Query 001197
Match_columns 1125
No_of_seqs 576 out of 3085
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 18:27:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0386 Chromatin remodeling c 100.0 2E-178 5E-183 1574.2 64.9 1042 15-1121 12-1111(1157)
2 KOG0385 Chromatin remodeling c 100.0 4E-122 8E-127 1069.5 52.5 509 394-914 154-670 (971)
3 KOG0384 Chromodomain-helicase 100.0 1E-110 3E-115 1011.4 38.9 507 394-914 357-888 (1373)
4 PLN03142 Probable chromatin-re 100.0 1.5E-98 3E-103 939.7 60.8 571 395-984 158-735 (1033)
5 KOG0391 SNF2 family DNA-depend 100.0 2.3E-99 5E-104 895.3 42.1 470 400-874 609-1416(1958)
6 KOG0389 SNF2 family DNA-depend 100.0 2.4E-97 5E-102 866.0 43.0 472 396-871 387-914 (941)
7 KOG0388 SNF2 family DNA-depend 100.0 5.7E-97 1E-101 846.6 45.2 465 395-873 556-1182(1185)
8 KOG0387 Transcription-coupled 100.0 6.4E-93 1.4E-97 830.3 37.5 479 406-891 204-700 (923)
9 KOG0392 SNF2 family DNA-depend 100.0 3.7E-88 8E-93 811.6 44.0 495 370-870 935-1479(1549)
10 KOG0390 DNA repair protein, SN 100.0 6.7E-73 1.5E-77 680.9 42.7 463 406-873 237-735 (776)
11 KOG1015 Transcription regulato 100.0 2.3E-72 5E-77 657.9 35.2 512 406-924 667-1359(1567)
12 KOG1002 Nucleotide excision re 100.0 1.9E-72 4.1E-77 627.3 29.2 460 397-868 175-772 (791)
13 COG0553 HepA Superfamily II DN 100.0 4.1E-69 8.9E-74 684.8 37.1 470 397-868 327-845 (866)
14 KOG4439 RNA polymerase II tran 100.0 1.3E-67 2.9E-72 609.5 33.3 478 383-879 300-894 (901)
15 KOG1016 Predicted DNA helicase 100.0 4.5E-61 9.8E-66 554.0 27.3 479 406-892 253-892 (1387)
16 KOG1000 Chromatin remodeling p 100.0 1.5E-55 3.2E-60 493.8 32.7 417 407-865 198-623 (689)
17 PRK04914 ATP-dependent helicas 100.0 2.1E-54 4.6E-59 541.1 35.5 430 406-870 151-630 (956)
18 KOG0383 Predicted helicase [Ge 100.0 8E-56 1.7E-60 529.6 11.0 389 397-799 283-696 (696)
19 KOG1001 Helicase-like transcri 100.0 3E-52 6.5E-57 505.6 20.0 438 410-866 135-671 (674)
20 PF00176 SNF2_N: SNF2 family N 100.0 2.7E-43 5.8E-48 393.6 22.8 277 411-700 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 3.9E-39 8.4E-44 392.5 36.2 382 405-894 253-665 (732)
22 PRK13766 Hef nuclease; Provisi 100.0 1.2E-34 2.5E-39 366.3 35.1 432 406-861 14-495 (773)
23 KOG0298 DEAD box-containing he 100.0 3.9E-34 8.5E-39 349.8 17.4 261 424-700 372-691 (1394)
24 COG1111 MPH1 ERCC4-like helica 100.0 7.2E-29 1.6E-33 283.4 35.9 426 406-864 14-500 (542)
25 PHA02558 uvsW UvsW helicase; P 100.0 3.4E-28 7.4E-33 292.9 34.2 337 405-846 112-456 (501)
26 COG1061 SSL2 DNA or RNA helica 100.0 2.2E-28 4.8E-33 289.8 31.4 363 404-856 33-405 (442)
27 TIGR00614 recQ_fam ATP-depende 99.9 2.8E-25 6E-30 266.0 31.7 306 406-839 10-329 (470)
28 PRK11776 ATP-dependent RNA hel 99.9 2.3E-24 5.1E-29 257.4 32.9 315 407-845 26-349 (460)
29 PTZ00110 helicase; Provisional 99.9 3.2E-24 6.9E-29 260.7 33.1 319 407-845 152-484 (545)
30 KOG0354 DEAD-box like helicase 99.9 2E-23 4.3E-28 251.1 34.0 411 406-843 61-527 (746)
31 TIGR01389 recQ ATP-dependent D 99.9 1.2E-23 2.7E-28 258.5 32.9 303 406-838 12-326 (591)
32 PRK11192 ATP-dependent RNA hel 99.9 1.6E-23 3.5E-28 248.3 32.3 314 406-838 22-347 (434)
33 PRK11057 ATP-dependent DNA hel 99.9 1.9E-23 4.1E-28 257.1 32.8 301 407-837 25-337 (607)
34 PRK04837 ATP-dependent RNA hel 99.9 8.6E-24 1.9E-28 250.0 27.9 315 407-844 30-361 (423)
35 PRK01297 ATP-dependent RNA hel 99.9 2E-23 4.3E-28 250.4 31.2 317 406-844 108-441 (475)
36 PRK10590 ATP-dependent RNA hel 99.9 1.1E-23 2.4E-28 251.3 28.6 310 406-837 22-346 (456)
37 PLN00206 DEAD-box ATP-dependen 99.9 2.7E-23 6E-28 251.5 31.3 315 406-844 142-474 (518)
38 PRK04537 ATP-dependent RNA hel 99.9 3.3E-23 7.3E-28 252.9 31.4 314 407-843 31-362 (572)
39 PRK11634 ATP-dependent RNA hel 99.9 1.1E-22 2.5E-27 250.0 34.4 325 406-855 27-360 (629)
40 PTZ00424 helicase 45; Provisio 99.9 6.5E-23 1.4E-27 240.2 30.2 318 406-845 49-374 (401)
41 KOG1123 RNA polymerase II tran 99.9 1.9E-23 4.1E-28 236.0 22.4 385 405-898 300-715 (776)
42 PLN03137 ATP-dependent DNA hel 99.9 6.8E-23 1.5E-27 256.1 29.5 309 406-840 459-784 (1195)
43 KOG0331 ATP-dependent RNA heli 99.9 5.8E-22 1.2E-26 232.5 27.3 311 407-835 113-440 (519)
44 TIGR00643 recG ATP-dependent D 99.9 4.3E-21 9.4E-26 237.3 34.3 304 406-837 234-560 (630)
45 PRK13767 ATP-dependent helicas 99.9 4E-21 8.7E-26 244.7 30.7 324 406-840 31-395 (876)
46 PRK10917 ATP-dependent DNA hel 99.9 1.4E-20 2.9E-25 234.5 33.5 306 406-842 260-586 (681)
47 TIGR00580 mfd transcription-re 99.9 1.2E-20 2.7E-25 238.8 31.8 307 405-844 449-769 (926)
48 COG0513 SrmB Superfamily II DN 99.9 2.5E-20 5.5E-25 225.0 31.9 332 406-858 50-392 (513)
49 PRK11448 hsdR type I restricti 99.9 9.2E-21 2E-25 243.8 29.7 357 405-843 411-816 (1123)
50 KOG0330 ATP-dependent RNA heli 99.9 8.2E-21 1.8E-25 210.8 24.6 318 407-848 83-410 (476)
51 TIGR03817 DECH_helic helicase/ 99.9 4.2E-20 9.1E-25 231.4 33.2 331 407-853 36-394 (742)
52 PRK10689 transcription-repair 99.9 2.6E-20 5.6E-25 240.4 29.7 303 406-836 599-912 (1147)
53 PRK02362 ski2-like helicase; P 99.9 1.4E-19 3E-24 227.9 31.2 319 407-844 23-396 (737)
54 PRK01172 ski2-like helicase; P 99.8 5.5E-19 1.2E-23 220.7 30.8 309 406-842 21-375 (674)
55 TIGR01587 cas3_core CRISPR-ass 99.8 1.3E-18 2.8E-23 201.2 29.0 314 429-858 2-354 (358)
56 PRK00254 ski2-like helicase; P 99.8 1.1E-18 2.4E-23 219.3 30.7 317 406-846 22-389 (720)
57 COG0514 RecQ Superfamily II DN 99.8 7.2E-19 1.5E-23 210.0 27.1 307 406-840 16-334 (590)
58 KOG0338 ATP-dependent RNA heli 99.8 1.5E-18 3.3E-23 197.5 23.7 324 406-852 202-538 (691)
59 COG1201 Lhr Lhr-like helicases 99.8 1.1E-17 2.4E-22 206.3 24.0 330 406-857 21-372 (814)
60 TIGR03714 secA2 accessory Sec 99.8 7.4E-17 1.6E-21 198.2 30.5 390 407-836 68-530 (762)
61 TIGR00348 hsdR type I site-spe 99.8 7E-17 1.5E-21 200.7 30.7 368 406-843 237-649 (667)
62 KOG0350 DEAD-box ATP-dependent 99.8 3.8E-18 8.2E-23 194.4 17.4 352 406-843 158-538 (620)
63 KOG0345 ATP-dependent RNA heli 99.8 8.7E-17 1.9E-21 182.5 26.9 316 406-839 27-360 (567)
64 TIGR02621 cas3_GSU0051 CRISPR- 99.8 4.5E-17 9.8E-22 201.9 26.9 106 731-841 270-390 (844)
65 PRK09751 putative ATP-dependen 99.8 5.3E-17 1.2E-21 211.2 26.3 96 732-830 243-371 (1490)
66 KOG0328 Predicted ATP-dependen 99.8 3.6E-17 7.8E-22 175.3 19.5 316 407-846 49-374 (400)
67 KOG0333 U5 snRNP-like RNA heli 99.7 1.6E-16 3.5E-21 182.0 24.4 340 407-844 267-623 (673)
68 PRK09401 reverse gyrase; Revie 99.7 4.5E-16 9.9E-21 201.8 30.6 296 404-831 77-432 (1176)
69 KOG0342 ATP-dependent RNA heli 99.7 8.7E-17 1.9E-21 183.7 21.0 310 407-833 104-427 (543)
70 PRK09200 preprotein translocas 99.7 7.1E-16 1.5E-20 191.2 29.0 117 715-836 410-534 (790)
71 COG4096 HsdR Type I site-speci 99.7 1E-16 2.2E-21 193.2 20.3 349 404-843 162-546 (875)
72 COG1204 Superfamily II helicas 99.7 2.9E-16 6.2E-21 195.8 24.6 308 407-832 31-395 (766)
73 KOG0335 ATP-dependent RNA heli 99.7 3.7E-16 8.1E-21 181.2 23.6 318 406-839 95-440 (482)
74 PRK12898 secA preprotein trans 99.7 3.8E-15 8.2E-20 181.4 32.2 130 715-854 455-592 (656)
75 PHA02653 RNA helicase NPH-II; 99.7 1.2E-15 2.6E-20 187.9 28.3 326 402-847 155-516 (675)
76 KOG0340 ATP-dependent RNA heli 99.7 7.7E-16 1.7E-20 169.9 22.9 312 406-835 28-353 (442)
77 KOG0348 ATP-dependent RNA heli 99.7 1.2E-15 2.6E-20 175.1 23.8 118 716-836 404-547 (708)
78 TIGR03158 cas3_cyano CRISPR-as 99.7 4.6E-15 1E-19 172.1 29.3 85 732-828 271-357 (357)
79 TIGR00963 secA preprotein tran 99.7 7.7E-16 1.7E-20 188.3 23.5 146 688-838 355-512 (745)
80 COG1200 RecG RecG-like helicas 99.7 2.5E-15 5.4E-20 179.5 26.9 303 406-836 261-584 (677)
81 PF04851 ResIII: Type III rest 99.7 3.6E-16 7.8E-21 161.8 14.1 154 406-569 2-183 (184)
82 cd00079 HELICc Helicase superf 99.7 2.5E-16 5.4E-21 154.1 11.8 120 717-839 12-131 (131)
83 KOG0339 ATP-dependent RNA heli 99.7 6.1E-15 1.3E-19 168.2 23.1 299 430-846 264-576 (731)
84 TIGR01054 rgy reverse gyrase. 99.7 5.7E-15 1.2E-19 191.9 25.5 279 405-815 76-409 (1171)
85 PRK05580 primosome assembly pr 99.7 6.9E-15 1.5E-19 183.2 24.8 359 406-843 143-549 (679)
86 KOG0341 DEAD-box protein abstr 99.7 8.8E-16 1.9E-20 170.1 14.6 322 407-852 192-535 (610)
87 COG1205 Distinct helicase fami 99.6 3.1E-14 6.7E-19 180.0 29.3 330 407-853 70-430 (851)
88 KOG0343 RNA Helicase [RNA proc 99.6 2E-14 4.4E-19 165.5 24.6 330 407-859 91-435 (758)
89 TIGR00595 priA primosomal prot 99.6 5.5E-14 1.2E-18 169.6 28.7 128 431-569 2-140 (505)
90 KOG0347 RNA helicase [RNA proc 99.6 9.7E-15 2.1E-19 168.2 20.9 346 427-869 220-615 (731)
91 TIGR01970 DEAH_box_HrpB ATP-de 99.6 4.1E-14 9E-19 178.2 27.0 107 733-845 209-336 (819)
92 PRK09694 helicase Cas3; Provis 99.6 4.7E-14 1E-18 177.9 27.4 332 405-833 284-665 (878)
93 COG4098 comFA Superfamily II D 99.6 8.3E-13 1.8E-17 145.8 32.1 314 401-842 91-413 (441)
94 PRK14701 reverse gyrase; Provi 99.6 9.6E-14 2.1E-18 184.1 29.6 333 405-835 77-448 (1638)
95 KOG4284 DEAD box protein [Tran 99.6 2E-14 4.3E-19 167.6 20.0 321 407-843 47-378 (980)
96 KOG0351 ATP-dependent DNA heli 99.6 3.6E-14 7.7E-19 178.6 21.5 312 406-842 263-591 (941)
97 COG4889 Predicted helicase [Ge 99.6 4.6E-14 1E-18 168.2 19.4 158 406-568 160-350 (1518)
98 KOG0332 ATP-dependent RNA heli 99.6 3.6E-14 7.8E-19 157.6 17.2 304 408-834 113-434 (477)
99 COG1202 Superfamily II helicas 99.6 8.4E-14 1.8E-18 161.1 20.7 316 406-845 215-553 (830)
100 PRK13104 secA preprotein trans 99.6 3.4E-13 7.4E-18 167.4 27.0 395 404-840 79-584 (896)
101 smart00487 DEXDc DEAD-like hel 99.6 7.5E-14 1.6E-18 144.5 17.2 166 405-578 6-180 (201)
102 PRK11664 ATP-dependent RNA hel 99.6 1.9E-13 4.2E-18 172.5 24.0 108 732-845 211-339 (812)
103 KOG0336 ATP-dependent RNA heli 99.6 7.6E-14 1.6E-18 155.9 17.2 309 407-835 242-564 (629)
104 KOG0326 ATP-dependent RNA heli 99.5 1E-14 2.2E-19 158.8 9.1 310 407-843 107-427 (459)
105 KOG0344 ATP-dependent RNA heli 99.5 9.9E-14 2.1E-18 162.3 16.0 314 407-839 158-492 (593)
106 PF00271 Helicase_C: Helicase 99.5 2E-14 4.3E-19 129.8 8.0 78 751-831 1-78 (78)
107 TIGR00631 uvrb excinuclease AB 99.5 2.1E-12 4.6E-17 159.8 28.4 125 716-846 425-554 (655)
108 cd00046 DEXDc DEAD-like helica 99.5 1.3E-13 2.9E-18 134.3 14.0 136 428-568 2-144 (144)
109 PRK12906 secA preprotein trans 99.5 3.6E-12 7.8E-17 157.7 29.4 393 404-837 77-547 (796)
110 KOG0352 ATP-dependent DNA heli 99.5 1.6E-12 3.6E-17 146.1 22.6 323 409-840 22-359 (641)
111 KOG0334 RNA helicase [RNA proc 99.5 5.4E-13 1.2E-17 164.6 19.8 318 406-844 386-719 (997)
112 PRK05298 excinuclease ABC subu 99.5 6.6E-11 1.4E-15 147.3 37.6 124 716-845 429-557 (652)
113 KOG0353 ATP-dependent DNA heli 99.5 1.9E-12 4.2E-17 143.2 19.5 315 407-842 94-466 (695)
114 COG1197 Mfd Transcription-repa 99.5 1.1E-11 2.4E-16 155.8 27.9 308 406-844 593-912 (1139)
115 PRK13107 preprotein translocas 99.5 2.3E-11 5E-16 150.9 30.0 398 404-839 79-587 (908)
116 PRK12904 preprotein translocas 99.5 2.8E-11 6E-16 150.5 30.2 391 404-840 78-570 (830)
117 PRK11131 ATP-dependent RNA hel 99.4 8.2E-12 1.8E-16 161.0 25.2 108 732-847 285-413 (1294)
118 KOG0952 DNA/RNA helicase MER3/ 99.4 1.5E-11 3.3E-16 150.9 25.0 325 422-859 122-518 (1230)
119 KOG0327 Translation initiation 99.4 1.4E-12 3.1E-17 146.3 14.7 313 407-845 48-370 (397)
120 KOG0346 RNA helicase [RNA proc 99.4 2.1E-11 4.5E-16 138.2 22.8 308 411-844 45-409 (569)
121 smart00490 HELICc helicase sup 99.4 7.5E-13 1.6E-17 118.8 8.6 81 748-831 2-82 (82)
122 TIGR01967 DEAH_box_HrpA ATP-de 99.4 3E-11 6.6E-16 156.3 23.8 108 732-847 278-406 (1283)
123 PF00270 DEAD: DEAD/DEAH box h 99.3 1.5E-11 3.2E-16 126.2 15.5 156 410-574 2-167 (169)
124 COG1203 CRISPR-associated heli 99.3 9.3E-11 2E-15 147.9 24.3 347 405-861 193-568 (733)
125 cd00268 DEADc DEAD-box helicas 99.3 2.8E-11 6.2E-16 128.6 16.2 155 407-569 21-185 (203)
126 PRK12900 secA preprotein trans 99.3 1.8E-10 4E-15 143.6 24.8 116 716-836 581-704 (1025)
127 PRK12899 secA preprotein trans 99.3 1.4E-09 3E-14 135.7 28.6 120 715-839 550-677 (970)
128 KOG0337 ATP-dependent RNA heli 99.3 5.1E-11 1.1E-15 134.6 14.1 316 407-845 43-368 (529)
129 PF11496 HDA2-3: Class II hist 99.2 1.7E-10 3.6E-15 130.3 16.9 208 646-854 4-254 (297)
130 PRK12326 preprotein translocas 99.2 4.7E-09 1E-13 128.2 30.0 388 404-839 75-543 (764)
131 KOG0951 RNA helicase BRR2, DEA 99.2 1.2E-09 2.6E-14 135.8 20.7 71 757-831 607-688 (1674)
132 TIGR01407 dinG_rel DnaQ family 99.1 1.4E-08 3E-13 130.7 28.3 88 722-815 662-756 (850)
133 COG0556 UvrB Helicase subunit 99.1 2.6E-08 5.7E-13 116.1 27.5 130 722-855 435-569 (663)
134 PRK13103 secA preprotein trans 99.1 3.5E-08 7.6E-13 123.3 27.9 147 689-840 400-588 (913)
135 COG1110 Reverse gyrase [DNA re 99.0 5.7E-08 1.2E-12 120.2 27.9 323 404-814 79-416 (1187)
136 PF14619 SnAC: Snf2-ATP coupli 99.0 1.4E-10 3E-15 104.5 1.6 60 931-991 15-74 (74)
137 KOG0947 Cytoplasmic exosomal R 99.0 5.7E-08 1.2E-12 118.9 23.6 361 400-845 290-723 (1248)
138 COG0610 Type I site-specific r 98.9 6.2E-08 1.3E-12 125.1 24.2 143 425-575 272-420 (962)
139 COG4581 Superfamily II RNA hel 98.9 3.1E-08 6.7E-13 125.3 19.5 159 402-600 114-282 (1041)
140 PRK12903 secA preprotein trans 98.9 4.7E-07 1E-11 112.4 27.1 146 689-839 377-535 (925)
141 KOG0948 Nuclear exosomal RNA h 98.8 6.6E-08 1.4E-12 115.8 14.6 153 406-600 128-288 (1041)
142 COG1198 PriA Primosomal protei 98.7 1.9E-06 4.2E-11 107.2 26.9 152 406-568 197-359 (730)
143 TIGR00604 rad3 DNA repair heli 98.7 1.5E-06 3.1E-11 110.1 26.5 77 402-478 5-82 (705)
144 PF13872 AAA_34: P-loop contai 98.7 1.7E-07 3.8E-12 104.8 15.7 236 403-664 33-302 (303)
145 KOG0329 ATP-dependent RNA heli 98.7 2.8E-07 6.1E-12 98.8 14.5 127 407-543 64-198 (387)
146 TIGR00596 rad1 DNA repair prot 98.6 6.4E-07 1.4E-11 113.2 17.2 75 508-583 7-89 (814)
147 PRK08074 bifunctional ATP-depe 98.6 8.2E-06 1.8E-10 106.1 26.9 91 721-815 739-835 (928)
148 CHL00122 secA preprotein trans 98.6 1.2E-05 2.6E-10 100.7 26.8 110 689-802 375-490 (870)
149 TIGR03117 cas_csf4 CRISPR-asso 98.6 1.6E-05 3.5E-10 98.3 27.4 78 412-490 2-85 (636)
150 PRK12901 secA preprotein trans 98.5 1.4E-05 3E-10 101.0 26.3 120 715-839 610-737 (1112)
151 COG1199 DinG Rad3-related DNA 98.5 9.7E-06 2.1E-10 101.9 24.4 104 730-838 476-612 (654)
152 PRK07246 bifunctional ATP-depe 98.5 2.4E-05 5.2E-10 100.3 27.8 89 721-815 635-725 (820)
153 KOG0949 Predicted helicase, DE 98.4 4.9E-06 1.1E-10 102.7 18.0 163 406-581 510-682 (1330)
154 KOG0950 DNA polymerase theta/e 98.4 7.7E-06 1.7E-10 101.5 17.4 152 407-571 223-390 (1008)
155 PRK12902 secA preprotein trans 98.4 0.00021 4.5E-09 89.9 30.0 355 404-802 82-505 (939)
156 PRK15483 type III restriction- 98.3 5.5E-06 1.2E-10 105.2 14.6 169 427-603 60-277 (986)
157 COG1643 HrpA HrpA-like helicas 98.3 5.2E-05 1.1E-09 96.0 22.1 110 733-848 259-390 (845)
158 KOG0920 ATP-dependent RNA heli 98.3 7.1E-05 1.5E-09 94.7 22.6 127 717-849 395-548 (924)
159 PRK11747 dinG ATP-dependent DN 98.2 0.00022 4.7E-09 90.3 26.7 89 720-815 521-616 (697)
160 KOG0922 DEAH-box RNA helicase 98.2 0.00013 2.9E-09 88.2 23.2 110 735-847 260-392 (674)
161 KOG0349 Putative DEAD-box RNA 98.2 2.7E-06 5.8E-11 96.9 8.3 96 732-830 504-602 (725)
162 PF02399 Herpes_ori_bp: Origin 98.2 6.3E-05 1.4E-09 93.5 19.8 111 719-840 269-385 (824)
163 KOG1513 Nuclear helicase MOP-3 98.1 0.00014 3.1E-09 88.2 20.7 246 399-666 257-538 (1300)
164 KOG0924 mRNA splicing factor A 98.1 0.00023 5E-09 85.5 21.8 93 757-852 597-704 (1042)
165 smart00489 DEXDc3 DEAD-like he 98.1 3.1E-05 6.8E-10 87.9 14.0 74 406-479 7-84 (289)
166 smart00488 DEXDc2 DEAD-like he 98.1 3.1E-05 6.8E-10 87.9 14.0 74 406-479 7-84 (289)
167 PF07652 Flavi_DEAD: Flaviviru 98.1 2.4E-05 5.2E-10 79.1 11.1 125 428-568 6-136 (148)
168 PF13871 Helicase_C_4: Helicas 98.0 1E-05 2.2E-10 90.5 7.6 93 774-869 52-152 (278)
169 PF08880 QLQ: QLQ; InterPro: 98.0 7E-06 1.5E-10 63.9 3.5 30 17-46 7-36 (37)
170 PF13086 AAA_11: AAA domain; P 97.9 8.4E-05 1.8E-09 79.8 12.7 68 407-478 1-75 (236)
171 KOG0926 DEAH-box RNA helicase 97.8 0.0002 4.3E-09 87.4 14.6 79 760-844 607-703 (1172)
172 KOG0923 mRNA splicing factor A 97.8 0.0014 3.1E-08 78.9 19.8 83 757-847 506-608 (902)
173 TIGR02562 cas3_yersinia CRISPR 97.7 0.034 7.3E-07 71.8 31.7 47 786-835 838-884 (1110)
174 KOG0953 Mitochondrial RNA heli 97.6 0.00023 5.1E-09 84.2 10.2 101 731-835 356-466 (700)
175 COG3587 Restriction endonuclea 97.4 0.00098 2.1E-08 82.5 11.4 161 423-601 71-266 (985)
176 COG0653 SecA Preprotein transl 97.3 0.034 7.4E-07 70.3 24.8 115 714-833 410-535 (822)
177 PF02562 PhoH: PhoH-like prote 97.2 0.001 2.2E-08 71.8 8.8 143 408-574 5-161 (205)
178 PRK10536 hypothetical protein; 97.1 0.0022 4.7E-08 71.3 9.9 146 407-574 59-218 (262)
179 KOG1802 RNA helicase nonsense 97.0 0.0067 1.5E-07 73.4 12.7 148 406-567 409-601 (935)
180 PRK14873 primosome assembly pr 96.9 0.005 1.1E-07 77.4 11.9 127 435-569 169-304 (665)
181 KOG0925 mRNA splicing factor A 96.9 0.04 8.6E-07 65.0 17.8 60 788-849 315-391 (699)
182 PF07517 SecA_DEAD: SecA DEAD- 96.9 0.0077 1.7E-07 67.6 11.8 153 405-577 75-266 (266)
183 PF13401 AAA_22: AAA domain; P 96.8 0.0039 8.5E-08 61.3 7.7 115 426-568 4-125 (131)
184 TIGR00376 DNA helicase, putati 96.6 0.026 5.7E-07 71.0 15.4 68 406-479 156-224 (637)
185 KOG1803 DNA helicase [Replicat 96.6 0.013 2.9E-07 70.8 11.5 65 405-475 183-248 (649)
186 COG0553 HepA Superfamily II DN 96.5 0.0019 4.1E-08 83.5 4.1 180 406-590 83-289 (866)
187 KOG1131 RNA polymerase II tran 96.3 0.027 5.9E-07 66.8 11.6 69 397-465 6-74 (755)
188 PF13307 Helicase_C_2: Helicas 96.3 0.01 2.2E-07 62.0 7.6 79 730-815 6-92 (167)
189 KOG4150 Predicted ATP-dependen 96.2 0.011 2.4E-07 70.3 7.9 115 715-832 507-629 (1034)
190 PF13604 AAA_30: AAA domain; P 96.2 0.041 9E-07 59.0 11.8 124 407-570 1-132 (196)
191 PF09848 DUF2075: Uncharacteri 96.2 0.012 2.6E-07 68.7 8.3 90 430-544 5-97 (352)
192 KOG1132 Helicase of the DEAD s 96.1 0.026 5.7E-07 70.7 10.6 89 733-822 561-663 (945)
193 PF12340 DUF3638: Protein of u 96.1 0.05 1.1E-06 59.6 11.7 114 405-521 21-143 (229)
194 PF07529 HSA: HSA; InterPro: 96.1 0.023 5.1E-07 51.0 7.6 56 232-287 14-73 (73)
195 smart00573 HSA domain in helic 96.0 0.026 5.6E-07 51.1 7.6 55 233-287 15-73 (73)
196 cd00009 AAA The AAA+ (ATPases 96.0 0.082 1.8E-06 51.6 11.8 41 530-570 84-131 (151)
197 TIGR01447 recD exodeoxyribonuc 95.5 0.076 1.6E-06 66.2 11.4 140 410-571 148-298 (586)
198 TIGR02881 spore_V_K stage V sp 95.3 0.062 1.3E-06 60.2 8.9 27 427-453 43-69 (261)
199 PRK07003 DNA polymerase III su 95.2 0.16 3.5E-06 64.1 12.7 53 529-581 118-171 (830)
200 PRK14956 DNA polymerase III su 95.1 0.14 2.9E-06 62.1 11.4 42 412-453 23-67 (484)
201 KOG1805 DNA replication helica 95.1 0.084 1.8E-06 66.9 9.8 148 407-570 669-831 (1100)
202 TIGR01448 recD_rel helicase, p 94.9 0.18 3.8E-06 64.6 12.4 135 405-571 321-455 (720)
203 smart00382 AAA ATPases associa 94.8 0.13 2.8E-06 49.5 8.7 43 427-472 3-45 (148)
204 PRK04296 thymidine kinase; Pro 94.5 0.13 2.9E-06 54.9 8.6 34 429-465 5-38 (190)
205 PRK10875 recD exonuclease V su 94.4 0.22 4.7E-06 62.5 11.4 142 408-571 153-304 (615)
206 PRK09112 DNA polymerase III su 94.4 0.38 8.2E-06 56.5 12.7 144 412-568 28-181 (351)
207 PRK07764 DNA polymerase III su 94.2 0.54 1.2E-05 60.9 14.3 113 430-567 41-158 (824)
208 PLN03025 replication factor C 94.1 0.32 7E-06 56.1 11.3 51 530-580 99-150 (319)
209 PRK14949 DNA polymerase III su 94.0 0.29 6.4E-06 63.0 11.3 117 430-571 42-161 (944)
210 PRK12323 DNA polymerase III su 93.7 0.59 1.3E-05 58.5 12.7 23 430-452 42-64 (700)
211 CHL00181 cbbX CbbX; Provisiona 93.6 0.21 4.5E-06 57.0 8.3 39 426-464 59-98 (287)
212 TIGR02880 cbbX_cfxQ probable R 93.4 0.21 4.5E-06 56.9 7.8 39 426-464 58-97 (284)
213 KOG0951 RNA helicase BRR2, DEA 93.3 0.2 4.2E-06 65.1 7.8 110 422-546 1155-1269(1674)
214 PRK06526 transposase; Provisio 93.0 0.27 5.9E-06 55.1 7.9 107 415-568 91-201 (254)
215 COG3421 Uncharacterized protei 92.7 0.13 2.9E-06 62.3 5.0 105 433-542 4-124 (812)
216 TIGR03015 pepcterm_ATPase puta 92.7 1.1 2.3E-05 49.9 12.1 41 409-449 25-66 (269)
217 COG1875 NYN ribonuclease and A 92.7 0.48 1E-05 55.0 9.1 69 399-469 219-288 (436)
218 PRK12402 replication factor C 92.6 0.4 8.6E-06 55.2 8.7 38 415-452 23-62 (337)
219 PRK14960 DNA polymerase III su 92.4 1.4 3E-05 55.4 13.4 40 530-569 118-158 (702)
220 PRK08181 transposase; Validate 92.3 0.99 2.1E-05 51.1 11.1 46 408-453 88-133 (269)
221 PRK07994 DNA polymerase III su 92.1 2.2 4.7E-05 53.9 14.8 122 430-578 42-168 (647)
222 PF06862 DUF1253: Protein of u 92.0 1.8 3.9E-05 52.1 13.3 125 717-843 281-413 (442)
223 PRK05707 DNA polymerase III su 91.9 1.4 2.9E-05 51.4 12.0 147 407-578 3-155 (328)
224 PF13177 DNA_pol3_delta2: DNA 91.9 1.6 3.5E-05 45.4 11.4 141 412-578 2-151 (162)
225 PRK12723 flagellar biosynthesi 91.9 1.9 4.1E-05 51.3 13.3 130 428-584 176-313 (388)
226 TIGR02928 orc1/cdc6 family rep 91.8 1.6 3.5E-05 51.0 12.6 44 409-452 20-66 (365)
227 PRK06835 DNA replication prote 91.3 1.7 3.7E-05 50.6 11.9 48 406-453 159-210 (329)
228 PRK14958 DNA polymerase III su 91.2 2.4 5.2E-05 52.3 13.7 50 529-578 118-168 (509)
229 PHA02544 44 clamp loader, smal 91.2 1.6 3.5E-05 50.0 11.6 41 530-570 100-142 (316)
230 TIGR02639 ClpA ATP-dependent C 91.1 44 0.00095 43.3 25.5 27 426-452 203-229 (731)
231 PTZ00112 origin recognition co 91.1 2.7 5.9E-05 54.2 13.9 51 399-452 753-807 (1164)
232 PRK14962 DNA polymerase III su 90.9 1.3 2.9E-05 54.0 11.0 43 410-452 20-62 (472)
233 TIGR03420 DnaA_homol_Hda DnaA 90.9 1.3 2.8E-05 47.9 9.9 27 426-452 38-64 (226)
234 PRK08769 DNA polymerase III su 90.8 1.8 4E-05 50.1 11.5 156 407-583 4-167 (319)
235 PRK14952 DNA polymerase III su 90.7 2.6 5.7E-05 52.7 13.5 132 412-568 18-157 (584)
236 PRK08451 DNA polymerase III su 90.7 1.5 3.3E-05 54.2 11.2 39 530-568 117-156 (535)
237 PRK09111 DNA polymerase III su 90.6 2.2 4.8E-05 53.5 12.8 25 429-453 49-73 (598)
238 PF13173 AAA_14: AAA domain 90.5 1.6 3.4E-05 43.4 9.3 39 530-569 61-99 (128)
239 PRK07471 DNA polymerase III su 90.4 2 4.4E-05 50.7 11.6 142 412-568 24-181 (365)
240 PRK07952 DNA replication prote 90.3 2.9 6.3E-05 46.7 12.2 44 428-478 101-144 (244)
241 PRK14961 DNA polymerase III su 90.3 3.1 6.8E-05 49.0 13.1 41 412-452 21-64 (363)
242 TIGR01073 pcrA ATP-dependent D 90.3 19 0.0004 46.6 21.1 54 407-466 4-58 (726)
243 PRK08116 hypothetical protein; 90.3 2.4 5.3E-05 47.9 11.7 42 426-470 114-155 (268)
244 PRK14964 DNA polymerase III su 90.2 4.7 0.0001 49.4 14.8 118 428-570 37-157 (491)
245 PRK08058 DNA polymerase III su 89.9 2.9 6.3E-05 48.6 12.3 145 411-581 10-162 (329)
246 PRK07940 DNA polymerase III su 89.7 2.6 5.6E-05 50.3 11.8 24 430-453 40-63 (394)
247 PRK14951 DNA polymerase III su 89.7 2.5 5.4E-05 53.2 12.1 42 412-453 21-65 (618)
248 KOG0991 Replication factor C, 89.5 0.48 1E-05 51.8 4.9 102 424-564 46-148 (333)
249 PF00448 SRP54: SRP54-type pro 89.5 1.8 3.8E-05 46.7 9.3 130 430-583 5-140 (196)
250 smart00492 HELICc3 helicase su 89.4 1.7 3.7E-05 44.3 8.8 53 760-815 25-79 (141)
251 PRK14957 DNA polymerase III su 89.4 3.2 6.8E-05 51.6 12.5 24 430-453 42-65 (546)
252 PF06733 DEAD_2: DEAD_2; Inte 89.2 0.3 6.5E-06 51.2 3.2 38 507-544 118-159 (174)
253 COG0470 HolB ATPase involved i 89.2 1.6 3.5E-05 49.7 9.4 116 429-567 27-147 (325)
254 PRK06645 DNA polymerase III su 89.1 4 8.6E-05 50.3 13.1 26 428-453 45-70 (507)
255 KOG0989 Replication factor C, 89.0 1.2 2.6E-05 50.8 7.7 43 410-452 39-83 (346)
256 PF13245 AAA_19: Part of AAA d 88.9 1.4 3E-05 40.2 6.9 47 429-476 13-62 (76)
257 PRK07993 DNA polymerase III su 88.9 3.9 8.4E-05 47.8 12.3 151 407-581 2-160 (334)
258 PF05621 TniB: Bacterial TniB 88.7 3.5 7.6E-05 47.3 11.3 46 523-568 138-189 (302)
259 smart00491 HELICc2 helicase su 88.7 1.7 3.6E-05 44.5 8.1 54 761-815 23-80 (142)
260 PRK05703 flhF flagellar biosyn 88.5 4.7 0.0001 48.7 12.9 56 530-585 299-359 (424)
261 PRK08691 DNA polymerase III su 88.4 3.2 6.9E-05 52.7 11.7 24 430-453 42-65 (709)
262 PRK14974 cell division protein 88.1 6.3 0.00014 46.1 13.2 47 429-478 143-193 (336)
263 PRK11889 flhF flagellar biosyn 88.1 6 0.00013 47.2 13.0 122 430-582 245-376 (436)
264 PRK06090 DNA polymerase III su 88.0 5.1 0.00011 46.5 12.4 152 407-583 3-162 (319)
265 PRK14963 DNA polymerase III su 87.6 3.8 8.1E-05 50.6 11.6 42 412-453 19-63 (504)
266 TIGR00678 holB DNA polymerase 87.5 3.9 8.6E-05 43.2 10.4 25 429-453 17-41 (188)
267 PRK14950 DNA polymerase III su 87.5 3.9 8.6E-05 51.3 11.9 41 412-452 21-64 (585)
268 PRK14955 DNA polymerase III su 87.3 8.2 0.00018 46.1 14.0 42 412-453 21-65 (397)
269 PRK14969 DNA polymerase III su 87.2 8.5 0.00019 47.8 14.5 23 430-452 42-64 (527)
270 PRK00080 ruvB Holliday junctio 87.2 11 0.00024 43.7 14.7 44 407-450 28-75 (328)
271 PRK06647 DNA polymerase III su 87.2 4 8.7E-05 51.0 11.6 24 430-453 42-65 (563)
272 PRK06871 DNA polymerase III su 87.1 5.8 0.00013 46.2 12.1 145 408-579 3-157 (325)
273 PRK08084 DNA replication initi 86.7 4.6 9.9E-05 44.6 10.6 26 427-452 46-71 (235)
274 PRK14959 DNA polymerase III su 86.5 3.2 6.9E-05 52.2 10.2 24 430-453 42-65 (624)
275 PRK08903 DnaA regulatory inact 86.5 4.2 9.2E-05 44.3 10.2 27 426-452 42-68 (227)
276 PRK14965 DNA polymerase III su 86.5 6.9 0.00015 49.1 13.3 113 430-567 42-157 (576)
277 PF00004 AAA: ATPase family as 86.4 1.7 3.8E-05 42.2 6.5 34 430-469 2-35 (132)
278 PF05876 Terminase_GpA: Phage 86.1 0.77 1.7E-05 57.2 4.6 164 406-580 15-191 (557)
279 TIGR00595 priA primosomal prot 86.1 3.9 8.4E-05 50.5 10.6 95 714-812 6-101 (505)
280 PRK00440 rfc replication facto 86.1 9.8 0.00021 43.3 13.4 39 530-568 102-141 (319)
281 cd01124 KaiC KaiC is a circadi 86.1 4.8 0.0001 42.0 10.0 48 429-479 2-49 (187)
282 PRK06921 hypothetical protein; 85.9 4.8 0.0001 45.5 10.5 28 426-453 117-144 (266)
283 PRK14948 DNA polymerase III su 85.6 2.8 6.1E-05 52.9 9.3 42 412-453 21-65 (620)
284 PRK00411 cdc6 cell division co 85.3 11 0.00023 44.6 13.6 45 409-453 35-82 (394)
285 PRK14953 DNA polymerase III su 85.1 10 0.00022 46.7 13.5 41 412-452 21-64 (486)
286 PRK05563 DNA polymerase III su 84.8 11 0.00025 47.0 14.0 24 430-453 42-65 (559)
287 PRK08727 hypothetical protein; 84.7 3.8 8.3E-05 45.2 8.8 25 429-453 44-68 (233)
288 cd01120 RecA-like_NTPases RecA 84.6 7.8 0.00017 38.7 10.5 34 430-466 3-36 (165)
289 PHA02533 17 large terminase pr 84.5 3.9 8.4E-05 50.8 9.6 56 406-466 58-113 (534)
290 TIGR03345 VI_ClpV1 type VI sec 84.4 4.8 0.0001 52.8 10.8 41 412-452 192-234 (852)
291 PRK14087 dnaA chromosomal repl 84.0 7.8 0.00017 47.1 11.8 25 429-453 144-168 (450)
292 COG3267 ExeA Type II secretory 84.0 5.6 0.00012 44.5 9.4 46 429-478 54-105 (269)
293 PHA03333 putative ATPase subun 83.9 6.9 0.00015 49.4 11.1 140 409-569 171-332 (752)
294 PRK05580 primosome assembly pr 83.8 6.2 0.00013 50.5 11.3 95 715-813 172-267 (679)
295 PRK04195 replication factor C 83.8 9.2 0.0002 46.9 12.4 25 426-450 39-63 (482)
296 TIGR00362 DnaA chromosomal rep 83.8 6.3 0.00014 47.1 10.8 24 430-453 140-163 (405)
297 PRK14954 DNA polymerase III su 83.5 8.8 0.00019 48.5 12.2 41 412-452 21-64 (620)
298 PRK07133 DNA polymerase III su 83.3 7.5 0.00016 49.7 11.5 24 430-453 44-67 (725)
299 PRK05896 DNA polymerase III su 83.1 13 0.00028 46.8 13.2 24 430-453 42-65 (605)
300 PRK06964 DNA polymerase III su 83.0 11 0.00025 44.1 12.1 165 408-580 2-183 (342)
301 cd01121 Sms Sms (bacterial rad 82.7 7.7 0.00017 46.0 10.7 102 414-543 69-171 (372)
302 PRK06893 DNA replication initi 82.4 8.6 0.00019 42.3 10.4 24 430-453 43-66 (229)
303 PF00580 UvrD-helicase: UvrD/R 82.2 2.3 5E-05 47.9 6.0 55 408-468 1-56 (315)
304 PRK00149 dnaA chromosomal repl 82.0 8.3 0.00018 46.8 11.0 25 429-453 151-175 (450)
305 PRK04132 replication factor C 82.0 6.1 0.00013 51.5 10.2 54 530-583 630-684 (846)
306 TIGR02768 TraA_Ti Ti-type conj 81.7 9 0.00019 49.6 11.6 128 405-571 350-479 (744)
307 KOG0952 DNA/RNA helicase MER3/ 81.4 1.2 2.7E-05 57.4 3.6 113 423-545 940-1061(1230)
308 PRK12377 putative replication 81.2 12 0.00025 42.1 10.9 27 427-453 102-128 (248)
309 PRK14722 flhF flagellar biosyn 80.6 20 0.00044 42.5 13.1 27 426-452 137-163 (374)
310 PRK05642 DNA replication initi 80.5 7.1 0.00015 43.2 8.9 37 531-567 98-138 (234)
311 PRK10917 ATP-dependent DNA hel 79.6 9.6 0.00021 48.8 10.8 96 715-813 292-392 (681)
312 TIGR02397 dnaX_nterm DNA polym 79.4 13 0.00029 43.1 11.2 24 430-453 40-63 (355)
313 PRK14088 dnaA chromosomal repl 78.9 12 0.00026 45.4 10.9 25 429-453 133-157 (440)
314 PRK13889 conjugal transfer rel 78.9 14 0.00029 49.2 12.0 130 405-572 344-474 (988)
315 PRK06305 DNA polymerase III su 78.6 14 0.00031 45.0 11.4 42 412-453 22-66 (451)
316 PRK00771 signal recognition pa 78.0 14 0.00031 44.8 11.0 26 428-453 97-122 (437)
317 PHA03368 DNA packaging termina 77.0 15 0.00032 46.4 10.8 145 429-586 257-419 (738)
318 CHL00095 clpC Clp protease ATP 76.9 10 0.00022 49.8 10.0 43 409-452 184-226 (821)
319 PRK12727 flagellar biosynthesi 76.6 34 0.00074 42.5 13.7 28 426-453 350-377 (559)
320 PRK10865 protein disaggregatio 76.3 9.7 0.00021 50.1 9.6 37 416-452 187-225 (857)
321 cd01122 GP4d_helicase GP4d_hel 75.9 14 0.0003 41.3 9.7 52 423-476 27-78 (271)
322 PRK14086 dnaA chromosomal repl 75.5 18 0.00038 45.6 11.1 24 429-452 317-340 (617)
323 PF05496 RuvB_N: Holliday junc 75.3 4.4 9.6E-05 44.7 5.2 20 428-447 52-71 (233)
324 TIGR00708 cobA cob(I)alamin ad 75.3 8.5 0.00018 40.8 7.2 58 523-583 90-151 (173)
325 PTZ00293 thymidine kinase; Pro 75.3 23 0.0005 38.8 10.6 34 430-466 8-41 (211)
326 TIGR02688 conserved hypothetic 75.2 9.6 0.00021 45.8 8.3 40 410-449 193-232 (449)
327 TIGR03346 chaperone_ClpB ATP-d 75.2 11 0.00023 49.7 9.6 38 415-452 181-220 (852)
328 PF13481 AAA_25: AAA domain; P 75.0 16 0.00035 38.3 9.4 55 426-480 32-93 (193)
329 PHA03372 DNA packaging termina 74.9 5.3 0.00012 49.6 6.2 131 423-567 200-336 (668)
330 PRK06731 flhF flagellar biosyn 74.8 44 0.00095 38.0 13.2 124 427-581 76-209 (270)
331 PRK12724 flagellar biosynthesi 74.7 22 0.00047 43.0 11.1 58 526-583 295-359 (432)
332 PRK14873 primosome assembly pr 74.6 13 0.00029 47.4 9.9 79 715-796 170-250 (665)
333 PF03354 Terminase_1: Phage Te 74.5 14 0.0003 45.3 9.8 57 410-466 1-63 (477)
334 PRK08699 DNA polymerase III su 74.3 53 0.0011 38.4 14.0 46 408-453 2-48 (325)
335 COG1198 PriA Primosomal protei 74.1 7.7 0.00017 49.7 7.6 110 650-795 195-305 (730)
336 PRK12422 chromosomal replicati 73.6 11 0.00025 45.7 8.7 25 429-453 144-168 (445)
337 PRK14971 DNA polymerase III su 73.4 48 0.001 42.1 14.3 54 530-583 121-175 (614)
338 PF01443 Viral_helicase1: Vira 73.3 3.7 8E-05 44.5 4.1 42 530-574 62-103 (234)
339 PRK13342 recombination factor 73.1 20 0.00043 43.1 10.6 22 428-449 38-59 (413)
340 PF00265 TK: Thymidine kinase; 72.7 5.2 0.00011 42.5 4.9 34 430-466 5-38 (176)
341 PRK05986 cob(I)alamin adenolsy 72.6 36 0.00079 36.7 11.2 141 426-583 22-169 (191)
342 COG1474 CDC6 Cdc6-related prot 72.2 25 0.00055 41.7 10.9 48 407-454 20-70 (366)
343 COG2256 MGS1 ATPase related to 71.3 19 0.00042 42.8 9.3 20 428-447 50-69 (436)
344 PRK11823 DNA repair protein Ra 71.3 15 0.00032 44.7 9.0 63 414-479 67-130 (446)
345 cd03115 SRP The signal recogni 71.2 45 0.00097 34.6 11.5 24 430-453 4-27 (173)
346 COG1484 DnaC DNA replication p 71.2 12 0.00025 42.2 7.5 62 412-476 91-152 (254)
347 TIGR00643 recG ATP-dependent D 71.1 17 0.00037 46.1 9.8 96 715-813 266-366 (630)
348 PF00308 Bac_DnaA: Bacterial d 70.9 44 0.00095 36.6 11.8 37 530-566 97-137 (219)
349 cd00984 DnaB_C DnaB helicase C 70.6 18 0.0004 39.5 8.8 39 426-466 13-51 (242)
350 PRK10263 DNA translocase FtsK; 70.5 13 0.00028 50.2 8.6 40 428-467 1012-1052(1355)
351 PHA02244 ATPase-like protein 69.5 38 0.00082 40.3 11.3 35 424-464 117-151 (383)
352 PRK06904 replicative DNA helic 69.0 78 0.0017 38.9 14.5 128 415-544 210-348 (472)
353 TIGR01075 uvrD DNA helicase II 68.7 20 0.00044 46.2 9.9 68 407-480 4-73 (715)
354 PRK11034 clpA ATP-dependent Cl 68.3 22 0.00049 46.1 10.0 27 426-452 207-233 (758)
355 PRK05564 DNA polymerase III su 68.0 34 0.00074 39.4 10.6 23 430-452 30-52 (313)
356 PRK14970 DNA polymerase III su 67.9 52 0.0011 38.7 12.4 41 412-452 22-65 (367)
357 PRK13894 conjugal transfer ATP 67.9 28 0.0006 40.6 9.8 43 406-451 131-173 (319)
358 PRK13826 Dtr system oriT relax 67.7 33 0.00071 46.2 11.5 127 405-573 379-510 (1102)
359 TIGR03689 pup_AAA proteasome A 67.7 25 0.00055 43.5 9.9 26 426-451 216-241 (512)
360 cd01125 repA Hexameric Replica 67.1 33 0.00071 37.8 9.9 37 428-464 3-48 (239)
361 PF02606 LpxK: Tetraacyldisacc 67.0 20 0.00043 41.9 8.4 126 436-571 47-191 (326)
362 PRK07399 DNA polymerase III su 66.9 33 0.00071 39.8 10.2 43 412-454 9-54 (314)
363 COG2255 RuvB Holliday junction 66.8 15 0.00034 41.8 7.1 27 530-556 103-130 (332)
364 TIGR03877 thermo_KaiC_1 KaiC d 66.7 32 0.0007 37.9 9.8 58 414-474 8-66 (237)
365 TIGR03880 KaiC_arch_3 KaiC dom 66.6 52 0.0011 35.7 11.2 49 429-480 19-67 (224)
366 CHL00206 ycf2 Ycf2; Provisiona 66.3 16 0.00035 51.1 8.3 41 426-472 1630-1670(2281)
367 COG1435 Tdk Thymidine kinase [ 66.0 29 0.00063 37.5 8.7 108 430-567 8-118 (201)
368 PRK10867 signal recognition pa 66.0 51 0.0011 40.0 11.9 24 430-453 104-127 (433)
369 TIGR02640 gas_vesic_GvpN gas v 65.9 14 0.0003 41.5 6.8 49 410-464 5-53 (262)
370 PRK08533 flagellar accessory p 65.9 30 0.00065 38.2 9.3 41 426-469 24-64 (230)
371 PF01695 IstB_IS21: IstB-like 65.8 12 0.00025 39.7 5.8 48 424-478 45-92 (178)
372 PRK13849 putative crown gall t 65.8 31 0.00067 38.2 9.3 37 435-474 11-49 (231)
373 cd01128 rho_factor Transcripti 65.7 11 0.00023 42.4 5.7 28 415-443 6-33 (249)
374 PRK06995 flhF flagellar biosyn 65.4 30 0.00064 42.6 9.8 24 430-453 260-283 (484)
375 COG4098 comFA Superfamily II D 65.2 18 0.00039 42.1 7.3 96 443-544 291-387 (441)
376 KOG0740 AAA+-type ATPase [Post 65.2 11 0.00025 45.2 6.1 44 429-478 189-232 (428)
377 PRK10416 signal recognition pa 64.9 69 0.0015 37.3 12.3 32 430-464 118-149 (318)
378 PRK11054 helD DNA helicase IV; 64.5 16 0.00035 46.9 7.6 63 406-474 195-258 (684)
379 TIGR03878 thermo_KaiC_2 KaiC d 64.0 33 0.00071 38.6 9.2 33 429-464 39-71 (259)
380 PRK06067 flagellar accessory p 63.9 37 0.00079 37.2 9.5 48 429-479 28-75 (234)
381 PRK07276 DNA polymerase III su 63.5 88 0.0019 36.0 12.6 150 407-583 2-158 (290)
382 PRK03992 proteasome-activating 63.1 31 0.00068 41.1 9.3 38 426-469 165-202 (389)
383 PRK14712 conjugal transfer nic 62.8 35 0.00076 47.6 10.6 137 406-573 834-972 (1623)
384 COG2812 DnaX DNA polymerase II 62.8 9.1 0.0002 47.1 4.8 38 528-568 117-157 (515)
385 cd00561 CobA_CobO_BtuR ATP:cor 62.4 78 0.0017 33.2 10.9 131 431-582 7-148 (159)
386 TIGR00959 ffh signal recogniti 62.3 55 0.0012 39.7 11.2 24 429-452 102-125 (428)
387 PF12846 AAA_10: AAA-like doma 62.1 24 0.00051 39.4 7.7 46 427-475 2-47 (304)
388 CHL00176 ftsH cell division pr 61.6 38 0.00083 43.1 10.1 24 426-449 216-239 (638)
389 TIGR00580 mfd transcription-re 60.9 36 0.00079 45.2 10.1 95 715-812 482-581 (926)
390 KOG2543 Origin recognition com 60.9 1.7E+02 0.0037 35.0 14.2 143 406-571 8-161 (438)
391 PRK13833 conjugal transfer pro 60.3 20 0.00043 41.9 6.8 45 405-452 126-170 (323)
392 TIGR01242 26Sp45 26S proteasom 60.1 28 0.0006 41.1 8.1 24 426-449 156-179 (364)
393 COG0593 DnaA ATPase involved i 60.0 84 0.0018 37.9 12.0 54 530-583 175-236 (408)
394 KOG0921 Dosage compensation co 59.8 67 0.0015 41.8 11.4 137 421-568 388-535 (1282)
395 TIGR01243 CDC48 AAA family ATP 59.7 31 0.00067 44.7 9.1 24 426-449 212-235 (733)
396 PF02456 Adeno_IVa2: Adenoviru 59.6 16 0.00034 42.1 5.5 112 426-556 87-222 (369)
397 TIGR01425 SRP54_euk signal rec 59.6 1.5E+02 0.0032 36.1 14.1 32 430-464 104-135 (429)
398 PRK08760 replicative DNA helic 59.2 89 0.0019 38.5 12.5 126 415-543 218-352 (476)
399 COG0552 FtsY Signal recognitio 59.1 53 0.0011 38.4 9.7 126 427-575 139-276 (340)
400 PRK09183 transposase/IS protei 59.0 50 0.0011 37.2 9.5 42 425-469 101-142 (259)
401 PF05729 NACHT: NACHT domain 58.8 32 0.00069 34.6 7.4 26 430-455 4-29 (166)
402 TIGR00064 ftsY signal recognit 58.8 1E+02 0.0022 35.1 12.0 32 430-464 76-107 (272)
403 PRK13709 conjugal transfer nic 58.7 51 0.0011 46.5 11.2 135 406-571 966-1102(1747)
404 KOG1807 Helicases [Replication 58.6 37 0.00081 43.3 8.8 68 407-478 378-449 (1025)
405 PRK10919 ATP-dependent DNA hel 58.2 17 0.00036 46.6 6.3 66 407-478 2-69 (672)
406 COG3598 RepA RecA-family ATPas 58.1 33 0.00072 39.8 7.8 28 423-450 86-113 (402)
407 PHA02518 ParA-like protein; Pr 58.1 44 0.00096 35.4 8.7 38 434-474 9-48 (211)
408 TIGR00665 DnaB replicative DNA 58.1 1E+02 0.0022 37.2 12.7 60 413-474 182-241 (434)
409 cd02037 MRP-like MRP (Multiple 57.7 1E+02 0.0022 31.8 11.1 52 529-584 66-117 (169)
410 TIGR03499 FlhF flagellar biosy 57.4 54 0.0012 37.4 9.6 25 429-453 197-221 (282)
411 KOG0737 AAA+-type ATPase [Post 57.2 20 0.00044 42.1 6.1 24 425-448 126-149 (386)
412 COG1419 FlhF Flagellar GTP-bin 56.6 3E+02 0.0065 33.2 15.6 134 427-586 204-341 (407)
413 PRK09376 rho transcription ter 56.5 53 0.0011 39.5 9.4 37 414-451 158-194 (416)
414 PTZ00454 26S protease regulato 56.3 17 0.00037 43.6 5.5 38 426-469 179-216 (398)
415 PRK14721 flhF flagellar biosyn 56.2 92 0.002 37.7 11.6 54 530-584 269-327 (420)
416 PRK05748 replicative DNA helic 56.2 1.4E+02 0.003 36.4 13.4 128 413-543 190-327 (448)
417 COG0003 ArsA Predicted ATPase 56.1 47 0.001 38.8 8.9 56 433-491 9-71 (322)
418 PF06564 YhjQ: YhjQ protein; 55.9 24 0.00052 39.5 6.3 94 434-540 10-127 (243)
419 COG0541 Ffh Signal recognition 55.6 34 0.00075 41.2 7.7 93 430-544 104-196 (451)
420 PRK09165 replicative DNA helic 55.4 1.3E+02 0.0028 37.3 13.0 128 415-543 206-354 (497)
421 KOG0298 DEAD box-containing he 55.2 5.8 0.00013 52.5 1.4 119 734-859 1222-1340(1394)
422 COG0464 SpoVK ATPases of the A 55.1 17 0.00038 44.5 5.6 49 425-479 275-323 (494)
423 PRK13341 recombination factor 54.9 30 0.00065 44.7 7.7 23 427-449 53-75 (725)
424 TIGR00767 rho transcription te 54.4 52 0.0011 39.6 9.0 27 424-450 166-192 (415)
425 KOG1133 Helicase of the DEAD s 54.4 21 0.00045 45.0 5.8 47 405-451 13-60 (821)
426 TIGR00416 sms DNA repair prote 54.3 37 0.0008 41.5 8.0 63 414-479 81-144 (454)
427 PRK06620 hypothetical protein; 54.1 67 0.0014 35.1 9.3 99 461-568 18-122 (214)
428 PRK10689 transcription-repair 53.9 60 0.0013 44.3 10.5 95 715-811 631-729 (1147)
429 COG3973 Superfamily I DNA and 53.3 24 0.00053 43.9 6.1 61 407-474 212-277 (747)
430 TIGR03600 phage_DnaB phage rep 52.7 2E+02 0.0044 34.5 14.0 60 414-475 182-241 (421)
431 PF07015 VirC1: VirC1 protein; 52.7 47 0.001 36.9 7.7 41 435-478 11-53 (231)
432 PRK14723 flhF flagellar biosyn 52.6 93 0.002 40.4 11.4 23 430-452 189-211 (767)
433 COG1066 Sms Predicted ATP-depe 52.3 61 0.0013 38.9 8.9 86 430-544 97-182 (456)
434 PRK12726 flagellar biosynthesi 52.1 1.7E+02 0.0037 35.2 12.6 46 429-477 209-258 (407)
435 PRK08840 replicative DNA helic 52.0 2.1E+02 0.0045 35.2 13.9 60 415-476 206-265 (464)
436 TIGR01547 phage_term_2 phage t 51.7 71 0.0015 37.9 9.8 38 531-570 102-142 (396)
437 TIGR02785 addA_Gpos recombinat 51.7 67 0.0014 44.3 10.6 120 408-541 2-126 (1232)
438 PF01637 Arch_ATPase: Archaeal 51.6 43 0.00094 35.6 7.3 24 427-450 21-44 (234)
439 PRK05917 DNA polymerase III su 51.1 1.9E+02 0.0041 33.4 12.5 118 430-580 23-146 (290)
440 PRK06646 DNA polymerase III su 50.5 53 0.0011 34.3 7.3 85 714-815 10-95 (154)
441 TIGR01241 FtsH_fam ATP-depende 50.2 39 0.00085 41.6 7.5 24 426-449 88-111 (495)
442 TIGR02655 circ_KaiC circadian 50.2 67 0.0015 39.5 9.5 65 412-479 248-313 (484)
443 PF00437 T2SE: Type II/IV secr 49.7 22 0.00048 39.8 4.9 35 418-452 119-153 (270)
444 COG4626 Phage terminase-like p 49.7 69 0.0015 39.8 9.2 133 405-553 59-206 (546)
445 TIGR02760 TraI_TIGR conjugativ 49.3 83 0.0018 45.4 11.2 133 406-571 1018-1152(1960)
446 PRK09302 circadian clock prote 49.1 47 0.001 41.0 8.0 48 429-479 276-323 (509)
447 KOG1133 Helicase of the DEAD s 49.0 11 0.00024 47.3 2.3 82 734-816 630-721 (821)
448 PRK08506 replicative DNA helic 49.0 1.6E+02 0.0034 36.3 12.3 61 413-476 179-239 (472)
449 PRK12608 transcription termina 48.5 52 0.0011 39.2 7.7 42 411-453 119-160 (380)
450 PF06745 KaiC: KaiC; InterPro 48.2 41 0.00088 36.5 6.5 52 427-480 20-71 (226)
451 PRK07004 replicative DNA helic 48.1 1.5E+02 0.0032 36.4 11.9 61 414-476 201-261 (460)
452 TIGR00682 lpxK tetraacyldisacc 48.1 53 0.0012 38.1 7.7 20 435-454 39-58 (311)
453 PRK07414 cob(I)yrinic acid a,c 47.8 2.4E+02 0.0052 30.3 11.8 58 523-583 108-169 (178)
454 TIGR01243 CDC48 AAA family ATP 47.8 26 0.00056 45.4 5.6 40 427-472 488-527 (733)
455 TIGR01074 rep ATP-dependent DN 47.4 41 0.00089 42.9 7.3 67 408-480 2-70 (664)
456 PHA00012 I assembly protein 47.4 36 0.00078 39.8 6.0 24 430-453 5-28 (361)
457 KOG0386 Chromatin remodeling c 47.1 6.2E+02 0.014 34.0 17.0 84 131-215 128-212 (1157)
458 PF05127 Helicase_RecD: Helica 47.0 9.9 0.00022 40.5 1.4 120 432-568 3-123 (177)
459 TIGR02760 TraI_TIGR conjugativ 46.7 1.3E+02 0.0028 43.5 12.5 144 403-572 425-570 (1960)
460 PF05970 PIF1: PIF1-like helic 46.3 38 0.00083 40.0 6.3 60 407-469 1-62 (364)
461 PRK08939 primosomal protein Dn 45.9 49 0.0011 38.3 7.0 27 427-453 157-183 (306)
462 PRK05973 replicative DNA helic 45.9 49 0.0011 36.9 6.7 50 419-471 57-106 (237)
463 TIGR00602 rad24 checkpoint pro 45.9 1.5E+02 0.0033 37.9 11.7 49 400-448 80-132 (637)
464 PRK11773 uvrD DNA-dependent he 45.6 47 0.001 43.0 7.5 66 407-478 9-76 (721)
465 TIGR00614 recQ_fam ATP-depende 45.5 1.8E+02 0.004 35.5 12.2 78 733-812 51-135 (470)
466 KOG0731 AAA+-type ATPase conta 45.1 46 0.001 42.9 7.0 134 407-553 332-495 (774)
467 cd00268 DEADc DEAD-box helicas 45.0 3.9E+02 0.0085 28.0 15.1 73 732-810 68-149 (203)
468 KOG0780 Signal recognition par 44.7 97 0.0021 37.0 8.9 96 430-547 105-200 (483)
469 COG1200 RecG RecG-like helicas 44.4 1.2E+02 0.0025 38.7 10.1 92 715-810 293-390 (677)
470 COG4646 DNA methylase [Transcr 44.3 6.3 0.00014 47.0 -0.6 46 555-600 470-517 (637)
471 TIGR02782 TrbB_P P-type conjug 43.8 38 0.00083 39.0 5.6 44 406-452 115-158 (299)
472 cd02034 CooC The accessory pro 43.6 1.9E+02 0.0042 28.4 9.8 47 430-481 3-49 (116)
473 PRK04537 ATP-dependent RNA hel 43.6 1.6E+02 0.0034 37.2 11.5 71 733-810 84-165 (572)
474 PRK05595 replicative DNA helic 43.5 1E+02 0.0022 37.5 9.5 63 413-477 188-250 (444)
475 cd01129 PulE-GspE PulE/GspE Th 42.6 39 0.00084 38.2 5.4 43 407-451 63-105 (264)
476 COG1618 Predicted nucleotide k 42.2 1.5E+02 0.0033 31.5 9.0 124 428-565 7-136 (179)
477 TIGR03881 KaiC_arch_4 KaiC dom 42.0 71 0.0015 34.7 7.2 54 415-471 8-62 (229)
478 PF01580 FtsK_SpoIIIE: FtsK/Sp 41.8 38 0.00082 36.2 5.0 41 426-466 38-79 (205)
479 TIGR00150 HI0065_YjeE ATPase, 41.7 41 0.00089 34.2 4.8 28 423-450 19-46 (133)
480 PRK08006 replicative DNA helic 41.6 3.5E+02 0.0077 33.3 13.7 61 415-477 213-273 (471)
481 TIGR00365 monothiol glutaredox 41.5 1.2E+02 0.0026 28.9 7.7 51 732-782 10-66 (97)
482 COG1222 RPT1 ATP-dependent 26S 41.4 75 0.0016 37.6 7.3 44 424-473 183-226 (406)
483 KOG0726 26S proteasome regulat 41.1 1.1E+02 0.0025 35.1 8.4 33 408-447 208-240 (440)
484 KOG0990 Replication factor C, 41.1 33 0.00072 39.8 4.4 43 529-571 130-173 (360)
485 PF02572 CobA_CobO_BtuR: ATP:c 40.8 1.4E+02 0.003 31.8 8.8 58 523-583 89-150 (172)
486 PRK11192 ATP-dependent RNA hel 40.3 2.2E+02 0.0047 34.3 11.6 87 733-825 73-172 (434)
487 COG2909 MalT ATP-dependent tra 39.9 1.5E+02 0.0032 38.8 10.1 36 530-565 129-166 (894)
488 TIGR02012 tigrfam_recA protein 39.8 1.6E+02 0.0035 34.4 9.9 40 429-471 58-97 (321)
489 PHA00350 putative assembly pro 39.7 57 0.0012 39.2 6.3 17 430-446 5-21 (399)
490 PRK05636 replicative DNA helic 39.6 1.7E+02 0.0037 36.4 10.6 60 414-475 253-312 (505)
491 KOG2340 Uncharacterized conser 39.4 56 0.0012 40.2 6.1 108 722-831 540-652 (698)
492 TIGR02237 recomb_radB DNA repa 39.3 2.8E+02 0.006 29.5 11.2 35 430-467 16-50 (209)
493 cd03028 GRX_PICOT_like Glutare 39.3 1.4E+02 0.003 27.8 7.7 46 733-778 7-58 (90)
494 PHA02542 41 41 helicase; Provi 39.2 2.6E+02 0.0056 34.5 12.0 58 414-474 177-235 (473)
495 PF00931 NB-ARC: NB-ARC domain 38.6 1.1E+02 0.0024 34.0 8.4 42 410-451 2-44 (287)
496 PF04364 DNA_pol3_chi: DNA pol 38.4 68 0.0015 32.6 5.9 79 719-815 15-97 (137)
497 TIGR02639 ClpA ATP-dependent C 38.3 95 0.0021 40.3 8.6 22 429-450 487-508 (731)
498 KOG0442 Structure-specific end 38.3 1.6E+02 0.0035 38.3 10.0 44 712-755 347-400 (892)
499 KOG2028 ATPase related to the 38.2 1.1E+02 0.0024 36.3 8.0 38 530-569 222-259 (554)
500 PF06465 DUF1087: Domain of Un 37.7 11 0.00023 33.7 -0.0 18 969-986 46-63 (66)
No 1
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.2e-178 Score=1574.18 Aligned_cols=1042 Identities=43% Similarity=0.676 Sum_probs=851.9
Q ss_pred CChhHHHHHHHHHHHHhhhCCCCChhHHhhhhccccCCC--CCCcccc---------------c-------CCCCCCCCC
Q 001197 15 PDPVERTKSLICALNFISRNLPVPPDVYDTVSSIYYGEQ--EADDDVV---------------H-------DDGGSDEGP 70 (1125)
Q Consensus 15 ~~~~~~~~~~i~a~~~lsrn~p~p~~~~~~~~~~~~~~~--~~~~~~~---------------~-------~~~~~~~~~ 70 (1125)
++++..+|++|+||+.+||+.|+|.+++.+|.++++.-+ ....... + .-...+++|
T Consensus 12 ~~~~~~~~s~~~a~~~~sr~~~l~~~~~~~~~~~~~q~q~~~~~q~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~p 91 (1157)
T KOG0386|consen 12 MGPAGRTRSTISALSPLSRSSPLQQQQQQAVQQQQPQQQLASRQQQQQHRPLDTNLENMFAYQPGGVQLMMGGGNFLSSP 91 (1157)
T ss_pred CCccchhHHHHHhhhhhhhcCCCchhhHHHHhhhhhhhhhccHHHHhccCCCCCCcccccccCCCchhhccccccccCCC
Confidence 678999999999999999999999999999998883211 0000000 0 001112222
Q ss_pred -CCCCCCCCCCccCCccc---hhHHhHHHHhhccCCCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhHhHHHH
Q 001197 71 -VPEKASPVGSTISCGSD---LMSDFENALSKQRLKSMTGFGLTELRENRYQSHIQHRLKELEELPSSRGEELQTKCLLE 146 (1125)
Q Consensus 71 -~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~e 146 (1125)
+...+...-++..+|.. ..... ..+.-+.+..+++..+..+++++|+.+|++++++++++|.+++++++.+|++|
T Consensus 92 ~~~~~~~~~r~~~~sp~~~~~~q~~~-~~~~~~~~~~l~~~~~~~~q~~~i~~~~~~~lq~~q~~~~~~~~~~~~~a~~e 170 (1157)
T KOG0386|consen 92 GSMQMPQQSRNFFESPQQPQQQQQQG-SSTQEGKITPLDQQNINPMQQARIQFRMQAQLQELQQLARSLMGELKSSAVGE 170 (1157)
T ss_pred CcccccCCCcccccCCCchhhhcccc-cccCcCccccCCcccccHHHHHHHHHHHHHHHHHHHHhhhcchHHHhhhhhhh
Confidence 22222122233333331 11110 01111124447889999999999999999999999999999999999999999
Q ss_pred HHhccchHHHHHHHHHHHHHhHhhhhcCCCCchhhhhhhhhccCcccCCCcccccchhHHHhhHH----HHHHHHHHHHH
Q 001197 147 LYGLKLAELQSKVRSDVSSEYWLRMTCAFPEKQLFDWGMMRLRRPLYGVGDAFATEADDHFRKKR----DAERLSRLEEE 222 (1125)
Q Consensus 147 ~~~l~l~~~q~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 222 (1125)
+++|+|+++|++||..+++ |...+.++. ++.+...+.|.+| +++.+++||++
T Consensus 171 ~~~lrl~~~q~qlr~~~~~-------~~~~~~~~~-----------------~~~n~~~~~R~~~q~~~~~r~te~Le~q 226 (1157)
T KOG0386|consen 171 DQALRLLMLQMQLRNPVSQ-------PLRRDSSSE-----------------TALNPKAFKRGKRQTLSEARLTEKLEKQ 226 (1157)
T ss_pred hHHHHhHHHHHHHhhhhhc-------ccccccccc-----------------cccCHHHHhhhhhhhHHHHhHHHHHHHH
Confidence 9999999999999999995 433333221 1111122234443 34556788999
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhh----hhhhhhHHHHHHHHHHHhhhHHHHH
Q 001197 223 ARNQIETRKR----KFFAEILNAVREFQVSIQASIKRRKQRNDGVQAWHGR----QRQRATRAEKLRFQALKADDQEAYM 294 (1125)
Q Consensus 223 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~r~~~~r~~~lk~~d~e~y~ 294 (1125)
||.+.|++++ +||..++.|+++|...++....+..+.+++|++||++ ++++++|.+|+|+++|+++|+|+|+
T Consensus 227 qr~e~erk~r~~~~~~l~~~~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~~er~~~r~~~r~ek~r~~~Lk~~DeE~Y~ 306 (1157)
T KOG0386|consen 227 QRLETERKRRVKHGQFLPGNLIHPKEFPEAQQLVNNRGNKQNKAVQQWHANQERERERRIDRIEKERASALKHNDEEGYR 306 (1157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHH
Confidence 9988877654 4899999999999999999888999999999999995 4688999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCcchhhhccccCCCCCCCCCCCCCccccCCCCCC
Q 001197 295 RLVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKHVDGIEPLKDSEDDLLDLDASENGTPRDLHPEEDDIIDSDHNDD 374 (1125)
Q Consensus 295 ~~~~~~k~~~~~~ll~~t~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 374 (1125)
+|++++|+.|+++||+||++|+.+|+++|+.|+.+-. + ..++.+ ...+.+....+
T Consensus 307 kl~dq~Kd~Rl~~LL~qt~~yl~sL~s~Vk~qk~~~~-~-----~~~~~d-------------------~~~i~~~ak~~ 361 (1157)
T KOG0386|consen 307 KLQDQKKDNRLSQLLSQTDSYLPSLSSVVKGQKSENP-D-----ANSASD-------------------ISGISGSAKAD 361 (1157)
T ss_pred HHHhhccccHHHHhhhhhhHHHHHHHHHHHHhhcccc-c-----cchhhh-------------------hhhhhhhhcch
Confidence 9999999999999999999999999999999986200 0 000000 11112222233
Q ss_pred chhHHHHHHHhhhhhhhhhcccccCCCccCCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHcc
Q 001197 375 SGDLLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 454 (1125)
Q Consensus 375 ~~~~~~~~~~y~~~~h~i~e~v~~qP~~l~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~ 454 (1125)
..+...+...||.++|.|.|.|..||.++.||+|++||++||+||+++|+|++|||||||||||||+|+|++|+||++.+
T Consensus 362 ~~d~~~s~~~Yys~AH~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K 441 (1157)
T KOG0386|consen 362 VDDHAESNGSYYSTAHPIKENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHK 441 (1157)
T ss_pred hhhhhhcchhHHHhcchhhhccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHc
Confidence 33466778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCcccHHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEE
Q 001197 455 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYM 534 (1125)
Q Consensus 455 ~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~V 534 (1125)
...||+|||||+++|.||..||.+|+|++..++|.|++..|..+...+.. ++|+|++|||++++++...|.+++|.||
T Consensus 442 ~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~--gKFnVLlTtyEyiikdk~lLsKI~W~yM 519 (1157)
T KOG0386|consen 442 QMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQRH--GKFNVLLTTYEYIIKDKALLSKISWKYM 519 (1157)
T ss_pred ccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHHHhhHHHHHhc--ccceeeeeeHHHhcCCHHHHhccCCcce
Confidence 99999999999999999999999999999999999999999999988877 8999999999999999999999999999
Q ss_pred EEcCCcccCChhhHHHHHHH-ccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCc-ccCCh
Q 001197 535 IVDEGHRLKNHECALAKTIS-GYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTD 612 (1125)
Q Consensus 535 IIDEAHriKN~~SklskaL~-~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~-~~~~~ 612 (1125)
||||+|||||..|+++..+. .|.+.+|++|||||+||++.|||+||||++|.+|++...|.+||+.||.+.|. +++++
T Consensus 520 IIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLte 599 (1157)
T KOG0386|consen 520 IIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTE 599 (1157)
T ss_pred eecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccc
Confidence 99999999999999999995 88999999999999999999999999999999999999999999999999985 89999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhccccccc--CCCccchHHHHHHHH
Q 001197 613 EEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT--GTGKSKSLQNLSMQL 690 (1125)
Q Consensus 613 ee~~~~i~rL~~vL~pflLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~--~~~k~~~l~n~~~qL 690 (1125)
++..++|.|||+||+||+|||.|++|+..||+|++.+++|.||++|+.+|..+.+.+....+. +.+..+.++|.+|+|
T Consensus 600 EEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqL 679 (1157)
T KOG0386|consen 600 EETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQL 679 (1157)
T ss_pred hHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHH
Confidence 999999999999999999999999999999999999999999999999999999988877766 556778999999999
Q ss_pred HHhhCCCccccc---ccch-hhHHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCC
Q 001197 691 RKCCNHPYLFVG---EYNM-WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGS 766 (1125)
Q Consensus 691 RkicnhP~L~~~---~~~~-~~~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGs 766 (1125)
||||||||+|.. .+.. +....+++.||||++|+++|++|++.||+||+|||||+++++|++||.+++++|.|+||+
T Consensus 680 RKiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~ 759 (1157)
T KOG0386|consen 680 RKLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQ 759 (1157)
T ss_pred HHhcCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCC
Confidence 999999999943 2322 234699999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCC
Q 001197 767 TKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 846 (1125)
Q Consensus 767 ts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~T 846 (1125)
|+.++|..+++.||.|+++||+||+||+|||+|||||+||+|||||++|||++++||.+|||||||+++|+|+||++.++
T Consensus 760 TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~s 839 (1157)
T KOG0386|consen 760 TKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNS 839 (1157)
T ss_pred cchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHhcCcCCCCCCHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhcCHHHHHHHHHhhHHH
Q 001197 847 IEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEER 926 (1125)
Q Consensus 847 IEE~Il~r~~~Kl~l~~~VI~~g~~~~~s~~~d~~e~L~~il~~~~~~~~~~~~~~~~in~l~~r~~~e~~~f~~~d~~~ 926 (1125)
+||+|++++..|++++++||++|.|++.++..+|+++|+.|+..+.++.++++|++++||.|+||+|+|+++|++||+++
T Consensus 840 veE~il~~a~~Kl~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~~~~v~~~~~ln~~larseeE~~~f~~md~~r 919 (1157)
T KOG0386|consen 840 VEEKILAEAFYKLDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEEEEEVPDDEVLNSMLARSEEEFELFHKMDEER 919 (1157)
T ss_pred HHHHHHHHHHHhcCchHhhhhcccccCCCcHHHHHHHHHHHHhCCCccccccCCcHHHHHHHHhcchHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred HHhhhh---cccccccCccccccccCCChhhhhhhcccccCCCCcCCCccccccccccCCCCCHHHHHHHhhccCChh-h
Q 001197 927 RQKENY---RSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDIS-K 1002 (1125)
Q Consensus 927 ~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~-~ 1002 (1125)
..+++. ++|||+++++|+|+...... ++....++..+ ...++|+|+||+|+|+|.|||.||+++++++.+.. +
T Consensus 920 ~~~e~~~~~k~rl~ee~e~p~~i~~~~~~-~~~~~~~~~~~--~~~~rg~r~Rkev~y~d~~te~q~~k~~e~~~~~~~~ 996 (1157)
T KOG0386|consen 920 RATENQQEKKPRLVEEAELPADIYKRDQG-VERLSEEEEEE--KILGRGRRARKEVVYSDRLTEMQWLKENESVNKEDSE 996 (1157)
T ss_pred HhhhhhccccchhhhhhhcHHHHHhcchh-hhhhhhhhhhh--ccccccccccceeecccccchhhhhhhccccccccch
Confidence 887643 67999999999999887653 22221111111 13579999999999999999999999999855333 2
Q ss_pred hhhhccccccCCCCCCCCCCCCchhhhhhcccccCccccc------cCCCCccccCCCccccccccCCCCCccchhhhhh
Q 001197 1003 LSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLA------SEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKS 1076 (1125)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1125)
...+++++...+.++......+..-+.+..+.-..++++. +...-++.|...|-++ ..|++-. .-
T Consensus 997 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k-------~~~d~~~--~i 1067 (1157)
T KOG0386|consen 997 EEERRRGRKKSSLDTRPLSQKKRKLRPRSPKQALKIASTSIKYKDSAGRELSEVFLKLPSRK-------EYPDYYE--II 1067 (1157)
T ss_pred hhhhccCCCccccccccchhhcccccCCChHHHHHHHHHHHhcccccccccchhcccCcccc-------cccchHH--Hh
Confidence 2222222222233333222221100000000000111111 1112233332233111 1111111 11
Q ss_pred cccccccCCCCCcccchhhhccccCCccccCCCCCCCCCCCCCCC
Q 001197 1077 EHKGVQGSGLNGHILTWNTHRKKRSSYVVQTSSSDSRGQNSNGRG 1121 (1125)
Q Consensus 1077 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1121 (1125)
+.. +.-...+.++..|.+...|+..+.++++.+++|.-|+.|+.
T Consensus 1068 ~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~egs~ 1111 (1157)
T KOG0386|consen 1068 KKP-VAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYNEEGSR 1111 (1157)
T ss_pred cch-hhHHHHhhhccccccchHHHHHHHHHhhcchhhhhccCCce
Confidence 111 22235668899999999999999999999999997777764
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=3.7e-122 Score=1069.51 Aligned_cols=509 Identities=50% Similarity=0.895 Sum_probs=465.6
Q ss_pred cccccCCCccCCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHH
Q 001197 394 EKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI 473 (1125)
Q Consensus 394 e~v~~qP~~l~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~ 473 (1125)
.....+|..+.||+|||||++||+||+++|.|+.|||||||||||||+|||+++.|+....+..||+|||||+|++.||.
T Consensus 154 ~~~~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~ 233 (971)
T KOG0385|consen 154 NRFEDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWM 233 (971)
T ss_pred ccccCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHH
Confidence 34455899999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHH
Q 001197 474 NEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTI 553 (1125)
Q Consensus 474 ~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL 553 (1125)
+||.+|+|++.+++|+|++.+|..++..+... +.|+|+||||++++++...|.++.|.|+||||||||||.+|.+++.|
T Consensus 234 ~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~-~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~l 312 (971)
T KOG0385|consen 234 NEFKRFTPSLNVVVYHGDKEERAALRRDIMLP-GRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKIL 312 (971)
T ss_pred HHHHHhCCCcceEEEeCCHHHHHHHHHHhhcc-CCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHH
Confidence 99999999999999999999999988877766 69999999999999999999999999999999999999999999999
Q ss_pred HccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 001197 554 SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 633 (1125)
Q Consensus 554 ~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR 633 (1125)
+.|.+.+||+|||||+|||+.|||+|||||.|++|++.+.|..||..... +.....+.+||.+|+||+|||
T Consensus 313 r~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~---------~~~~e~v~~Lh~vL~pFlLRR 383 (971)
T KOG0385|consen 313 REFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNC---------EGDQELVSRLHKVLRPFLLRR 383 (971)
T ss_pred HHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccc---------ccCHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999986421 122337899999999999999
Q ss_pred hHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCC-CccchHHHHHHHHHHhhCCCccccccc--ch-hhH
Q 001197 634 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQLRKCCNHPYLFVGEY--NM-WRK 709 (1125)
Q Consensus 634 ~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~-~k~~~l~n~~~qLRkicnhP~L~~~~~--~~-~~~ 709 (1125)
+|.+|+..|||+.+.+++|+||..|+.+|..++......+.... +....++|++|||||||||||||.+.. .+ ...
T Consensus 384 ~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttd 463 (971)
T KOG0385|consen 384 IKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTD 463 (971)
T ss_pred HHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcc
Confidence 99999999999999999999999999999999887665554333 355789999999999999999999832 22 347
Q ss_pred HHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEE
Q 001197 710 EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMF 789 (1125)
Q Consensus 710 ~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~Vf 789 (1125)
++++.+|||+.+|+++|++|++.||||||||||+.|||||++||.++||.||||||+|+.++|...|+.||++++.+|||
T Consensus 464 ehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiF 543 (971)
T KOG0385|consen 464 EHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIF 543 (971)
T ss_pred hHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHhhHHHHHHhcC
Q 001197 790 LLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG 869 (1125)
Q Consensus 790 LLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~r~~~Kl~l~~~VI~~g 869 (1125)
||||+|||+||||++||+||+||+||||++++||++|||||||+++|.||||||++||||+|++|+..|+.|+..||+.|
T Consensus 544 lLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g 623 (971)
T KOG0385|consen 544 LLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQG 623 (971)
T ss_pred EEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC-CCCCHHHHHHHHHHHHHhcccCC---CCCCCCHHHHHHHHhcCHH
Q 001197 870 LFN-TTSTAQDRREMLKEIMRRGTSSL---GTDVPSEREINRLAARSDE 914 (1125)
Q Consensus 870 ~~~-~~s~~~d~~e~L~~il~~~~~~~---~~~~~~~~~in~l~~r~~~ 914 (1125)
... ..+.. +....+-.|+++|+... .+...++ +|+.|+.++++
T Consensus 624 ~l~~~~~~~-~~k~~~l~~~r~g~~~~f~~~es~~~d-Did~il~~~e~ 670 (971)
T KOG0385|consen 624 RLEEQKSNG-LGKDELLNLLRFGADPVFESKESTISD-DIDRILERGEE 670 (971)
T ss_pred chhhhhccc-cchHHHHHHHHcCchhhhhhcccccch-hHHHHHHhhhh
Confidence 443 33333 33444557788887642 1222334 99999999985
No 3
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=1.3e-110 Score=1011.43 Aligned_cols=507 Identities=47% Similarity=0.810 Sum_probs=463.3
Q ss_pred cccccCCCccCCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHH
Q 001197 394 EKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI 473 (1125)
Q Consensus 394 e~v~~qP~~l~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~ 473 (1125)
.++..||.++.|.+||+||++||+||+..|.++.|||||||||||||+|+|+++.+++......||+|||||+|++.+|.
T Consensus 357 ~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~ 436 (1373)
T KOG0384|consen 357 RKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWE 436 (1373)
T ss_pred HHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcC-----CccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhH
Q 001197 474 NEFSTWAPSIAAVVYDGRPDERKAMREEFFSERG-----RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECA 548 (1125)
Q Consensus 474 ~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~~~~-----~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~Sk 548 (1125)
.||..|+ .+++++|+|+...|..++..-+.... +|+++||||+++.+|...|..++|.+++||||||+||..|+
T Consensus 437 ~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~ 515 (1373)
T KOG0384|consen 437 REFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESK 515 (1373)
T ss_pred HHHHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHH
Confidence 9999999 99999999999999988876544333 69999999999999999999999999999999999999999
Q ss_pred HHHHHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhh
Q 001197 549 LAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 628 (1125)
Q Consensus 549 lskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~p 628 (1125)
++..|..|...+|+++||||+||++.|||+|++||+|.-|.+...|...|+. +....+..||..|+|
T Consensus 516 l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~-------------~~e~~~~~L~~~L~P 582 (1373)
T KOG0384|consen 516 LYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE-------------ETEEQVRKLQQILKP 582 (1373)
T ss_pred HHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc-------------hhHHHHHHHHHHhhH
Confidence 9999999999999999999999999999999999999999999999887732 233458899999999
Q ss_pred hhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCC-CccchHHHHHHHHHHhhCCCcccccccch-
Q 001197 629 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQLRKCCNHPYLFVGEYNM- 706 (1125)
Q Consensus 629 flLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~-~k~~~l~n~~~qLRkicnhP~L~~~~~~~- 706 (1125)
|||||+|+||++.||+|.+.++.|+||+.|+.+|+.|++.+...+..|. +...++.|++|.|+||||||||+.+.-..
T Consensus 583 ~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~ 662 (1373)
T KOG0384|consen 583 FLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKI 662 (1373)
T ss_pred HHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHH
Confidence 9999999999999999999999999999999999999999888876654 44578999999999999999999873221
Q ss_pred ----------hhHHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHH
Q 001197 707 ----------WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLL 776 (1125)
Q Consensus 707 ----------~~~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I 776 (1125)
..-..++.+|||+.+|++||++|++.||||||||||+.|||||++||..++|+|.||||++..+-|+.+|
T Consensus 663 ~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AI 742 (1373)
T KOG0384|consen 663 LGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAI 742 (1373)
T ss_pred HHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHH
Confidence 2345679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 001197 777 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 856 (1125)
Q Consensus 777 ~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~r~~ 856 (1125)
+.||+++++.|||||||||||+||||++||||||||+||||+.++||++|||||||++.|.||||||.|||||.|+++|.
T Consensus 743 DhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk 822 (1373)
T KOG0384|consen 743 DHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAK 822 (1373)
T ss_pred HhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHhcCcCCCC--CCHHHHHHHHHHHHHhcccCCC------CCCCCHHHHHHHHhcCHH
Q 001197 857 QKMGIDAKVIQAGLFNTT--STAQDRREMLKEIMRRGTSSLG------TDVPSEREINRLAARSDE 914 (1125)
Q Consensus 857 ~Kl~l~~~VI~~g~~~~~--s~~~d~~e~L~~il~~~~~~~~------~~~~~~~~in~l~~r~~~ 914 (1125)
.|+.|+.+|||.+..+.. ....-..+.|++||++|+..+. ...+.+.+|++||.|.+.
T Consensus 823 ~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~s~~~e~DIDeIL~rae~ 888 (1373)
T KOG0384|consen 823 LKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEESKFCEMDIDEILERAET 888 (1373)
T ss_pred HHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhccccccccccccCHHHHHhhccc
Confidence 999999999999876322 1222234568999999987542 123445789999988763
No 4
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.5e-98 Score=939.69 Aligned_cols=571 Identities=45% Similarity=0.803 Sum_probs=487.2
Q ss_pred ccccCCCccCCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHH
Q 001197 395 KVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 474 (1125)
Q Consensus 395 ~v~~qP~~l~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~ 474 (1125)
.+..+|..+. ++|||||++||+||+.++.++.|||||||||||||+|||+++.++....+..||+|||||++++.||..
T Consensus 158 ~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~ 236 (1033)
T PLN03142 158 RLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMN 236 (1033)
T ss_pred eeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHH
Confidence 4567898887 799999999999999999999999999999999999999999999887788899999999999999999
Q ss_pred HHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHH
Q 001197 475 EFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTIS 554 (1125)
Q Consensus 475 Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~ 554 (1125)
||.+|+|.+.+++|+|+...|.......... +.|+||||||+++.++...|..+.|++|||||||+|||..|++++++.
T Consensus 237 Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~~~-~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr 315 (1033)
T PLN03142 237 EIRRFCPVLRAVKFHGNPEERAHQREELLVA-GKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMR 315 (1033)
T ss_pred HHHHHCCCCceEEEeCCHHHHHHHHHHHhcc-cCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHH
Confidence 9999999999999999998887765544433 679999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhh
Q 001197 555 GYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 634 (1125)
Q Consensus 555 ~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~ 634 (1125)
.+.+.+||+|||||++|++.|||+||+||.|++|++...|..||..+.. ......+.+||.+|+||++||+
T Consensus 316 ~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~---------~~~~e~i~~L~~~L~pf~LRR~ 386 (1033)
T PLN03142 316 LFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGE---------NDQQEVVQQLHKVLRPFLLRRL 386 (1033)
T ss_pred HhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccc---------cchHHHHHHHHHHhhHHHhhhh
Confidence 9999999999999999999999999999999999999999999986321 1234467899999999999999
Q ss_pred HHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccc---hhhHHH
Q 001197 635 KDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYN---MWRKEE 711 (1125)
Q Consensus 635 K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~---~~~~~~ 711 (1125)
|.+|...||++.+.+++|.||+.|+.+|..+.......+..+. ....+.+++|+||+|||||+++.+... ......
T Consensus 387 KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~-~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~ 465 (1033)
T PLN03142 387 KSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGG-ERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEH 465 (1033)
T ss_pred HHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhH
Confidence 9999999999999999999999999999999876544443332 345688899999999999999876321 234567
Q ss_pred HHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEe
Q 001197 712 IIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 791 (1125)
Q Consensus 712 li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLL 791 (1125)
++..|+|+.+|+++|+.+...|+||||||||+.++++|+++|..+|+.|++|||+++..+|+.+|+.||.+++..+||||
T Consensus 466 lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLL 545 (1033)
T PLN03142 466 LVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLL 545 (1033)
T ss_pred HhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred eccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHhhHHHHHHhcCcC
Q 001197 792 STRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLF 871 (1125)
Q Consensus 792 STrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~r~~~Kl~l~~~VI~~g~~ 871 (1125)
||+|||+||||+.||+||+||+||||+.++||+||||||||+++|.|||||+.|||||+|++++..|+.++..||+.|.+
T Consensus 546 STrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~ 625 (1033)
T PLN03142 546 STRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRL 625 (1033)
T ss_pred eccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHhcccCC---CCCCCCHHHHHHHHhcCHHHHH-HHHHhhHHHHHhhhhcccccccCccccccc
Q 001197 872 NTTSTAQDRREMLKEIMRRGTSSL---GTDVPSEREINRLAARSDEEFW-LFEKMDEERRQKENYRSRLMEDHEVPEWAY 947 (1125)
Q Consensus 872 ~~~s~~~d~~e~L~~il~~~~~~~---~~~~~~~~~in~l~~r~~~e~~-~f~~~d~~~~~~~~~~~~l~~~~~~~~~~~ 947 (1125)
..... . ..+.|.+|+++|+..+ .+...++++|+.||+|+++... +.++|..-.. ......+-....+.+|.+
T Consensus 626 ~~~~~-~-~~~eL~~ll~~ga~~~f~~~~~~~~~~did~il~~~~~~~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~g 701 (1033)
T PLN03142 626 AEQKT-V-NKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTE--DAIKFKMDDTAELYDFDD 701 (1033)
T ss_pred ccccc-C-CHHHHHHHHHhChHHhhhccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHhch--hhhcccccCCcceeeecC
Confidence 54421 1 2344668888887643 2345789999999999997653 3344432211 111223333457888987
Q ss_pred cCCChhhhhhhcccccCCCCcCCCccccccccccCCC
Q 001197 948 SAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADT 984 (1125)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~~~~~~~~ 984 (1125)
.+..... +....+.. ...|+..+||+||. +|+..
T Consensus 702 ~~~~~~~-~~~~~~~~-~~~~~~~~~re~~~-~~~~~ 735 (1033)
T PLN03142 702 EDDKDEN-KLDFKKIV-SDNWIDPPKRERKR-NYSES 735 (1033)
T ss_pred ccccchh-hhhHhhhc-cccccccchhhhhc-ccchh
Confidence 6553211 11111111 23477889999994 67643
No 5
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=2.3e-99 Score=895.35 Aligned_cols=470 Identities=46% Similarity=0.808 Sum_probs=429.1
Q ss_pred CCccCCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhh
Q 001197 400 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 479 (1125)
Q Consensus 400 P~~l~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~ 479 (1125)
|.++ -|+||+||..|++||+.+|++++|||||||||||||||+|+|++||...+++.||+|||||++++.||.-||++|
T Consensus 609 PsLL-rGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRw 687 (1958)
T KOG0391|consen 609 PSLL-RGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRW 687 (1958)
T ss_pred hHHH-HHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhh
Confidence 4444 479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHccccc
Q 001197 480 APSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ 559 (1125)
Q Consensus 480 ~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l~s~ 559 (1125)
||+++++.|.|+..+|+..+..|... ..|+|+||+|..+..|...|...+|.|+||||||+|||..|..+++|..|++.
T Consensus 688 cPglKILTYyGs~kErkeKRqgW~kP-naFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsq 766 (1958)
T KOG0391|consen 688 CPGLKILTYYGSHKERKEKRQGWAKP-NAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQ 766 (1958)
T ss_pred CCcceEeeecCCHHHHHHHhhcccCC-CeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhccchh
Confidence 99999999999999999999888766 78999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHHHHh
Q 001197 560 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVE 639 (1125)
Q Consensus 560 ~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~dV~ 639 (1125)
+||+|||||+||++.|||+||+||+|.+|.+.+.|..||.+|... ..+.+.+-....+.|||+||+||+|||+|.||+
T Consensus 767 rRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltg--miEgsqeyn~klV~RLHkVlrPfiLRRlK~dVE 844 (1958)
T KOG0391|consen 767 RRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTG--MIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVE 844 (1958)
T ss_pred heeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchh--hcccchhhchHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999753 334444445678999999999999999999999
Q ss_pred hhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccc------------cchh
Q 001197 640 KYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGE------------YNMW 707 (1125)
Q Consensus 640 ~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~------------~~~~ 707 (1125)
++||.|.+++|+|.+|.-|+.+|+.++........-..|.-.++.|++|+||||||||.||... +...
T Consensus 845 KQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~a 924 (1958)
T KOG0391|consen 845 KQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSA 924 (1958)
T ss_pred HhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceecccc
Confidence 9999999999999999999999999886543322223445567889999999999999987310 0000
Q ss_pred -------------------------------------------------------------------h----------HH
Q 001197 708 -------------------------------------------------------------------R----------KE 710 (1125)
Q Consensus 708 -------------------------------------------------------------------~----------~~ 710 (1125)
. .+
T Consensus 925 s~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphte 1004 (1958)
T KOG0391|consen 925 SKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTE 1004 (1958)
T ss_pred ccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccccccccccchhcccCCccc
Confidence 0 00
Q ss_pred H-------------------H-----------------------------------------------------------
Q 001197 711 E-------------------I----------------------------------------------------------- 712 (1125)
Q Consensus 711 ~-------------------l----------------------------------------------------------- 712 (1125)
. +
T Consensus 1005 ea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a 1084 (1958)
T KOG0391|consen 1005 EASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGA 1084 (1958)
T ss_pred cccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcceecchh
Confidence 0 0
Q ss_pred --------------------------------------------------------------------------------
Q 001197 713 -------------------------------------------------------------------------------- 712 (1125)
Q Consensus 713 -------------------------------------------------------------------------------- 712 (1125)
T Consensus 1085 ~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~ 1164 (1958)
T KOG0391|consen 1085 LGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEG 1164 (1958)
T ss_pred hccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 001197 713 -------------------------------------------------------------------------------- 712 (1125)
Q Consensus 713 -------------------------------------------------------------------------------- 712 (1125)
T Consensus 1165 i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~~~~q~~~~ 1244 (1958)
T KOG0391|consen 1165 IVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQRQTTAP 1244 (1958)
T ss_pred hccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhccccchhhccch
Confidence
Q ss_pred -----------HhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcC
Q 001197 713 -----------IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNA 781 (1125)
Q Consensus 713 -----------i~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~ 781 (1125)
--.+||++.|.-+|.+|+..|||||||+||+.|||+|+.+|.++|+.|+||||+|+.++|+.++++||.
T Consensus 1245 r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNa 1324 (1958)
T KOG0391|consen 1245 RLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNA 1324 (1958)
T ss_pred hhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcC
Confidence 001789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHhhH
Q 001197 782 PDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGI 861 (1125)
Q Consensus 782 ~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~r~~~Kl~l 861 (1125)
|..+|||||||++||+||||++||||||||+||||.+|.||++|||||||+++|+|||||+++||||.|+..+.+|..|
T Consensus 1325 -D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanqKr~L 1403 (1958)
T KOG0391|consen 1325 -DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQKRML 1403 (1958)
T ss_pred -CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcCCCC
Q 001197 862 DAKVIQAGLFNTT 874 (1125)
Q Consensus 862 ~~~VI~~g~~~~~ 874 (1125)
++.+|++|.|...
T Consensus 1404 ~evaiqggdfTt~ 1416 (1958)
T KOG0391|consen 1404 DEVAIQGGDFTTA 1416 (1958)
T ss_pred HHHhhccCCccHH
Confidence 9999999998654
No 6
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=2.4e-97 Score=866.01 Aligned_cols=472 Identities=46% Similarity=0.760 Sum_probs=417.0
Q ss_pred cccCCCccC-CCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHH
Q 001197 396 VTEQPTLLQ-GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 474 (1125)
Q Consensus 396 v~~qP~~l~-g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~ 474 (1125)
+.+||..+. |.+|+|||+-||+||.-+|.++++||||||||||||+|+||+++||.+.+. .||+|||||.|++.||.+
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~-~gpHLVVvPsSTleNWlr 465 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGN-PGPHLVVVPSSTLENWLR 465 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCC-CCCcEEEecchhHHHHHH
Confidence 566888775 679999999999999999999999999999999999999999999998754 899999999999999999
Q ss_pred HHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHH---HhHHhhhccCeeEEEEcCCcccCChhhHHHH
Q 001197 475 EFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIM---RDRQYLKKVQWIYMIVDEGHRLKNHECALAK 551 (1125)
Q Consensus 475 Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~---kd~~~L~ki~w~~VIIDEAHriKN~~Sklsk 551 (1125)
||.+|||+++|..|+|+..+|..++..+.....+|||+||||..+. .|+.+|+..+|+++|.||||.+||..|..++
T Consensus 466 Ef~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~ 545 (941)
T KOG0389|consen 466 EFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYK 545 (941)
T ss_pred HHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHH
Confidence 9999999999999999999999999988887789999999999985 4678999999999999999999999999999
Q ss_pred HHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCC-hHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhh
Q 001197 552 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNS-VENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 630 (1125)
Q Consensus 552 aL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s-~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pfl 630 (1125)
.|..+++++||+|||||+|||+.|||+||.|++|.+|.+ ...+...|...-...+..+-.- -....|.|-..++.||+
T Consensus 546 ~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~-l~qerIsrAK~im~PFI 624 (941)
T KOG0389|consen 546 HLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENAL-LSQERISRAKTIMKPFI 624 (941)
T ss_pred HhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHH-HHHHHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999974 4557766665432211111000 01225788899999999
Q ss_pred hhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCc--cchHHHHHHHHHHhhCCCcccccccchhh
Q 001197 631 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGK--SKSLQNLSMQLRKCCNHPYLFVGEYNMWR 708 (1125)
Q Consensus 631 LRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k--~~~l~n~~~qLRkicnhP~L~~~~~~~~~ 708 (1125)
|||.|.+|.++||||..++.+|+|++.|+.+|..+.+.........+.. ... .+++|+||+++|||.|+-..|....
T Consensus 625 LRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~-~~vlmqlRK~AnHPLL~R~~Y~de~ 703 (941)
T KOG0389|consen 625 LRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKS-GNVLMQLRKAANHPLLFRSIYTDEK 703 (941)
T ss_pred HHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccccc-chHHHHHHHHhcChhHHHHhccHHH
Confidence 9999999999999999999999999999999999887653322221111 112 6799999999999999854322110
Q ss_pred -------------------------------------------------HHHHHhhcchHHHHHHHhHHhhhCCCEEEEE
Q 001197 709 -------------------------------------------------KEEIIRASGKFELLDRLLPKLRKSGHRVLLF 739 (1125)
Q Consensus 709 -------------------------------------------------~~~li~~S~Kle~L~~lL~kl~~~g~KVLIF 739 (1125)
.+..|-.|||+..|..+|++++..|+|||||
T Consensus 704 L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiF 783 (941)
T KOG0389|consen 704 LRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIF 783 (941)
T ss_pred HHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEe
Confidence 1123567999999999999999999999999
Q ss_pred eccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhh
Q 001197 740 SQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQM 819 (1125)
Q Consensus 740 sq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~ 819 (1125)
||||+|||||+.+|...++.|+||||+|...+|+.+|++||. +.++|||||||+|||.||||++||+||++|.++||..
T Consensus 784 SQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~-d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~d 862 (941)
T KOG0389|consen 784 SQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNT-DKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYD 862 (941)
T ss_pred eHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhcc-CCceEEEEEeeccCcceecccccceEEEeecCCCCcc
Confidence 999999999999999999999999999999999999999999 4569999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHhhHHHHHHhcCcC
Q 001197 820 DQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLF 871 (1125)
Q Consensus 820 d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~r~~~Kl~l~~~VI~~g~~ 871 (1125)
+.||.|||||+||+|+|+|||||+++||||.|+..++.|+.|+..+-..+..
T Consensus 863 D~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~ 914 (941)
T KOG0389|consen 863 DKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKG 914 (941)
T ss_pred cchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCccc
Confidence 9999999999999999999999999999999999999999999998776654
No 7
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=5.7e-97 Score=846.58 Aligned_cols=465 Identities=46% Similarity=0.831 Sum_probs=422.4
Q ss_pred ccccCCCccCCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHH
Q 001197 395 KVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 474 (1125)
Q Consensus 395 ~v~~qP~~l~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~ 474 (1125)
...+||.++. ++|++||++|++||+.+|.+|.|||||||||||||+|+|+++++|.+.+++.||||||+|.|++.||..
T Consensus 556 ~tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaq 634 (1185)
T KOG0388|consen 556 RTVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQ 634 (1185)
T ss_pred eeccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHH
Confidence 3457898886 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCceEEEEcCChhHHHHHHHHHH-----hhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHH
Q 001197 475 EFSTWAPSIAAVVYDGRPDERKAMREEFF-----SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECAL 549 (1125)
Q Consensus 475 Ef~k~~p~~~vivy~G~~~~R~~l~~~~~-----~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~Skl 549 (1125)
||.+|+|.++++-|-|++.+|+.++..|- .....|+|+||||.++..|..+|.+++|.|||+|||+-||...|..
T Consensus 635 EisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~R 714 (1185)
T KOG0388|consen 635 EISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSSR 714 (1185)
T ss_pred HHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhhH
Confidence 99999999999999999999998876432 2347899999999999999999999999999999999999999999
Q ss_pred HHHHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhh
Q 001197 550 AKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPF 629 (1125)
Q Consensus 550 skaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pf 629 (1125)
++.|..|+|+.||+||||||||++.|||+||+|++|.+|.+...|.+||.+.+........+- ....+.|||.+|+||
T Consensus 715 WKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tl--neqqL~RLH~ILKPF 792 (1185)
T KOG0388|consen 715 WKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTL--NEQQLQRLHAILKPF 792 (1185)
T ss_pred HHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCc--CHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999999999999999999999999877643222111 123578999999999
Q ss_pred hhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCccccccc-----
Q 001197 630 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEY----- 704 (1125)
Q Consensus 630 lLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~----- 704 (1125)
||||.|++|...|..|.++.++|.+|.-|+.+|+.+..... ...+.+++||||++||||-||...-
T Consensus 793 MLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS---------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L 863 (1185)
T KOG0388|consen 793 MLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS---------SMEMENLVMQLRKVCNHPDLFERLEPRSGL 863 (1185)
T ss_pred HHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHhcCChHHHhhcCCccee
Confidence 99999999999999999999999999999999999875431 2344569999999999998874200
Q ss_pred -------------------------------------chhh-------------------------------------HH
Q 001197 705 -------------------------------------NMWR-------------------------------------KE 710 (1125)
Q Consensus 705 -------------------------------------~~~~-------------------------------------~~ 710 (1125)
..+. .+
T Consensus 864 ~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e 943 (1185)
T KOG0388|consen 864 SLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVE 943 (1185)
T ss_pred EEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHH
Confidence 0000 00
Q ss_pred ------------------------------------------------------------------------------HH
Q 001197 711 ------------------------------------------------------------------------------EI 712 (1125)
Q Consensus 711 ------------------------------------------------------------------------------~l 712 (1125)
..
T Consensus 944 ~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~F 1023 (1185)
T KOG0388|consen 944 EAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTF 1023 (1185)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhh
Confidence 00
Q ss_pred HhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEee
Q 001197 713 IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 792 (1125)
Q Consensus 713 i~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLS 792 (1125)
+..|||+..|+.+|++|++.|||||+|+|||.|+|+|++||.++||.|+|+||+.+..+|..++.+|+. +++||||||
T Consensus 1024 itdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~--sdiFvFLLS 1101 (1185)
T KOG0388|consen 1024 ITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA--SDIFVFLLS 1101 (1185)
T ss_pred hccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC--CceEEEEEe
Confidence 334899999999999999999999999999999999999999999999999999999999999999999 569999999
Q ss_pred ccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHhhHHHHHHhcCcCC
Q 001197 793 TRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFN 872 (1125)
Q Consensus 793 TrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~r~~~Kl~l~~~VI~~g~~~ 872 (1125)
|+|||+||||++||+||+||++|||..+.||++||||.||++.|+||||++.+||||+|++++.+|..+...||.+|.|.
T Consensus 1102 TRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~~~q 1181 (1185)
T KOG0388|consen 1102 TRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHGNIFQ 1181 (1185)
T ss_pred cccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred C
Q 001197 873 T 873 (1125)
Q Consensus 873 ~ 873 (1125)
+
T Consensus 1182 g 1182 (1185)
T KOG0388|consen 1182 G 1182 (1185)
T ss_pred C
Confidence 4
No 8
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=6.4e-93 Score=830.29 Aligned_cols=479 Identities=37% Similarity=0.636 Sum_probs=414.5
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceE
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAA 485 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~v 485 (1125)
..|+|||.+||+||+.+|.++.||||+||||||||||+|++++.|.......+|+|||||.+++.||..||.+|+|.++|
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~w~p~~rv 283 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQTWWPPFRV 283 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHHhCcceEE
Confidence 48999999999999999999999999999999999999999999998866779999999999999999999999999999
Q ss_pred EEEcCChhH-HHHH------HHH--HHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHcc
Q 001197 486 VVYDGRPDE-RKAM------REE--FFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY 556 (1125)
Q Consensus 486 ivy~G~~~~-R~~l------~~~--~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l 556 (1125)
.+|+|+... |... ... .......-.|+||||+.+....+.+..+.|+|||+||||+|+|++|+.+.+|+.+
T Consensus 284 ~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~islackki 363 (923)
T KOG0387|consen 284 FILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSKISLACKKI 363 (923)
T ss_pred EEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccHHHHHHHhc
Confidence 999987652 1000 000 0111134569999999999998999999999999999999999999999999999
Q ss_pred ccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHH---HHHHHHHHhhhhhhhhhh
Q 001197 557 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQ---LLIIRRLHHVIRPFILRR 633 (1125)
Q Consensus 557 ~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~---~~~i~rL~~vL~pflLRR 633 (1125)
++.+|++|||||+|||+.|||+|++|+.|+.+++...|.+.|..|+..++....++... ......|+.+|.||+|||
T Consensus 364 ~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR 443 (923)
T KOG0387|consen 364 RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRR 443 (923)
T ss_pred cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988877776554 344556999999999999
Q ss_pred hHHHHhh-hCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCccccccc--chhh--
Q 001197 634 KKDEVEK-YLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEY--NMWR-- 708 (1125)
Q Consensus 634 ~K~dV~~-~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~--~~~~-- 708 (1125)
+|.+|.. .||.|.+.+++|.||+.|+.+|+.+.....+.- .-.++...+. -+.-||++||||-++.+.. ....
T Consensus 444 ~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~-i~ng~~~~l~-Gi~iLrkICnHPdll~~~~~~~~~~~D 521 (923)
T KOG0387|consen 444 MKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNK-ILNGKRNCLS-GIDILRKICNHPDLLDRRDEDEKQGPD 521 (923)
T ss_pred HHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHH-HHcCCcccee-chHHHHhhcCCcccccCcccccccCCC
Confidence 9999999 999999999999999999999999876543211 0111222222 2335899999999988741 1111
Q ss_pred HHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHH-hCCCeEEEecCCCCHHHHHHHHHHHcCCCCCce
Q 001197 709 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLK-LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 787 (1125)
Q Consensus 709 ~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~-~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~ 787 (1125)
.+..+..|||+++|..+|..++..|+|||+|+|..+|+|||+.+|. ..||.|+|+||+|+...|+.+|++||++. .++
T Consensus 522 ~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~-s~~ 600 (923)
T KOG0387|consen 522 YEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDE-SIF 600 (923)
T ss_pred cCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCC-ceE
Confidence 1145678999999999999999999999999999999999999999 79999999999999999999999999854 489
Q ss_pred EEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHhhHHHHHHh
Q 001197 788 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQ 867 (1125)
Q Consensus 788 VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~r~~~Kl~l~~~VI~ 867 (1125)
||||+|++||+||||++||+||||||+|||..+.||..||+||||+|.|.||||++.+||||+||.++..|..|.+.++.
T Consensus 601 VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~ 680 (923)
T KOG0387|consen 601 VFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILK 680 (923)
T ss_pred EEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCcCCCCCCHHHHHHHHHHHHHhc
Q 001197 868 AGLFNTTSTAQDRREMLKEIMRRG 891 (1125)
Q Consensus 868 ~g~~~~~s~~~d~~e~L~~il~~~ 891 (1125)
.-+-...+...+ |.+++..+
T Consensus 681 ~p~q~RfF~~~d----l~dLFsl~ 700 (923)
T KOG0387|consen 681 NPEQRRFFKGND----LHDLFSLK 700 (923)
T ss_pred CHHHhhhccccc----HHHHhCCC
Confidence 654444343333 44555433
No 9
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=3.7e-88 Score=811.61 Aligned_cols=495 Identities=35% Similarity=0.607 Sum_probs=426.3
Q ss_pred CCCCCchhHHHHHHHhhhhhhhhhccccc----CCCccCCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHH
Q 001197 370 DHNDDSGDLLEGQRQYNSAIHSIEEKVTE----QPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIA 445 (1125)
Q Consensus 370 d~~~~~~~~~~~~~~y~~~~h~i~e~v~~----qP~~l~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIa 445 (1125)
++.+-+.+++.....+...+.++-..-.- .|.-+ ..+||.||++||+|+..+..-+++|||||+||||||+|+|+
T Consensus 935 ~p~gls~eLl~~ke~erkFLeqlldpski~~y~Ip~pI-~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQtic 1013 (1549)
T KOG0392|consen 935 DPTGLSKELLASKEEERKFLEQLLDPSKIPEYKIPVPI-SAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTIC 1013 (1549)
T ss_pred CCccccHHHHHhHHHHHHHHHHhcCcccCCccccccch-hHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHH
Confidence 34566778888877777766665432211 22222 36999999999999999999999999999999999999999
Q ss_pred HHHHHHHcc------CCCCCEEEEcCcccHHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHH
Q 001197 446 LIAYLLENK------GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLI 519 (1125)
Q Consensus 446 li~~L~e~~------~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l 519 (1125)
+++.-.... -..-|.|||||.++..+|+.|+.+|+|-++++.|.|.+..|..++.+. .+.+|+||+|+.+
T Consensus 1014 ilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf~pfL~v~~yvg~p~~r~~lR~q~----~~~~iiVtSYDv~ 1089 (1549)
T KOG0392|consen 1014 ILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKFFPFLKVLQYVGPPAERRELRDQY----KNANIIVTSYDVV 1089 (1549)
T ss_pred HHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHhcchhhhhhhcCChHHHHHHHhhc----cccceEEeeHHHH
Confidence 987543322 123589999999999999999999999999999999999999988765 5679999999999
Q ss_pred HHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhc
Q 001197 520 MRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFN 599 (1125)
Q Consensus 520 ~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~ 599 (1125)
++|..+|.++.|.|+|+||||-|||..++++++++.+.+.||++|||||+|||+.|||+|++||+|+++++.+.|.+.|.
T Consensus 1090 RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~ 1169 (1549)
T KOG0392|consen 1090 RNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFG 1169 (1549)
T ss_pred HHHHHHHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccCC---hHHHHHHHHHHHhhhhhhhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccc--
Q 001197 600 APFKDRGQVALT---DEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD-- 674 (1125)
Q Consensus 600 ~p~~~~~~~~~~---~ee~~~~i~rL~~vL~pflLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~-- 674 (1125)
+|+........+ .|....++..||+.+-||||||+|.||.++||||+.+.++|+|++.|+++|+.+.........
T Consensus 1170 kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~ 1249 (1549)
T KOG0392|consen 1170 KPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQ 1249 (1549)
T ss_pred chhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccc
Confidence 998765443333 345678899999999999999999999999999999999999999999999999877433221
Q ss_pred --cCC---C-ccchHHHHHHHHHHhhCCCcccccccchh----------hHHHH--HhhcchHHHHHHHhHHhh------
Q 001197 675 --TGT---G-KSKSLQNLSMQLRKCCNHPYLFVGEYNMW----------RKEEI--IRASGKFELLDRLLPKLR------ 730 (1125)
Q Consensus 675 --~~~---~-k~~~l~n~~~qLRkicnhP~L~~~~~~~~----------~~~~l--i~~S~Kle~L~~lL~kl~------ 730 (1125)
.+. + .....+..+..||+.||||.+.-....+. ....+ +..|+|+.+|..+|..+-
T Consensus 1250 ~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~ 1329 (1549)
T KOG0392|consen 1250 IDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSD 1329 (1549)
T ss_pred cccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCc
Confidence 111 1 12334455668999999999987642211 01222 678999999999998762
Q ss_pred --------hCCCEEEEEeccchHHHHHHHHHHhC---CCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccc
Q 001197 731 --------KSGHRVLLFSQMTRLMDILEIYLKLN---DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLG 799 (1125)
Q Consensus 731 --------~~g~KVLIFsq~t~~ldiLe~~L~~~---gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~G 799 (1125)
..+||+|||||+.+|+|++++-|-.. .+.|.|+||++++.+|++++.+||++ ..+.|+|++|.+||+|
T Consensus 1330 ~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~D-ptIDvLlLTThVGGLG 1408 (1549)
T KOG0392|consen 1330 SEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNED-PTIDVLLLTTHVGGLG 1408 (1549)
T ss_pred ccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCC-CceeEEEEeeeccccc
Confidence 25799999999999999999888543 67799999999999999999999994 4588999999999999
Q ss_pred cCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHhhHHHHHHhcCc
Q 001197 800 LNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGL 870 (1125)
Q Consensus 800 LNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~r~~~Kl~l~~~VI~~g~ 870 (1125)
|||++|||||+++.||||..++||+||||||||++.|.||||||.||+||+|+..++.|+++++.||.+..
T Consensus 1409 LNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqN 1479 (1549)
T KOG0392|consen 1409 LNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQN 1479 (1549)
T ss_pred cccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997643
No 10
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=6.7e-73 Score=680.90 Aligned_cols=463 Identities=35% Similarity=0.522 Sum_probs=389.5
Q ss_pred CCccHHHHHHHHHHHHhhc------cCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCC----CEEEEcCcccHHHHHHH
Q 001197 406 GELRAYQLEGLQWMLSLFN------NNLNGILADEMGLGKTIQTIALIAYLLENKGVTG----PHVIVAPKAVLPNWINE 475 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~------~~~~GILADEMGLGKTiqaIali~~L~e~~~~~g----p~LIVvP~sll~qW~~E 475 (1125)
..|||||.+|+.||+.... +..|+|+||+||+|||+|+|++|+.++...+.++ ..|||||.+++.||.+|
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkkE 316 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKKE 316 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHHH
Confidence 5899999999999998642 4567899999999999999999999998877632 34999999999999999
Q ss_pred HHhhCC--CceEEEEcCChhHHHHHHHHHH---hhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHH
Q 001197 476 FSTWAP--SIAAVVYDGRPDERKAMREEFF---SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALA 550 (1125)
Q Consensus 476 f~k~~p--~~~vivy~G~~~~R~~l~~~~~---~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~Skls 550 (1125)
|.+|.. .+..+.+.|...+.-.....+. ...-..-|++.+|+++..+...+....+++||+||||++||..+.+.
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s~~~ 396 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDSLTL 396 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhhHHH
Confidence 999985 4666666666554111111111 11123469999999999999999999999999999999999999999
Q ss_pred HHHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHH--HHHHHHHhhhhh
Q 001197 551 KTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQL--LIIRRLHHVIRP 628 (1125)
Q Consensus 551 kaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~--~~i~rL~~vL~p 628 (1125)
++|..+.+++|++|||||+||++.|++++|+|+.|+++++...|...|..+.........+.++.. .-+..|..+...
T Consensus 397 kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~ 476 (776)
T KOG0390|consen 397 KALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNK 476 (776)
T ss_pred HHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998877665444444332 337779999999
Q ss_pred hhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCccccc------
Q 001197 629 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVG------ 702 (1125)
Q Consensus 629 flLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~------ 702 (1125)
|++||+-....++||++.+++|.|.+++.|..+|..+.+.. ... .. ..........|.++||||.|...
T Consensus 477 fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~-~~---~~~~l~~~~~L~k~cnhP~L~~~~~~~~~ 551 (776)
T KOG0390|consen 477 FILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMR-TL---KGYALELITKLKKLCNHPSLLLLCEKTEK 551 (776)
T ss_pred heeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhh-hh---hcchhhHHHHHHHHhcCHHhhcccccccc
Confidence 99999999999999999999999999999999999998753 110 00 01133455679999999999851
Q ss_pred ccchhhHHH------------HHhhcchHHHHHHHhHHhhh-CCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCH
Q 001197 703 EYNMWRKEE------------IIRASGKFELLDRLLPKLRK-SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKT 769 (1125)
Q Consensus 703 ~~~~~~~~~------------li~~S~Kle~L~~lL~kl~~-~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~ 769 (1125)
+........ -..-|+|+..|+.+|...++ ...++++.++++.++|+++..+.++|+.+++|||+|+.
T Consensus 552 e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~ 631 (776)
T KOG0390|consen 552 EKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSI 631 (776)
T ss_pred cccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCch
Confidence 000000011 12248899999999866554 34677777888999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHH
Q 001197 770 EERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEE 849 (1125)
Q Consensus 770 ~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE 849 (1125)
.+|+.+++.||++.++.||||+|++|||+||||.+|++||+||++|||+++.||++||+|.||+++|+||||++.||+||
T Consensus 632 ~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEE 711 (776)
T KOG0390|consen 632 KQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEE 711 (776)
T ss_pred HHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHhcCcCCC
Q 001197 850 VILERAKQKMGIDAKVIQAGLFNT 873 (1125)
Q Consensus 850 ~Il~r~~~Kl~l~~~VI~~g~~~~ 873 (1125)
+||+|+..|..|...|++......
T Consensus 712 k~~qrq~~K~~lS~~v~~~~~~~~ 735 (776)
T KOG0390|consen 712 KIYQRQTHKEGLSSMVFDEEEDVE 735 (776)
T ss_pred HHHHHHHHhhhhhheEEecccccc
Confidence 999999999999999987765433
No 11
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=2.3e-72 Score=657.88 Aligned_cols=512 Identities=29% Similarity=0.460 Sum_probs=422.2
Q ss_pred CCccHHHHHHHHHHHHh---------hccCCCeEEEcCCCchHHHHHHHHHHHHHH-ccCCCCCEEEEcCcccHHHHHHH
Q 001197 406 GELRAYQLEGLQWMLSL---------FNNNLNGILADEMGLGKTIQTIALIAYLLE-NKGVTGPHVIVAPKAVLPNWINE 475 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l---------~~~~~~GILADEMGLGKTiqaIali~~L~e-~~~~~gp~LIVvP~sll~qW~~E 475 (1125)
..|+|||..||+||+.. -..+.|||||+-||||||+|+|+|+..++. .+-....+|||||.+++.||.+|
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~E 746 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNE 746 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHH
Confidence 48999999999999964 245788999999999999999999987553 44456689999999999999999
Q ss_pred HHhhCCCce----EEEE----cCChhHHHHHHHHHHhhcCCccEEEecHHHHHHh---------------HHhhhccCee
Q 001197 476 FSTWAPSIA----AVVY----DGRPDERKAMREEFFSERGRFNVLITHYDLIMRD---------------RQYLKKVQWI 532 (1125)
Q Consensus 476 f~k~~p~~~----vivy----~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd---------------~~~L~ki~w~ 532 (1125)
|.+|.+++. +-|| ...+..|..+...|+... .|+|+-|++++.. ...|....++
T Consensus 747 FekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~g---gVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD 823 (1567)
T KOG1015|consen 747 FEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDG---GVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPD 823 (1567)
T ss_pred HHHhcccccccccceeehhhhccChHHHHHHHHHHHhcC---CEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCC
Confidence 999998622 2222 234566777777787653 6999999998642 1234456899
Q ss_pred EEEEcCCcccCChhhHHHHHHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCCh
Q 001197 533 YMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTD 612 (1125)
Q Consensus 533 ~VIIDEAHriKN~~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ 612 (1125)
+||+||||-|||..+.+++++..+.+.+||+|||||+||||.|+|.+++|+.|+++++...|.+.|.+|+.++.....+.
T Consensus 824 ~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq~~dST~ 903 (1567)
T KOG1015|consen 824 FVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQCADSTM 903 (1567)
T ss_pred eEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCccCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888777
Q ss_pred HHHHHHHHH---HHhhhhhhhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccc---cCCCccchHHHH
Q 001197 613 EEQLLIIRR---LHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD---TGTGKSKSLQNL 686 (1125)
Q Consensus 613 ee~~~~i~r---L~~vL~pflLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~---~~~~k~~~l~n~ 686 (1125)
.+-..+-.| |+.+|..|+.|+--..+..+||||.+++|.+.||+.|..+|+.++++....-. .+.+....|+.-
T Consensus 904 ~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~G~d~eg~~g~~arlf~d 983 (1567)
T KOG1015|consen 904 VDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGVGNDSEGGRGAGARLFQD 983 (1567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhccccCCccccccchhhhHHHH
Confidence 765554444 78899999999999999999999999999999999999999999985432222 122344556665
Q ss_pred HHHHHHhhCCCccccc--------------c---cc-h-h---------------------------------hH-----
Q 001197 687 SMQLRKCCNHPYLFVG--------------E---YN-M-W---------------------------------RK----- 709 (1125)
Q Consensus 687 ~~qLRkicnhP~L~~~--------------~---~~-~-~---------------------------------~~----- 709 (1125)
..-|++|.+|||...- + +. . . ..
T Consensus 984 fqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~ 1063 (1567)
T KOG1015|consen 984 FQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVI 1063 (1567)
T ss_pred HHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccccccccccccccccccCCchhhh
Confidence 5669999999987520 0 00 0 0 00
Q ss_pred -------------------------------------------------------HHHHhhcchHHHHHHHhHHhhhCCC
Q 001197 710 -------------------------------------------------------EEIIRASGKFELLDRLLPKLRKSGH 734 (1125)
Q Consensus 710 -------------------------------------------------------~~li~~S~Kle~L~~lL~kl~~~g~ 734 (1125)
...+..|+|+-+|.+||....+-|.
T Consensus 1064 k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGD 1143 (1567)
T KOG1015|consen 1064 KVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGD 1143 (1567)
T ss_pred hhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcc
Confidence 0012348999999999999999999
Q ss_pred EEEEEeccchHHHHHHHHHHh----------------------CCCeEEEecCCCCHHHHHHHHHHHcCCCC-CceEEEe
Q 001197 735 RVLLFSQMTRLMDILEIYLKL----------------------NDFKFLRLDGSTKTEERGTLLKQFNAPDS-PYFMFLL 791 (1125)
Q Consensus 735 KVLIFsq~t~~ldiLe~~L~~----------------------~gi~~~rLdGsts~~eR~~~I~~Fn~~ds-~~~VfLL 791 (1125)
|+|||||+...||+|++||.. .|..|.||||++...+|+++.+.||++.+ ..++|||
T Consensus 1144 KlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LI 1223 (1567)
T KOG1015|consen 1144 KLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLI 1223 (1567)
T ss_pred eeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEE
Confidence 999999999999999999963 36789999999999999999999999865 4678999
Q ss_pred eccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHhhHHHHHHhcCcC
Q 001197 792 STRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLF 871 (1125)
Q Consensus 792 STrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~r~~~Kl~l~~~VI~~g~~ 871 (1125)
||+||++||||-+|++|||||..|||..+.|+|-|++|.||+|+|+|||||+.||+|++||.|+-.|..++..|++.-..
T Consensus 1224 STRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv 1303 (1567)
T KOG1015|consen 1224 STRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQV 1303 (1567)
T ss_pred eeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987666
Q ss_pred CCCCCHHHHHHHHHHHHHhcccC-------CCCCCCCHHHHHHHHhcCHHHHHHHHHhhH
Q 001197 872 NTTSTAQDRREMLKEIMRRGTSS-------LGTDVPSEREINRLAARSDEEFWLFEKMDE 924 (1125)
Q Consensus 872 ~~~s~~~d~~e~L~~il~~~~~~-------~~~~~~~~~~in~l~~r~~~e~~~f~~~d~ 924 (1125)
....+..+ |-+|+.+..+- .....|.+..+.+++.-..+-++-|.+.|.
T Consensus 1304 ~Rhy~~ne----LteLy~fep~~ddp~sEr~~~~lpKdrllae~l~~~q~~i~~y~ehdS 1359 (1567)
T KOG1015|consen 1304 ERHYTMNE----LTELYTFEPDLDDPNSERDTPMLPKDRLLAELLQIHQEHIVGYHEHDS 1359 (1567)
T ss_pred HHHhhHhh----hHHHhhcCCccCCcccccccccCCchhHHHHHHHHHHHHhhhhhhhhh
Confidence 55555544 44566665321 122345677777877777776666665554
No 12
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-72 Score=627.28 Aligned_cols=460 Identities=30% Similarity=0.458 Sum_probs=377.4
Q ss_pred ccCCCccCCCCccHHHHHHHHHHHHhhc-cCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHH
Q 001197 397 TEQPTLLQGGELRAYQLEGLQWMLSLFN-NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINE 475 (1125)
Q Consensus 397 ~~qP~~l~g~~LrpYQ~egv~wml~l~~-~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~E 475 (1125)
.+||..+. ..|.|||++|+.|+.+... .-.|||||||||+|||||||+++.. .....|+|||||...+.||.+|
T Consensus 175 aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e~~ra~tLVvaP~VAlmQW~nE 249 (791)
T KOG1002|consen 175 AEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----EVDRAPTLVVAPTVALMQWKNE 249 (791)
T ss_pred ccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----ccccCCeeEEccHHHHHHHHHH
Confidence 56787775 6899999999999998765 5678999999999999999999865 2335689999999999999999
Q ss_pred HHhhCC-CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHh-----------------HHhhhccCeeEEEEc
Q 001197 476 FSTWAP-SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD-----------------RQYLKKVQWIYMIVD 537 (1125)
Q Consensus 476 f~k~~p-~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd-----------------~~~L~ki~w~~VIID 537 (1125)
+.++.. +.++++|+|.+..... ..+ ..||||+|||..+-.. .+.|..++|.+||+|
T Consensus 250 I~~~T~gslkv~~YhG~~R~~ni--kel----~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlD 323 (791)
T KOG1002|consen 250 IERHTSGSLKVYIYHGAKRDKNI--KEL----MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILD 323 (791)
T ss_pred HHHhccCceEEEEEecccccCCH--HHh----hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehh
Confidence 999985 5889999997644321 122 5799999999887432 456888999999999
Q ss_pred CCcccCChhhHHHHHHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCCh--------------------------
Q 001197 538 EGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSV-------------------------- 591 (1125)
Q Consensus 538 EAHriKN~~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~-------------------------- 591 (1125)
|||.||+..|..++++..+.+.+||+|||||+||++.|||+|++||...+|.-+
T Consensus 324 EAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~ 403 (791)
T KOG1002|consen 324 EAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHN 403 (791)
T ss_pred hhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccch
Confidence 999999999999999999999999999999999999999999999988876311
Q ss_pred -HHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHHHHhhh--CCCCeEEEEEecCCHHHHHHHHHHHhh
Q 001197 592 -ENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKY--LPGKSQVILKCDMSAWQKVYYQQVTDV 668 (1125)
Q Consensus 592 -~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~dV~~~--LP~k~e~vi~~~ms~~Q~~lY~~i~~~ 668 (1125)
-.-..||+......-.+...+..........|.+|..+|+||+|-+-.++ |||.+..+..--++..+..+|+.+...
T Consensus 404 ~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~d 483 (791)
T KOG1002|consen 404 IMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKD 483 (791)
T ss_pred hhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHh
Confidence 00011222211111111111222345566889999999999999876554 899999999999999999999998876
Q ss_pred cccccccCC------CccchHHHHHHHHHHhhCCCccccccc----c-----------------hh--------------
Q 001197 669 GRVGLDTGT------GKSKSLQNLSMQLRKCCNHPYLFVGEY----N-----------------MW-------------- 707 (1125)
Q Consensus 669 ~~~~l~~~~------~k~~~l~n~~~qLRkicnhP~L~~~~~----~-----------------~~-------------- 707 (1125)
....++... .....+..++.+||+..+||+|..... . ++
T Consensus 484 SkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi 563 (791)
T KOG1002|consen 484 SKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCI 563 (791)
T ss_pred hHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHH
Confidence 554443222 223456667889999999999974200 0 00
Q ss_pred ---------------------------------------hH--------HHHHhhcchHHHHHHHhHHhhhCC--CEEEE
Q 001197 708 ---------------------------------------RK--------EEIIRASGKFELLDRLLPKLRKSG--HRVLL 738 (1125)
Q Consensus 708 ---------------------------------------~~--------~~li~~S~Kle~L~~lL~kl~~~g--~KVLI 738 (1125)
.. -.-|.+|.|+++|.+-|..+++.. -|.||
T Consensus 564 ~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIV 643 (791)
T KOG1002|consen 564 KEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIV 643 (791)
T ss_pred HHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhh
Confidence 00 001567999999999999988654 47899
Q ss_pred EeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChh
Q 001197 739 FSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQ 818 (1125)
Q Consensus 739 Fsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~ 818 (1125)
|||||+|+|+|+..|...|+..+.+.|+|++..|...|+.|.+ +.+|.|||+|.+|||+.|||+.|+.|+++||||||+
T Consensus 644 FSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~n-d~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpa 722 (791)
T KOG1002|consen 644 FSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKN-DIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPA 722 (791)
T ss_pred HHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhcc-CCCeEEEEEEeccCceEeeechhceeEeecccccHH
Confidence 9999999999999999999999999999999999999999988 677999999999999999999999999999999999
Q ss_pred hHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHhhHHHHHHhc
Q 001197 819 MDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 868 (1125)
Q Consensus 819 ~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~r~~~Kl~l~~~VI~~ 868 (1125)
+..||++|+|||||.++|+|.|||.++|||++|++.+++|.++.+..|+.
T Consensus 723 Ve~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~q 772 (791)
T KOG1002|consen 723 VEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQ 772 (791)
T ss_pred HHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCC
Confidence 99999999999999999999999999999999999999999998887754
No 13
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=4.1e-69 Score=684.78 Aligned_cols=470 Identities=44% Similarity=0.708 Sum_probs=410.8
Q ss_pred ccCCC-ccCCCCccHHHHHHHHHHH-HhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCC-CCCEEEEcCcccHHHHH
Q 001197 397 TEQPT-LLQGGELRAYQLEGLQWML-SLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVAPKAVLPNWI 473 (1125)
Q Consensus 397 ~~qP~-~l~g~~LrpYQ~egv~wml-~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~-~gp~LIVvP~sll~qW~ 473 (1125)
...|. ....++|+|||.+|++|+. .++..+.+|||||+||+|||+|+|+++.++...... .+|+|||||.+++.||.
T Consensus 327 ~~~~~~~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~ 406 (866)
T COG0553 327 LNAPEPVDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWK 406 (866)
T ss_pred hccCchhhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHH
Confidence 33443 3445799999999999999 889999999999999999999999999987766555 68999999999999999
Q ss_pred HHHHhhCCCce-EEEEcCChhH----HHHHHHHHHhh-cCCccEEEecHHHHHH---hHHhhhccCeeEEEEcCCcccCC
Q 001197 474 NEFSTWAPSIA-AVVYDGRPDE----RKAMREEFFSE-RGRFNVLITHYDLIMR---DRQYLKKVQWIYMIVDEGHRLKN 544 (1125)
Q Consensus 474 ~Ef~k~~p~~~-vivy~G~~~~----R~~l~~~~~~~-~~~fdVvITTYe~l~k---d~~~L~ki~w~~VIIDEAHriKN 544 (1125)
.||.+|.|.++ +.+++|.... +..+....... ...|+|++|||+.+.+ +...+..+.|+++|+||||+|||
T Consensus 407 ~e~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn 486 (866)
T COG0553 407 REFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKN 486 (866)
T ss_pred HHHhhhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhh
Confidence 99999999999 9999998763 43333322110 0138999999999999 99999999999999999999999
Q ss_pred hhhHHHHHHHccccceEEEeecCCCCCChHHHHHHhh-ccCCCCCC-ChHHHHHHhcccccccCcccCChHHHHHHHHHH
Q 001197 545 HECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLN-FLLPTIFN-SVENFEEWFNAPFKDRGQVALTDEEQLLIIRRL 622 (1125)
Q Consensus 545 ~~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~-fL~P~~f~-s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL 622 (1125)
..+..+++++.+++.++++|||||++|++.|||++++ |+.|.+++ +...|..||..+......... .+.....+.+|
T Consensus 487 ~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~l 565 (866)
T COG0553 487 DQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP-LEARELGIELL 565 (866)
T ss_pred hhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc-hhhHHHHHHHH
Confidence 9999999999999999999999999999999999999 99999999 568999999998776543322 23344566679
Q ss_pred HhhhhhhhhhhhHHH--HhhhCCCCeEEEEEecCCHHHHHHHHHHHh---hccccccc---CCC-------ccchHHHHH
Q 001197 623 HHVIRPFILRRKKDE--VEKYLPGKSQVILKCDMSAWQKVYYQQVTD---VGRVGLDT---GTG-------KSKSLQNLS 687 (1125)
Q Consensus 623 ~~vL~pflLRR~K~d--V~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~---~~~~~l~~---~~~-------k~~~l~n~~ 687 (1125)
+.+++||++||+|.+ +...||++.+.++.|.++..|..+|..... .....+.. ... ....+.+.+
T Consensus 566 ~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 645 (866)
T COG0553 566 RKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALL 645 (866)
T ss_pred HHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Confidence 999999999999999 899999999999999999999999999887 33332221 111 145677888
Q ss_pred HHHHHhhCCCcccccc-cchh---------------hHHHHHhhc-chHHHHHHHh-HHhhhCCC--EEEEEeccchHHH
Q 001197 688 MQLRKCCNHPYLFVGE-YNMW---------------RKEEIIRAS-GKFELLDRLL-PKLRKSGH--RVLLFSQMTRLMD 747 (1125)
Q Consensus 688 ~qLRkicnhP~L~~~~-~~~~---------------~~~~li~~S-~Kle~L~~lL-~kl~~~g~--KVLIFsq~t~~ld 747 (1125)
++||++|+||.++... .... ....++..| +|+..+.+++ ..+...|+ +||||+||+.+++
T Consensus 646 ~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~ 725 (866)
T COG0553 646 TRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLD 725 (866)
T ss_pred HHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHH
Confidence 9999999999999875 2111 122456777 9999999999 89999999 9999999999999
Q ss_pred HHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhh
Q 001197 748 ILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRA 827 (1125)
Q Consensus 748 iLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRa 827 (1125)
+|+.+|...++.|+++||+++...|..+++.|+++ ...+||++|++|||+||||++|++||+||+||||+.+.||++|+
T Consensus 726 il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa 804 (866)
T COG0553 726 LLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRA 804 (866)
T ss_pred HHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHH
Confidence 99999999999999999999999999999999997 56889999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEEEEEeCCCHHHHHHHHHHHHhhHHHHHHhc
Q 001197 828 HRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 868 (1125)
Q Consensus 828 hRIGQkk~V~VyrLIt~~TIEE~Il~r~~~Kl~l~~~VI~~ 868 (1125)
|||||+++|.||+|++.+|+||+|+.++..|+.+...++++
T Consensus 805 ~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~ 845 (866)
T COG0553 805 HRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA 845 (866)
T ss_pred HHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999986
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.3e-67 Score=609.45 Aligned_cols=478 Identities=28% Similarity=0.463 Sum_probs=394.2
Q ss_pred HHhhhhhhhhh--cccccCCCccCCCCccHHHHHHHHHHHHhhcc-CCCeEEEcCCCchHHHHHHHHHHHHHHc------
Q 001197 383 RQYNSAIHSIE--EKVTEQPTLLQGGELRAYQLEGLQWMLSLFNN-NLNGILADEMGLGKTIQTIALIAYLLEN------ 453 (1125)
Q Consensus 383 ~~y~~~~h~i~--e~v~~qP~~l~g~~LrpYQ~egv~wml~l~~~-~~~GILADEMGLGKTiqaIali~~L~e~------ 453 (1125)
.+.....|++. +.+++.|..+. ..|.|||+.|+.||+....+ +.||||||+||+|||+++|++|.+-...
T Consensus 300 ~ql~~~~e~~P~et~lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~ 378 (901)
T KOG4439|consen 300 QQLADATETIPGETDLTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREK 378 (901)
T ss_pred HHHHHHhhcCCCcccccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcc
Confidence 33444555554 34566676664 79999999999999987654 6788999999999999999999765432
Q ss_pred -cCCCCCEEEEcCcccHHHHHHHHHhhCC--CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHH---------
Q 001197 454 -KGVTGPHVIVAPKAVLPNWINEFSTWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMR--------- 521 (1125)
Q Consensus 454 -~~~~gp~LIVvP~sll~qW~~Ef~k~~p--~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~k--------- 521 (1125)
+....++|||||.|++.||..|+.+-.. .+.|++|||+.. | .+.... ...||||||||..+.+
T Consensus 379 ~~~~a~~TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~-r-~i~~~~---L~~YDvViTTY~lva~~~~~e~~~~ 453 (901)
T KOG4439|consen 379 KGESASKTLIICPASLIHQWEAEVARRLEQNALSVYLYHGPNK-R-EISAKE---LRKYDVVITTYNLVANKPDDELEEG 453 (901)
T ss_pred cccccCCeEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCCcc-c-cCCHHH---HhhcceEEEeeeccccCCchhhhcc
Confidence 1223379999999999999999998763 488999999874 2 221111 1689999999999876
Q ss_pred -hHHhhhccCeeEEEEcCCcccCChhhHHHHHHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcc
Q 001197 522 -DRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNA 600 (1125)
Q Consensus 522 -d~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~ 600 (1125)
+...|..+.|.+||+||||.|+|+.++.+.+++.+.+.+||+|||||+||++.|+|+|+.||...+|++...|.+++..
T Consensus 454 ~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~ 533 (901)
T KOG4439|consen 454 KNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDN 533 (901)
T ss_pred cCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccC
Confidence 2356888999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHHHHhh-----hCCCCeEEEEEecCCHHHHHHHHHHHhhccccccc
Q 001197 601 PFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEK-----YLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT 675 (1125)
Q Consensus 601 p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~dV~~-----~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~ 675 (1125)
+-..+ -.||.=+.++.||||||..... .||.+...++.+.|+..+...|+-+.+..+..+..
T Consensus 534 ~s~~g-------------~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq 600 (901)
T KOG4439|consen 534 MSKGG-------------ANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQ 600 (901)
T ss_pred ccccc-------------hhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHH
Confidence 53322 3567778899999999998877 79999999999999999999998776543221100
Q ss_pred ------------C----------------------------C--CccchHHHHHHHHHHhhCCCcccccccchhh-----
Q 001197 676 ------------G----------------------------T--GKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR----- 708 (1125)
Q Consensus 676 ------------~----------------------------~--~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~----- 708 (1125)
+ . .....+..++++||++|+||-+.....++..
T Consensus 601 ~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g 680 (901)
T KOG4439|consen 601 FLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNG 680 (901)
T ss_pred HHHhhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcC
Confidence 0 0 0012245677899999999966533111100
Q ss_pred -------------------------------------HH---HHHhhcchHHHHHHHhHHh-hhCCCEEEEEeccchHHH
Q 001197 709 -------------------------------------KE---EIIRASGKFELLDRLLPKL-RKSGHRVLLFSQMTRLMD 747 (1125)
Q Consensus 709 -------------------------------------~~---~li~~S~Kle~L~~lL~kl-~~~g~KVLIFsq~t~~ld 747 (1125)
.. +..+.|.|+..+..++..+ ....+|++|.|||+.+|+
T Consensus 681 ~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLn 760 (901)
T KOG4439|consen 681 GDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLN 760 (901)
T ss_pred cchhhhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHH
Confidence 00 0134688999999988887 677899999999999999
Q ss_pred HHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhh
Q 001197 748 ILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRA 827 (1125)
Q Consensus 748 iLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRa 827 (1125)
+++..|...|+.|..++|.+...+|+.+++.||.......|+|||..|||+||||.+|+++|++|..|||+-+.||.+|+
T Consensus 761 iv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRI 840 (901)
T KOG4439|consen 761 IVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRI 840 (901)
T ss_pred HHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEEEEEeCCCHHHHHHHHHHHHhhHHHHHHhcCcC--CCCCCHHH
Q 001197 828 HRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLF--NTTSTAQD 879 (1125)
Q Consensus 828 hRIGQkk~V~VyrLIt~~TIEE~Il~r~~~Kl~l~~~VI~~g~~--~~~s~~~d 879 (1125)
+|+||+|+|.||||++.||||++|...+..|++++..|+.+..- .+..+..+
T Consensus 841 YR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~ad 894 (901)
T KOG4439|consen 841 YRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLAD 894 (901)
T ss_pred HHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHH
Confidence 99999999999999999999999999999999999999874432 33444444
No 15
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=4.5e-61 Score=553.98 Aligned_cols=479 Identities=29% Similarity=0.500 Sum_probs=391.0
Q ss_pred CCccHHHHHHHHHHHHh-------h--ccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHH
Q 001197 406 GELRAYQLEGLQWMLSL-------F--NNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 476 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l-------~--~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef 476 (1125)
.-++|||+-||+||+.. | ..+.|||||+-||||||+|+|+++..++.+.. .+.+|+|+|-.++.||-.||
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~-AKtVL~ivPiNTlQNWlsEf 331 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTK-AKTVLVIVPINTLQNWLSEF 331 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCc-cceEEEEEehHHHHHHHHHh
Confidence 37999999999999853 2 34789999999999999999999998888754 45899999999999999999
Q ss_pred HhhCCC-----------ceEEEEcC---ChhHHHHHHHHHHhhcCCccEEEecHHHHHHh--------------------
Q 001197 477 STWAPS-----------IAAVVYDG---RPDERKAMREEFFSERGRFNVLITHYDLIMRD-------------------- 522 (1125)
Q Consensus 477 ~k~~p~-----------~~vivy~G---~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd-------------------- 522 (1125)
..|.|. +.|.+... +-..|..+...|... -.|+++.|++++-.
T Consensus 332 nmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~---GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~ 408 (1387)
T KOG1016|consen 332 NMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQT---GGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISS 408 (1387)
T ss_pred hhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhcc---CCEEEehHHHHHHHHHhcccccCCccccccccCC
Confidence 999975 23444332 234566666777654 34999999997421
Q ss_pred ------------------HHhhhccCeeEEEEcCCcccCChhhHHHHHHHccccceEEEeecCCCCCChHHHHHHhhccC
Q 001197 523 ------------------RQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLL 584 (1125)
Q Consensus 523 ------------------~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~ 584 (1125)
...|-+-..|+||+||+|+|||..+.++.+|+.+.+++|+.|||-|+|||+-|+|.+++|+.
T Consensus 409 ~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVR 488 (1387)
T KOG1016|consen 409 GFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVR 488 (1387)
T ss_pred cccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheecc
Confidence 12244568899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHhcccccccCcccCChHHHHHHHHH---HHhhhhhhhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHH
Q 001197 585 PTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRR---LHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVY 661 (1125)
Q Consensus 585 P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~r---L~~vL~pflLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~l 661 (1125)
|+++++...|...|..|+.++..+..+..+..++..| ||.+|..|+.||+-..+...||.+.+++|.+.+|..|+.+
T Consensus 489 P~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR~L 568 (1387)
T KOG1016|consen 489 PKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQRQL 568 (1387)
T ss_pred ccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHHHH
Confidence 9999999999999999999999999998887776655 8899999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccc------------------------------------
Q 001197 662 YQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYN------------------------------------ 705 (1125)
Q Consensus 662 Y~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~------------------------------------ 705 (1125)
|..+.......................-..|+.|||-+......
T Consensus 569 Y~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~~s~ 648 (1387)
T KOG1016|consen 569 YRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSNPST 648 (1387)
T ss_pred HHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCCCCCCCCC
Confidence 99987433322221111111222233346778899876532100
Q ss_pred ------------------------------------hhh-------HHHHHhhcchHHHHHHHhHHhhhCCCEEEEEecc
Q 001197 706 ------------------------------------MWR-------KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQM 742 (1125)
Q Consensus 706 ------------------------------------~~~-------~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~ 742 (1125)
.|. .+.++..++|+..+.+++..-...|.++|||||.
T Consensus 649 ~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~kil~fSq~ 728 (1387)
T KOG1016|consen 649 PLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEKILIFSQN 728 (1387)
T ss_pred cccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCceEEEeecc
Confidence 000 0001223455555555666666778999999999
Q ss_pred chHHHHHHHHHHhC------------------CCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCC
Q 001197 743 TRLMDILEIYLKLN------------------DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 804 (1125)
Q Consensus 743 t~~ldiLe~~L~~~------------------gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~ 804 (1125)
...||.|+.+|..+ +..|+++||+++..+|+++|++||.+.+-.+.|||||+||..||||-+
T Consensus 729 l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIs 808 (1387)
T KOG1016|consen 729 LTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLIS 808 (1387)
T ss_pred hhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeec
Confidence 99999999999753 356999999999999999999999987766799999999999999999
Q ss_pred CCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHhhHHHHHHhcCcCCCCCCHHHHHHHH
Q 001197 805 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREML 884 (1125)
Q Consensus 805 Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~r~~~Kl~l~~~VI~~g~~~~~s~~~d~~e~L 884 (1125)
|+.+|+||..|||..+.||++|++|.||+|+|.|||||+.+|+|.+||.|+..|+++...|++.-.-+...+..+ +
T Consensus 809 anr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np~an~s~Ke----~ 884 (1387)
T KOG1016|consen 809 ANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANPDANISQKE----L 884 (1387)
T ss_pred cceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCccccccHHH----H
Confidence 999999999999999999999999999999999999999999999999999999999999999877666666544 5
Q ss_pred HHHHHhcc
Q 001197 885 KEIMRRGT 892 (1125)
Q Consensus 885 ~~il~~~~ 892 (1125)
+.|+...+
T Consensus 885 enLl~~~e 892 (1387)
T KOG1016|consen 885 ENLLMYDE 892 (1387)
T ss_pred HHHhhhhh
Confidence 55555443
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-55 Score=493.80 Aligned_cols=417 Identities=27% Similarity=0.383 Sum_probs=326.4
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceE-
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAA- 485 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~v- 485 (1125)
.|.|||.+||.+.+. .++..|||||||||||+|||+++.|+... +|+|||||.++...|..++.+|+|.+..
T Consensus 198 ~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyraE----wplliVcPAsvrftWa~al~r~lps~~pi 270 (689)
T KOG1000|consen 198 RLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRAE----WPLLIVCPASVRFTWAKALNRFLPSIHPI 270 (689)
T ss_pred hhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhhc----CcEEEEecHHHhHHHHHHHHHhcccccce
Confidence 799999999998886 56667999999999999999999988775 5999999999999999999999998654
Q ss_pred -EEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHcc--ccceEE
Q 001197 486 -VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY--QIQRRL 562 (1125)
Q Consensus 486 -ivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l--~s~~RL 562 (1125)
++..+.. .-..+ .....|.|+||+.+......|..-+|.+||+||+|++|+..++..+++..+ ...+.|
T Consensus 271 ~vv~~~~D-~~~~~-------~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvI 342 (689)
T KOG1000|consen 271 FVVDKSSD-PLPDV-------CTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVI 342 (689)
T ss_pred EEEecccC-Ccccc-------ccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheE
Confidence 3333322 11100 022459999999999999999999999999999999999999998888655 678999
Q ss_pred EeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhh-hhhhhhhHHHHhhh
Q 001197 563 LLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIR-PFILRRKKDEVEKY 641 (1125)
Q Consensus 563 lLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~-pflLRR~K~dV~~~ 641 (1125)
+|||||--.++.|||.++..+++.+|.++.+|...|+..-.-....++... .....|+-+|. -.|+||+|.+|..+
T Consensus 343 LLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~---tnl~EL~~lL~k~lMIRRlK~dvL~q 419 (689)
T KOG1000|consen 343 LLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGC---TNLEELAALLFKRLMIRRLKADVLKQ 419 (689)
T ss_pred EecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCC---CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999888764322211111110 01334555553 45899999999999
Q ss_pred CCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhcchHHH
Q 001197 642 LPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFEL 721 (1125)
Q Consensus 642 LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S~Kle~ 721 (1125)
||+|...++.+ ...-+......+........ + .+ .|+-.+.|.- ++ +. ...-.|+..
T Consensus 420 LPpKrr~Vv~~-~~gr~da~~~~lv~~a~~~t-----~----~~-~~e~~~~~l~--l~------y~----~tgiaK~~a 476 (689)
T KOG1000|consen 420 LPPKRREVVYV-SGGRIDARMDDLVKAAADYT-----K----VN-SMERKHESLL--LF------YS----LTGIAKAAA 476 (689)
T ss_pred CCccceEEEEE-cCCccchHHHHHHHHhhhcc-----h----hh-hhhhhhHHHH--HH------HH----HhcccccHH
Confidence 99996555543 23333333333322221100 0 00 0111111110 00 00 012345555
Q ss_pred HHHHhHH----hhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccc
Q 001197 722 LDRLLPK----LRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 797 (1125)
Q Consensus 722 L~~lL~k----l~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG 797 (1125)
+.+.|-. ..+.+.|+|||++++.+||-|+.++..+++.++||||+|++.+|..+++.|+. ++.+.|-+||..|+|
T Consensus 477 v~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~-seev~VAvlsItA~g 555 (689)
T KOG1000|consen 477 VCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQT-SEEVRVAVLSITAAG 555 (689)
T ss_pred HHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhcc-ccceEEEEEEEeecc
Confidence 5555554 45678999999999999999999999999999999999999999999999998 456899999999999
Q ss_pred cccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHhhHHHHH
Q 001197 798 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKV 865 (1125)
Q Consensus 798 ~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~r~~~Kl~l~~~V 865 (1125)
+||+|++|+.||+.+.+|||...+||.||+|||||+..|.||+||+++|+|+.+|..+.+|++....+
T Consensus 556 vGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~ 623 (689)
T KOG1000|consen 556 VGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSV 623 (689)
T ss_pred cceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999887665
No 17
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.1e-54 Score=541.13 Aligned_cols=430 Identities=21% Similarity=0.260 Sum_probs=325.1
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceE
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAA 485 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~v 485 (1125)
..|.|||+.++.+++..+ ..+.|||||||||||++|++++.+++.. +..+|+|||||.+++.||..|+.+|| ++.+
T Consensus 151 ~~l~pHQl~~~~~vl~~~--~~R~LLADEvGLGKTIeAglil~~l~~~-g~~~rvLIVvP~sL~~QW~~El~~kF-~l~~ 226 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRH--APRVLLADEVGLGKTIEAGMIIHQQLLT-GRAERVLILVPETLQHQWLVEMLRRF-NLRF 226 (956)
T ss_pred CCCCHHHHHHHHHHhhcc--CCCEEEEeCCcCcHHHHHHHHHHHHHHc-CCCCcEEEEcCHHHHHHHHHHHHHHh-CCCe
Confidence 479999999998876644 4567999999999999999999888765 45579999999999999999999887 4556
Q ss_pred EEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH---HhhhccCeeEEEEcCCcccCCh---hhHHHHHHHcc--c
Q 001197 486 VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR---QYLKKVQWIYMIVDEGHRLKNH---ECALAKTISGY--Q 557 (1125)
Q Consensus 486 ivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~---~~L~ki~w~~VIIDEAHriKN~---~SklskaL~~l--~ 557 (1125)
.++.+....... ..-.+....++++|+||+++.++. ..+....|++|||||||+++|. .|+.++.+..+ .
T Consensus 227 ~i~~~~~~~~~~--~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~ 304 (956)
T PRK04914 227 SLFDEERYAEAQ--HDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEV 304 (956)
T ss_pred EEEcCcchhhhc--ccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhc
Confidence 666654321100 000012235789999999998754 4566779999999999999953 45667777666 5
Q ss_pred cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcc--cc-------cccCcccCChHH--------------
Q 001197 558 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNA--PF-------KDRGQVALTDEE-------------- 614 (1125)
Q Consensus 558 s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~--p~-------~~~~~~~~~~ee-------------- 614 (1125)
+.++|+|||||+||+..|+|++|+||+|+.|++...|...... ++ ..... ++...
T Consensus 305 ~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~--~~~~~~~~l~~ll~~~~~~ 382 (956)
T PRK04914 305 IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEK--LSDDALNALGELLGEQDIE 382 (956)
T ss_pred cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCc--CCHHHHHHHHHHhcccchh
Confidence 7899999999999999999999999999999999999765432 11 01110 01100
Q ss_pred ----------------HHHHHHHHHh--hhhhhhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccC
Q 001197 615 ----------------QLLIIRRLHH--VIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTG 676 (1125)
Q Consensus 615 ----------------~~~~i~rL~~--vL~pflLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~ 676 (1125)
....+..|.. -...+|+|+++.+|.. +|++....+.+++++.-...+... .
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~-fp~R~~~~~~l~~~~~y~~~~~~~---~------- 451 (956)
T PRK04914 383 PLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKG-FPKRELHPIPLPLPEQYQTAIKVS---L------- 451 (956)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcC-CCcCceeEeecCCCHHHHHHHHHh---H-------
Confidence 0111111111 1237789999999875 899999999999876432222110 0
Q ss_pred CCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHH-Hh
Q 001197 677 TGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL-KL 755 (1125)
Q Consensus 677 ~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L-~~ 755 (1125)
...++. +.+|.-....+. .....+..++|++.|.++|..+. ++||||||++..+++.|...| ..
T Consensus 452 ----------~~~~~~-~l~pe~~~~~~~--~~~~~~~~d~Ki~~L~~~L~~~~--~~KvLVF~~~~~t~~~L~~~L~~~ 516 (956)
T PRK04914 452 ----------EARARD-MLYPEQIYQEFE--DNATWWNFDPRVEWLIDFLKSHR--SEKVLVICAKAATALQLEQALRER 516 (956)
T ss_pred ----------HHHHHh-hcCHHHHHHHHh--hhhhccccCHHHHHHHHHHHhcC--CCeEEEEeCcHHHHHHHHHHHhhc
Confidence 001111 222211110000 01112345689999999998753 789999999999999999999 56
Q ss_pred CCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCc
Q 001197 756 NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 835 (1125)
Q Consensus 756 ~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~ 835 (1125)
.|++++.++|+++..+|..+++.|++++..+. +||||.+||+|+|++.|++||+||+||||..++||+||+||+||++.
T Consensus 517 ~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~-VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~ 595 (956)
T PRK04914 517 EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQ-VLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHD 595 (956)
T ss_pred cCeeEEEEECCCCHHHHHHHHHHHhcCCCCcc-EEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCce
Confidence 79999999999999999999999998654444 57889999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCHHHHHHHHHHHHhhHHHHHHhcCc
Q 001197 836 VRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGL 870 (1125)
Q Consensus 836 V~VyrLIt~~TIEE~Il~r~~~Kl~l~~~VI~~g~ 870 (1125)
|.||.+++++|+++.|+.....|+++.+.++..|.
T Consensus 596 V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~ 630 (956)
T PRK04914 596 IQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGR 630 (956)
T ss_pred EEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHH
Confidence 99999999999999999999999999887765543
No 18
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=8e-56 Score=529.58 Aligned_cols=389 Identities=45% Similarity=0.727 Sum_probs=355.4
Q ss_pred ccCCCccC--CCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHH
Q 001197 397 TEQPTLLQ--GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 474 (1125)
Q Consensus 397 ~~qP~~l~--g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~ 474 (1125)
..||..+. ++.|.+||.+|++|+...+..+..+|||||||+|||++++.++..++......+|+||++|.+++.+|..
T Consensus 283 ~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~ 362 (696)
T KOG0383|consen 283 EDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWER 362 (696)
T ss_pred ccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCC
Confidence 45777765 5899999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred HHHhhCCCceEEEEcCChhHHHHHHHHHH------------------hhcCCccEEEecHHHHHHhHHhhhccCeeEEEE
Q 001197 475 EFSTWAPSIAAVVYDGRPDERKAMREEFF------------------SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIV 536 (1125)
Q Consensus 475 Ef~k~~p~~~vivy~G~~~~R~~l~~~~~------------------~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VII 536 (1125)
|+..|+|...++.|.|+.+.|..++...+ .....|+|.+++|+++..+...+..+.|.++|+
T Consensus 363 e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~liv 442 (696)
T KOG0383|consen 363 EFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIV 442 (696)
T ss_pred chhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEe
Confidence 99999999999999999998877654211 112568999999999999999999999999999
Q ss_pred cCCcccCChhhHHHHHHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHH
Q 001197 537 DEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQL 616 (1125)
Q Consensus 537 DEAHriKN~~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~ 616 (1125)
||+|+++|..++++..+..++..++++|||||+||++.||+++|+|+.|..|++...|.+.|...+ ..
T Consensus 443 de~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~------------~~ 510 (696)
T KOG0383|consen 443 DEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDIS------------CE 510 (696)
T ss_pred echhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhh------------HH
Confidence 999999999999999999999999999999999999999999999999999999998888776432 23
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCC
Q 001197 617 LIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNH 696 (1125)
Q Consensus 617 ~~i~rL~~vL~pflLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnh 696 (1125)
..+..||.++.|+|+||+|.||.+..|.|.+.++.+.|++.|+.+|+.+...+-..+.. .+...++.|++|+|+|+|||
T Consensus 511 ~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-~~~~~s~~n~~mel~K~~~h 589 (696)
T KOG0383|consen 511 EQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-GVHQYSLLNIVMELRKQCNH 589 (696)
T ss_pred HHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-cchhHHHHHHHHHHHHhhcC
Confidence 45889999999999999999999999999999999999999999999999877666655 44567889999999999999
Q ss_pred Ccccccccc-----hhhHHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHH
Q 001197 697 PYLFVGEYN-----MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEE 771 (1125)
Q Consensus 697 P~L~~~~~~-----~~~~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~e 771 (1125)
||++..... .+....++.+|+|+.+|..++++++..||||+||+||+.++|+|++++...+ .|.|+||..+..+
T Consensus 590 py~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~ 668 (696)
T KOG0383|consen 590 PYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPE 668 (696)
T ss_pred cccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchh
Confidence 999987221 2335678899999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHcCCCCCceEEEeeccccccc
Q 001197 772 RGTLLKQFNAPDSPYFMFLLSTRAGGLG 799 (1125)
Q Consensus 772 R~~~I~~Fn~~ds~~~VfLLSTrAGG~G 799 (1125)
|+.+|+.||.+++.-||||+||+|||+|
T Consensus 669 rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 669 RQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hhhhccccCCCCccceEEEeecccccCC
Confidence 9999999999999999999999999998
No 19
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3e-52 Score=505.64 Aligned_cols=438 Identities=29% Similarity=0.463 Sum_probs=357.2
Q ss_pred HHHHHHHHHHHHh-hccCCCeEEEcCCCchHHHHHHHHHHHHHHccC------CCCCEEEEcCcccHHHHHHHHHhhCC-
Q 001197 410 AYQLEGLQWMLSL-FNNNLNGILADEMGLGKTIQTIALIAYLLENKG------VTGPHVIVAPKAVLPNWINEFSTWAP- 481 (1125)
Q Consensus 410 pYQ~egv~wml~l-~~~~~~GILADEMGLGKTiqaIali~~L~e~~~------~~gp~LIVvP~sll~qW~~Ef~k~~p- 481 (1125)
.+|..+..|+... ...-.|||+||+||+|||+++|+++........ ..+.+|||||.+++.||..|+.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 4444444444333 233468899999999999999999876544333 45678999999999999999966553
Q ss_pred -CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHccccce
Q 001197 482 -SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQR 560 (1125)
Q Consensus 482 -~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l~s~~ 560 (1125)
.+.+.+|+| |.... .....++||||||.++.. ..+..+.|.+||+||||.++|.+++.++++..+.+.+
T Consensus 215 ~~l~v~v~~g----r~kd~----~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~ 284 (674)
T KOG1001|consen 215 DKLSIYVYHG----RTKDK----SELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKY 284 (674)
T ss_pred cceEEEEecc----ccccc----chhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhheeeccce
Confidence 477888998 21111 112678999999999976 5577799999999999999999999999999999999
Q ss_pred EEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHHHHh-
Q 001197 561 RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVE- 639 (1125)
Q Consensus 561 RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~dV~- 639 (1125)
||+|||||+||++.|||+++.|+.-.++.....|...+..|+..+.. .....++..+|.++++||+|..-.
T Consensus 285 RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~--------~~~~k~l~~~L~~v~lrrtK~~~~~ 356 (674)
T KOG1001|consen 285 RWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY--------KEGVKTLQGILKKVMLRRTKEMEVD 356 (674)
T ss_pred eeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH--------HHHHHHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999999999999999888888765421 345788999999999999997332
Q ss_pred ----hhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCC------CccchHHHHHHHHHHhhCCCcccccccchh--
Q 001197 640 ----KYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT------GKSKSLQNLSMQLRKCCNHPYLFVGEYNMW-- 707 (1125)
Q Consensus 640 ----~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~------~k~~~l~n~~~qLRkicnhP~L~~~~~~~~-- 707 (1125)
..|||+...++.+.++..++.+|+.+............ .....+...+.+||++|+||+++.......
T Consensus 357 gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~ 436 (674)
T KOG1001|consen 357 GKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGD 436 (674)
T ss_pred CccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhcccc
Confidence 36999999999999999999999998876654443221 122345556678999999999875321000
Q ss_pred -------hH--------------------------------------------------------HHHHh----------
Q 001197 708 -------RK--------------------------------------------------------EEIIR---------- 714 (1125)
Q Consensus 708 -------~~--------------------------------------------------------~~li~---------- 714 (1125)
.. ..++.
T Consensus 437 ~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~ 516 (674)
T KOG1001|consen 437 SGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIIND 516 (674)
T ss_pred ccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhh
Confidence 00 00011
Q ss_pred ---hcchHHHHHHHhHHhhhCCC-EEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEE
Q 001197 715 ---ASGKFELLDRLLPKLRKSGH-RVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 790 (1125)
Q Consensus 715 ---~S~Kle~L~~lL~kl~~~g~-KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfL 790 (1125)
.|.|+..+.++|.....+.. ++|||||++.++++++..|...++.+.+++|.++...|...+..|+. +..+.|++
T Consensus 517 ~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~-~~~~~vll 595 (674)
T KOG1001|consen 517 LLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPC-DPLVTALL 595 (674)
T ss_pred ccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhccccc-CccHHHHH
Confidence 15566667777765444444 99999999999999999999999999999999999999999999994 66688999
Q ss_pred eeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHhhHHHHHH
Q 001197 791 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVI 866 (1125)
Q Consensus 791 LSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~r~~~Kl~l~~~VI 866 (1125)
+|.+|||.||||+.|++||++||+|||..+.||++|||||||+++|.|+||+..+|+||+|+..+++|+.+...+.
T Consensus 596 ~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~ 671 (674)
T KOG1001|consen 596 MSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAF 671 (674)
T ss_pred HHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999877654
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=2.7e-43 Score=393.58 Aligned_cols=277 Identities=39% Similarity=0.701 Sum_probs=229.8
Q ss_pred HHHHHHHHHHHhh---------ccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCC--CCEEEEcCcccHHHHHHHHHhh
Q 001197 411 YQLEGLQWMLSLF---------NNNLNGILADEMGLGKTIQTIALIAYLLENKGVT--GPHVIVAPKAVLPNWINEFSTW 479 (1125)
Q Consensus 411 YQ~egv~wml~l~---------~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~--gp~LIVvP~sll~qW~~Ef~k~ 479 (1125)
||+.||.||+..+ ....|||||||||+|||+++++++.++....... +++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 7788899999999999999999999888765544 3699999999999999999999
Q ss_pred C-C-CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHH-----HhHHhhhccCeeEEEEcCCcccCChhhHHHHH
Q 001197 480 A-P-SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIM-----RDRQYLKKVQWIYMIVDEGHRLKNHECALAKT 552 (1125)
Q Consensus 480 ~-p-~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~-----kd~~~L~ki~w~~VIIDEAHriKN~~Sklska 552 (1125)
+ | ...+++|.|....+.. .......++|+|+||+.+. .....+..++|++|||||+|+++|..+..+++
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~ 156 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRL----SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKA 156 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHT----TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHH
T ss_pred cccccccccccccccccccc----cccccccceeeeccccccccccccccccccccccceeEEEeccccccccccccccc
Confidence 9 4 6899999988722222 1222367899999999999 66777888999999999999999999999999
Q ss_pred HHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhh
Q 001197 553 ISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 632 (1125)
Q Consensus 553 L~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLR 632 (1125)
+..+.+.++|+|||||++|++.|+|++++||.|..+.+...|.++|..+ ..........+|..++.+|++|
T Consensus 157 l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~---------~~~~~~~~~~~L~~~l~~~~~r 227 (299)
T PF00176_consen 157 LRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP---------DKENSYENIERLRELLSEFMIR 227 (299)
T ss_dssp HHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH---------HHTHHHHHHHHHHHHHCCCEEC
T ss_pred ccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh---------ccccccccccccccccchhhhh
Confidence 9999999999999999999999999999999999999999999998665 1223455678999999999999
Q ss_pred hhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCC----CccchHHHHHHHHHHhhCCCccc
Q 001197 633 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT----GKSKSLQNLSMQLRKCCNHPYLF 700 (1125)
Q Consensus 633 R~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~----~k~~~l~n~~~qLRkicnhP~L~ 700 (1125)
|++.++...+|+..+.++.|+||+.|+.+|+.+.......+.... .....+...+++||++|+||+|.
T Consensus 228 ~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 228 RTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp HCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred hhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 999999888999999999999999999999998877766554433 33456778889999999999874
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.9e-39 Score=392.46 Aligned_cols=382 Identities=20% Similarity=0.338 Sum_probs=273.2
Q ss_pred CCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcc-cHHHHHHHHHhhC--C
Q 001197 405 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA-VLPNWINEFSTWA--P 481 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~s-ll~qW~~Ef~k~~--p 481 (1125)
..+|||||.+++.++... ....+|||+++||+|||++++++++.+ .+++|||||.+ ++.||..+|.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~~~-gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHHhc-CCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 478999999999988641 112579999999999999999888754 35899999985 4899999999997 3
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHh----------HHhhhccCeeEEEEcCCcccCChhhHHHH
Q 001197 482 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD----------RQYLKKVQWIYMIVDEGHRLKNHECALAK 551 (1125)
Q Consensus 482 ~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd----------~~~L~ki~w~~VIIDEAHriKN~~Sklsk 551 (1125)
...+..|.|...... .+..+|+|+||+++... ...|....|++||+||||++.+. ...+
T Consensus 326 ~~~I~~~tg~~k~~~---------~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~--~fr~ 394 (732)
T TIGR00603 326 DSQICRFTSDAKERF---------HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA--MFRR 394 (732)
T ss_pred CceEEEEecCccccc---------ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH--HHHH
Confidence 456667777543211 03467999999998642 23455568999999999999643 4555
Q ss_pred HHHccccceEEEeecCCCCCChHHHHHHhhcc-CCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhh
Q 001197 552 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFL-LPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 630 (1125)
Q Consensus 552 aL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL-~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pfl 630 (1125)
.+..+.+.+||+|||||++++ +.+..+.|+ .|.+|.-
T Consensus 395 il~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~---------------------------------------- 432 (732)
T TIGR00603 395 VLTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA---------------------------------------- 432 (732)
T ss_pred HHHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeeec----------------------------------------
Confidence 667888999999999999876 334444443 3433221
Q ss_pred hhhhHHHHh--hhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhh
Q 001197 631 LRRKKDEVE--KYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 708 (1125)
Q Consensus 631 LRR~K~dV~--~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~ 708 (1125)
...++. ..|.+.....++|+|++.....|.... . ... ..| +
T Consensus 433 ---~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~--~---------~~k------~~l--~--------------- 475 (732)
T TIGR00603 433 ---NWMELQKKGFIANVQCAEVWCPMTPEFYREYLREN--S---------RKR------MLL--Y--------------- 475 (732)
T ss_pred ---CHHHHHhCCccccceEEEEEecCCHHHHHHHHHhc--c---------hhh------hHH--h---------------
Confidence 111111 246666777899999987544442111 0 000 000 0
Q ss_pred HHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceE
Q 001197 709 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 788 (1125)
Q Consensus 709 ~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~V 788 (1125)
..+..|+..+..++......|+++||||+++..++.+...| +. ..++|.|+..+|..++++|+.++. +.
T Consensus 476 ----~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~-i~- 544 (732)
T TIGR00603 476 ----VMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHNPK-VN- 544 (732)
T ss_pred ----hhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhCCC-cc-
Confidence 12346889998888876678999999999998888887766 33 458999999999999999986422 33
Q ss_pred EEeeccccccccCCCCCCEEEEeCCCC-ChhhHHHHHhhhcccCCCCc-----EEEEEEEeCCCHHHHHHHHHHH---Hh
Q 001197 789 FLLSTRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKKE-----VRVFVLVSVGSIEEVILERAKQ---KM 859 (1125)
Q Consensus 789 fLLSTrAGG~GLNLq~Ad~VIi~D~~W-NP~~d~QAigRahRIGQkk~-----V~VyrLIt~~TIEE~Il~r~~~---Kl 859 (1125)
+|++|++|++||||+.|++||++++++ |+.++.||+||+.|.+..+. ..+|.||+.+|.|+....+-++ .+
T Consensus 545 vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~q 624 (732)
T TIGR00603 545 TIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQ 624 (732)
T ss_pred EEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHC
Confidence 466779999999999999999999986 99999999999999997653 7999999999999887544322 12
Q ss_pred hHHHHHHh-c-CcC----CCCCCHHHHHHHHHHHHHhcccC
Q 001197 860 GIDAKVIQ-A-GLF----NTTSTAQDRREMLKEIMRRGTSS 894 (1125)
Q Consensus 860 ~l~~~VI~-~-g~~----~~~s~~~d~~e~L~~il~~~~~~ 894 (1125)
+..-+||. . |.. -.-++..++.++|+.+|......
T Consensus 625 GY~~~vi~~~~~~~~~~~l~~~~~~~~~~ll~~~l~~~~~~ 665 (732)
T TIGR00603 625 GYSFKVITHLPGMDNESNLAYSSKEEQLELLQKVLLAGDLD 665 (732)
T ss_pred CCeeEEEecCcccccccccccCCHHHHHHHHHHHHhCcccc
Confidence 22223321 1 111 12456667778888887655433
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.2e-34 Score=366.30 Aligned_cols=432 Identities=20% Similarity=0.220 Sum_probs=284.3
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCC--
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS-- 482 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~-- 482 (1125)
.++|+||.+.+..++. .++|++++||+|||++++.++..++. ...+++|||||+ .++.||..+|.+++..
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 4899999999987764 38999999999999999988887764 345789999999 7889999999988643
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH--HhhhccCeeEEEEcCCcccCChhhHHHHHH---Hccc
Q 001197 483 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKNHECALAKTI---SGYQ 557 (1125)
Q Consensus 483 ~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~--~~L~ki~w~~VIIDEAHriKN~~SklskaL---~~l~ 557 (1125)
..+.++.|...... +...+ ...+|+|+|++.+..+. ..+....|++|||||||++.+..+..+.+- ....
T Consensus 87 ~~v~~~~g~~~~~~--r~~~~---~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~ 161 (773)
T PRK13766 87 EKIVVFTGEVSPEK--RAELW---EKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAK 161 (773)
T ss_pred ceEEEEeCCCCHHH--HHHHH---hCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCC
Confidence 47777877544322 11222 45789999999998764 233445799999999999986544322221 2224
Q ss_pred cceEEEeecCCCCCChHHHHHHhhccCCCCCCChH----HHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 001197 558 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVE----NFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 633 (1125)
Q Consensus 558 s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~----~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR 633 (1125)
..++++|||||.++ ...+..+++-|....+.... .+...+..+......+.+++. +..++..|.+++.++
T Consensus 162 ~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~-----~~~i~~~l~~~~~~~ 235 (773)
T PRK13766 162 NPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEE-----LKEIRDLLNEALKDR 235 (773)
T ss_pred CCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHH-----HHHHHHHHHHHHHHH
Confidence 56799999999876 45666666655433222111 122222221111111223322 456777788888777
Q ss_pred hHHHHhhh-CCCCeEEEEEecCCHHHHHHHHHHHhhccccccc-----------------CCCccchHHHHHHHHHHhhC
Q 001197 634 KKDEVEKY-LPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-----------------GTGKSKSLQNLSMQLRKCCN 695 (1125)
Q Consensus 634 ~K~dV~~~-LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~-----------------~~~k~~~l~n~~~qLRkicn 695 (1125)
.+...... .++....+....+...+..++..+.......... .......+..++..++..+.
T Consensus 236 l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~ 315 (773)
T PRK13766 236 LKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEAR 315 (773)
T ss_pred HHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhcc
Confidence 76644322 2222222222333334444443332210000000 00000111111222221111
Q ss_pred CCccccccc---ch------h-hHHHHHhhcchHHHHHHHhHHhh--hCCCEEEEEeccchHHHHHHHHHHhCCCeEEEe
Q 001197 696 HPYLFVGEY---NM------W-RKEEIIRASGKFELLDRLLPKLR--KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRL 763 (1125)
Q Consensus 696 hP~L~~~~~---~~------~-~~~~li~~S~Kle~L~~lL~kl~--~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rL 763 (1125)
++....... .. + ....+...++|+..|.++|.... ..+.|+||||++..+++.|.++|...|+.+..+
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~ 395 (773)
T PRK13766 316 SSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRF 395 (773)
T ss_pred ccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEE
Confidence 110000000 00 0 01111234789999999998876 578999999999999999999999999999999
Q ss_pred cCC--------CCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCc
Q 001197 764 DGS--------TKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 835 (1125)
Q Consensus 764 dGs--------ts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~ 835 (1125)
+|. ++..+|..++++|+.+... +|++|.++++|+|++.|++||+||++|||..++|+.||++|.|+
T Consensus 396 ~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~---vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~--- 469 (773)
T PRK13766 396 VGQASKDGDKGMSQKEQIEILDKFRAGEFN---VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE--- 469 (773)
T ss_pred EccccccccCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---
Confidence 997 8889999999999987654 68899999999999999999999999999999998888888765
Q ss_pred EEEEEEEeCCCHHHHHHHHHHHHhhH
Q 001197 836 VRVFVLVSVGSIEEVILERAKQKMGI 861 (1125)
Q Consensus 836 V~VyrLIt~~TIEE~Il~r~~~Kl~l 861 (1125)
+.||.|++.+|+||.++.....|...
T Consensus 470 ~~v~~l~~~~t~ee~~y~~~~~ke~~ 495 (773)
T PRK13766 470 GRVVVLIAKGTRDEAYYWSSRRKEKK 495 (773)
T ss_pred CEEEEEEeCCChHHHHHHHhhHHHHH
Confidence 67999999999999998776655444
No 23
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=3.9e-34 Score=349.82 Aligned_cols=261 Identities=25% Similarity=0.382 Sum_probs=200.7
Q ss_pred ccCCCeEEEcCCCchHHHHHHHHHHHHHH---------------ccCCCCCEEEEcCcccHHHHHHHHHhhCCCc-eEEE
Q 001197 424 NNNLNGILADEMGLGKTIQTIALIAYLLE---------------NKGVTGPHVIVAPKAVLPNWINEFSTWAPSI-AAVV 487 (1125)
Q Consensus 424 ~~~~~GILADEMGLGKTiqaIali~~L~e---------------~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~-~viv 487 (1125)
..+..+++|||||+|||+..+++...... .....|.+|||||.+++.||-.|+.+++++. ++..
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEE
Confidence 34455799999999999998887643211 1122578999999999999999999999876 9999
Q ss_pred EcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHH----------------------hhhccCeeEEEEcCCcccCCh
Q 001197 488 YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ----------------------YLKKVQWIYMIVDEGHRLKNH 545 (1125)
Q Consensus 488 y~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~----------------------~L~ki~w~~VIIDEAHriKN~ 545 (1125)
|.|-...-..-. .....+|||||||+.+..+.. .|..+.|.+||+|||+.+...
T Consensus 452 Y~Girk~~~~~~----~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess 527 (1394)
T KOG0298|consen 452 YFGIRKTFWLSP----FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS 527 (1394)
T ss_pred EechhhhcccCc----hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch
Confidence 998533211111 112679999999999987532 255678999999999999999
Q ss_pred hhHHHHHHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhh
Q 001197 546 ECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 625 (1125)
Q Consensus 546 ~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~v 625 (1125)
.|..++.+..+++.++|+.||||+|+ +.+|+.||+||.-.+|+....|.+.+..++... .....++.+
T Consensus 528 sS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r-----------a~~~~~~dl 595 (1394)
T KOG0298|consen 528 SSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR-----------AKCEPLLDL 595 (1394)
T ss_pred HHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH-----------hhhhhHHHH
Confidence 99999999999999999999999999 999999999999999999999999887765543 123457888
Q ss_pred hhhhhhhhhHHHHhhh--CCCCeEEEEEecCCHHHHHHHHHHHhh----c--------ccccccCC-------CccchHH
Q 001197 626 IRPFILRRKKDEVEKY--LPGKSQVILKCDMSAWQKVYYQQVTDV----G--------RVGLDTGT-------GKSKSLQ 684 (1125)
Q Consensus 626 L~pflLRR~K~dV~~~--LP~k~e~vi~~~ms~~Q~~lY~~i~~~----~--------~~~l~~~~-------~k~~~l~ 684 (1125)
+...+.|+.|..|+.. +||..+.+....+++.+..+|...... . +..+...+ .....+.
T Consensus 596 ~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~ 675 (1394)
T KOG0298|consen 596 FKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIIL 675 (1394)
T ss_pred HHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHH
Confidence 8899999999999875 799888888888888887777643211 1 01111111 1124567
Q ss_pred HHHHHHHHhhCCCccc
Q 001197 685 NLSMQLRKCCNHPYLF 700 (1125)
Q Consensus 685 n~~~qLRkicnhP~L~ 700 (1125)
+.+.+||++|+||.+.
T Consensus 676 ~~l~rLRq~Cchplv~ 691 (1394)
T KOG0298|consen 676 KWLLRLRQACCHPLVG 691 (1394)
T ss_pred HHHHHHHHhhcccccc
Confidence 7788999999999765
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=7.2e-29 Score=283.45 Aligned_cols=426 Identities=20% Similarity=0.214 Sum_probs=277.3
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhC--CC
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA--PS 482 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~--p~ 482 (1125)
.+.|.||+..+.-.+. .|.+++.++|||||++|+.++++.+... .|.+|+++|+ .|+.|-..-|.+.+ |.
T Consensus 14 ie~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~--~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 14 IEPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWF--GGKVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhc--CCeEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 4889999998887765 4899999999999999999998766654 3479999998 88999888888886 55
Q ss_pred ceEEEEcCC--hhHHHHHHHHHHhhcCCccEEEecHHHHHHhHH--hhhccCeeEEEEcCCcccCChhh--HHHHHHHcc
Q 001197 483 IAAVVYDGR--PDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHEC--ALAKTISGY 556 (1125)
Q Consensus 483 ~~vivy~G~--~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~--~L~ki~w~~VIIDEAHriKN~~S--klskaL~~l 556 (1125)
-.++.+.|. +..|.... .+-.|++.|++++.+|.. .+..-++.++|+|||||.-+..+ -.++.....
T Consensus 87 ~~i~~ltGev~p~~R~~~w-------~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~ 159 (542)
T COG1111 87 DEIAALTGEVRPEEREELW-------AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS 159 (542)
T ss_pred hheeeecCCCChHHHHHHH-------hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHh
Confidence 778888885 44454332 456799999999999853 34555789999999999865433 233333333
Q ss_pred -ccceEEEeecCCCCCChHHHHHHhhccCCCCCC----ChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhh
Q 001197 557 -QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFN----SVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 631 (1125)
Q Consensus 557 -~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~----s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflL 631 (1125)
...+.++||||| -++...+-..++-|..+-.. .......+....--.--.+.+ .++...+...|..+|+|.+-
T Consensus 160 ~k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~l-p~e~~~ir~~l~~~l~~~Lk 237 (542)
T COG1111 160 AKNPLILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDL-PEEIKEIRDLLRDALKPRLK 237 (542)
T ss_pred ccCceEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccC-cHHHHHHHHHHHHHHHHHHH
Confidence 344789999999 45566666666655332211 111111111110000012222 23445566667777766441
Q ss_pred hhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCC------------------------ccchHHHHH
Q 001197 632 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTG------------------------KSKSLQNLS 687 (1125)
Q Consensus 632 RR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~------------------------k~~~l~n~~ 687 (1125)
.+++ .-.....++ -.++.+................. ....+.+.+
T Consensus 238 -~L~~--------~g~~~~~~~--~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl 306 (542)
T COG1111 238 -PLKE--------LGVIESSSP--VSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYL 306 (542)
T ss_pred -HHHH--------cCceeccCc--ccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 1111 111111111 11222222220000000000000 001112222
Q ss_pred HHHHHhhCC------------CcccccccchhhHHHHHhhcchHHHHHHHhHHhh--hCCCEEEEEeccchHHHHHHHHH
Q 001197 688 MQLRKCCNH------------PYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLR--KSGHRVLLFSQMTRLMDILEIYL 753 (1125)
Q Consensus 688 ~qLRkicnh------------P~L~~~~~~~~~~~~li~~S~Kle~L~~lL~kl~--~~g~KVLIFsq~t~~ldiLe~~L 753 (1125)
.+|..-|.. |+...............-..||++.+.+++.... ..+.|||||++++.+.+.|.++|
T Consensus 307 ~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L 386 (542)
T COG1111 307 EKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFL 386 (542)
T ss_pred HHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHH
Confidence 222222221 1111000000000111224689999999999876 56789999999999999999999
Q ss_pred HhCCCeEE-EecC--------CCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHH
Q 001197 754 KLNDFKFL-RLDG--------STKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAE 824 (1125)
Q Consensus 754 ~~~gi~~~-rLdG--------sts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAi 824 (1125)
...|.... ++-| +|++.+..++|++|..|..+ +|+||..|.+||+++.+|.||+|||.-+|...+||.
T Consensus 387 ~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n---VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~ 463 (542)
T COG1111 387 KKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN---VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRK 463 (542)
T ss_pred HhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce---EEEEcccccccCCCCcccEEEEecCCcHHHHHHHhh
Confidence 98888775 6655 59999999999999998866 699999999999999999999999999999999999
Q ss_pred hhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHhhHHHH
Q 001197 825 DRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAK 864 (1125)
Q Consensus 825 gRahRIGQkk~V~VyrLIt~~TIEE~Il~r~~~Kl~l~~~ 864 (1125)
||.+|. +.-+||-|+++||-||.-+....+|..-...
T Consensus 464 GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke~~m~e 500 (542)
T COG1111 464 GRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKEQKMIE 500 (542)
T ss_pred CccccC---CCCeEEEEEecCchHHHHHHHHHHHHHHHHH
Confidence 999984 7789999999999999999888887554433
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=3.4e-28 Score=292.92 Aligned_cols=337 Identities=18% Similarity=0.216 Sum_probs=233.6
Q ss_pred CCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhC--C
Q 001197 405 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA--P 481 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~--p 481 (1125)
.++|+|||.+++.-++. +.+||+..++|+|||+++++++.++.... .+++|||||+ .++.||..+|.+|. |
T Consensus 112 ~~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~~~--~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLENY--EGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 36899999999976664 56789999999999999877766655532 3489999999 88999999999976 3
Q ss_pred CceE-EEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHcc-ccc
Q 001197 482 SIAA-VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-QIQ 559 (1125)
Q Consensus 482 ~~~v-ivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l-~s~ 559 (1125)
...+ .++.|.... ...+|+|+||+.+.+....+ --.|++|||||||++... .+...+..+ ++.
T Consensus 186 ~~~~~~i~~g~~~~------------~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH~~~~~--~~~~il~~~~~~~ 250 (501)
T PHA02558 186 REAMHKIYSGTAKD------------TDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECHLFTGK--SLTSIITKLDNCK 250 (501)
T ss_pred ccceeEEecCcccC------------CCCCEEEeeHHHHhhchhhh-ccccCEEEEEchhcccch--hHHHHHHhhhccc
Confidence 3333 455554321 34689999999987644221 127899999999999753 345555666 578
Q ss_pred eEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHHHHh
Q 001197 560 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVE 639 (1125)
Q Consensus 560 ~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~dV~ 639 (1125)
++++|||||-..... .+.+..++.|-... . ...++.
T Consensus 251 ~~lGLTATp~~~~~~-~~~~~~~fG~i~~~-v------------------------------------------~~~~li 286 (501)
T PHA02558 251 FKFGLTGSLRDGKAN-ILQYVGLFGDIFKP-V------------------------------------------TTSQLM 286 (501)
T ss_pred eEEEEeccCCCcccc-HHHHHHhhCCceEE-e------------------------------------------cHHHHH
Confidence 899999999543221 11121111111000 0 000000
Q ss_pred --hhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhcc
Q 001197 640 --KYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 717 (1125)
Q Consensus 640 --~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S~ 717 (1125)
..+.+.....+.+..+......+ ....+.. .+. .+.....
T Consensus 287 ~~g~l~~~~~~~v~~~~~~~~~~~~----------------~~~~~~~---~~~-------------------~l~~~~~ 328 (501)
T PHA02558 287 EEGQVTDLKINSIFLRYPDEDRVKL----------------KGEDYQE---EIK-------------------YITSHTK 328 (501)
T ss_pred hCCCcCCceEEEEeccCCHHHhhhh----------------cccchHH---HHH-------------------HHhccHH
Confidence 11222223333444332211000 0000000 011 1112234
Q ss_pred hHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccc
Q 001197 718 KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 797 (1125)
Q Consensus 718 Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG 797 (1125)
+..++..++..+...++++||||..+..++.|.+.|...|+++..++|+++.++|..+++.|+.+. ..|+|.|++..|
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~--~~vLvaT~~~l~ 406 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGK--GIIIVASYGVFS 406 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCC--CeEEEEEcceec
Confidence 556677777777778899999999999999999999999999999999999999999999998754 345555669999
Q ss_pred cccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCc-EEEEEEEeCCC
Q 001197 798 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE-VRVFVLVSVGS 846 (1125)
Q Consensus 798 ~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~-V~VyrLIt~~T 846 (1125)
+|+|++.+|+||+++|+.+...++|++||++|.|..|+ |.||.|+-.-.
T Consensus 407 eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 407 TGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred cccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 99999999999999999999999999999999998765 99999996433
No 26
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=2.2e-28 Score=289.85 Aligned_cols=363 Identities=21% Similarity=0.244 Sum_probs=267.5
Q ss_pred CCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCC
Q 001197 404 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS 482 (1125)
Q Consensus 404 ~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~ 482 (1125)
...+|||||.+++.-++..+..+..||+..++|.|||+.++.++..+.. ++|||||. .++.||...+.+++..
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCC
Confidence 3468999999999888876655888999999999999999999877643 49999999 7799999888888754
Q ss_pred c-eEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH--HhhhccCeeEEEEcCCcccCChhhHHHHHHHccccc
Q 001197 483 I-AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ 559 (1125)
Q Consensus 483 ~-~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~--~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l~s~ 559 (1125)
. .+-.+.|....- ....|+|+||+++.+.. ..+..-+|++||+|||||+....... .+..+...
T Consensus 107 ~~~~g~~~~~~~~~-----------~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~--~~~~~~~~ 173 (442)
T COG1061 107 NDEIGIYGGGEKEL-----------EPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRR--ILELLSAA 173 (442)
T ss_pred ccccceecCceecc-----------CCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHH--HHHhhhcc
Confidence 4 455566643321 11469999999998863 34444489999999999997754332 33444455
Q ss_pred e-EEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHHH-
Q 001197 560 R-RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE- 637 (1125)
Q Consensus 560 ~-RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~d- 637 (1125)
+ +|+|||||.......+.-+..++.|- .......+
T Consensus 174 ~~~LGLTATp~R~D~~~~~~l~~~~g~~-------------------------------------------vy~~~~~~l 210 (442)
T COG1061 174 YPRLGLTATPEREDGGRIGDLFDLIGPI-------------------------------------------VYEVSLKEL 210 (442)
T ss_pred cceeeeccCceeecCCchhHHHHhcCCe-------------------------------------------EeecCHHHH
Confidence 5 99999999754433333333332221 22222222
Q ss_pred Hh-hhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhc
Q 001197 638 VE-KYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 716 (1125)
Q Consensus 638 V~-~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S 716 (1125)
+. ..|.|.....+++.++......|..........+..... ... ............
T Consensus 211 i~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~------~~~-----------------~~~~~~~~~~~~ 267 (442)
T COG1061 211 IDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT------LRA-----------------ENEARRIAIASE 267 (442)
T ss_pred HhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh------hhH-----------------HHHHHHHhhccH
Confidence 22 357888899999999998888887655432211111000 000 000111223345
Q ss_pred chHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecccc
Q 001197 717 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 796 (1125)
Q Consensus 717 ~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAG 796 (1125)
.|+..+..++.... .+.+++||+......+.|...|...|+ ...++|.++..+|..+++.|..++.. +|++++.+
T Consensus 268 ~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~---~lv~~~vl 342 (442)
T COG1061 268 RKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIK---VLVTVKVL 342 (442)
T ss_pred HHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCC---EEEEeeec
Confidence 67888888888766 789999999999999999999998888 99999999999999999999997744 79999999
Q ss_pred ccccCCCCCCEEEEeCCCCChhhHHHHHhhhcc-cCCCCc--EEEEEEEeCCCHHHHHHHHHH
Q 001197 797 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHR-IGQKKE--VRVFVLVSVGSIEEVILERAK 856 (1125)
Q Consensus 797 G~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahR-IGQkk~--V~VyrLIt~~TIEE~Il~r~~ 856 (1125)
.+|+|++.|+++|+..|.-++..+.|++||+.| ...+.. +..|-+++..+.+..+.....
T Consensus 343 ~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 343 DEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred cceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 999999999999999999999999999999999 444444 777888888888877765543
No 27
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=2.8e-25 Score=265.99 Aligned_cols=306 Identities=18% Similarity=0.227 Sum_probs=216.3
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCCce
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 484 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~~~ 484 (1125)
..++|+|.+++.-++. +.+.++..++|+|||+..+..+. . ..+.+|||+|+ +|+.+|...+.... +.
T Consensus 10 ~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l--~----~~~~~lVi~P~~~L~~dq~~~l~~~g--i~ 77 (470)
T TIGR00614 10 SSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPAL--C----SDGITLVISPLISLMEDQVLQLKASG--IP 77 (470)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHH--H----cCCcEEEEecHHHHHHHHHHHHHHcC--Cc
Confidence 4799999999988775 66899999999999987644332 1 24578999999 78888999998754 44
Q ss_pred EEEEcCChh--HHHHHHHHHHhhcCCccEEEecHHHHHHhH---Hhh-hccCeeEEEEcCCcccCChhh-------HHHH
Q 001197 485 AVVYDGRPD--ERKAMREEFFSERGRFNVLITHYDLIMRDR---QYL-KKVQWIYMIVDEGHRLKNHEC-------ALAK 551 (1125)
Q Consensus 485 vivy~G~~~--~R~~l~~~~~~~~~~fdVvITTYe~l~kd~---~~L-~ki~w~~VIIDEAHriKN~~S-------klsk 551 (1125)
+..+.+... .+..+..... .+.++++++|++.+.... ..+ ...++.+|||||||++..... .+..
T Consensus 78 ~~~l~~~~~~~~~~~i~~~~~--~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~ 155 (470)
T TIGR00614 78 ATFLNSSQSKEQQKNVLTDLK--DGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155 (470)
T ss_pred EEEEeCCCCHHHHHHHHHHHh--cCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH
Confidence 444444432 2333333332 267999999999986533 333 345788999999999865331 2222
Q ss_pred HHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhh
Q 001197 552 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 631 (1125)
Q Consensus 552 aL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflL 631 (1125)
....++....++|||||-.....++...+++-.|.++... |.
T Consensus 156 l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s------~~-------------------------------- 197 (470)
T TIGR00614 156 LKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS------FD-------------------------------- 197 (470)
T ss_pred HHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC------CC--------------------------------
Confidence 3345567789999999966555555555443333221100 00
Q ss_pred hhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHH
Q 001197 632 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEE 711 (1125)
Q Consensus 632 RR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~ 711 (1125)
.|.. ...+.-..
T Consensus 198 ----------r~nl-~~~v~~~~--------------------------------------------------------- 209 (470)
T TIGR00614 198 ----------RPNL-YYEVRRKT--------------------------------------------------------- 209 (470)
T ss_pred ----------CCCc-EEEEEeCC---------------------------------------------------------
Confidence 0000 00000000
Q ss_pred HHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEe
Q 001197 712 IIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 791 (1125)
Q Consensus 712 li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLL 791 (1125)
...+..+..++.+ ...+.++||||......+.+...|...|+.+..+||+++.++|..+++.|..+... +|+
T Consensus 210 ----~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~---vLV 281 (470)
T TIGR00614 210 ----PKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQ---VVV 281 (470)
T ss_pred ----ccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCc---EEE
Confidence 0011112222221 23567789999999999999999999999999999999999999999999987765 689
Q ss_pred eccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEE
Q 001197 792 STRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 839 (1125)
Q Consensus 792 STrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~Vy 839 (1125)
+|.+.|+|||++.+++||+||+|.++..|.|++||++|.|+...+.+|
T Consensus 282 aT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 282 ATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred EechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999999999999999999999999999988775554
No 28
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.94 E-value=2.3e-24 Score=257.43 Aligned_cols=315 Identities=18% Similarity=0.255 Sum_probs=218.5
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhC---CC
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---PS 482 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~---p~ 482 (1125)
++.|+|.+++..++. +.+.|+..++|+|||...+..+...+........+||+||+ .+..||..++..++ ++
T Consensus 26 ~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 26 EMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 689999999987774 77899999999999988765554444333223358999999 78899999988764 46
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHH--hhhccCeeEEEEcCCcccCChh--hHHHHHHHccc-
Q 001197 483 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHE--CALAKTISGYQ- 557 (1125)
Q Consensus 483 ~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~--~L~ki~w~~VIIDEAHriKN~~--SklskaL~~l~- 557 (1125)
+.+..+.|.......... + ....+|+|+|++.+..... .+.-..+.+|||||||++-+.. ..+...+..++
T Consensus 102 ~~v~~~~Gg~~~~~~~~~-l---~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~ 177 (460)
T PRK11776 102 IKVLTLCGGVPMGPQIDS-L---EHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPA 177 (460)
T ss_pred cEEEEEECCCChHHHHHH-h---cCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCc
Confidence 777777776544333221 1 1578999999999876532 1222367899999999986543 23444445553
Q ss_pred cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHHH
Q 001197 558 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 637 (1125)
Q Consensus 558 s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~d 637 (1125)
....+++|||+-. ++-.+...+ +..|.. +.- .
T Consensus 178 ~~q~ll~SAT~~~----~~~~l~~~~--------------~~~~~~---------------------------i~~---~ 209 (460)
T PRK11776 178 RRQTLLFSATYPE----GIAAISQRF--------------QRDPVE---------------------------VKV---E 209 (460)
T ss_pred ccEEEEEEecCcH----HHHHHHHHh--------------cCCCEE---------------------------EEE---C
Confidence 3467999999721 111111100 000000 000 0
Q ss_pred HhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhcc
Q 001197 638 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 717 (1125)
Q Consensus 638 V~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S~ 717 (1125)
.....+......+.+ ....
T Consensus 210 ~~~~~~~i~~~~~~~-------------------------------------------------------------~~~~ 228 (460)
T PRK11776 210 STHDLPAIEQRFYEV-------------------------------------------------------------SPDE 228 (460)
T ss_pred cCCCCCCeeEEEEEe-------------------------------------------------------------CcHH
Confidence 000000000000000 0112
Q ss_pred hHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccc
Q 001197 718 KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 797 (1125)
Q Consensus 718 Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG 797 (1125)
|+..|..++... .+.++||||+.....+.+...|...|+.+..++|+++..+|..+++.|.++... +|++|.+++
T Consensus 229 k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~---vLVaTdv~~ 303 (460)
T PRK11776 229 RLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCS---VLVATDVAA 303 (460)
T ss_pred HHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCc---EEEEecccc
Confidence 555666666432 456899999999999999999999999999999999999999999999987766 699999999
Q ss_pred cccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCC
Q 001197 798 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 845 (1125)
Q Consensus 798 ~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~ 845 (1125)
+|||++++++||+||.|.++..|.|++||++|.|+.- .+|.|++.+
T Consensus 304 rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 304 RGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred cccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 9999999999999999999999999999999999763 455566543
No 29
>PTZ00110 helicase; Provisional
Probab=99.93 E-value=3.2e-24 Score=260.74 Aligned_cols=319 Identities=21% Similarity=0.297 Sum_probs=216.7
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHH-HHHHHHcc---CCCC-CEEEEcCc-ccHHHHHHHHHhhC
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL-IAYLLENK---GVTG-PHVIVAPK-AVLPNWINEFSTWA 480 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIal-i~~L~e~~---~~~g-p~LIVvP~-sll~qW~~Ef~k~~ 480 (1125)
++.|+|..++..+++ +.+.|+..++|+|||++.+.. +..+.... ...+ .+|||||+ .|+.||..++.++.
T Consensus 152 ~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 152 EPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 799999999987775 778899999999999987543 34443321 1123 37899999 78889999999987
Q ss_pred CC--ceEE-EEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHH--hhhccCeeEEEEcCCcccCChh--hHHHHHH
Q 001197 481 PS--IAAV-VYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHE--CALAKTI 553 (1125)
Q Consensus 481 p~--~~vi-vy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~--~L~ki~w~~VIIDEAHriKN~~--SklskaL 553 (1125)
.. +.+. +|.|.... ..... +. ...+|+|+|++.+..... .+.-.+..+|||||||++.... ..+...+
T Consensus 228 ~~~~i~~~~~~gg~~~~-~q~~~-l~---~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il 302 (545)
T PTZ00110 228 ASSKIRNTVAYGGVPKR-GQIYA-LR---RGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIV 302 (545)
T ss_pred cccCccEEEEeCCCCHH-HHHHH-HH---cCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHH
Confidence 53 4444 45554432 22221 11 468999999998865432 1222357799999999987643 2344444
Q ss_pred Hcc-ccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhh
Q 001197 554 SGY-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 632 (1125)
Q Consensus 554 ~~l-~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLR 632 (1125)
..+ .....+++|||.- .++-.+... +..
T Consensus 303 ~~~~~~~q~l~~SAT~p----~~v~~l~~~---------------l~~-------------------------------- 331 (545)
T PTZ00110 303 SQIRPDRQTLMWSATWP----KEVQSLARD---------------LCK-------------------------------- 331 (545)
T ss_pred HhCCCCCeEEEEEeCCC----HHHHHHHHH---------------Hhc--------------------------------
Confidence 555 3456788999941 111111110 000
Q ss_pred hhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHH
Q 001197 633 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEI 712 (1125)
Q Consensus 633 R~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~l 712 (1125)
..| ..+.+... .+.. . .. +. +.+..
T Consensus 332 --------~~~----v~i~vg~~----------------~l~~-~---~~-------i~----q~~~~------------ 356 (545)
T PTZ00110 332 --------EEP----VHVNVGSL----------------DLTA-C---HN-------IK----QEVFV------------ 356 (545)
T ss_pred --------cCC----EEEEECCC----------------cccc-C---CC-------ee----EEEEE------------
Confidence 000 00000000 0000 0 00 00 00000
Q ss_pred HhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEee
Q 001197 713 IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 792 (1125)
Q Consensus 713 i~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLS 792 (1125)
+....|...|..++..+...+.++||||+....++.|...|...|+....++|.++..+|..+++.|+.+... +|++
T Consensus 357 ~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~---ILVa 433 (545)
T PTZ00110 357 VEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSP---IMIA 433 (545)
T ss_pred EechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCc---EEEE
Confidence 0112355566677777666788999999999999999999999999999999999999999999999997766 6999
Q ss_pred ccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCC
Q 001197 793 TRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 845 (1125)
Q Consensus 793 TrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~ 845 (1125)
|.++++|||++.+++||+||+|+++..|.|++||++|.|.+-. +|.|++.+
T Consensus 434 Tdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 434 TDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred cchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 9999999999999999999999999999999999999997643 45566654
No 30
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.93 E-value=2e-23 Score=251.09 Aligned_cols=411 Identities=20% Similarity=0.213 Sum_probs=242.7
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCCce
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 484 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~~~ 484 (1125)
..||+||.+-++-.+ +.|.|+|.+||+|||.+|+.++..+++..+. +.+++.+|+ .++.|....|..++-...
T Consensus 61 ~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~~~ 134 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIPYS 134 (746)
T ss_pred ccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCccc
Confidence 589999999998665 6899999999999999998888877776544 899999999 678888888888875555
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhc---cCeeEEEEcCCcccC-Chh-hHHHHHHHc--cc
Q 001197 485 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKK---VQWIYMIVDEGHRLK-NHE-CALAKTISG--YQ 557 (1125)
Q Consensus 485 vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~k---i~w~~VIIDEAHriK-N~~-SklskaL~~--l~ 557 (1125)
+....|....+......+ ...+|++.|.+.+.++...-.. -.|.+||||||||.. |.. +...+.+.. +.
T Consensus 135 ~T~~l~~~~~~~~r~~i~----~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~ 210 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNRGEIV----ASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQ 210 (746)
T ss_pred ceeeccCccCCCchhhhh----cccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhc
Confidence 666555533322222222 4578999999999987543332 359999999999974 432 223323322 24
Q ss_pred cceEEEeecCCCCCChHHHHHHhhccCCCC--CCChHHHHHHhcccccc-cCcccCChHHHHHHHHHHHhhhhhhhhhhh
Q 001197 558 IQRRLLLTGTPIQNSLQELWSLLNFLLPTI--FNSVENFEEWFNAPFKD-RGQVALTDEEQLLIIRRLHHVIRPFILRRK 634 (1125)
Q Consensus 558 s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~--f~s~~~F~~~f~~p~~~-~~~~~~~~ee~~~~i~rL~~vL~pflLRR~ 634 (1125)
..+.|+|||||- ++....-+.+.=|...+ ...... ..-+..--.. ...+. -.........+|..+++|++.+-.
T Consensus 211 ~~qILgLTASpG-~~~~~v~~~I~~L~asldvr~~ssi-~~~y~~lr~~~~i~v~-~~~~~~~~~~~f~~~i~p~l~~l~ 287 (746)
T KOG0354|consen 211 GNQILGLTASPG-SKLEQVQNVIDNLCASLDVRTESSI-KSNYEELREHVQIPVD-LSLCERDIEDPFGMIIEPLLQQLQ 287 (746)
T ss_pred cccEEEEecCCC-ccHHHHHHHHHhhheecccchhhhh-hhhHHHHhccCcccCc-HHHhhhhhhhhHHHHHHHHHHHHH
Confidence 448899999997 66666655554443331 111100 1111100000 00111 112223345667777788775433
Q ss_pred HHHHhh-h-----------------CCCCeEEEEEecCCHHHHHHHHHHH--hhccc---cccc--CCCccchHHHHHHH
Q 001197 635 KDEVEK-Y-----------------LPGKSQVILKCDMSAWQKVYYQQVT--DVGRV---GLDT--GTGKSKSLQNLSMQ 689 (1125)
Q Consensus 635 K~dV~~-~-----------------LP~k~e~vi~~~ms~~Q~~lY~~i~--~~~~~---~l~~--~~~k~~~l~n~~~q 689 (1125)
...+.. . .|......-.| +.......|.... ..+.. .+.. .......+.. .
T Consensus 288 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k---~ 363 (746)
T KOG0354|consen 288 EEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNC-FYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKK---Y 363 (746)
T ss_pred hcCccccccccccccchhhhhhhhhccCCCccchhh-HHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhH---H
Confidence 221110 0 00000000000 1111111110000 00000 0000 0000000000 0
Q ss_pred HHHhh---CCCcccccccchhhHHHH----HhhcchHHHHHHHhHHhhh--CCCEEEEEeccchHHHHHHHHHH-h--CC
Q 001197 690 LRKCC---NHPYLFVGEYNMWRKEEI----IRASGKFELLDRLLPKLRK--SGHRVLLFSQMTRLMDILEIYLK-L--ND 757 (1125)
Q Consensus 690 LRkic---nhP~L~~~~~~~~~~~~l----i~~S~Kle~L~~lL~kl~~--~g~KVLIFsq~t~~ldiLe~~L~-~--~g 757 (1125)
+.... .|+++... .. ..+.+ -...+|++.|.++|..... +..|+|||+.++...+.|..+|. . .|
T Consensus 364 ~~~~~e~~~~~~~~~~-m~--~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ 440 (746)
T KOG0354|consen 364 LKLELEARLIRNFTEN-MN--ELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELG 440 (746)
T ss_pred HHHHhcchhhHHHHHH-HH--hhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcc
Confidence 00000 00000000 00 00000 0236899999998877654 56799999999999999999987 2 24
Q ss_pred CeEEEecC--------CCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcc
Q 001197 758 FKFLRLDG--------STKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHR 829 (1125)
Q Consensus 758 i~~~rLdG--------sts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahR 829 (1125)
++...+-| +|+..+..+.|++|++|..+ +|++|..|.+|||+..||.||.||..-||...+||+|| +|
T Consensus 441 ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR 516 (746)
T KOG0354|consen 441 IKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GR 516 (746)
T ss_pred cccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cc
Confidence 45444444 57889999999999998877 79999999999999999999999999999999999999 77
Q ss_pred cCCCCcEEEEEEEe
Q 001197 830 IGQKKEVRVFVLVS 843 (1125)
Q Consensus 830 IGQkk~V~VyrLIt 843 (1125)
.- +-+++-|.+
T Consensus 517 a~---ns~~vll~t 527 (746)
T KOG0354|consen 517 AR---NSKCVLLTT 527 (746)
T ss_pred cc---CCeEEEEEc
Confidence 54 444444444
No 31
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.93 E-value=1.2e-23 Score=258.54 Aligned_cols=303 Identities=19% Similarity=0.266 Sum_probs=217.4
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCCce
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 484 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~~~ 484 (1125)
.+++|+|.+++.-++. +.+.+++.++|.|||+.+...+. .. .|.+|||+|+ +++.++...+.... +.
T Consensus 12 ~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal--~~----~g~~lVisPl~sL~~dq~~~l~~~g--i~ 79 (591)
T TIGR01389 12 DDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPAL--LL----KGLTVVISPLISLMKDQVDQLRAAG--VA 79 (591)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHH--Hc----CCcEEEEcCCHHHHHHHHHHHHHcC--Cc
Confidence 3799999999987775 67899999999999998754332 22 3578999998 88899999998863 55
Q ss_pred EEEEcCChh--HHHHHHHHHHhhcCCccEEEecHHHHHHh--HHhhhccCeeEEEEcCCcccCChh-------hHHHHHH
Q 001197 485 AVVYDGRPD--ERKAMREEFFSERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDEGHRLKNHE-------CALAKTI 553 (1125)
Q Consensus 485 vivy~G~~~--~R~~l~~~~~~~~~~fdVvITTYe~l~kd--~~~L~ki~w~~VIIDEAHriKN~~-------SklskaL 553 (1125)
+..+++... +...+...... +.++++++|++.+... ...+......+|||||||.+.... ..+....
T Consensus 80 ~~~~~s~~~~~~~~~~~~~l~~--~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~ 157 (591)
T TIGR01389 80 AAYLNSTLSAKEQQDIEKALVN--GELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLA 157 (591)
T ss_pred EEEEeCCCCHHHHHHHHHHHhC--CCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHH
Confidence 555655432 23333323322 6789999999988542 345666789999999999986432 1333334
Q ss_pred HccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 001197 554 SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 633 (1125)
Q Consensus 554 ~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR 633 (1125)
..++....++||||+-.....++...+.+-.|..+.+. |.
T Consensus 158 ~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~------~~---------------------------------- 197 (591)
T TIGR01389 158 ERFPQVPRIALTATADAETRQDIRELLRLADANEFITS------FD---------------------------------- 197 (591)
T ss_pred HhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC------CC----------------------------------
Confidence 55656669999999866655555554433222111000 00
Q ss_pred hHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHH
Q 001197 634 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 713 (1125)
Q Consensus 634 ~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li 713 (1125)
.|.....++.
T Consensus 198 --------r~nl~~~v~~-------------------------------------------------------------- 207 (591)
T TIGR01389 198 --------RPNLRFSVVK-------------------------------------------------------------- 207 (591)
T ss_pred --------CCCcEEEEEe--------------------------------------------------------------
Confidence 0100000000
Q ss_pred hhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeec
Q 001197 714 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 793 (1125)
Q Consensus 714 ~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLST 793 (1125)
...+...+..++... .+.++||||......+.+..+|...|+.+..+||+++.++|..+++.|..+... +|++|
T Consensus 208 -~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~---vlVaT 281 (591)
T TIGR01389 208 -KNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVK---VMVAT 281 (591)
T ss_pred -CCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCc---EEEEe
Confidence 001222333333322 267899999999999999999999999999999999999999999999987755 79999
Q ss_pred cccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEE
Q 001197 794 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRV 838 (1125)
Q Consensus 794 rAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~V 838 (1125)
.+.|.|||+++++.||+||+|+|+..|.|++||++|.|+...+.+
T Consensus 282 ~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 282 NAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred chhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEE
Confidence 999999999999999999999999999999999999997766543
No 32
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.93 E-value=1.6e-23 Score=248.35 Aligned_cols=314 Identities=18% Similarity=0.207 Sum_probs=212.0
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHH-HHHc---cCCCCCEEEEcCc-ccHHHHHHHHHhhC
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAY-LLEN---KGVTGPHVIVAPK-AVLPNWINEFSTWA 480 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~-L~e~---~~~~gp~LIVvP~-sll~qW~~Ef~k~~ 480 (1125)
.++.|+|.+++..++. +.+.|+..++|+|||+.++..+.. +... ......+||++|. .++.|+...+..|+
T Consensus 22 ~~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 3689999999987774 678899999999999987655443 3321 1122468999998 67888888887775
Q ss_pred C--CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHH--hhhccCeeEEEEcCCcccCChh--hHHHHHHH
Q 001197 481 P--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHE--CALAKTIS 554 (1125)
Q Consensus 481 p--~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~--~L~ki~w~~VIIDEAHriKN~~--SklskaL~ 554 (1125)
. ++.+..+.|........ .... ..++|+|+|++.+..... .+....+.+|||||||++-... ..+...+.
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~--~~l~--~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~ 173 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHA--EVFS--ENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAA 173 (434)
T ss_pred ccCCcEEEEEECCCCHHHHH--HHhc--CCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHH
Confidence 3 46777777654432221 1112 568999999998875432 2223356789999999986543 22333333
Q ss_pred cc-ccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 001197 555 GY-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 633 (1125)
Q Consensus 555 ~l-~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR 633 (1125)
.+ .....+++|||+-...+.+ |..++...
T Consensus 174 ~~~~~~q~~~~SAT~~~~~~~~------------------~~~~~~~~-------------------------------- 203 (434)
T PRK11192 174 ETRWRKQTLLFSATLEGDAVQD------------------FAERLLND-------------------------------- 203 (434)
T ss_pred hCccccEEEEEEeecCHHHHHH------------------HHHHHccC--------------------------------
Confidence 33 2345689999974221211 11111000
Q ss_pred hHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHH
Q 001197 634 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 713 (1125)
Q Consensus 634 ~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li 713 (1125)
| . .+.+..+... .. . ..|-+... +
T Consensus 204 ---------~--~--~i~~~~~~~~-----------~~-------~--------------i~~~~~~~-~---------- 227 (434)
T PRK11192 204 ---------P--V--EVEAEPSRRE-----------RK-------K--------------IHQWYYRA-D---------- 227 (434)
T ss_pred ---------C--E--EEEecCCccc-----------cc-------C--------------ceEEEEEe-C----------
Confidence 0 0 0000000000 00 0 00000000 0
Q ss_pred hhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeec
Q 001197 714 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 793 (1125)
Q Consensus 714 ~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLST 793 (1125)
....|..+|..++.. ....++||||+....++.+...|...|+.+..++|+++..+|..+++.|+.+... +|++|
T Consensus 228 ~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~---vLVaT 302 (434)
T PRK11192 228 DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVN---VLVAT 302 (434)
T ss_pred CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCc---EEEEc
Confidence 011245556665543 2467999999999999999999999999999999999999999999999998765 79999
Q ss_pred cccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEE
Q 001197 794 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRV 838 (1125)
Q Consensus 794 rAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~V 838 (1125)
.++++|||++.+++||+||+|+++..|.|++||++|.|.+-.+.+
T Consensus 303 d~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 303 DVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred cccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 999999999999999999999999999999999999997755444
No 33
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.92 E-value=1.9e-23 Score=257.13 Aligned_cols=301 Identities=19% Similarity=0.230 Sum_probs=212.4
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCCceE
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAA 485 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~~~v 485 (1125)
.++|+|.+++.-++. +.++++..+||.|||+..+..+. .. .+.+|||+|+ +++.+|...+.... +.+
T Consensus 25 ~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal--~~----~g~tlVisPl~sL~~dqv~~l~~~g--i~~ 92 (607)
T PRK11057 25 QFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPAL--VL----DGLTLVVSPLISLMKDQVDQLLANG--VAA 92 (607)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHH--Hc----CCCEEEEecHHHHHHHHHHHHHHcC--CcE
Confidence 799999999987764 78899999999999987653332 22 3578999999 88888999888753 444
Q ss_pred EEEcCChhH--HHHHHHHHHhhcCCccEEEecHHHHHHh--HHhhhccCeeEEEEcCCcccCChh-------hHHHHHHH
Q 001197 486 VVYDGRPDE--RKAMREEFFSERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDEGHRLKNHE-------CALAKTIS 554 (1125)
Q Consensus 486 ivy~G~~~~--R~~l~~~~~~~~~~fdVvITTYe~l~kd--~~~L~ki~w~~VIIDEAHriKN~~-------SklskaL~ 554 (1125)
.++.+.... ......... .+..+++++|++.+... ...+...++.+|||||||.+.... ..+.....
T Consensus 93 ~~~~s~~~~~~~~~~~~~~~--~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~ 170 (607)
T PRK11057 93 ACLNSTQTREQQLEVMAGCR--TGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQ 170 (607)
T ss_pred EEEcCCCCHHHHHHHHHHHh--CCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHH
Confidence 445444322 222222222 26789999999988642 344555678999999999986532 12333334
Q ss_pred ccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhh
Q 001197 555 GYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 634 (1125)
Q Consensus 555 ~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~ 634 (1125)
.++....++||||+-.....++...+.+-.|..+... |.
T Consensus 171 ~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~------~~----------------------------------- 209 (607)
T PRK11057 171 RFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS------FD----------------------------------- 209 (607)
T ss_pred hCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC------CC-----------------------------------
Confidence 5566778999999866555555554443222211000 00
Q ss_pred HHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHh
Q 001197 635 KDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIR 714 (1125)
Q Consensus 635 K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~ 714 (1125)
.|.....++.
T Consensus 210 -------r~nl~~~v~~--------------------------------------------------------------- 219 (607)
T PRK11057 210 -------RPNIRYTLVE--------------------------------------------------------------- 219 (607)
T ss_pred -------CCcceeeeee---------------------------------------------------------------
Confidence 0000000000
Q ss_pred hcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecc
Q 001197 715 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 794 (1125)
Q Consensus 715 ~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTr 794 (1125)
...++..|..++.. ..+.++||||+.....+.+...|...|+.+..+||+++.++|..+++.|..+... +|++|.
T Consensus 220 ~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~---VLVaT~ 294 (607)
T PRK11057 220 KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQ---IVVATV 294 (607)
T ss_pred ccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCC---EEEEec
Confidence 00011112222221 3577899999999999999999999999999999999999999999999987765 699999
Q ss_pred ccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEE
Q 001197 795 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVR 837 (1125)
Q Consensus 795 AGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~ 837 (1125)
+.|.|||++.++.||+||+|.++..|.|++||++|.|....+.
T Consensus 295 a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~i 337 (607)
T PRK11057 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 337 (607)
T ss_pred hhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEE
Confidence 9999999999999999999999999999999999999776543
No 34
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=8.6e-24 Score=250.00 Aligned_cols=315 Identities=16% Similarity=0.199 Sum_probs=211.6
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHH-HHHHccC------CCCCEEEEcCc-ccHHHHHHHHHh
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA-YLLENKG------VTGPHVIVAPK-AVLPNWINEFST 478 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~-~L~e~~~------~~gp~LIVvP~-sll~qW~~Ef~k 478 (1125)
.+.|.|.+++.-++. +.+.|+..++|+|||+..+..+. .+..... ....+|||||+ .++.||..++..
T Consensus 30 ~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 788999999987765 77889999999999998765544 3333221 12358999999 778999888887
Q ss_pred hCC--CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHH--hhhccCeeEEEEcCCcccCChh--hHHHHH
Q 001197 479 WAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHE--CALAKT 552 (1125)
Q Consensus 479 ~~p--~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~--~L~ki~w~~VIIDEAHriKN~~--Sklska 552 (1125)
+.. ++.+.++.|......... .+ . ..++|+|+|++.+..... .+.--.+.+|||||||++-... ..+...
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~-~l-~--~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i 181 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLK-VL-E--SGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWL 181 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHH-Hh-c--CCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHH
Confidence 753 466666665443222211 11 1 468999999998866432 2333467899999999986533 223333
Q ss_pred HHccc---cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhh
Q 001197 553 ISGYQ---IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPF 629 (1125)
Q Consensus 553 L~~l~---s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pf 629 (1125)
+..+. ....+++|||.-. .+.++.. .++..
T Consensus 182 ~~~~~~~~~~~~~l~SAT~~~-~~~~~~~-----------------~~~~~----------------------------- 214 (423)
T PRK04837 182 FRRMPPANQRLNMLFSATLSY-RVRELAF-----------------EHMNN----------------------------- 214 (423)
T ss_pred HHhCCCccceeEEEEeccCCH-HHHHHHH-----------------HHCCC-----------------------------
Confidence 34443 2335788999621 1111100 00000
Q ss_pred hhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhH
Q 001197 630 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRK 709 (1125)
Q Consensus 630 lLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~ 709 (1125)
| .. +.+.... . .... + .+.++..
T Consensus 215 -------------p--~~--i~v~~~~-----------~----------~~~~-------i----~~~~~~~-------- 237 (423)
T PRK04837 215 -------------P--EY--VEVEPEQ-----------K----------TGHR-------I----KEELFYP-------- 237 (423)
T ss_pred -------------C--EE--EEEcCCC-----------c----------CCCc-------e----eEEEEeC--------
Confidence 0 00 0000000 0 0000 0 0000000
Q ss_pred HHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEE
Q 001197 710 EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMF 789 (1125)
Q Consensus 710 ~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~Vf 789 (1125)
....|+..|..++.. ....++||||+....++.+...|...|+.+..++|.++..+|..+++.|+.+... +
T Consensus 238 ----~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~---v 308 (423)
T PRK04837 238 ----SNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD---I 308 (423)
T ss_pred ----CHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCc---E
Confidence 012245556666543 2467999999999999999999999999999999999999999999999998766 7
Q ss_pred EeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeC
Q 001197 790 LLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 844 (1125)
Q Consensus 790 LLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~ 844 (1125)
|++|.++++|||++.+++||+||+|+++..|.|++||++|.|+.-. ++.|++.
T Consensus 309 LVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 309 LVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred EEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCee--EEEEeCH
Confidence 9999999999999999999999999999999999999999996643 4455543
No 35
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=2e-23 Score=250.43 Aligned_cols=317 Identities=19% Similarity=0.270 Sum_probs=213.3
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHH-HHHHccCC------CCCEEEEcCc-ccHHHHHHHHH
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA-YLLENKGV------TGPHVIVAPK-AVLPNWINEFS 477 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~-~L~e~~~~------~gp~LIVvP~-sll~qW~~Ef~ 477 (1125)
..+.|+|.+++..++. +.+.|++.++|+|||+..+..+. .+...... ....|||+|+ .|..||...+.
T Consensus 108 ~~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~ 183 (475)
T PRK01297 108 PYCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAA 183 (475)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 3799999999986664 78899999999999988764443 34332211 2358999999 78889999888
Q ss_pred hhCC--CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHh--hhccCeeEEEEcCCcccCChh--hHHHH
Q 001197 478 TWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAK 551 (1125)
Q Consensus 478 k~~p--~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~--L~ki~w~~VIIDEAHriKN~~--Sklsk 551 (1125)
.+.. ++.+..+.|......... .+.. ..++|+|+|++.+...... +.--...+|||||+|++.+.. ..+..
T Consensus 184 ~l~~~~~~~v~~~~gg~~~~~~~~-~~~~--~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~ 260 (475)
T PRK01297 184 ALTKYTGLNVMTFVGGMDFDKQLK-QLEA--RFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQ 260 (475)
T ss_pred HhhccCCCEEEEEEccCChHHHHH-HHhC--CCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHH
Confidence 7753 466777766543322221 1111 5689999999998653321 112256799999999996543 23444
Q ss_pred HHHccc---cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhh
Q 001197 552 TISGYQ---IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 628 (1125)
Q Consensus 552 aL~~l~---s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~p 628 (1125)
.+..+. ....+++|+|... ++.++ .. .|...+.
T Consensus 261 i~~~~~~~~~~q~i~~SAT~~~-~~~~~---~~--------------~~~~~~~-------------------------- 296 (475)
T PRK01297 261 IIRQTPRKEERQTLLFSATFTD-DVMNL---AK--------------QWTTDPA-------------------------- 296 (475)
T ss_pred HHHhCCCCCCceEEEEEeecCH-HHHHH---HH--------------HhccCCE--------------------------
Confidence 444442 3467899999521 11111 10 0000000
Q ss_pred hhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhh
Q 001197 629 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 708 (1125)
Q Consensus 629 flLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~ 708 (1125)
.+.+.... .. . ..+ . .|-+.
T Consensus 297 --------------------~v~~~~~~--------------~~--~-----~~~-------~---~~~~~--------- 316 (475)
T PRK01297 297 --------------------IVEIEPEN--------------VA--S-----DTV-------E---QHVYA--------- 316 (475)
T ss_pred --------------------EEEeccCc--------------CC--C-----Ccc-------c---EEEEE---------
Confidence 00000000 00 0 000 0 00000
Q ss_pred HHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceE
Q 001197 709 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 788 (1125)
Q Consensus 709 ~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~V 788 (1125)
+..+.|..+|..++.. ....++||||+.....+.+...|...|+.+..++|.++.++|..+++.|.++...
T Consensus 317 ----~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~--- 387 (475)
T PRK01297 317 ----VAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIR--- 387 (475)
T ss_pred ----ecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCc---
Confidence 0112345555555543 2456999999999999999999999999999999999999999999999988765
Q ss_pred EEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeC
Q 001197 789 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 844 (1125)
Q Consensus 789 fLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~ 844 (1125)
+|++|.++++|||+.++++||+||+|+++..|+|+.||++|.|+.-. ++.|++.
T Consensus 388 vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~ 441 (475)
T PRK01297 388 VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGV--SISFAGE 441 (475)
T ss_pred EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCce--EEEEecH
Confidence 68999999999999999999999999999999999999999997643 4444543
No 36
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.92 E-value=1.1e-23 Score=251.35 Aligned_cols=310 Identities=18% Similarity=0.243 Sum_probs=208.5
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCC------CCCEEEEcCc-ccHHHHHHHHHh
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV------TGPHVIVAPK-AVLPNWINEFST 478 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~------~gp~LIVvP~-sll~qW~~Ef~k 478 (1125)
..+.|+|.+++..++. +.+.|+..++|+|||+..+..+...+..... ...+|||||+ .|..||..++..
T Consensus 22 ~~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~ 97 (456)
T PRK10590 22 REPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRD 97 (456)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHH
Confidence 3789999999987764 7788999999999999976655444322111 1248999999 788999999998
Q ss_pred hCC--CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHH--hhhccCeeEEEEcCCcccCChh--hHHHHH
Q 001197 479 WAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHE--CALAKT 552 (1125)
Q Consensus 479 ~~p--~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~--~L~ki~w~~VIIDEAHriKN~~--Sklska 552 (1125)
++. .+.++...|.......... + .+.++|+|+|++.+..... .+......+|||||||++-... ..+...
T Consensus 98 ~~~~~~~~~~~~~gg~~~~~~~~~-l---~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~i 173 (456)
T PRK10590 98 YSKYLNIRSLVVFGGVSINPQMMK-L---RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRV 173 (456)
T ss_pred HhccCCCEEEEEECCcCHHHHHHH-H---cCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHH
Confidence 764 3555555554333222211 1 1578999999998866432 2223467899999999986543 233344
Q ss_pred HHcccc-ceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhh
Q 001197 553 ISGYQI-QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 631 (1125)
Q Consensus 553 L~~l~s-~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflL 631 (1125)
+..+.. ...+++|||+-. .+.++ ...+ +..+... ...
T Consensus 174 l~~l~~~~q~l~~SAT~~~-~~~~l---~~~~--------------~~~~~~i----~~~-------------------- 211 (456)
T PRK10590 174 LAKLPAKRQNLLFSATFSD-DIKAL---AEKL--------------LHNPLEI----EVA-------------------- 211 (456)
T ss_pred HHhCCccCeEEEEeCCCcH-HHHHH---HHHH--------------cCCCeEE----EEe--------------------
Confidence 455533 457899999621 11111 1100 0000000 000
Q ss_pred hhhHHHHhhhCCCCe-EEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHH
Q 001197 632 RRKKDEVEKYLPGKS-QVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKE 710 (1125)
Q Consensus 632 RR~K~dV~~~LP~k~-e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~ 710 (1125)
++ ...++.. ..+..++
T Consensus 212 ~~------~~~~~~i~~~~~~~~--------------------------------------------------------- 228 (456)
T PRK10590 212 RR------NTASEQVTQHVHFVD--------------------------------------------------------- 228 (456)
T ss_pred cc------cccccceeEEEEEcC---------------------------------------------------------
Confidence 00 0000000 0000000
Q ss_pred HHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEE
Q 001197 711 EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 790 (1125)
Q Consensus 711 ~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfL 790 (1125)
...|..+|..++.. ...+++||||+.....+.+...|...|+.+..+||.++..+|..+++.|.++... +|
T Consensus 229 ----~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---iL 299 (456)
T PRK10590 229 ----KKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR---VL 299 (456)
T ss_pred ----HHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCc---EE
Confidence 01122333333332 2357899999999999999999999999999999999999999999999997765 69
Q ss_pred eeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEE
Q 001197 791 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVR 837 (1125)
Q Consensus 791 LSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~ 837 (1125)
++|.++++|||++++++||+||+|.++..|.|++||++|.|.+-.+.
T Consensus 300 VaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai 346 (456)
T PRK10590 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEAL 346 (456)
T ss_pred EEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEE
Confidence 99999999999999999999999999999999999999999765433
No 37
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.92 E-value=2.7e-23 Score=251.48 Aligned_cols=315 Identities=16% Similarity=0.198 Sum_probs=211.9
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHH-HHHHHc------cCCCCCEEEEcCc-ccHHHHHHHHH
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALI-AYLLEN------KGVTGPHVIVAPK-AVLPNWINEFS 477 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali-~~L~e~------~~~~gp~LIVvP~-sll~qW~~Ef~ 477 (1125)
..+.|+|.+++..++. +.+.|+..++|+|||+..+..+ ..+... ......+|||+|+ .|..|+..++.
T Consensus 142 ~~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 3799999999988774 7889999999999999876544 333321 1123358999999 67788888888
Q ss_pred hhCCC--ce-EEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHH--hhhccCeeEEEEcCCcccCCh--hhHHH
Q 001197 478 TWAPS--IA-AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNH--ECALA 550 (1125)
Q Consensus 478 k~~p~--~~-vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~--~L~ki~w~~VIIDEAHriKN~--~Skls 550 (1125)
.+... +. +.++.|..... ... .+ ...++|+|+|++.+..... .+......+|||||||+|... ...+.
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~-q~~-~l---~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~ 292 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQ-QLY-RI---QQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVM 292 (518)
T ss_pred HHhCCCCceEEEEECCcchHH-HHH-Hh---cCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHH
Confidence 77643 33 34455544322 211 11 1468999999998765432 222335679999999998653 23444
Q ss_pred HHHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhh
Q 001197 551 KTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 630 (1125)
Q Consensus 551 kaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pfl 630 (1125)
..+..+.....+++|||.-. .+. .+...+... + ..
T Consensus 293 ~i~~~l~~~q~l~~SATl~~-~v~---~l~~~~~~~--------------~---------------------------~~ 327 (518)
T PLN00206 293 QIFQALSQPQVLLFSATVSP-EVE---KFASSLAKD--------------I---------------------------IL 327 (518)
T ss_pred HHHHhCCCCcEEEEEeeCCH-HHH---HHHHHhCCC--------------C---------------------------EE
Confidence 55566677788999999621 111 111111000 0 00
Q ss_pred hhhhHHHHhhhCCCC--eEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhh
Q 001197 631 LRRKKDEVEKYLPGK--SQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 708 (1125)
Q Consensus 631 LRR~K~dV~~~LP~k--~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~ 708 (1125)
+.... ...|.. ....+++.
T Consensus 328 i~~~~----~~~~~~~v~q~~~~~~------------------------------------------------------- 348 (518)
T PLN00206 328 ISIGN----PNRPNKAVKQLAIWVE------------------------------------------------------- 348 (518)
T ss_pred EEeCC----CCCCCcceeEEEEecc-------------------------------------------------------
Confidence 00000 000000 01111111
Q ss_pred HHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHh-CCCeEEEecCCCCHHHHHHHHHHHcCCCCCce
Q 001197 709 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL-NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 787 (1125)
Q Consensus 709 ~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~-~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~ 787 (1125)
...|...|..++........++|||++.....+.+...|.. .|+.+..++|+++..+|..+++.|..+..+
T Consensus 349 ------~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~-- 420 (518)
T PLN00206 349 ------TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVP-- 420 (518)
T ss_pred ------chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCC--
Confidence 01122334444443333346899999999999999999974 699999999999999999999999998766
Q ss_pred EEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeC
Q 001197 788 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 844 (1125)
Q Consensus 788 VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~ 844 (1125)
+|++|.++++|||++.+++||+||+|.++..|.|++||++|.|.. -.++.|++.
T Consensus 421 -ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~--G~ai~f~~~ 474 (518)
T PLN00206 421 -VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEK--GTAIVFVNE 474 (518)
T ss_pred -EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCC--eEEEEEEch
Confidence 699999999999999999999999999999999999999999965 345556654
No 38
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=3.3e-23 Score=252.87 Aligned_cols=314 Identities=18% Similarity=0.235 Sum_probs=212.5
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHH-HHHcc------CCCCCEEEEcCc-ccHHHHHHHHHh
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAY-LLENK------GVTGPHVIVAPK-AVLPNWINEFST 478 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~-L~e~~------~~~gp~LIVvP~-sll~qW~~Ef~k 478 (1125)
.+.|.|..++..++. +.+.|+..++|+|||+..+..+.. +.... .....+|||||+ .|+.|+...+.+
T Consensus 31 ~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 31 RCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 789999999988875 788899999999999988665544 33221 112468999999 788999999998
Q ss_pred hCCC--ceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHH---hhhccCeeEEEEcCCcccCChh--hHHHH
Q 001197 479 WAPS--IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ---YLKKVQWIYMIVDEGHRLKNHE--CALAK 551 (1125)
Q Consensus 479 ~~p~--~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~---~L~ki~w~~VIIDEAHriKN~~--Sklsk 551 (1125)
|... +.+.+++|........ .... ..++|||+|++.+..... .+......+|||||||++-... ..+..
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~--~~l~--~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~ 182 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQR--ELLQ--QGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRF 182 (572)
T ss_pred HhccCCceEEEEECCCCHHHHH--HHHh--CCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHH
Confidence 8753 5565555544332221 1112 468999999998876432 2333356789999999985432 22333
Q ss_pred HHHccc---cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhh
Q 001197 552 TISGYQ---IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 628 (1125)
Q Consensus 552 aL~~l~---s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~p 628 (1125)
.+..+. ....+++|||.-. .+.++ .. .++..+...
T Consensus 183 il~~lp~~~~~q~ll~SATl~~-~v~~l---~~--------------~~l~~p~~i------------------------ 220 (572)
T PRK04537 183 LLRRMPERGTRQTLLFSATLSH-RVLEL---AY--------------EHMNEPEKL------------------------ 220 (572)
T ss_pred HHHhcccccCceEEEEeCCccH-HHHHH---HH--------------HHhcCCcEE------------------------
Confidence 344443 3467889999521 11111 10 000000000
Q ss_pred hhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhh
Q 001197 629 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 708 (1125)
Q Consensus 629 flLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~ 708 (1125)
.+ .. ....+......+.+.
T Consensus 221 -~v--~~---~~~~~~~i~q~~~~~------------------------------------------------------- 239 (572)
T PRK04537 221 -VV--ET---ETITAARVRQRIYFP------------------------------------------------------- 239 (572)
T ss_pred -Ee--cc---ccccccceeEEEEec-------------------------------------------------------
Confidence 00 00 000000000000000
Q ss_pred HHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceE
Q 001197 709 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 788 (1125)
Q Consensus 709 ~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~V 788 (1125)
....|+..|..++.. ..+.++||||+....++.|.+.|...|+.+..++|.++..+|..+++.|.++...
T Consensus 240 -----~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~--- 309 (572)
T PRK04537 240 -----ADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE--- 309 (572)
T ss_pred -----CHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCe---
Confidence 011234445555533 3578999999999999999999999999999999999999999999999987765
Q ss_pred EEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEe
Q 001197 789 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVS 843 (1125)
Q Consensus 789 fLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt 843 (1125)
+|++|.++++|||+..+++||+||.||++..|+|++||++|.|..-.+ +.|++
T Consensus 310 VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~a--i~~~~ 362 (572)
T PRK04537 310 ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDA--ISFAC 362 (572)
T ss_pred EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceE--EEEec
Confidence 799999999999999999999999999999999999999999976543 44454
No 39
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.92 E-value=1.1e-22 Score=249.95 Aligned_cols=325 Identities=14% Similarity=0.187 Sum_probs=217.9
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhC---C
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---P 481 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~---p 481 (1125)
.++.|+|.+++..++. +.+.|+..++|+|||++.+..+...+........+|||||+ .|+.||..++.+|. +
T Consensus 27 ~~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 3799999999988775 67889999999999998754444333332223467999999 78899999988764 5
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHH--hhhccCeeEEEEcCCcccCChh--hHHHHHHHccc
Q 001197 482 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHE--CALAKTISGYQ 557 (1125)
Q Consensus 482 ~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~--~L~ki~w~~VIIDEAHriKN~~--SklskaL~~l~ 557 (1125)
.+.++.++|.......+... ....+|||+|++.+..... .+.-..+.+|||||||.+-+.. ..+...+..++
T Consensus 103 ~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp 178 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 (629)
T ss_pred CceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCC
Confidence 67776666554333222211 1468999999999876432 1223367789999999986543 23444555554
Q ss_pred -cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHH
Q 001197 558 -IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 636 (1125)
Q Consensus 558 -s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~ 636 (1125)
....+++|||.- ..+.++ . ..|
T Consensus 179 ~~~q~llfSAT~p-~~i~~i---~---------------~~~-------------------------------------- 201 (629)
T PRK11634 179 EGHQTALFSATMP-EAIRRI---T---------------RRF-------------------------------------- 201 (629)
T ss_pred CCCeEEEEEccCC-hhHHHH---H---------------HHH--------------------------------------
Confidence 345688999951 111111 0 000
Q ss_pred HHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhc
Q 001197 637 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 716 (1125)
Q Consensus 637 dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S 716 (1125)
+.......+..... ... ...+.|+. +...
T Consensus 202 -----l~~~~~i~i~~~~~-----------------------~~~-----------~i~q~~~~------------v~~~ 230 (629)
T PRK11634 202 -----MKEPQEVRIQSSVT-----------------------TRP-----------DISQSYWT------------VWGM 230 (629)
T ss_pred -----cCCCeEEEccCccc-----------------------cCC-----------ceEEEEEE------------echh
Confidence 00000000000000 000 00000000 0012
Q ss_pred chHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecccc
Q 001197 717 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 796 (1125)
Q Consensus 717 ~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAG 796 (1125)
.|...|.++|.. ....++||||......+.+...|...|+....++|.++..+|..+++.|..+... +|++|.++
T Consensus 231 ~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~---ILVATdv~ 305 (629)
T PRK11634 231 RKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD---ILIATDVA 305 (629)
T ss_pred hHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCC---EEEEcchH
Confidence 255556666643 2346899999999999999999999999999999999999999999999998766 79999999
Q ss_pred ccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 001197 797 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERA 855 (1125)
Q Consensus 797 G~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~r~ 855 (1125)
+.|||++.+++||+||+|.++..|.|++||++|.|..-. .+.|++. -|..++..+
T Consensus 306 arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~--ai~~v~~--~e~~~l~~i 360 (629)
T PRK11634 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR--ALLFVEN--RERRLLRNI 360 (629)
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcce--EEEEech--HHHHHHHHH
Confidence 999999999999999999999999999999999997543 3334432 344444444
No 40
>PTZ00424 helicase 45; Provisional
Probab=99.92 E-value=6.5e-23 Score=240.23 Aligned_cols=318 Identities=18% Similarity=0.239 Sum_probs=211.2
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCC--C
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 482 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p--~ 482 (1125)
..+.|+|..++..++. +.+.|+..++|+|||+.++..+...+........+|||+|. .++.|+...+..++. .
T Consensus 49 ~~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 49 EKPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 3799999999987775 77889999999999998765555554433334568999998 677788777777653 3
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHH--hhhccCeeEEEEcCCcccCCh--hhHHHHHHHccc-
Q 001197 483 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNH--ECALAKTISGYQ- 557 (1125)
Q Consensus 483 ~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~--~L~ki~w~~VIIDEAHriKN~--~SklskaL~~l~- 557 (1125)
..+....|....+.... .+. ...+|+|+|++.+..... .+..-++++|||||+|++... ...+...+..+.
T Consensus 125 ~~~~~~~g~~~~~~~~~-~~~---~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~ 200 (401)
T PTZ00424 125 VRCHACVGGTVVRDDIN-KLK---AGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPP 200 (401)
T ss_pred ceEEEEECCcCHHHHHH-HHc---CCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCC
Confidence 44444455443332221 111 457899999998765322 233346789999999998543 334555555553
Q ss_pred cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHHH
Q 001197 558 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 637 (1125)
Q Consensus 558 s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~d 637 (1125)
....+++|||+-. ...++... | +..+... ... ...
T Consensus 201 ~~~~i~~SAT~~~-~~~~~~~~--~---------------~~~~~~~-------------------------~~~--~~~ 235 (401)
T PTZ00424 201 DVQVALFSATMPN-EILELTTK--F---------------MRDPKRI-------------------------LVK--KDE 235 (401)
T ss_pred CcEEEEEEecCCH-HHHHHHHH--H---------------cCCCEEE-------------------------EeC--CCC
Confidence 4568999999621 11111000 0 0000000 000 000
Q ss_pred HhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhcc
Q 001197 638 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 717 (1125)
Q Consensus 638 V~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S~ 717 (1125)
+ .+.......+.++. ...
T Consensus 236 ~--~~~~~~~~~~~~~~------------------------------------------------------------~~~ 253 (401)
T PTZ00424 236 L--TLEGIRQFYVAVEK------------------------------------------------------------EEW 253 (401)
T ss_pred c--ccCCceEEEEecCh------------------------------------------------------------HHH
Confidence 0 00000000000000 000
Q ss_pred hHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccc
Q 001197 718 KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 797 (1125)
Q Consensus 718 Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG 797 (1125)
+...+..++.. ....++||||.....++.+...|...++.+..++|+++.++|..+++.|+++... +|++|.+++
T Consensus 254 ~~~~l~~~~~~--~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~---vLvaT~~l~ 328 (401)
T PTZ00424 254 KFDTLCDLYET--LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTR---VLITTDLLA 328 (401)
T ss_pred HHHHHHHHHHh--cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC---EEEEccccc
Confidence 12222333322 1356899999999999999999999999999999999999999999999997765 699999999
Q ss_pred cccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCC
Q 001197 798 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 845 (1125)
Q Consensus 798 ~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~ 845 (1125)
+|||++.+++||+||++.++..+.|++||++|.|.. -.++.|++.+
T Consensus 329 ~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~ 374 (401)
T PTZ00424 329 RGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPD 374 (401)
T ss_pred CCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHH
Confidence 999999999999999999999999999999999854 4556677654
No 41
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.9e-23 Score=236.01 Aligned_cols=385 Identities=20% Similarity=0.322 Sum_probs=260.3
Q ss_pred CCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCccc-HHHHHHHHHhhCC--
Q 001197 405 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV-LPNWINEFSTWAP-- 481 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sl-l~qW~~Ef~k~~p-- 481 (1125)
..++||||...+.-|...- ....||+..+.|.|||+..+..++.. .+.+||+|..++ +.||..+|..|..
T Consensus 300 st~iRpYQEksL~KMFGNg-RARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~ 372 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQ 372 (776)
T ss_pred ccccCchHHHHHHHHhCCC-cccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccC
Confidence 3589999999999776411 12468999999999999988776543 346899998866 9999999999973
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHH----------hHHhhhccCeeEEEEcCCcccCChhhHHHH
Q 001197 482 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMR----------DRQYLKKVQWIYMIVDEGHRLKNHECALAK 551 (1125)
Q Consensus 482 ~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~k----------d~~~L~ki~w~~VIIDEAHriKN~~Sklsk 551 (1125)
.-.+..|....+++.. ....|+||||.++.. -..++....|.++|+||+|-+- +++++
T Consensus 373 d~~i~rFTsd~Ke~~~---------~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvP---A~MFR 440 (776)
T KOG1123|consen 373 DDQICRFTSDAKERFP---------SGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVP---AKMFR 440 (776)
T ss_pred ccceEEeeccccccCC---------CCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccch---HHHHH
Confidence 3455666665554422 567799999999842 2466888899999999999873 34444
Q ss_pred H-HHccccceEEEeecCCCCCChHHHHHHhhcc-CCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhh
Q 001197 552 T-ISGYQIQRRLLLTGTPIQNSLQELWSLLNFL-LPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPF 629 (1125)
Q Consensus 552 a-L~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL-~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pf 629 (1125)
. +.-..+...|+||||-+... |=..=|||| .|.++.. +|.+.-.
T Consensus 441 RVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYEA--nWmdL~~------------------------------ 486 (776)
T KOG1123|consen 441 RVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA--NWMDLQK------------------------------ 486 (776)
T ss_pred HHHHHHHHHhhccceeEEeecc--ccccccceeecchhhhc--cHHHHHh------------------------------
Confidence 4 45668889999999987653 222234665 3544331 1111000
Q ss_pred hhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhH
Q 001197 630 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRK 709 (1125)
Q Consensus 630 lLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~ 709 (1125)
...+.......|||+||++ +|...+.... +.+.+..
T Consensus 487 ---------kGhIA~VqCaEVWCpMt~e---Fy~eYL~~~t--------~kr~lLy------------------------ 522 (776)
T KOG1123|consen 487 ---------KGHIAKVQCAEVWCPMTPE---FYREYLRENT--------RKRMLLY------------------------ 522 (776)
T ss_pred ---------CCceeEEeeeeeecCCCHH---HHHHHHhhhh--------hhhheee------------------------
Confidence 0123344566799999986 4444432110 0000000
Q ss_pred HHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEE
Q 001197 710 EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMF 789 (1125)
Q Consensus 710 ~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~Vf 789 (1125)
+-...||....-++......|.|+|||+...-.|. .|--..|-+ .|.|.|++.+|-.+++.|+..+ .+..+
T Consensus 523 ---vMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk---~YAikl~Kp--fIYG~Tsq~ERm~ILqnFq~n~-~vNTI 593 (776)
T KOG1123|consen 523 ---VMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALK---EYAIKLGKP--FIYGPTSQNERMKILQNFQTNP-KVNTI 593 (776)
T ss_pred ---ecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHH---HHHHHcCCc--eEECCCchhHHHHHHHhcccCC-ccceE
Confidence 12456899998899888889999999998865444 443344444 4689999999999999999744 34443
Q ss_pred EeeccccccccCCCCCCEEEEeCCCC-ChhhHHHHHhhhcccCCCC----cEEEEEEEeCCCHHHHHHHHHHHHhhHHH-
Q 001197 790 LLSTRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKK----EVRVFVLVSVGSIEEVILERAKQKMGIDA- 863 (1125)
Q Consensus 790 LLSTrAGG~GLNLq~Ad~VIi~D~~W-NP~~d~QAigRahRIGQkk----~V~VyrLIt~~TIEE~Il~r~~~Kl~l~~- 863 (1125)
.+ +++|...++|+.|+.+|-..+.. +-.++.||.||+.|---.+ ++..|.||+.+|.|-. -.-++..-|.+
T Consensus 594 Fl-SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~--YStKRQ~FLidQ 670 (776)
T KOG1123|consen 594 FL-SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY--YSTKRQQFLIDQ 670 (776)
T ss_pred EE-eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH--hhhhhhhhhhhc
Confidence 33 58999999999999999998886 5778999999999975333 3899999999998733 22222222211
Q ss_pred ----HHHhc--CcCC----CCCCHHHHHHHHHHHHHhcccCCCCC
Q 001197 864 ----KVIQA--GLFN----TTSTAQDRREMLKEIMRRGTSSLGTD 898 (1125)
Q Consensus 864 ----~VI~~--g~~~----~~s~~~d~~e~L~~il~~~~~~~~~~ 898 (1125)
+||.. |+-+ .-.+.+++.++|..+|.......+.+
T Consensus 671 GYsfkVit~L~gme~~~~l~y~skeeq~~LLq~Vl~a~d~~~e~E 715 (776)
T KOG1123|consen 671 GYSFKVITNLPGMENLEDLAYASKEEQLELLQKVLLASDLDAELE 715 (776)
T ss_pred CceEEEeecCCCcCcCcccccCCHHHHHHHHHHHHhcchhhhccc
Confidence 22221 1111 13466778888888887665544433
No 42
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.91 E-value=6.8e-23 Score=256.06 Aligned_cols=309 Identities=17% Similarity=0.191 Sum_probs=212.2
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCCce
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 484 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~~~ 484 (1125)
..+||+|.+++..++. +.+.|+..++|.|||+.....+.. ..|.+|||+|+ +|+.++...+... ++.
T Consensus 459 ~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPAL~------~~GiTLVISPLiSLmqDQV~~L~~~--GI~ 526 (1195)
T PLN03137 459 HSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPALI------CPGITLVISPLVSLIQDQIMNLLQA--NIP 526 (1195)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhC--CCe
Confidence 4899999999988775 788999999999999887544422 13678999999 7776666666553 455
Q ss_pred EEEEcCChh--HHHHHHHHHHhhcCCccEEEecHHHHHHh---HHhhh----ccCeeEEEEcCCcccCChhh-------H
Q 001197 485 AVVYDGRPD--ERKAMREEFFSERGRFNVLITHYDLIMRD---RQYLK----KVQWIYMIVDEGHRLKNHEC-------A 548 (1125)
Q Consensus 485 vivy~G~~~--~R~~l~~~~~~~~~~fdVvITTYe~l~kd---~~~L~----ki~w~~VIIDEAHriKN~~S-------k 548 (1125)
+....+... +...+........+.++||++|++.+... ...+. .....+|||||||.+-.... .
T Consensus 527 Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~ 606 (1195)
T PLN03137 527 AASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQG 606 (1195)
T ss_pred EEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHH
Confidence 554544332 22222333332336799999999987542 12222 12478899999999865321 1
Q ss_pred HHHHHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhh
Q 001197 549 LAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 628 (1125)
Q Consensus 549 lskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~p 628 (1125)
+......+.....++||||.......++...|.+..+.+|. .-|.
T Consensus 607 L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr------~Sf~----------------------------- 651 (1195)
T PLN03137 607 LGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR------QSFN----------------------------- 651 (1195)
T ss_pred HHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee------cccC-----------------------------
Confidence 22223456677889999998666666665554433222111 0000
Q ss_pred hhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhh
Q 001197 629 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 708 (1125)
Q Consensus 629 flLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~ 708 (1125)
-|.....++ +-.
T Consensus 652 -------------RpNL~y~Vv--~k~----------------------------------------------------- 663 (1195)
T PLN03137 652 -------------RPNLWYSVV--PKT----------------------------------------------------- 663 (1195)
T ss_pred -------------ccceEEEEe--ccc-----------------------------------------------------
Confidence 011000000 000
Q ss_pred HHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceE
Q 001197 709 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 788 (1125)
Q Consensus 709 ~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~V 788 (1125)
...+..|.+++... ..+...||||......+.+..+|...|+....+||+++.++|..+++.|..+...
T Consensus 664 -------kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~--- 732 (1195)
T PLN03137 664 -------KKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEIN--- 732 (1195)
T ss_pred -------hhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCc---
Confidence 00011122222111 1245789999999999999999999999999999999999999999999998765
Q ss_pred EEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEE
Q 001197 789 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFV 840 (1125)
Q Consensus 789 fLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~Vyr 840 (1125)
+|++|.|+|+|||++.+++||+||+|.++..|.|++|||+|.|+...+..|+
T Consensus 733 VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 733 IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 6999999999999999999999999999999999999999999987765554
No 43
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=5.8e-22 Score=232.50 Aligned_cols=311 Identities=23% Similarity=0.317 Sum_probs=218.4
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHH-HHHHHHHHc----cCCCCC-EEEEcCc-ccHHHHHHHHHhh
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLEN----KGVTGP-HVIVAPK-AVLPNWINEFSTW 479 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaI-ali~~L~e~----~~~~gp-~LIVvP~-sll~qW~~Ef~k~ 479 (1125)
.+.|-|..+.-.+++ +.+.|....+|+|||+..+ -+|.++... ....+| +||++|+ -+..|-..++..+
T Consensus 113 ~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 677888887766665 7888999999999999865 344455441 122345 8999999 6777888888888
Q ss_pred CCCce---EEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHH--hhhccCeeEEEEcCCcccCC--hhhHHHHH
Q 001197 480 APSIA---AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKN--HECALAKT 552 (1125)
Q Consensus 480 ~p~~~---vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~--~L~ki~w~~VIIDEAHriKN--~~Sklska 552 (1125)
..... +++|.|.+. ..++.... ...+|+|+|+..+..... .+.--+..|+|+|||.+|-. ...+..+.
T Consensus 189 ~~~~~~~~~cvyGG~~~-~~Q~~~l~----~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~I 263 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPK-GPQLRDLE----RGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKI 263 (519)
T ss_pred cCCCCccEEEEeCCCCc-cHHHHHHh----cCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHH
Confidence 76543 455555543 33333322 578999999999877543 24444788999999999965 34566677
Q ss_pred HHcc-ccce-EEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhh
Q 001197 553 ISGY-QIQR-RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 630 (1125)
Q Consensus 553 L~~l-~s~~-RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pfl 630 (1125)
+..+ .+.. .++-|+|= +. .
T Consensus 264 l~~i~~~~rQtlm~saTw--------------------p~---~------------------------------------ 284 (519)
T KOG0331|consen 264 LSQIPRPDRQTLMFSATW--------------------PK---E------------------------------------ 284 (519)
T ss_pred HHhcCCCcccEEEEeeec--------------------cH---H------------------------------------
Confidence 7666 3333 56666661 00 0
Q ss_pred hhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHH
Q 001197 631 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKE 710 (1125)
Q Consensus 631 LRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~ 710 (1125)
+|.+..++.. .|-.+ .+... +.......+.|+-..|+
T Consensus 285 v~~lA~~fl~-~~~~i-~ig~~--------------------------~~~~a~~~i~qive~~~--------------- 321 (519)
T KOG0331|consen 285 VRQLAEDFLN-NPIQI-NVGNK--------------------------KELKANHNIRQIVEVCD--------------- 321 (519)
T ss_pred HHHHHHHHhc-CceEE-Eecch--------------------------hhhhhhcchhhhhhhcC---------------
Confidence 0011111111 11110 00000 00000011112222222
Q ss_pred HHHhhcchHHHHHHHhHHhh-hCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEE
Q 001197 711 EIIRASGKFELLDRLLPKLR-KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMF 789 (1125)
Q Consensus 711 ~li~~S~Kle~L~~lL~kl~-~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~Vf 789 (1125)
...|...|..+|.... ..+.||||||......+.|+..|...+++.+-|||..++.+|..+|+.|.+++.+ +
T Consensus 322 ----~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~---v 394 (519)
T KOG0331|consen 322 ----ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSP---V 394 (519)
T ss_pred ----HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcc---e
Confidence 3457788888888876 4567999999999999999999999999999999999999999999999998887 7
Q ss_pred EeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCc
Q 001197 790 LLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 835 (1125)
Q Consensus 790 LLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~ 835 (1125)
|++|+.++.||++...++||+||+|-|...|+||+||.+|-|++-.
T Consensus 395 LVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~ 440 (519)
T KOG0331|consen 395 LVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGT 440 (519)
T ss_pred EEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCce
Confidence 9999999999999999999999999999999999999999877643
No 44
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.89 E-value=4.3e-21 Score=237.25 Aligned_cols=304 Identities=18% Similarity=0.251 Sum_probs=203.3
Q ss_pred CCccHHHHHHHHHHHHhhcc--CCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCC-
Q 001197 406 GELRAYQLEGLQWMLSLFNN--NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP- 481 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~--~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p- 481 (1125)
.+|.++|.+++..++..... ..+.+|..++|+|||+.++..+...... ...+||++|+ .+..||..+|.+|++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 47999999999998875432 3467999999999999987666555543 3478999999 667999999999986
Q ss_pred -CceEEEEcCChhH--HHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHccc-
Q 001197 482 -SIAAVVYDGRPDE--RKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ- 557 (1125)
Q Consensus 482 -~~~vivy~G~~~~--R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l~- 557 (1125)
++.+.+++|+... +......+.. +.++|||+|+..+.... .-.+..+|||||+|++.-. ..........
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~~i~~--g~~~IiVgT~~ll~~~~---~~~~l~lvVIDEaH~fg~~--qr~~l~~~~~~ 383 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLETIAS--GQIHLVVGTHALIQEKV---EFKRLALVIIDEQHRFGVE--QRKKLREKGQG 383 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHHHHhC--CCCCEEEecHHHHhccc---cccccceEEEechhhccHH--HHHHHHHhccc
Confidence 4788888776432 3333333322 67899999999876432 1235679999999997432 1111222222
Q ss_pred --cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhH
Q 001197 558 --IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 635 (1125)
Q Consensus 558 --s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K 635 (1125)
..+.+++||||+...+. +..+ +.. . .
T Consensus 384 ~~~~~~l~~SATp~prtl~----l~~~------~~l-----------------~------------------~------- 411 (630)
T TIGR00643 384 GFTPHVLVMSATPIPRTLA----LTVY------GDL-----------------D------------------T------- 411 (630)
T ss_pred CCCCCEEEEeCCCCcHHHH----HHhc------CCc-----------------c------------------e-------
Confidence 57899999999763321 1100 000 0 0
Q ss_pred HHHhhhCCCCe--EEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHH
Q 001197 636 DEVEKYLPGKS--QVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 713 (1125)
Q Consensus 636 ~dV~~~LP~k~--e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li 713 (1125)
.+...+|+.. .....+.-+
T Consensus 412 -~~i~~~p~~r~~i~~~~~~~~---------------------------------------------------------- 432 (630)
T TIGR00643 412 -SIIDELPPGRKPITTVLIKHD---------------------------------------------------------- 432 (630)
T ss_pred -eeeccCCCCCCceEEEEeCcc----------------------------------------------------------
Confidence 0001122110 000000000
Q ss_pred hhcchHHHHHHHhHHhhhCCCEEEEEeccch--------HHHHHHHHHHh--CCCeEEEecCCCCHHHHHHHHHHHcCCC
Q 001197 714 RASGKFELLDRLLPKLRKSGHRVLLFSQMTR--------LMDILEIYLKL--NDFKFLRLDGSTKTEERGTLLKQFNAPD 783 (1125)
Q Consensus 714 ~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~--------~ldiLe~~L~~--~gi~~~rLdGsts~~eR~~~I~~Fn~~d 783 (1125)
....+...+.+....|++++|||.... ....+...|.. .++.+..+||.++.++|..++++|.++.
T Consensus 433 ----~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~ 508 (630)
T TIGR00643 433 ----EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGE 508 (630)
T ss_pred ----hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 001112222222345788999987642 23334444442 5788999999999999999999999987
Q ss_pred CCceEEEeeccccccccCCCCCCEEEEeCCCC-ChhhHHHHHhhhcccCCCCcEE
Q 001197 784 SPYFMFLLSTRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKKEVR 837 (1125)
Q Consensus 784 s~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~W-NP~~d~QAigRahRIGQkk~V~ 837 (1125)
.+ +|+||.+.++|+|++.+++||++|++. +-..+.|+.||++|-|..-.|.
T Consensus 509 ~~---ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 509 VD---ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred CC---EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 66 799999999999999999999999985 6788999999999998765544
No 45
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.88 E-value=4e-21 Score=244.75 Aligned_cols=324 Identities=19% Similarity=0.188 Sum_probs=203.9
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHH-HHHHHcc-----CCCCCEEEEcCc-ccHHHHHHH---
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALI-AYLLENK-----GVTGPHVIVAPK-AVLPNWINE--- 475 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali-~~L~e~~-----~~~gp~LIVvP~-sll~qW~~E--- 475 (1125)
..|+|+|.+++..++. +.++|++.+||+|||+.++..+ ..+.... .....+|+|+|+ .|..++...
T Consensus 31 ~~~tpiQ~~Ai~~il~----g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLIHE----GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3699999999987654 7899999999999999986544 3444321 112248999999 666666553
Q ss_pred ----HHhhC-------CCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH------HhhhccCeeEEEEcC
Q 001197 476 ----FSTWA-------PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR------QYLKKVQWIYMIVDE 538 (1125)
Q Consensus 476 ----f~k~~-------p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~------~~L~ki~w~~VIIDE 538 (1125)
+..++ +.+.+.+++|......... ... ..++|+|||++.+.... ..|. ...+|||||
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~--~l~--~~p~IlVtTPE~L~~ll~~~~~~~~l~--~l~~VVIDE 180 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQK--MLK--KPPHILITTPESLAILLNSPKFREKLR--TVKWVIVDE 180 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHH--HHh--CCCCEEEecHHHHHHHhcChhHHHHHh--cCCEEEEec
Confidence 33332 4678888888754432211 111 46899999999885321 1222 457899999
Q ss_pred CcccCCh--hhHHHHHHH---cc--ccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCC
Q 001197 539 GHRLKNH--ECALAKTIS---GY--QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALT 611 (1125)
Q Consensus 539 AHriKN~--~SklskaL~---~l--~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~ 611 (1125)
+|.+.+. ...+...+. .+ ....+++||||. .++.++-. |+...... ..+
T Consensus 181 ~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~---~L~~~~~~---------~~~---------- 236 (876)
T PRK13767 181 IHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAK---FLVGYEDD---------GEP---------- 236 (876)
T ss_pred hhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHH---HhcCcccc---------CCC----------
Confidence 9999753 222333332 22 345789999996 23333322 22111000 000
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHH
Q 001197 612 DEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLR 691 (1125)
Q Consensus 612 ~ee~~~~i~rL~~vL~pflLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLR 691 (1125)
++..+ +...........+.++....
T Consensus 237 ---------------r~~~i------v~~~~~k~~~i~v~~p~~~l---------------------------------- 261 (876)
T PRK13767 237 ---------------RDCEI------VDARFVKPFDIKVISPVDDL---------------------------------- 261 (876)
T ss_pred ---------------CceEE------EccCCCccceEEEeccCccc----------------------------------
Confidence 00000 00000000001111110000
Q ss_pred HhhCCCcccccccchhhHHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHh------CCCeEEEecC
Q 001197 692 KCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL------NDFKFLRLDG 765 (1125)
Q Consensus 692 kicnhP~L~~~~~~~~~~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~------~gi~~~rLdG 765 (1125)
.... .......+...|..+...++++||||+.....+.+...|.. .+..+..+||
T Consensus 262 --------~~~~-----------~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg 322 (876)
T PRK13767 262 --------IHTP-----------AEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHS 322 (876)
T ss_pred --------cccc-----------cchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeC
Confidence 0000 00001112233333444578999999999999999888875 2467899999
Q ss_pred CCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhccc-CCCCcEEEEE
Q 001197 766 STKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRI-GQKKEVRVFV 840 (1125)
Q Consensus 766 sts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRI-GQkk~V~Vyr 840 (1125)
+++.++|..+.+.|+++... +|+||.+.++|||+..+|.||+|++|.++..++|++||++|- |......|+-
T Consensus 323 ~ls~~~R~~ve~~fk~G~i~---vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 323 SLSREVRLEVEEKLKRGELK---VVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred CCCHHHHHHHHHHHHcCCCe---EEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 99999999999999998765 699999999999999999999999999999999999999976 4555555554
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.88 E-value=1.4e-20 Score=234.48 Aligned_cols=306 Identities=18% Similarity=0.222 Sum_probs=204.6
Q ss_pred CCccHHHHHHHHHHHHhhcc--CCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCC
Q 001197 406 GELRAYQLEGLQWMLSLFNN--NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS 482 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~--~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~ 482 (1125)
.+|.++|.+++..+..-... ..+.+|..++|+|||+.++..+...... ...+||++|+ .|..|+...|.+|++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA~Q~~~~l~~l~~~ 336 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILAEQHYENLKKLLEP 336 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 47999999999988875432 2467999999999999987666544443 3468999999 7788999999999865
Q ss_pred --ceEEEEcCChh--HHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHc-cc
Q 001197 483 --IAAVVYDGRPD--ERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG-YQ 557 (1125)
Q Consensus 483 --~~vivy~G~~~--~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~-l~ 557 (1125)
+.+.+++|... .+......+.. +..+|+|+|+..+.... .+ .+..+|||||+|++.- .....+.. ..
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~~~l~~--g~~~IvVgT~~ll~~~v-~~--~~l~lvVIDE~Hrfg~---~qr~~l~~~~~ 408 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREILEAIAS--GEADIVIGTHALIQDDV-EF--HNLGLVIIDEQHRFGV---EQRLALREKGE 408 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHHHHHhC--CCCCEEEchHHHhcccc-hh--cccceEEEechhhhhH---HHHHHHHhcCC
Confidence 77788888654 33333333333 67999999998875422 12 2567899999999832 22333322 23
Q ss_pred cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHHH
Q 001197 558 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 637 (1125)
Q Consensus 558 s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~d 637 (1125)
..+.+++||||+...+. +..+- . +.+.
T Consensus 409 ~~~iL~~SATp~prtl~----~~~~g------~-----------------------------------~~~s-------- 435 (681)
T PRK10917 409 NPHVLVMTATPIPRTLA----MTAYG------D-----------------------------------LDVS-------- 435 (681)
T ss_pred CCCEEEEeCCCCHHHHH----HHHcC------C-----------------------------------CceE--------
Confidence 57899999999643211 11000 0 0000
Q ss_pred HhhhCCCCe--EEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhh
Q 001197 638 VEKYLPGKS--QVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 715 (1125)
Q Consensus 638 V~~~LP~k~--e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~ 715 (1125)
+...+|+.. .....+.
T Consensus 436 ~i~~~p~~r~~i~~~~~~-------------------------------------------------------------- 453 (681)
T PRK10917 436 VIDELPPGRKPITTVVIP-------------------------------------------------------------- 453 (681)
T ss_pred EEecCCCCCCCcEEEEeC--------------------------------------------------------------
Confidence 000122110 0000000
Q ss_pred cchHHHHHHHhHHhhhCCCEEEEEeccch--------HHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHHcCCCCC
Q 001197 716 SGKFELLDRLLPKLRKSGHRVLLFSQMTR--------LMDILEIYLKLN--DFKFLRLDGSTKTEERGTLLKQFNAPDSP 785 (1125)
Q Consensus 716 S~Kle~L~~lL~kl~~~g~KVLIFsq~t~--------~ldiLe~~L~~~--gi~~~rLdGsts~~eR~~~I~~Fn~~ds~ 785 (1125)
..+...+.+.+......|++++|||.... ....+.+.|... ++++..+||.++..+|..++++|.++..+
T Consensus 454 ~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ 533 (681)
T PRK10917 454 DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEID 533 (681)
T ss_pred cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC
Confidence 00011122222223357889999998542 223344555433 57899999999999999999999998766
Q ss_pred ceEEEeeccccccccCCCCCCEEEEeCCCC-ChhhHHHHHhhhcccCCCCcEEEEEEE
Q 001197 786 YFMFLLSTRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKKEVRVFVLV 842 (1125)
Q Consensus 786 ~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~W-NP~~d~QAigRahRIGQkk~V~VyrLI 842 (1125)
+|+||.+.++|+|++.+++||++|++. ....+.|+.||++|-|... .+|.+.
T Consensus 534 ---ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g--~~ill~ 586 (681)
T PRK10917 534 ---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQS--YCVLLY 586 (681)
T ss_pred ---EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCce--EEEEEE
Confidence 799999999999999999999999985 5788999999999998654 444444
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.88 E-value=1.2e-20 Score=238.76 Aligned_cols=307 Identities=17% Similarity=0.221 Sum_probs=209.2
Q ss_pred CCCccHHHHHHHHHHHHhhccC--CCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCC
Q 001197 405 GGELRAYQLEGLQWMLSLFNNN--LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP 481 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~~--~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p 481 (1125)
+.+|.|+|..++..++.-...+ .+.+++.++|+|||..++..+......+ ..++|+||+ .|..|+...|.++++
T Consensus 449 ~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT~~LA~Q~~~~f~~~~~ 525 (926)
T TIGR00580 449 PFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPTTLLAQQHFETFKERFA 525 (926)
T ss_pred CCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCcHHHHHHHHHHHHHHhc
Confidence 4689999999999988754432 4679999999999998876554444332 468999999 677889999998875
Q ss_pred C--ceEEEEcCCh--hHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHcc-
Q 001197 482 S--IAAVVYDGRP--DERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY- 556 (1125)
Q Consensus 482 ~--~~vivy~G~~--~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l- 556 (1125)
. +++.+++|.. .+++.....+.. +..+|||+|+..+.++. .-.+..+|||||+|++.- .....+..+
T Consensus 526 ~~~i~v~~Lsg~~~~~e~~~~~~~l~~--g~~dIVIGTp~ll~~~v---~f~~L~llVIDEahrfgv---~~~~~L~~~~ 597 (926)
T TIGR00580 526 NFPVTIELLSRFRSAKEQNEILKELAS--GKIDILIGTHKLLQKDV---KFKDLGLLIIDEEQRFGV---KQKEKLKELR 597 (926)
T ss_pred cCCcEEEEEeccccHHHHHHHHHHHHc--CCceEEEchHHHhhCCC---CcccCCEEEeecccccch---hHHHHHHhcC
Confidence 4 4555565542 234444433333 67899999997664321 122567999999999743 333445444
Q ss_pred ccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHH
Q 001197 557 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 636 (1125)
Q Consensus 557 ~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~ 636 (1125)
.....+++||||+...+... +.....+..+.
T Consensus 598 ~~~~vL~~SATpiprtl~~~--l~g~~d~s~I~----------------------------------------------- 628 (926)
T TIGR00580 598 TSVDVLTLSATPIPRTLHMS--MSGIRDLSIIA----------------------------------------------- 628 (926)
T ss_pred CCCCEEEEecCCCHHHHHHH--HhcCCCcEEEe-----------------------------------------------
Confidence 45678999999975432211 10000000000
Q ss_pred HHhhhCCCCeEE---EEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHH
Q 001197 637 EVEKYLPGKSQV---ILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 713 (1125)
Q Consensus 637 dV~~~LP~k~e~---vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li 713 (1125)
.|+.... ...++.+.
T Consensus 629 -----~~p~~R~~V~t~v~~~~~--------------------------------------------------------- 646 (926)
T TIGR00580 629 -----TPPEDRLPVRTFVMEYDP--------------------------------------------------------- 646 (926)
T ss_pred -----cCCCCccceEEEEEecCH---------------------------------------------------------
Confidence 0110000 00000000
Q ss_pred hhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHh--CCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEe
Q 001197 714 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL--NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 791 (1125)
Q Consensus 714 ~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~--~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLL 791 (1125)
......++..+ ..|.+++|||+....++.+...|.. .++++..+||.|+..+|..++.+|..+..+ +|+
T Consensus 647 -----~~i~~~i~~el-~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~---ILV 717 (926)
T TIGR00580 647 -----ELVREAIRREL-LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQ---VLV 717 (926)
T ss_pred -----HHHHHHHHHHH-HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCC---EEE
Confidence 00000111112 3478999999999999999999986 488999999999999999999999998876 799
Q ss_pred eccccccccCCCCCCEEEEeCCCC-ChhhHHHHHhhhcccCCCCcEEEEEEEeC
Q 001197 792 STRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKKEVRVFVLVSV 844 (1125)
Q Consensus 792 STrAGG~GLNLq~Ad~VIi~D~~W-NP~~d~QAigRahRIGQkk~V~VyrLIt~ 844 (1125)
||.+.+.|||++.+++||+++++. ....+.|+.||++|-|.+ -.+|-|+..
T Consensus 718 aT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~ 769 (926)
T TIGR00580 718 CTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPH 769 (926)
T ss_pred ECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECC
Confidence 999999999999999999999964 567889999999998864 455555544
No 48
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.5e-20 Score=225.00 Aligned_cols=332 Identities=21% Similarity=0.284 Sum_probs=225.8
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHc-cCCCC-CEEEEcCc-ccHHHHHHHHHhhCC-
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN-KGVTG-PHVIVAPK-AVLPNWINEFSTWAP- 481 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~-~~~~g-p~LIVvP~-sll~qW~~Ef~k~~p- 481 (1125)
..+.|.|..++--++. +.+.|....+|+|||..-+.-+...+.. ..... +.||++|+ -|..|-.+++.++..
T Consensus 50 ~~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 50 EEPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh
Confidence 3788999999987775 6788889999999998765444443432 22222 38999999 667778888887754
Q ss_pred --CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHH--hhhccCeeEEEEcCCcccCChh--hHHHHHHHc
Q 001197 482 --SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHE--CALAKTISG 555 (1125)
Q Consensus 482 --~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~--~L~ki~w~~VIIDEAHriKN~~--SklskaL~~ 555 (1125)
.+.++++.|........ ..+. ...+|||.|+.-+..... .+...+..++|+|||.+|-+.. ..+...+..
T Consensus 126 ~~~~~~~~i~GG~~~~~q~-~~l~---~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~ 201 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQI-EALK---RGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKA 201 (513)
T ss_pred cCCccEEEEECCCCHHHHH-HHHh---cCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHh
Confidence 45656655554444443 2222 249999999999885432 3444567799999999998763 345555555
Q ss_pred ccc-ceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhh
Q 001197 556 YQI-QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 634 (1125)
Q Consensus 556 l~s-~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~ 634 (1125)
++. ...++.|||.-. .+. .+..-.+ . .|..+..-
T Consensus 202 ~p~~~qtllfSAT~~~-~i~---~l~~~~l--------------~---------------------------~p~~i~v~ 236 (513)
T COG0513 202 LPPDRQTLLFSATMPD-DIR---ELARRYL--------------N---------------------------DPVEIEVS 236 (513)
T ss_pred CCcccEEEEEecCCCH-HHH---HHHHHHc--------------c---------------------------CCcEEEEc
Confidence 544 566888999522 111 1111000 0 01000000
Q ss_pred HHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHh
Q 001197 635 KDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIR 714 (1125)
Q Consensus 635 K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~ 714 (1125)
........+.-....+.|.-
T Consensus 237 ~~~~~~~~~~i~q~~~~v~~------------------------------------------------------------ 256 (513)
T COG0513 237 VEKLERTLKKIKQFYLEVES------------------------------------------------------------ 256 (513)
T ss_pred cccccccccCceEEEEEeCC------------------------------------------------------------
Confidence 00000000111111111110
Q ss_pred hcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecc
Q 001197 715 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 794 (1125)
Q Consensus 715 ~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTr 794 (1125)
...|+.+|..++..... .++||||......+.|...|...|+++..|||++++.+|...++.|+++... +|++|+
T Consensus 257 ~~~k~~~L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~---vLVaTD 331 (513)
T COG0513 257 EEEKLELLLKLLKDEDE--GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELR---VLVATD 331 (513)
T ss_pred HHHHHHHHHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCC---EEEEec
Confidence 01477777777765432 3799999999999999999999999999999999999999999999988776 699999
Q ss_pred ccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHH
Q 001197 795 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQK 858 (1125)
Q Consensus 795 AGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~r~~~K 858 (1125)
++++||++...++||+||+|.++..|+|++||++|.| +.-..+.|++. .-|...+..+...
T Consensus 332 vaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG--~~G~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 332 VAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAG--RKGVAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred hhhccCCccccceeEEccCCCCHHHheeccCccccCC--CCCeEEEEeCc-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 44466667766 2255555554443
No 49
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.87 E-value=9.2e-21 Score=243.76 Aligned_cols=357 Identities=18% Similarity=0.218 Sum_probs=211.0
Q ss_pred CCCccHHHHHHHHHHHHhhcc-CCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCC
Q 001197 405 GGELRAYQLEGLQWMLSLFNN-NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS 482 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~-~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~ 482 (1125)
+..|||||.+++..+...+.+ +.+++|++.+|+|||+++++++..++.... .+++|||||. .|+.||..+|..+.+.
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~-~~rVLfLvDR~~L~~Qa~~~F~~~~~~ 489 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKR-FRRILFLVDRSALGEQAEDAFKDTKIE 489 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCc-cCeEEEEecHHHHHHHHHHHHHhcccc
Confidence 357999999999888766543 467899999999999999999988876543 4589999997 8899999999987532
Q ss_pred ce-EE--EEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHH-------hhhccCeeEEEEcCCcccCCh-------
Q 001197 483 IA-AV--VYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ-------YLKKVQWIYMIVDEGHRLKNH------- 545 (1125)
Q Consensus 483 ~~-vi--vy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~-------~L~ki~w~~VIIDEAHriKN~------- 545 (1125)
.. .+ +|.. . .+..... .....|+|+||.++.+... .+..-.|++||||||||....
T Consensus 490 ~~~~~~~i~~i-~----~L~~~~~--~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 490 GDQTFASIYDI-K----GLEDKFP--EDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred cccchhhhhch-h----hhhhhcc--cCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 21 11 1211 1 1111111 1456899999999876421 123347899999999996310
Q ss_pred ----------hhHHHHHHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHH
Q 001197 546 ----------ECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQ 615 (1125)
Q Consensus 546 ----------~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~ 615 (1125)
.++..+.+..+. ..+|+|||||..+. + ..|+.|... ++-.+.
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t----~------------------~~FG~pv~~-----Ysl~eA 614 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT----T------------------EIFGEPVYT-----YSYREA 614 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhcC-ccEEEEecCCccch----h------------------HHhCCeeEE-----eeHHHH
Confidence 134444555554 58899999997432 1 112222110 000000
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHhhhCCCCeEEEEE----ecCC-HHHHHHHHHHHhhcc-cccccCCCccchHHHHHHH
Q 001197 616 LLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILK----CDMS-AWQKVYYQQVTDVGR-VGLDTGTGKSKSLQNLSMQ 689 (1125)
Q Consensus 616 ~~~i~rL~~vL~pflLRR~K~dV~~~LP~k~e~vi~----~~ms-~~Q~~lY~~i~~~~~-~~l~~~~~k~~~l~n~~~q 689 (1125)
+-..+++. ..||....... +..+ ..+...|+....... ..+. ..+......
T Consensus 615 ---------I~DG~Lv~--------~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~------d~~~~~~~~ 671 (1123)
T PRK11448 615 ---------VIDGYLID--------HEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLE------DEVDFEVED 671 (1123)
T ss_pred ---------HhcCCccc--------CcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCc------HHHhhhHHH
Confidence 00111110 01222211100 0000 011111211100000 0000 000000000
Q ss_pred HHHhhCCCcccccccchhhHHHHHhhcchHH-HHHHHhHHhhh-CCCEEEEEeccchHHHHHHHHHHhC------CC---
Q 001197 690 LRKCCNHPYLFVGEYNMWRKEEIIRASGKFE-LLDRLLPKLRK-SGHRVLLFSQMTRLMDILEIYLKLN------DF--- 758 (1125)
Q Consensus 690 LRkicnhP~L~~~~~~~~~~~~li~~S~Kle-~L~~lL~kl~~-~g~KVLIFsq~t~~ldiLe~~L~~~------gi--- 758 (1125)
+-+ .++ ...... .+..++..+.. .+.|+||||.....++.|.+.|... ++
T Consensus 672 ~~~------------------~vi-~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~ 732 (1123)
T PRK11448 672 FNR------------------RVI-TESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDD 732 (1123)
T ss_pred HHH------------------HHh-hHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCcc
Confidence 000 000 000111 12222222221 2479999999999988877776531 22
Q ss_pred eEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCC---CCc
Q 001197 759 KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQ---KKE 835 (1125)
Q Consensus 759 ~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQ---kk~ 835 (1125)
.+..++|+++ ++..++++|.++..+ .+++|++..++|+|++.+++||+++|+-++..+.|++||+.|..- |..
T Consensus 733 ~v~~itg~~~--~~~~li~~Fk~~~~p--~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~ 808 (1123)
T PRK11448 733 AVIKITGSID--KPDQLIRRFKNERLP--NIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTH 808 (1123)
T ss_pred ceEEEeCCcc--chHHHHHHHhCCCCC--eEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCce
Confidence 4567999886 578899999885543 579999999999999999999999999999999999999999864 555
Q ss_pred EEEEEEEe
Q 001197 836 VRVFVLVS 843 (1125)
Q Consensus 836 V~VyrLIt 843 (1125)
+.||.++.
T Consensus 809 f~I~D~vg 816 (1123)
T PRK11448 809 FRIFDAVD 816 (1123)
T ss_pred EEEEehHH
Confidence 88888763
No 50
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=8.2e-21 Score=210.77 Aligned_cols=318 Identities=22% Similarity=0.294 Sum_probs=228.3
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHH-HHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCC--C
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 482 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaI-ali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p--~ 482 (1125)
.+-+-|.+++-.++. +..+|.+.|+|+|||...+ -++..|+... ..--.||++|. -+..|-...|+.... +
T Consensus 83 ~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p-~~~~~lVLtPtRELA~QI~e~fe~Lg~~ig 157 (476)
T KOG0330|consen 83 KPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEP-KLFFALVLTPTRELAQQIAEQFEALGSGIG 157 (476)
T ss_pred CCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCC-CCceEEEecCcHHHHHHHHHHHHHhccccC
Confidence 677889999977764 8888999999999998864 4445566643 23346999999 555667777888754 4
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHh---hhccCeeEEEEcCCcccCChh--hHHHHHHHccc
Q 001197 483 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKKVQWIYMIVDEGHRLKNHE--CALAKTISGYQ 557 (1125)
Q Consensus 483 ~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~---L~ki~w~~VIIDEAHriKN~~--SklskaL~~l~ 557 (1125)
+.+.+..|..+......... .+++|+|.|+..+.+.... +.--...++|+|||.++-|.. -.+.+.|+.++
T Consensus 158 lr~~~lvGG~~m~~q~~~L~----kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip 233 (476)
T KOG0330|consen 158 LRVAVLVGGMDMMLQANQLS----KKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP 233 (476)
T ss_pred eEEEEEecCchHHHHHHHhh----cCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC
Confidence 67777777766554443333 6789999999999876542 222345689999999998864 46778888886
Q ss_pred cceE-EEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHH
Q 001197 558 IQRR-LLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 636 (1125)
Q Consensus 558 s~~R-LlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~ 636 (1125)
..++ ++.|||- ..+...|.. - .+
T Consensus 234 ~erqt~LfsATM-t~kv~kL~r-------------------------------------------------a-sl----- 257 (476)
T KOG0330|consen 234 RERQTFLFSATM-TKKVRKLQR-------------------------------------------------A-SL----- 257 (476)
T ss_pred ccceEEEEEeec-chhhHHHHh-------------------------------------------------h-cc-----
Confidence 5544 6678874 222222210 0 00
Q ss_pred HHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhc
Q 001197 637 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 716 (1125)
Q Consensus 637 dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S 716 (1125)
.-| +.|.-+ ..|..+. .|.+ -|+|.. ..
T Consensus 258 ----~~p------~~v~~s----~ky~tv~----------------------~lkQ----~ylfv~------------~k 285 (476)
T KOG0330|consen 258 ----DNP------VKVAVS----SKYQTVD----------------------HLKQ----TYLFVP------------GK 285 (476)
T ss_pred ----CCC------eEEecc----chhcchH----------------------Hhhh----heEecc------------cc
Confidence 001 011100 1111111 1111 122221 12
Q ss_pred chHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecccc
Q 001197 717 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 796 (1125)
Q Consensus 717 ~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAG 796 (1125)
-|-..|..+|.++ .|..+||||......+.+.-+|...|+....++|.|+...|..+++.|+++..+ +|++|+.|
T Consensus 286 ~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~---iLv~TDVa 360 (476)
T KOG0330|consen 286 DKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS---ILVCTDVA 360 (476)
T ss_pred ccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCc---EEEecchh
Confidence 2445677777754 468899999999999999999999999999999999999999999999997766 79999999
Q ss_pred ccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHH
Q 001197 797 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIE 848 (1125)
Q Consensus 797 G~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIE 848 (1125)
+.||+++.+|.||+||-|-+...|++|.||+.|.| +.-.+..||+..-||
T Consensus 361 SRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 361 SRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE 410 (476)
T ss_pred cccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH
Confidence 99999999999999999999999999999999999 667788889874333
No 51
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.87 E-value=4.2e-20 Score=231.36 Aligned_cols=331 Identities=18% Similarity=0.203 Sum_probs=215.8
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhC-CCce
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA-PSIA 484 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~-p~~~ 484 (1125)
+|+|+|.+++..++. +.+.|++.+||+|||+..+..+...+... .....|||+|+ .|..|-..++..+. .+++
T Consensus 36 ~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~~-~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~ 110 (742)
T TIGR03817 36 RPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALADD-PRATALYLAPTKALAADQLRAVRELTLRGVR 110 (742)
T ss_pred cCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhhC-CCcEEEEEcChHHHHHHHHHHHHHhccCCeE
Confidence 799999999987764 88899999999999998865544433322 23468999999 67778888888876 3577
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH--------HhhhccCeeEEEEcCCcccCC-hhhHHHHHHHc
Q 001197 485 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--------QYLKKVQWIYMIVDEGHRLKN-HECALAKTISG 555 (1125)
Q Consensus 485 vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~--------~~L~ki~w~~VIIDEAHriKN-~~SklskaL~~ 555 (1125)
+.+|.|....... ..+ . ...+|||||++.+.... ..|. +..+|||||+|.+.+ ..+.+...+.+
T Consensus 111 v~~~~Gdt~~~~r--~~i-~--~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l~~vViDEah~~~g~fg~~~~~il~r 183 (742)
T TIGR03817 111 PATYDGDTPTEER--RWA-R--EHARYVLTNPDMLHRGILPSHARWARFLR--RLRYVVIDECHSYRGVFGSHVALVLRR 183 (742)
T ss_pred EEEEeCCCCHHHH--HHH-h--cCCCEEEEChHHHHHhhccchhHHHHHHh--cCCEEEEeChhhccCccHHHHHHHHHH
Confidence 8888887543221 111 1 35799999999885321 1222 457999999999965 23333333333
Q ss_pred c--------ccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhh
Q 001197 556 Y--------QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIR 627 (1125)
Q Consensus 556 l--------~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~ 627 (1125)
+ .....+++|||. ++..++.. .+ +..++... .
T Consensus 184 L~ri~~~~g~~~q~i~~SATi--~n~~~~~~---~l--------------~g~~~~~i---~------------------ 223 (742)
T TIGR03817 184 LRRLCARYGASPVFVLASATT--ADPAAAAS---RL--------------IGAPVVAV---T------------------ 223 (742)
T ss_pred HHHHHHhcCCCCEEEEEecCC--CCHHHHHH---HH--------------cCCCeEEE---C------------------
Confidence 2 224678999994 22333211 11 11110000 0
Q ss_pred hhhhhhhHHHHhhhCCCC-eEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccch
Q 001197 628 PFILRRKKDEVEKYLPGK-SQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNM 706 (1125)
Q Consensus 628 pflLRR~K~dV~~~LP~k-~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~ 706 (1125)
.+.-|.. ....++.+. . +. .....+.. .++ .
T Consensus 224 -----------~~~~~~~~~~~~~~~p~-~-----~~---------~~~~~~~~---------~r~------------~- 255 (742)
T TIGR03817 224 -----------EDGSPRGARTVALWEPP-L-----TE---------LTGENGAP---------VRR------------S- 255 (742)
T ss_pred -----------CCCCCcCceEEEEecCC-c-----cc---------cccccccc---------ccc------------c-
Confidence 0001111 111111110 0 00 00000000 000 0
Q ss_pred hhHHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhC--------CCeEEEecCCCCHHHHHHHHHH
Q 001197 707 WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN--------DFKFLRLDGSTKTEERGTLLKQ 778 (1125)
Q Consensus 707 ~~~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~--------gi~~~rLdGsts~~eR~~~I~~ 778 (1125)
....+..+|..++ ..+.++||||+.....+.+..+|... +..+..++|+++.++|..+.++
T Consensus 256 -------~~~~~~~~l~~l~----~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 256 -------ASAEAADLLADLV----AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred -------hHHHHHHHHHHHH----HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 0012333444444 35789999999999999998887643 5678889999999999999999
Q ss_pred HcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHH
Q 001197 779 FNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILE 853 (1125)
Q Consensus 779 Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~ 853 (1125)
|.++... +|+||+++++|||+...|+||+||.|-++..+.|++||++|.|+... ++.+++.+..|..++.
T Consensus 325 f~~G~i~---vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 325 LRDGELL---GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLVH 394 (742)
T ss_pred HHcCCce---EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHHh
Confidence 9997765 69999999999999999999999999999999999999999997643 4556666777776554
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.87 E-value=2.6e-20 Score=240.41 Aligned_cols=303 Identities=19% Similarity=0.245 Sum_probs=203.6
Q ss_pred CCccHHHHHHHHHHHHhhcc--CCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCC
Q 001197 406 GELRAYQLEGLQWMLSLFNN--NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS 482 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~--~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~ 482 (1125)
.++.|.|.+++.-++.-... ..+.+++.+||+|||.+++.++...... ...+||+||+ .+..|....|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 58999999999887774332 2567999999999999886444333332 3579999999 5568888888876643
Q ss_pred --ceEEEEcC--ChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHcc-c
Q 001197 483 --IAAVVYDG--RPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-Q 557 (1125)
Q Consensus 483 --~~vivy~G--~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l-~ 557 (1125)
+.+.++.| +..++......+.. +..+|||+|++.+.++. .-.++.+|||||+|++.. .....++.+ .
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~~l~~--g~~dIVVgTp~lL~~~v---~~~~L~lLVIDEahrfG~---~~~e~lk~l~~ 747 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILAEAAE--GKIDILIGTHKLLQSDV---KWKDLGLLIVDEEHRFGV---RHKERIKAMRA 747 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHh--CCCCEEEECHHHHhCCC---CHhhCCEEEEechhhcch---hHHHHHHhcCC
Confidence 45545544 33344333333322 67899999998775432 223678999999999843 223445444 4
Q ss_pred cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHHH
Q 001197 558 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 637 (1125)
Q Consensus 558 s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~d 637 (1125)
....+++||||++..+.-. +..+.+|.. +
T Consensus 748 ~~qvLl~SATpiprtl~l~--~~gl~d~~~-------------------------------------------I------ 776 (1147)
T PRK10689 748 DVDILTLTATPIPRTLNMA--MSGMRDLSI-------------------------------------------I------ 776 (1147)
T ss_pred CCcEEEEcCCCCHHHHHHH--HhhCCCcEE-------------------------------------------E------
Confidence 5688999999976543211 000001100 0
Q ss_pred HhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhcc
Q 001197 638 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 717 (1125)
Q Consensus 638 V~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S~ 717 (1125)
..|+.....+. .. + ..+.
T Consensus 777 ---~~~p~~r~~v~----------------------------------------~~-----~--~~~~------------ 794 (1147)
T PRK10689 777 ---ATPPARRLAVK----------------------------------------TF-----V--REYD------------ 794 (1147)
T ss_pred ---ecCCCCCCCce----------------------------------------EE-----E--EecC------------
Confidence 00110000000 00 0 0000
Q ss_pred hHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccc
Q 001197 718 KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 795 (1125)
Q Consensus 718 Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~--gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrA 795 (1125)
.......++..+. .+.+|+|||+....++.+...|... ++.+..+||.|+..+|..++.+|.++..+ +|+||.+
T Consensus 795 ~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~---VLVaTdI 870 (1147)
T PRK10689 795 SLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VLVCTTI 870 (1147)
T ss_pred cHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCC---EEEECch
Confidence 0001122233332 4678999999999999999999765 78999999999999999999999998876 6999999
Q ss_pred cccccCCCCCCEEEEeCCC-CChhhHHHHHhhhcccCCCCcE
Q 001197 796 GGLGLNLQTADTVIIFDSD-WNPQMDQQAEDRAHRIGQKKEV 836 (1125)
Q Consensus 796 GG~GLNLq~Ad~VIi~D~~-WNP~~d~QAigRahRIGQkk~V 836 (1125)
.+.|||++.+++||+.+++ ++..++.|+.||++|.|.+-.+
T Consensus 871 ierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a 912 (1147)
T PRK10689 871 IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 (1147)
T ss_pred hhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEE
Confidence 9999999999999998876 6778899999999999876533
No 53
>PRK02362 ski2-like helicase; Provisional
Probab=99.85 E-value=1.4e-19 Score=227.94 Aligned_cols=319 Identities=19% Similarity=0.175 Sum_probs=202.4
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCC-Cce
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-SIA 484 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p-~~~ 484 (1125)
+|+|+|.+++.-+ +..+.|.|++.++|+|||+.+...+...+. ..+.+|+|+|. +++.|+..+|.++.+ +++
T Consensus 23 ~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~---~~~kal~i~P~raLa~q~~~~~~~~~~~g~~ 96 (737)
T PRK02362 23 ELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA---RGGKALYIVPLRALASEKFEEFERFEELGVR 96 (737)
T ss_pred cCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHHHHhhcCCCE
Confidence 7999999999743 335789999999999999998655444333 24579999999 889999999998754 578
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHh--hhccCeeEEEEcCCcccCChh--hHHHHHHHcc----
Q 001197 485 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGY---- 556 (1125)
Q Consensus 485 vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~--L~ki~w~~VIIDEAHriKN~~--SklskaL~~l---- 556 (1125)
+.++.|....... + ....+|+|+|++.+...... ..--...+|||||+|.+.+.. ..+-..+..+
T Consensus 97 v~~~tGd~~~~~~----~---l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~ 169 (737)
T PRK02362 97 VGISTGDYDSRDE----W---LGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN 169 (737)
T ss_pred EEEEeCCcCcccc----c---cCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC
Confidence 8888886543221 1 14679999999977442211 001246899999999996532 2222222222
Q ss_pred ccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHH
Q 001197 557 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 636 (1125)
Q Consensus 557 ~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~ 636 (1125)
...+.++||||+ .|..++.. |+...... ...+|.-+
T Consensus 170 ~~~qii~lSATl--~n~~~la~------------------wl~~~~~~-------------------~~~rpv~l----- 205 (737)
T PRK02362 170 PDLQVVALSATI--GNADELAD------------------WLDAELVD-------------------SEWRPIDL----- 205 (737)
T ss_pred CCCcEEEEcccC--CCHHHHHH------------------HhCCCccc-------------------CCCCCCCC-----
Confidence 445789999996 23444433 32211000 00011110
Q ss_pred HHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhc
Q 001197 637 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 716 (1125)
Q Consensus 637 dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S 716 (1125)
...+... .. ..... .. + .+.... ..
T Consensus 206 ----------~~~v~~~-~~--------------~~~~~---~~----------~------~~~~~~-----------~~ 230 (737)
T PRK02362 206 ----------REGVFYG-GA--------------IHFDD---SQ----------R------EVEVPS-----------KD 230 (737)
T ss_pred ----------eeeEecC-Ce--------------ecccc---cc----------c------cCCCcc-----------ch
Confidence 0001000 00 00000 00 0 000000 00
Q ss_pred chHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhC------------------------------------CCeE
Q 001197 717 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN------------------------------------DFKF 760 (1125)
Q Consensus 717 ~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~------------------------------------gi~~ 760 (1125)
..+..+. .....+.++||||+.......+...|... ...+
T Consensus 231 ~~~~~~~----~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gv 306 (737)
T PRK02362 231 DTLNLVL----DTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGA 306 (737)
T ss_pred HHHHHHH----HHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCE
Confidence 1112222 22236789999999988776666555422 1357
Q ss_pred EEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEE----eC-----CCCChhhHHHHHhhhcccC
Q 001197 761 LRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII----FD-----SDWNPQMDQQAEDRAHRIG 831 (1125)
Q Consensus 761 ~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi----~D-----~~WNP~~d~QAigRahRIG 831 (1125)
..+||+++..+|..+.+.|.++... +|++|.+.+.|+|+++.+.||. || .|.++..+.|++|||+|.|
T Consensus 307 a~hHagl~~~eR~~ve~~Fr~G~i~---VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g 383 (737)
T PRK02362 307 AFHHAGLSREHRELVEDAFRDRLIK---VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPG 383 (737)
T ss_pred EeecCCCCHHHHHHHHHHHHcCCCe---EEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCC
Confidence 8889999999999999999997755 6999999999999998877775 77 5778899999999999999
Q ss_pred CCCcEEEEEEEeC
Q 001197 832 QKKEVRVFVLVSV 844 (1125)
Q Consensus 832 Qkk~V~VyrLIt~ 844 (1125)
....-.++-++..
T Consensus 384 ~d~~G~~ii~~~~ 396 (737)
T PRK02362 384 LDPYGEAVLLAKS 396 (737)
T ss_pred CCCCceEEEEecC
Confidence 8766556666644
No 54
>PRK01172 ski2-like helicase; Provisional
Probab=99.84 E-value=5.5e-19 Score=220.71 Aligned_cols=309 Identities=19% Similarity=0.180 Sum_probs=196.0
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCC-Cc
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-SI 483 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p-~~ 483 (1125)
.+|+|+|.+++..+. .+.+.|++.++|+|||+++...+...+.. .+.+|+|+|. +++.++..+|.++.. +.
T Consensus 21 ~~l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGM 93 (674)
T ss_pred CCCCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 479999999998653 47789999999999999987665544433 3578999998 788899999988653 46
Q ss_pred eEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH----HhhhccCeeEEEEcCCcccCChh--hHHHHHH---H
Q 001197 484 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR----QYLKKVQWIYMIVDEGHRLKNHE--CALAKTI---S 554 (1125)
Q Consensus 484 ~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~----~~L~ki~w~~VIIDEAHriKN~~--SklskaL---~ 554 (1125)
.+....|........ . ...+|+|+|++.+.... ..+. ++.+|||||+|.+.+.. ..+...+ .
T Consensus 94 ~v~~~~G~~~~~~~~----~---~~~dIiv~Tpek~~~l~~~~~~~l~--~v~lvViDEaH~l~d~~rg~~le~ll~~~~ 164 (674)
T PRK01172 94 RVKISIGDYDDPPDF----I---KRYDVVILTSEKADSLIHHDPYIIN--DVGLIVADEIHIIGDEDRGPTLETVLSSAR 164 (674)
T ss_pred eEEEEeCCCCCChhh----h---ccCCEEEECHHHHHHHHhCChhHHh--hcCEEEEecchhccCCCccHHHHHHHHHHH
Confidence 666666654322111 1 46799999998764322 2222 56799999999996432 2222222 2
Q ss_pred cc-ccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 001197 555 GY-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 633 (1125)
Q Consensus 555 ~l-~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR 633 (1125)
.+ ...+.++||||+- +..+ |.+|++.+... ...+|
T Consensus 165 ~~~~~~riI~lSATl~--n~~~------------------la~wl~~~~~~-------------------~~~r~----- 200 (674)
T PRK01172 165 YVNPDARILALSATVS--NANE------------------LAQWLNASLIK-------------------SNFRP----- 200 (674)
T ss_pred hcCcCCcEEEEeCccC--CHHH------------------HHHHhCCCccC-------------------CCCCC-----
Confidence 22 3456799999962 2333 33444321100 00000
Q ss_pred hHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHH
Q 001197 634 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 713 (1125)
Q Consensus 634 ~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li 713 (1125)
.|-. ..++... ..| ... ...
T Consensus 201 --------vpl~-~~i~~~~------~~~----------~~~-~~~---------------------------------- 220 (674)
T PRK01172 201 --------VPLK-LGILYRK------RLI----------LDG-YER---------------------------------- 220 (674)
T ss_pred --------CCeE-EEEEecC------eee----------ecc-ccc----------------------------------
Confidence 1100 0111000 000 000 000
Q ss_pred hhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhC-------------------------CCeEEEecCCCC
Q 001197 714 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN-------------------------DFKFLRLDGSTK 768 (1125)
Q Consensus 714 ~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~-------------------------gi~~~rLdGsts 768 (1125)
... .+..++......++++|||++.....+.+...|... ...+..+||+++
T Consensus 221 ---~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~ 296 (674)
T PRK01172 221 ---SQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLS 296 (674)
T ss_pred ---ccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCC
Confidence 000 012233333456788999999988777776666432 123677899999
Q ss_pred HHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCC---------CCChhhHHHHHhhhcccCCCCcEEEE
Q 001197 769 TEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDS---------DWNPQMDQQAEDRAHRIGQKKEVRVF 839 (1125)
Q Consensus 769 ~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~---------~WNP~~d~QAigRahRIGQkk~V~Vy 839 (1125)
.++|..+.+.|.++... +|++|.+.+.|+|+++ .+||++|. ++++..+.|++|||+|.|.......+
T Consensus 297 ~~eR~~ve~~f~~g~i~---VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~ 372 (674)
T PRK01172 297 NEQRRFIEEMFRNRYIK---VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGY 372 (674)
T ss_pred HHHHHHHHHHHHcCCCe---EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEE
Confidence 99999999999987654 6999999999999985 67888764 45778899999999999976653333
Q ss_pred EEE
Q 001197 840 VLV 842 (1125)
Q Consensus 840 rLI 842 (1125)
-++
T Consensus 373 i~~ 375 (674)
T PRK01172 373 IYA 375 (674)
T ss_pred EEe
Confidence 333
No 55
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.83 E-value=1.3e-18 Score=201.21 Aligned_cols=314 Identities=17% Similarity=0.161 Sum_probs=194.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCCceEEEEcCChhHH-----------H
Q 001197 429 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRPDER-----------K 496 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~~~vivy~G~~~~R-----------~ 496 (1125)
.++..++|+|||.+++.++...... ...+.+++|+|. +++.|+...+..++.. .+..++|..... .
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~-~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKS-QKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhh-CCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHH
Confidence 3788999999999998887766543 345688999998 8899999999998754 344444433210 0
Q ss_pred HHHHHHHhh---cCCccEEEecHHHHHHhHHh--------hhccCeeEEEEcCCcccCChhh-HHHHHHHcc--ccceEE
Q 001197 497 AMREEFFSE---RGRFNVLITHYDLIMRDRQY--------LKKVQWIYMIVDEGHRLKNHEC-ALAKTISGY--QIQRRL 562 (1125)
Q Consensus 497 ~l~~~~~~~---~~~fdVvITTYe~l~kd~~~--------L~ki~w~~VIIDEAHriKN~~S-klskaL~~l--~s~~RL 562 (1125)
......... ....+++++|++.+...... +..+...+|||||+|.+..... .+...+..+ .....+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 011111000 02357999999987654322 2233447899999999975422 233333333 234679
Q ss_pred EeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHHHHhhhC
Q 001197 563 LLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYL 642 (1125)
Q Consensus 563 lLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~dV~~~L 642 (1125)
++|||+- ..+..++. .+.... .....
T Consensus 160 ~~SATlp----~~l~~~~~---------------~~~~~~-----------------------------------~~~~~ 185 (358)
T TIGR01587 160 LMSATLP----KFLKEYAE---------------KIGYVE-----------------------------------FNEPL 185 (358)
T ss_pred EEecCch----HHHHHHHh---------------cCCCcc-----------------------------------cccCC
Confidence 9999962 11111000 000000 00000
Q ss_pred CCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhcchHHHH
Q 001197 643 PGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELL 722 (1125)
Q Consensus 643 P~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S~Kle~L 722 (1125)
+.. +. +..-.|++..... ....|...+
T Consensus 186 ~~~----------~~---------------------------------~~~~~~~~~~~~~----------~~~~~~~~l 212 (358)
T TIGR01587 186 DLK----------EE---------------------------------RRFERHRFIKIES----------DKVGEISSL 212 (358)
T ss_pred CCc----------cc---------------------------------cccccccceeecc----------ccccCHHHH
Confidence 000 00 0000111110000 011344455
Q ss_pred HHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCC--eEEEecCCCCHHHHHHH----HHHHcCCCCCceEEEeecccc
Q 001197 723 DRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDF--KFLRLDGSTKTEERGTL----LKQFNAPDSPYFMFLLSTRAG 796 (1125)
Q Consensus 723 ~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi--~~~rLdGsts~~eR~~~----I~~Fn~~ds~~~VfLLSTrAG 796 (1125)
..++..+ ..+.++||||+....++.+...|...+. .+..++|.++..+|... ++.|.++... +|+||.+.
T Consensus 213 ~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~---ilvaT~~~ 288 (358)
T TIGR01587 213 ERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKF---VIVATQVI 288 (358)
T ss_pred HHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCe---EEEECcch
Confidence 5555433 4578999999999999999999987765 58999999999999764 8899886544 69999999
Q ss_pred ccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCC----cEEEEEEEeCC---CHHHHHHHHHHHH
Q 001197 797 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKK----EVRVFVLVSVG---SIEEVILERAKQK 858 (1125)
Q Consensus 797 G~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk----~V~VyrLIt~~---TIEE~Il~r~~~K 858 (1125)
+.|||+ .+++||+++.+ +..+.|++||++|.|.+. .|.||.....+ ..+..++++-.++
T Consensus 289 ~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~~ 354 (358)
T TIGR01587 289 EASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQK 354 (358)
T ss_pred hceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHHH
Confidence 999999 58999998765 889999999999999764 35555554443 4455555554433
No 56
>PRK00254 ski2-like helicase; Provisional
Probab=99.83 E-value=1.1e-18 Score=219.26 Aligned_cols=317 Identities=20% Similarity=0.194 Sum_probs=198.8
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHH-HHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCC-C
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-S 482 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaI-ali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p-~ 482 (1125)
..|+|+|.+++.- .+..+.+.|++.++|+|||+.+. +++..+... .+.+|+|+|. +++.++..+|..|.. +
T Consensus 22 ~~l~~~Q~~ai~~---~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~---~~~~l~l~P~~aLa~q~~~~~~~~~~~g 95 (720)
T PRK00254 22 EELYPPQAEALKS---GVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE---GGKAVYLVPLKALAEEKYREFKDWEKLG 95 (720)
T ss_pred CCCCHHHHHHHHH---HHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHHHHHHHHHHHHhhcC
Confidence 3799999999963 23357889999999999999994 444444432 3578999999 788899999888753 5
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHH----hhhccCeeEEEEcCCcccCC--hhhHHHHHHHcc
Q 001197 483 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ----YLKKVQWIYMIVDEGHRLKN--HECALAKTISGY 556 (1125)
Q Consensus 483 ~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~----~L~ki~w~~VIIDEAHriKN--~~SklskaL~~l 556 (1125)
+.+..+.|....... +. +.++|+|+|++.+..... .+. +..+|||||+|.+.. ....+...+..+
T Consensus 96 ~~v~~~~Gd~~~~~~----~~---~~~~IiV~Tpe~~~~ll~~~~~~l~--~l~lvViDE~H~l~~~~rg~~le~il~~l 166 (720)
T PRK00254 96 LRVAMTTGDYDSTDE----WL---GKYDIIIATAEKFDSLLRHGSSWIK--DVKLVVADEIHLIGSYDRGATLEMILTHM 166 (720)
T ss_pred CEEEEEeCCCCCchh----hh---ccCCEEEEcHHHHHHHHhCCchhhh--cCCEEEEcCcCccCCccchHHHHHHHHhc
Confidence 777778876543221 11 568999999998754321 222 567999999999964 334444555544
Q ss_pred -ccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhH
Q 001197 557 -QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 635 (1125)
Q Consensus 557 -~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K 635 (1125)
...+.++||||+- |..++- +|++...... ..+|.
T Consensus 167 ~~~~qiI~lSATl~--n~~~la------------------~wl~~~~~~~-------------------~~rpv------ 201 (720)
T PRK00254 167 LGRAQILGLSATVG--NAEELA------------------EWLNAELVVS-------------------DWRPV------ 201 (720)
T ss_pred CcCCcEEEEEccCC--CHHHHH------------------HHhCCccccC-------------------CCCCC------
Confidence 4467899999962 244443 3332210000 00110
Q ss_pred HHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhh
Q 001197 636 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 715 (1125)
Q Consensus 636 ~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~ 715 (1125)
|-. ..+.... ......+ ....+
T Consensus 202 -------~l~--~~~~~~~---------------~~~~~~~--~~~~~-------------------------------- 223 (720)
T PRK00254 202 -------KLR--KGVFYQG---------------FLFWEDG--KIERF-------------------------------- 223 (720)
T ss_pred -------cce--eeEecCC---------------eeeccCc--chhcc--------------------------------
Confidence 100 0000000 0000000 00000
Q ss_pred cchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHh---------------------------------CCCeEEE
Q 001197 716 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL---------------------------------NDFKFLR 762 (1125)
Q Consensus 716 S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~---------------------------------~gi~~~r 762 (1125)
...+..++..+...+.++||||+.......+...|.. ....+..
T Consensus 224 ---~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~ 300 (720)
T PRK00254 224 ---PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAF 300 (720)
T ss_pred ---hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEE
Confidence 0001112222233578899999988765544433311 1235788
Q ss_pred ecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEE-------eCCCC-ChhhHHHHHhhhcccCCCC
Q 001197 763 LDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII-------FDSDW-NPQMDQQAEDRAHRIGQKK 834 (1125)
Q Consensus 763 LdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi-------~D~~W-NP~~d~QAigRahRIGQkk 834 (1125)
+||+++.++|..+.+.|.++... +|++|.+.+.|+|+++.+.||. ++.++ ....+.|++|||+|.|...
T Consensus 301 hHagl~~~eR~~ve~~F~~G~i~---VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~ 377 (720)
T PRK00254 301 HHAGLGRTERVLIEDAFREGLIK---VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDE 377 (720)
T ss_pred eCCCCCHHHHHHHHHHHHCCCCe---EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCC
Confidence 99999999999999999987655 6999999999999998777774 33333 3457899999999998777
Q ss_pred cEEEEEEEeCCC
Q 001197 835 EVRVFVLVSVGS 846 (1125)
Q Consensus 835 ~V~VyrLIt~~T 846 (1125)
.-.++-+++.+.
T Consensus 378 ~G~~ii~~~~~~ 389 (720)
T PRK00254 378 VGEAIIVATTEE 389 (720)
T ss_pred CceEEEEecCcc
Confidence 666666666543
No 57
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.83 E-value=7.2e-19 Score=210.01 Aligned_cols=307 Identities=20% Similarity=0.278 Sum_probs=228.1
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCCce
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 484 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~~~ 484 (1125)
...||-|.+++..+++ +.+.|.-.++|.||++..-.- .++. .|++|||.|+ +|+.+....+.... +.
T Consensus 16 ~~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiP--All~----~G~TLVVSPLiSLM~DQV~~l~~~G--i~ 83 (590)
T COG0514 16 ASFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIP--ALLL----EGLTLVVSPLISLMKDQVDQLEAAG--IR 83 (590)
T ss_pred cccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhH--HHhc----CCCEEEECchHHHHHHHHHHHHHcC--ce
Confidence 4789999999988886 788999999999999765222 2222 5799999999 99999999998865 44
Q ss_pred EEEEcC--ChhHHHHHHHHHHhhcCCccEEEecHHHHHHh--HHhhhccCeeEEEEcCCcccCChh-------hHHHHHH
Q 001197 485 AVVYDG--RPDERKAMREEFFSERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDEGHRLKNHE-------CALAKTI 553 (1125)
Q Consensus 485 vivy~G--~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd--~~~L~ki~w~~VIIDEAHriKN~~-------SklskaL 553 (1125)
+....+ +..++..+...+.. +..+++..++|.+... ...|...+..+++|||||.+.... ..+....
T Consensus 84 A~~lnS~l~~~e~~~v~~~l~~--g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~ 161 (590)
T COG0514 84 AAYLNSTLSREERQQVLNQLKS--GQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLR 161 (590)
T ss_pred eehhhcccCHHHHHHHHHHHhc--CceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHH
Confidence 444333 45666666655554 6899999999999765 366778899999999999986532 3556666
Q ss_pred HccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 001197 554 SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 633 (1125)
Q Consensus 554 ~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR 633 (1125)
..|+...+++||||--.--..|+-..|..-.|..|-.. |+.|-
T Consensus 162 ~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s------fdRpN------------------------------- 204 (590)
T COG0514 162 AGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS------FDRPN------------------------------- 204 (590)
T ss_pred hhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec------CCCch-------------------------------
Confidence 77888899999999755556666666554443322111 11110
Q ss_pred hHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHH
Q 001197 634 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 713 (1125)
Q Consensus 634 ~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li 713 (1125)
+|-.+....
T Consensus 205 ---------------------------i~~~v~~~~-------------------------------------------- 213 (590)
T COG0514 205 ---------------------------LALKVVEKG-------------------------------------------- 213 (590)
T ss_pred ---------------------------hhhhhhhcc--------------------------------------------
Confidence 000000000
Q ss_pred hhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeec
Q 001197 714 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 793 (1125)
Q Consensus 714 ~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLST 793 (1125)
..-.++.++.. .....+...||||......+.+..+|...|+....+||+++.++|..+-++|..++.+ ++++|
T Consensus 214 ~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~---iiVAT 287 (590)
T COG0514 214 EPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIK---VMVAT 287 (590)
T ss_pred cHHHHHHHHHh---hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc---EEEEe
Confidence 00001111111 1223455689999999999999999999999999999999999999999999998876 79999
Q ss_pred cccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEE
Q 001197 794 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFV 840 (1125)
Q Consensus 794 rAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~Vyr 840 (1125)
.|.|.|||-++...|||||+|-+...|.|-+|||+|-|....+..++
T Consensus 288 ~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~ 334 (590)
T COG0514 288 NAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLY 334 (590)
T ss_pred ccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEee
Confidence 99999999999999999999999999999999999999888765543
No 58
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=1.5e-18 Score=197.52 Aligned_cols=324 Identities=19% Similarity=0.244 Sum_probs=207.6
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHH-HHHc--cCCCCCEEEEcCccc----HHHHHHHHHh
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAY-LLEN--KGVTGPHVIVAPKAV----LPNWINEFST 478 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~-L~e~--~~~~gp~LIVvP~sl----l~qW~~Ef~k 478 (1125)
..+-|.|...+--.+- +..-+-|..+|+|||-..+.-+.. |+.. +-....+||+||+-- +.+-...+..
T Consensus 202 ~~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaq 277 (691)
T KOG0338|consen 202 KKPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQ 277 (691)
T ss_pred CCCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHh
Confidence 3677778777643332 344456788999999765544433 3322 122346899999833 3445566677
Q ss_pred hCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHh---hhccCeeEEEEcCCcccCChh--hHHHHHH
Q 001197 479 WAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKKVQWIYMIVDEGHRLKNHE--CALAKTI 553 (1125)
Q Consensus 479 ~~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~---L~ki~w~~VIIDEAHriKN~~--SklskaL 553 (1125)
|+ ++.+.+..|.-+.+.+-. ... ..+||||.|+..++.+... |.--...++|+|||.||.... ..+...+
T Consensus 278 Ft-~I~~~L~vGGL~lk~QE~--~LR--s~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii 352 (691)
T KOG0338|consen 278 FT-DITVGLAVGGLDLKAQEA--VLR--SRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEII 352 (691)
T ss_pred hc-cceeeeeecCccHHHHHH--HHh--hCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHH
Confidence 77 477776666655443321 112 5799999999999876543 333356689999999996532 2344444
Q ss_pred Hcc-ccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhh
Q 001197 554 SGY-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 632 (1125)
Q Consensus 554 ~~l-~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLR 632 (1125)
... +.+.-+|.|||. ...+.||.++- +++|
T Consensus 353 ~lcpk~RQTmLFSATM-teeVkdL~slS-----------------L~kP------------------------------- 383 (691)
T KOG0338|consen 353 RLCPKNRQTMLFSATM-TEEVKDLASLS-----------------LNKP------------------------------- 383 (691)
T ss_pred Hhccccccceeehhhh-HHHHHHHHHhh-----------------cCCC-------------------------------
Confidence 333 334458888884 22333333321 0011
Q ss_pred hhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHH
Q 001197 633 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEI 712 (1125)
Q Consensus 633 R~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~l 712 (1125)
.-|+++.+. .....|..-..++|- +
T Consensus 384 ---------------vrifvd~~~---------------------~~a~~LtQEFiRIR~--~----------------- 408 (691)
T KOG0338|consen 384 ---------------VRIFVDPNK---------------------DTAPKLTQEFIRIRP--K----------------- 408 (691)
T ss_pred ---------------eEEEeCCcc---------------------ccchhhhHHHheecc--c-----------------
Confidence 111111100 000000000000000 0
Q ss_pred HhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEee
Q 001197 713 IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 792 (1125)
Q Consensus 713 i~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLS 792 (1125)
+..-+-.+|..++..+. ..+++||++.......|.-.|...|+++.-+||+.++.+|-..++.|.+...+ +||+
T Consensus 409 -re~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid---vLia 482 (691)
T KOG0338|consen 409 -REGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID---VLIA 482 (691)
T ss_pred -cccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC---EEEE
Confidence 00112233444444443 46899999999999999999999999999999999999999999999998877 7999
Q ss_pred ccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHH
Q 001197 793 TRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVIL 852 (1125)
Q Consensus 793 TrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il 852 (1125)
|+.++.||++.+.-+||+|+.|-+...|++|+||..|-|-. -+-..|+.++ |.+|+
T Consensus 483 TDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRa--GrsVtlvgE~--dRkll 538 (691)
T KOG0338|consen 483 TDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRA--GRSVTLVGES--DRKLL 538 (691)
T ss_pred echhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccC--cceEEEeccc--cHHHH
Confidence 99999999999999999999999999999999999999843 3444566655 44444
No 59
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=206.30 Aligned_cols=330 Identities=19% Similarity=0.177 Sum_probs=218.1
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHH-HHHHHcc-CCC---CCEEEEcCcccH-HHHHHHHHhh
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALI-AYLLENK-GVT---GPHVIVAPKAVL-PNWINEFSTW 479 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali-~~L~e~~-~~~---gp~LIVvP~sll-~qW~~Ef~k~ 479 (1125)
..|.|.|..++.-+. .|.|.++..+||+|||..|+..+ ..+.+.. +.. -.+|-|.|+-.| ..-...+..|
T Consensus 21 ~~~t~~Q~~a~~~i~----~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEIH----SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHHh----CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 489999999997666 49999999999999999997554 4455542 111 236999999544 4455556555
Q ss_pred C--CCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHH------hHHhhhccCeeEEEEcCCcccCC--hhhHH
Q 001197 480 A--PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMR------DRQYLKKVQWIYMIVDEGHRLKN--HECAL 549 (1125)
Q Consensus 480 ~--p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~k------d~~~L~ki~w~~VIIDEAHriKN--~~Skl 549 (1125)
. -++.+-+-+|....-...+ ....+++|+|||+|++.- -...|..+ .+|||||.|-+.+ ..+.+
T Consensus 97 ~~~~G~~v~vRhGDT~~~er~r----~~~~PPdILiTTPEsL~lll~~~~~r~~l~~v--r~VIVDEiHel~~sKRG~~L 170 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEKQK----MLKNPPHILITTPESLAILLNSPKFRELLRDV--RYVIVDEIHALAESKRGVQL 170 (814)
T ss_pred HHHcCCccceecCCCChHHhhh----ccCCCCcEEEeChhHHHHHhcCHHHHHHhcCC--cEEEeehhhhhhccccchhh
Confidence 4 2566677787644322211 112789999999999853 23445544 4699999999975 44667
Q ss_pred HHHHHcc---c-cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhh
Q 001197 550 AKTISGY---Q-IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 625 (1125)
Q Consensus 550 skaL~~l---~-s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~v 625 (1125)
+-.|.++ . .-.|++||||- .++.++ .+||.+.-- +. . +
T Consensus 171 sl~LeRL~~l~~~~qRIGLSATV--~~~~~v---arfL~g~~~------------~~------~---------------I 212 (814)
T COG1201 171 ALSLERLRELAGDFQRIGLSATV--GPPEEV---AKFLVGFGD------------PC------E---------------I 212 (814)
T ss_pred hhhHHHHHhhCcccEEEeehhcc--CCHHHH---HHHhcCCCC------------ce------E---------------E
Confidence 6666544 2 46899999994 233333 334322100 00 0 0
Q ss_pred hhhhhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccc
Q 001197 626 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYN 705 (1125)
Q Consensus 626 L~pflLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~ 705 (1125)
|......+.+..+.++-......
T Consensus 213 ------------v~~~~~k~~~i~v~~p~~~~~~~--------------------------------------------- 235 (814)
T COG1201 213 ------------VDVSAAKKLEIKVISPVEDLIYD--------------------------------------------- 235 (814)
T ss_pred ------------EEcccCCcceEEEEecCCccccc---------------------------------------------
Confidence 00001111111111110000000
Q ss_pred hhhHHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCC-CeEEEecCCCCHHHHHHHHHHHcCCCC
Q 001197 706 MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLND-FKFLRLDGSTKTEERGTLLKQFNAPDS 784 (1125)
Q Consensus 706 ~~~~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~g-i~~~rLdGsts~~eR~~~I~~Fn~~ds 784 (1125)
..-...+.+.+..+..+...+|||++..++.+.+...|...+ ..+...|||.+.+.|..+-++|..+.-
T Consensus 236 ----------~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~l 305 (814)
T COG1201 236 ----------EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGEL 305 (814)
T ss_pred ----------cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCc
Confidence 001122333344444555689999999999999999998876 899999999999999999999999885
Q ss_pred CceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhh-cccCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 001197 785 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRA-HRIGQKKEVRVFVLVSVGSIEEVILERAKQ 857 (1125)
Q Consensus 785 ~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRa-hRIGQkk~V~VyrLIt~~TIEE~Il~r~~~ 857 (1125)
. .++||....+||++-..|.||.|.+|-.-...+||+||+ ||+|.... .++++.+ .++.+-..+..
T Consensus 306 r---avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Sk---g~ii~~~-r~dllE~~vi~ 372 (814)
T COG1201 306 K---AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSK---GIIIAED-RDDLLECLVLA 372 (814)
T ss_pred e---EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCccc---EEEEecC-HHHHHHHHHHH
Confidence 5 589999999999999999999999999999999999999 77775443 3445555 45444444333
No 60
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.78 E-value=7.4e-17 Score=198.22 Aligned_cols=390 Identities=17% Similarity=0.189 Sum_probs=219.7
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCC--Cc
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--SI 483 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p--~~ 483 (1125)
.++|||.+.+..++. +.|+|....+|.|||++++..+. +... ....++||+|+ .|..+|..++..++. ++
T Consensus 68 glrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa~-l~aL--~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPLY-LNAL--TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHHH-HHhh--cCCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 467777777765543 44579999999999999875542 2221 12358999999 566777777655432 34
Q ss_pred eEEE-EcCChh--HHHHHHHHHHhhcCCccEEEecHHHHHHhH--Hh-------hhccCeeEEEEcCCcccCChhhHHHH
Q 001197 484 AAVV-YDGRPD--ERKAMREEFFSERGRFNVLITHYDLIMRDR--QY-------LKKVQWIYMIVDEGHRLKNHECALAK 551 (1125)
Q Consensus 484 ~viv-y~G~~~--~R~~l~~~~~~~~~~fdVvITTYe~l~kd~--~~-------L~ki~w~~VIIDEAHriKN~~Sklsk 551 (1125)
.+.+ +.|+.. .....+... ..++|+++|.+.+..+. .. +....+.++||||||.|--..
T Consensus 141 sv~~~~~~s~~~~~~~~~rr~~----y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDe----- 211 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKRKI----YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDS----- 211 (762)
T ss_pred cEEEEECCCCccccCHHHHHHh----CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhcc-----
Confidence 4443 333111 111111111 46899999999884321 11 112367799999999974322
Q ss_pred HHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChH-----------------H
Q 001197 552 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDE-----------------E 614 (1125)
Q Consensus 552 aL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~e-----------------e 614 (1125)
+...+++||.|-.. ..+|..++-+-+..-.. ..| .. ......+.+++. +
T Consensus 212 ------artpliisg~~~~~--~~~y~~~~~~v~~l~~~-~dy----~~-d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~ 277 (762)
T TIGR03714 212 ------AQTPLVISGAPRVQ--SNLYHIADTFVRTLKED-VDY----IF-KKDKKEVWLTDKGIEKAEQYFKIDNLYSEE 277 (762)
T ss_pred ------CcCCeeeeCCCccc--hHHHHHHHHHHHhcCCC-CCe----EE-EcCCCeeeecHhHHHHHHHHcCCCccCChh
Confidence 34458899977533 34666553221111110 000 00 000111112221 1
Q ss_pred HHHHHHHHHhhhhh-hhhhhhHHHHhhhCCCCeEEEEEecCC-------HHHHHHHHHHHhhcccccccCC--CccchHH
Q 001197 615 QLLIIRRLHHVIRP-FILRRKKDEVEKYLPGKSQVILKCDMS-------AWQKVYYQQVTDVGRVGLDTGT--GKSKSLQ 684 (1125)
Q Consensus 615 ~~~~i~rL~~vL~p-flLRR~K~dV~~~LP~k~e~vi~~~ms-------~~Q~~lY~~i~~~~~~~l~~~~--~k~~~l~ 684 (1125)
....+..+...|+- +++.|-+.=+ +.+... ++--.+| .++.-+-+.+..+....+.... ..+-+++
T Consensus 278 ~~~~~~~i~~al~A~~~~~~d~dYi---V~~~~v-~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~q 353 (762)
T TIGR03714 278 YFELVRHINLALRAHYLFKRNKDYV---VTNGEV-VLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQ 353 (762)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCceE---EECCEE-EEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHH
Confidence 11112222222222 1111111100 111111 1111111 1222233333222211111100 0011112
Q ss_pred HH-----------------HHHHHHhhCCCcccccccchhhHHH-----HHhhcchHHHHHHHhHHhhhCCCEEEEEecc
Q 001197 685 NL-----------------SMQLRKCCNHPYLFVGEYNMWRKEE-----IIRASGKFELLDRLLPKLRKSGHRVLLFSQM 742 (1125)
Q Consensus 685 n~-----------------~~qLRkicnhP~L~~~~~~~~~~~~-----li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~ 742 (1125)
|+ ...+.++.+-+.+..+...+....+ ......|+..+.+.+..+...+.+|||||..
T Consensus 354 n~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s 433 (762)
T TIGR03714 354 NLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGS 433 (762)
T ss_pred HHHhhCchhcccCCCChhHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECc
Confidence 21 2244555555544443322211100 1233568999999998888899999999999
Q ss_pred chHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCC---------CCCEEEEeCC
Q 001197 743 TRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ---------TADTVIIFDS 813 (1125)
Q Consensus 743 t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq---------~Ad~VIi~D~ 813 (1125)
....+.+...|...|+++..++|.+...++..+...|+.+ . ++++|..+|+|+++. +.++||.|++
T Consensus 434 ~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~---VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ 508 (762)
T TIGR03714 434 VEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--A---VTVATSMAGRGTDIKLGKGVAELGGLAVIGTERM 508 (762)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--e---EEEEccccccccCCCCCccccccCCeEEEEecCC
Confidence 9999999999999999999999999988887776666553 2 699999999999999 7899999999
Q ss_pred CCChhhHHHHHhhhcccCCCCcE
Q 001197 814 DWNPQMDQQAEDRAHRIGQKKEV 836 (1125)
Q Consensus 814 ~WNP~~d~QAigRahRIGQkk~V 836 (1125)
|-+. .+.|+.||++|.|.+-.+
T Consensus 509 ps~r-id~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 509 ENSR-VDLQLRGRSGRQGDPGSS 530 (762)
T ss_pred CCcH-HHHHhhhcccCCCCceeE
Confidence 9765 459999999999876543
No 61
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.78 E-value=7e-17 Score=200.74 Aligned_cols=368 Identities=14% Similarity=0.081 Sum_probs=205.0
Q ss_pred CCccHHHHHHHHHHHHhhcc------CCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHh
Q 001197 406 GELRAYQLEGLQWMLSLFNN------NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFST 478 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~------~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k 478 (1125)
.-+|+||..+|+-++....+ ..+|++.+.+|+|||++++.++..++... ....+|||||. .|..||..+|..
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~-~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL-KNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc-CCCeEEEEECcHHHHHHHHHHHHh
Confidence 46899999999999887644 45799999999999999999988877543 34578999998 889999999999
Q ss_pred hCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH-Hhhhcc----CeeEEEEcCCcccCChhhHHHHHH
Q 001197 479 WAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR-QYLKKV----QWIYMIVDEGHRLKNHECALAKTI 553 (1125)
Q Consensus 479 ~~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~-~~L~ki----~w~~VIIDEAHriKN~~SklskaL 553 (1125)
+.+.... -.++. ..+...+.. ....|+|||++.+.+.. ..+... ...+||+|||||... ..+...+
T Consensus 316 ~~~~~~~--~~~s~---~~L~~~l~~--~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~~~~~~l 386 (667)
T TIGR00348 316 LQKDCAE--RIESI---AELKRLLEK--DDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--GELAKNL 386 (667)
T ss_pred hCCCCCc--ccCCH---HHHHHHHhC--CCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--hHHHHHH
Confidence 9853211 11222 222222221 34679999999997532 222221 224899999999643 2455556
Q ss_pred -HccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhh
Q 001197 554 -SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 632 (1125)
Q Consensus 554 -~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLR 632 (1125)
..++..++++|||||+...-.+-+..+. ..|+.++... .+ .+ ++.. ..+-|+
T Consensus 387 ~~~~p~a~~lGfTaTP~~~~d~~t~~~f~--------------~~fg~~i~~Y---~~--~~---AI~d--G~~~~i--- 439 (667)
T TIGR00348 387 KKALKNASFFGFTGTPIFKKDRDTSLTFA--------------YVFGRYLHRY---FI--TD---AIRD--GLTVKI--- 439 (667)
T ss_pred HhhCCCCcEEEEeCCCccccccccccccc--------------CCCCCeEEEe---eH--HH---Hhhc--CCeeeE---
Confidence 4677889999999998642111111111 0011111100 00 00 0000 011111
Q ss_pred hhHHHHhhhCCCCeEEEEEe--cCCHHH-HHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhH
Q 001197 633 RKKDEVEKYLPGKSQVILKC--DMSAWQ-KVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRK 709 (1125)
Q Consensus 633 R~K~dV~~~LP~k~e~vi~~--~ms~~Q-~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~ 709 (1125)
....+.+ .++... ...+..........+. ......+......+..+..+|-.
T Consensus 440 -------------~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~---------- 494 (667)
T TIGR00348 440 -------------DYEDRLPEDHLDRKKLDAFFDEIFELLPERIR--EITKESLKEKLQKTKKILFNEDR---------- 494 (667)
T ss_pred -------------EEEecchhhccChHHHHHHHHHHHHhhhcccc--HHHHHHHHHHHHHHHhhhcChHH----------
Confidence 1111111 111110 0111111110000000 00000111111111111111100
Q ss_pred HHHHhhcchHHHHHHHhHHh-hhCCCEEEEEeccchHHHHHHHHHHhC-----CCeEEEecCCCCHH-------------
Q 001197 710 EEIIRASGKFELLDRLLPKL-RKSGHRVLLFSQMTRLMDILEIYLKLN-----DFKFLRLDGSTKTE------------- 770 (1125)
Q Consensus 710 ~~li~~S~Kle~L~~lL~kl-~~~g~KVLIFsq~t~~ldiLe~~L~~~-----gi~~~rLdGsts~~------------- 770 (1125)
.......+.+...+. ...+.|.+|||.+...+..+...|... +...+.++|+.+.+
T Consensus 495 -----~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~ 569 (667)
T TIGR00348 495 -----LESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTK 569 (667)
T ss_pred -----HHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccc
Confidence 000111111111111 123589999999998887777776433 34556677765433
Q ss_pred --------HHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhccc-CCCC-cEEEEE
Q 001197 771 --------ERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRI-GQKK-EVRVFV 840 (1125)
Q Consensus 771 --------eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRI-GQkk-~V~Vyr 840 (1125)
....++++|.+++ +.. +|+++....+|.|.+.++++++.-|--+ +..+|++||+.|+ +-.| ...|+.
T Consensus 570 ~~~~~~~~~~~~~~~~Fk~~~-~~~-ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~g~IvD 646 (667)
T TIGR00348 570 FDKSDGFEIYYKDLERFKKEE-NPK-LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTFGLIVD 646 (667)
T ss_pred cccchhhhHHHHHHHHhcCCC-Cce-EEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCCEEEEE
Confidence 2347899998753 344 5777899999999999999999888765 5689999999996 4334 478888
Q ss_pred EEe
Q 001197 841 LVS 843 (1125)
Q Consensus 841 LIt 843 (1125)
|+.
T Consensus 647 y~g 649 (667)
T TIGR00348 647 YRG 649 (667)
T ss_pred CcC
Confidence 775
No 62
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=3.8e-18 Score=194.39 Aligned_cols=352 Identities=18% Similarity=0.234 Sum_probs=213.7
Q ss_pred CCccHHHHHHHHHHHHhhcc-----CCCeEEEcCCCchHHHHHHHHHHHHHHccCC-CCCEEEEcCc-ccHHHHHHHHHh
Q 001197 406 GELRAYQLEGLQWMLSLFNN-----NLNGILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVAPK-AVLPNWINEFST 478 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~-----~~~GILADEMGLGKTiqaIali~~L~e~~~~-~gp~LIVvP~-sll~qW~~Ef~k 478 (1125)
..++|.|...+-|++.-.+. .....++.++|+|||+...--|..++..+.. +-..|||+|. -+..|-..+|.+
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred ccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 38999999999999875442 2334678999999999876666666555433 3467999999 667888999999
Q ss_pred hCCC--ceEEEEcCChhHHHHHHHHHHh-hcCCccEEEecHHHHHHhHHh---hhccCeeEEEEcCCcccCChhh--HHH
Q 001197 479 WAPS--IAAVVYDGRPDERKAMREEFFS-ERGRFNVLITHYDLIMRDRQY---LKKVQWIYMIVDEGHRLKNHEC--ALA 550 (1125)
Q Consensus 479 ~~p~--~~vivy~G~~~~R~~l~~~~~~-~~~~fdVvITTYe~l~kd~~~---L~ki~w~~VIIDEAHriKN~~S--kls 550 (1125)
|++. +.|....|...-+....+..-. .....||+|+|+..+..+... +.--+..++|||||.||.+..- .+-
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~ 317 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLD 317 (620)
T ss_pred hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHH
Confidence 9975 5666677776555544332211 113459999999999876543 2223566899999999876432 222
Q ss_pred HHHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhh
Q 001197 551 KTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 630 (1125)
Q Consensus 551 kaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pfl 630 (1125)
..+.......++.++ ..+..+..-..|..+.... .-+..+ ...|.+++.+-.
T Consensus 318 ~v~~~~~~~k~~~~~--------~nii~~~~~~~pt~~~e~~---t~~~~~-----------------~~~l~kL~~sat 369 (620)
T KOG0350|consen 318 TVMSLCKTMKRVACL--------DNIIRQRQAPQPTVLSELL---TKLGKL-----------------YPPLWKLVFSAT 369 (620)
T ss_pred HHHHHhCCchhhcCh--------hhhhhhcccCCchhhHHHH---hhcCCc-----------------CchhHhhhcchh
Confidence 222222222222211 1111111111111111000 000000 011112222222
Q ss_pred hhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCccccccc---chh
Q 001197 631 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEY---NMW 707 (1125)
Q Consensus 631 LRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~---~~~ 707 (1125)
|-+.-.-+.+ | -.+||-++.-.. ..+
T Consensus 370 LsqdP~Kl~~-------------------------------------------------l--~l~~Prl~~v~~~~~~ry 398 (620)
T KOG0350|consen 370 LSQDPSKLKD-------------------------------------------------L--TLHIPRLFHVSKPLIGRY 398 (620)
T ss_pred hhcChHHHhh-------------------------------------------------h--hcCCCceEEeecccceee
Confidence 2111111110 0 012222211100 000
Q ss_pred h-----HHHHHhhcc--hHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHH----hCCCeEEEecCCCCHHHHHHHH
Q 001197 708 R-----KEEIIRASG--KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLL 776 (1125)
Q Consensus 708 ~-----~~~li~~S~--Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~----~~gi~~~rLdGsts~~eR~~~I 776 (1125)
. ....+.... |-..+..++.. ....++|+|+...+....+...|. ...+++-.++|+.+.+.|.+++
T Consensus 399 slp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l 476 (620)
T KOG0350|consen 399 SLPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKML 476 (620)
T ss_pred ecChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHH
Confidence 0 000011122 33344444443 357899999999988777776665 4567777899999999999999
Q ss_pred HHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEe
Q 001197 777 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVS 843 (1125)
Q Consensus 777 ~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt 843 (1125)
.+|+.++.. +|+++++..+|+++...+.||.||||-.-..|.+|+||..|-||.- ++|.++.
T Consensus 477 ~~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~ 538 (620)
T KOG0350|consen 477 EKFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLD 538 (620)
T ss_pred HHHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeec
Confidence 999999877 7999999999999999999999999999999999999999999875 4444444
No 63
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=8.7e-17 Score=182.48 Aligned_cols=316 Identities=19% Similarity=0.280 Sum_probs=216.0
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccC-C--CC--CEEEEcCcccH-HH---HHHHH
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-V--TG--PHVIVAPKAVL-PN---WINEF 476 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~-~--~g--p~LIVvP~sll-~q---W~~Ef 476 (1125)
...-|.|..++-.++. +.....-..+|+|||+..+.-+...+.... . .+ -.|||+|+--+ .| -...|
T Consensus 27 ~~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 4788999999977775 777888889999999998877776652221 1 12 35999998433 33 34456
Q ss_pred HhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH----HhhhccCeeEEEEcCCcccCChh--hHHH
Q 001197 477 STWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR----QYLKKVQWIYMIVDEGHRLKNHE--CALA 550 (1125)
Q Consensus 477 ~k~~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~----~~L~ki~w~~VIIDEAHriKN~~--Skls 550 (1125)
-.++|++++.++.|...-...+. .+.. ...+|+|.|++-+..-. ..+.--...++|+|||.++-... ..+.
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~-~fke--e~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n 179 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIK-TFKE--EGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVN 179 (567)
T ss_pred HHhhhccceEEEecCccHHHHHH-HHHH--hCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHH
Confidence 66678899999888855544432 2222 56889999998775533 33554467799999999997643 4566
Q ss_pred HHHHccccceEEE-eecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhh
Q 001197 551 KTISGYQIQRRLL-LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPF 629 (1125)
Q Consensus 551 kaL~~l~s~~RLl-LTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pf 629 (1125)
..|..++.++|-+ .|||-.+ ...+| ..+
T Consensus 180 ~ILs~LPKQRRTGLFSATq~~-~v~dL---~ra----------------------------------------------- 208 (567)
T KOG0345|consen 180 TILSFLPKQRRTGLFSATQTQ-EVEDL---ARA----------------------------------------------- 208 (567)
T ss_pred HHHHhcccccccccccchhhH-HHHHH---HHh-----------------------------------------------
Confidence 6777777777754 4666311 11111 100
Q ss_pred hhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhH
Q 001197 630 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRK 709 (1125)
Q Consensus 630 lLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~ 709 (1125)
-|| ......+... ........+.+. |+
T Consensus 209 GLR-----------Npv~V~V~~k---------------------~~~~tPS~L~~~-----------Y~---------- 235 (567)
T KOG0345|consen 209 GLR-----------NPVRVSVKEK---------------------SKSATPSSLALE-----------YL---------- 235 (567)
T ss_pred hcc-----------Cceeeeeccc---------------------ccccCchhhcce-----------ee----------
Confidence 011 0000000000 000000001000 00
Q ss_pred HHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHh--CCCeEEEecCCCCHHHHHHHHHHHcCCCCCce
Q 001197 710 EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL--NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 787 (1125)
Q Consensus 710 ~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~--~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~ 787 (1125)
.+.+..|+..|.++|.. ...+|+|||+.+....++....|.. ....++-+||.++...|..++..|.+..+.
T Consensus 236 --v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~-- 309 (567)
T KOG0345|consen 236 --VCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG-- 309 (567)
T ss_pred --EecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc--
Confidence 01234477788888876 4678999999999999888777753 578899999999999999999999985444
Q ss_pred EEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEE
Q 001197 788 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 839 (1125)
Q Consensus 788 VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~Vy 839 (1125)
+|+||++++.||++++.|.||.||||-+|..+.+|.||+.|.|..-.-.||
T Consensus 310 -vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 310 -VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred -eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 699999999999999999999999999999999999999999976554443
No 64
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.77 E-value=4.5e-17 Score=201.87 Aligned_cols=106 Identities=24% Similarity=0.375 Sum_probs=88.1
Q ss_pred hCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHH-----HHHHHHcC----CC----CCceEEEeeccccc
Q 001197 731 KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERG-----TLLKQFNA----PD----SPYFMFLLSTRAGG 797 (1125)
Q Consensus 731 ~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~-----~~I~~Fn~----~d----s~~~VfLLSTrAGG 797 (1125)
..+.++||||+.....+.+...|...++ ..++|.+++.+|. .++++|.. +. .+-..+|++|.+++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 4578999999999999999999998887 8999999999999 78999976 22 01134799999999
Q ss_pred cccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCc--EEEEEE
Q 001197 798 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE--VRVFVL 841 (1125)
Q Consensus 798 ~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~--V~VyrL 841 (1125)
.|||+.. ++||+++.|+ ..|+||+||++|.|.... +.|+.+
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 9999975 9999987764 799999999999998644 455433
No 65
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.76 E-value=5.3e-17 Score=211.23 Aligned_cols=96 Identities=19% Similarity=0.200 Sum_probs=85.3
Q ss_pred CCCEEEEEeccchHHHHHHHHHHhCC---------------------------------CeEEEecCCCCHHHHHHHHHH
Q 001197 732 SGHRVLLFSQMTRLMDILEIYLKLND---------------------------------FKFLRLDGSTKTEERGTLLKQ 778 (1125)
Q Consensus 732 ~g~KVLIFsq~t~~ldiLe~~L~~~g---------------------------------i~~~rLdGsts~~eR~~~I~~ 778 (1125)
.+.++||||+.....+.+...|.... +.+..+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46789999999999999888886431 124568899999999999999
Q ss_pred HcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhccc
Q 001197 779 FNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRI 830 (1125)
Q Consensus 779 Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRI 830 (1125)
|+++... +|++|.+.++|||+..+|.||+|++|.+...++|++||++|.
T Consensus 323 fK~G~Lr---vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGELR---CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCce---EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9998765 699999999999999999999999999999999999999985
No 66
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=3.6e-17 Score=175.27 Aligned_cols=316 Identities=16% Similarity=0.205 Sum_probs=217.5
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHH-HHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCC--C
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQT-IALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 482 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqa-Iali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p--~ 482 (1125)
++..-|..++-.+++ +.+.|.-...|+|||.+. |+++..+-- ....--.||+.|+ -+..|-..-+..... +
T Consensus 49 kPS~IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d~-~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mn 123 (400)
T KOG0328|consen 49 KPSAIQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLDI-SVRETQALILSPTRELAVQIQKVILALGDYMN 123 (400)
T ss_pred CchHHHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeeccc-ccceeeEEEecChHHHHHHHHHHHHHhccccc
Confidence 445578888887776 888899899999999763 444433221 1112357999999 455566666665543 4
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHh--HHhhhccCeeEEEEcCCcccCC--hhhHHHHHHHccc-
Q 001197 483 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDEGHRLKN--HECALAKTISGYQ- 557 (1125)
Q Consensus 483 ~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd--~~~L~ki~w~~VIIDEAHriKN--~~SklskaL~~l~- 557 (1125)
+.+...-|.+..-..+...- -..+||.-|+..+.+- ...|......++|+|||..+.| ...+.+...+.++
T Consensus 124 vq~hacigg~n~gedikkld----~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~ 199 (400)
T KOG0328|consen 124 VQCHACIGGKNLGEDIKKLD----YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPP 199 (400)
T ss_pred ceEEEEecCCccchhhhhhc----ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCC
Confidence 55555555554333322111 3467899998887653 3446666788999999999965 4567788888885
Q ss_pred cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHHH
Q 001197 558 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 637 (1125)
Q Consensus 558 s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~d 637 (1125)
....+++|||- ..|+..+.++..+++.
T Consensus 200 ~~Qvv~~SATl----p~eilemt~kfmtdpv------------------------------------------------- 226 (400)
T KOG0328|consen 200 GAQVVLVSATL----PHEILEMTEKFMTDPV------------------------------------------------- 226 (400)
T ss_pred CceEEEEeccC----cHHHHHHHHHhcCCce-------------------------------------------------
Confidence 67888999994 2344444333333221
Q ss_pred HhhhCCCCeEEEEE-ecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhc
Q 001197 638 VEKYLPGKSQVILK-CDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 716 (1125)
Q Consensus 638 V~~~LP~k~e~vi~-~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S 716 (1125)
...++ -+++-+-.+. |...-+. ..
T Consensus 227 ---------rilvkrdeltlEgIKq------------------------------------f~v~ve~----------Ee 251 (400)
T KOG0328|consen 227 ---------RILVKRDELTLEGIKQ------------------------------------FFVAVEK----------EE 251 (400)
T ss_pred ---------eEEEecCCCchhhhhh------------------------------------heeeech----------hh
Confidence 11111 0111100000 0000000 01
Q ss_pred chHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecccc
Q 001197 717 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 796 (1125)
Q Consensus 717 ~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAG 796 (1125)
=|+..|..+...|. =...+|||+.....|.|.+.+...++.+..+||.++.++|.+++.+|..+.+. +|+||++-
T Consensus 252 wKfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~Sr---vLitTDVw 326 (400)
T KOG0328|consen 252 WKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSR---VLITTDVW 326 (400)
T ss_pred hhHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCce---EEEEechh
Confidence 15555655555542 34689999999999999999999999999999999999999999999999887 79999999
Q ss_pred ccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCC
Q 001197 797 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 846 (1125)
Q Consensus 797 G~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~T 846 (1125)
+.|+++|..+.||+||.|-|+..|++|+||.+|.|.+- .+..|+..+.
T Consensus 327 aRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~d 374 (400)
T KOG0328|consen 327 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSDD 374 (400)
T ss_pred hccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHHH
Confidence 99999999999999999999999999999999999654 4456665443
No 67
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.74 E-value=1.6e-16 Score=181.99 Aligned_cols=340 Identities=19% Similarity=0.252 Sum_probs=217.8
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHc--------cCCCCC-EEEEcCc-ccHHHHHHHH
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN--------KGVTGP-HVIVAPK-AVLPNWINEF 476 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~--------~~~~gp-~LIVvP~-sll~qW~~Ef 476 (1125)
.+-|-|..++--++ ++.+-|...|+|+|||..-+--+...+.. ...-|| .+|++|+ -|..|-..|-
T Consensus 267 eptpIqR~aipl~l----Q~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLGL----QNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccchh----ccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 56778888876444 47778999999999995443222211111 122355 4788899 5666677777
Q ss_pred HhhCC--CceEEEEcCCh-hHHHHHHHHHHhhcCCccEEEecHHHHHHhH--HhhhccCeeEEEEcCCcccCChh--hHH
Q 001197 477 STWAP--SIAAVVYDGRP-DERKAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKNHE--CAL 549 (1125)
Q Consensus 477 ~k~~p--~~~vivy~G~~-~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~--~~L~ki~w~~VIIDEAHriKN~~--Skl 549 (1125)
.+|.- +++++...|.. -+-.-+. -.....++|.|+.-++... .+|-.-.-.+||+|||.+|-... -..
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq~fq-----ls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv 417 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQGFQ-----LSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDV 417 (673)
T ss_pred HHhcccccceEEEEecccchhhhhhh-----hhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHH
Confidence 77752 35555554433 2222111 1156889999999887753 34555577899999999986532 223
Q ss_pred HHHHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhh
Q 001197 550 AKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPF 629 (1125)
Q Consensus 550 skaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pf 629 (1125)
.+.|..+ |..|-- | +.+.+..| .++ ...|
T Consensus 418 ~~iL~~m-----------Pssn~k-----------~----~tde~~~~----------------------~~~---~~~~ 446 (673)
T KOG0333|consen 418 QKILEQM-----------PSSNAK-----------P----DTDEKEGE----------------------ERV---RKNF 446 (673)
T ss_pred HHHHHhC-----------CccccC-----------C----CccchhhH----------------------HHH---Hhhc
Confidence 3333222 211110 0 00011100 011 0111
Q ss_pred hhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhH
Q 001197 630 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRK 709 (1125)
Q Consensus 630 lLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~ 709 (1125)
--. ---.......+.|++.-..+-..++...........++. +|.+-..
T Consensus 447 ~~~---------k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~---------------~~rveQ~------- 495 (673)
T KOG0333|consen 447 SSS---------KKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKP---------------TPRVEQK------- 495 (673)
T ss_pred ccc---------cceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCC---------------ccchheE-------
Confidence 000 000123344566776666665555544332222222221 1111100
Q ss_pred HHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEE
Q 001197 710 EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMF 789 (1125)
Q Consensus 710 ~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~Vf 789 (1125)
-.++..+.|+..|.++|... ....+|||.+....+|.|++.|...||++++|||+-+.++|+.+|..|..+..+ +
T Consensus 496 v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~d---I 570 (673)
T KOG0333|consen 496 VEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGD---I 570 (673)
T ss_pred EEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCC---E
Confidence 01124566888899988875 467899999999999999999999999999999999999999999999998877 7
Q ss_pred EeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeC
Q 001197 790 LLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 844 (1125)
Q Consensus 790 LLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~ 844 (1125)
|++|+++|.||++++.++||.||..-+-..|.++|||.+|-|+.-.+ ..|+|.
T Consensus 571 lVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gta--iSflt~ 623 (673)
T KOG0333|consen 571 LVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTA--ISFLTP 623 (673)
T ss_pred EEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCcee--EEEecc
Confidence 99999999999999999999999999999999999999999977543 344444
No 68
>PRK09401 reverse gyrase; Reviewed
Probab=99.74 E-value=4.5e-16 Score=201.82 Aligned_cols=296 Identities=15% Similarity=0.193 Sum_probs=189.8
Q ss_pred CCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCC
Q 001197 404 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS 482 (1125)
Q Consensus 404 ~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~ 482 (1125)
.|..|.|+|..++..++. +.+.++..++|+|||...+.++.++.. ..+.+|||||+ .|+.||...|.+++..
T Consensus 77 ~G~~pt~iQ~~~i~~il~----g~dv~i~ApTGsGKT~f~l~~~~~l~~---~g~~alIL~PTreLa~Qi~~~l~~l~~~ 149 (1176)
T PRK09401 77 TGSKPWSLQRTWAKRLLL----GESFAIIAPTGVGKTTFGLVMSLYLAK---KGKKSYIIFPTRLLVEQVVEKLEKFGEK 149 (1176)
T ss_pred cCCCCcHHHHHHHHHHHC----CCcEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEEeccHHHHHHHHHHHHHHhhh
Confidence 467999999998876664 778899999999999654443333322 24578999999 8889999999998753
Q ss_pred --ceEEE--EcCC--hhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChh----------
Q 001197 483 --IAAVV--YDGR--PDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHE---------- 546 (1125)
Q Consensus 483 --~~viv--y~G~--~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~---------- 546 (1125)
+.+.+ ++++ ..++......+.. +.++|+|+|++.+.+....+....+++|||||||++-...
T Consensus 150 ~~~~~~~~~g~~~~~~~ek~~~~~~l~~--~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~l 227 (1176)
T PRK09401 150 VGCGVKILYYHSSLKKKEKEEFLERLKE--GDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLL 227 (1176)
T ss_pred cCceEEEEEccCCcchhHHHHHHHHHhc--CCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhC
Confidence 33322 2332 2233333322222 5799999999999987776776779999999999985311
Q ss_pred ----hHHHHHHHccc-------------------------cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHH
Q 001197 547 ----CALAKTISGYQ-------------------------IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEW 597 (1125)
Q Consensus 547 ----SklskaL~~l~-------------------------s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~ 597 (1125)
..+..++..++ ....++.|||.-...+...
T Consensus 228 GF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~--------------------- 286 (1176)
T PRK09401 228 GFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVK--------------------- 286 (1176)
T ss_pred CCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHH---------------------
Confidence 11222222221 1233444555422111100
Q ss_pred hcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCC
Q 001197 598 FNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT 677 (1125)
Q Consensus 598 f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~ 677 (1125)
++..+.. +..+.
T Consensus 287 ---------------------------------------------------------------l~~~ll~-----~~v~~ 298 (1176)
T PRK09401 287 ---------------------------------------------------------------LFRELLG-----FEVGS 298 (1176)
T ss_pred ---------------------------------------------------------------Hhhccce-----EEecC
Confidence 0000000 00000
Q ss_pred CccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchH---HHHHHHHHH
Q 001197 678 GKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRL---MDILEIYLK 754 (1125)
Q Consensus 678 ~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~---ldiLe~~L~ 754 (1125)
. ... ++.+ .|-|+. ...|...|..++..+ +..+||||+.... ++.+..+|.
T Consensus 299 ~-~~~-------~rnI-~~~yi~--------------~~~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~ 352 (1176)
T PRK09401 299 P-VFY-------LRNI-VDSYIV--------------DEDSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLE 352 (1176)
T ss_pred c-ccc-------cCCc-eEEEEE--------------cccHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHH
Confidence 0 000 0000 010110 013555666666554 4579999998777 999999999
Q ss_pred hCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEee----ccccccccCCCC-CCEEEEeCCCC------ChhhHHHH
Q 001197 755 LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS----TRAGGLGLNLQT-ADTVIIFDSDW------NPQMDQQA 823 (1125)
Q Consensus 755 ~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLS----TrAGG~GLNLq~-Ad~VIi~D~~W------NP~~d~QA 823 (1125)
..|+++..++|++ ...+++|.++..+ +|++ |..+++|||++. ..+||+||.|- ....+..+
T Consensus 353 ~~gi~v~~~hg~l-----~~~l~~F~~G~~~---VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~ 424 (1176)
T PRK09401 353 DLGINAELAISGF-----ERKFEKFEEGEVD---VLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFL 424 (1176)
T ss_pred HCCCcEEEEeCcH-----HHHHHHHHCCCCC---EEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHH
Confidence 9999999999999 2346999998866 4555 689999999998 89999999998 66778888
Q ss_pred HhhhcccC
Q 001197 824 EDRAHRIG 831 (1125)
Q Consensus 824 igRahRIG 831 (1125)
++|.-.+-
T Consensus 425 ~~r~~~~~ 432 (1176)
T PRK09401 425 LLRLLSLL 432 (1176)
T ss_pred HHHHHhhc
Confidence 89886443
No 69
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.74 E-value=8.7e-17 Score=183.73 Aligned_cols=310 Identities=20% Similarity=0.278 Sum_probs=201.7
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHc-c---CCCCCEEEEcCc-ccHHHHHHH---HHh
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN-K---GVTGPHVIVAPK-AVLPNWINE---FST 478 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~-~---~~~gp~LIVvP~-sll~qW~~E---f~k 478 (1125)
++-+-|...+.-++. +...+.+.-+|+|||+..+..+..+... + ...--+|||||+ -+..|-..| +-+
T Consensus 104 ~MT~VQ~~ti~pll~----gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLE----GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCccCC----CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 677778777765553 6678889999999998876554443322 1 111236999999 444554444 455
Q ss_pred hCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhc---cCeeEEEEcCCcccCChh--hHHHHHH
Q 001197 479 WAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKK---VQWIYMIVDEGHRLKNHE--CALAKTI 553 (1125)
Q Consensus 479 ~~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~k---i~w~~VIIDEAHriKN~~--SklskaL 553 (1125)
+.++..+.+.-|...-+.... .+ . ...+++|.|+.-+..+...-.. -.-.++|+|||.|+-... --+-+.+
T Consensus 180 ~h~~~~v~~viGG~~~~~e~~-kl-~--k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii 255 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEAD-KL-V--KGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQII 255 (543)
T ss_pred hCCCcceEEEeCCccchHHHH-Hh-h--ccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHH
Confidence 666776666655543332221 11 1 4789999999998776433221 123689999999986532 2344444
Q ss_pred Hccc-cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhh
Q 001197 554 SGYQ-IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 632 (1125)
Q Consensus 554 ~~l~-s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLR 632 (1125)
..++ ....++.|||- ...+.++.. .. +
T Consensus 256 ~~lpk~rqt~LFSAT~-~~kV~~l~~---~~----------------------------------------------L-- 283 (543)
T KOG0342|consen 256 KILPKQRQTLLFSATQ-PSKVKDLAR---GA----------------------------------------------L-- 283 (543)
T ss_pred HhccccceeeEeeCCC-cHHHHHHHH---Hh----------------------------------------------h--
Confidence 4443 33446677772 011111100 00 0
Q ss_pred hhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHH
Q 001197 633 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEI 712 (1125)
Q Consensus 633 R~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~l 712 (1125)
-. ....+.|. +.+... -.. .+.+ -|+.
T Consensus 284 ----------~~-d~~~v~~~--------------------d~~~~~---The---~l~Q----gyvv------------ 310 (543)
T KOG0342|consen 284 ----------KR-DPVFVNVD--------------------DGGERE---THE---RLEQ----GYVV------------ 310 (543)
T ss_pred ----------cC-CceEeecC--------------------CCCCcc---hhh---cccc----eEEe------------
Confidence 00 00001110 000000 000 0111 0111
Q ss_pred HhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEee
Q 001197 713 IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 792 (1125)
Q Consensus 713 i~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLS 792 (1125)
.....+|-+|..+|.+.... .||||||....+...+.+.|.+..+++..|||..++..|.....+|....+. +|+|
T Consensus 311 ~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg---IL~c 386 (543)
T KOG0342|consen 311 APSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG---ILVC 386 (543)
T ss_pred ccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc---eEEe
Confidence 01223466777777776543 8999999999999999999999999999999999999999999999987776 8999
Q ss_pred ccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCC
Q 001197 793 TRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQK 833 (1125)
Q Consensus 793 TrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQk 833 (1125)
|+++++|+|.+..|.||-||||-+|..|++|+||..|-|-+
T Consensus 387 TDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~ 427 (543)
T KOG0342|consen 387 TDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKE 427 (543)
T ss_pred cchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCC
Confidence 99999999999999999999999999999999999997654
No 70
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=7.1e-16 Score=191.19 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=103.6
Q ss_pred hcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecc
Q 001197 715 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 794 (1125)
Q Consensus 715 ~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTr 794 (1125)
...|+..|...+......+.++||||......+.+...|...|+++..++|.+...++..+...|..+ . ++++|.
T Consensus 410 ~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~---VlIATd 484 (790)
T PRK09200 410 LDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--A---VTVATN 484 (790)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--e---EEEEcc
Confidence 45688999999988878899999999999999999999999999999999999888877777776643 2 799999
Q ss_pred ccccccCC---CCCC-----EEEEeCCCCChhhHHHHHhhhcccCCCCcE
Q 001197 795 AGGLGLNL---QTAD-----TVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 836 (1125)
Q Consensus 795 AGG~GLNL---q~Ad-----~VIi~D~~WNP~~d~QAigRahRIGQkk~V 836 (1125)
.+|+|+++ +.+. +||.+|.|-|+..|.|+.||++|.|.+-.+
T Consensus 485 mAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s 534 (790)
T PRK09200 485 MAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSS 534 (790)
T ss_pred chhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeE
Confidence 99999999 4676 999999999999999999999999977543
No 71
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.73 E-value=1e-16 Score=193.17 Aligned_cols=349 Identities=17% Similarity=0.212 Sum_probs=221.5
Q ss_pred CCCCccHHHHHHHHHHHHhhccCCC-eEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCC
Q 001197 404 QGGELRAYQLEGLQWMLSLFNNNLN-GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP 481 (1125)
Q Consensus 404 ~g~~LrpYQ~egv~wml~l~~~~~~-GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p 481 (1125)
....+|+||..+++.+...+.++.+ .+|++.+|+|||.+||++|..|+.... .+.+|+++-- +++.|-..+|..+.|
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~-~KRVLFLaDR~~Lv~QA~~af~~~~P 240 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGW-VKRVLFLADRNALVDQAYGAFEDFLP 240 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcch-hheeeEEechHHHHHHHHHHHHHhCC
Confidence 3468999999999999998766544 678999999999999999999998754 4588999965 889999999999999
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHH-------hhhccCeeEEEEcCCcccCChhhHHHHHHH
Q 001197 482 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ-------YLKKVQWIYMIVDEGHRLKNHECALAKTIS 554 (1125)
Q Consensus 482 ~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~-------~L~ki~w~~VIIDEAHriKN~~SklskaL~ 554 (1125)
....+........- +.+.|+|+||.++..... .+..-.||+||||||||- -.+..+.+-
T Consensus 241 ~~~~~n~i~~~~~~-----------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg---i~~~~~~I~ 306 (875)
T COG4096 241 FGTKMNKIEDKKGD-----------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG---IYSEWSSIL 306 (875)
T ss_pred CccceeeeecccCC-----------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---HHhhhHHHH
Confidence 76554433221110 357899999999976432 244457999999999993 122333554
Q ss_pred ccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhh
Q 001197 555 GYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 634 (1125)
Q Consensus 555 ~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~ 634 (1125)
.|-+..+++|||||-..--..-+.+++ +.|... ++-++. +-..|+
T Consensus 307 dYFdA~~~gLTATP~~~~d~~T~~~F~-----------------g~Pt~~-----YsleeA---------V~DGfL---- 351 (875)
T COG4096 307 DYFDAATQGLTATPKETIDRSTYGFFN-----------------GEPTYA-----YSLEEA---------VEDGFL---- 351 (875)
T ss_pred HHHHHHHHhhccCcccccccccccccC-----------------CCccee-----ecHHHH---------hhcccc----
Confidence 455667788899996532211222111 222111 111110 111111
Q ss_pred HHHHhhhCCCCeEE-EEEecCCH-------HHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccch
Q 001197 635 KDEVEKYLPGKSQV-ILKCDMSA-------WQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNM 706 (1125)
Q Consensus 635 K~dV~~~LP~k~e~-vi~~~ms~-------~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~ 706 (1125)
.|++... .+.++... .+.+.+...... + ++ .+..
T Consensus 352 -------vpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~-----d--------------------d~------~~~~ 393 (875)
T COG4096 352 -------VPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDE-----D--------------------DQ------NFEA 393 (875)
T ss_pred -------CCCCceEEeeeccccCcCcCccchhhhhhccccCc-----c--------------------cc------cccc
Confidence 2332222 22222110 011111110000 0 00 0000
Q ss_pred hhHHHHHhhcchHHHHHHHhHHhhhC---C---CEEEEEeccchHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHH
Q 001197 707 WRKEEIIRASGKFELLDRLLPKLRKS---G---HRVLLFSQMTRLMDILEIYLKLN-----DFKFLRLDGSTKTEERGTL 775 (1125)
Q Consensus 707 ~~~~~li~~S~Kle~L~~lL~kl~~~---g---~KVLIFsq~t~~ldiLe~~L~~~-----gi~~~rLdGsts~~eR~~~ 775 (1125)
...+..+....-.+.+.+.+..+... | .|.||||....+.+.|...|... |-=++.|+|.... =+..
T Consensus 394 ~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~--~q~~ 471 (875)
T COG4096 394 RDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ--AQAL 471 (875)
T ss_pred cccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh--hHHH
Confidence 00000111122234445555444433 3 58999999999999999998643 2235678887654 4668
Q ss_pred HHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhccc-------CCCCc-EEEEEEEe
Q 001197 776 LKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRI-------GQKKE-VRVFVLVS 843 (1125)
Q Consensus 776 I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRI-------GQkk~-V~VyrLIt 843 (1125)
|+.|-. ..++..+.+|....-+|+|.+.|-.+|++-.-.+-..+.|-+||+-|+ ||.|. ..|+.|+-
T Consensus 472 Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~ 546 (875)
T COG4096 472 IDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVD 546 (875)
T ss_pred HHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhhh
Confidence 899987 445566899999999999999999999999999999999999999996 35555 88888874
No 72
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.72 E-value=2.9e-16 Score=195.81 Aligned_cols=308 Identities=24% Similarity=0.231 Sum_probs=199.7
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhC-CCce
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA-PSIA 484 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~-p~~~ 484 (1125)
+|+|.|..+|.-.+. .+.|.|+|.+||+|||++|+.+|...+... .++++.|||+ +|..+-..+|.+|. -+++
T Consensus 31 el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 899999999964433 378899999999999999987766554432 5799999998 88888889999553 2789
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhh--hccCeeEEEEcCCcccCCh-h-----hHHHHHHHcc
Q 001197 485 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL--KKVQWIYMIVDEGHRLKNH-E-----CALAKTISGY 556 (1125)
Q Consensus 485 vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L--~ki~w~~VIIDEAHriKN~-~-----SklskaL~~l 556 (1125)
|.++.|+........ ..++|+|||||.+-.-.... --...++|||||+|.+... . +-.++....-
T Consensus 106 V~~~TgD~~~~~~~l-------~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~ 178 (766)
T COG1204 106 VGISTGDYDLDDERL-------ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN 178 (766)
T ss_pred EEEecCCcccchhhh-------ccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhC
Confidence 999999876443211 68999999999885322211 1125679999999999765 2 2233333222
Q ss_pred ccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHH
Q 001197 557 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 636 (1125)
Q Consensus 557 ~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~ 636 (1125)
..-+.++||||- ++...|..|.+..... ...+|.-++|.
T Consensus 179 ~~~rivgLSATl--------------------pN~~evA~wL~a~~~~-------------------~~~rp~~l~~~-- 217 (766)
T COG1204 179 ELIRIVGLSATL--------------------PNAEEVADWLNAKLVE-------------------SDWRPVPLRRG-- 217 (766)
T ss_pred cceEEEEEeeec--------------------CCHHHHHHHhCCcccc-------------------cCCCCcccccC--
Confidence 235789999993 3444455555432110 00111111110
Q ss_pred HHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhc
Q 001197 637 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 716 (1125)
Q Consensus 637 dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S 716 (1125)
.|... ....+ .+..+ ....
T Consensus 218 -----v~~~~-~~~~~----------------------~~~~k---------------------------------~~~~ 236 (766)
T COG1204 218 -----VPYVG-AFLGA----------------------DGKKK---------------------------------TWPL 236 (766)
T ss_pred -----Cccce-EEEEe----------------------cCccc---------------------------------cccc
Confidence 01000 00000 00000 0011
Q ss_pred chHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHh----C---------------------------------CCe
Q 001197 717 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL----N---------------------------------DFK 759 (1125)
Q Consensus 717 ~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~----~---------------------------------gi~ 759 (1125)
.+...+..++....+.|..||||+++.......+..|.. . -..
T Consensus 237 ~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~G 316 (766)
T COG1204 237 LIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRG 316 (766)
T ss_pred cchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhC
Confidence 122344455555667788999999887655544444441 0 012
Q ss_pred EEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEE-----eC-----CCCChhhHHHHHhhhcc
Q 001197 760 FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII-----FD-----SDWNPQMDQQAEDRAHR 829 (1125)
Q Consensus 760 ~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi-----~D-----~~WNP~~d~QAigRahR 829 (1125)
+...|.+++.++|+-+-+.|+.+... +|+||.....|+||+ |++||| || -+-++..+.|-.|||+|
T Consensus 317 vafHhAGL~~~~R~~vE~~Fr~g~ik---Vlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGR 392 (766)
T COG1204 317 VAFHHAGLPREDRQLVEDAFRKGKIK---VLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGR 392 (766)
T ss_pred ccccccCCCHHHHHHHHHHHhcCCce---EEEechHHhhhcCCc-ceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCC
Confidence 55678889999999999999998766 699999999999988 677776 44 33467888999999999
Q ss_pred cCC
Q 001197 830 IGQ 832 (1125)
Q Consensus 830 IGQ 832 (1125)
.|=
T Consensus 393 Pg~ 395 (766)
T COG1204 393 PGY 395 (766)
T ss_pred CCc
Confidence 984
No 73
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=3.7e-16 Score=181.23 Aligned_cols=318 Identities=22% Similarity=0.295 Sum_probs=205.4
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHH-HHHHHHHccC---------CCCCEEEEcCc-ccHHHHHH
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIA-LIAYLLENKG---------VTGPHVIVAPK-AVLPNWIN 474 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIa-li~~L~e~~~---------~~gp~LIVvP~-sll~qW~~ 474 (1125)
..+.|+|..++.-+. .+.+.+.+..+|+|||..-+- ++.++++... .....||++|+ .|+.|--+
T Consensus 95 ~~ptpvQk~sip~i~----~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 95 TKPTPVQKYSIPIIS----GGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred cCCCcceeeccceee----cCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 478999999996444 477788899999999988754 4556665532 12357999999 78899999
Q ss_pred HHHhhCC--CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHH--hhhccCeeEEEEcCCcccCChhhHHH
Q 001197 475 EFSTWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHECALA 550 (1125)
Q Consensus 475 Ef~k~~p--~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~--~L~ki~w~~VIIDEAHriKN~~Skls 550 (1125)
|..++.- .+..++..|....+...+. ....+|++++|..-+..-.+ .+..-...++|||||.+|-...
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~~q~~~----~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~m---- 242 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLGAQLRF----IKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEM---- 242 (482)
T ss_pred HHHhhcccccceeeeeeCCcchhhhhhh----hccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhc----
Confidence 9999863 3444444444444443332 23789999999998765322 1222233499999999986521
Q ss_pred HHHHcc--ccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhh
Q 001197 551 KTISGY--QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 628 (1125)
Q Consensus 551 kaL~~l--~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~p 628 (1125)
.| .-++.+.-+++|.+++..-+ .|...|. ..+..+..+
T Consensus 243 ----gF~p~Ir~iv~~~~~~~~~~~qt~--------------------mFSAtfp----------------~~iq~l~~~ 282 (482)
T KOG0335|consen 243 ----GFEPQIRKIVEQLGMPPKNNRQTL--------------------LFSATFP----------------KEIQRLAAD 282 (482)
T ss_pred ----cccccHHHHhcccCCCCccceeEE--------------------EEeccCC----------------hhhhhhHHH
Confidence 11 11122222333332221100 0111000 001111111
Q ss_pred hhhhh----hHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCccccccc
Q 001197 629 FILRR----KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEY 704 (1125)
Q Consensus 629 flLRR----~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~ 704 (1125)
|+.-- ....|......-...+++|
T Consensus 283 fl~~~yi~laV~rvg~~~~ni~q~i~~V---------------------------------------------------- 310 (482)
T KOG0335|consen 283 FLKDNYIFLAVGRVGSTSENITQKILFV---------------------------------------------------- 310 (482)
T ss_pred HhhccceEEEEeeeccccccceeEeeee----------------------------------------------------
Confidence 11000 0000000000111111111
Q ss_pred chhhHHHHHhhcchHHHHHHHhHHhhh-------CCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHH
Q 001197 705 NMWRKEEIIRASGKFELLDRLLPKLRK-------SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLK 777 (1125)
Q Consensus 705 ~~~~~~~li~~S~Kle~L~~lL~kl~~-------~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~ 777 (1125)
....|...|.++|..... ..++++||+...+.++.++.+|...++++..++|.-+..+|...++
T Consensus 311 ---------~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~ 381 (482)
T KOG0335|consen 311 ---------NEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALN 381 (482)
T ss_pred ---------cchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHH
Confidence 123344445555544331 1258999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEE
Q 001197 778 QFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 839 (1125)
Q Consensus 778 ~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~Vy 839 (1125)
.|..+..+ +|++|..+..|||+...++||+||.|-+-..|++|+||.+|.|+.--.+.|
T Consensus 382 ~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 382 DFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred HhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEE
Confidence 99998877 699999999999999999999999999999999999999999988654444
No 74
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=3.8e-15 Score=181.36 Aligned_cols=130 Identities=17% Similarity=0.256 Sum_probs=105.6
Q ss_pred hcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecc
Q 001197 715 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 794 (1125)
Q Consensus 715 ~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTr 794 (1125)
...|...|.+++..+...+..|||||......+.+...|...|+++..|+|... +|+..+..|...... ++++|.
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATd 529 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEcc
Confidence 345889999999888777889999999999999999999999999999999865 556666666654444 799999
Q ss_pred ccccccCCC---CCC-----EEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHHH
Q 001197 795 AGGLGLNLQ---TAD-----TVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILER 854 (1125)
Q Consensus 795 AGG~GLNLq---~Ad-----~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~r 854 (1125)
.+|.|+++. .+. +||.||.|-|+..|.|++||++|.|..-.+ +.|+ |.|+.++.+
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s--~~~i---s~eD~l~~~ 592 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSY--EAIL---SLEDDLLQS 592 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEE--EEEe---chhHHHHHh
Confidence 999999998 443 999999999999999999999999966433 3333 345555543
No 75
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.72 E-value=1.2e-15 Score=187.94 Aligned_cols=326 Identities=16% Similarity=0.175 Sum_probs=195.8
Q ss_pred ccCCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHH----------HHH--HccCCCCCEEEEcCc-cc
Q 001197 402 LLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA----------YLL--ENKGVTGPHVIVAPK-AV 468 (1125)
Q Consensus 402 ~l~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~----------~L~--e~~~~~gp~LIVvP~-sl 468 (1125)
-+....|++.|...-+.++..+..+...|+..++|+|||.|.=.++. .+- ......++++|++|. .+
T Consensus 155 ~~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreL 234 (675)
T PHA02653 155 PFSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVAL 234 (675)
T ss_pred ccccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHH
Confidence 34456899999888888888888899999999999999987422221 111 111234589999998 55
Q ss_pred HHHHHHHHHhh-----CCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccC
Q 001197 469 LPNWINEFSTW-----APSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLK 543 (1125)
Q Consensus 469 l~qW~~Ef~k~-----~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriK 543 (1125)
+.|...++.+. +++..+.+..|..... ... ......+++|.|..... ..| .++.+|||||||.+-
T Consensus 235 a~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~--~~~---t~~k~~~Ilv~T~~L~l---~~L--~~v~~VVIDEaHEr~ 304 (675)
T PHA02653 235 VRLHSITLLKSLGFDEIDGSPISLKYGSIPDE--LIN---TNPKPYGLVFSTHKLTL---NKL--FDYGTVIIDEVHEHD 304 (675)
T ss_pred HHHHHHHHHHHhCccccCCceEEEEECCcchH--Hhh---cccCCCCEEEEeCcccc---ccc--ccCCEEEccccccCc
Confidence 67777777653 2334444444433221 100 11134679898854311 112 267899999999986
Q ss_pred ChhhHHHHHHHccc--cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHH
Q 001197 544 NHECALAKTISGYQ--IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRR 621 (1125)
Q Consensus 544 N~~SklskaL~~l~--s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~r 621 (1125)
.....+...++... ....+++|||+-. ....+ ..+|..+..
T Consensus 305 ~~~DllL~llk~~~~~~rq~ILmSATl~~-dv~~l------------------~~~~~~p~~------------------ 347 (675)
T PHA02653 305 QIGDIIIAVARKHIDKIRSLFLMTATLED-DRDRI------------------KEFFPNPAF------------------ 347 (675)
T ss_pred cchhHHHHHHHHhhhhcCEEEEEccCCcH-hHHHH------------------HHHhcCCcE------------------
Confidence 55444433333332 2367999999621 12222 112211100
Q ss_pred HHhhhhhhhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccc
Q 001197 622 LHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFV 701 (1125)
Q Consensus 622 L~~vL~pflLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~ 701 (1125)
+. .. ...+.+..+..+.....+.+...|-
T Consensus 348 ---------I~-I~---grt~~pV~~~yi~~~~~~~~~~~y~-------------------------------------- 376 (675)
T PHA02653 348 ---------VH-IP---GGTLFPISEVYVKNKYNPKNKRAYI-------------------------------------- 376 (675)
T ss_pred ---------EE-eC---CCcCCCeEEEEeecCcccccchhhh--------------------------------------
Confidence 00 00 0001111111111111100000000
Q ss_pred cccchhhHHHHHhhcchHHHHHHHhHHh-hhCCCEEEEEeccchHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHH
Q 001197 702 GEYNMWRKEEIIRASGKFELLDRLLPKL-RKSGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGSTKTEERGTLLKQ 778 (1125)
Q Consensus 702 ~~~~~~~~~~li~~S~Kle~L~~lL~kl-~~~g~KVLIFsq~t~~ldiLe~~L~~~--gi~~~rLdGsts~~eR~~~I~~ 778 (1125)
...|...+ ..+... ...+..+|||+.....++.+...|... ++.+..+||+++.. ++.+++
T Consensus 377 -------------~~~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ 440 (675)
T PHA02653 377 -------------EEEKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEK 440 (675)
T ss_pred -------------HHHHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHH
Confidence 00011111 112211 124568999999999999999999876 79999999999964 567778
Q ss_pred H-cCCCCCceEEEeeccccccccCCCCCCEEEEeC---CC---------CChhhHHHHHhhhcccCCCCcEEEEEEEeCC
Q 001197 779 F-NAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFD---SD---------WNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 845 (1125)
Q Consensus 779 F-n~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D---~~---------WNP~~d~QAigRahRIGQkk~V~VyrLIt~~ 845 (1125)
| ..+.. -+|+||..+++||++.++++||.++ .+ .+...+.||.||++|. ++-.+|+|.++.
T Consensus 441 ff~~gk~---kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~ 514 (675)
T PHA02653 441 VYSSKNP---SIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLD 514 (675)
T ss_pred HhccCce---eEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHH
Confidence 7 44432 3699999999999999999999997 22 2677899999999997 468889999887
Q ss_pred CH
Q 001197 846 SI 847 (1125)
Q Consensus 846 TI 847 (1125)
..
T Consensus 515 ~~ 516 (675)
T PHA02653 515 LL 516 (675)
T ss_pred Hh
Confidence 64
No 76
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=7.7e-16 Score=169.87 Aligned_cols=312 Identities=19% Similarity=0.238 Sum_probs=209.5
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCC--C
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 482 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p--~ 482 (1125)
.++-|.|..++-.++. +.++|=+.-+|+|||..-..-+..-+...+..-=.||++|+ -+..|-.+.|..... +
T Consensus 28 ~~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~ 103 (442)
T KOG0340|consen 28 KKPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLN 103 (442)
T ss_pred CCCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhccccc
Confidence 4678899999988886 88899999999999976443343333332333235999999 556666666765542 4
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHH------hhhccCeeEEEEcCCcccCChhh--HHHHHHH
Q 001197 483 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ------YLKKVQWIYMIVDEGHRLKNHEC--ALAKTIS 554 (1125)
Q Consensus 483 ~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~------~L~ki~w~~VIIDEAHriKN~~S--klskaL~ 554 (1125)
+++.++.|..+.-.. ..... .+++|||+|.+.+..... .+...+..++|+|||.++-+..- .+.-...
T Consensus 104 lK~~vivGG~d~i~q--a~~L~--~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e 179 (442)
T KOG0340|consen 104 LKVSVIVGGTDMIMQ--AAILS--DRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEE 179 (442)
T ss_pred ceEEEEEccHHHhhh--hhhcc--cCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhc
Confidence 666666665443222 11222 678999999998754321 11222556899999999976422 2222223
Q ss_pred cccc-ceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 001197 555 GYQI-QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 633 (1125)
Q Consensus 555 ~l~s-~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR 633 (1125)
-++. +--+++|+|- .+++.++. ..|.....
T Consensus 180 ~lP~~RQtLlfSATi-td~i~ql~---------------------~~~i~k~~--------------------------- 210 (442)
T KOG0340|consen 180 CLPKPRQTLLFSATI-TDTIKQLF---------------------GCPITKSI--------------------------- 210 (442)
T ss_pred cCCCccceEEEEeeh-hhHHHHhh---------------------cCCccccc---------------------------
Confidence 3433 3668999983 23333221 11111000
Q ss_pred hHHHHhhhCCCCeEEEEEe-cCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHH
Q 001197 634 KKDEVEKYLPGKSQVILKC-DMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEI 712 (1125)
Q Consensus 634 ~K~dV~~~LP~k~e~vi~~-~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~l 712 (1125)
-+.+.. +-.+.-..+|+. |++
T Consensus 211 -------------a~~~e~~~~vstvetL~q~---------------------------------yI~------------ 232 (442)
T KOG0340|consen 211 -------------AFELEVIDGVSTVETLYQG---------------------------------YIL------------ 232 (442)
T ss_pred -------------ceEEeccCCCCchhhhhhh---------------------------------eee------------
Confidence 000000 000000111111 111
Q ss_pred HhhcchHHHHHHHhHHhhh-CCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEe
Q 001197 713 IRASGKFELLDRLLPKLRK-SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 791 (1125)
Q Consensus 713 i~~S~Kle~L~~lL~kl~~-~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLL 791 (1125)
+....|-.+|..+|..... ....++||+|.+....+|.-.|...++.+..+|+.+++.+|-..+.+|..+... +|+
T Consensus 233 ~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~---ili 309 (442)
T KOG0340|consen 233 VSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAAR---ILI 309 (442)
T ss_pred cchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCcc---EEE
Confidence 1123455667777777766 567899999999999999999999999999999999999999999999987765 699
Q ss_pred eccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCc
Q 001197 792 STRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 835 (1125)
Q Consensus 792 STrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~ 835 (1125)
+|++++.||++++.+.||+||.|-.|..|++|.||..|-|..-.
T Consensus 310 aTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 310 ATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred EechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 99999999999999999999999999999999999988886643
No 77
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=1.2e-15 Score=175.11 Aligned_cols=118 Identities=25% Similarity=0.387 Sum_probs=94.4
Q ss_pred cchHH--HHHHHhHHhh--hCCCEEEEEeccchHHHHHHHHHHh----------------------CCCeEEEecCCCCH
Q 001197 716 SGKFE--LLDRLLPKLR--KSGHRVLLFSQMTRLMDILEIYLKL----------------------NDFKFLRLDGSTKT 769 (1125)
Q Consensus 716 S~Kle--~L~~lL~kl~--~~g~KVLIFsq~t~~ldiLe~~L~~----------------------~gi~~~rLdGsts~ 769 (1125)
.+|+. .|..+|.... ....|+|||....++.+.=.+.|.. .+.+|++|||+|++
T Consensus 404 PpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~Q 483 (708)
T KOG0348|consen 404 PPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQ 483 (708)
T ss_pred CCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhH
Confidence 44443 3445554433 2355899999988877765554431 24569999999999
Q ss_pred HHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcE
Q 001197 770 EERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 836 (1125)
Q Consensus 770 ~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V 836 (1125)
++|...+..|...... +|+||++++.||+|+..+.||-||+|..|..|++|+||..|+|-+-.-
T Consensus 484 eeRts~f~~Fs~~~~~---VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~a 547 (708)
T KOG0348|consen 484 EERTSVFQEFSHSRRA---VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEA 547 (708)
T ss_pred HHHHHHHHhhccccce---EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCce
Confidence 9999999999875543 799999999999999999999999999999999999999999988663
No 78
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.70 E-value=4.6e-15 Score=172.11 Aligned_cols=85 Identities=19% Similarity=0.217 Sum_probs=71.8
Q ss_pred CCCEEEEEeccchHHHHHHHHHHhCC--CeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEE
Q 001197 732 SGHRVLLFSQMTRLMDILEIYLKLND--FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVI 809 (1125)
Q Consensus 732 ~g~KVLIFsq~t~~ldiLe~~L~~~g--i~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VI 809 (1125)
.+.++||||+....++.+...|...| +.+..++|.++..+|.+.. ... +|++|.+++.|||+.. +.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~~---iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QFD---ILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cCC---EEEEecHHhcccCCCC-ceEE
Confidence 57899999999999999999998764 6788999999999987653 222 7999999999999975 4666
Q ss_pred EeCCCCChhhHHHHHhhhc
Q 001197 810 IFDSDWNPQMDQQAEDRAH 828 (1125)
Q Consensus 810 i~D~~WNP~~d~QAigRah 828 (1125)
++ +-++..|+||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 66 678999999999985
No 79
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.70 E-value=7.7e-16 Score=188.31 Aligned_cols=146 Identities=16% Similarity=0.167 Sum_probs=117.5
Q ss_pred HHHHHhhCCCcccccccchhh----HHHH-HhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEE
Q 001197 688 MQLRKCCNHPYLFVGEYNMWR----KEEI-IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLR 762 (1125)
Q Consensus 688 ~qLRkicnhP~L~~~~~~~~~----~~~l-i~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~r 762 (1125)
..+.++.+-+.+..+...+.. .+.+ .....|+..+.+.+..+...|..|||||.+....+.+...|...|+++..
T Consensus 355 ~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~ 434 (745)
T TIGR00963 355 EEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNV 434 (745)
T ss_pred HHHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEE
Confidence 346666666655544332211 0111 12345888888888888899999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCC-------CCEEEEeCCCCChhhHHHHHhhhcccCCCCc
Q 001197 763 LDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT-------ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 835 (1125)
Q Consensus 763 LdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~-------Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~ 835 (1125)
++|. ..+|+..|..|..+... ++++|..+|+|+++.. .-+||.++.|-|+..+.|+.||++|.|..-.
T Consensus 435 Lna~--q~~rEa~ii~~ag~~g~---VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~ 509 (745)
T TIGR00963 435 LNAK--NHEREAEIIAQAGRKGA---VTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGS 509 (745)
T ss_pred eeCC--hHHHHHHHHHhcCCCce---EEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcc
Confidence 9998 77999999999776554 7999999999999988 5699999999999999999999999998755
Q ss_pred EEE
Q 001197 836 VRV 838 (1125)
Q Consensus 836 V~V 838 (1125)
...
T Consensus 510 s~~ 512 (745)
T TIGR00963 510 SRF 512 (745)
T ss_pred eEE
Confidence 433
No 80
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.70 E-value=2.5e-15 Score=179.54 Aligned_cols=303 Identities=19% Similarity=0.287 Sum_probs=209.1
Q ss_pred CCccHHHHHHHHHHHHhhcc--CCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCccc-HHHHHHHHHhhCC-
Q 001197 406 GELRAYQLEGLQWMLSLFNN--NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV-LPNWINEFSTWAP- 481 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~--~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sl-l~qW~~Ef~k~~p- 481 (1125)
.+|-..|..++.-+..-... ..+-+|-.++|+|||+.|+..+....+.+ .-..+.+|+.+ ..|-...|.+|++
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G---~Q~ALMAPTEILA~QH~~~~~~~l~~ 337 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG---YQAALMAPTEILAEQHYESLRKWLEP 337 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC---CeeEEeccHHHHHHHHHHHHHHHhhh
Confidence 36778999999888764433 23458888999999999987777777654 35688999966 4677888999997
Q ss_pred -CceEEEEcCC--hhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHc-cc
Q 001197 482 -SIAAVVYDGR--PDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG-YQ 557 (1125)
Q Consensus 482 -~~~vivy~G~--~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~-l~ 557 (1125)
++.|....|+ ...|+.....+.+ +..++||-|+..|..... -.+..+|||||=||+.-. ....|.. =.
T Consensus 338 ~~i~V~lLtG~~kgk~r~~~l~~l~~--G~~~ivVGTHALiQd~V~---F~~LgLVIiDEQHRFGV~---QR~~L~~KG~ 409 (677)
T COG1200 338 LGIRVALLTGSLKGKARKEILEQLAS--GEIDIVVGTHALIQDKVE---FHNLGLVIIDEQHRFGVH---QRLALREKGE 409 (677)
T ss_pred cCCeEEEeecccchhHHHHHHHHHhC--CCCCEEEEcchhhhccee---ecceeEEEEeccccccHH---HHHHHHHhCC
Confidence 5777777776 3456666666665 889999999999876433 235679999999998543 2333322 23
Q ss_pred -cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHH
Q 001197 558 -IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 636 (1125)
Q Consensus 558 -s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~ 636 (1125)
..+.|.+|||||.-.+. |- .|++. + -
T Consensus 410 ~~Ph~LvMTATPIPRTLA----lt------~fgDl-----------------d--------------------------v 436 (677)
T COG1200 410 QNPHVLVMTATPIPRTLA----LT------AFGDL-----------------D--------------------------V 436 (677)
T ss_pred CCCcEEEEeCCCchHHHH----HH------Hhccc-----------------c--------------------------c
Confidence 68999999999987653 10 01111 0 0
Q ss_pred HHhhhCCCC-eEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhh
Q 001197 637 EVEKYLPGK-SQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 715 (1125)
Q Consensus 637 dV~~~LP~k-~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~ 715 (1125)
.+.+++|+. ..+.-.|-....-..+|..+.
T Consensus 437 S~IdElP~GRkpI~T~~i~~~~~~~v~e~i~------------------------------------------------- 467 (677)
T COG1200 437 SIIDELPPGRKPITTVVIPHERRPEVYERIR------------------------------------------------- 467 (677)
T ss_pred hhhccCCCCCCceEEEEeccccHHHHHHHHH-------------------------------------------------
Confidence 233457765 222222221111112222221
Q ss_pred cchHHHHHHHhHHhhhCCCEEEEEeccchH--------HHHHHHHHH--hCCCeEEEecCCCCHHHHHHHHHHHcCCCCC
Q 001197 716 SGKFELLDRLLPKLRKSGHRVLLFSQMTRL--------MDILEIYLK--LNDFKFLRLDGSTKTEERGTLLKQFNAPDSP 785 (1125)
Q Consensus 716 S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~--------ldiLe~~L~--~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~ 785 (1125)
.++ ..|+++.+.|.-... ...+...|. +.++.+..+||.|+++++++++.+|+++..+
T Consensus 468 -----------~ei-~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ 535 (677)
T COG1200 468 -----------EEI-AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEID 535 (677)
T ss_pred -----------HHH-HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCc
Confidence 122 246666666664432 222333333 3477899999999999999999999998877
Q ss_pred ceEEEeeccccccccCCCCCCEEEEeCCC-CChhhHHHHHhhhcccCCCCcE
Q 001197 786 YFMFLLSTRAGGLGLNLQTADTVIIFDSD-WNPQMDQQAEDRAHRIGQKKEV 836 (1125)
Q Consensus 786 ~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~-WNP~~d~QAigRahRIGQkk~V 836 (1125)
+|+||-+-.+|+|+++|+.+||.|+. +--++.-|--||++|=+...-|
T Consensus 536 ---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC 584 (677)
T COG1200 536 ---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYC 584 (677)
T ss_pred ---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEE
Confidence 79999999999999999999999998 6789999999999995544443
No 81
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.68 E-value=3.6e-16 Score=161.81 Aligned_cols=154 Identities=27% Similarity=0.414 Sum_probs=110.7
Q ss_pred CCccHHHHHHHHHHHHhhccC---CCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCC
Q 001197 406 GELRAYQLEGLQWMLSLFNNN---LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP 481 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~---~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p 481 (1125)
.+|||||.+++.-++..+... .+++|..+||+|||++++.++..+.. ++|||||. +++.||..+|..+.+
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 379999999999999877654 78899999999999999998888766 79999999 889999999988876
Q ss_pred CceEEEEcCC---hh--------HHHHHHHHHHhhcCCccEEEecHHHHHHhHHh-------------hhccCeeEEEEc
Q 001197 482 SIAAVVYDGR---PD--------ERKAMREEFFSERGRFNVLITHYDLIMRDRQY-------------LKKVQWIYMIVD 537 (1125)
Q Consensus 482 ~~~vivy~G~---~~--------~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~-------------L~ki~w~~VIID 537 (1125)
.......... .. ........ ......+++++||..+...... +....+++||+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 76 EKYNFFEKSIKPAYDSKEFISIQDDISDKSE--SDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIID 153 (184)
T ss_dssp TSEEEEE--GGGCCE-SEEETTTTEEEHHHH--HCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEE
T ss_pred hhhhhcccccccccccccccccccccccccc--cccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEe
Confidence 5544422211 00 00000011 1125778999999999765432 233478999999
Q ss_pred CCcccCChhhHHHHHHHccccceEEEeecCCC
Q 001197 538 EGHRLKNHECALAKTISGYQIQRRLLLTGTPI 569 (1125)
Q Consensus 538 EAHriKN~~SklskaL~~l~s~~RLlLTGTPl 569 (1125)
|||++.+... ++.+..+...++|+|||||.
T Consensus 154 EaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp TGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 9999866543 55554488999999999995
No 82
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.67 E-value=2.5e-16 Score=154.15 Aligned_cols=120 Identities=32% Similarity=0.463 Sum_probs=111.4
Q ss_pred chHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecccc
Q 001197 717 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 796 (1125)
Q Consensus 717 ~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAG 796 (1125)
.|+..+..++.+....+.++||||++...++.+..+|...+..+..++|+++..+|..+++.|+.++. .+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~---~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEI---VVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCC---cEEEEcChh
Confidence 68888889888877678999999999999999999999889999999999999999999999998773 378899999
Q ss_pred ccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEE
Q 001197 797 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 839 (1125)
Q Consensus 797 G~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~Vy 839 (1125)
|+|+|++.+++||+++++|++..+.|++||++|.||...|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998877764
No 83
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=6.1e-15 Score=168.17 Aligned_cols=299 Identities=20% Similarity=0.321 Sum_probs=196.8
Q ss_pred EEEcCCCchHHHHHHHHH-HHHHHc---cCCCCCE-EEEcCc-ccHHHHHHHHHhhCC--CceEE-EEcCChhHHHHHHH
Q 001197 430 ILADEMGLGKTIQTIALI-AYLLEN---KGVTGPH-VIVAPK-AVLPNWINEFSTWAP--SIAAV-VYDGRPDERKAMRE 500 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali-~~L~e~---~~~~gp~-LIVvP~-sll~qW~~Ef~k~~p--~~~vi-vy~G~~~~R~~l~~ 500 (1125)
|=-.-+|+|||-..+--+ .+.+.. ....||+ ||+||+ .+..|-..|.++|+. +++++ +|.|.+.+... .
T Consensus 264 igIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~-k- 341 (731)
T KOG0339|consen 264 IGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQS-K- 341 (731)
T ss_pred hheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHH-H-
Confidence 433458999996655332 333332 3345787 566788 788888899988853 45544 56555543321 1
Q ss_pred HHHhhcCCccEEEecHHHHHHhHHh--hhccCeeEEEEcCCcccCChh--hHHHHHHHcccc-ceEEEeecCCCCCChHH
Q 001197 501 EFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGYQI-QRRLLLTGTPIQNSLQE 575 (1125)
Q Consensus 501 ~~~~~~~~fdVvITTYe~l~kd~~~--L~ki~w~~VIIDEAHriKN~~--SklskaL~~l~s-~~RLlLTGTPlqN~l~E 575 (1125)
.+. ....+||+|++.++..... ..-.+..|+||||+.+|-... .+.......+.+ +..|+.++|-
T Consensus 342 ~Lk---~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf------- 411 (731)
T KOG0339|consen 342 ELK---EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATF------- 411 (731)
T ss_pred hhh---cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccc-------
Confidence 111 4678999999998765321 223467799999999996543 222222344433 3446666662
Q ss_pred HHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHHHHhhhCCCCeEEEEEecCC
Q 001197 576 LWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMS 655 (1125)
Q Consensus 576 L~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~dV~~~LP~k~e~vi~~~ms 655 (1125)
.. ++.++.+.|+ -+.+ .++.....
T Consensus 412 -------------------~~------------------------kIe~lard~L------------~dpV-rvVqg~vg 435 (731)
T KOG0339|consen 412 -------------------KK------------------------KIEKLARDIL------------SDPV-RVVQGEVG 435 (731)
T ss_pred -------------------hH------------------------HHHHHHHHHh------------cCCe-eEEEeehh
Confidence 10 0111111111 1111 11111100
Q ss_pred HHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhcchHHHHHHHhHHhhhCCCE
Q 001197 656 AWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHR 735 (1125)
Q Consensus 656 ~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S~Kle~L~~lL~kl~~~g~K 735 (1125)
. .. .. +.|.--+|- ....|+.+|.+-|..+... .+
T Consensus 436 e-----------------an-----~d----ITQ~V~V~~------------------s~~~Kl~wl~~~L~~f~S~-gk 470 (731)
T KOG0339|consen 436 E-----------------AN-----ED----ITQTVSVCP------------------SEEKKLNWLLRHLVEFSSE-GK 470 (731)
T ss_pred c-----------------cc-----cc----hhheeeecc------------------CcHHHHHHHHHHhhhhccC-Cc
Confidence 0 00 00 000001111 1234777777777776543 48
Q ss_pred EEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCC
Q 001197 736 VLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDW 815 (1125)
Q Consensus 736 VLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~W 815 (1125)
||||..-....+-|+..|...|+.+..++|++.+.+|.+.|.+|+....+ +|+.|+.+.+||++....+||+||.--
T Consensus 471 vlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ar 547 (731)
T KOG0339|consen 471 VLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFAR 547 (731)
T ss_pred EEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCc---eEEEeeHhhcCCCccccceeecccccc
Confidence 99999999999999999999999999999999999999999999998777 699999999999999999999999999
Q ss_pred ChhhHHHHHhhhcccCCCCcEEEEEEEeCCC
Q 001197 816 NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 846 (1125)
Q Consensus 816 NP~~d~QAigRahRIGQkk~V~VyrLIt~~T 846 (1125)
.-..+.|++||.+|-|-+ -..|.|||+.-
T Consensus 548 dIdththrigrtgRag~k--GvayTlvTeKD 576 (731)
T KOG0339|consen 548 DIDTHTHRIGRTGRAGEK--GVAYTLVTEKD 576 (731)
T ss_pred hhHHHHHHhhhccccccc--ceeeEEechhh
Confidence 999999999999999987 56788888654
No 84
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.66 E-value=5.7e-15 Score=191.88 Aligned_cols=279 Identities=17% Similarity=0.225 Sum_probs=177.6
Q ss_pred CCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCC-
Q 001197 405 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS- 482 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~- 482 (1125)
|..|.|+|..++..++. +.+.++..++|+|||..++.++.++... ...+|||+|+ .++.|+...|..++..
T Consensus 76 g~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~l~~~~~l~~~---g~~vLIL~PTreLa~Qi~~~l~~l~~~~ 148 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFGLAMSLFLAKK---GKRCYIILPTTLLVIQVAEKISSLAEKA 148 (1171)
T ss_pred CCCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEeCHHHHHHHHHHHHHHHHHhc
Confidence 45899999999877664 7788899999999998655555444332 3578999999 7789999999998753
Q ss_pred -ce---EEEEcCChhH--HHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhH--------
Q 001197 483 -IA---AVVYDGRPDE--RKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECA-------- 548 (1125)
Q Consensus 483 -~~---vivy~G~~~~--R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~Sk-------- 548 (1125)
+. +.+|+|.... +......+.. +.++|||+|+..+.+....+.. +++++||||||+|-.....
T Consensus 149 ~i~~~~i~~~~Gg~~~~e~~~~~~~l~~--~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~~~k~vd~il~ll 225 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKEKKEFMERIEN--GDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLKASKNVDKLLKLL 225 (1171)
T ss_pred CCceeeeeeecCCCCHHHHHHHHHHHhc--CCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhhccccHHHHHHHc
Confidence 22 2346664322 2222222222 5799999999999887666655 8999999999998542100
Q ss_pred ------HHHHH----------------------Hccccce---EEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHH
Q 001197 549 ------LAKTI----------------------SGYQIQR---RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEW 597 (1125)
Q Consensus 549 ------lskaL----------------------~~l~s~~---RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~ 597 (1125)
+..++ ..++... .++.|||+........+ +. .+++ |
T Consensus 226 GF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l--~r----~ll~----~--- 292 (1171)
T TIGR01054 226 GFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKL--FR----ELLG----F--- 292 (1171)
T ss_pred CCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHH--cc----cccc----e---
Confidence 11111 1111111 23458885433221100 00 0000 0
Q ss_pred hcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCC
Q 001197 598 FNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT 677 (1125)
Q Consensus 598 f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~ 677 (1125)
. |..
T Consensus 293 -----~----------------------------------v~~------------------------------------- 296 (1171)
T TIGR01054 293 -----E----------------------------------VGG------------------------------------- 296 (1171)
T ss_pred -----E----------------------------------ecC-------------------------------------
Confidence 0 000
Q ss_pred CccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccc---hHHHHHHHHHH
Q 001197 678 GKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMT---RLMDILEIYLK 754 (1125)
Q Consensus 678 ~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t---~~ldiLe~~L~ 754 (1125)
.... ++.+ .|.|+. ...+...|.+++..+ +..+|||++.. ..++.|..+|.
T Consensus 297 -~~~~-------~r~I-~~~~~~--------------~~~~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~ 350 (1171)
T TIGR01054 297 -GSDT-------LRNV-VDVYVE--------------DEDLKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLE 350 (1171)
T ss_pred -cccc-------ccce-EEEEEe--------------cccHHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHH
Confidence 0000 0000 000110 001123344555443 56799999998 89999999999
Q ss_pred hCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEee----ccccccccCCCC-CCEEEEeCCCC
Q 001197 755 LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS----TRAGGLGLNLQT-ADTVIIFDSDW 815 (1125)
Q Consensus 755 ~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLS----TrAGG~GLNLq~-Ad~VIi~D~~W 815 (1125)
..|+++..+||.++ +..+++|.++..+ +|++ |..+++|||++. .++||+||.|-
T Consensus 351 ~~g~~a~~lhg~~~----~~~l~~Fr~G~~~---vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 351 NHGVKAVAYHATKP----KEDYEKFAEGEID---VLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred hCCceEEEEeCCCC----HHHHHHHHcCCCC---EEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 99999999999987 3689999998866 4555 589999999999 79999999984
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.66 E-value=6.9e-15 Score=183.23 Aligned_cols=359 Identities=21% Similarity=0.196 Sum_probs=199.3
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCCce
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 484 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~~~ 484 (1125)
..|.++|.+++..+.... .+...+|...+|+|||...+.++...+.. .+.+||+||. .+..||...|.++++ ..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~ 217 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARFG-AP 217 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC-CC
Confidence 479999999999887643 34557889999999999998777666654 3478999999 788999999999885 56
Q ss_pred EEEEcCCh--hHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCC--hhh-----H-HHHHHH
Q 001197 485 AVVYDGRP--DERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN--HEC-----A-LAKTIS 554 (1125)
Q Consensus 485 vivy~G~~--~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN--~~S-----k-lskaL~ 554 (1125)
+.+++|.. .++......... +..+|||+|+..+. +.-.++.+|||||+|...- ... . +.....
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~--g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra 290 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKR--GEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRA 290 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--CCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHh
Confidence 66666643 333332222222 67899999987653 2223678999999998632 111 1 111112
Q ss_pred ccccceEEEeecCCCCCChHHHHH-HhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 001197 555 GYQIQRRLLLTGTPIQNSLQELWS-LLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 633 (1125)
Q Consensus 555 ~l~s~~RLlLTGTPlqN~l~EL~s-LL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR 633 (1125)
.......+++||||....+..... -+.++.+ .+.+..
T Consensus 291 ~~~~~~~il~SATps~~s~~~~~~g~~~~~~l---------~~r~~~--------------------------------- 328 (679)
T PRK05580 291 KLENIPVVLGSATPSLESLANAQQGRYRLLRL---------TKRAGG--------------------------------- 328 (679)
T ss_pred hccCCCEEEEcCCCCHHHHHHHhccceeEEEe---------cccccc---------------------------------
Confidence 335567889999994222111100 0011100 000000
Q ss_pred hHHHHhhhCCCCeEEEEE----------ecCCHHHHHHHHHHH---hhccccc--ccCCCccchHHHHHHHHHHhhCCCc
Q 001197 634 KKDEVEKYLPGKSQVILK----------CDMSAWQKVYYQQVT---DVGRVGL--DTGTGKSKSLQNLSMQLRKCCNHPY 698 (1125)
Q Consensus 634 ~K~dV~~~LP~k~e~vi~----------~~ms~~Q~~lY~~i~---~~~~~~l--~~~~~k~~~l~n~~~qLRkicnhP~ 698 (1125)
..+|.. .++. ..++. .+++.+. +.+...+ -...+-...+ ...-|.+..
T Consensus 329 ------~~~p~v--~~id~~~~~~~~~~~~ls~---~l~~~i~~~l~~g~qvll~~nrrGy~~~~------~C~~Cg~~~ 391 (679)
T PRK05580 329 ------ARLPEV--EIIDMRELLRGENGSFLSP---PLLEAIKQRLERGEQVLLFLNRRGYAPFL------LCRDCGWVA 391 (679)
T ss_pred ------CCCCeE--EEEechhhhhhcccCCCCH---HHHHHHHHHHHcCCeEEEEEcCCCCCCce------EhhhCcCcc
Confidence 001100 0000 01111 1222221 1111000 0000001100 122222222
Q ss_pred ccccc-----cchhhHHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhC--CCeEEEecCCCC--H
Q 001197 699 LFVGE-----YNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGSTK--T 769 (1125)
Q Consensus 699 L~~~~-----~~~~~~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~--gi~~~rLdGsts--~ 769 (1125)
....- +......-.-..+|.-..+...++.+ |.. .|..+..-.+.+++.|... +.++.++||.++ .
T Consensus 392 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C---g~~--~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~ 466 (679)
T PRK05580 392 ECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPEC---GST--DLVPVGPGTERLEEELAELFPEARILRIDRDTTRRK 466 (679)
T ss_pred CCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCC---cCC--eeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccc
Confidence 11100 00000000000001000011111111 111 2333444566677777654 889999999986 4
Q ss_pred HHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCC---CCh---------hhHHHHHhhhcccCCCCcEE
Q 001197 770 EERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSD---WNP---------QMDQQAEDRAHRIGQKKEVR 837 (1125)
Q Consensus 770 ~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~---WNP---------~~d~QAigRahRIGQkk~V~ 837 (1125)
.+++.+++.|.+++.+ +|++|.....|+|++.++.|+++|.| ..| +.+.|+.||++|.|....|.
T Consensus 467 ~~~~~~l~~f~~g~~~---ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~vi 543 (679)
T PRK05580 467 GALEQLLAQFARGEAD---ILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVL 543 (679)
T ss_pred hhHHHHHHHHhcCCCC---EEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEE
Confidence 6799999999998776 68999999999999999999988776 233 67999999999988777776
Q ss_pred EEEEEe
Q 001197 838 VFVLVS 843 (1125)
Q Consensus 838 VyrLIt 843 (1125)
+...-.
T Consensus 544 iqT~~p 549 (679)
T PRK05580 544 IQTYHP 549 (679)
T ss_pred EEeCCC
Confidence 654433
No 86
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.65 E-value=8.8e-16 Score=170.08 Aligned_cols=322 Identities=21% Similarity=0.322 Sum_probs=205.5
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHH-HHHHHHHHc------cCCCCCE-EEEcCcccH-HHHHHHHH
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLEN------KGVTGPH-VIVAPKAVL-PNWINEFS 477 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaI-ali~~L~e~------~~~~gp~-LIVvP~sll-~qW~~Ef~ 477 (1125)
.+.|.|.+|+--+++ +..-|=-.-+|+|||+... -+|...++. ....||+ |||||..-+ .|-..-+.
T Consensus 192 ~PTpIQvQGlPvvLs----GRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVLS----GRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCceeecCcceEee----cCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 567788888865554 4444544569999997743 223322221 1234665 999998444 44333333
Q ss_pred hh--------CCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH--HhhhccCeeEEEEcCCcccCChh-
Q 001197 478 TW--------APSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKNHE- 546 (1125)
Q Consensus 478 k~--------~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~--~~L~ki~w~~VIIDEAHriKN~~- 546 (1125)
.| +|.++....-|.-..+..+... ....+++|.|+..++.-. ..+.---..|+.+|||.||-...
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v----~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGF 343 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLDVV----RRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGF 343 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHHHH----hcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccc
Confidence 33 3566666655655555443221 256889999998876532 22222234589999999986543
Q ss_pred -hHHHHHHHccccc-eEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHh
Q 001197 547 -CALAKTISGYQIQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHH 624 (1125)
Q Consensus 547 -SklskaL~~l~s~-~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~ 624 (1125)
.-.......|++. ..|+.|||- |. ....| ... .
T Consensus 344 Eddir~iF~~FK~QRQTLLFSATM----------------P~---KIQ~F----AkS----------------------A 378 (610)
T KOG0341|consen 344 EDDIRTIFSFFKGQRQTLLFSATM----------------PK---KIQNF----AKS----------------------A 378 (610)
T ss_pred hhhHHHHHHHHhhhhheeeeeccc----------------cH---HHHHH----HHh----------------------h
Confidence 2222333444433 346677773 10 00011 100 0
Q ss_pred hhhhhhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCccccccc
Q 001197 625 VIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEY 704 (1125)
Q Consensus 625 vL~pflLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~ 704 (1125)
+++|. ++.+ +.....++. .+
T Consensus 379 LVKPv-------------------tvNV-----------------------GRAGAAsld-Vi----------------- 398 (610)
T KOG0341|consen 379 LVKPV-------------------TVNV-----------------------GRAGAASLD-VI----------------- 398 (610)
T ss_pred cccce-------------------EEec-----------------------ccccccchh-HH-----------------
Confidence 11111 1110 110111111 11
Q ss_pred chhhHHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCC
Q 001197 705 NMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 784 (1125)
Q Consensus 705 ~~~~~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds 784 (1125)
..-+.+....|+..|.+.|. .+.-+|||||.-..-.|.|..||-..|+..+-|+|+..+++|...|+.|..+..
T Consensus 399 ---QevEyVkqEaKiVylLeCLQ---KT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkK 472 (610)
T KOG0341|consen 399 ---QEVEYVKQEAKIVYLLECLQ---KTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKK 472 (610)
T ss_pred ---HHHHHHHhhhhhhhHHHHhc---cCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCC
Confidence 12233455566666655554 467899999999999999999999999999999999999999999999999887
Q ss_pred CceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHH
Q 001197 785 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVIL 852 (1125)
Q Consensus 785 ~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il 852 (1125)
+ +|+.|++++-||++++..+||+||.|-.-.+|.+++||.+|-|.+- ....||.+++-+..++
T Consensus 473 D---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~G--iATTfINK~~~esvLl 535 (610)
T KOG0341|consen 473 D---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTG--IATTFINKNQEESVLL 535 (610)
T ss_pred c---eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcc--eeeeeecccchHHHHH
Confidence 7 7999999999999999999999999999999999999999998664 3344666665544433
No 87
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.65 E-value=3.1e-14 Score=179.98 Aligned_cols=330 Identities=18% Similarity=0.181 Sum_probs=221.8
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhC---C-
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---P- 481 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~---p- 481 (1125)
.|+.||.++++.+.. +.+.|+.-.||+|||...+..|....-... ....|+|-|+ .|..+..+.|.+|. |
T Consensus 70 ~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l~~~-~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 70 RLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLLRDP-SARALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred cccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHhhCc-CccEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 499999999987765 789999999999999998766654443322 3378999998 66777888888885 4
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHh------HHhhhccCeeEEEEcCCcccCCh-hhHHHHHHH
Q 001197 482 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD------RQYLKKVQWIYMIVDEGHRLKNH-ECALAKTIS 554 (1125)
Q Consensus 482 ~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd------~~~L~ki~w~~VIIDEAHriKN~-~SklskaL~ 554 (1125)
.+.+..|+|........ .+.. .+++||+|+|+++.-. ...+..-.+.+|||||+|-+... .|-++-.++
T Consensus 145 ~v~~~~y~Gdt~~~~r~--~~~~--~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llR 220 (851)
T COG1205 145 KVTFGRYTGDTPPEERR--AIIR--NPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLR 220 (851)
T ss_pred cceeeeecCCCChHHHH--HHHh--CCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHH
Confidence 57788899975433221 1122 7899999999998541 11122224889999999999874 344444444
Q ss_pred cc-------c-cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHh-cccccccCcccCChHHHHHHHHHHHhh
Q 001197 555 GY-------Q-IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWF-NAPFKDRGQVALTDEEQLLIIRRLHHV 625 (1125)
Q Consensus 555 ~l-------~-s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f-~~p~~~~~~~~~~~ee~~~~i~rL~~v 625 (1125)
++ . ....++.|||- ++...|.+.+ ...|.... +
T Consensus 221 RL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~~~v----~-------------- 262 (851)
T COG1205 221 RLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFEVPV----D-------------- 262 (851)
T ss_pred HHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcceeec----c--------------
Confidence 43 2 34557888883 2233332222 21111100 0
Q ss_pred hhhhhhhhhHHHHhhhCCCCeE-EEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCccccccc
Q 001197 626 IRPFILRRKKDEVEKYLPGKSQ-VILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEY 704 (1125)
Q Consensus 626 L~pflLRR~K~dV~~~LP~k~e-~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~ 704 (1125)
..--|.-.. .+++-+........
T Consensus 263 -------------~~g~~~~~~~~~~~~p~~~~~~~~------------------------------------------- 286 (851)
T COG1205 263 -------------EDGSPRGLRYFVRREPPIRELAES------------------------------------------- 286 (851)
T ss_pred -------------CCCCCCCceEEEEeCCcchhhhhh-------------------------------------------
Confidence 000111111 11111111000000
Q ss_pred chhhHHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHH----HHHHhCC----CeEEEecCCCCHHHHHHHH
Q 001197 705 NMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILE----IYLKLND----FKFLRLDGSTKTEERGTLL 776 (1125)
Q Consensus 705 ~~~~~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe----~~L~~~g----i~~~rLdGsts~~eR~~~I 776 (1125)
....+...+..++..+...|-+.|+|+.+...+..+. ..+...+ ..+..+.|++...+|..+.
T Consensus 287 ---------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie 357 (851)
T COG1205 287 ---------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIE 357 (851)
T ss_pred ---------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHH
Confidence 0123445566677777788999999999999988885 3334444 5688899999999999999
Q ss_pred HHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCC-ChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHH
Q 001197 777 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILE 853 (1125)
Q Consensus 777 ~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~W-NP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~ 853 (1125)
..|+.++.. ++++|.|.-+|+++.+.|.||..--|- .-..+.|+.||++|-||.-. ++...-.+.++..++.
T Consensus 358 ~~~~~g~~~---~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l--~~~v~~~~~~d~yy~~ 430 (851)
T COG1205 358 AEFKEGELL---GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESL--VLVVLRSDPLDSYYLR 430 (851)
T ss_pred HHHhcCCcc---EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCce--EEEEeCCCccchhhhh
Confidence 999998876 899999999999999999999999998 78999999999999995543 3333336667766654
No 88
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.64 E-value=2e-14 Score=165.50 Aligned_cols=330 Identities=18% Similarity=0.261 Sum_probs=218.1
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHH-HHHHHccCC--CC-CEEEEcCc-ccHHHHHHHHHhhC-
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALI-AYLLENKGV--TG-PHVIVAPK-AVLPNWINEFSTWA- 480 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali-~~L~e~~~~--~g-p~LIVvP~-sll~qW~~Ef~k~~- 480 (1125)
.+.+.|...+-..+. +...|-|.-+|+|||+..+.-+ ..|+..+-. .| -+|||.|+ -+..|--.-+.+..
T Consensus 91 ~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred cHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 677788888866664 5556668999999998865443 445443311 11 36999999 55555555555443
Q ss_pred -CCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH---HhhhccCeeEEEEcCCcccCChhh--HHHHHHH
Q 001197 481 -PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR---QYLKKVQWIYMIVDEGHRLKNHEC--ALAKTIS 554 (1125)
Q Consensus 481 -p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~---~~L~ki~w~~VIIDEAHriKN~~S--klskaL~ 554 (1125)
.++..-+.-|..+.... ...+ ...+|+|||+..+..+. ..|......++|+|||.||-.+.- .+-..+.
T Consensus 167 ~h~fSaGLiiGG~~~k~E-~eRi----~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~ 241 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVKFE-LERI----SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIE 241 (758)
T ss_pred ccccccceeecCchhHHH-HHhh----hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHH
Confidence 23343333443332211 1111 57889999999997754 446666788999999999976543 3444456
Q ss_pred ccc-cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 001197 555 GYQ-IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 633 (1125)
Q Consensus 555 ~l~-s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR 633 (1125)
.++ .+..|+.|||+. +++.+|.-| ++-+|.+..
T Consensus 242 ~lP~~RQTLLFSATqt-~svkdLaRL-sL~dP~~vs-------------------------------------------- 275 (758)
T KOG0343|consen 242 NLPKKRQTLLFSATQT-KSVKDLARL-SLKDPVYVS-------------------------------------------- 275 (758)
T ss_pred hCChhheeeeeecccc-hhHHHHHHh-hcCCCcEEE--------------------------------------------
Confidence 664 456699999984 445554332 122222111
Q ss_pred hHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHH
Q 001197 634 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 713 (1125)
Q Consensus 634 ~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li 713 (1125)
+... . ...... .|++. |+. +
T Consensus 276 ----------------vhe~---------------a---------~~atP~----~L~Q~----y~~------------v 295 (758)
T KOG0343|consen 276 ----------------VHEN---------------A---------VAATPS----NLQQS----YVI------------V 295 (758)
T ss_pred ----------------Eecc---------------c---------cccChh----hhhhe----EEE------------E
Confidence 0000 0 000000 01100 111 0
Q ss_pred hhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHh--CCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEe
Q 001197 714 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL--NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 791 (1125)
Q Consensus 714 ~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~--~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLL 791 (1125)
....|+.+|...+... ...|.|||.........+...|.. .|++..-|+|.+++..|..+..+|..... ++|+
T Consensus 296 ~l~~Ki~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~---~vLF 370 (758)
T KOG0343|consen 296 PLEDKIDMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRA---VVLF 370 (758)
T ss_pred ehhhHHHHHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcc---eEEE
Confidence 1223566666666543 246899999998888888776653 49999999999999999999999987433 5899
Q ss_pred eccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHh
Q 001197 792 STRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKM 859 (1125)
Q Consensus 792 STrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~r~~~Kl 859 (1125)
||+.++.||+.+..|.||-+|.|-+...|++|.||..|.+..-+..+|- .-|-+|.++.+++.|.
T Consensus 371 ~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L---~psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 371 CTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLML---TPSEEEAMLKKLQKKK 435 (758)
T ss_pred eehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEE---cchhHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999776655443 2455689998888775
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=5.5e-14 Score=169.62 Aligned_cols=128 Identities=21% Similarity=0.175 Sum_probs=88.8
Q ss_pred EEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCCceEEEEcCCh--hHHHHHHHHHHhhcC
Q 001197 431 LADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRP--DERKAMREEFFSERG 507 (1125)
Q Consensus 431 LADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~~~vivy~G~~--~~R~~l~~~~~~~~~ 507 (1125)
|...+|+|||...+.++...+.. .+.+|||+|. ++..|+...|.+.++ ..+.++++.. .+|........ .+
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er~~~~~~~~--~g 75 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEKLQAWRKVK--NG 75 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHHHHHHHHHH--cC
Confidence 55689999999998888777654 3468999999 788999999998874 4556666643 33433333332 26
Q ss_pred CccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccC--ChhhH------HHHHHHccccceEEEeecCCC
Q 001197 508 RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLK--NHECA------LAKTISGYQIQRRLLLTGTPI 569 (1125)
Q Consensus 508 ~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriK--N~~Sk------lskaL~~l~s~~RLlLTGTPl 569 (1125)
..+|||+|...+.. .-.++.+|||||.|... ..... +......+.....+++||||.
T Consensus 76 ~~~IVVGTrsalf~-----p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs 140 (505)
T TIGR00595 76 EILVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS 140 (505)
T ss_pred CCCEEECChHHHcC-----cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 78999999987642 23367899999999863 22211 222223445677899999995
No 90
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.64 E-value=9.7e-15 Score=168.18 Aligned_cols=346 Identities=21% Similarity=0.277 Sum_probs=209.3
Q ss_pred CCeEEEcCCCchHHHHH-HHHHHHHHHcc------------CCCCCEEEEcCc-ccHHHHHHHHHhhC--CCceEEEEcC
Q 001197 427 LNGILADEMGLGKTIQT-IALIAYLLENK------------GVTGPHVIVAPK-AVLPNWINEFSTWA--PSIAAVVYDG 490 (1125)
Q Consensus 427 ~~GILADEMGLGKTiqa-Iali~~L~e~~------------~~~gp~LIVvP~-sll~qW~~Ef~k~~--p~~~vivy~G 490 (1125)
...|=|.|+|+|||+.. |-++..+.+.. ....-.|||+|+ -|..|-...|...+ +.+++....|
T Consensus 220 ~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~G 299 (731)
T KOG0347|consen 220 VDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITG 299 (731)
T ss_pred hhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeec
Confidence 34455899999999874 44444232211 111126999999 67788888888765 4677887877
Q ss_pred ChhHHHHHHHHHHhhcCCccEEEecHHHHH----HhHHhhhcc-CeeEEEEcCCccc--CChhhHHHHHHHccc------
Q 001197 491 RPDERKAMREEFFSERGRFNVLITHYDLIM----RDRQYLKKV-QWIYMIVDEGHRL--KNHECALAKTISGYQ------ 557 (1125)
Q Consensus 491 ~~~~R~~l~~~~~~~~~~fdVvITTYe~l~----kd~~~L~ki-~w~~VIIDEAHri--KN~~SklskaL~~l~------ 557 (1125)
.-...++.+ +.+ ..++|||.|++.+. .+..++..+ +..++||||+.|| +++-.-+++.|..+.
T Consensus 300 GLavqKQqR--lL~--~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~ 375 (731)
T KOG0347|consen 300 GLAVQKQQR--LLN--QRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNR 375 (731)
T ss_pred hhHHHHHHH--HHh--cCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhccc
Confidence 755544332 233 47899999987653 233335544 5679999999999 444445555554442
Q ss_pred cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHHH
Q 001197 558 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 637 (1125)
Q Consensus 558 s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~d 637 (1125)
-..-++.|||-- |..-. |..........+.+....+++|.+.+. +|
T Consensus 376 qrQTlVFSATlt------------~~~~~--------------~~~~~~k~~~k~~~~~~kiq~Lmk~ig---~~----- 421 (731)
T KOG0347|consen 376 QRQTLVFSATLT------------LVLQQ--------------PLSSSRKKKDKEDELNAKIQHLMKKIG---FR----- 421 (731)
T ss_pred ccceEEEEEEee------------hhhcC--------------hhHHhhhccchhhhhhHHHHHHHHHhC---cc-----
Confidence 223477777731 11000 000000000001111111222222111 11
Q ss_pred HhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhcc
Q 001197 638 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 717 (1125)
Q Consensus 638 V~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S~ 717 (1125)
=+|+ + +++++.+.. ...+..-+-.|+ | +- .++..
T Consensus 422 ----~kpk---i--iD~t~q~~t-----------------------a~~l~Es~I~C~-~-~e-KD~yl----------- 455 (731)
T KOG0347|consen 422 ----GKPK---I--IDLTPQSAT-----------------------ASTLTESLIECP-P-LE-KDLYL----------- 455 (731)
T ss_pred ----CCCe---e--EecCcchhH-----------------------HHHHHHHhhcCC-c-cc-cceeE-----------
Confidence 1111 1 222221111 111111222231 1 10 01000
Q ss_pred hHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccc
Q 001197 718 KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 797 (1125)
Q Consensus 718 Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG 797 (1125)
.-+ +..-..|.||||+..+....|.-+|...+++.+.||.+|.+.+|-+.+++|....+. +||+|++++
T Consensus 456 -----yYf---l~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~---VLiaTDVAA 524 (731)
T KOG0347|consen 456 -----YYF---LTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSG---VLIATDVAA 524 (731)
T ss_pred -----EEE---EeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCe---EEEeehhhh
Confidence 000 112245899999999999999999999999999999999999999999999985554 799999999
Q ss_pred cccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeC---------------------CCHHHHHHHHHH
Q 001197 798 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV---------------------GSIEEVILERAK 856 (1125)
Q Consensus 798 ~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~---------------------~TIEE~Il~r~~ 856 (1125)
+||++++.++||+|..|-+...|++|-||..|-+.. -|.|. ||.. -.|++.|+..+.
T Consensus 525 RGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~-Gvsvm-l~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lk 602 (731)
T KOG0347|consen 525 RGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSE-GVSVM-LCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALK 602 (731)
T ss_pred ccCCCCCcceEEEeecCCccceeEecccccccccCC-CeEEE-EeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHH
Confidence 999999999999999999999999999999997632 23332 2222 235788888888
Q ss_pred HHhhHHHHHHhcC
Q 001197 857 QKMGIDAKVIQAG 869 (1125)
Q Consensus 857 ~Kl~l~~~VI~~g 869 (1125)
..-.|+..+-..+
T Consensus 603 eRvrLA~ei~~~e 615 (731)
T KOG0347|consen 603 ERVRLAREIDKLE 615 (731)
T ss_pred HHHHHHHHHHHhh
Confidence 8777777665433
No 91
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.63 E-value=4.1e-14 Score=178.19 Aligned_cols=107 Identities=18% Similarity=0.161 Sum_probs=92.4
Q ss_pred CCEEEEEeccchHHHHHHHHHHh---CCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEE
Q 001197 733 GHRVLLFSQMTRLMDILEIYLKL---NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVI 809 (1125)
Q Consensus 733 g~KVLIFsq~t~~ldiLe~~L~~---~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VI 809 (1125)
+..+|||++.....+.+...|.. .++.++.++|+++.++|..+++.|..+... +|+||..++.||++.++++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rk---VlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRK---VVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeE---EEEecchHhhcccccCceEEE
Confidence 56799999999999989888876 489999999999999999999999876543 699999999999999999999
Q ss_pred EeCCC----CChhh--------------HHHHHhhhcccCCCCcEEEEEEEeCC
Q 001197 810 IFDSD----WNPQM--------------DQQAEDRAHRIGQKKEVRVFVLVSVG 845 (1125)
Q Consensus 810 i~D~~----WNP~~--------------d~QAigRahRIGQkk~V~VyrLIt~~ 845 (1125)
.++.+ +||.. +.||.||++|. ++-.+|+|+++.
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 99875 45554 78999999997 566789998864
No 92
>PRK09694 helicase Cas3; Provisional
Probab=99.62 E-value=4.7e-14 Score=177.87 Aligned_cols=332 Identities=17% Similarity=0.149 Sum_probs=190.6
Q ss_pred CCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHh----h
Q 001197 405 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFST----W 479 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k----~ 479 (1125)
+..++|+|..+..- ..++...||-.+||.|||..++.++..+..... .+.+++..|. .+..+-...+.. .
T Consensus 284 ~~~p~p~Q~~~~~~----~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~-~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 284 GYQPRQLQTLVDAL----PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL-ADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCCChHHHHHHHhh----ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-CCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 56899999977432 123445689999999999999998887776433 4568888898 556666665554 4
Q ss_pred CCCceEEEEcCChhHHHHH-------------------HHHHHhhc-C---CccEEEecHHHHHHhH-----Hhhh--cc
Q 001197 480 APSIAAVVYDGRPDERKAM-------------------REEFFSER-G---RFNVLITHYDLIMRDR-----QYLK--KV 529 (1125)
Q Consensus 480 ~p~~~vivy~G~~~~R~~l-------------------~~~~~~~~-~---~fdVvITTYe~l~kd~-----~~L~--ki 529 (1125)
++...+.+.||........ ...|+... . -.+|+|+|.+.+..-. ..+. .+
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L 438 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL 438 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh
Confidence 4555677777654321110 01233210 1 1479999998887421 1111 22
Q ss_pred CeeEEEEcCCcccCChhhHH-HHHHHcc--ccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccC
Q 001197 530 QWIYMIVDEGHRLKNHECAL-AKTISGY--QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRG 606 (1125)
Q Consensus 530 ~w~~VIIDEAHriKN~~Skl-skaL~~l--~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~ 606 (1125)
.-.+|||||+|-+=.....+ ...|..+ .....++||||+-..-..+|... |...
T Consensus 439 a~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a------------------~~~~----- 495 (878)
T PRK09694 439 GRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDT------------------YGGH----- 495 (878)
T ss_pred ccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHH------------------hccc-----
Confidence 34589999999984433332 3333332 24568999999722111111110 0000
Q ss_pred cccCChHHHHHHHHHHHhhhhhhhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHH
Q 001197 607 QVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNL 686 (1125)
Q Consensus 607 ~~~~~~ee~~~~i~rL~~vL~pflLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~ 686 (1125)
. +. ......|-.. .+. .. .. ....
T Consensus 496 -~-------------------~~-------~~~~~YPlvt----~~~--~~------~~---~~~~-------------- 519 (878)
T PRK09694 496 -D-------------------PV-------ELSSAYPLIT----WRG--VN------GA---QRFD-------------- 519 (878)
T ss_pred -c-------------------cc-------cccccccccc----ccc--cc------cc---eeee--------------
Confidence 0 00 0000001000 000 00 00 0000
Q ss_pred HHHHHHhhCCCccccc----ccchhhHHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCC---Ce
Q 001197 687 SMQLRKCCNHPYLFVG----EYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLND---FK 759 (1125)
Q Consensus 687 ~~qLRkicnhP~L~~~----~~~~~~~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~g---i~ 759 (1125)
+..|+..... ...... +........++..++.. ...|.+|||||+.+..+..+...|...+ ++
T Consensus 520 ------~~~~~~~~~~~~~v~v~~~~---~~~~~~~~~~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~ 589 (878)
T PRK09694 520 ------LSAHPEQLPARFTIQLEPIC---LADMLPDLTLLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVD 589 (878)
T ss_pred ------ccccccccCcceEEEEEeec---cccccCHHHHHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCce
Confidence 0000000000 000000 00001112334444433 3568999999999999999999998654 68
Q ss_pred EEEecCCCCHHHH----HHHHHHH-cCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCC
Q 001197 760 FLRLDGSTKTEER----GTLLKQF-NAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQK 833 (1125)
Q Consensus 760 ~~rLdGsts~~eR----~~~I~~F-n~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQk 833 (1125)
+..+||.++..+| .++++.| +++..+...+|++|.+...|||+ .+|.||....| ...++|++||+||.|.+
T Consensus 590 v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 590 IDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9999999999999 5678899 44332223479999999999999 68988887665 56899999999999874
No 93
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.61 E-value=8.3e-13 Score=145.79 Aligned_cols=314 Identities=18% Similarity=0.216 Sum_probs=212.6
Q ss_pred CccCCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhh
Q 001197 401 TLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTW 479 (1125)
Q Consensus 401 ~~l~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~ 479 (1125)
.+-.+|+|-|+|..+.+.++....+....|+..-+|.|||-+....|.+.+..+ +.++|..|- .++..-...+..-
T Consensus 91 ~L~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G---~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 91 VLQWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG---GRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred eeeeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC---CeEEEecCcccchHHHHHHHHHh
Confidence 445689999999999999999999999999999999999999888888877754 678888897 7777777888888
Q ss_pred CCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccC-ChhhHHHHHHHcc--
Q 001197 480 APSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLK-NHECALAKTISGY-- 556 (1125)
Q Consensus 480 ~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriK-N~~SklskaL~~l-- 556 (1125)
|++..+.+.+|..... ....+||+|-..+.+-.. .||++||||+.-+- ..+-.+..+++.-
T Consensus 168 F~~~~I~~Lyg~S~~~-----------fr~plvVaTtHQLlrFk~-----aFD~liIDEVDAFP~~~d~~L~~Av~~ark 231 (441)
T COG4098 168 FSNCDIDLLYGDSDSY-----------FRAPLVVATTHQLLRFKQ-----AFDLLIIDEVDAFPFSDDQSLQYAVKKARK 231 (441)
T ss_pred hccCCeeeEecCCchh-----------ccccEEEEehHHHHHHHh-----hccEEEEeccccccccCCHHHHHHHHHhhc
Confidence 8888887777765432 123466666665555333 68999999999862 2223455555332
Q ss_pred ccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHH
Q 001197 557 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 636 (1125)
Q Consensus 557 ~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~ 636 (1125)
.....+.|||||-..=..++ .. +... ...+..|.|.
T Consensus 232 ~~g~~IylTATp~k~l~r~~----------------------~~-----g~~~-----~~klp~RfH~------------ 267 (441)
T COG4098 232 KEGATIYLTATPTKKLERKI----------------------LK-----GNLR-----ILKLPARFHG------------ 267 (441)
T ss_pred ccCceEEEecCChHHHHHHh----------------------hh-----CCee-----EeecchhhcC------------
Confidence 45678999999931100000 00 0000 0000011111
Q ss_pred HHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhc
Q 001197 637 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 716 (1125)
Q Consensus 637 dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S 716 (1125)
..|| ....+++.. +.+.+ .-
T Consensus 268 ---~pLp--vPkf~w~~~----------------------------~~k~l---------------------------~r 287 (441)
T COG4098 268 ---KPLP--VPKFVWIGN----------------------------WNKKL---------------------------QR 287 (441)
T ss_pred ---CCCC--CCceEEecc----------------------------HHHHh---------------------------hh
Confidence 1122 111222210 00110 01
Q ss_pred chHH-HHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeec
Q 001197 717 GKFE-LLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 793 (1125)
Q Consensus 717 ~Kle-~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~--gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLST 793 (1125)
.|+. .|.++|++.+.+|..++||.....+++.+...|+.. ......++..+ ..|.+.+..|.++..+ +|++|
T Consensus 288 ~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~---lLiTT 362 (441)
T COG4098 288 NKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKIT---LLITT 362 (441)
T ss_pred ccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceE---EEEEe
Confidence 1222 577888888899999999999999999999988432 23334555543 4799999999998765 89999
Q ss_pred cccccccCCCCCCEEEEeCCC--CChhhHHHHHhhhcccCCCCcEEEEEEE
Q 001197 794 RAGGLGLNLQTADTVIIFDSD--WNPQMDQQAEDRAHRIGQKKEVRVFVLV 842 (1125)
Q Consensus 794 rAGG~GLNLq~Ad~VIi~D~~--WNP~~d~QAigRahRIGQkk~V~VyrLI 842 (1125)
....+|+..+..|++|+=.-. ++-+...|--||++|--..-.-.|+.|-
T Consensus 363 TILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 363 TILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred ehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 999999999999999985444 8899999999999997655444444443
No 94
>PRK14701 reverse gyrase; Provisional
Probab=99.61 E-value=9.6e-14 Score=184.08 Aligned_cols=333 Identities=16% Similarity=0.218 Sum_probs=186.2
Q ss_pred CCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCC--
Q 001197 405 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-- 481 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p-- 481 (1125)
|.++++.|..++..++. +.+.++..+||+|||...+.++..+.. ....+|||+|+ .|+.|....|..++.
T Consensus 77 G~~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 55799999999987775 677889999999999843332222221 12368999999 778899999988764
Q ss_pred --CceEEEEcCChhHHHH--HHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHH--c
Q 001197 482 --SIAAVVYDGRPDERKA--MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTIS--G 555 (1125)
Q Consensus 482 --~~~vivy~G~~~~R~~--l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~--~ 555 (1125)
.+.+..++|....... ....+.. +.++|+|+|.+.+......+...+++++||||||+|-...-..-+.|. .
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~l~~--g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L~llG 227 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLERIEN--GDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSLQLLG 227 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhhhcCC
Confidence 3566667766433222 2222222 679999999998876655444467999999999998431100000010 1
Q ss_pred cccceEE----EeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccC--cccCChHHHHHHHHHHHhhhhhh
Q 001197 556 YQIQRRL----LLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRG--QVALTDEEQLLIIRRLHHVIRPF 629 (1125)
Q Consensus 556 l~s~~RL----lLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~--~~~~~~ee~~~~i~rL~~vL~pf 629 (1125)
|.....- ++.-.+..+ ..++|..+..+... ...+ |..... ....|.......+..++..+
T Consensus 228 F~~e~~~~~~~il~~~~~~~-~~~~~~~~~~l~~~--------~~~~--~~~~~~ll~~SAT~~~r~~~~~l~~~~l--- 293 (1638)
T PRK14701 228 FYEEIIEKAWKIIYLKKQGN-IEDAMEKREILNKE--------IEKI--GNKIGCLIVASATGKAKGDRVKLYRELL--- 293 (1638)
T ss_pred ChHHHHHHHHHhhhcccccc-cchhhhhhhhhhhh--------hhhc--CCCccEEEEEecCCCchhHHHHHhhcCe---
Confidence 1000000 000000000 11111111111000 0000 000000 00000000000000000000
Q ss_pred hhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhH
Q 001197 630 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRK 709 (1125)
Q Consensus 630 lLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~ 709 (1125)
.+.+. .. ... ++.+ .|.|+...
T Consensus 294 -------------------~f~v~-----------------------~~-~~~-------lr~i-~~~yi~~~------- 315 (1638)
T PRK14701 294 -------------------GFEVG-----------------------SG-RSA-------LRNI-VDVYLNPE------- 315 (1638)
T ss_pred -------------------EEEec-----------------------CC-CCC-------CCCc-EEEEEECC-------
Confidence 00000 00 000 0000 01111100
Q ss_pred HHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchH---HHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCc
Q 001197 710 EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRL---MDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPY 786 (1125)
Q Consensus 710 ~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~---ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~ 786 (1125)
...| ..|.+++..+ |..+||||+.... ++.+..+|...|+++..++|. |...+++|.+++.+
T Consensus 316 -----~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~- 380 (1638)
T PRK14701 316 -----KIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEID- 380 (1638)
T ss_pred -----HHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCC-
Confidence 0002 3455566544 5689999998764 589999999999999999994 89999999998876
Q ss_pred eEEEeec----cccccccCCCC-CCEEEEeCCCC---ChhhHHHH-------------HhhhcccCCCCc
Q 001197 787 FMFLLST----RAGGLGLNLQT-ADTVIIFDSDW---NPQMDQQA-------------EDRAHRIGQKKE 835 (1125)
Q Consensus 787 ~VfLLST----rAGG~GLNLq~-Ad~VIi~D~~W---NP~~d~QA-------------igRahRIGQkk~ 835 (1125)
+|++| ..+++|||++. ..+||+||.|- |...+.|. .+|+.|-|..-+
T Consensus 381 --VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~ 448 (1638)
T PRK14701 381 --YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIE 448 (1638)
T ss_pred --EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcch
Confidence 57777 47889999998 99999999998 66555554 499999997533
No 95
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.61 E-value=2e-14 Score=167.55 Aligned_cols=321 Identities=19% Similarity=0.241 Sum_probs=212.8
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCC---C
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP---S 482 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p---~ 482 (1125)
.+-+.|..++-..+. +..-|+-.-.|+|||+....++..-+......--.+||+|+ -+.-|-...|.+.+| +
T Consensus 47 ~ptkiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g 122 (980)
T KOG4284|consen 47 LPTKIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTG 122 (980)
T ss_pred CCCchhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccC
Confidence 556778888865554 66678989999999987543333323222333356999999 556677788888877 4
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH--HhhhccCeeEEEEcCCcccCChhh---HHHHHHHcc-
Q 001197 483 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKNHEC---ALAKTISGY- 556 (1125)
Q Consensus 483 ~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~--~~L~ki~w~~VIIDEAHriKN~~S---klskaL~~l- 556 (1125)
+++.+|-|.......... + ....|+|-|++.+.... ..+..-+..++|+|||..+-...+ .....+..+
T Consensus 123 ~~csvfIGGT~~~~d~~r-l----k~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP 197 (980)
T KOG4284|consen 123 ARCSVFIGGTAHKLDLIR-L----KQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLP 197 (980)
T ss_pred cceEEEecCchhhhhhhh-h----hhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcc
Confidence 678787766543322211 1 45679999999886643 345556788999999999865433 445555666
Q ss_pred ccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhh-hhhhhhhH
Q 001197 557 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIR-PFILRRKK 635 (1125)
Q Consensus 557 ~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~-pflLRR~K 635 (1125)
..+..++.|||-- .+|.++ |.++++ |.++|-..
T Consensus 198 ~~rQv~a~SATYp-~nLdn~---------------------------------------------Lsk~mrdp~lVr~n~ 231 (980)
T KOG4284|consen 198 QIRQVAAFSATYP-RNLDNL---------------------------------------------LSKFMRDPALVRFNA 231 (980)
T ss_pred hhheeeEEeccCc-hhHHHH---------------------------------------------HHHHhcccceeeccc
Confidence 3456678888842 222222 222222 22222111
Q ss_pred HHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhh
Q 001197 636 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 715 (1125)
Q Consensus 636 ~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~ 715 (1125)
.++. -+.-+..++..|...-.-. ..
T Consensus 232 ~d~~-L~GikQyv~~~~s~nnsve------------------------------------------------------em 256 (980)
T KOG4284|consen 232 DDVQ-LFGIKQYVVAKCSPNNSVE------------------------------------------------------EM 256 (980)
T ss_pred CCce-eechhheeeeccCCcchHH------------------------------------------------------HH
Confidence 1111 0111222222222110000 00
Q ss_pred cchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccc
Q 001197 716 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 795 (1125)
Q Consensus 716 S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrA 795 (1125)
--|++.|-+++..+. -...||||....-++-+..+|...|+.+..+.|.|++.+|..+++.+..-. ++ +|+||+-
T Consensus 257 rlklq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~--~r-ILVsTDL 331 (980)
T KOG4284|consen 257 RLKLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFR--VR-ILVSTDL 331 (980)
T ss_pred HHHHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhce--EE-EEEecch
Confidence 114455555554442 235799999999999999999999999999999999999999999998733 44 5999999
Q ss_pred cccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEe
Q 001197 796 GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVS 843 (1125)
Q Consensus 796 GG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt 843 (1125)
.+.||+-..++.||.+|+|-+-..|.+|||||+|.|..- ..|..++.
T Consensus 332 taRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G-~aVT~~~~ 378 (980)
T KOG4284|consen 332 TARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG-AAVTLLED 378 (980)
T ss_pred hhccCCccccceEEecCCCcchHHHHHHhhhcccccccc-eeEEEecc
Confidence 999999999999999999999999999999999999653 44444443
No 96
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.59 E-value=3.6e-14 Score=178.62 Aligned_cols=312 Identities=17% Similarity=0.193 Sum_probs=224.0
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCCce
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 484 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~~~ 484 (1125)
...||-|.++|.-.+. +...++-..+|.||++.- -+...-..|-+|||.|+ ||+......+... ++.
T Consensus 263 ~~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSLCY------QlPA~l~~gitvVISPL~SLm~DQv~~L~~~--~I~ 330 (941)
T KOG0351|consen 263 KGFRPNQLEAINATLS----GKDCFVLMPTGGGKSLCY------QLPALLLGGVTVVISPLISLMQDQVTHLSKK--GIP 330 (941)
T ss_pred ccCChhHHHHHHHHHc----CCceEEEeecCCceeeEe------eccccccCCceEEeccHHHHHHHHHHhhhhc--Ccc
Confidence 4789999999985554 778888899999999654 12222234578999999 8887777777443 344
Q ss_pred EEEEcCC--hhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhh---hc-cC---eeEEEEcCCcccCChh-------hH
Q 001197 485 AVVYDGR--PDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL---KK-VQ---WIYMIVDEGHRLKNHE-------CA 548 (1125)
Q Consensus 485 vivy~G~--~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L---~k-i~---w~~VIIDEAHriKN~~-------Sk 548 (1125)
....++. ..++..+.+.+.......+++..|+|.+......+ .. .. ..++||||||...... .+
T Consensus 331 a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~ 410 (941)
T KOG0351|consen 331 ACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKR 410 (941)
T ss_pred eeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHH
Confidence 4444443 33455555556554447899999999997653222 11 12 6799999999985522 23
Q ss_pred HHHHHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhh
Q 001197 549 LAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 628 (1125)
Q Consensus 549 lskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~p 628 (1125)
+.....++.....++||||-...--.|+...|+.-.|.+|.+. |+.
T Consensus 411 l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s------fnR---------------------------- 456 (941)
T KOG0351|consen 411 LGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS------FNR---------------------------- 456 (941)
T ss_pred HHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc------CCC----------------------------
Confidence 4444466777789999999887778888888887777654432 221
Q ss_pred hhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhh
Q 001197 629 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 708 (1125)
Q Consensus 629 flLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~ 708 (1125)
+...+-|....+ ...+..+...
T Consensus 457 ---------------~NL~yeV~~k~~------------------------~~~~~~~~~~------------------- 478 (941)
T KOG0351|consen 457 ---------------PNLKYEVSPKTD------------------------KDALLDILEE------------------- 478 (941)
T ss_pred ---------------CCceEEEEeccC------------------------ccchHHHHHH-------------------
Confidence 111111111110 0001111111
Q ss_pred HHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceE
Q 001197 709 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 788 (1125)
Q Consensus 709 ~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~V 788 (1125)
.+....+...||||....+.+.+...|...|+....+|.+++..+|..+-..|..+...
T Consensus 479 ------------------~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~--- 537 (941)
T KOG0351|consen 479 ------------------SKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIR--- 537 (941)
T ss_pred ------------------hhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCe---
Confidence 11123466789999999999999999999999999999999999999999999987744
Q ss_pred EEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEE
Q 001197 789 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLV 842 (1125)
Q Consensus 789 fLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLI 842 (1125)
+++.|-|.|.|||-.+...||+|..|-+-.-|.|..|||+|-|+...+..|+=.
T Consensus 538 VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~ 591 (941)
T KOG0351|consen 538 VIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGY 591 (941)
T ss_pred EEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecch
Confidence 689999999999999999999999999999999999999999999987766533
No 97
>COG4889 Predicted helicase [General function prediction only]
Probab=99.58 E-value=4.6e-14 Score=168.25 Aligned_cols=158 Identities=21% Similarity=0.281 Sum_probs=105.2
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhC--CC
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA--PS 482 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~--p~ 482 (1125)
.+|||||..++.-.++.+..+-.|=|-..+|+|||.+++-+...+-. ..+|++||. +||.|--+|...-. +-
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l~~ 234 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKELDF 234 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCccc
Confidence 58999999999999999888888888888999999999988776654 468999998 88888544443221 11
Q ss_pred ceEEEEcCChhHH------------------HHHHHHHH--hhcCCccEEEecHHHHHHh--HHhhhccCeeEEEEcCCc
Q 001197 483 IAAVVYDGRPDER------------------KAMREEFF--SERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDEGH 540 (1125)
Q Consensus 483 ~~vivy~G~~~~R------------------~~l~~~~~--~~~~~fdVvITTYe~l~kd--~~~L~ki~w~~VIIDEAH 540 (1125)
....|+...+..| ..+...+. ......-||.+||..+-.- .....--.|++||+||||
T Consensus 235 ~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAH 314 (1518)
T COG4889 235 RASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAH 314 (1518)
T ss_pred eeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchh
Confidence 1222222221111 11111111 1113456999999988653 334455689999999999
Q ss_pred ccCCh------hhHHHHHH--HccccceEEEeecCC
Q 001197 541 RLKNH------ECALAKTI--SGYQIQRRLLLTGTP 568 (1125)
Q Consensus 541 riKN~------~SklskaL--~~l~s~~RLlLTGTP 568 (1125)
|-.+. .|..++.- ..+++..||.+||||
T Consensus 315 RTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 315 RTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred ccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 97442 22233222 344677899999999
No 98
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=3.6e-14 Score=157.59 Aligned_cols=304 Identities=17% Similarity=0.223 Sum_probs=188.2
Q ss_pred ccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHH---hhCCCc
Q 001197 408 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFS---TWAPSI 483 (1125)
Q Consensus 408 LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~---k~~p~~ 483 (1125)
+-..|..++-.|+. +...|-|--...|+|||-.....+..-........-.+.++|. -+..|--.-+. +|. .+
T Consensus 113 PskIQe~aLPlll~--~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~i 189 (477)
T KOG0332|consen 113 PSKIQETALPLLLA--EPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFT-EL 189 (477)
T ss_pred cchHHHhhcchhhc--CCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCce-ee
Confidence 33345555544443 3334446667899999965433332222221122234666998 55555444444 444 32
Q ss_pred e-EEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhcc---CeeEEEEcCCcccCChhh---HHHHHHHcc
Q 001197 484 A-AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKV---QWIYMIVDEGHRLKNHEC---ALAKTISGY 556 (1125)
Q Consensus 484 ~-vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki---~w~~VIIDEAHriKN~~S---klskaL~~l 556 (1125)
. .+++.|++..|... -.-+|+|-|..++......|+-+ +..+.|+|||..+-+... ........+
T Consensus 190 ta~yair~sk~~rG~~--------i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~l 261 (477)
T KOG0332|consen 190 TASYAIRGSKAKRGNK--------LTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSL 261 (477)
T ss_pred eEEEEecCcccccCCc--------chhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhc
Confidence 2 33455653333221 23469999999998776554433 567899999999977541 222222344
Q ss_pred c-cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhH
Q 001197 557 Q-IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 635 (1125)
Q Consensus 557 ~-s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K 635 (1125)
+ ....++.|+|-. .....|...+... -.+.+|||-
T Consensus 262 P~~~QllLFSATf~-------------------e~V~~Fa~kivpn------------------------~n~i~Lk~e- 297 (477)
T KOG0332|consen 262 PRNQQLLLFSATFV-------------------EKVAAFALKIVPN------------------------ANVIILKRE- 297 (477)
T ss_pred CCcceEEeeechhH-------------------HHHHHHHHHhcCC------------------------Cceeeeehh-
Confidence 3 556677777720 0111222111100 001111110
Q ss_pred HHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhh
Q 001197 636 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 715 (1125)
Q Consensus 636 ~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~ 715 (1125)
+ -.|++..+..+.|. + .
T Consensus 298 -e--l~L~~IkQlyv~C~------------------------------------------~------------------~ 314 (477)
T KOG0332|consen 298 -E--LALDNIKQLYVLCA------------------------------------------C------------------R 314 (477)
T ss_pred -h--ccccchhhheeecc------------------------------------------c------------------h
Confidence 0 01222222222222 1 1
Q ss_pred cchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccc
Q 001197 716 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 795 (1125)
Q Consensus 716 S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrA 795 (1125)
..|+++|..+..-+ . =...||||+...+...|...|...|+.+..++|.+...+|..++++|+.+... +|++|.+
T Consensus 315 ~~K~~~l~~lyg~~-t-igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k---VLitTnV 389 (477)
T KOG0332|consen 315 DDKYQALVNLYGLL-T-IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK---VLITTNV 389 (477)
T ss_pred hhHHHHHHHHHhhh-h-hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce---EEEEech
Confidence 23555665533222 1 12579999999999999999999999999999999999999999999998887 7999999
Q ss_pred cccccCCCCCCEEEEeCCCC------ChhhHHHHHhhhcccCCCC
Q 001197 796 GGLGLNLQTADTVIIFDSDW------NPQMDQQAEDRAHRIGQKK 834 (1125)
Q Consensus 796 GG~GLNLq~Ad~VIi~D~~W------NP~~d~QAigRahRIGQkk 834 (1125)
.++||+.+..+.||+||.|- .|..|++|+||++|.|-+-
T Consensus 390 ~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG 434 (477)
T KOG0332|consen 390 CARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG 434 (477)
T ss_pred hhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc
Confidence 99999999999999999985 5789999999999999553
No 99
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.58 E-value=8.4e-14 Score=161.11 Aligned_cols=316 Identities=19% Similarity=0.206 Sum_probs=207.6
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHH-HHHHHHHHHccCCCCCEEEEcCcccH-HHHHHHHHhhCC--
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQT-IALIAYLLENKGVTGPHVIVAPKAVL-PNWINEFSTWAP-- 481 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqa-Iali~~L~e~~~~~gp~LIVvP~sll-~qW~~Ef~k~~p-- 481 (1125)
.+|.|.|.-+|. .-.-.+.|-++...+++|||+++ +|-|..++.. .+.+|.+||+..+ .|=..+|..-+.
T Consensus 215 ~eLlPVQ~laVe---~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~---g~KmlfLvPLVALANQKy~dF~~rYs~L 288 (830)
T COG1202 215 EELLPVQVLAVE---AGLLEGENLLVVSATASGKTLIGELAGIPRLLSG---GKKMLFLVPLVALANQKYEDFKERYSKL 288 (830)
T ss_pred ceecchhhhhhh---hccccCCceEEEeccCCCcchHHHhhCcHHHHhC---CCeEEEEehhHHhhcchHHHHHHHhhcc
Confidence 379999999886 33335677788999999999887 5666666553 4689999999554 555567776553
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHh-hhccCeeEEEEcCCcccCChh--h---HHHHHHHc
Q 001197 482 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY-LKKVQWIYMIVDEGHRLKNHE--C---ALAKTISG 555 (1125)
Q Consensus 482 ~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~-L~ki~w~~VIIDEAHriKN~~--S---klskaL~~ 555 (1125)
.+++.+-.|...-+..-.........+.||||-||+-+---... -.--+...|||||.|.+.... . .+..-|+.
T Consensus 289 glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~ 368 (830)
T COG1202 289 GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRY 368 (830)
T ss_pred cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHHHH
Confidence 24554555644322221111112235789999999876321111 111256799999999997622 2 24444444
Q ss_pred c-ccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhh
Q 001197 556 Y-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 634 (1125)
Q Consensus 556 l-~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~ 634 (1125)
+ +....+.||||- .|+.||..-|+.-..
T Consensus 369 l~~~AQ~i~LSATV--gNp~elA~~l~a~lV------------------------------------------------- 397 (830)
T COG1202 369 LFPGAQFIYLSATV--GNPEELAKKLGAKLV------------------------------------------------- 397 (830)
T ss_pred hCCCCeEEEEEeec--CChHHHHHHhCCeeE-------------------------------------------------
Confidence 4 557789999994 566666554321000
Q ss_pred HHHHhhhCC-CCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHH
Q 001197 635 KDEVEKYLP-GKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 713 (1125)
Q Consensus 635 K~dV~~~LP-~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li 713 (1125)
+.+.-| |...+.+.|.=.
T Consensus 398 ---~y~~RPVplErHlvf~~~e---------------------------------------------------------- 416 (830)
T COG1202 398 ---LYDERPVPLERHLVFARNE---------------------------------------------------------- 416 (830)
T ss_pred ---eecCCCCChhHeeeeecCc----------------------------------------------------------
Confidence 000011 112233333211
Q ss_pred hhcchHHHHHHHhHHhh----hCC--CEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCce
Q 001197 714 RASGKFELLDRLLPKLR----KSG--HRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 787 (1125)
Q Consensus 714 ~~S~Kle~L~~lL~kl~----~~g--~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~ 787 (1125)
+.|...+.++++.-. ..| ...|||+.+..-...|+++|..+|++...+|++++..+|..+-..|.+....
T Consensus 417 --~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~-- 492 (830)
T COG1202 417 --SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELA-- 492 (830)
T ss_pred --hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcc--
Confidence 112222222221110 112 3689999999999999999999999999999999999999999999998876
Q ss_pred EEEeeccccccccCCCCCCEEEE----eCCCC-ChhhHHHHHhhhcccCCCCcEEEEEEEeCC
Q 001197 788 MFLLSTRAGGLGLNLQTADTVII----FDSDW-NPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 845 (1125)
Q Consensus 788 VfLLSTrAGG~GLNLq~Ad~VIi----~D~~W-NP~~d~QAigRahRIGQkk~V~VyrLIt~~ 845 (1125)
.+++|.|.|-|++.+ |+.||+ +.-.| +|..+.|-.|||+|.|=.-.-.||-++-.|
T Consensus 493 -~VVTTAAL~AGVDFP-ASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 493 -AVVTTAALAAGVDFP-ASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred -eEeehhhhhcCCCCc-hHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 689999999999988 455554 44445 999999999999999977667788777654
No 100
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=3.4e-13 Score=167.40 Aligned_cols=395 Identities=17% Similarity=0.199 Sum_probs=226.8
Q ss_pred CCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccH-HH---HHHHHHhh
Q 001197 404 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL-PN---WINEFSTW 479 (1125)
Q Consensus 404 ~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll-~q---W~~Ef~k~ 479 (1125)
.|-..++-|+-|---| +.|-|.-..+|.|||+++...+...... ...++||+|+.-| .+ |...|.++
T Consensus 79 lg~~~ydvQliGg~~L------h~G~Iaem~TGeGKTL~a~Lpa~~~al~---G~~V~VvTpn~yLA~qd~e~m~~l~~~ 149 (896)
T PRK13104 79 LGLRHFDVQLIGGMVL------HEGNIAEMRTGEGKTLVATLPAYLNAIS---GRGVHIVTVNDYLAKRDSQWMKPIYEF 149 (896)
T ss_pred cCCCcchHHHhhhhhh------ccCccccccCCCCchHHHHHHHHHHHhc---CCCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 3557777888876433 3455888999999999876544422222 1358999999443 33 66666666
Q ss_pred CCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHH----HHhHHhhh-----ccCeeEEEEcCCcccCChhhHHH
Q 001197 480 APSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLI----MRDRQYLK-----KVQWIYMIVDEGHRLKNHECALA 550 (1125)
Q Consensus 480 ~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l----~kd~~~L~-----ki~w~~VIIDEAHriKN~~Skls 550 (1125)
+ ++.+.+..|........ .. -..+|++.|...+ .++.-.+. .-.+.++|||||++|--.
T Consensus 150 l-GLtv~~i~gg~~~~~r~-~~-----y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLID----- 217 (896)
T PRK13104 150 L-GLTVGVIYPDMSHKEKQ-EA-----YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILID----- 217 (896)
T ss_pred c-CceEEEEeCCCCHHHHH-HH-----hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhh-----
Confidence 6 45655555443221111 11 2578999998876 33321111 137889999999987432
Q ss_pred HHHHccccceEEEeecCCCCCChHHHHHHhhc----cCCCCCCChHHHHHHhcccccccCcccCChHHHHHH--------
Q 001197 551 KTISGYQIQRRLLLTGTPIQNSLQELWSLLNF----LLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLI-------- 618 (1125)
Q Consensus 551 kaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~f----L~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~-------- 618 (1125)
.++--|++||.+- ...++|..++- |.++.-... ...|.. ......+.+++.....+
T Consensus 218 ------eArtPLIISg~~~--~~~~~y~~~~~~v~~l~~~~~~~~---~~dy~i-dek~~~v~Lte~G~~~~e~~~~~~~ 285 (896)
T PRK13104 218 ------EARTPLIISGAAE--DSSELYIKINSLIPQLKKQEEEGD---EGDYTI-DEKQKQAHLTDAGHLHIEELLTKAK 285 (896)
T ss_pred ------ccCCceeeeCCCc--cchHHHHHHHHHHHHHHhccccCC---CCCEEE-EcCCCceEEchHHHHHHHHHHHhCC
Confidence 2345578888653 22445544432 222200000 000000 01112233333321111
Q ss_pred ----------------HHHHHhhhhhh-hhhhhHHHHhhhCCCCeEEEEEecCCH-------HHHHHHHHHHhhcccccc
Q 001197 619 ----------------IRRLHHVIRPF-ILRRKKDEVEKYLPGKSQVILKCDMSA-------WQKVYYQQVTDVGRVGLD 674 (1125)
Q Consensus 619 ----------------i~rL~~vL~pf-lLRR~K~dV~~~LP~k~e~vi~~~ms~-------~Q~~lY~~i~~~~~~~l~ 674 (1125)
...+...|+-. ++.|-+. ++-...+.++--++|. ++.-+-+.+..+....+.
T Consensus 286 il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~d----YiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~ 361 (896)
T PRK13104 286 LLDPGESLYHASNIMLMHHVNAALKAHAMFHRDID----YIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQ 361 (896)
T ss_pred ccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCc----eEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCC
Confidence 11111111111 1111110 0100111111112221 223333333332222221
Q ss_pred cCC--CccchHHHHH-----------------HHHHHhhCCCcccccccchhhHH-----HHHhhcchHHHHHHHhHHhh
Q 001197 675 TGT--GKSKSLQNLS-----------------MQLRKCCNHPYLFVGEYNMWRKE-----EIIRASGKFELLDRLLPKLR 730 (1125)
Q Consensus 675 ~~~--~k~~~l~n~~-----------------~qLRkicnhP~L~~~~~~~~~~~-----~li~~S~Kle~L~~lL~kl~ 730 (1125)
... ..+-.++|+. ..+.++.+-+.+..+...+.... -......|+.++.+.+..+.
T Consensus 362 ~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~ 441 (896)
T PRK13104 362 NENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECG 441 (896)
T ss_pred CCceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHH
Confidence 111 1112233332 23455555554444332221100 01234568999999999999
Q ss_pred hCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCC------
Q 001197 731 KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT------ 804 (1125)
Q Consensus 731 ~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~------ 804 (1125)
+.|..|||||.+....+.+..+|...|+++..|+|.....+|..+.+.|+.+. ++|+|..+|+|+++.=
T Consensus 442 ~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~-----VtIATNmAGRGtDI~Lggn~~~ 516 (896)
T PRK13104 442 VRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA-----VTIATNMAGRGTDIVLGGSLAA 516 (896)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc-----EEEeccCccCCcceecCCchhh
Confidence 99999999999999999999999999999999999999999999999999863 7999999999999652
Q ss_pred --------------------------------CCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEE
Q 001197 805 --------------------------------ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFV 840 (1125)
Q Consensus 805 --------------------------------Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~Vyr 840 (1125)
-=+||.-..+-|-..+.|..||++|.|..-....|-
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~l 584 (896)
T PRK13104 517 DLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYL 584 (896)
T ss_pred hhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEE
Confidence 237888899999999999999999999887655543
No 101
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.56 E-value=7.5e-14 Score=144.47 Aligned_cols=166 Identities=25% Similarity=0.316 Sum_probs=118.4
Q ss_pred CCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCC-
Q 001197 405 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS- 482 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~- 482 (1125)
..+++|||.+++..++... .++++..++|+|||..++.++........ .+++||++|. .+..+|..++..+++.
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4689999999998877511 78899999999999988777776655432 4589999995 7889999999998865
Q ss_pred --ceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHh--hhccCeeEEEEcCCcccCC--hhhHHHHHHHcc
Q 001197 483 --IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKN--HECALAKTISGY 556 (1125)
Q Consensus 483 --~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~--L~ki~w~~VIIDEAHriKN--~~SklskaL~~l 556 (1125)
.....+.+..... .. ..+.. ..++|+++||+.+...... +....|+++||||+|.+.+ ....+...+..+
T Consensus 82 ~~~~~~~~~~~~~~~-~~-~~~~~--~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 82 GLKVVGLYGGDSKRE-QL-RKLES--GKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred CeEEEEEeCCcchHH-HH-HHHhc--CCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 3455555543221 11 11211 3459999999999887655 4455788999999999985 333444444544
Q ss_pred -ccceEEEeecCCCCCChHHHHH
Q 001197 557 -QIQRRLLLTGTPIQNSLQELWS 578 (1125)
Q Consensus 557 -~s~~RLlLTGTPlqN~l~EL~s 578 (1125)
...+++++||||..+.-...+.
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~ 180 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLEL 180 (201)
T ss_pred CccceEEEEecCCchhHHHHHHH
Confidence 5789999999997443333333
No 102
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.56 E-value=1.9e-13 Score=172.48 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=92.0
Q ss_pred CCCEEEEEeccchHHHHHHHHHHh---CCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEE
Q 001197 732 SGHRVLLFSQMTRLMDILEIYLKL---NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 808 (1125)
Q Consensus 732 ~g~KVLIFsq~t~~ldiLe~~L~~---~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~V 808 (1125)
.+..+|||++....++.+...|.. .++.++.++|+++.++|..++..|..+... +|+||..+..||++.++++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rk---VlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRK---VVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeE---EEEecchHHhcccccCceEE
Confidence 357899999999999999999986 588999999999999999999999775443 79999999999999999999
Q ss_pred EEeCCC----CCh--------------hhHHHHHhhhcccCCCCcEEEEEEEeCC
Q 001197 809 IIFDSD----WNP--------------QMDQQAEDRAHRIGQKKEVRVFVLVSVG 845 (1125)
Q Consensus 809 Ii~D~~----WNP--------------~~d~QAigRahRIGQkk~V~VyrLIt~~ 845 (1125)
|.++.+ |+| ..+.||.||++|. .+-.+|+|+++.
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~ 339 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKE 339 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHH
Confidence 997654 332 3588999999887 478899999864
No 103
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.55 E-value=7.6e-14 Score=155.88 Aligned_cols=309 Identities=20% Similarity=0.267 Sum_probs=200.3
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHH--HH---HHHHccCCCC-CEEEEcCc-ccHHHHHHHHHhh
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL--IA---YLLENKGVTG-PHVIVAPK-AVLPNWINEFSTW 479 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIal--i~---~L~e~~~~~g-p~LIVvP~-sll~qW~~Ef~k~ 479 (1125)
++-|-|-++ |-+- -++...|-...+|+|||+.-+.- +. .........+ .+||+.|. -|..|-.-|..++
T Consensus 242 KPtPIqSQa--WPI~--LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQA--WPIL--LQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcc--ccee--ecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 344555443 3332 23666787889999999876532 11 1111111223 36888898 5566677777776
Q ss_pred C-CC-ceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH--HhhhccCeeEEEEcCCcccCCh--hhHHHHHH
Q 001197 480 A-PS-IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKNH--ECALAKTI 553 (1125)
Q Consensus 480 ~-p~-~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~--~~L~ki~w~~VIIDEAHriKN~--~SklskaL 553 (1125)
. .. ..+.+|.|.. |....+.+. ...+++|.|+..+.+.. ..+.-....|+|+|||.+|... .-+..+.|
T Consensus 318 syng~ksvc~ygggn--R~eqie~lk---rgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkil 392 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGN--RNEQIEDLK---RGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKIL 392 (629)
T ss_pred hhcCcceEEEecCCC--chhHHHHHh---cCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHh
Confidence 4 23 4555666643 222222222 67899999999886532 2233346779999999999764 45677777
Q ss_pred HccccceEEEee-cCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhh
Q 001197 554 SGYQIQRRLLLT-GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 632 (1125)
Q Consensus 554 ~~l~s~~RLlLT-GTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLR 632 (1125)
..+...+..+|| || -. --+|
T Consensus 393 ldiRPDRqtvmTSAT-WP----------------------------------------------------------~~Vr 413 (629)
T KOG0336|consen 393 LDIRPDRQTVMTSAT-WP----------------------------------------------------------EGVR 413 (629)
T ss_pred hhcCCcceeeeeccc-Cc----------------------------------------------------------hHHH
Confidence 777776666555 44 00 0112
Q ss_pred hhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHH
Q 001197 633 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEI 712 (1125)
Q Consensus 633 R~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~l 712 (1125)
|+.....+ ...++++.- ++-...++ .-++ ++..
T Consensus 414 rLa~sY~K-----ep~~v~vGs------------------LdL~a~~s-VkQ~-------------i~v~---------- 446 (629)
T KOG0336|consen 414 RLAQSYLK-----EPMIVYVGS------------------LDLVAVKS-VKQN-------------IIVT---------- 446 (629)
T ss_pred HHHHHhhh-----CceEEEecc------------------cceeeeee-eeee-------------EEec----------
Confidence 22221111 111111110 00000000 0000 0000
Q ss_pred HhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEee
Q 001197 713 IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 792 (1125)
Q Consensus 713 i~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLS 792 (1125)
..+.|++.+..++.. +.+..|||||+....+.|.|..-|...|+...-|||+-.+.+|+.+++.|+.+.-. +|++
T Consensus 447 -~d~~k~~~~~~f~~~-ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vr---ILva 521 (629)
T KOG0336|consen 447 -TDSEKLEIVQFFVAN-MSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVR---ILVA 521 (629)
T ss_pred -ccHHHHHHHHHHHHh-cCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceE---EEEE
Confidence 124456555555544 46788999999999999999999999999999999999999999999999997754 6999
Q ss_pred ccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCc
Q 001197 793 TRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 835 (1125)
Q Consensus 793 TrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~ 835 (1125)
|+.++.||++....+|+.||.|-|-..|.+++||.+|-|.+-.
T Consensus 522 TDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 522 TDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred echhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 9999999999999999999999999999999999999996643
No 104
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.54 E-value=1e-14 Score=158.82 Aligned_cols=310 Identities=19% Similarity=0.244 Sum_probs=206.4
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEE-cCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCccc----HHHHHHHHHhhCC
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILA-DEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV----LPNWINEFSTWAP 481 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILA-DEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sl----l~qW~~Ef~k~~p 481 (1125)
.+.|.|.+++--.+. +. -||| .--|+|||-..+--+...+..+...--.+|+||..- .+|-..++.++.
T Consensus 107 kPSPiQeesIPiaLt----Gr-diLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~- 180 (459)
T KOG0326|consen 107 KPSPIQEESIPIALT----GR-DILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL- 180 (459)
T ss_pred CCCCccccccceeec----ch-hhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-
Confidence 566777777754443 22 2554 668999996654444333333333335689999732 466778888887
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHh--hhccCeeEEEEcCCcccCChh--hHHHHHHHccc
Q 001197 482 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGYQ 557 (1125)
Q Consensus 482 ~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~--L~ki~w~~VIIDEAHriKN~~--SklskaL~~l~ 557 (1125)
++.+.+..|....|..+. .-....+++|.|+..+..-... -.-.+-..+|+|||..+.... ..+.+.+..++
T Consensus 181 ~i~vmvttGGT~lrDDI~----Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP 256 (459)
T KOG0326|consen 181 GIKVMVTTGGTSLRDDIM----RLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLP 256 (459)
T ss_pred CeEEEEecCCccccccee----eecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCC
Confidence 488888888776655432 2226788999999988664321 111245689999999987643 23444555553
Q ss_pred -cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHh-cccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhH
Q 001197 558 -IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWF-NAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 635 (1125)
Q Consensus 558 -s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f-~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K 635 (1125)
.+..++.|||- . -....|...+ .+|+.-.
T Consensus 257 ~~rQillySATF-P------------------~tVk~Fm~~~l~kPy~IN------------------------------ 287 (459)
T KOG0326|consen 257 KERQILLYSATF-P------------------LTVKGFMDRHLKKPYEIN------------------------------ 287 (459)
T ss_pred ccceeeEEeccc-c------------------hhHHHHHHHhccCcceee------------------------------
Confidence 45556677772 0 0223333222 1111100
Q ss_pred HHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhh
Q 001197 636 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 715 (1125)
Q Consensus 636 ~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~ 715 (1125)
+.++|..+-. ..+| ..+..
T Consensus 288 --LM~eLtl~Gv-----------tQyY------------------------------------------------afV~e 306 (459)
T KOG0326|consen 288 --LMEELTLKGV-----------TQYY------------------------------------------------AFVEE 306 (459)
T ss_pred --hhhhhhhcch-----------hhhe------------------------------------------------eeech
Confidence 0000000000 0011 11234
Q ss_pred cchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccc
Q 001197 716 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 795 (1125)
Q Consensus 716 S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrA 795 (1125)
+.|+..|.-++.+|.- ...||||+++...++++......|+....+|..|.++.|..+..+|.++... .|++|+-
T Consensus 307 ~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~cr---nLVctDL 381 (459)
T KOG0326|consen 307 RQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCR---NLVCTDL 381 (459)
T ss_pred hhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccc---eeeehhh
Confidence 5566667777766642 3689999999999999999999999999999999999999999999997754 5899999
Q ss_pred cccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEe
Q 001197 796 GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVS 843 (1125)
Q Consensus 796 GG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt 843 (1125)
.-.||++|+.+.||.||-|-|+..|++++||.+|.|-- -....|||
T Consensus 382 ~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhl--GlAInLit 427 (459)
T KOG0326|consen 382 FTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL--GLAINLIT 427 (459)
T ss_pred hhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCc--ceEEEEEe
Confidence 99999999999999999999999999999999999943 33445554
No 105
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.53 E-value=9.9e-14 Score=162.27 Aligned_cols=314 Identities=19% Similarity=0.244 Sum_probs=199.7
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHH-HHHHcc----CCCCCEEEEcCc-ccHHHHHHHHHhhC
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA-YLLENK----GVTGPHVIVAPK-AVLPNWINEFSTWA 480 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~-~L~e~~----~~~gp~LIVvP~-sll~qW~~Ef~k~~ 480 (1125)
.+.|-|..++-.++. +.+++-+.++|.|||+.-+.-+. .|.... ...-..+|+.|. .+..|-..|+.++.
T Consensus 158 ~Pt~iq~~aipvfl~----~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLE----KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred CCCcccchhhhhhhc----ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcC
Confidence 567788888877776 77888899999999987655443 333332 222256899998 78889999999987
Q ss_pred --CC--ceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHh----hhccCeeEEEEcCCcccCChhh---HH
Q 001197 481 --PS--IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY----LKKVQWIYMIVDEGHRLKNHEC---AL 549 (1125)
Q Consensus 481 --p~--~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~----L~ki~w~~VIIDEAHriKN~~S---kl 549 (1125)
+. ..+..+..+....... .... ...++++|.|+..+...... +.-....++|+|||.++.++.+ ++
T Consensus 234 ~~~~t~~~a~~~~~~~~~~qk~--a~~~-~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Ql 310 (593)
T KOG0344|consen 234 IDEGTSLRAAQFSKPAYPSQKP--AFLS-DEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQL 310 (593)
T ss_pred CCCCCchhhhhcccccchhhcc--chhH-HHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHH
Confidence 43 2333333321111110 1111 15688999999987766533 2233455699999999987621 11
Q ss_pred HHHHHcccc--ceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhh
Q 001197 550 AKTISGYQI--QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIR 627 (1125)
Q Consensus 550 skaL~~l~s--~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~ 627 (1125)
...+....+ -++=++|+| .+ ....+| .+++.
T Consensus 311 a~I~sac~s~~i~~a~FSat----------------~~------~~VEE~-------------------------~~~i~ 343 (593)
T KOG0344|consen 311 ADIYSACQSPDIRVALFSAT----------------IS------VYVEEW-------------------------AELIK 343 (593)
T ss_pred HHHHHHhcCcchhhhhhhcc----------------cc------HHHHHH-------------------------HHHhh
Confidence 111111111 111111221 00 001111 11111
Q ss_pred hhhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchh
Q 001197 628 PFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMW 707 (1125)
Q Consensus 628 pflLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~ 707 (1125)
.+.+ .+.+...+.+ .+.+.| -.+|.+
T Consensus 344 ~~~~-----------------~vivg~~~sa-------------------------~~~V~Q-------elvF~g----- 369 (593)
T KOG0344|consen 344 SDLK-----------------RVIVGLRNSA-------------------------NETVDQ-------ELVFCG----- 369 (593)
T ss_pred ccce-----------------eEEEecchhH-------------------------hhhhhh-------hheeee-----
Confidence 1110 1111111111 111110 111111
Q ss_pred hHHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHH-HhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCc
Q 001197 708 RKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL-KLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPY 786 (1125)
Q Consensus 708 ~~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L-~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~ 786 (1125)
..-+|+-.+..++.... .-.+|||.|...-...|-..| .+.++.+..++|.-+..+|.+.+++|..+..
T Consensus 370 ------se~~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~I-- 439 (593)
T KOG0344|consen 370 ------SEKGKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKI-- 439 (593)
T ss_pred ------cchhHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCe--
Confidence 13457777777776653 457999999999998898889 7889999999999999999999999999764
Q ss_pred eEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCc-EEEE
Q 001197 787 FMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE-VRVF 839 (1125)
Q Consensus 787 ~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~-V~Vy 839 (1125)
+ +|++|...+.||++.+++.||+||.|-+-..|++++||.+|-|+.-. +..|
T Consensus 440 w-vLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 440 W-VLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred e-EEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 4 59999999999999999999999999999999999999999998743 4444
No 106
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.53 E-value=2e-14 Score=129.79 Aligned_cols=78 Identities=33% Similarity=0.559 Sum_probs=74.3
Q ss_pred HHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhccc
Q 001197 751 IYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRI 830 (1125)
Q Consensus 751 ~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRI 830 (1125)
.+|...|+.+..++|.++..+|..+++.|+.+... +|++|.++++|||++.+++||+++++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR---VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS---EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce---EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 36889999999999999999999999999998774 799999999999999999999999999999999999999999
Q ss_pred C
Q 001197 831 G 831 (1125)
Q Consensus 831 G 831 (1125)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 8
No 107
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.52 E-value=2.1e-12 Score=159.79 Aligned_cols=125 Identities=21% Similarity=0.176 Sum_probs=108.9
Q ss_pred cchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccc
Q 001197 716 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 795 (1125)
Q Consensus 716 S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrA 795 (1125)
.+++..|...+......|.++||||.....++.|..+|...|+++..+||.++..+|.+++..|..+... +|++|..
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~---VLV~t~~ 501 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFD---VLVGINL 501 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCce---EEEEcCh
Confidence 4577788888888888999999999999999999999999999999999999999999999999887644 6889999
Q ss_pred cccccCCCCCCEEEEeC-----CCCChhhHHHHHhhhcccCCCCcEEEEEEEeCCC
Q 001197 796 GGLGLNLQTADTVIIFD-----SDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 846 (1125)
Q Consensus 796 GG~GLNLq~Ad~VIi~D-----~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~T 846 (1125)
.+.|++++.++.||++| .+-+...++|++||++|.. .-.|+.|+...|
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~---~G~vi~~~~~~~ 554 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV---NGKVIMYADKIT 554 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC---CCEEEEEEcCCC
Confidence 99999999999999999 4668899999999999974 234556665544
No 108
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.52 E-value=1.3e-13 Score=134.26 Aligned_cols=136 Identities=21% Similarity=0.265 Sum_probs=100.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCccc-HHHHHHHHHhhCC-CceEEEEcCChhHHHHHHHHHHhh
Q 001197 428 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV-LPNWINEFSTWAP-SIAAVVYDGRPDERKAMREEFFSE 505 (1125)
Q Consensus 428 ~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sl-l~qW~~Ef~k~~p-~~~vivy~G~~~~R~~l~~~~~~~ 505 (1125)
++++.+++|+|||.+++.++..+... ...+++||+||... ..+|...+..+.. ...+.++.+......... ..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 76 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEK----LL 76 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHH----Hh
Confidence 57899999999999999999888765 34568999999955 5556677777775 466666666544333221 11
Q ss_pred cCCccEEEecHHHHHHhHHhh--hccCeeEEEEcCCcccCChhhHHH---HHHHccccceEEEeecCC
Q 001197 506 RGRFNVLITHYDLIMRDRQYL--KKVQWIYMIVDEGHRLKNHECALA---KTISGYQIQRRLLLTGTP 568 (1125)
Q Consensus 506 ~~~fdVvITTYe~l~kd~~~L--~ki~w~~VIIDEAHriKN~~Skls---kaL~~l~s~~RLlLTGTP 568 (1125)
....+|+++||+.+....... ....|+++||||+|.+.+...... .........+++++||||
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 267889999999887765432 344799999999999988765443 333456788999999998
No 109
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=3.6e-12 Score=157.72 Aligned_cols=393 Identities=14% Similarity=0.178 Sum_probs=218.2
Q ss_pred CCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHH----HHHHHHhh
Q 001197 404 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN----WINEFSTW 479 (1125)
Q Consensus 404 ~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~q----W~~Ef~k~ 479 (1125)
.|-.+++-|+-|.--| +.|.|.-..||.|||++|...+...... ...+-||+|+..|.. |...+-++
T Consensus 77 ~g~~~~dvQlig~l~l------~~G~iaEm~TGEGKTLvA~l~a~l~al~---G~~v~vvT~neyLA~Rd~e~~~~~~~~ 147 (796)
T PRK12906 77 LGLRPFDVQIIGGIVL------HEGNIAEMKTGEGKTLTATLPVYLNALT---GKGVHVVTVNEYLSSRDATEMGELYRW 147 (796)
T ss_pred hCCCCchhHHHHHHHH------hcCCcccccCCCCCcHHHHHHHHHHHHc---CCCeEEEeccHHHHHhhHHHHHHHHHh
Confidence 3567888899886533 2355778999999999986554433333 246788899966643 66666666
Q ss_pred CCCceEEEEcCC--hhHHHHHHHHHHhhcCCccEEEecHHH-----HHHh----HHhhhccCeeEEEEcCCcccCChhhH
Q 001197 480 APSIAAVVYDGR--PDERKAMREEFFSERGRFNVLITHYDL-----IMRD----RQYLKKVQWIYMIVDEGHRLKNHECA 548 (1125)
Q Consensus 480 ~p~~~vivy~G~--~~~R~~l~~~~~~~~~~fdVvITTYe~-----l~kd----~~~L~ki~w~~VIIDEAHriKN~~Sk 548 (1125)
+ ++.+-+..|. +..|+.. -..||+.+|-.. ++.. ...+....++++||||+..+-=.
T Consensus 148 L-Gl~vg~i~~~~~~~~r~~~--------y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiD--- 215 (796)
T PRK12906 148 L-GLTVGLNLNSMSPDEKRAA--------YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILID--- 215 (796)
T ss_pred c-CCeEEEeCCCCCHHHHHHH--------hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeec---
Confidence 6 5777666654 3333322 245777777433 3221 12223347889999999886322
Q ss_pred HHHHHHccccceEEEeecCCCCCChHHHHHHhhcc----CCCCC--CChHHHHHHhcccccccCcccCChHHHHHHH---
Q 001197 549 LAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFL----LPTIF--NSVENFEEWFNAPFKDRGQVALTDEEQLLII--- 619 (1125)
Q Consensus 549 lskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL----~P~~f--~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i--- 619 (1125)
.+..-+++||.+- ...++|..++-+ .+..- +........|.. ......+.+++.....+-
T Consensus 216 --------eartPLiisg~~~--~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~i-d~~~k~v~lte~G~~~~e~~~ 284 (796)
T PRK12906 216 --------EARTPLIISGQAE--KATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKI-DEKTKTISLTEQGIRKAEKLF 284 (796)
T ss_pred --------cCCCceecCCCCC--cchHHHHHHHHHHHHHHhhhhccccccCCCCceEE-EcccCceeecHHHHHHHHHHc
Confidence 2334567777652 233455443322 22110 000000000000 001112223332111111
Q ss_pred --------------HHHHhhhhh-hhhhhhHHHHhhhCCCCeEEEEEecCC-------HHHHHHHHHHHhhcccccccCC
Q 001197 620 --------------RRLHHVIRP-FILRRKKDEVEKYLPGKSQVILKCDMS-------AWQKVYYQQVTDVGRVGLDTGT 677 (1125)
Q Consensus 620 --------------~rL~~vL~p-flLRR~K~dV~~~LP~k~e~vi~~~ms-------~~Q~~lY~~i~~~~~~~l~~~~ 677 (1125)
..+...|+- +++.+ ++.--+.+....+|- ..| .++.-+-+.+..+....+....
T Consensus 285 ~i~~l~~~~~~~~~~~i~~Al~A~~l~~~---d~dYiV~d~~V~ivD-~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~ 360 (796)
T PRK12906 285 GLDNLYDSENTALAHHIDQALRANYIMLK---DIDYVVQDGEVLIVD-EFTGRVMEGRRYSDGLHQAIEAKEGVKIQEEN 360 (796)
T ss_pred CCccccCchhhhHHHHHHHHHHHHHHHhc---CCcEEEECCEEEEEe-CCCCCcCCCCccChHHHHHHHHhcCCCcCCCc
Confidence 111111111 11111 110001111111111 111 1222233333222211111100
Q ss_pred --CccchHHH-----------------HHHHHHHhhCCCcccccccchhhH----HHH-HhhcchHHHHHHHhHHhhhCC
Q 001197 678 --GKSKSLQN-----------------LSMQLRKCCNHPYLFVGEYNMWRK----EEI-IRASGKFELLDRLLPKLRKSG 733 (1125)
Q Consensus 678 --~k~~~l~n-----------------~~~qLRkicnhP~L~~~~~~~~~~----~~l-i~~S~Kle~L~~lL~kl~~~g 733 (1125)
...-++++ -...+.++.+-+.+..+...+... +.+ .....|+..|.+.+......|
T Consensus 361 ~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g 440 (796)
T PRK12906 361 QTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKG 440 (796)
T ss_pred eeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCC
Confidence 00111111 123456666666555443322111 001 123458889999998888899
Q ss_pred CEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCC---CCC----
Q 001197 734 HRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ---TAD---- 806 (1125)
Q Consensus 734 ~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq---~Ad---- 806 (1125)
..|||||.+....+.|...|...|+++..++|.....++.-+...|..+. ++|+|..+|+|+++. .+.
T Consensus 441 ~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~-----VtIATnmAGRGtDI~l~~~V~~~GG 515 (796)
T PRK12906 441 QPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA-----VTIATNMAGRGTDIKLGPGVKELGG 515 (796)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce-----EEEEeccccCCCCCCCCcchhhhCC
Confidence 99999999999999999999999999999999988666666666555432 799999999999995 566
Q ss_pred -EEEEeCCCCChhhHHHHHhhhcccCCCCcEE
Q 001197 807 -TVIIFDSDWNPQMDQQAEDRAHRIGQKKEVR 837 (1125)
Q Consensus 807 -~VIi~D~~WNP~~d~QAigRahRIGQkk~V~ 837 (1125)
+||.++.|-|+..+.|+.||++|.|..-...
T Consensus 516 LhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 516 LAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred cEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 9999999999999999999999999876543
No 110
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.50 E-value=1.6e-12 Score=146.10 Aligned_cols=323 Identities=16% Similarity=0.188 Sum_probs=220.4
Q ss_pred cHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCCceEEE
Q 001197 409 RAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVV 487 (1125)
Q Consensus 409 rpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~~~viv 487 (1125)
-|.|..++.-++. .+....++.++|.||++..-.- .|+. .|-++||.|+ .|+......+.+.--....+-
T Consensus 22 s~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLP--aL~~----~gITIV~SPLiALIkDQiDHL~~LKVp~~SLN 92 (641)
T KOG0352|consen 22 SRLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLP--ALVH----GGITIVISPLIALIKDQIDHLKRLKVPCESLN 92 (641)
T ss_pred ChHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhch--HHHh----CCeEEEehHHHHHHHHHHHHHHhcCCchhHhc
Confidence 4789999987775 5566789999999999754211 1222 3467999998 777777777777543333333
Q ss_pred EcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHh-----HHhhh-ccCeeEEEEcCCcccCC------hhhHHHHHH-H
Q 001197 488 YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD-----RQYLK-KVQWIYMIVDEGHRLKN------HECALAKTI-S 554 (1125)
Q Consensus 488 y~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd-----~~~L~-ki~w~~VIIDEAHriKN------~~SklskaL-~ 554 (1125)
-.-+..+|..+...+........++.+|++....+ ...|. .....|++|||||...- +..-.--+| .
T Consensus 93 SKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS 172 (641)
T KOG0352|consen 93 SKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRS 172 (641)
T ss_pred chhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHh
Confidence 34456778888777777667778999999876543 22232 33577999999998743 222233334 4
Q ss_pred ccccceEEEeecCCCCCChHHHHHHhhccCCC-CCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 001197 555 GYQIQRRLLLTGTPIQNSLQELWSLLNFLLPT-IFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 633 (1125)
Q Consensus 555 ~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~-~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR 633 (1125)
.+.....++||+|--..--+|++..|++-.|- +|.+. .|...
T Consensus 173 ~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP-~FR~N------------------------------------ 215 (641)
T KOG0352|consen 173 VCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP-TFRDN------------------------------------ 215 (641)
T ss_pred hCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc-chhhh------------------------------------
Confidence 45566778999998777778888888776653 22221 11110
Q ss_pred hHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHH
Q 001197 634 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 713 (1125)
Q Consensus 634 ~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li 713 (1125)
-+|+-...... ...+.++..--+++...|--+....
T Consensus 216 --------------------------LFYD~~~K~~I---------~D~~~~LaDF~~~~LG~~~~~~~~~--------- 251 (641)
T KOG0352|consen 216 --------------------------LFYDNHMKSFI---------TDCLTVLADFSSSNLGKHEKASQNK--------- 251 (641)
T ss_pred --------------------------hhHHHHHHHHh---------hhHhHhHHHHHHHhcCChhhhhcCC---------
Confidence 01111110000 0011121111122221111110000
Q ss_pred hhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeec
Q 001197 714 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 793 (1125)
Q Consensus 714 ~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLST 793 (1125)
| ....--||||......+.|+-.|..+|+...-+|.+.+..+|..+-+.|..++.+ +|+.|
T Consensus 252 ----K------------~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P---vI~AT 312 (641)
T KOG0352|consen 252 ----K------------TFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP---VIAAT 312 (641)
T ss_pred ----C------------CcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC---EEEEE
Confidence 0 0012359999999999999999999999999999999999999999999998887 68999
Q ss_pred cccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEE
Q 001197 794 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFV 840 (1125)
Q Consensus 794 rAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~Vyr 840 (1125)
-+.|.|++-++...||+.|++-|.+.|.|--|||+|-|-..-|+.|+
T Consensus 313 ~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 313 VSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred eccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeee
Confidence 99999999999999999999999999999999999999888888886
No 111
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.50 E-value=5.4e-13 Score=164.59 Aligned_cols=318 Identities=18% Similarity=0.230 Sum_probs=202.6
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHH-HHHHcc---CCCCCE-EEEcCc-ccHHHHHHH---H
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA-YLLENK---GVTGPH-VIVAPK-AVLPNWINE---F 476 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~-~L~e~~---~~~gp~-LIVvP~-sll~qW~~E---f 476 (1125)
..++|-|-.++-.+.+ +...|--..+|+|||+.-+..+. +..... ...||+ ||+||+ -+..|-.++ |
T Consensus 386 ~k~~~IQ~qAiP~Ims----GrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf 461 (997)
T KOG0334|consen 386 EKPTPIQAQAIPAIMS----GRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKF 461 (997)
T ss_pred CCCcchhhhhcchhcc----CcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHH
Confidence 4677888877766655 77788888999999988744433 332221 123665 889999 555564444 4
Q ss_pred HhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH----Hhh-hccCeeEEEEcCCcccCCh--hhHH
Q 001197 477 STWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR----QYL-KKVQWIYMIVDEGHRLKNH--ECAL 549 (1125)
Q Consensus 477 ~k~~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~----~~L-~ki~w~~VIIDEAHriKN~--~Skl 549 (1125)
.+......+.+|.|....... ..+. ....|+|+|...++.-. ..+ .-.+-.++|+|||.+|-.. .-..
T Consensus 462 ~k~l~ir~v~vygg~~~~~qi--aelk---Rg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~ 536 (997)
T KOG0334|consen 462 LKLLGIRVVCVYGGSGISQQI--AELK---RGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQI 536 (997)
T ss_pred HhhcCceEEEecCCccHHHHH--HHHh---cCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCccc
Confidence 444434455667776544322 2222 23789999987765422 112 2234669999999997421 1111
Q ss_pred HHHHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhh
Q 001197 550 AKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPF 629 (1125)
Q Consensus 550 skaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pf 629 (1125)
+..|..+ .|.. ....|...|. -
T Consensus 537 ~~Ii~nl---------------------------rpdr--QtvlfSatfp-----------------------------r 558 (997)
T KOG0334|consen 537 TRILQNL---------------------------RPDR--QTVLFSATFP-----------------------------R 558 (997)
T ss_pred chHHhhc---------------------------chhh--hhhhhhhhhh-----------------------------H
Confidence 2222222 1110 0001111110 0
Q ss_pred hhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhH
Q 001197 630 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRK 709 (1125)
Q Consensus 630 lLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~ 709 (1125)
.+..++..|.. +|- . +-|.. ...+|..+. +.-.+|.
T Consensus 559 ~m~~la~~vl~-~Pv-e---iiv~~---~svV~k~V~----------------------q~v~V~~-------------- 594 (997)
T KOG0334|consen 559 SMEALARKVLK-KPV-E---IIVGG---RSVVCKEVT----------------------QVVRVCA-------------- 594 (997)
T ss_pred HHHHHHHHhhc-CCe-e---EEEcc---ceeEeccce----------------------EEEEEec--------------
Confidence 12222333433 331 1 11110 000000000 0001111
Q ss_pred HHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEE
Q 001197 710 EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMF 789 (1125)
Q Consensus 710 ~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~Vf 789 (1125)
..+.||..|.++|..... ..++||||+...-+|.|..-|...|+....|||..+..+|...|.+|+++... +
T Consensus 595 ----~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~---L 666 (997)
T KOG0334|consen 595 ----IENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVN---L 666 (997)
T ss_pred ----CchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCce---E
Confidence 135688889999987765 77899999999999999999999999999999999999999999999986654 8
Q ss_pred EeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeC
Q 001197 790 LLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 844 (1125)
Q Consensus 790 LLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~ 844 (1125)
|+.|.....||+......||+||.+---..|.+|.||++|-|-+- ..|.|++.
T Consensus 667 LvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 667 LVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred EEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 999999999999999999999999988888999999999998776 66667766
No 112
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.49 E-value=6.6e-11 Score=147.31 Aligned_cols=124 Identities=23% Similarity=0.213 Sum_probs=108.2
Q ss_pred cchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccc
Q 001197 716 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 795 (1125)
Q Consensus 716 S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrA 795 (1125)
.+++..|...|......|.++||||.....++.|..+|...|+++..++|.++..+|..++..|..+... +|++|..
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~---vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCce---EEEEeCH
Confidence 3567778888888888999999999999999999999999999999999999999999999999886643 6889999
Q ss_pred cccccCCCCCCEEEEeCC-----CCChhhHHHHHhhhcccCCCCcEEEEEEEeCC
Q 001197 796 GGLGLNLQTADTVIIFDS-----DWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 845 (1125)
Q Consensus 796 GG~GLNLq~Ad~VIi~D~-----~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~ 845 (1125)
.+.|++++.++.||++|. +-++..++|++||++|- +.-.++.|++..
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~---~~G~~i~~~~~~ 557 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN---VNGKVILYADKI 557 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC---CCCEEEEEecCC
Confidence 999999999999999997 45889999999999994 234566666643
No 113
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.47 E-value=1.9e-12 Score=143.21 Aligned_cols=315 Identities=15% Similarity=0.187 Sum_probs=229.6
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCCceE
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAA 485 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~~~v 485 (1125)
+.||.|+.+++-... +...+|..++|-||++..-..+ |. ..|-.|||||+ |++....-.++...-+...
T Consensus 94 kfrplq~~ain~~ma----~ed~~lil~tgggkslcyqlpa--l~----adg~alvi~plislmedqil~lkqlgi~as~ 163 (695)
T KOG0353|consen 94 KFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQLPA--LC----ADGFALVICPLISLMEDQILQLKQLGIDASM 163 (695)
T ss_pred hcChhHHHHhhhhhc----cCceEEEEeCCCccchhhhhhH--Hh----cCCceEeechhHHHHHHHHHHHHHhCcchhh
Confidence 789999999987765 7778999999999996542111 11 24678999999 8888888888888766666
Q ss_pred EEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHh-------hhccCeeEEEEcCCcccCC------hhhHHHHH
Q 001197 486 VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY-------LKKVQWIYMIVDEGHRLKN------HECALAKT 552 (1125)
Q Consensus 486 ivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~-------L~ki~w~~VIIDEAHriKN------~~Sklska 552 (1125)
+-...++.+-+.....+.+....|.++.+|++.+.+...+ +..-.|.+|-|||+|.... +..+....
T Consensus 164 lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~i 243 (695)
T KOG0353|consen 164 LNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGI 243 (695)
T ss_pred ccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHH
Confidence 6666777777777777777778899999999998776544 3344788999999998743 33344455
Q ss_pred H-HccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhh
Q 001197 553 I-SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 631 (1125)
Q Consensus 553 L-~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflL 631 (1125)
| +.|+....++||+|...+-+.|.-.+|..- ..-.|..-|+.|
T Consensus 244 lkrqf~~~~iigltatatn~vl~d~k~il~ie------~~~tf~a~fnr~------------------------------ 287 (695)
T KOG0353|consen 244 LKRQFKGAPIIGLTATATNHVLDDAKDILCIE------AAFTFRAGFNRP------------------------------ 287 (695)
T ss_pred HHHhCCCCceeeeehhhhcchhhHHHHHHhHH------hhheeecccCCC------------------------------
Confidence 5 678899999999999888887776655321 011222223322
Q ss_pred hhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHH
Q 001197 632 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEE 711 (1125)
Q Consensus 632 RR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~ 711 (1125)
.....++--|-+. ++
T Consensus 288 ------------nl~yev~qkp~n~-----------------------------------------------------dd 302 (695)
T KOG0353|consen 288 ------------NLKYEVRQKPGNE-----------------------------------------------------DD 302 (695)
T ss_pred ------------CceeEeeeCCCCh-----------------------------------------------------HH
Confidence 1111111100000 00
Q ss_pred HHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEe
Q 001197 712 IIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 791 (1125)
Q Consensus 712 li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLL 791 (1125)
. .+-+.+++.. .-.|..-||||-+..-.+.+...|...|+..--++..+.+.+|.-+-..|-.+... +++
T Consensus 303 ~------~edi~k~i~~-~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiq---viv 372 (695)
T KOG0353|consen 303 C------IEDIAKLIKG-DFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQ---VIV 372 (695)
T ss_pred H------HHHHHHHhcc-ccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceE---EEE
Confidence 0 0111111111 12467789999999999999999999999999999999999999999999887755 588
Q ss_pred eccccccccCCCCCCEEEEeCCCCChhhHHH-------------------------------------------HHhhhc
Q 001197 792 STRAGGLGLNLQTADTVIIFDSDWNPQMDQQ-------------------------------------------AEDRAH 828 (1125)
Q Consensus 792 STrAGG~GLNLq~Ad~VIi~D~~WNP~~d~Q-------------------------------------------AigRah 828 (1125)
.|-|.|.||+-+....||+-..|-+...|.| --||++
T Consensus 373 atvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgrag 452 (695)
T KOG0353|consen 373 ATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAG 452 (695)
T ss_pred EEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccc
Confidence 9999999999999999999999999999999 568999
Q ss_pred ccCCCCcEEEEEEE
Q 001197 829 RIGQKKEVRVFVLV 842 (1125)
Q Consensus 829 RIGQkk~V~VyrLI 842 (1125)
|-|++-.|..|+=.
T Consensus 453 rd~~~a~cilyy~~ 466 (695)
T KOG0353|consen 453 RDDMKADCILYYGF 466 (695)
T ss_pred cCCCcccEEEEech
Confidence 99999997766543
No 114
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.46 E-value=1.1e-11 Score=155.80 Aligned_cols=308 Identities=19% Similarity=0.273 Sum_probs=205.7
Q ss_pred CCccHHHHHHHHHHHHhhccC--CCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHH-HHHHHHhhCCC
Q 001197 406 GELRAYQLEGLQWMLSLFNNN--LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN-WINEFSTWAPS 482 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~--~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~q-W~~Ef~k~~p~ 482 (1125)
.+--|-|..+++-+..-...+ ..-+||.++|.|||-.|+-.+-..... .+-+.|+||+.+|.+ --+.|..-|.+
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---GKQVAvLVPTTlLA~QHy~tFkeRF~~ 669 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---GKQVAVLVPTTLLAQQHYETFKERFAG 669 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---CCeEEEEcccHHhHHHHHHHHHHHhcC
Confidence 577889999999888765443 345899999999999987443222222 246899999988755 34445544333
Q ss_pred ----ceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHcc-c
Q 001197 483 ----IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-Q 557 (1125)
Q Consensus 483 ----~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l-~ 557 (1125)
+.++.-.-+.++.+.+...+.. |..||||-|+..+.++..+ .+-.+|||||=||+.=.+ -..|+.+ .
T Consensus 670 fPV~I~~LSRF~s~kE~~~il~~la~--G~vDIvIGTHrLL~kdv~F---kdLGLlIIDEEqRFGVk~---KEkLK~Lr~ 741 (1139)
T COG1197 670 FPVRIEVLSRFRSAKEQKEILKGLAE--GKVDIVIGTHRLLSKDVKF---KDLGLLIIDEEQRFGVKH---KEKLKELRA 741 (1139)
T ss_pred CCeeEEEecccCCHHHHHHHHHHHhc--CCccEEEechHhhCCCcEE---ecCCeEEEechhhcCccH---HHHHHHHhc
Confidence 3333333445555666666555 8999999999999876532 145699999999985432 3344455 4
Q ss_pred cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHHH
Q 001197 558 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 637 (1125)
Q Consensus 558 s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~d 637 (1125)
.-..|-||||||.-.+.= +|.. ++.|.
T Consensus 742 ~VDvLTLSATPIPRTL~M--sm~G-------------------------------------iRdlS-------------- 768 (1139)
T COG1197 742 NVDVLTLSATPIPRTLNM--SLSG-------------------------------------IRDLS-------------- 768 (1139)
T ss_pred cCcEEEeeCCCCcchHHH--HHhc-------------------------------------chhhh--------------
Confidence 568899999999876541 1110 00000
Q ss_pred HhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhcc
Q 001197 638 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 717 (1125)
Q Consensus 638 V~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S~ 717 (1125)
|. .-||.....|.--..+ +++
T Consensus 769 vI-~TPP~~R~pV~T~V~~-----------------------------------------------~d~----------- 789 (1139)
T COG1197 769 VI-ATPPEDRLPVKTFVSE-----------------------------------------------YDD----------- 789 (1139)
T ss_pred hc-cCCCCCCcceEEEEec-----------------------------------------------CCh-----------
Confidence 00 1233322222111100 000
Q ss_pred hHHHH-HHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecc
Q 001197 718 KFELL-DRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 794 (1125)
Q Consensus 718 Kle~L-~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~--gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTr 794 (1125)
.++ ..++.++ ..|..|-...+.+..+.-+...|... ...+...||.|+..+-+.++..|.++..+ +|+||-
T Consensus 790 --~~ireAI~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~d---VLv~TT 863 (1139)
T COG1197 790 --LLIREAILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYD---VLVCTT 863 (1139)
T ss_pred --HHHHHHHHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCC---EEEEee
Confidence 001 1122222 34667777777888888888888753 66799999999999999999999998877 699999
Q ss_pred ccccccCCCCCCEEEEeCCC-CChhhHHHHHhhhcccCCCCcEEEEEEEeC
Q 001197 795 AGGLGLNLQTADTVIIFDSD-WNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 844 (1125)
Q Consensus 795 AGG~GLNLq~Ad~VIi~D~~-WNP~~d~QAigRahRIGQkk~V~VyrLIt~ 844 (1125)
.-..||++++|||+|+-+.| +--++..|--||++|-. +.-+.|-|+..
T Consensus 864 IIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~ 912 (1139)
T COG1197 864 IIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPP 912 (1139)
T ss_pred eeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc--ceEEEEEeecC
Confidence 99999999999999999988 57899999999999954 34566666653
No 115
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=2.3e-11 Score=150.94 Aligned_cols=398 Identities=15% Similarity=0.169 Sum_probs=225.4
Q ss_pred CCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccH----HHHHHHHHhh
Q 001197 404 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL----PNWINEFSTW 479 (1125)
Q Consensus 404 ~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll----~qW~~Ef~k~ 479 (1125)
.|-..++-|+-|---| +.|-|.-..+|-|||+++...+. +.... ...+.||+|+.-| ..|...|..|
T Consensus 79 lgm~~ydVQliGgl~L------~~G~IaEm~TGEGKTL~a~lp~~-l~al~--g~~VhIvT~ndyLA~RD~e~m~~l~~~ 149 (908)
T PRK13107 79 FEMRHFDVQLLGGMVL------DSNRIAEMRTGEGKTLTATLPAY-LNALT--GKGVHVITVNDYLARRDAENNRPLFEF 149 (908)
T ss_pred hCCCcCchHHhcchHh------cCCccccccCCCCchHHHHHHHH-HHHhc--CCCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 3557788888776433 34557778999999998754443 22221 2358999998554 3488888888
Q ss_pred CCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHH-----HHh----HHhhhccCeeEEEEcCCcccCChhhHHH
Q 001197 480 APSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLI-----MRD----RQYLKKVQWIYMIVDEGHRLKNHECALA 550 (1125)
Q Consensus 480 ~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l-----~kd----~~~L~ki~w~~VIIDEAHriKN~~Skls 550 (1125)
+ ++.+-+..+........ . .-.++|+++|..-| ... ...+-...+.++||||+..+--.
T Consensus 150 l-Glsv~~i~~~~~~~~r~----~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiD----- 217 (908)
T PRK13107 150 L-GLTVGINVAGLGQQEKK----A--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILID----- 217 (908)
T ss_pred c-CCeEEEecCCCCHHHHH----h--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccc-----
Confidence 7 66666555543321111 0 02578999996554 222 11122357889999999987543
Q ss_pred HHHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCC----ChHHHHH--HhcccccccCcccCChHHHHHHHHHH--
Q 001197 551 KTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFN----SVENFEE--WFNAPFKDRGQVALTDEEQLLIIRRL-- 622 (1125)
Q Consensus 551 kaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~----s~~~F~~--~f~~p~~~~~~~~~~~ee~~~~i~rL-- 622 (1125)
.++.-|++||.+ ... .++|..++-+-..+.. ....|.. .|.. ......+.+++.....+-.-|
T Consensus 218 ------EArtPLIISg~~-~~~-~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~i-dek~~~v~LTe~G~~~~e~~l~~ 288 (908)
T PRK13107 218 ------EARTPLIISGAA-EDS-SELYIKINTLIPNLIRQDKEDTEEYVGEGDYSI-DEKAKQVHFTERGQEKVENLLIE 288 (908)
T ss_pred ------cCCCceeecCCC-ccc-hHHHHHHHHHHHHHHhhhhccccccCCCCCEEE-ecCCCeeeechHHHHHHHHHHHh
Confidence 244567888854 333 4566554422111110 0000000 0000 011223344443221111111
Q ss_pred ----------------------HhhhhhhhhhhhHHHHhhhCCCCeEEEEEecCC-------HHHHHHHHHHHhhccccc
Q 001197 623 ----------------------HHVIRPFILRRKKDEVEKYLPGKSQVILKCDMS-------AWQKVYYQQVTDVGRVGL 673 (1125)
Q Consensus 623 ----------------------~~vL~pflLRR~K~dV~~~LP~k~e~vi~~~ms-------~~Q~~lY~~i~~~~~~~l 673 (1125)
...|+-+.+ .+.++.--+-+. +.++--..| .++.-+-+.+..+....+
T Consensus 289 ~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~l--f~~d~dYiV~dg-~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I 365 (908)
T PRK13107 289 RGMLAEGDSLYSAANISLLHHVNAALRAHTL--FEKDVDYIVQDN-EVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHI 365 (908)
T ss_pred CCcccCcccccCchhhHHHHHHHHHHHHHHH--HhcCCceEEECC-EEEEEECCCCCCCCCCccchHHHHHHHHhcCCCC
Confidence 111111110 000110000011 111111111 122223333322222211
Q ss_pred ccCC--CccchHHHHH-----------------HHHHHhhCCCcccccccchhhH----HH-HHhhcchHHHHHHHhHHh
Q 001197 674 DTGT--GKSKSLQNLS-----------------MQLRKCCNHPYLFVGEYNMWRK----EE-IIRASGKFELLDRLLPKL 729 (1125)
Q Consensus 674 ~~~~--~k~~~l~n~~-----------------~qLRkicnhP~L~~~~~~~~~~----~~-li~~S~Kle~L~~lL~kl 729 (1125)
.... ..+-.++|+. ..+.++.+-+.+..+...+... +. ......|+.++.+-+..+
T Consensus 366 ~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~ 445 (908)
T PRK13107 366 QNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDC 445 (908)
T ss_pred CCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHH
Confidence 1110 1111223322 2345555544444432222110 01 123357888999999999
Q ss_pred hhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCC-----
Q 001197 730 RKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT----- 804 (1125)
Q Consensus 730 ~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~----- 804 (1125)
++.|..|||||.+....+.+..+|...|+++..|++..+..++..+...|+.+. ++|+|..+|+|+++.-
T Consensus 446 ~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATnmAGRGTDIkLggn~~ 520 (908)
T PRK13107 446 RERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATNMAGRGTDIVLGGNWN 520 (908)
T ss_pred HHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecCCcCCCcceecCCchH
Confidence 999999999999999999999999999999999999999999999999998855 6999999999999762
Q ss_pred --------------------------------CCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEE
Q 001197 805 --------------------------------ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 839 (1125)
Q Consensus 805 --------------------------------Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~Vy 839 (1125)
-=+||.-..+-|-..+.|..||++|.|..-....|
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~ 587 (908)
T PRK13107 521 MEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFY 587 (908)
T ss_pred HhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEE
Confidence 23789999999999999999999999987654443
No 116
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=2.8e-11 Score=150.49 Aligned_cols=391 Identities=18% Similarity=0.208 Sum_probs=221.9
Q ss_pred CCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccH-HH---HHHHHHhh
Q 001197 404 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL-PN---WINEFSTW 479 (1125)
Q Consensus 404 ~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll-~q---W~~Ef~k~ 479 (1125)
.|-.+++-|+-|.--| +.|.|.-..||.|||+++...+......+ . .+-||+|+..| .+ |...+-++
T Consensus 78 lg~~~~dvQlig~l~L------~~G~Iaem~TGeGKTLva~lpa~l~aL~G--~-~V~IvTpn~yLA~rd~e~~~~l~~~ 148 (830)
T PRK12904 78 LGMRHFDVQLIGGMVL------HEGKIAEMKTGEGKTLVATLPAYLNALTG--K-GVHVVTVNDYLAKRDAEWMGPLYEF 148 (830)
T ss_pred hCCCCCccHHHhhHHh------cCCchhhhhcCCCcHHHHHHHHHHHHHcC--C-CEEEEecCHHHHHHHHHHHHHHHhh
Confidence 3567888888887433 24558889999999998754442122221 2 35689999554 33 55555555
Q ss_pred CCCceEEEEcCChh--HHHHHHHHHHhhcCCccEEEecHHHHH----HhH-----HhhhccCeeEEEEcCCcccCChhhH
Q 001197 480 APSIAAVVYDGRPD--ERKAMREEFFSERGRFNVLITHYDLIM----RDR-----QYLKKVQWIYMIVDEGHRLKNHECA 548 (1125)
Q Consensus 480 ~p~~~vivy~G~~~--~R~~l~~~~~~~~~~fdVvITTYe~l~----kd~-----~~L~ki~w~~VIIDEAHriKN~~Sk 548 (1125)
. ++.+.+..|... .++.. -..+|++.|..-+- ++. ..+....+.++|||||.+|-=.
T Consensus 149 L-Glsv~~i~~~~~~~er~~~--------y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLID--- 216 (830)
T PRK12904 149 L-GLSVGVILSGMSPEERREA--------YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILID--- 216 (830)
T ss_pred c-CCeEEEEcCCCCHHHHHHh--------cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheec---
Confidence 5 566666655432 22221 24789999977662 111 1123347889999999987422
Q ss_pred HHHHHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHH------------
Q 001197 549 LAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQL------------ 616 (1125)
Q Consensus 549 lskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~------------ 616 (1125)
.+..-+++||.+- ...++|..++-+-+.+-... . |.. ......+.+++....
T Consensus 217 --------eArtpLiiSg~~~--~~~~~y~~~~~~v~~l~~~~-d----y~v-de~~~~v~lte~G~~~~e~~~~~~~ly 280 (830)
T PRK12904 217 --------EARTPLIISGPAE--DSSELYKRANKIVPTLEKEG-D----YTV-DEKSRTVGLTEEGIEKAEKLLGIENLY 280 (830)
T ss_pred --------cCCCceeeECCCC--cccHHHHHHHHHHHhcCCCC-C----eEE-EcCCCeeeECHHHHHHHHHHhCCcccc
Confidence 2334577787653 22345554443322211100 0 000 001111222222111
Q ss_pred -----HHHHHHHhhhhhh-hhhhhHHHHhhhCCCCeEEEEEecCC-------HHHHHHHHHHHhhcccccccCC--Cccc
Q 001197 617 -----LIIRRLHHVIRPF-ILRRKKDEVEKYLPGKSQVILKCDMS-------AWQKVYYQQVTDVGRVGLDTGT--GKSK 681 (1125)
Q Consensus 617 -----~~i~rL~~vL~pf-lLRR~K~dV~~~LP~k~e~vi~~~ms-------~~Q~~lY~~i~~~~~~~l~~~~--~k~~ 681 (1125)
.....+...|+-. ++.+ ++.--+.+....+| -++| .+..-+-+.+..+....+.... ...-
T Consensus 281 ~~~~~~~~~~i~~AL~A~~l~~~---d~dYiV~dg~V~iv-De~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~I 356 (830)
T PRK12904 281 DPENIALVHHLNQALRAHELFKR---DVDYIVKDGEVVIV-DEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASI 356 (830)
T ss_pred ChhhhHHHHHHHHHHHHHHHHhc---CCcEEEECCEEEEE-ECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeee
Confidence 1111122222211 1111 11100111111111 1222 1222233333222211111100 0011
Q ss_pred hHHH-----------------HHHHHHHhhCCCcccccccchhhHHH---H--HhhcchHHHHHHHhHHhhhCCCEEEEE
Q 001197 682 SLQN-----------------LSMQLRKCCNHPYLFVGEYNMWRKEE---I--IRASGKFELLDRLLPKLRKSGHRVLLF 739 (1125)
Q Consensus 682 ~l~n-----------------~~~qLRkicnhP~L~~~~~~~~~~~~---l--i~~S~Kle~L~~lL~kl~~~g~KVLIF 739 (1125)
+++| -...+.++.+-+.+..+...+....+ . .....|+..+.+.+..+...|..||||
T Consensus 357 t~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIf 436 (830)
T PRK12904 357 TFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVG 436 (830)
T ss_pred eHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 1122 22345666665555544332211110 1 123468999999999988999999999
Q ss_pred eccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCC--------------
Q 001197 740 SQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTA-------------- 805 (1125)
Q Consensus 740 sq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~A-------------- 805 (1125)
|.+....+.|...|...|+++..|+|. ..+|+..|..|..+... ++|+|..+|+|+++.-.
T Consensus 437 t~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~---VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~ 511 (830)
T PRK12904 437 TVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA---VTIATNMAGRGTDIKLGGNPEMLAAALLEEE 511 (830)
T ss_pred eCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce---EEEecccccCCcCccCCCchhhhhhhhhhhh
Confidence 999999999999999999999999995 77999999999876655 79999999999996542
Q ss_pred ------------------------CEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEE
Q 001197 806 ------------------------DTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFV 840 (1125)
Q Consensus 806 ------------------------d~VIi~D~~WNP~~d~QAigRahRIGQkk~V~Vyr 840 (1125)
=+||.-..+-|-..+.|..||++|.|..-..+.|-
T Consensus 512 ~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~l 570 (830)
T PRK12904 512 TEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL 570 (830)
T ss_pred hhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEE
Confidence 37888889999999999999999999987765553
No 117
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.44 E-value=8.2e-12 Score=160.98 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=87.8
Q ss_pred CCCEEEEEeccchHHHHHHHHHHhCCCe---EEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEE
Q 001197 732 SGHRVLLFSQMTRLMDILEIYLKLNDFK---FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 808 (1125)
Q Consensus 732 ~g~KVLIFsq~t~~ldiLe~~L~~~gi~---~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~V 808 (1125)
....+|||++....++.+.+.|...+++ ++.++|+++.++|..+++.+ . .+-+|+||..++.||++.++++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~----g-~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH----S-GRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc----C-CeeEEEeccHHhhccccCcceEE
Confidence 4568999999999999999999887764 67899999999999887653 1 23379999999999999999999
Q ss_pred EEeC---------------CCCCh---hhHHHHHhhhcccCCCCcEEEEEEEeCCCH
Q 001197 809 IIFD---------------SDWNP---QMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 847 (1125)
Q Consensus 809 Ii~D---------------~~WNP---~~d~QAigRahRIGQkk~V~VyrLIt~~TI 847 (1125)
|.++ .+-.| ..+.||.||++|.+ +-.+|+|+++...
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d~ 413 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDDF 413 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHHH
Confidence 9975 23333 67899999999983 6678899987543
No 118
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.43 E-value=1.5e-11 Score=150.85 Aligned_cols=325 Identities=18% Similarity=0.199 Sum_probs=189.6
Q ss_pred hhccCCCeEEEcCCCchHHHHHHHHHHHHHHccC-------CCCCEEEEcCc-ccHHHHHHHHHhhCC--CceEEEEcCC
Q 001197 422 LFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-------VTGPHVIVAPK-AVLPNWINEFSTWAP--SIAAVVYDGR 491 (1125)
Q Consensus 422 l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~-------~~gp~LIVvP~-sll~qW~~Ef~k~~p--~~~vivy~G~ 491 (1125)
.|..+.|.|++.++|+|||..+...|..++..+. ..-+++-|+|. +|..--...|.+-+. ++.|.-+.|.
T Consensus 122 aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD 201 (1230)
T KOG0952|consen 122 AYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGD 201 (1230)
T ss_pred hhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCc
Confidence 4778899999999999999999877777666421 12367899997 554433333333332 5788889997
Q ss_pred hhHHHHHHHHHHhhcCCccEEEecHHHHH-------HhHHhhhccCeeEEEEcCCcccCChhh-----HHHHHHHc----
Q 001197 492 PDERKAMREEFFSERGRFNVLITHYDLIM-------RDRQYLKKVQWIYMIVDEGHRLKNHEC-----ALAKTISG---- 555 (1125)
Q Consensus 492 ~~~R~~l~~~~~~~~~~fdVvITTYe~l~-------kd~~~L~ki~w~~VIIDEAHriKN~~S-----klskaL~~---- 555 (1125)
...-+. .+ ...+|+|||+|.+- .+...+. ...+|||||.|.+..... -.++.++.
T Consensus 202 ~ql~~t---ei----~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vess 272 (1230)
T KOG0952|consen 202 TQLTKT---EI----ADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESS 272 (1230)
T ss_pred chhhHH---HH----HhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeeehhhcCcccchHHHHHHHHHHHHHhh
Confidence 654322 12 46789999998652 1122222 355899999999977543 33333321
Q ss_pred cccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhH
Q 001197 556 YQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 635 (1125)
Q Consensus 556 l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K 635 (1125)
...-+.++||||- . |+.| +-.||.-.+....-.|+..|. |.-|+
T Consensus 273 qs~IRivgLSATl-P-N~eD---vA~fL~vn~~~glfsFd~~yR----------------------------PvpL~--- 316 (1230)
T KOG0952|consen 273 QSMIRIVGLSATL-P-NYED---VARFLRVNPYAGLFSFDQRYR----------------------------PVPLT--- 316 (1230)
T ss_pred hhheEEEEeeccC-C-CHHH---HHHHhcCCCccceeeeccccc----------------------------cccee---
Confidence 2345779999993 2 2333 334454433333333443332 11100
Q ss_pred HHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhh
Q 001197 636 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 715 (1125)
Q Consensus 636 ~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~ 715 (1125)
.....+.+.=...|.... .
T Consensus 317 ---------~~~iG~k~~~~~~~~~~~----------------------------------------------------d 335 (1230)
T KOG0952|consen 317 ---------QGFIGIKGKKNRQQKKNI----------------------------------------------------D 335 (1230)
T ss_pred ---------eeEEeeecccchhhhhhH----------------------------------------------------H
Confidence 000011111000000000 0
Q ss_pred cchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHH----hCCC-------------------eEEEecCCCCHHHH
Q 001197 716 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLK----LNDF-------------------KFLRLDGSTKTEER 772 (1125)
Q Consensus 716 S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~----~~gi-------------------~~~rLdGsts~~eR 772 (1125)
..+.+. +.++...||.|+||+....----.+..|. ..|. .+...+.++.-.+|
T Consensus 336 ~~~~~k----v~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR 411 (1230)
T KOG0952|consen 336 EVCYDK----VVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDR 411 (1230)
T ss_pred HHHHHH----HHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhH
Confidence 011111 22334569999999987653333333332 1222 13445677888999
Q ss_pred HHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhh----------HHHHHhhhcccCCCCcEEEEEEE
Q 001197 773 GTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQM----------DQQAEDRAHRIGQKKEVRVFVLV 842 (1125)
Q Consensus 773 ~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~----------d~QAigRahRIGQkk~V~VyrLI 842 (1125)
+-+-+.|..|..+ +|+||.....|+||++--.+|-=-.-|++.. .+|-.|||+|.+=.+.-..+-+-
T Consensus 412 ~l~E~~F~~G~i~---vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiT 488 (1230)
T KOG0952|consen 412 QLVEKEFKEGHIK---VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIIT 488 (1230)
T ss_pred HHHHHHHhcCCce---EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEe
Confidence 9999999997766 6999999999999996555554445566543 67999999998754443333333
Q ss_pred eC-------------CCHHHHHHHHHHHHh
Q 001197 843 SV-------------GSIEEVILERAKQKM 859 (1125)
Q Consensus 843 t~-------------~TIEE~Il~r~~~Kl 859 (1125)
+. +-||...+..+..-+
T Consensus 489 t~dkl~~Y~sLl~~~~piES~~~~~L~dnL 518 (1230)
T KOG0952|consen 489 TRDKLDHYESLLTGQNPIESQLLPCLIDNL 518 (1230)
T ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHhh
Confidence 32 456777776665544
No 119
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.4e-12 Score=146.33 Aligned_cols=313 Identities=18% Similarity=0.231 Sum_probs=203.4
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHH-HHHHhhCCC--c
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI-NEFSTWAPS--I 483 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~-~Ef~k~~p~--~ 483 (1125)
++-.-|..|+--.+. +.+.+.-...|+|||.+-...+...........-+||++|...+.+.. .-...+.+. .
T Consensus 48 kPSaIQqraI~p~i~----G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~ 123 (397)
T KOG0327|consen 48 KPSAIQQRAILPCIK----GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDV 123 (397)
T ss_pred CchHHHhcccccccc----CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccce
Confidence 566678888765554 788888888999999986555554443322233468999997665543 334445544 4
Q ss_pred eEEEEcCChhHH-HHHHHHHHhhcCCccEEEecHHHHHHh--HHhhhccCeeEEEEcCCcccCChh--hHHHHHHHccc-
Q 001197 484 AAVVYDGRPDER-KAMREEFFSERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDEGHRLKNHE--CALAKTISGYQ- 557 (1125)
Q Consensus 484 ~vivy~G~~~~R-~~l~~~~~~~~~~fdVvITTYe~l~kd--~~~L~ki~w~~VIIDEAHriKN~~--SklskaL~~l~- 557 (1125)
.+....|...-+ .... +.. ....|++.|...+..- ...|......+.|+|||..+...+ .+.......++
T Consensus 124 ~v~~~igg~~~~~~~~~--i~~--~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~ 199 (397)
T KOG0327|consen 124 SVHACIGGTNVRREDQA--LLK--DKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPS 199 (397)
T ss_pred eeeeecCcccchhhhhh--hhc--cCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCc
Confidence 555444433222 2211 111 4577999998766432 235666678899999999886533 34444445553
Q ss_pred cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHHH
Q 001197 558 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 637 (1125)
Q Consensus 558 s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~d 637 (1125)
....+++|||- +.++.-+- .+|...|. .+-+.|
T Consensus 200 ~vQv~l~SAT~----p~~vl~vt--------------~~f~~~pv---------------------------~i~vkk-- 232 (397)
T KOG0327|consen 200 DVQVVLLSATM----PSDVLEVT--------------KKFMREPV---------------------------RILVKK-- 232 (397)
T ss_pred chhheeecccC----cHHHHHHH--------------HHhccCce---------------------------EEEecc--
Confidence 34567777773 11110000 00000010 000000
Q ss_pred HhhhCCCCeEEEEEecCC-HHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhc
Q 001197 638 VEKYLPGKSQVILKCDMS-AWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 716 (1125)
Q Consensus 638 V~~~LP~k~e~vi~~~ms-~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S 716 (1125)
..+| +.++.+|-.. ...
T Consensus 233 --------------~~ltl~gikq~~i~v------------------------------------------------~k~ 250 (397)
T KOG0327|consen 233 --------------DELTLEGIKQFYINV------------------------------------------------EKE 250 (397)
T ss_pred --------------hhhhhhheeeeeeec------------------------------------------------ccc
Confidence 0011 0011111000 001
Q ss_pred chHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecccc
Q 001197 717 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 796 (1125)
Q Consensus 717 ~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAG 796 (1125)
.|+..|..+.. .-...+|||+...-++.|...|..+|++...++|.+...+|..++..|+.+.+. +|++|...
T Consensus 251 ~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr---vlIttdl~ 323 (397)
T KOG0327|consen 251 EKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR---VLITTDLL 323 (397)
T ss_pred ccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce---EEeecccc
Confidence 16666766666 345689999999999999999999999999999999999999999999998877 69999999
Q ss_pred ccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCC
Q 001197 797 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 845 (1125)
Q Consensus 797 G~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~ 845 (1125)
+.|++++.++.||+||.|-|+..|.+++||++|.|-+ -.+..++++.
T Consensus 324 argidv~~~slvinydlP~~~~~yihR~gr~gr~grk--g~~in~v~~~ 370 (397)
T KOG0327|consen 324 ARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRK--GVAINFVTEE 370 (397)
T ss_pred ccccchhhcceeeeeccccchhhhhhhcccccccCCC--ceeeeeehHh
Confidence 9999999999999999999999999999999999954 3445556554
No 120
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.41 E-value=2.1e-11 Score=138.23 Aligned_cols=308 Identities=20% Similarity=0.257 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHH-HHHHHHHccCC----CC-CEEEEcCc-ccHHHHHHHHHhh---C
Q 001197 411 YQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIA-LIAYLLENKGV----TG-PHVIVAPK-AVLPNWINEFSTW---A 480 (1125)
Q Consensus 411 YQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIa-li~~L~e~~~~----~g-p~LIVvP~-sll~qW~~Ef~k~---~ 480 (1125)
.|..++-.++. +.+.+--.-+|+|||...+- ++..++..+.. .| ..+|+||+ -+..|-...|.+. +
T Consensus 45 IQs~aIplaLE----gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c 120 (569)
T KOG0346|consen 45 IQSSAIPLALE----GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYC 120 (569)
T ss_pred hhhcccchhhc----CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHH
Confidence 46667766654 66666668899999988654 34444443322 23 35899998 6666666666653 4
Q ss_pred C-CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHh---hhccCeeEEEEcCCcccCChh--hHHHHHHH
Q 001197 481 P-SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKKVQWIYMIVDEGHRLKNHE--CALAKTIS 554 (1125)
Q Consensus 481 p-~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~---L~ki~w~~VIIDEAHriKN~~--SklskaL~ 554 (1125)
+ .++++-...+...- ..+ .+.. ..++|||+|+..+.+.... ...-...++|+|||.-+-... --+.....
T Consensus 121 ~k~lr~~nl~s~~sds-v~~-~~L~--d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~ 196 (569)
T KOG0346|consen 121 SKDLRAINLASSMSDS-VNS-VALM--DLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRS 196 (569)
T ss_pred HHhhhhhhhhcccchH-HHH-HHHc--cCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHH
Confidence 4 34444333222111 111 2222 6899999999998776432 222356789999999885533 23333334
Q ss_pred ccccc-eEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhh--hhhhh
Q 001197 555 GYQIQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVI--RPFIL 631 (1125)
Q Consensus 555 ~l~s~-~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL--~pflL 631 (1125)
.++.. ..+++|||- .. | +..|.+++ .|++|
T Consensus 197 ~LPr~~Q~~LmSATl-~d---D-------------------------------------------v~~LKkL~l~nPviL 229 (569)
T KOG0346|consen 197 HLPRIYQCFLMSATL-SD---D-------------------------------------------VQALKKLFLHNPVIL 229 (569)
T ss_pred hCCchhhheeehhhh-hh---H-------------------------------------------HHHHHHHhccCCeEE
Confidence 44322 346677773 11 1 11222211 23332
Q ss_pred hhhHHHHhhhCC--CC-eEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhh
Q 001197 632 RRKKDEVEKYLP--GK-SQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 708 (1125)
Q Consensus 632 RR~K~dV~~~LP--~k-~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~ 708 (1125)
.-+- .++| ++ ..+.+.|. +
T Consensus 230 kl~e----~el~~~dqL~Qy~v~cs--e---------------------------------------------------- 251 (569)
T KOG0346|consen 230 KLTE----GELPNPDQLTQYQVKCS--E---------------------------------------------------- 251 (569)
T ss_pred Eecc----ccCCCcccceEEEEEec--c----------------------------------------------------
Confidence 1111 1122 11 22233333 1
Q ss_pred HHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceE
Q 001197 709 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 788 (1125)
Q Consensus 709 ~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~V 788 (1125)
-.|+-+|..+|+ |.--..|.|||.+.....-.|.-+|..-|++-|.++|.++...|.-+|++||.+-.+
T Consensus 252 -------~DKflllyallK-L~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~Yd--- 320 (569)
T KOG0346|consen 252 -------EDKFLLLYALLK-LRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYD--- 320 (569)
T ss_pred -------chhHHHHHHHHH-HHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCccee---
Confidence 113333333332 222245899999999999999999999999999999999999999999999997644
Q ss_pred EEeecc--------------------------c---------cccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCC
Q 001197 789 FLLSTR--------------------------A---------GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQK 833 (1125)
Q Consensus 789 fLLSTr--------------------------A---------GG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQk 833 (1125)
+||.|+ + .+.||+.+..++||+||.|-++..|++|+||..|-|.+
T Consensus 321 ivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~ 400 (569)
T KOG0346|consen 321 IVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNK 400 (569)
T ss_pred EEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCC
Confidence 455555 1 14699999999999999999999999999999998866
Q ss_pred CcEEEEEEEeC
Q 001197 834 KEVRVFVLVSV 844 (1125)
Q Consensus 834 k~V~VyrLIt~ 844 (1125)
-. +..||..
T Consensus 401 Gt--alSfv~P 409 (569)
T KOG0346|consen 401 GT--ALSFVSP 409 (569)
T ss_pred Cc--eEEEecc
Confidence 54 4445543
No 121
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.40 E-value=7.5e-13 Score=118.77 Aligned_cols=81 Identities=37% Similarity=0.499 Sum_probs=75.7
Q ss_pred HHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhh
Q 001197 748 ILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRA 827 (1125)
Q Consensus 748 iLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRa 827 (1125)
.+..+|...++.+..++|+++..+|..+++.|+.+.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4677888889999999999999999999999998765 4789999999999999999999999999999999999999
Q ss_pred cccC
Q 001197 828 HRIG 831 (1125)
Q Consensus 828 hRIG 831 (1125)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 122
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.37 E-value=3e-11 Score=156.30 Aligned_cols=108 Identities=16% Similarity=0.127 Sum_probs=88.2
Q ss_pred CCCEEEEEeccchHHHHHHHHHHhCC---CeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEE
Q 001197 732 SGHRVLLFSQMTRLMDILEIYLKLND---FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 808 (1125)
Q Consensus 732 ~g~KVLIFsq~t~~ldiLe~~L~~~g---i~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~V 808 (1125)
....+|||+......+.+...|...+ +.++.++|+++.++|..++..+ . . .-+|+||..++.||++.++++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~-~-rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---S-G-RRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---C-C-ceEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998654 5688999999999999885543 2 1 2369999999999999999999
Q ss_pred EEeCCC-----------------C-ChhhHHHHHhhhcccCCCCcEEEEEEEeCCCH
Q 001197 809 IIFDSD-----------------W-NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 847 (1125)
Q Consensus 809 Ii~D~~-----------------W-NP~~d~QAigRahRIGQkk~V~VyrLIt~~TI 847 (1125)
|-++.. | +...+.||.||++|.| +-.+|+|+++...
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~ 406 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDF 406 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHH
Confidence 987732 1 4468999999999998 6678999987544
No 123
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.35 E-value=1.5e-11 Score=126.25 Aligned_cols=156 Identities=18% Similarity=0.288 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCC--ceEE
Q 001197 410 AYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS--IAAV 486 (1125)
Q Consensus 410 pYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~--~~vi 486 (1125)
|+|.+++.-+.. +.+.++..++|+|||..++..+...+... ..+.+||+||. +++.+-..++..++.. ..+.
T Consensus 2 ~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 2 PLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred HHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccc
Confidence 799999987763 67789999999999999886666555443 34589999998 7888888999998854 6777
Q ss_pred EEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHh--hhccCeeEEEEcCCcccCCh--hhHHHHHHHcc---ccc
Q 001197 487 VYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECALAKTISGY---QIQ 559 (1125)
Q Consensus 487 vy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~--L~ki~w~~VIIDEAHriKN~--~SklskaL~~l---~s~ 559 (1125)
.+.|...........+ . ...+|+|+|++.+...... +.-...++|||||+|.+-.. .......+..+ ...
T Consensus 77 ~~~~~~~~~~~~~~~~-~--~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~ 153 (169)
T PF00270_consen 77 LLHGGQSISEDQREVL-S--NQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNI 153 (169)
T ss_dssp EESTTSCHHHHHHHHH-H--TTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTS
T ss_pred cccccccccccccccc-c--ccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCC
Confidence 7666543221111111 1 5789999999999876553 12234789999999998652 22333333333 346
Q ss_pred eEEEeecCCCCCChH
Q 001197 560 RRLLLTGTPIQNSLQ 574 (1125)
Q Consensus 560 ~RLlLTGTPlqN~l~ 574 (1125)
+.+++||||- .++.
T Consensus 154 ~~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 154 QIILLSATLP-SNVE 167 (169)
T ss_dssp EEEEEESSST-HHHH
T ss_pred cEEEEeeCCC-hhHh
Confidence 7999999996 4444
No 124
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.33 E-value=9.3e-11 Score=147.85 Aligned_cols=347 Identities=18% Similarity=0.155 Sum_probs=208.5
Q ss_pred CCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHc-cCCCCCEEEEcCc-ccHHHHHHHHHhhCCC
Q 001197 405 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN-KGVTGPHVIVAPK-AVLPNWINEFSTWAPS 482 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~-~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~ 482 (1125)
+...+++|..++++.......+..++|..++|.|||..++.++.+.... ......++.|.|. +++.+-...+..++..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~ 272 (733)
T COG1203 193 EHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGL 272 (733)
T ss_pred CchhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcc
Confidence 3456999999999998877666578999999999999999988888776 2345567778888 5567788888888755
Q ss_pred ceEEEE--cCChhHHHHHHHHH---H-------hhcCCccEEEecHHHHHHh------HHhhhccCeeEEEEcCCcccCC
Q 001197 483 IAAVVY--DGRPDERKAMREEF---F-------SERGRFNVLITHYDLIMRD------RQYLKKVQWIYMIVDEGHRLKN 544 (1125)
Q Consensus 483 ~~vivy--~G~~~~R~~l~~~~---~-------~~~~~fdVvITTYe~l~kd------~~~L~ki~w~~VIIDEAHriKN 544 (1125)
..+... +|.....-...... . ....-+.+++++...+... ...+..+-..++|+||+|-+-.
T Consensus 273 ~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~ 352 (733)
T COG1203 273 FSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYAD 352 (733)
T ss_pred cccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcc
Confidence 444443 55443322111100 0 0001112222222222221 1113445566899999999865
Q ss_pred h-hhH-HHHHHHcc--ccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHH
Q 001197 545 H-ECA-LAKTISGY--QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIR 620 (1125)
Q Consensus 545 ~-~Sk-lskaL~~l--~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~ 620 (1125)
. ... +...+..+ .....+++|||+- ..|.+.+...+..+..+..
T Consensus 353 ~~~~~~l~~~i~~l~~~g~~ill~SATlP----------------------~~~~~~l~~~~~~~~~~~~---------- 400 (733)
T COG1203 353 ETMLAALLALLEALAEAGVPVLLMSATLP----------------------PFLKEKLKKALGKGREVVE---------- 400 (733)
T ss_pred cchHHHHHHHHHHHHhCCCCEEEEecCCC----------------------HHHHHHHHHHHhcccceec----------
Confidence 5 222 33333333 4678999999961 1122212111111100000
Q ss_pred HHHhhhhhhhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCccc
Q 001197 621 RLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLF 700 (1125)
Q Consensus 621 rL~~vL~pflLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~ 700 (1125)
+.+ .| ..++.|.+.
T Consensus 401 ----------------------~~~-----~~---------------------------------------~~~~e~~~~ 414 (733)
T COG1203 401 ----------------------NAK-----FC---------------------------------------PKEDEPGLK 414 (733)
T ss_pred ----------------------ccc-----cc---------------------------------------ccccccccc
Confidence 000 00 000111111
Q ss_pred ccccchhhHHHHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHc
Q 001197 701 VGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFN 780 (1125)
Q Consensus 701 ~~~~~~~~~~~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn 780 (1125)
....... ...+. ..+......-...|.+|+|-++.+..+--+...|+..+.+++.+||..+..+|.+.++...
T Consensus 415 ~~~~~~~------~~~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~ 487 (733)
T COG1203 415 RKERVDV------EDGPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELK 487 (733)
T ss_pred cccchhh------hhhhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHH
Confidence 1000000 00000 1222233333457899999999999999999999988878999999999999999988654
Q ss_pred C--CCCCceEEEeeccccccccCCCCCCEEEEeCCCCC-hhhHHHHHhhhcccC--CCCcEEEEEEEeCCCHHHHHHHHH
Q 001197 781 A--PDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWN-PQMDQQAEDRAHRIG--QKKEVRVFVLVSVGSIEEVILERA 855 (1125)
Q Consensus 781 ~--~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WN-P~~d~QAigRahRIG--Qkk~V~VyrLIt~~TIEE~Il~r~ 855 (1125)
. ..... .++++|.+...|+|+. .|.+|- +-+ ....+||.||++|-| ....+.||...-........++..
T Consensus 488 ~~~~~~~~-~IvVaTQVIEagvDid-fd~mIT---e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~ 562 (733)
T COG1203 488 KLFKQNEG-FIVVATQVIEAGVDID-FDVLIT---ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKL 562 (733)
T ss_pred HHHhccCC-eEEEEeeEEEEEeccc-cCeeee---cCCCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcc
Confidence 2 11112 3699999999999976 676663 223 456889999999999 556688888877777777777665
Q ss_pred HHHhhH
Q 001197 856 KQKMGI 861 (1125)
Q Consensus 856 ~~Kl~l 861 (1125)
..+...
T Consensus 563 ~~~~~~ 568 (733)
T COG1203 563 EKKLKS 568 (733)
T ss_pred hhhhcc
Confidence 554433
No 125
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.32 E-value=2.8e-11 Score=128.61 Aligned_cols=155 Identities=16% Similarity=0.166 Sum_probs=107.9
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHH-HHHHHHcc-CCCCCEEEEcCc-ccHHHHHHHHHhhCC--
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL-IAYLLENK-GVTGPHVIVAPK-AVLPNWINEFSTWAP-- 481 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIal-i~~L~e~~-~~~gp~LIVvP~-sll~qW~~Ef~k~~p-- 481 (1125)
.|++||.+++..+.. +.+.+++.++|+|||+..+.. +..+.... ...+.+|||||. .++.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 589999999987775 778999999999999886544 44444431 234568999998 788999999988864
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHh--hhccCeeEEEEcCCcccCChh-hH-HHHHHHccc
Q 001197 482 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE-CA-LAKTISGYQ 557 (1125)
Q Consensus 482 ~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~--L~ki~w~~VIIDEAHriKN~~-Sk-lskaL~~l~ 557 (1125)
+..+..+.|......... .+ . ...+|+|+|.+.+...... +.-..+.++|+||+|.+.+.. .. +...+..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~-~~-~--~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~ 172 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIR-KL-K--RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLP 172 (203)
T ss_pred CceEEEEECCCCHHHHHH-Hh-c--CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCC
Confidence 566777777655433221 11 1 4678999999887653211 222357899999999986543 22 233334444
Q ss_pred -cceEEEeecCCC
Q 001197 558 -IQRRLLLTGTPI 569 (1125)
Q Consensus 558 -s~~RLlLTGTPl 569 (1125)
....+++||||-
T Consensus 173 ~~~~~~~~SAT~~ 185 (203)
T cd00268 173 KDRQTLLFSATMP 185 (203)
T ss_pred cccEEEEEeccCC
Confidence 567899999985
No 126
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=1.8e-10 Score=143.60 Aligned_cols=116 Identities=18% Similarity=0.263 Sum_probs=103.9
Q ss_pred cchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccc
Q 001197 716 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 795 (1125)
Q Consensus 716 S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrA 795 (1125)
..|+..|.+.+..+...|..|||||.+....+.|..+|...|+++..|++ +..+|+..|..|..+... ++|+|..
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~---VtIATNM 655 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGA---VTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCe---EEEeccC
Confidence 45899999999998899999999999999999999999999999999997 678999999999876655 7999999
Q ss_pred cccccCCCCCC--------EEEEeCCCCChhhHHHHHhhhcccCCCCcE
Q 001197 796 GGLGLNLQTAD--------TVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 836 (1125)
Q Consensus 796 GG~GLNLq~Ad--------~VIi~D~~WNP~~d~QAigRahRIGQkk~V 836 (1125)
+|+|+++.-.+ +||.++.+-+...|.|++||++|.|..-..
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 99999998443 448889999999999999999999987554
No 127
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.26 E-value=1.4e-09 Score=135.69 Aligned_cols=120 Identities=16% Similarity=0.276 Sum_probs=97.5
Q ss_pred hcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecc
Q 001197 715 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 794 (1125)
Q Consensus 715 ~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTr 794 (1125)
...|+..+.+-+..+++.|..|||-|.+...-+.|...|...|+++..|+..-. +.-..+|.. +|... .+.|+|.
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~--AG~~g--~VTIATN 624 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAG--AGKLG--AVTVATN 624 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHh--cCCCC--cEEEeec
Confidence 357889999999999999999999999999999999999999999999988633 222344543 33322 3789999
Q ss_pred ccccccCCCCC--------CEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEE
Q 001197 795 AGGLGLNLQTA--------DTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 839 (1125)
Q Consensus 795 AGG~GLNLq~A--------d~VIi~D~~WNP~~d~QAigRahRIGQkk~V~Vy 839 (1125)
.+|+|.++.-. =+||.-..+-|...+.|..||++|.|.+-....|
T Consensus 625 mAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 625 MAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred cccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 99999886543 3788899999999999999999999988665444
No 128
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.25 E-value=5.1e-11 Score=134.59 Aligned_cols=316 Identities=18% Similarity=0.212 Sum_probs=208.3
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHH-HHHccCCCCCEEEEcCc-ccHHH---HHHHHHhhCC
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAY-LLENKGVTGPHVIVAPK-AVLPN---WINEFSTWAP 481 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~-L~e~~~~~gp~LIVvP~-sll~q---W~~Ef~k~~p 481 (1125)
++.|-|.+.+.-++. +...+-..-+|.|||..-+.-+.. |.......-..||+.|+ -|..| ...++.++..
T Consensus 43 ~ptpiqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~ 118 (529)
T KOG0337|consen 43 TPTPIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTK 118 (529)
T ss_pred CCCchhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccc
Confidence 455667776654443 333333456899999876554443 33333223378999998 44444 4455555554
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH--HhhhccCeeEEEEcCCcccCC--hhhHHHHHHHccc
Q 001197 482 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKN--HECALAKTISGYQ 557 (1125)
Q Consensus 482 ~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~--~~L~ki~w~~VIIDEAHriKN--~~SklskaL~~l~ 557 (1125)
--.++.|+|...+.+. ..-..++||||.|...+.--. -.|.--...|||+||+.+|-. ..-++.+.+.+++
T Consensus 119 lr~s~~~ggD~~eeqf-----~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~ 193 (529)
T KOG0337|consen 119 LRQSLLVGGDSIEEQF-----ILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLP 193 (529)
T ss_pred hhhhhhcccchHHHHH-----HHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCC
Confidence 3445567776544322 222257899999988764321 113334567999999999854 4567888887774
Q ss_pred -cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHH
Q 001197 558 -IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 636 (1125)
Q Consensus 558 -s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~ 636 (1125)
+.-.+++|||- .+.+ + .|... .+..|.++| -
T Consensus 194 ~~~QTllfSatl-p~~l------v------------~faka--------------------------Gl~~p~lVR---l 225 (529)
T KOG0337|consen 194 ESRQTLLFSATL-PRDL------V------------DFAKA--------------------------GLVPPVLVR---L 225 (529)
T ss_pred CcceEEEEeccC-chhh------H------------HHHHc--------------------------cCCCCceEE---e
Confidence 45678999993 1111 1 11110 011122221 1
Q ss_pred HHhhhCCCCeEEEEEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhc
Q 001197 637 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 716 (1125)
Q Consensus 637 dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S 716 (1125)
||+. ..++. .+++.+ .++..
T Consensus 226 dvet------------kise~------------------------------lk~~f~------------------~~~~a 245 (529)
T KOG0337|consen 226 DVET------------KISEL------------------------------LKVRFF------------------RVRKA 245 (529)
T ss_pred ehhh------------hcchh------------------------------hhhhee------------------eeccH
Confidence 1111 00000 000000 01233
Q ss_pred chHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecccc
Q 001197 717 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 796 (1125)
Q Consensus 717 ~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAG 796 (1125)
.|...|..++..... .++.+||+......+.+...|...|+....+.|++....|..-+.+|+..... +|++|+.+
T Consensus 246 ~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~---~lvvTdva 321 (529)
T KOG0337|consen 246 EKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTS---ILVVTDVA 321 (529)
T ss_pred HHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccc---eEEEehhh
Confidence 466666666665433 56899999999999999999999999999999999999999999999987765 79999999
Q ss_pred ccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCC
Q 001197 797 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 845 (1125)
Q Consensus 797 G~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~ 845 (1125)
..|++++-.|+||.||.|-.+..+.+|+||+.|-|.+ -..|-||+..
T Consensus 322 aRG~diplldnvinyd~p~~~klFvhRVgr~aragrt--g~aYs~V~~~ 368 (529)
T KOG0337|consen 322 ARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAYSLVAST 368 (529)
T ss_pred hccCCCccccccccccCCCCCceEEEEecchhhcccc--ceEEEEEecc
Confidence 9999999999999999999999999999999998854 4667777654
No 129
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.23 E-value=1.7e-10 Score=130.31 Aligned_cols=208 Identities=23% Similarity=0.308 Sum_probs=128.5
Q ss_pred eEEEEEecCCHHHHHHHHHHHhhcccccc----cCCC-----------ccchHHHHHHHHHHhhCCCcccccccchh---
Q 001197 646 SQVILKCDMSAWQKVYYQQVTDVGRVGLD----TGTG-----------KSKSLQNLSMQLRKCCNHPYLFVGEYNMW--- 707 (1125)
Q Consensus 646 ~e~vi~~~ms~~Q~~lY~~i~~~~~~~l~----~~~~-----------k~~~l~n~~~qLRkicnhP~L~~~~~~~~--- 707 (1125)
.++.+..+|+..|+.+|+.+.......+. .... ....+..++.+++.+|+||+|....+.+-
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 35778899999999999988765433221 1111 11345556678999999999987755332
Q ss_pred ---hHHHHHhhcchHHHHHHHhHHh-----hhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHH---
Q 001197 708 ---RKEEIIRASGKFELLDRLLPKL-----RKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLL--- 776 (1125)
Q Consensus 708 ---~~~~li~~S~Kle~L~~lL~kl-----~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I--- 776 (1125)
..+.+...|+||.+|.+++..+ ...+.++||.++...++|+||.+|...++.|-|++|..-.++....-
T Consensus 84 ~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~ 163 (297)
T PF11496_consen 84 LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNG 163 (297)
T ss_dssp STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----
T ss_pred cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccc
Confidence 2566788999999999999999 77788999999999999999999999999999999986655443322
Q ss_pred ---------HHH-cCCCCCceEEEeecccccc----ccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEE
Q 001197 777 ---------KQF-NAPDSPYFMFLLSTRAGGL----GLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLV 842 (1125)
Q Consensus 777 ---------~~F-n~~ds~~~VfLLSTrAGG~----GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLI 842 (1125)
... ..+...+.|+|+++.-... .++-...|.||-||+.+++....-..-|.+--.+ +.+-|++||
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv 242 (297)
T PF11496_consen 164 NTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLV 242 (297)
T ss_dssp ------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEE
T ss_pred ccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEe
Confidence 111 1223356677777665443 2334457999999999998876555555543333 789999999
Q ss_pred eCCCHHHHHHHH
Q 001197 843 SVGSIEEVILER 854 (1125)
Q Consensus 843 t~~TIEE~Il~r 854 (1125)
..+|+|--++..
T Consensus 243 ~~nSiEHi~L~~ 254 (297)
T PF11496_consen 243 PSNSIEHIELCF 254 (297)
T ss_dssp ETTSHHHHHHHH
T ss_pred eCCCHHHHHHHc
Confidence 999999988765
No 130
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.23 E-value=4.7e-09 Score=128.19 Aligned_cols=388 Identities=17% Similarity=0.167 Sum_probs=217.4
Q ss_pred CCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHH----HHHHHHhh
Q 001197 404 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN----WINEFSTW 479 (1125)
Q Consensus 404 ~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~q----W~~Ef~k~ 479 (1125)
.|-.+++-|+-|..-|+. |.|.-..+|-|||+++...+...... ...+-||+|+..|.. |...+-.|
T Consensus 75 lg~r~ydvQlig~l~Ll~------G~VaEM~TGEGKTLvA~l~a~l~AL~---G~~VhvvT~NdyLA~RDae~m~~ly~~ 145 (764)
T PRK12326 75 LGLRPFDVQLLGALRLLA------GDVIEMATGEGKTLAGAIAAAGYALQ---GRRVHVITVNDYLARRDAEWMGPLYEA 145 (764)
T ss_pred cCCCcchHHHHHHHHHhC------CCcccccCCCCHHHHHHHHHHHHHHc---CCCeEEEcCCHHHHHHHHHHHHHHHHh
Confidence 356788899988866652 45777889999999986555433332 346788899966643 77777777
Q ss_pred CCCceEEEEcCCh--hHHHHHHHHHHhhcCCccEEEecHHH-----HHHh----HHhhhccCeeEEEEcCCcccCChhhH
Q 001197 480 APSIAAVVYDGRP--DERKAMREEFFSERGRFNVLITHYDL-----IMRD----RQYLKKVQWIYMIVDEGHRLKNHECA 548 (1125)
Q Consensus 480 ~p~~~vivy~G~~--~~R~~l~~~~~~~~~~fdVvITTYe~-----l~kd----~~~L~ki~w~~VIIDEAHriKN~~Sk 548 (1125)
+ ++.+-+..+.. .+|+.. -..||+.+|-.. ++.. ......-.++++||||+..+-=.
T Consensus 146 L-GLsvg~i~~~~~~~err~a--------Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLID--- 213 (764)
T PRK12326 146 L-GLTVGWITEESTPEERRAA--------YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVD--- 213 (764)
T ss_pred c-CCEEEEECCCCCHHHHHHH--------HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheec---
Confidence 6 56666665543 223222 245677776433 3222 12223347889999999876322
Q ss_pred HHHHHHccccceEEEeecCCC-CCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHH----------
Q 001197 549 LAKTISGYQIQRRLLLTGTPI-QNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLL---------- 617 (1125)
Q Consensus 549 lskaL~~l~s~~RLlLTGTPl-qN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~---------- 617 (1125)
.+..-+++||.+- ++.+..++.++.-|.++.. |.. ......+.+++.....
T Consensus 214 --------eArtPLiISg~~~~~~~y~~~~~~v~~L~~~~d---------y~i-de~~k~v~LTe~G~~~~e~~l~~~~l 275 (764)
T PRK12326 214 --------EALVPLVLAGSTPGEAPRGEIAELVRRLREGKD---------YEI-DDDGRNVHLTDKGARKVEKALGGIDL 275 (764)
T ss_pred --------cccCceeeeCCCcchhHHHHHHHHHHhcCcCCc---------EEE-EcCCCeeEecHHHHHHHHHHcCCccc
Confidence 2456688888653 2333444444444433210 000 0001112222211111
Q ss_pred --------HHHHHHhhhhh-hhhhhhHHHHhhhCCCCeEEEEEecCC-------HHHHHHHHHHHhhcccccccCC--Cc
Q 001197 618 --------IIRRLHHVIRP-FILRRKKDEVEKYLPGKSQVILKCDMS-------AWQKVYYQQVTDVGRVGLDTGT--GK 679 (1125)
Q Consensus 618 --------~i~rL~~vL~p-flLRR~K~dV~~~LP~k~e~vi~~~ms-------~~Q~~lY~~i~~~~~~~l~~~~--~k 679 (1125)
.+..+...|+- +++.+ ++. ++-...+.++--++| .++.-+-+.+..+....+.... ..
T Consensus 276 y~~~~~~~~~~~i~~AL~A~~l~~~---d~d-YiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~A 351 (764)
T PRK12326 276 YSEEHVGTTLTQVNVALHAHALLQR---DVH-YIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLD 351 (764)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHhc---CCc-EEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeee
Confidence 11111111111 11111 110 000011111111111 1222233333322222111110 00
Q ss_pred cchHHH-----------------HHHHHHHhhCCCcccccccchhhHH----H-HHhhcchHHHHHHHhHHhhhCCCEEE
Q 001197 680 SKSLQN-----------------LSMQLRKCCNHPYLFVGEYNMWRKE----E-IIRASGKFELLDRLLPKLRKSGHRVL 737 (1125)
Q Consensus 680 ~~~l~n-----------------~~~qLRkicnhP~L~~~~~~~~~~~----~-li~~S~Kle~L~~lL~kl~~~g~KVL 737 (1125)
.-++++ ....++++.+-+.+..+...+.... . ......|+..+.+-+..+++.|..||
T Consensus 352 sIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVL 431 (764)
T PRK12326 352 TITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVL 431 (764)
T ss_pred hhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEE
Confidence 111111 2235666666665544433221110 1 11234688899999999999999999
Q ss_pred EEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCC------------
Q 001197 738 LFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTA------------ 805 (1125)
Q Consensus 738 IFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~A------------ 805 (1125)
|.|.+....+.|...|...|++...|+..-. +.-..+|.+= |... .+-|+|..+|+|.++.-.
T Consensus 432 Vgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A--G~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~~ 506 (764)
T PRK12326 432 VGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA--GKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRVAE 506 (764)
T ss_pred EEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc--CCCC--cEEEEecCCCCccCeecCCCcccchHHHHH
Confidence 9999999999999999999999999998644 3335555543 2222 378999999999886632
Q ss_pred ---CEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEE
Q 001197 806 ---DTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 839 (1125)
Q Consensus 806 ---d~VIi~D~~WNP~~d~QAigRahRIGQkk~V~Vy 839 (1125)
=+||....+-|-..+.|..||++|.|..-....|
T Consensus 507 ~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 507 LGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred cCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 4889899999999999999999999988765554
No 131
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.16 E-value=1.2e-09 Score=135.84 Aligned_cols=71 Identities=30% Similarity=0.400 Sum_probs=62.0
Q ss_pred CCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEE-----eCCC---C---ChhhHHHHHh
Q 001197 757 DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII-----FDSD---W---NPQMDQQAED 825 (1125)
Q Consensus 757 gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi-----~D~~---W---NP~~d~QAig 825 (1125)
.+.|...|.+++..+|...-+.|.++..+ +|+||...+.|+||+ |++||| |||. | +|....|..|
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~iq---vlvstatlawgvnlp-ahtViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGHIQ---VLVSTATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCcee---EEEeehhhhhhcCCC-cceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 35688999999999999999999988766 699999999999988 788887 6764 4 5889999999
Q ss_pred hhcccC
Q 001197 826 RAHRIG 831 (1125)
Q Consensus 826 RahRIG 831 (1125)
||+|.+
T Consensus 683 ragrp~ 688 (1674)
T KOG0951|consen 683 RAGRPQ 688 (1674)
T ss_pred hcCCCc
Confidence 999976
No 132
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.11 E-value=1.4e-08 Score=130.68 Aligned_cols=88 Identities=15% Similarity=0.277 Sum_probs=63.4
Q ss_pred HHHHhHHh-hhCCCEEEEEeccchHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecccc
Q 001197 722 LDRLLPKL-RKSGHRVLLFSQMTRLMDILEIYLKL----NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 796 (1125)
Q Consensus 722 L~~lL~kl-~~~g~KVLIFsq~t~~ldiLe~~L~~----~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAG 796 (1125)
+.+.+.++ ...+.++|||+.+..+++.+...|.. .++.+.. .| .. ..|..+++.|..++.. +|++|...
T Consensus 662 ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~-q~-~~-~~r~~ll~~F~~~~~~---iLlgt~sf 735 (850)
T TIGR01407 662 IASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLA-QG-IN-GSRAKIKKRFNNGEKA---ILLGTSSF 735 (850)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEe-cC-CC-ccHHHHHHHHHhCCCe---EEEEccee
Confidence 33334333 34567899999999999999998864 3444333 23 22 4789999999986554 68889999
Q ss_pred ccccCCCCC--CEEEEeCCCC
Q 001197 797 GLGLNLQTA--DTVIIFDSDW 815 (1125)
Q Consensus 797 G~GLNLq~A--d~VIi~D~~W 815 (1125)
.+||++++. ..|||.-.|+
T Consensus 736 ~EGVD~~g~~l~~viI~~LPf 756 (850)
T TIGR01407 736 WEGVDFPGNGLVCLVIPRLPF 756 (850)
T ss_pred ecccccCCCceEEEEEeCCCC
Confidence 999999974 5777776665
No 133
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.11 E-value=2.6e-08 Score=116.09 Aligned_cols=130 Identities=24% Similarity=0.218 Sum_probs=108.2
Q ss_pred HHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccC
Q 001197 722 LDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLN 801 (1125)
Q Consensus 722 L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLN 801 (1125)
|..-+.+..+.+.||||-+=...|.+-|.+||...|+++..+|.....-+|.++|.+...|..+ +|+-..-.-+||+
T Consensus 435 L~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D---vLVGINLLREGLD 511 (663)
T COG0556 435 LLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINLLREGLD 511 (663)
T ss_pred HHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc---EEEeehhhhccCC
Confidence 3333444456799999999999999999999999999999999999999999999999998766 5888899999999
Q ss_pred CCCCCEEEEeCCCC-----ChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 001197 802 LQTADTVIIFDSDW-----NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERA 855 (1125)
Q Consensus 802 Lq~Ad~VIi~D~~W-----NP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~r~ 855 (1125)
|+.+..|.|+|.|- +-...+|.+|||.|--..+ |..|-=...+|+.+.|-+..
T Consensus 512 iPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~Gk-vIlYAD~iT~sM~~Ai~ET~ 569 (663)
T COG0556 512 LPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK-VILYADKITDSMQKAIDETE 569 (663)
T ss_pred CcceeEEEEeecCccccccccchHHHHHHHHhhccCCe-EEEEchhhhHHHHHHHHHHH
Confidence 99999999999985 7789999999999954333 55554445567777766544
No 134
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.07 E-value=3.5e-08 Score=123.28 Aligned_cols=147 Identities=16% Similarity=0.210 Sum_probs=109.1
Q ss_pred HHHHhhCCCcccccccchhhHH-----HHHhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEe
Q 001197 689 QLRKCCNHPYLFVGEYNMWRKE-----EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRL 763 (1125)
Q Consensus 689 qLRkicnhP~L~~~~~~~~~~~-----~li~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rL 763 (1125)
.+.++.+-+.+..+...+.... -......|+.++.+-+..+.+.|..|||-+.+....+.|..+|...|+++-.|
T Consensus 400 Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VL 479 (913)
T PRK13103 400 EFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVL 479 (913)
T ss_pred HHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHh
Confidence 4566666655554433221111 11234579999999999999999999999999999999999999999999888
Q ss_pred cCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCC-------------------------------------CCC
Q 001197 764 DGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ-------------------------------------TAD 806 (1125)
Q Consensus 764 dGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq-------------------------------------~Ad 806 (1125)
+.... +.-..+|. ++|... .+-|+|..+|+|.++. +-=
T Consensus 480 NAk~~-~~EA~IIa--~AG~~G--aVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGL 554 (913)
T PRK13103 480 NAKYH-EKEAEIIA--QAGRPG--ALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGL 554 (913)
T ss_pred ccccc-hhHHHHHH--cCCCCC--cEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCC
Confidence 77533 33344455 344333 3789999999998874 234
Q ss_pred EEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEE
Q 001197 807 TVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFV 840 (1125)
Q Consensus 807 ~VIi~D~~WNP~~d~QAigRahRIGQkk~V~Vyr 840 (1125)
+||.-..+-|-..+.|..||++|.|..-....|-
T Consensus 555 hVIgTerheSrRID~QLrGRaGRQGDPGsS~f~l 588 (913)
T PRK13103 555 HVIASERHESRRIDNQLRGRAGRQGDPGSSRFYL 588 (913)
T ss_pred EEEeeccCchHHHHHHhccccccCCCCCceEEEE
Confidence 8899999999999999999999999886655543
No 135
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.04 E-value=5.7e-08 Score=120.24 Aligned_cols=323 Identities=19% Similarity=0.284 Sum_probs=179.3
Q ss_pred CCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCC-
Q 001197 404 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP- 481 (1125)
Q Consensus 404 ~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p- 481 (1125)
.|..|...|.- |......+.--.|+| ++|+|||.-.+....++... .+..+||+|+ .|+.|-.+-+.++.+
T Consensus 79 ~G~~~ws~QR~---WakR~~rg~SFaiiA-PTGvGKTTfg~~~sl~~a~k---gkr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 79 TGFRPWSAQRV---WAKRLVRGKSFAIIA-PTGVGKTTFGLLMSLYLAKK---GKRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred hCCCchHHHHH---HHHHHHcCCceEEEc-CCCCchhHHHHHHHHHHHhc---CCeEEEEecCHHHHHHHHHHHHHHHhh
Confidence 45688888875 555555555555665 79999997665555555443 2578999999 557788888888873
Q ss_pred ----CceEEEEcCC--hhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHc
Q 001197 482 ----SIAAVVYDGR--PDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG 555 (1125)
Q Consensus 482 ----~~~vivy~G~--~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~ 555 (1125)
...++ ||+. ..+++.....+.+ ++|||+|||-..+.+..+.|.+.+|++|++|.+.-+-... +.
T Consensus 152 ~~~~~~~~~-yh~~l~~~ekee~le~i~~--gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~Lkas-kN------ 221 (1187)
T COG1110 152 AGSLDVLVV-YHSALPTKEKEEALERIES--GDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKAS-KN------ 221 (1187)
T ss_pred cCCcceeee-eccccchHHHHHHHHHHhc--CCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhcc-cc------
Confidence 33444 8887 4455556666655 8999999999999999999999999999999987652111 11
Q ss_pred cccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhH
Q 001197 556 YQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 635 (1125)
Q Consensus 556 l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K 635 (1125)
..+.|.|.|=| +..+..-|.+..+- .+.. ......++.+.++-.-.++.+
T Consensus 222 --vDriL~LlGf~-eE~i~~a~~~~~lr-----------~~~~----------------~~~~~~~~~e~~~~~e~~~~~ 271 (1187)
T COG1110 222 --VDRLLRLLGFS-EEVIESAYELIKLR-----------RKLY----------------GEKRAERVREELREVEREREK 271 (1187)
T ss_pred --HHHHHHHcCCC-HHHHHHHHHHHHHH-----------HHhh----------------hhhhHHHHHHHHHHHHHHHHH
Confidence 11122222322 00001111111110 0000 000011111111111000000
Q ss_pred HHHhhhCCCCeEEEEEecCC--HHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHH
Q 001197 636 DEVEKYLPGKSQVILKCDMS--AWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 713 (1125)
Q Consensus 636 ~dV~~~LP~k~e~vi~~~ms--~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li 713 (1125)
. ..-+..-.+-...-. ..-..+|..+.... .+.+ .. -||.+.+ ..
T Consensus 272 ~----r~k~g~LvvsSATg~~rg~R~~LfReLlgFe-----vG~~-~~-------~LRNIvD----------------~y 318 (1187)
T COG1110 272 K----RRKLGILVVSSATGKPRGSRLKLFRELLGFE-----VGSG-GE-------GLRNIVD----------------IY 318 (1187)
T ss_pred h----ccCCceEEEeeccCCCCCchHHHHHHHhCCc-----cCcc-ch-------hhhheee----------------ee
Confidence 0 000000000000000 01112233322111 1100 00 1222111 01
Q ss_pred hhcchHHHHHHHhHHhhhCCCEEEEEecc---chHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEE
Q 001197 714 RASGKFELLDRLLPKLRKSGHRVLLFSQM---TRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 790 (1125)
Q Consensus 714 ~~S~Kle~L~~lL~kl~~~g~KVLIFsq~---t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfL 790 (1125)
..++-.+.+.++++++ |.=.|||.+- ....+.|..+|...|+++..++.. ..+.++.|..|+.++-|=+
T Consensus 319 ~~~~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGv 390 (1187)
T COG1110 319 VESESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGV 390 (1187)
T ss_pred ccCccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEe
Confidence 1123445566666665 5668999998 789999999999999999888752 3678999999887643322
Q ss_pred ee-ccccccccCCCC-CCEEEEeCCC
Q 001197 791 LS-TRAGGLGLNLQT-ADTVIIFDSD 814 (1125)
Q Consensus 791 LS-TrAGG~GLNLq~-Ad~VIi~D~~ 814 (1125)
.| ....=.||+|+. +.++|++..|
T Consensus 391 AsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 391 ASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cccccceeecCCchhheeEEEEecCC
Confidence 22 334557999986 8999999988
No 136
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex
Probab=98.98 E-value=1.4e-10 Score=104.55 Aligned_cols=60 Identities=40% Similarity=0.668 Sum_probs=43.6
Q ss_pred hhcccccccCccccccccCCChhhhhhhcccccCCCCcCCCccccccccccCCCCCHHHHH
Q 001197 931 NYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWM 991 (1125)
Q Consensus 931 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~~~~~~~~~~~~~~~ 991 (1125)
.+++|||+++|||+||..+......+.. ..........++|+|+||.|+|+|+|||+|||
T Consensus 15 ~~p~RLm~e~ELPe~~~~d~~~~~~~~~-~e~~~~~~~~grG~R~RK~V~Y~D~LTEeQwL 74 (74)
T PF14619_consen 15 PYPSRLMEESELPEWYREDIEEELEKEE-EEEEAETNEYGRGKRERKEVSYDDGLTEEQWL 74 (74)
T ss_pred CCCccccchhhchHHHHhcchhhhhhhh-hhhccchhhcccccccccccccCCCCCHHHhC
Confidence 4667999999999999988763311111 01101112468999999999999999999997
No 137
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.97 E-value=5.7e-08 Score=118.90 Aligned_cols=361 Identities=18% Similarity=0.175 Sum_probs=203.1
Q ss_pred CCccCCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHH-HHHHHh
Q 001197 400 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW-INEFST 478 (1125)
Q Consensus 400 P~~l~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW-~~Ef~k 478 (1125)
|....+..|-.+|.+++..|.. +-..++|.-+..|||+.|=+.|+-.-.+ ..+++--.|.-.+.|. -++|+.
T Consensus 290 ~a~~~pFelD~FQk~Ai~~ler----g~SVFVAAHTSAGKTvVAEYAialaq~h---~TR~iYTSPIKALSNQKfRDFk~ 362 (1248)
T KOG0947|consen 290 MALIYPFELDTFQKEAIYHLER----GDSVFVAAHTSAGKTVVAEYAIALAQKH---MTRTIYTSPIKALSNQKFRDFKE 362 (1248)
T ss_pred HHhhCCCCccHHHHHHHHHHHc----CCeEEEEecCCCCcchHHHHHHHHHHhh---ccceEecchhhhhccchHHHHHH
Confidence 3334456899999999966654 7788999999999999985555432222 2356778898666664 477877
Q ss_pred hCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHh----HHhhhccCeeEEEEcCCcccCChhh-HHH-HH
Q 001197 479 WAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD----RQYLKKVQWIYMIVDEGHRLKNHEC-ALA-KT 552 (1125)
Q Consensus 479 ~~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd----~~~L~ki~w~~VIIDEAHriKN~~S-kls-ka 552 (1125)
-|.++. +..|...-. ....++|+|-+.++.- ...++. ...||+||+|.+-+... -.+ ..
T Consensus 363 tF~Dvg--LlTGDvqin-----------PeAsCLIMTTEILRsMLYrgadliRD--vE~VIFDEVHYiND~eRGvVWEEV 427 (1248)
T KOG0947|consen 363 TFGDVG--LLTGDVQIN-----------PEASCLIMTTEILRSMLYRGADLIRD--VEFVIFDEVHYINDVERGVVWEEV 427 (1248)
T ss_pred hccccc--eeecceeeC-----------CCcceEeehHHHHHHHHhcccchhhc--cceEEEeeeeecccccccccceee
Confidence 776665 556654322 5677999999988753 233444 44699999999976332 223 33
Q ss_pred HHccc-cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhh
Q 001197 553 ISGYQ-IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 631 (1125)
Q Consensus 553 L~~l~-s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i~rL~~vL~pflL 631 (1125)
+-.++ --..++||||- ++..+|..|++.--...-.+-.|.
T Consensus 428 iIMlP~HV~~IlLSATV--------------------PN~~EFA~WIGRtK~K~IyViST~------------------- 468 (1248)
T KOG0947|consen 428 IIMLPRHVNFILLSATV--------------------PNTLEFADWIGRTKQKTIYVISTS------------------- 468 (1248)
T ss_pred eeeccccceEEEEeccC--------------------CChHHHHHHhhhccCceEEEEecC-------------------
Confidence 34443 33568999993 455678888875322211111110
Q ss_pred hhhHHHHhhhCCCCeEEEEEec--C----CHHHHHHHHHHHhhccc------ccc----cCCCccchHHHHHHHHHHhhC
Q 001197 632 RRKKDEVEKYLPGKSQVILKCD--M----SAWQKVYYQQVTDVGRV------GLD----TGTGKSKSLQNLSMQLRKCCN 695 (1125)
Q Consensus 632 RR~K~dV~~~LP~k~e~vi~~~--m----s~~Q~~lY~~i~~~~~~------~l~----~~~~k~~~l~n~~~qLRkicn 695 (1125)
.-|-.-++.+++. + +.-...++..+...... ... .+.+...... .-..
T Consensus 469 ---------kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~-------~ggk 532 (1248)
T KOG0947|consen 469 ---------KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQK-------RGGK 532 (1248)
T ss_pred ---------CCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccc-------cCCc
Confidence 1233445555555 1 11111222211110000 000 0000000000 0000
Q ss_pred CCcccccccchhhHHHHHhhcchHHHHHHHhHHhhh-CCCEEEEEeccchHHHHHHHHHHhCCCe---------------
Q 001197 696 HPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRK-SGHRVLLFSQMTRLMDILEIYLKLNDFK--------------- 759 (1125)
Q Consensus 696 hP~L~~~~~~~~~~~~li~~S~Kle~L~~lL~kl~~-~g~KVLIFsq~t~~ldiLe~~L~~~gi~--------------- 759 (1125)
.++-..+... ...-..-+|-.....++..++. .--.+||||-+..-+|.-.++|...++.
T Consensus 533 ~~~~~g~~r~----~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~ 608 (1248)
T KOG0947|consen 533 TNYHNGGSRG----SGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKA 608 (1248)
T ss_pred CCCCCCCccc----ccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 0000000000 0000001111223444444443 2347899998888887777777643221
Q ss_pred ------------------------EEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCC--
Q 001197 760 ------------------------FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDS-- 813 (1125)
Q Consensus 760 ------------------------~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~-- 813 (1125)
+...||+.=+--++-+---|+.+=-. +|.+|...+.|+|++ |.+|||-..
T Consensus 609 ~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVK---VLFATETFAMGVNMP-ARtvVF~Sl~K 684 (1248)
T KOG0947|consen 609 VARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVK---VLFATETFAMGVNMP-ARTVVFSSLRK 684 (1248)
T ss_pred HHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceE---EEeehhhhhhhcCCC-ceeEEeeehhh
Confidence 45566666555555555567765433 699999999999988 555555332
Q ss_pred -------CCChhhHHHHHhhhcccCCCCcEEEEEEEeCC
Q 001197 814 -------DWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 845 (1125)
Q Consensus 814 -------~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~ 845 (1125)
.-+|..|.|--|||+|-|=-..-+|.-++...
T Consensus 685 hDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 685 HDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred ccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 45899999999999999987776666665544
No 138
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.94 E-value=6.2e-08 Score=125.12 Aligned_cols=143 Identities=22% Similarity=0.274 Sum_probs=97.8
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcC-cccHHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHH
Q 001197 425 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-KAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFF 503 (1125)
Q Consensus 425 ~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP-~sll~qW~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~ 503 (1125)
.+.+|++.+-+|+|||++++-++..+.+... ...++|||- ..|-.|-..+|..+........ .......+...+.
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~-~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l~ 347 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPK-NPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELLE 347 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccC-CCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHHh
Confidence 4567999999999999999888877777633 334555554 4888899999999886544433 2233334444443
Q ss_pred hhcCCccEEEecHHHHHHhHH----hhhccCeeEEEEcCCcccCChhhHHHHHH-HccccceEEEeecCCCCCChHH
Q 001197 504 SERGRFNVLITHYDLIMRDRQ----YLKKVQWIYMIVDEGHRLKNHECALAKTI-SGYQIQRRLLLTGTPIQNSLQE 575 (1125)
Q Consensus 504 ~~~~~fdVvITTYe~l~kd~~----~L~ki~w~~VIIDEAHriKN~~SklskaL-~~l~s~~RLlLTGTPlqN~l~E 575 (1125)
. +.-.|||||-+.|..... .....+..+||+|||||-- ...+.+.+ ..|+...-++.||||+...-..
T Consensus 348 ~--~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ--~G~~~~~~~~~~~~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 348 D--GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ--YGELAKLLKKALKKAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred c--CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc--ccHHHHHHHHHhccceEEEeeCCcccccccc
Confidence 2 344799999988865442 2344577799999999953 23444454 4456678899999998765443
No 139
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.92 E-value=3.1e-08 Score=125.33 Aligned_cols=159 Identities=17% Similarity=0.200 Sum_probs=109.8
Q ss_pred ccCCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhC
Q 001197 402 LLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA 480 (1125)
Q Consensus 402 ~l~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~ 480 (1125)
.-.+..|-|+|.+++.-+- .+.+.++|..+|.|||+.+-.++..-...+ ..++-..|. ++..|=..+|..-+
T Consensus 114 ~~~~F~LD~fQ~~a~~~Le----r~esVlV~ApTssGKTvVaeyAi~~al~~~---qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 114 REYPFELDPFQQEAIAILE----RGESVLVCAPTSSGKTVVAEYAIALALRDG---QRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred HhCCCCcCHHHHHHHHHHh----CCCcEEEEccCCCCcchHHHHHHHHHHHcC---CceEeccchhhhhhhHHHHHHHHh
Confidence 3356799999999996444 488899999999999999988887666543 247888898 55555556666555
Q ss_pred CCc--eEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH----HhhhccCeeEEEEcCCcccCChh--hHHHHH
Q 001197 481 PSI--AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR----QYLKKVQWIYMIVDEGHRLKNHE--CALAKT 552 (1125)
Q Consensus 481 p~~--~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~----~~L~ki~w~~VIIDEAHriKN~~--Sklska 552 (1125)
..+ .+-++.|+.. ..++..|+|.|-|++++-. ..+. ....||+||.|.|.... .-.-..
T Consensus 187 gdv~~~vGL~TGDv~-----------IN~~A~clvMTTEILRnMlyrg~~~~~--~i~~ViFDEvHyi~D~eRG~VWEE~ 253 (1041)
T COG4581 187 GDVADMVGLMTGDVS-----------INPDAPCLVMTTEILRNMLYRGSESLR--DIEWVVFDEVHYIGDRERGVVWEEV 253 (1041)
T ss_pred hhhhhhccceeccee-----------eCCCCceEEeeHHHHHHHhccCccccc--ccceEEEEeeeeccccccchhHHHH
Confidence 422 2344555432 1156678887778886532 2233 45579999999997643 334444
Q ss_pred HHccccc-eEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcc
Q 001197 553 ISGYQIQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNA 600 (1125)
Q Consensus 553 L~~l~s~-~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~ 600 (1125)
+..++.. +.++|||| .++...|..|+..
T Consensus 254 Ii~lP~~v~~v~LSAT--------------------v~N~~EF~~Wi~~ 282 (1041)
T COG4581 254 IILLPDHVRFVFLSAT--------------------VPNAEEFAEWIQR 282 (1041)
T ss_pred HHhcCCCCcEEEEeCC--------------------CCCHHHHHHHHHh
Confidence 5555544 88999999 3667789999875
No 140
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.87 E-value=4.7e-07 Score=112.44 Aligned_cols=146 Identities=17% Similarity=0.201 Sum_probs=109.9
Q ss_pred HHHHhhCCCcccccccchhhHH----HH-HhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEe
Q 001197 689 QLRKCCNHPYLFVGEYNMWRKE----EI-IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRL 763 (1125)
Q Consensus 689 qLRkicnhP~L~~~~~~~~~~~----~l-i~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rL 763 (1125)
.+.++.+.+.+..+...+.... .+ .....|+..+.+-+..+.+.|..|||.|.+....+.|..+|...|+++..|
T Consensus 377 Ef~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vL 456 (925)
T PRK12903 377 EFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVL 456 (925)
T ss_pred HHHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceee
Confidence 4566666666555433221110 11 123578889999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCC--------EEEEeCCCCChhhHHHHHhhhcccCCCCc
Q 001197 764 DGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTAD--------TVIIFDSDWNPQMDQQAEDRAHRIGQKKE 835 (1125)
Q Consensus 764 dGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad--------~VIi~D~~WNP~~d~QAigRahRIGQkk~ 835 (1125)
+.... +++..|-. ++|... .+.|+|..+|+|.++.-.. +||....+-|-..+.|..||++|.|..-.
T Consensus 457 NAk~~--e~EA~IIa-~AG~~G--aVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGs 531 (925)
T PRK12903 457 NAKQN--AREAEIIA-KAGQKG--AITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGE 531 (925)
T ss_pred cccch--hhHHHHHH-hCCCCC--eEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCc
Confidence 88533 44443332 444433 4789999999999987544 89999999999999999999999998866
Q ss_pred EEEE
Q 001197 836 VRVF 839 (1125)
Q Consensus 836 V~Vy 839 (1125)
.+.|
T Consensus 532 s~f~ 535 (925)
T PRK12903 532 SRFF 535 (925)
T ss_pred ceEE
Confidence 5544
No 141
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.77 E-value=6.6e-08 Score=115.79 Aligned_cols=153 Identities=20% Similarity=0.283 Sum_probs=100.4
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHH-HHHHHHhhCCCce
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN-WINEFSTWAPSIA 484 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~q-W~~Ef~k~~p~~~ 484 (1125)
.+|-|+|..++ ....++...++..-+..|||+.|=..|+.-+..+ .+++.-.|--.|+| =.+||..-|.++-
T Consensus 128 F~LDpFQ~~aI----~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k---QRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 128 FTLDPFQSTAI----KCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK---QRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred cccCchHhhhh----hhhcCCceEEEEeecCCCcchHHHHHHHHHHHhc---CeEEeeChhhhhcchhHHHHHHHhcccc
Confidence 58999999998 4555677788878899999999865555443332 36777788755555 4566665554332
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHh----HHhhhccCeeEEEEcCCcccCChhhH--HHHHHHcc-c
Q 001197 485 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD----RQYLKKVQWIYMIVDEGHRLKNHECA--LAKTISGY-Q 557 (1125)
Q Consensus 485 vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd----~~~L~ki~w~~VIIDEAHriKN~~Sk--lskaL~~l-~ 557 (1125)
.-.|.-. -.....++|+|-+.++.- -..++.+.| ||+||.|.|+..... +-..+--+ .
T Consensus 201 --LMTGDVT-----------InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVWEETIIllP~ 265 (1041)
T KOG0948|consen 201 --LMTGDVT-----------INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVWEETIILLPD 265 (1041)
T ss_pred --eeeccee-----------eCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccceeeeeeEEeccc
Confidence 2233211 014566899999988653 355666677 999999999874422 22333333 3
Q ss_pred cceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhcc
Q 001197 558 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNA 600 (1125)
Q Consensus 558 s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~ 600 (1125)
.-+-++||||- ++...|.+|++.
T Consensus 266 ~vr~VFLSATi--------------------PNA~qFAeWI~~ 288 (1041)
T KOG0948|consen 266 NVRFVFLSATI--------------------PNARQFAEWICH 288 (1041)
T ss_pred cceEEEEeccC--------------------CCHHHHHHHHHH
Confidence 44668999993 456689999875
No 142
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.75 E-value=1.9e-06 Score=107.16 Aligned_cols=152 Identities=22% Similarity=0.217 Sum_probs=107.5
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCCce
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 484 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~~~ 484 (1125)
..|-+-|..++.-+.+........+|...+|+|||-.-+.+|...+..+ +-+||+||- ++..|-...|...|+ .+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg-~~ 272 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFG-AK 272 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---CEEEEEeccccchHHHHHHHHHHhC-CC
Confidence 3688899999998887652233458899999999999999998887764 468999998 999999999998886 66
Q ss_pred EEEEcCChh--HHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCccc--CChhh-----H-HHHHHH
Q 001197 485 AVVYDGRPD--ERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRL--KNHEC-----A-LAKTIS 554 (1125)
Q Consensus 485 vivy~G~~~--~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHri--KN~~S-----k-lskaL~ 554 (1125)
+.++|..-. +|....... ..+...|||-|...+.--.. +-.+|||||=|.- |-.+. . ++....
T Consensus 273 v~vlHS~Ls~~er~~~W~~~--~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra 345 (730)
T COG1198 273 VAVLHSGLSPGERYRVWRRA--RRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRA 345 (730)
T ss_pred hhhhcccCChHHHHHHHHHH--hcCCceEEEEechhhcCchh-----hccEEEEeccccccccCCcCCCcCHHHHHHHHH
Confidence 666665433 333332222 23888999999887643222 4569999999984 43332 1 222223
Q ss_pred ccccceEEEeecCC
Q 001197 555 GYQIQRRLLLTGTP 568 (1125)
Q Consensus 555 ~l~s~~RLlLTGTP 568 (1125)
.......++-|+||
T Consensus 346 ~~~~~pvvLgSATP 359 (730)
T COG1198 346 KKENAPVVLGSATP 359 (730)
T ss_pred HHhCCCEEEecCCC
Confidence 33556778889999
No 143
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.75 E-value=1.5e-06 Score=110.11 Aligned_cols=77 Identities=17% Similarity=0.137 Sum_probs=60.7
Q ss_pred ccCCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHh
Q 001197 402 LLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFST 478 (1125)
Q Consensus 402 ~l~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k 478 (1125)
.++-..+||.|.+-..-+......+.++++-.++|+|||+.+|+.........+...++++.+.+ +-+.|-..|+++
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 34434569999999999999999999999999999999999987665444433333466777777 678899999988
No 144
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.74 E-value=1.7e-07 Score=104.79 Aligned_cols=236 Identities=17% Similarity=0.193 Sum_probs=141.8
Q ss_pred cCCCCccHHHHHHHHHHHHhhcc------CCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHH
Q 001197 403 LQGGELRAYQLEGLQWMLSLFNN------NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 476 (1125)
Q Consensus 403 l~g~~LrpYQ~egv~wml~l~~~------~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef 476 (1125)
+..+.|-+-|+++|-+....+.. +.|-+|+|.+|.||..|..++|.+.+..+ ..+++.|-+...|...-.+.+
T Consensus 33 ~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-r~r~vwvS~s~dL~~Da~RDl 111 (303)
T PF13872_consen 33 IDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-RKRAVWVSVSNDLKYDAERDL 111 (303)
T ss_pred HhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-CCceEEEECChhhhhHHHHHH
Confidence 44689999999999999877653 44558999999999999999998877654 334555666667777766666
Q ss_pred HhhCCC-ceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH-------Hhhhcc-Ce------eEEEEcCCcc
Q 001197 477 STWAPS-IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR-------QYLKKV-QW------IYMIVDEGHR 541 (1125)
Q Consensus 477 ~k~~p~-~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~-------~~L~ki-~w------~~VIIDEAHr 541 (1125)
....-. +.+.....-+.. .. ..-+..|+.+||.+++... ..|..+ .| .+||+||||.
T Consensus 112 ~DIG~~~i~v~~l~~~~~~------~~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ 183 (303)
T PF13872_consen 112 RDIGADNIPVHPLNKFKYG------DI--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHK 183 (303)
T ss_pred HHhCCCcccceechhhccC------cC--CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchh
Confidence 655322 222211111000 00 0135679999999998763 122221 22 3899999999
Q ss_pred cCChhh------HHHHHH----HccccceEEEeecCCCCCChHHHHHHhh--ccC-CCCCCChHHHHHHhcccccccCcc
Q 001197 542 LKNHEC------ALAKTI----SGYQIQRRLLLTGTPIQNSLQELWSLLN--FLL-PTIFNSVENFEEWFNAPFKDRGQV 608 (1125)
Q Consensus 542 iKN~~S------klskaL----~~l~s~~RLlLTGTPlqN~l~EL~sLL~--fL~-P~~f~s~~~F~~~f~~p~~~~~~~ 608 (1125)
+||..+ +...++ ..++..+.+..|||.... +..|--+.+ +-. -.+|.+...|.+.+... + +
T Consensus 184 akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~NmaYm~RLGLWG~gtpf~~~~~f~~a~~~g----G-v 257 (303)
T PF13872_consen 184 AKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMAYMSRLGLWGPGTPFPDFDDFLEAMEKG----G-V 257 (303)
T ss_pred cCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-CceeeeeeeccccCCCCCCCCHHHHHHHHHhc----C-c
Confidence 999654 455554 345667899999998743 122211111 111 12466777776554431 1 0
Q ss_pred cCChHHHHHHHHHHHhhhhhhhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHH
Q 001197 609 ALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQ 664 (1125)
Q Consensus 609 ~~~~ee~~~~i~rL~~vL~pflLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~ 664 (1125)
..+.++..=-+ .+..+++|..+ +-.....++.+++++.|..+|+.
T Consensus 258 -----~amE~vA~dlK-a~G~yiaR~LS-----f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 258 -----GAMEMVAMDLK-ARGMYIARQLS-----FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred -----hHHHHHHHHHH-hcchheeeecc-----cCCceEEEEEecCCHHHHHHhcC
Confidence 01111111111 12334444332 44566778899999999999974
No 145
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.68 E-value=2.8e-07 Score=98.83 Aligned_cols=127 Identities=17% Similarity=0.209 Sum_probs=80.7
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCC--CEEEEcCc-ccHHHHHHHHH---hhC
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTG--PHVIVAPK-AVLPNWINEFS---TWA 480 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~g--p~LIVvP~-sll~qW~~Ef~---k~~ 480 (1125)
.+.+.|.+++-..+- +...+.-.-.|+|||...+ ++.|-.-.+..| .+||+|-+ -+..|..+|+. ++.
T Consensus 64 hpsevqhecipqail----gmdvlcqaksgmgktavfv--l~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskym 137 (387)
T KOG0329|consen 64 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFV--LATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYM 137 (387)
T ss_pred CchHhhhhhhhHHhh----cchhheecccCCCceeeee--hhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhC
Confidence 456677777765553 4445556778999995532 223333333444 56888877 66677777755 567
Q ss_pred CCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH--HhhhccCeeEEEEcCCcccC
Q 001197 481 PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLK 543 (1125)
Q Consensus 481 p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~--~~L~ki~w~~VIIDEAHriK 543 (1125)
|++++.+|.|.-.-.+.. .... ..++|++.|+..+..-. ..|.--+..+.|+|||..+.
T Consensus 138 P~vkvaVFfGG~~Ikkde--e~lk--~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 138 PSVKVSVFFGGLFIKKDE--ELLK--NCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKML 198 (387)
T ss_pred CCceEEEEEcceeccccH--HHHh--CCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHH
Confidence 999999988864332211 1122 36889999999875432 23444456789999998653
No 146
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.60 E-value=6.4e-07 Score=113.18 Aligned_cols=75 Identities=11% Similarity=0.043 Sum_probs=49.3
Q ss_pred CccEEEecHHHHHHhH--HhhhccCeeEEEEcCCcccCChhhHHHHHHHcc----ccceEEEeecCCCCC--ChHHHHHH
Q 001197 508 RFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKNHECALAKTISGY----QIQRRLLLTGTPIQN--SLQELWSL 579 (1125)
Q Consensus 508 ~fdVvITTYe~l~kd~--~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l----~s~~RLlLTGTPlqN--~l~EL~sL 579 (1125)
.-.|+++|...+..|. ..+.--.+..|||||||++.... .-+-.+..| +..+..++|+.|-.. ....+-.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~-~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~v 85 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESS-QEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETK 85 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccc-cHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHH
Confidence 3458999999988875 22333467899999999996432 222233333 456789999999763 34455555
Q ss_pred hhcc
Q 001197 580 LNFL 583 (1125)
Q Consensus 580 L~fL 583 (1125)
++-|
T Consensus 86 mk~L 89 (814)
T TIGR00596 86 MRNL 89 (814)
T ss_pred HHHh
Confidence 5544
No 147
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.58 E-value=8.2e-06 Score=106.08 Aligned_cols=91 Identities=20% Similarity=0.280 Sum_probs=63.5
Q ss_pred HHHHHhHHhh-hCCCEEEEEeccchHHHHHHHHHHhCCC--eEEEe-cCCCCHHHHHHHHHHHcCCCCCceEEEeecccc
Q 001197 721 LLDRLLPKLR-KSGHRVLLFSQMTRLMDILEIYLKLNDF--KFLRL-DGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 796 (1125)
Q Consensus 721 ~L~~lL~kl~-~~g~KVLIFsq~t~~ldiLe~~L~~~gi--~~~rL-dGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAG 796 (1125)
.+.+.|..+. ..+.++|||+.+-.+|..+.+.|..... .+..+ .| ++...|..+++.|+.++.. +|+.+.+.
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg-~~~~~r~~l~~~F~~~~~~---iLlG~~sF 814 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQG-VSSGSRARLTKQFQQFDKA---ILLGTSSF 814 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecC-CCCCCHHHHHHHHHhcCCe---EEEecCcc
Confidence 4444444443 4566888888888999988888864321 12222 33 2224578999999975544 57788999
Q ss_pred ccccCCCC--CCEEEEeCCCC
Q 001197 797 GLGLNLQT--ADTVIIFDSDW 815 (1125)
Q Consensus 797 G~GLNLq~--Ad~VIi~D~~W 815 (1125)
.+|+|+++ +..|||.-.|+
T Consensus 815 wEGVD~pg~~l~~viI~kLPF 835 (928)
T PRK08074 815 WEGIDIPGDELSCLVIVRLPF 835 (928)
T ss_pred cCccccCCCceEEEEEecCCC
Confidence 99999997 48899988777
No 148
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.57 E-value=1.2e-05 Score=100.69 Aligned_cols=110 Identities=14% Similarity=0.207 Sum_probs=77.5
Q ss_pred HHHHhhCCCcccccccchhhHHH----H-HhhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEe
Q 001197 689 QLRKCCNHPYLFVGEYNMWRKEE----I-IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRL 763 (1125)
Q Consensus 689 qLRkicnhP~L~~~~~~~~~~~~----l-i~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rL 763 (1125)
.+.++.+-+.+..+...+....+ + .....|+.++.+-+....+.|..|||-|.+...-+.|...|...|+++..+
T Consensus 375 Ef~~iY~l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vL 454 (870)
T CHL00122 375 EFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLL 454 (870)
T ss_pred HHHHHhCCCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCcccee
Confidence 45666665555544332221111 1 123458888888888889999999999999999999999999999999999
Q ss_pred cCCC-CHHHHHHHHHHHcCCCCCceEEEeeccccccccCC
Q 001197 764 DGST-KTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNL 802 (1125)
Q Consensus 764 dGst-s~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNL 802 (1125)
+... ..+.-..+|.+ +|... .+-|+|..+|+|.++
T Consensus 455 NAk~~~~~~EA~IIA~--AG~~G--~VTIATNMAGRGTDI 490 (870)
T CHL00122 455 NAKPENVRRESEIVAQ--AGRKG--SITIATNMAGRGTDI 490 (870)
T ss_pred eCCCccchhHHHHHHh--cCCCC--cEEEeccccCCCcCe
Confidence 9864 23444556664 33332 378999999999663
No 149
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.57 E-value=1.6e-05 Score=98.26 Aligned_cols=78 Identities=21% Similarity=0.254 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhC-----CCceE
Q 001197 412 QLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA-----PSIAA 485 (1125)
Q Consensus 412 Q~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~-----p~~~v 485 (1125)
|.+-+.++...+.++...|+-..+|+|||+..+..+...... ...+++||++|+ .+..|+..++..+. ..+++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~-~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE-RPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh-ccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 777788888888888777888899999999887665433331 124689999999 77888888776554 23555
Q ss_pred EEEcC
Q 001197 486 VVYDG 490 (1125)
Q Consensus 486 ivy~G 490 (1125)
.+..|
T Consensus 81 ~~lkG 85 (636)
T TIGR03117 81 GFFPG 85 (636)
T ss_pred EEEEC
Confidence 55444
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.55 E-value=1.4e-05 Score=101.03 Aligned_cols=120 Identities=16% Similarity=0.270 Sum_probs=97.4
Q ss_pred hcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecc
Q 001197 715 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 794 (1125)
Q Consensus 715 ~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTr 794 (1125)
...|+.++.+-+..+.+.|..|||-|.++..-++|...|...|+++-.|+.... +.-..+|.+= |... .+-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~A--G~~G--aVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEA--GQPG--TVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhc--CCCC--cEEEecc
Confidence 357899999999999999999999999999999999999999999988877533 2223444432 2222 3789999
Q ss_pred ccccccCCC--------CCCEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEE
Q 001197 795 AGGLGLNLQ--------TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 839 (1125)
Q Consensus 795 AGG~GLNLq--------~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~V~Vy 839 (1125)
.+|+|.++. +-=+||.-..+-|...+.|..||++|.|..-....|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 999998876 346889899999999999999999999987664444
No 151
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.52 E-value=9.7e-06 Score=101.92 Aligned_cols=104 Identities=21% Similarity=0.218 Sum_probs=79.0
Q ss_pred hhCCCEEEEEeccchHHHHHHHHHHhCCCe-EEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCC--CC
Q 001197 730 RKSGHRVLLFSQMTRLMDILEIYLKLNDFK-FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT--AD 806 (1125)
Q Consensus 730 ~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~-~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~--Ad 806 (1125)
...+.++|||+.+-.+|..+.++|...... .+...|..+ +..+++.|...... .|++.+....+|+|+.+ +.
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCee
Confidence 345669999999999999999999876653 455566555 34899999987663 58999999999999997 58
Q ss_pred EEEEeCCCCC-hh-----------------------------hHHHHHhhhcccCCCCcEEE
Q 001197 807 TVIIFDSDWN-PQ-----------------------------MDQQAEDRAHRIGQKKEVRV 838 (1125)
Q Consensus 807 ~VIi~D~~WN-P~-----------------------------~d~QAigRahRIGQkk~V~V 838 (1125)
.|||.-.|+= |. ...|++||+.|--+-+-|.|
T Consensus 551 ~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 551 LVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 8999888774 32 34599999999544444444
No 152
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.51 E-value=2.4e-05 Score=100.27 Aligned_cols=89 Identities=11% Similarity=0.110 Sum_probs=64.3
Q ss_pred HHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecccccccc
Q 001197 721 LLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL 800 (1125)
Q Consensus 721 ~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GL 800 (1125)
.+.+.+..+...+.++||++.+-.+|..+.+.|....+.. ...|... .+..++++|+.++.. +|+.|.+..+|+
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCC
Confidence 4455555555677889999999999998888887655444 5556433 256799999985554 688889999999
Q ss_pred CCC--CCCEEEEeCCCC
Q 001197 801 NLQ--TADTVIIFDSDW 815 (1125)
Q Consensus 801 NLq--~Ad~VIi~D~~W 815 (1125)
+++ .+..|||.-.|+
T Consensus 709 D~p~~~~~~viI~kLPF 725 (820)
T PRK07246 709 DFVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCCeEEEEEecCCC
Confidence 996 356677766553
No 153
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.44 E-value=4.9e-06 Score=102.65 Aligned_cols=163 Identities=20% Similarity=0.136 Sum_probs=105.9
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhC--CC
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA--PS 482 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~--p~ 482 (1125)
.-+-.+|.+-+ .....+...++..++-.|||.....++...++.. ..+.++.|+|. +++.|-..++..-+ +.
T Consensus 510 F~Pd~WQ~elL----DsvDr~eSavIVAPTSaGKTfisfY~iEKVLRes-D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 510 FCPDEWQRELL----DSVDRNESAVIVAPTSAGKTFISFYAIEKVLRES-DSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred cCCcHHHHHHh----hhhhcccceEEEeeccCCceeccHHHHHHHHhhc-CCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 35566887765 3445577788888999999999988887766653 46788999998 77777766665443 22
Q ss_pred ceEE-EEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHh---hhc--cCeeEEEEcCCcccCChh-hHHHHHHHc
Q 001197 483 IAAV-VYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKK--VQWIYMIVDEGHRLKNHE-CALAKTISG 555 (1125)
Q Consensus 483 ~~vi-vy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~---L~k--i~w~~VIIDEAHriKN~~-SklskaL~~ 555 (1125)
+... ..-|. +.....-..-..+|+||-.+.+..-.-. -.+ -+..|||+||+|.+.|.. +.....+-.
T Consensus 585 ~~rg~sl~g~------ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 585 FLRGVSLLGD------LTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL 658 (1330)
T ss_pred cccchhhHhh------hhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH
Confidence 2111 11111 1111111113578999999987543211 111 156799999999998854 455555655
Q ss_pred cccceEEEeecCCCCCChHHHHHHhh
Q 001197 556 YQIQRRLLLTGTPIQNSLQELWSLLN 581 (1125)
Q Consensus 556 l~s~~RLlLTGTPlqN~l~EL~sLL~ 581 (1125)
+-...-++|||| ++|+..+...++
T Consensus 659 li~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 659 LIPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred hcCCCeeEEecc--cCCHHHHHHHHH
Confidence 556678999999 577777776666
No 154
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.37 E-value=7.7e-06 Score=101.50 Aligned_cols=152 Identities=22% Similarity=0.185 Sum_probs=89.1
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHH-HHHHHccCCCCCEEEEcCcccHHH-HHHHHHhhCC--C
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALI-AYLLENKGVTGPHVIVAPKAVLPN-WINEFSTWAP--S 482 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali-~~L~e~~~~~gp~LIVvP~sll~q-W~~Ef~k~~p--~ 482 (1125)
.++++|.+.+. ......+.|.|.+.+++.|||+.+=-++ ..++.. .+..|.|.|-..+.+ =..++..+.- +
T Consensus 223 ~~fewq~ecls--~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~---rr~~llilp~vsiv~Ek~~~l~~~~~~~G 297 (1008)
T KOG0950|consen 223 KLFEWQAECLS--LPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR---RRNVLLILPYVSIVQEKISALSPFSIDLG 297 (1008)
T ss_pred HHHHHHHHHhc--chhhhcccceEEeCCCccchHHHHHHHHHHHHHHH---hhceeEecceeehhHHHHhhhhhhccccC
Confidence 56667777663 1223467788999999999998874433 333333 235677888744333 3344444432 3
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhc----cCeeEEEEcCCcccCC--hhhH----HHHH
Q 001197 483 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKK----VQWIYMIVDEGHRLKN--HECA----LAKT 552 (1125)
Q Consensus 483 ~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~k----i~w~~VIIDEAHriKN--~~Sk----lska 552 (1125)
+.+-.|.|....-+. ...-.|.|+|-|.-......|-. ....+|||||-|.+.. .+.- +++.
T Consensus 298 ~~ve~y~g~~~p~~~--------~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~ 369 (1008)
T KOG0950|consen 298 FPVEEYAGRFPPEKR--------RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKI 369 (1008)
T ss_pred CcchhhcccCCCCCc--------ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHH
Confidence 555566664221110 03456999999887665544432 2356899999999944 3333 3333
Q ss_pred HHc-c-ccceEEEeecCCCCC
Q 001197 553 ISG-Y-QIQRRLLLTGTPIQN 571 (1125)
Q Consensus 553 L~~-l-~s~~RLlLTGTPlqN 571 (1125)
+-. . ..-..+++|+|-..|
T Consensus 370 ~y~~~~~~~~iIGMSATi~N~ 390 (1008)
T KOG0950|consen 370 LYENLETSVQIIGMSATIPNN 390 (1008)
T ss_pred HHhccccceeEeeeecccCCh
Confidence 311 1 223479999996444
No 155
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.37 E-value=0.00021 Score=89.89 Aligned_cols=355 Identities=16% Similarity=0.214 Sum_probs=182.7
Q ss_pred CCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccH----HHHHHHHHhh
Q 001197 404 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL----PNWINEFSTW 479 (1125)
Q Consensus 404 ~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll----~qW~~Ef~k~ 479 (1125)
.|-.+++-|+-|.--| +.|.|.-..||=|||+++. +.+|+..-. ...+-||+++.-| ..|...+-+|
T Consensus 82 lG~r~ydVQliGgl~L------h~G~IAEM~TGEGKTL~at-lpaylnAL~--GkgVhVVTvNdYLA~RDae~m~~vy~~ 152 (939)
T PRK12902 82 LGMRHFDVQLIGGMVL------HEGQIAEMKTGEGKTLVAT-LPSYLNALT--GKGVHVVTVNDYLARRDAEWMGQVHRF 152 (939)
T ss_pred hCCCcchhHHHhhhhh------cCCceeeecCCCChhHHHH-HHHHHHhhc--CCCeEEEeCCHHHHHhHHHHHHHHHHH
Confidence 3567888888876433 3566888999999999764 344443322 2356677777554 3499999999
Q ss_pred CCCceEEEEcCC--hhHHHHHHHHHHhhcCCccEEEecHHHH-----HHhHHh----hhccCeeEEEEcCCcccCChhhH
Q 001197 480 APSIAAVVYDGR--PDERKAMREEFFSERGRFNVLITHYDLI-----MRDRQY----LKKVQWIYMIVDEGHRLKNHECA 548 (1125)
Q Consensus 480 ~p~~~vivy~G~--~~~R~~l~~~~~~~~~~fdVvITTYe~l-----~kd~~~----L~ki~w~~VIIDEAHriKN~~Sk 548 (1125)
+ ++.|-+..+. +..|+.. -..||+.+|-..+ +..... .....++++||||+..+-=.
T Consensus 153 L-GLtvg~i~~~~~~~err~a--------Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILID--- 220 (939)
T PRK12902 153 L-GLSVGLIQQDMSPEERKKN--------YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILID--- 220 (939)
T ss_pred h-CCeEEEECCCCChHHHHHh--------cCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeec---
Confidence 8 5665555442 3333221 3567888875433 433221 23347889999999986322
Q ss_pred HHHHHHccccceEEEeecCCCCCChHHHHHHhh----ccCCCCC-CChHHHHHHhcccccccCcccCChHHHHHHH----
Q 001197 549 LAKTISGYQIQRRLLLTGTPIQNSLQELWSLLN----FLLPTIF-NSVENFEEWFNAPFKDRGQVALTDEEQLLII---- 619 (1125)
Q Consensus 549 lskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~----fL~P~~f-~s~~~F~~~f~~p~~~~~~~~~~~ee~~~~i---- 619 (1125)
.++.-|++||.+-. ..++|...+ -|.+... .... .|. .......+.+++.....+-
T Consensus 221 --------EArTPLIISg~~~~--~~~~y~~~~~~~~~L~~~~~~~~~~----dy~-idek~~~v~LTe~G~~~~e~~~~ 285 (939)
T PRK12902 221 --------EARTPLIISGQVER--PQEKYQKAAEVAAALQRKDGIDPEG----DYE-VDEKQRNVLLTDEGFAKAEQLLG 285 (939)
T ss_pred --------cCCCcccccCCCcc--chHHHHHHHHHHHHhhhhcccCCCC----CeE-EecCCCeeeEcHHHHHHHHHHhC
Confidence 12334778886532 234443332 1111000 0000 000 0011122333332211110
Q ss_pred ------------HHHHhhhhhh-hhhhhHHHHhhhCCCCeEEEEEecCC-------HHHHHHHHHHHhhcccccccCC--
Q 001197 620 ------------RRLHHVIRPF-ILRRKKDEVEKYLPGKSQVILKCDMS-------AWQKVYYQQVTDVGRVGLDTGT-- 677 (1125)
Q Consensus 620 ------------~rL~~vL~pf-lLRR~K~dV~~~LP~k~e~vi~~~ms-------~~Q~~lY~~i~~~~~~~l~~~~-- 677 (1125)
..+...|+-. ++.| ++. ++-...+.++--.+| .++.-+-+.+..+....+....
T Consensus 286 i~nLy~~~~~~~~~i~~AL~A~~lf~~---d~d-YiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~t 361 (939)
T PRK12902 286 VSDLFDPQDPWAHYIFNALKAKELFIK---DVN-YIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQT 361 (939)
T ss_pred chhhcCcccHHHHHHHHHHHHHHHHhc---CCe-EEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCcee
Confidence 1111111110 1111 100 000001111111111 1222333333322221111100
Q ss_pred CccchHHH-----------------HHHHHHHhhCCCcccccccchhhH----HHH-HhhcchHHHHHHHhHHhhhCCCE
Q 001197 678 GKSKSLQN-----------------LSMQLRKCCNHPYLFVGEYNMWRK----EEI-IRASGKFELLDRLLPKLRKSGHR 735 (1125)
Q Consensus 678 ~k~~~l~n-----------------~~~qLRkicnhP~L~~~~~~~~~~----~~l-i~~S~Kle~L~~lL~kl~~~g~K 735 (1125)
...-.++| -...+.++.+-+.+..+...+... +.+ .....|+..+.+-+..+.+.|..
T Consensus 362 lAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrP 441 (939)
T PRK12902 362 LASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRP 441 (939)
T ss_pred eeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCC
Confidence 00111111 123466666666555443322111 111 12357889999888899999999
Q ss_pred EEEEeccchHHHHHHHHHHhCCCeEEEecCC-CCHHHHHHHHHHHcCCCCCceEEEeeccccccccCC
Q 001197 736 VLLFSQMTRLMDILEIYLKLNDFKFLRLDGS-TKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNL 802 (1125)
Q Consensus 736 VLIFsq~t~~ldiLe~~L~~~gi~~~rLdGs-ts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNL 802 (1125)
|||-|.+...-+.|...|...|+++-.++.. ...+.-..+|.+ +|... -+-|+|..+|+|-++
T Consensus 442 VLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~G--aVTIATNMAGRGTDI 505 (939)
T PRK12902 442 VLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKG--AVTIATNMAGRGTDI 505 (939)
T ss_pred EEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCC--cEEEeccCCCCCcCE
Confidence 9999999999999999999999999999986 333444556664 33332 368899999999664
No 156
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.31 E-value=5.5e-06 Score=105.15 Aligned_cols=169 Identities=20% Similarity=0.235 Sum_probs=104.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccH-HHHH---------HHHHhhCCC--ceEEEEcCCh--
Q 001197 427 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL-PNWI---------NEFSTWAPS--IAAVVYDGRP-- 492 (1125)
Q Consensus 427 ~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll-~qW~---------~Ef~k~~p~--~~vivy~G~~-- 492 (1125)
.+..+.+++|+|||.+++.+|.+|....+. ..+|||||...+ .-.. ..|...+++ +...+|....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~-~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGL-FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 455789999999999999999999877554 589999998433 2222 223333433 4555665432
Q ss_pred -hHH----HHHHHHHHhh----cCCccEEEecHHHHHHhHH------hh--hc--cCee-------EEEEcCCcccCChh
Q 001197 493 -DER----KAMREEFFSE----RGRFNVLITHYDLIMRDRQ------YL--KK--VQWI-------YMIVDEGHRLKNHE 546 (1125)
Q Consensus 493 -~~R----~~l~~~~~~~----~~~fdVvITTYe~l~kd~~------~L--~k--i~w~-------~VIIDEAHriKN~~ 546 (1125)
..| ..+. .+... .....|+|+|.+.|.++.. .+ .. ..|+ +||+||.|++.. .
T Consensus 139 k~gr~~~~~~i~-~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~ 216 (986)
T PRK15483 139 KSGRKNFPAQLS-NFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-D 216 (986)
T ss_pred ccccccChHHHH-HHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-c
Confidence 111 1111 22221 1257899999998866321 01 11 1222 799999999965 2
Q ss_pred hHHHHHHHccccceEEEeecCCCC-------CC--hHHHHHHhhccCCCCCCChHHHHHHhccccc
Q 001197 547 CALAKTISGYQIQRRLLLTGTPIQ-------NS--LQELWSLLNFLLPTIFNSVENFEEWFNAPFK 603 (1125)
Q Consensus 547 SklskaL~~l~s~~RLlLTGTPlq-------N~--l~EL~sLL~fL~P~~f~s~~~F~~~f~~p~~ 603 (1125)
.+...++..+.+.+.|.-|||--. |. ..+.++++= .++..+.|.+...+.+.
T Consensus 217 ~k~~~~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~d~~NlvY-----~LdavdAyn~~LVK~I~ 277 (986)
T PRK15483 217 NKFYQAIEALKPQMIIRFGATFPDITEGKGKNKCTRKDYYNLQF-----DLNAVDSFNDGLVKGVD 277 (986)
T ss_pred hHHHHHHHhcCcccEEEEeeecCCccccccccccccccccCcee-----ecCHHHHHHhCCcceEE
Confidence 346688899999999999999633 11 112444332 24567778776665443
No 157
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.27 E-value=5.2e-05 Score=96.01 Aligned_cols=110 Identities=21% Similarity=0.224 Sum_probs=80.0
Q ss_pred CCEEEEEeccchHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEE
Q 001197 733 GHRVLLFSQMTRLMDILEIYLKL----NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 808 (1125)
Q Consensus 733 g~KVLIFsq~t~~ldiLe~~L~~----~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~V 808 (1125)
..-+|||-.-....+.....|.. ..+.++-++|.++.++..+ -|+......+-+++||..+.++|.+.+..+|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 45689998888777777777765 4688999999999988877 4554444434369999999999999998888
Q ss_pred E--------EeCCCC----------ChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHH
Q 001197 809 I--------IFDSDW----------NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIE 848 (1125)
Q Consensus 809 I--------i~D~~W----------NP~~d~QAigRahRIGQkk~V~VyrLIt~~TIE 848 (1125)
| .||+-- +-+...||-|||+|. .+-.+|||.+++..+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~---~pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT---GPGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccC---CCceEEEecCHHHHH
Confidence 6 233321 234555777777775 567899999875544
No 158
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.26 E-value=7.1e-05 Score=94.69 Aligned_cols=127 Identities=20% Similarity=0.299 Sum_probs=90.2
Q ss_pred chHHHHHHHhHHhhhC--CCEEEEEeccchHHHHHHHHHH----hC---CCeEEEecCCCCHHHHHHHHHHHcCCCCCce
Q 001197 717 GKFELLDRLLPKLRKS--GHRVLLFSQMTRLMDILEIYLK----LN---DFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 787 (1125)
Q Consensus 717 ~Kle~L~~lL~kl~~~--g~KVLIFsq~t~~ldiLe~~L~----~~---gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~ 787 (1125)
-...++..++..+... ...||||-.-..-+..+...|. .. .+-+..+|++++..+.+.+ |+.+...++
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~R 471 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTR 471 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcc
Confidence 4556666666665543 4589999998877666666664 22 2667889999998777664 666666666
Q ss_pred EEEeeccccccccCCCCCCEEE--------EeCCCC----------ChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHH
Q 001197 788 MFLLSTRAGGLGLNLQTADTVI--------IFDSDW----------NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEE 849 (1125)
Q Consensus 788 VfLLSTrAGG~GLNLq~Ad~VI--------i~D~~W----------NP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE 849 (1125)
=+|++|..+..+|.+.++-+|| .|||-- +-+.-.||.|||+|. .+-.+|+|.+..-.+-
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv---~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV---RPGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc---cCCeeEEeechhhhhh
Confidence 6899999999999998876665 355532 334566888888874 6678999998765443
No 159
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.24 E-value=0.00022 Score=90.30 Aligned_cols=89 Identities=21% Similarity=0.298 Sum_probs=61.6
Q ss_pred HHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhC-CCeEEEecCCCCHHHHHHHHHHHcC----CCCCceEEEeecc
Q 001197 720 ELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN-DFKFLRLDGSTKTEERGTLLKQFNA----PDSPYFMFLLSTR 794 (1125)
Q Consensus 720 e~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~-gi~~~rLdGsts~~eR~~~I~~Fn~----~ds~~~VfLLSTr 794 (1125)
..+.+.+..+...+.++|||+.+-.+|+.+...|... ++. +...|.. .|..+++.|.. ++.. +|+.+.
T Consensus 521 ~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~---VL~g~~ 593 (697)
T PRK11747 521 AEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGS---VLFGLQ 593 (697)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCe---EEEEec
Confidence 3444444444445556899888888899888888642 333 3445642 47788877763 3333 577789
Q ss_pred ccccccCCCC--CCEEEEeCCCC
Q 001197 795 AGGLGLNLQT--ADTVIIFDSDW 815 (1125)
Q Consensus 795 AGG~GLNLq~--Ad~VIi~D~~W 815 (1125)
+..+|||+++ +..|||.-.|+
T Consensus 594 sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 594 SFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred cccccccCCCCceEEEEEEcCCC
Confidence 9999999986 78999987776
No 160
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.23 E-value=0.00013 Score=88.20 Aligned_cols=110 Identities=19% Similarity=0.219 Sum_probs=75.6
Q ss_pred EEEEEeccchHHHHHHHHHHh----CCC----eEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCC
Q 001197 735 RVLLFSQMTRLMDILEIYLKL----NDF----KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTAD 806 (1125)
Q Consensus 735 KVLIFsq~t~~ldiLe~~L~~----~gi----~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad 806 (1125)
-+|||=.-....+.+...|.. .+- -++-++|+++.++..+ -|......++-+++||..+.+.|.+.+.-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~r---vF~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSR---VFDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhc---cccCCCCCcceEEEEcceeeeeEEecceE
Confidence 588888777655555555432 221 2577999999987654 46555545666899999999999999987
Q ss_pred EEE--------EeCCCC-------ChhhHHHHHhhhcccCCCCcEEEEEEEeCCCH
Q 001197 807 TVI--------IFDSDW-------NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 847 (1125)
Q Consensus 807 ~VI--------i~D~~W-------NP~~d~QAigRahRIGQkk~V~VyrLIt~~TI 847 (1125)
+|| .|+|.- -|..-.||.-|++|-|-+.+..+|||.++.-.
T Consensus 337 YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 337 YVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 775 343311 12234466666666666778999999998765
No 161
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.22 E-value=2.7e-06 Score=96.86 Aligned_cols=96 Identities=21% Similarity=0.279 Sum_probs=88.1
Q ss_pred CCCEEEEEeccchHHHHHHHHHHhCC---CeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEE
Q 001197 732 SGHRVLLFSQMTRLMDILEIYLKLND---FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 808 (1125)
Q Consensus 732 ~g~KVLIFsq~t~~ldiLe~~L~~~g---i~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~V 808 (1125)
.-.+.||||....-.|-|+.++..+| |..+-++|..++.+|.+.++.|...+-. |||+|+++..||+++..-.|
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk---flictdvaargldi~g~p~~ 580 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK---FLICTDVAARGLDITGLPFM 580 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE---EEEEehhhhccccccCCceE
Confidence 35689999999999999999998764 5788899999999999999999998866 99999999999999999999
Q ss_pred EEeCCCCChhhHHHHHhhhccc
Q 001197 809 IIFDSDWNPQMDQQAEDRAHRI 830 (1125)
Q Consensus 809 Ii~D~~WNP~~d~QAigRahRI 830 (1125)
|...+|-....|.+++||++|.
T Consensus 581 invtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 581 INVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEEecCcccchhhhhhhccchh
Confidence 9999999999999999988774
No 162
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.19 E-value=6.3e-05 Score=93.48 Aligned_cols=111 Identities=21% Similarity=0.401 Sum_probs=79.0
Q ss_pred HHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecccccc
Q 001197 719 FELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL 798 (1125)
Q Consensus 719 le~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~ 798 (1125)
......++..+ ..|++|.|||....+.+++++++...+.+++.++|..+..+ ++.+. .+.| ++=|.+...
T Consensus 269 ~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W~----~~~V-viYT~~itv 338 (824)
T PF02399_consen 269 TTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESWK----KYDV-VIYTPVITV 338 (824)
T ss_pred hhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----ccccc----ceeE-EEEeceEEE
Confidence 34445555544 56999999999999999999999999999999999877653 23333 2555 555666777
Q ss_pred ccCCCC--CCEEEEe--CCCCChhh--HHHHHhhhcccCCCCcEEEEE
Q 001197 799 GLNLQT--ADTVIIF--DSDWNPQM--DQQAEDRAHRIGQKKEVRVFV 840 (1125)
Q Consensus 799 GLNLq~--Ad~VIi~--D~~WNP~~--d~QAigRahRIGQkk~V~Vyr 840 (1125)
|+++-. -|.|+.| .....|.+ ..|.+||+..++. +++.||.
T Consensus 339 G~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~ 385 (824)
T PF02399_consen 339 GLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYI 385 (824)
T ss_pred EeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEE
Confidence 887754 5777666 33344665 5899999999874 4455554
No 163
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.14 E-value=0.00014 Score=88.17 Aligned_cols=246 Identities=17% Similarity=0.218 Sum_probs=130.1
Q ss_pred CCCccCCCCccHHHHHHHHHHHHhhcc------CCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHH
Q 001197 399 QPTLLQGGELRAYQLEGLQWMLSLFNN------NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 472 (1125)
Q Consensus 399 qP~~l~g~~LrpYQ~egv~wml~l~~~------~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW 472 (1125)
.|. +..+.|-..|+++|.+....+.. ..|-+|.|..|.||-.+...+|...+- ++.++.+.|-|...|-..-
T Consensus 257 lP~-i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyL-kGRKrAlW~SVSsDLKfDA 334 (1300)
T KOG1513|consen 257 LPS-IDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYL-KGRKRALWFSVSSDLKFDA 334 (1300)
T ss_pred ccc-CcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhh-cccceeEEEEeccccccch
Confidence 444 34578999999999999876432 234478999999987666555543222 2233345555666776666
Q ss_pred HHHHHhhC-CCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH--------Hhhhc-cCe------eEEEE
Q 001197 473 INEFSTWA-PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--------QYLKK-VQW------IYMIV 536 (1125)
Q Consensus 473 ~~Ef~k~~-p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~--------~~L~k-i~w------~~VII 536 (1125)
.+.+.... +.+.|.....-+ -..+.. ..+...+-.|+++||..++-+. ..|.. +.| .+||+
T Consensus 335 ERDL~DigA~~I~V~alnK~K--YakIss-~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvf 411 (1300)
T KOG1513|consen 335 ERDLRDIGATGIAVHALNKFK--YAKISS-KENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVF 411 (1300)
T ss_pred hhchhhcCCCCccceehhhcc--cccccc-cccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEe
Confidence 67776653 333332221110 000000 0011133459999999886431 11221 123 38999
Q ss_pred cCCcccCC-------hhhHHHHHH----HccccceEEEeecCCCCCChHHHHHHhhcc---CCCCCCChHHHHHHhcccc
Q 001197 537 DEGHRLKN-------HECALAKTI----SGYQIQRRLLLTGTPIQNSLQELWSLLNFL---LPTIFNSVENFEEWFNAPF 602 (1125)
Q Consensus 537 DEAHriKN-------~~SklskaL----~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL---~P~~f~s~~~F~~~f~~p~ 602 (1125)
||||+.|| ..+++.+++ +.++..+.+..|||--.. +..+.-+.++- .-..|+++..|.......
T Consensus 412 DECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsE-PrNMaYM~RLGlWGegtaf~eF~eFi~AvEkR- 489 (1300)
T KOG1513|consen 412 DECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASE-PRNMAYMVRLGLWGEGTAFPEFEEFIHAVEKR- 489 (1300)
T ss_pred hhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCC-cchhhhhhhhccccCCCcCccHHHHHHHHHhc-
Confidence 99999999 234444444 455777888889885332 11122222221 122344554444433221
Q ss_pred cccCcccCChHHHHHHHHHHHhhhhhhhhhhhHHHHhhhCCCCeEEEEEecCCHHHHHHHHHHH
Q 001197 603 KDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT 666 (1125)
Q Consensus 603 ~~~~~~~~~~ee~~~~i~rL~~vL~pflLRR~K~dV~~~LP~k~e~vi~~~ms~~Q~~lY~~i~ 666 (1125)
..+..++-.-+ -.++...+-|- -.+-.....+-.++|+++-+..|+...
T Consensus 490 -GvGAMEIVAMD---------MK~rGmYiARQ-----LSFkgVsFrieEv~ls~eF~k~Yn~a~ 538 (1300)
T KOG1513|consen 490 -GVGAMEIVAMD---------MKLRGMYIARQ-----LSFKGVSFRIEEVPLSKEFRKVYNRAA 538 (1300)
T ss_pred -CCceeeeeehh---------hhhhhhhhhhh-----ccccCceEEEEecccCHHHHHHHHHHH
Confidence 11111111100 01122222111 124455677888999999999998643
No 164
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.13 E-value=0.00023 Score=85.55 Aligned_cols=93 Identities=18% Similarity=0.238 Sum_probs=64.7
Q ss_pred CCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCC----CCCh-----------hhHH
Q 001197 757 DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDS----DWNP-----------QMDQ 821 (1125)
Q Consensus 757 gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~----~WNP-----------~~d~ 821 (1125)
++.++-|...++.+-.. +-|+.....++-.+++|..+.+.|.+.+..+||=... -+|| ..-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~---kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQA---KIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhh---hhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 67788888888876554 4566556667778999999999999999888873211 1233 2223
Q ss_pred HHHhhhcccCCCCcEEEEEEEeCCCHHHHHH
Q 001197 822 QAEDRAHRIGQKKEVRVFVLVSVGSIEEVIL 852 (1125)
Q Consensus 822 QAigRahRIGQkk~V~VyrLIt~~TIEE~Il 852 (1125)
+|--|++|-|.+.+-.+||+.|+++....|+
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 3334444444456789999999988877776
No 165
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.11 E-value=3.1e-05 Score=87.85 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=54.1
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHH-HHHHccCC--CCCEEEEcCc-ccHHHHHHHHHhh
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA-YLLENKGV--TGPHVIVAPK-AVLPNWINEFSTW 479 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~-~L~e~~~~--~gp~LIVvP~-sll~qW~~Ef~k~ 479 (1125)
.+.||.|.+-..-+...+.++.++|+-.++|+|||+..+..+. ++...+.. ..++++++++ +.+.+-..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4679999999999999888899999999999999999987664 44433221 2367777776 4445545555543
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.11 E-value=3.1e-05 Score=87.85 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=54.1
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHH-HHHHccCC--CCCEEEEcCc-ccHHHHHHHHHhh
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA-YLLENKGV--TGPHVIVAPK-AVLPNWINEFSTW 479 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~-~L~e~~~~--~gp~LIVvP~-sll~qW~~Ef~k~ 479 (1125)
.+.||.|.+-..-+...+.++.++|+-.++|+|||+..+..+. ++...+.. ..++++++++ +.+.+-..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4679999999999999888899999999999999999987664 44433221 2367777776 4445545555543
No 167
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.09 E-value=2.4e-05 Score=79.11 Aligned_cols=125 Identities=15% Similarity=0.132 Sum_probs=69.5
Q ss_pred CeEEEcCCCchHHHHHHH-HHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhc
Q 001197 428 NGILADEMGLGKTIQTIA-LIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSER 506 (1125)
Q Consensus 428 ~GILADEMGLGKTiqaIa-li~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~~~ 506 (1125)
-.+|-.-.|.|||-..+- ++...+. ..+.+||+.|+-++ .+|..+...+..+.+ +.+.-.+.. .
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~~~~~i~---~~~rvLvL~PTRvv---a~em~~aL~~~~~~~-~t~~~~~~~--------~ 70 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEIVREAIK---RRLRVLVLAPTRVV---AEEMYEALKGLPVRF-HTNARMRTH--------F 70 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHHHHHHHH---TT--EEEEESSHHH---HHHHHHHTTTSSEEE-ESTTSS------------
T ss_pred eeEEecCCCCCCcccccHHHHHHHHH---ccCeEEEecccHHH---HHHHHHHHhcCCccc-Cceeeeccc--------c
Confidence 346777899999988764 3333333 34689999999665 344555444444332 222211110 1
Q ss_pred CCccEEEecHHHHHHhH-HhhhccCeeEEEEcCCcccCChhhHHHHHH-Hcc---ccceEEEeecCC
Q 001197 507 GRFNVLITHYDLIMRDR-QYLKKVQWIYMIVDEGHRLKNHECALAKTI-SGY---QIQRRLLLTGTP 568 (1125)
Q Consensus 507 ~~fdVvITTYe~l~kd~-~~L~ki~w~~VIIDEAHriKN~~SklskaL-~~l---~s~~RLlLTGTP 568 (1125)
+.-.|-+++|.++..-. ......+|++||+||||-. ++.|-...-. ..+ .....+++||||
T Consensus 71 g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 71 GSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred CCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 56678889998876532 2233458999999999984 5554433333 333 223689999999
No 168
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.02 E-value=1e-05 Score=90.47 Aligned_cols=93 Identities=16% Similarity=0.214 Sum_probs=75.5
Q ss_pred HHHHHHcCCCCCceEEEeeccccccccCCCCC--------CEEEEeCCCCChhhHHHHHhhhcccCCCCcEEEEEEEeCC
Q 001197 774 TLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTA--------DTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 845 (1125)
Q Consensus 774 ~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~A--------d~VIi~D~~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~ 845 (1125)
...+.|+++... |+|+ +.||++||+||+- ..-|.+++||+....+|..||+||-||..+..+..+++.-
T Consensus 52 ~e~~~F~~g~k~--v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGEKD--VAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCCce--EEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 456799997644 5555 5999999999953 2346799999999999999999999999987666777777
Q ss_pred CHHHHHHHHHHHHhhHHHHHHhcC
Q 001197 846 SIEEVILERAKQKMGIDAKVIQAG 869 (1125)
Q Consensus 846 TIEE~Il~r~~~Kl~l~~~VI~~g 869 (1125)
..|.+......+|+.--.+...+.
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt~gd 152 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALTRGD 152 (278)
T ss_pred HHHHHHHHHHHHHHhhccccccCc
Confidence 789999999999987766665543
No 169
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=97.96 E-value=7e-06 Score=63.94 Aligned_cols=30 Identities=27% Similarity=0.647 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHhhhCCCCChhHHhhhh
Q 001197 17 PVERTKSLICALNFISRNLPVPPDVYDTVS 46 (1125)
Q Consensus 17 ~~~~~~~~i~a~~~lsrn~p~p~~~~~~~~ 46 (1125)
-++++|+||.|||+|+||.|||++|+..++
T Consensus 7 Ql~~L~~Qi~ayK~l~~~~pVP~~l~~~I~ 36 (37)
T PF08880_consen 7 QLQELRAQILAYKYLARNQPVPPQLQQAIQ 36 (37)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHhhh
Confidence 467999999999999999999999998863
No 170
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.93 E-value=8.4e-05 Score=79.79 Aligned_cols=68 Identities=26% Similarity=0.352 Sum_probs=47.7
Q ss_pred CccHHHHHHHHHHHHhhccCCC-eEEEcCCCchHHHHHHHHHHHHHH-----ccCCCCCEEEEcCc-ccHHHHHHHHHh
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLN-GILADEMGLGKTIQTIALIAYLLE-----NKGVTGPHVIVAPK-AVLPNWINEFST 478 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~-GILADEMGLGKTiqaIali~~L~e-----~~~~~gp~LIVvP~-sll~qW~~Ef~k 478 (1125)
+|-+.|.+++..++. ... .++..+.|+|||-+..+++..+.. .....+++||++|+ ..+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 478999999976654 344 788999999999887788777732 24556789999998 667887777776
No 171
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.0002 Score=87.43 Aligned_cols=79 Identities=24% Similarity=0.373 Sum_probs=59.1
Q ss_pred EEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEE--------EeCC---------CC-ChhhHH
Q 001197 760 FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVI--------IFDS---------DW-NPQMDQ 821 (1125)
Q Consensus 760 ~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VI--------i~D~---------~W-NP~~d~ 821 (1125)
++-|..=.+.++. +.-|.......++.+++|.++.+.|.+++..+|| .||. +| +-+.-.
T Consensus 607 vLPLYSLLs~~~Q---~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASad 683 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQ---MRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASAD 683 (1172)
T ss_pred EeehhhhcCHHHh---hhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccc
Confidence 4556666666544 4557666667888999999999999999999887 2443 44 456677
Q ss_pred HHHhhhcccCCCCcEEEEEEEeC
Q 001197 822 QAEDRAHRIGQKKEVRVFVLVSV 844 (1125)
Q Consensus 822 QAigRahRIGQkk~V~VyrLIt~ 844 (1125)
||.|||+|+|- -++|||.+.
T Consensus 684 QRAGRAGRtgp---GHcYRLYSS 703 (1172)
T KOG0926|consen 684 QRAGRAGRTGP---GHCYRLYSS 703 (1172)
T ss_pred hhccccCCCCC---Cceeehhhh
Confidence 99999999984 578888754
No 172
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.76 E-value=0.0014 Score=78.93 Aligned_cols=83 Identities=22% Similarity=0.302 Sum_probs=59.5
Q ss_pred CCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCC------Ch-------------
Q 001197 757 DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDW------NP------------- 817 (1125)
Q Consensus 757 gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~W------NP------------- 817 (1125)
.+-++-|+.+.+.+....+ |......++-++|.|..+.+.|.+.+...|| ||-+ ||
T Consensus 506 eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piS 580 (902)
T KOG0923|consen 506 ELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPIS 580 (902)
T ss_pred eEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeec
Confidence 4557888999998877665 4443444566799999999999988877775 4433 33
Q ss_pred -hhHHHHHhhhcccCCCCcEEEEEEEeCCCH
Q 001197 818 -QMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 847 (1125)
Q Consensus 818 -~~d~QAigRahRIGQkk~V~VyrLIt~~TI 847 (1125)
+.-.||.|||+|.|- -.+|||.|..+.
T Consensus 581 KAsA~QRaGRAGRtgP---GKCfRLYt~~aY 608 (902)
T KOG0923|consen 581 KASANQRAGRAGRTGP---GKCFRLYTAWAY 608 (902)
T ss_pred hhhhhhhccccCCCCC---CceEEeechhhh
Confidence 456788888888774 468888885443
No 173
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.70 E-value=0.034 Score=71.76 Aligned_cols=47 Identities=21% Similarity=0.131 Sum_probs=35.4
Q ss_pred ceEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCCCCc
Q 001197 786 YFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 835 (1125)
Q Consensus 786 ~~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQkk~ 835 (1125)
..+++|+|.+...|+++ ++|.+|.--+ .-...+|+.||+.|-|+...
T Consensus 838 ~~~i~v~Tqv~E~g~D~-dfd~~~~~~~--~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 838 HLFIVLATPVEEVGRDH-DYDWAIADPS--SMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred CCeEEEEeeeEEEEecc-cCCeeeeccC--cHHHHHHHhhcccccccCCC
Confidence 44679999999999995 4666664222 34568999999999997643
No 174
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.61 E-value=0.00023 Score=84.16 Aligned_cols=101 Identities=26% Similarity=0.285 Sum_probs=79.8
Q ss_pred hCCCEEEEEeccchHHHHHHHHHHhCCCe-EEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEE
Q 001197 731 KSGHRVLLFSQMTRLMDILEIYLKLNDFK-FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVI 809 (1125)
Q Consensus 731 ~~g~KVLIFsq~t~~ldiLe~~L~~~gi~-~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VI 809 (1125)
.+|.-|+-||.-.- -.+...+..+|.. .+.|.|+.+++.|.+.-..||++++++.| |+.|+|.|.||||. .++||
T Consensus 356 k~GDCvV~FSkk~I--~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAsDAIGMGLNL~-IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKKDI--FTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVASDAIGMGLNLN-IRRII 431 (700)
T ss_pred CCCCeEEEeehhhH--HHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEeecccccccccc-eeEEE
Confidence 46888888886521 1223334445544 99999999999999999999998888876 88999999999974 78999
Q ss_pred EeCCC---------CChhhHHHHHhhhcccCCCCc
Q 001197 810 IFDSD---------WNPQMDQQAEDRAHRIGQKKE 835 (1125)
Q Consensus 810 i~D~~---------WNP~~d~QAigRahRIGQkk~ 835 (1125)
+++.- -...+..|.-|||+|.|.+-+
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 98874 355678899999999997744
No 175
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.36 E-value=0.00098 Score=82.51 Aligned_cols=161 Identities=20% Similarity=0.251 Sum_probs=101.6
Q ss_pred hccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHH--------HHHHH-HhhCCC--ceEEEEcCC
Q 001197 423 FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN--------WINEF-STWAPS--IAAVVYDGR 491 (1125)
Q Consensus 423 ~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~q--------W~~Ef-~k~~p~--~~vivy~G~ 491 (1125)
....+|.=+-+|+|+|||.+-+-+|..|....+.. .++||||...+.- -.++| ...+.+ +..++|...
T Consensus 71 ~~~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~-KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~ 149 (985)
T COG3587 71 IDDKLNIDILMETGTGKTYTYLRTMFELHKKYGLF-KFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDED 149 (985)
T ss_pred CCCcceeeEEEecCCCceeeHHHHHHHHHHHhCce-eEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechH
Confidence 44556666779999999999999998887766554 7999999843311 23344 444443 334444311
Q ss_pred hhHHHHHHHHHHhhcCCccEEEecHHHHHHh---HHh---------------------hhccCeeEEEEcCCcccCChhh
Q 001197 492 PDERKAMREEFFSERGRFNVLITHYDLIMRD---RQY---------------------LKKVQWIYMIVDEGHRLKNHEC 547 (1125)
Q Consensus 492 ~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd---~~~---------------------L~ki~w~~VIIDEAHriKN~~S 547 (1125)
..+ ..+...+.+.|+|.+...+.++ ... +...++ .|||||-|++... .
T Consensus 150 -~~~-----~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rP-IvIvDEPh~f~~~-~ 221 (985)
T COG3587 150 -IEK-----FKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRP-IVIVDEPHRFLGD-D 221 (985)
T ss_pred -HHH-----HhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCC-EEEecChhhcccc-h
Confidence 111 1222336788999998888765 211 222222 7999999999876 7
Q ss_pred HHHHHHHccccceEEEeecCCCCCChHHHHHHhhccCCCCCCChHHHHHHhccc
Q 001197 548 ALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAP 601 (1125)
Q Consensus 548 klskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s~~~F~~~f~~p 601 (1125)
+.+.++..+.+...+=-+||- .+-|.-+-| .+.+...|.+...+.
T Consensus 222 k~~~~i~~l~pl~ilRfgATf-----kd~y~~l~y----rLDsi~Af~~~LVK~ 266 (985)
T COG3587 222 KTYGAIKQLNPLLILRFGATF-----KDEYNNLVY----RLDSIDAFNQKLVKQ 266 (985)
T ss_pred HHHHHHHhhCceEEEEecccc-----hhhhcCeeE----EeeHHhhhhhhhhhh
Confidence 889999999888888888883 233321111 235666676665543
No 176
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.34 E-value=0.034 Score=70.34 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=89.8
Q ss_pred hhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeec
Q 001197 714 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 793 (1125)
Q Consensus 714 ~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLST 793 (1125)
....|+..+..-+...+..|..|||-+.+...-+.+...|...|++...|+-.-. .++.-|-.+- +..+ .+-++|
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~A-G~~g--aVTiAT 484 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQA-GQPG--AVTIAT 484 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhc-CCCC--cccccc
Confidence 3457999999999999999999999999999999999999999999988877544 4444444442 2322 357899
Q ss_pred cccccccCCCC-CC----------EEEEeCCCCChhhHHHHHhhhcccCCC
Q 001197 794 RAGGLGLNLQT-AD----------TVIIFDSDWNPQMDQQAEDRAHRIGQK 833 (1125)
Q Consensus 794 rAGG~GLNLq~-Ad----------~VIi~D~~WNP~~d~QAigRahRIGQk 833 (1125)
..+|+|-++.- .+ +||--.-.=+-..+.|--||++|.|-.
T Consensus 485 NMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 485 NMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred ccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 99999999874 32 455556666777788999999999943
No 177
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.24 E-value=0.001 Score=71.79 Aligned_cols=143 Identities=22% Similarity=0.270 Sum_probs=67.4
Q ss_pred ccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceEEE
Q 001197 408 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVV 487 (1125)
Q Consensus 408 LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~viv 487 (1125)
+-+.|...+..|. +..-.++....|+|||+.|++....+... +....++|+-|..-+..+. -|.|
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~l----Gflp------ 69 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGEDL----GFLP------ 69 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT--------SS-------
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCcccc----ccCC------
Confidence 4568999998777 35567888999999999999999888876 3445667776765332211 1111
Q ss_pred EcCChhHH-----HHHHHHHHhh---------cCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHH
Q 001197 488 YDGRPDER-----KAMREEFFSE---------RGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTI 553 (1125)
Q Consensus 488 y~G~~~~R-----~~l~~~~~~~---------~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL 553 (1125)
|+..+. ..+.+.+..- ...-.|-+.+..+++- ..+...+||||||+++... .+...+
T Consensus 70 --G~~~eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRG-----rt~~~~~iIvDEaQN~t~~--~~k~il 140 (205)
T PF02562_consen 70 --GDLEEKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRG-----RTFDNAFIIVDEAQNLTPE--ELKMIL 140 (205)
T ss_dssp ----------TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT-------B-SEEEEE-SGGG--HH--HHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcC-----ccccceEEEEecccCCCHH--HHHHHH
Confidence 110000 0000000000 0111233333222211 1245689999999998544 445556
Q ss_pred HccccceEEEeecCCCCCChH
Q 001197 554 SGYQIQRRLLLTGTPIQNSLQ 574 (1125)
Q Consensus 554 ~~l~s~~RLlLTGTPlqN~l~ 574 (1125)
.++....+++++|-|.|....
T Consensus 141 TR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 141 TRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp TTB-TT-EEEEEE--------
T ss_pred cccCCCcEEEEecCceeecCC
Confidence 888889999999999887655
No 178
>PRK10536 hypothetical protein; Provisional
Probab=97.11 E-value=0.0022 Score=71.31 Aligned_cols=146 Identities=17% Similarity=0.104 Sum_probs=84.0
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCce--
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA-- 484 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~-- 484 (1125)
..-..|...+.++.. +...++-.+.|+|||..++++....+..+. ...++|+-|.-.. .|.-.|.|+-.
T Consensus 59 p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~----ge~LGfLPG~~~e 129 (262)
T PRK10536 59 ARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQA----DEDLGFLPGDIAE 129 (262)
T ss_pred CCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCc----hhhhCcCCCCHHH
Confidence 345678888877754 456788899999999999999886554332 3344444444322 23333333210
Q ss_pred -EEE-----------EcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHH
Q 001197 485 -AVV-----------YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKT 552 (1125)
Q Consensus 485 -viv-----------y~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~Sklska 552 (1125)
+.. +.|... + ...... ..-.|-|.+..+++-. .+.-.+||||||+++.- ..+...
T Consensus 130 K~~p~~~pi~D~L~~~~~~~~----~-~~~~~~-~~~~Iei~~l~ymRGr-----tl~~~~vIvDEaqn~~~--~~~k~~ 196 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGASF----M-QYCLRP-EIGKVEIAPFAYMRGR-----TFENAVVILDEAQNVTA--AQMKMF 196 (262)
T ss_pred HHHHHHHHHHHHHHHHhChHH----H-HHHHHh-ccCcEEEecHHHhcCC-----cccCCEEEEechhcCCH--HHHHHH
Confidence 000 001100 0 000000 1123455554444321 23457999999999864 345555
Q ss_pred HHccccceEEEeecCCCCCChH
Q 001197 553 ISGYQIQRRLLLTGTPIQNSLQ 574 (1125)
Q Consensus 553 L~~l~s~~RLlLTGTPlqN~l~ 574 (1125)
+.++....+++++|-|-|.++.
T Consensus 197 ltR~g~~sk~v~~GD~~QiD~p 218 (262)
T PRK10536 197 LTRLGENVTVIVNGDITQCDLP 218 (262)
T ss_pred HhhcCCCCEEEEeCChhhccCC
Confidence 6888899999999999877653
No 179
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.96 E-value=0.0067 Score=73.42 Aligned_cols=148 Identities=17% Similarity=0.260 Sum_probs=95.2
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCccc-HHHHHHHHHhhCCCce
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV-LPNWINEFSTWAPSIA 484 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sl-l~qW~~Ef~k~~p~~~ 484 (1125)
.+|-.-|..||...+. +.=.||-.+.|+|||+++-+++.++.+. ..+|+||++|..+ ++|-..-|.+-. ++
T Consensus 409 pkLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~tg--LK 480 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKTG--LK 480 (935)
T ss_pred hhhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhcC--ce
Confidence 4889999999988875 4557899999999999998888888776 4689999999965 788888887743 44
Q ss_pred EEEEcCChhH----------------------HHHHHHHH----------------------HhhcCCccEEEecHHHHH
Q 001197 485 AVVYDGRPDE----------------------RKAMREEF----------------------FSERGRFNVLITHYDLIM 520 (1125)
Q Consensus 485 vivy~G~~~~----------------------R~~l~~~~----------------------~~~~~~fdVvITTYe~l~ 520 (1125)
|+-......+ ...+.... ..-....+||.||.-..-
T Consensus 481 VvRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~Ag 560 (935)
T KOG1802|consen 481 VVRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVGAG 560 (935)
T ss_pred EeeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEeccccc
Confidence 4422211100 00000000 000134566666643221
Q ss_pred HhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHccccceEEEeecC
Q 001197 521 RDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGT 567 (1125)
Q Consensus 521 kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l~s~~RLlLTGT 567 (1125)
...|.+++|..|+||||-....+.+-.--.+ ..+.+.|-|-
T Consensus 561 --d~rl~~~kfr~VLiDEaTQatEpe~LiPlvl----G~kq~VlVGD 601 (935)
T KOG1802|consen 561 --DRRLSKFKFRTVLIDEATQATEPECLIPLVL----GAKQLVLVGD 601 (935)
T ss_pred --chhhccccccEEEEecccccCCcchhhhhhh----cceeEEEecc
Confidence 2346778999999999987766655433322 3445666664
No 180
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.91 E-value=0.005 Score=77.39 Aligned_cols=127 Identities=10% Similarity=-0.023 Sum_probs=87.3
Q ss_pred CCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEE
Q 001197 435 MGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLI 513 (1125)
Q Consensus 435 MGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvI 513 (1125)
.|+|||-..+.++...+..+ +.+||++|. ++..|+..-|...|+...+.+||..-..............+...|||
T Consensus 169 ~GSGKTevyl~~i~~~l~~G---k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IVi 245 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG---RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVV 245 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC---CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEE
Confidence 39999999999998887753 468999999 88999999999999866777787754443333322222337789999
Q ss_pred ecHHHHHHhHHhhhccCeeEEEEcCCccc--CChhh-----H-HHHHHHccccceEEEeecCCC
Q 001197 514 THYDLIMRDRQYLKKVQWIYMIVDEGHRL--KNHEC-----A-LAKTISGYQIQRRLLLTGTPI 569 (1125)
Q Consensus 514 TTYe~l~kd~~~L~ki~w~~VIIDEAHri--KN~~S-----k-lskaL~~l~s~~RLlLTGTPl 569 (1125)
-|...+.- .--+..+|||||=|.- |...+ . +............++-|+||-
T Consensus 246 GtRSAvFa-----P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 246 GTRSAVFA-----PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred EcceeEEe-----ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 99876522 2226689999999874 43222 1 111113335566778899993
No 181
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.89 E-value=0.04 Score=65.00 Aligned_cols=60 Identities=27% Similarity=0.386 Sum_probs=46.7
Q ss_pred EEEeeccccccccCCCCCCEEEEeCCCC------C-----------hhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHH
Q 001197 788 MFLLSTRAGGLGLNLQTADTVIIFDSDW------N-----------PQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEE 849 (1125)
Q Consensus 788 VfLLSTrAGG~GLNLq~Ad~VIi~D~~W------N-----------P~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE 849 (1125)
-+++||..+...|.+.+.-+|| ||-+ | |..-.||+-|++|.|.+++-..|+|.|+...+.
T Consensus 315 kvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~ 391 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEK 391 (699)
T ss_pred eEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhh
Confidence 4689999999998877655554 5532 3 456669999999999999999999999865543
No 182
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.88 E-value=0.0077 Score=67.60 Aligned_cols=153 Identities=16% Similarity=0.144 Sum_probs=87.3
Q ss_pred CCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHH----HHHHHHHhhC
Q 001197 405 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLP----NWINEFSTWA 480 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~----qW~~Ef~k~~ 480 (1125)
|..+++-|+-|+--| ..|-|.-..+|=|||+++..++ ++..-. ..++=||+.+..|. +|...|-+++
T Consensus 75 g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a-~~~AL~--G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPA-ALNALQ--GKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp S----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHH-HHHHTT--SS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHH-HHHHHh--cCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 567888888887544 2344888999999999985444 333322 23566777775553 3888888888
Q ss_pred CCceEEEEcCCh-hHHHHHHHHHHhhcCCccEEEecHHHHHHhH--Hh-------hhccCeeEEEEcCCcccCCh-----
Q 001197 481 PSIAAVVYDGRP-DERKAMREEFFSERGRFNVLITHYDLIMRDR--QY-------LKKVQWIYMIVDEGHRLKNH----- 545 (1125)
Q Consensus 481 p~~~vivy~G~~-~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~--~~-------L~ki~w~~VIIDEAHriKN~----- 545 (1125)
.--.-+++.+.+ ..|+.. -..+|+.+|-..+.-|. +. .....++++||||+..+-=.
T Consensus 146 Glsv~~~~~~~~~~~r~~~--------Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~LiDea~~p 217 (266)
T PF07517_consen 146 GLSVGIITSDMSSEERREA--------YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILIDEARTP 217 (266)
T ss_dssp T--EEEEETTTEHHHHHHH--------HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTTTGCCSE
T ss_pred hhccccCccccCHHHHHHH--------HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEEecCccc
Confidence 433334445443 233322 13568888877665431 11 11347889999999876210
Q ss_pred -------------------hhHHHHHH-HccccceEEEeecCCCCCChHHHH
Q 001197 546 -------------------ECALAKTI-SGYQIQRRLLLTGTPIQNSLQELW 577 (1125)
Q Consensus 546 -------------------~SklskaL-~~l~s~~RLlLTGTPlqN~l~EL~ 577 (1125)
.+-..+.+ +.|. ...+|||| ....-.|+|
T Consensus 218 l~is~~Ke~~~i~~~~~t~a~is~q~~f~~Y~--~l~GmTGT-a~~~~~e~~ 266 (266)
T PF07517_consen 218 LIISGAKEGLKITPESLTLASISYQNFFRLYP--KLSGMTGT-AKTEAKEFW 266 (266)
T ss_dssp EEEEEHHTTS----SEEEEEEEEHHHHHTTSS--EEEEEESS-TGGGHHHHH
T ss_pred ccccccccCCccCCCCeEEEEeehHHHHHhcc--hheeeCCC-ChhhHhhcC
Confidence 01112222 3332 37899999 666677776
No 183
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.78 E-value=0.0039 Score=61.29 Aligned_cols=115 Identities=15% Similarity=0.159 Sum_probs=60.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHcc---CCCCCEEEEcCccc-HHHHHHHHHhhCC-CceEEEEcCChhHHHHHHH
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLENK---GVTGPHVIVAPKAV-LPNWINEFSTWAP-SIAAVVYDGRPDERKAMRE 500 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e~~---~~~gp~LIVvP~sl-l~qW~~Ef~k~~p-~~~vivy~G~~~~R~~l~~ 500 (1125)
+..+++..+.|+|||..+-.++..+.... ....-+.|-||... ...+..++...+. .... ..+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~-------- 72 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---RQTS-------- 72 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---TS-H--------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---cCCH--------
Confidence 44567889999999999888877665421 11112344455433 4444444433221 0000 1111
Q ss_pred HHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHcc--ccceEEEeecCC
Q 001197 501 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY--QIQRRLLLTGTP 568 (1125)
Q Consensus 501 ~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l--~s~~RLlLTGTP 568 (1125)
.+.+..-...+....-.+|||||+|++. .......+..+ .....++|+|||
T Consensus 73 ---------------~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 73 ---------------DELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp ---------------HHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred ---------------HHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 1111111233344444799999999983 24444555444 677889999999
No 184
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.65 E-value=0.026 Score=70.96 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=53.5
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcc-cHHHHHHHHHhh
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA-VLPNWINEFSTW 479 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~s-ll~qW~~Ef~k~ 479 (1125)
..|-+.|..+|...+. +....|+-.+.|+|||.++++++..+...+ .++||++|+. .+.+....+...
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g---~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKRG---LRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEEcCcHHHHHHHHHHHHhC
Confidence 5789999999988664 234568889999999999999888877643 3799999984 477777777663
No 185
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.59 E-value=0.013 Score=70.81 Aligned_cols=65 Identities=23% Similarity=0.337 Sum_probs=51.2
Q ss_pred CCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCccc-HHHHHHH
Q 001197 405 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV-LPNWINE 475 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sl-l~qW~~E 475 (1125)
+..|-+-|..++.+... +..=.|+-.+.|+|||.+..-+|..+...+ ..+||.+|+.+ +.|-..-
T Consensus 183 ~~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 183 NKNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred CccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHH
Confidence 34788999999987775 223347788999999999999999888764 57899999954 7777664
No 186
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.49 E-value=0.0019 Score=83.48 Aligned_cols=180 Identities=26% Similarity=0.320 Sum_probs=100.4
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCch--HHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCc
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLG--KTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSI 483 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLG--KTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~ 483 (1125)
..+.+||.....-...... ....++++.|+| ||+.+..+..+.... +.....++++|..+..+|..+...++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (866)
T COG0553 83 FILIPHQLDIALEVLNELA--LRVLIADEVGLGDLKTIEAGAILKELLLR-GEIKRVLILVPKTLRAQWVVELLEKFNIR 159 (866)
T ss_pred cccCcchhhhhhhhhhhhh--hchhhcccccccccccccccccchHhhhh-hhhccceeccchHHHHHHHHHhhhhcccc
Confidence 4667777766543333222 226889999999 899987776655443 33457899999999999999987764222
Q ss_pred eEEEEcC-ChhHHHHHHHHHHhhcCCccEEEecHHHHHHh----HHhhhccCe---eEEEEcCCcccCChh---------
Q 001197 484 AAVVYDG-RPDERKAMREEFFSERGRFNVLITHYDLIMRD----RQYLKKVQW---IYMIVDEGHRLKNHE--------- 546 (1125)
Q Consensus 484 ~vivy~G-~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd----~~~L~ki~w---~~VIIDEAHriKN~~--------- 546 (1125)
..++..+ .......... .........++...+..... ...+....| +++++||+|.+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (866)
T COG0553 160 LAVLDKEGLRYLLKQYDA--YNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLE 237 (866)
T ss_pred chhhhhhhhhhhhhhhcc--cccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccccccchh
Confidence 1111111 1111000000 00000011133333333332 223344456 899999999987742
Q ss_pred hHHHHHHHccc--------cceEEEeecCCCCCChHHHHHHhhccCCCCCCC
Q 001197 547 CALAKTISGYQ--------IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNS 590 (1125)
Q Consensus 547 SklskaL~~l~--------s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~s 590 (1125)
......+.... .-....+++||......++++..+++.+..+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 238 TLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred hhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 22233332221 113347899999988888877667776665554
No 187
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.32 E-value=0.027 Score=66.78 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=49.0
Q ss_pred ccCCCccCCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcC
Q 001197 397 TEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 465 (1125)
Q Consensus 397 ~~qP~~l~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP 465 (1125)
...|..++-...+|-|.+-..-+......+++|+|-.+.|+|||+.-++++.....+.+..-.-||-|.
T Consensus 6 d~l~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCS 74 (755)
T KOG1131|consen 6 DDLLVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCS 74 (755)
T ss_pred cCeeEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEec
Confidence 345555655678899977666666668889999999999999999999987655444433223355554
No 188
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.31 E-value=0.01 Score=62.02 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=56.3
Q ss_pred hhCCCEEEEEeccchHHHHHHHHHHhCC----CeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecc--ccccccCCC
Q 001197 730 RKSGHRVLLFSQMTRLMDILEIYLKLND----FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR--AGGLGLNLQ 803 (1125)
Q Consensus 730 ~~~g~KVLIFsq~t~~ldiLe~~L~~~g----i~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTr--AGG~GLNLq 803 (1125)
...+.++|||+++-..|+.+.+.+...+ +.+..- + ..++..+++.|..+... +|+++. ...+|||+.
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q-~---~~~~~~~l~~~~~~~~~---il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ-G---SKSRDELLEEFKRGEGA---ILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES-T---CCHHHHHHHHHCCSSSE---EEEEETTSCCGSSS--E
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec-C---cchHHHHHHHHHhccCe---EEEEEecccEEEeecCC
Confidence 4457899999999999999999987653 333322 2 44688999999996543 677777 899999999
Q ss_pred C--CCEEEEeCCCC
Q 001197 804 T--ADTVIIFDSDW 815 (1125)
Q Consensus 804 ~--Ad~VIi~D~~W 815 (1125)
+ |..||+.-.|+
T Consensus 79 ~~~~r~vii~glPf 92 (167)
T PF13307_consen 79 GDLLRAVIIVGLPF 92 (167)
T ss_dssp CESEEEEEEES---
T ss_pred CchhheeeecCCCC
Confidence 6 88999988886
No 189
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.24 E-value=0.011 Score=70.27 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=90.4
Q ss_pred hcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHH----hCCC----eEEEecCCCCHHHHHHHHHHHcCCCCCc
Q 001197 715 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLK----LNDF----KFLRLDGSTKTEERGTLLKQFNAPDSPY 786 (1125)
Q Consensus 715 ~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~----~~gi----~~~rLdGsts~~eR~~~I~~Fn~~ds~~ 786 (1125)
.+.|+.-..+++.++...|-|+|-||..+.+.+++....+ .-|- .+..+.|+-+.++|.++-.+.--+.-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L-- 584 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKL-- 584 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCee--
Confidence 3556667777888888899999999999987776543332 1111 23456788899999888766555443
Q ss_pred eEEEeeccccccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCC
Q 001197 787 FMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQ 832 (1125)
Q Consensus 787 ~VfLLSTrAGG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQ 832 (1125)
.-+++|.|..+||++-..|.|+++.-|.+-+.+.|..|||+|-..
T Consensus 585 -~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 585 -CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred -eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCC
Confidence 358999999999999999999999999999999999999999653
No 190
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.22 E-value=0.041 Score=59.04 Aligned_cols=124 Identities=21% Similarity=0.180 Sum_probs=65.5
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccH-HHHHHHHHhhCCCceE
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL-PNWINEFSTWAPSIAA 485 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll-~qW~~Ef~k~~p~~~v 485 (1125)
+|-+-|.+++..++.. ...-.+|....|+|||...-.+...+.. . ...+++++|+... .+-..... ..
T Consensus 1 ~L~~~Q~~a~~~~l~~--~~~~~~l~G~aGtGKT~~l~~~~~~~~~-~--g~~v~~~apT~~Aa~~L~~~~~-----~~- 69 (196)
T PF13604_consen 1 TLNEEQREAVRAILTS--GDRVSVLQGPAGTGKTTLLKALAEALEA-A--GKRVIGLAPTNKAAKELREKTG-----IE- 69 (196)
T ss_dssp -S-HHHHHHHHHHHHC--TCSEEEEEESTTSTHHHHHHHHHHHHHH-T--T--EEEEESSHHHHHHHHHHHT-----S--
T ss_pred CCCHHHHHHHHHHHhc--CCeEEEEEECCCCCHHHHHHHHHHHHHh-C--CCeEEEECCcHHHHHHHHHhhC-----cc-
Confidence 4788999999988751 2223567788999999865554444433 2 2578999998543 22222210 00
Q ss_pred EEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhh------hccCeeEEEEcCCcccCChhhHHHHHHHccc-c
Q 001197 486 VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL------KKVQWIYMIVDEGHRLKNHECALAKTISGYQ-I 558 (1125)
Q Consensus 486 ivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L------~ki~w~~VIIDEAHriKN~~SklskaL~~l~-s 558 (1125)
..|...+....... .....++||||||-.+-+. .+...+.... .
T Consensus 70 ---------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~--~~~~ll~~~~~~ 120 (196)
T PF13604_consen 70 ---------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSR--QLARLLRLAKKS 120 (196)
T ss_dssp ---------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHH--HHHHHHHHS-T-
T ss_pred ---------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccCHH--HHHHHHHHHHhc
Confidence 11111111100000 0224579999999987543 3444444443 3
Q ss_pred ceEEEeecCCCC
Q 001197 559 QRRLLLTGTPIQ 570 (1125)
Q Consensus 559 ~~RLlLTGTPlq 570 (1125)
..+++|.|-|-|
T Consensus 121 ~~klilvGD~~Q 132 (196)
T PF13604_consen 121 GAKLILVGDPNQ 132 (196)
T ss_dssp T-EEEEEE-TTS
T ss_pred CCEEEEECCcch
Confidence 679999999866
No 191
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.21 E-value=0.012 Score=68.74 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=52.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHH-HHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCC
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW-INEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGR 508 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW-~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~~~~~ 508 (1125)
|+-...|+|||+.++.++..+... ......+++|+...+.+. ...+..-. .. ..
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~~-~~~~~~~~l~~n~~l~~~l~~~l~~~~-------~~-----------------~~ 59 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQNS-EEGKKVLYLCGNHPLRNKLREQLAKKY-------NP-----------------KL 59 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhcc-ccCCceEEEEecchHHHHHHHHHhhhc-------cc-----------------ch
Confidence 566779999999999999888221 223456777777555443 33443322 00 11
Q ss_pred ccEEEecHHHHHHhHH--hhhccCeeEEEEcCCcccCC
Q 001197 509 FNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKN 544 (1125)
Q Consensus 509 fdVvITTYe~l~kd~~--~L~ki~w~~VIIDEAHriKN 544 (1125)
....+.....+++... ......+++|||||||++..
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 1122223333332221 22345799999999999976
No 192
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.10 E-value=0.026 Score=70.71 Aligned_cols=89 Identities=20% Similarity=0.294 Sum_probs=56.0
Q ss_pred CCEEEEEeccchHHHHHHHHHHhC-------CCeEEEecCCCCHHHHHHHHHHHcCC----CCC-ceEEEeecccccccc
Q 001197 733 GHRVLLFSQMTRLMDILEIYLKLN-------DFKFLRLDGSTKTEERGTLLKQFNAP----DSP-YFMFLLSTRAGGLGL 800 (1125)
Q Consensus 733 g~KVLIFsq~t~~ldiLe~~L~~~-------gi~~~rLdGsts~~eR~~~I~~Fn~~----ds~-~~VfLLSTrAGG~GL 800 (1125)
.+-+|||..+=.+||-+..++..+ +.+-+.+.= -+..+=.+++..|.+. +.. .-.|.++-...++||
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEP-r~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEP-RSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccCceecc-CCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 445999999988999887666543 222222211 1233334556666432 221 223557777889999
Q ss_pred CCCC--CCEEEEeCCCCChhhHHH
Q 001197 801 NLQT--ADTVIIFDSDWNPQMDQQ 822 (1125)
Q Consensus 801 NLq~--Ad~VIi~D~~WNP~~d~Q 822 (1125)
+... +..||+...|+=|..|.|
T Consensus 640 DFsD~~~RaVI~tGlPyP~~~D~~ 663 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPYPPVMDPR 663 (945)
T ss_pred CccccCCceeEEecCCCCCCCCHH
Confidence 9975 788999999887766654
No 193
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.10 E-value=0.05 Score=59.65 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=74.1
Q ss_pred CCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCC--
Q 001197 405 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPS-- 482 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~-- 482 (1125)
+..+||-|.+.+..|++. ..+.|.++-.-||-|||-..+=+++.++..+. .=+-+|||.+++.+-..-+...+.+
T Consensus 21 ~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~--~LvrviVpk~Ll~q~~~~L~~~lg~l~ 97 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGS--RLVRVIVPKALLEQMRQMLRSRLGGLL 97 (229)
T ss_pred CceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHHHHHHHHHHHh
Confidence 568999999999999874 45678899999999999888777777666532 3467889999999987777655422
Q ss_pred -ceEEEEcCC------hhHHHHHHHHHHhhcCCccEEEecHHHHHH
Q 001197 483 -IAAVVYDGR------PDERKAMREEFFSERGRFNVLITHYDLIMR 521 (1125)
Q Consensus 483 -~~vivy~G~------~~~R~~l~~~~~~~~~~fdVvITTYe~l~k 521 (1125)
-.+..+.-+ ...-..+..........-.|+|+|++.+..
T Consensus 98 ~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 98 NRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred CCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 223222211 111112222221111344599999987643
No 194
>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [].
Probab=96.07 E-value=0.023 Score=50.97 Aligned_cols=56 Identities=27% Similarity=0.430 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhh----hhhhhhHHHHHHHHHHHh
Q 001197 232 RKFFAEILNAVREFQVSIQASIKRRKQRNDGVQAWHGR----QRQRATRAEKLRFQALKA 287 (1125)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~r~~~~r~~~lk~ 287 (1125)
..+|++|+.++++|...+.......++..++|..||.. ++++.++.+++|+++|++
T Consensus 14 d~lL~e~~w~a~df~~e~k~k~~~a~k~a~~v~~~~~~~~~~~~k~~er~~k~Rlr~L~~ 73 (73)
T PF07529_consen 14 DHLLEEMLWMAKDFKEERKWKRARAKKLAKAVAQYHKNREKEEQKRIEREEKQRLRALKS 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhC
Confidence 34788999999999998887777778888999999985 356777899999999985
No 195
>smart00573 HSA domain in helicases and associated with SANT domains.
Probab=96.03 E-value=0.026 Score=51.08 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhh----hhhhhHHHHHHHHHHHh
Q 001197 233 KFFAEILNAVREFQVSIQASIKRRKQRNDGVQAWHGRQ----RQRATRAEKLRFQALKA 287 (1125)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~r~~~~r~~~lk~ 287 (1125)
.+|++++.|+++|......+.....+..++|..||.+. +++.++.++.|+++|++
T Consensus 15 ~lL~e~~w~~~df~e~~k~k~~~a~kla~~v~~~h~~~e~~e~r~~er~ek~Rl~~l~~ 73 (73)
T smart00573 15 HLLEEMIWHAKDFKEEHKWKIAAAKKMAKAVMDYHQNKEKEEERREEKNEKRRLRKLAA 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 47889999999999988777777777889999999863 45668999999999974
No 196
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.98 E-value=0.082 Score=51.55 Aligned_cols=41 Identities=15% Similarity=0.103 Sum_probs=26.5
Q ss_pred CeeEEEEcCCcccCC-hhhHHHHHHHcc------ccceEEEeecCCCC
Q 001197 530 QWIYMIVDEGHRLKN-HECALAKTISGY------QIQRRLLLTGTPIQ 570 (1125)
Q Consensus 530 ~w~~VIIDEAHriKN-~~SklskaL~~l------~s~~RLlLTGTPlq 570 (1125)
...++|+||+|++.. ....+...+..+ .....+++|+++..
T Consensus 84 ~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 84 KPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 567999999999833 223444555444 24667788887754
No 197
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.48 E-value=0.076 Score=66.21 Aligned_cols=140 Identities=15% Similarity=0.139 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCC--CCCEEEEcCccc-HHHHHHHHHhhCCCceEE
Q 001197 410 AYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV--TGPHVIVAPKAV-LPNWINEFSTWAPSIAAV 486 (1125)
Q Consensus 410 pYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~--~gp~LIVvP~sl-l~qW~~Ef~k~~p~~~vi 486 (1125)
+.|..++...+. +.-.||....|+|||.++..++..+....+. ...+++++|+.- .....+-+......+..
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~- 222 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA- 222 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc-
Confidence 789999877765 4567889999999999988888777654322 135888999844 33344333332211110
Q ss_pred EEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH--------HhhhccCeeEEEEcCCcccCChhhHHHHHHHcccc
Q 001197 487 VYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--------QYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQI 558 (1125)
Q Consensus 487 vy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~--------~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l~s 558 (1125)
...... ...+-..|...+.... ..-....+++||||||-.+-.. .+...+..++.
T Consensus 223 ----~~~~~~-----------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~--l~~~ll~al~~ 285 (586)
T TIGR01447 223 ----AEALIA-----------ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLP--LMAKLLKALPP 285 (586)
T ss_pred ----chhhhh-----------ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCHH--HHHHHHHhcCC
Confidence 000000 0001111211111100 0011236899999999887543 45555677778
Q ss_pred ceEEEeecCCCCC
Q 001197 559 QRRLLLTGTPIQN 571 (1125)
Q Consensus 559 ~~RLlLTGTPlqN 571 (1125)
..+++|.|-|-|-
T Consensus 286 ~~rlIlvGD~~QL 298 (586)
T TIGR01447 286 NTKLILLGDKNQL 298 (586)
T ss_pred CCEEEEECChhhC
Confidence 8899999988664
No 198
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.29 E-value=0.062 Score=60.15 Aligned_cols=27 Identities=30% Similarity=0.239 Sum_probs=21.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 427 LNGILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 427 ~~GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
.+.||..+.|+|||..|-++...+...
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 455899999999999998887776553
No 199
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.18 E-value=0.16 Score=64.08 Aligned_cols=53 Identities=25% Similarity=0.244 Sum_probs=36.3
Q ss_pred cCeeEEEEcCCcccCChh-hHHHHHHHccccceEEEeecCCCCCChHHHHHHhh
Q 001197 529 VQWIYMIVDEGHRLKNHE-CALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLN 581 (1125)
Q Consensus 529 i~w~~VIIDEAHriKN~~-SklskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~ 581 (1125)
-+|.++||||+|.|.+.. ..+.+.|.......+++|+.|-.+.-+.-+.|-+.
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq 171 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCL 171 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheE
Confidence 378999999999996533 34555566666677888888865555555555443
No 200
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.08 E-value=0.14 Score=62.09 Aligned_cols=42 Identities=19% Similarity=0.090 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhccCC-C--eEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 412 QLEGLQWMLSLFNNNL-N--GILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 412 Q~egv~wml~l~~~~~-~--GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
|...+..+.....++. + -|+..+.|+|||..|..++..+...
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4444444444333333 2 3889999999999999888877543
No 201
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.08 E-value=0.084 Score=66.93 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=89.3
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCCceE
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAA 485 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~~~v 485 (1125)
.|-.-|.+|+-..+.. ..+--|++. .|+|||-+...+|..|...+ +.+|+.+=+ +.+.|-.--+..+.-.
T Consensus 669 ~LN~dQr~A~~k~L~a--edy~LI~GM-PGTGKTTtI~~LIkiL~~~g---kkVLLtsyThsAVDNILiKL~~~~i~--- 739 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAA--EDYALILGM-PGTGKTTTISLLIKILVALG---KKVLLTSYTHSAVDNILIKLKGFGIY--- 739 (1100)
T ss_pred hcCHHHHHHHHHHHhc--cchheeecC-CCCCchhhHHHHHHHHHHcC---CeEEEEehhhHHHHHHHHHHhccCcc---
Confidence 6778899988655542 233335555 89999988888888777653 467888866 7788887777665421
Q ss_pred EEEcCChhHHHHHHHHH--------------HhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHH
Q 001197 486 VVYDGRPDERKAMREEF--------------FSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAK 551 (1125)
Q Consensus 486 ivy~G~~~~R~~l~~~~--------------~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~Sklsk 551 (1125)
++--|+...-.....++ ....+...||.+|.--+. ...|...+|||+|||||-.|--+ -
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~lP-----~ 812 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILLP-----L 812 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEccccccccc-----h
Confidence 22223322211111111 111244556666644332 34566668999999999877443 2
Q ss_pred HHHccccceEEEeecCCCC
Q 001197 552 TISGYQIQRRLLLTGTPIQ 570 (1125)
Q Consensus 552 aL~~l~s~~RLlLTGTPlq 570 (1125)
.|--+.-..++.|-|-+.|
T Consensus 813 ~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 813 CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred hhhhhhhcceEEEeccccc
Confidence 2333445667788887655
No 202
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.91 E-value=0.18 Score=64.64 Aligned_cols=135 Identities=21% Similarity=0.183 Sum_probs=80.7
Q ss_pred CCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCce
Q 001197 405 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA 484 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~ 484 (1125)
+..|.+-|.+++..+.. +.-.||....|+|||.++-+++..+.... ...++++++|+........+..- ..
T Consensus 321 ~~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~~~-~~~~v~l~ApTg~AA~~L~e~~g----~~ 391 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEELG-GLLPVGLAAPTGRAAKRLGEVTG----LT 391 (720)
T ss_pred CCCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHHcC-CCceEEEEeCchHHHHHHHHhcC----Cc
Confidence 45799999999987753 44678999999999988766666554432 12467888898665554433210 00
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHccccceEEEe
Q 001197 485 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLL 564 (1125)
Q Consensus 485 vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l~s~~RLlL 564 (1125)
. .. + ..+....... . ...... .....++||||||+.+-.. .+...+..++...+++|
T Consensus 392 a-------~T---i-h~lL~~~~~~--~------~~~~~~--~~~~~~llIvDEaSMvd~~--~~~~Ll~~~~~~~rlil 448 (720)
T TIGR01448 392 A-------ST---I-HRLLGYGPDT--F------RHNHLE--DPIDCDLLIVDESSMMDTW--LALSLLAALPDHARLLL 448 (720)
T ss_pred c-------cc---H-HHHhhccCCc--c------chhhhh--ccccCCEEEEeccccCCHH--HHHHHHHhCCCCCEEEE
Confidence 0 00 0 0011000000 0 000000 1246789999999998543 34455577778889999
Q ss_pred ecCCCCC
Q 001197 565 TGTPIQN 571 (1125)
Q Consensus 565 TGTPlqN 571 (1125)
-|=|-|-
T Consensus 449 vGD~~QL 455 (720)
T TIGR01448 449 VGDTDQL 455 (720)
T ss_pred ECccccc
Confidence 9988664
No 203
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.84 E-value=0.13 Score=49.49 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=29.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHH
Q 001197 427 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 472 (1125)
Q Consensus 427 ~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW 472 (1125)
...+|..++|+|||..+..++..+.... ..++++.+......|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~ 45 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEV 45 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccC
Confidence 4557899999999999888876654432 356777766554443
No 204
>PRK04296 thymidine kinase; Provisional
Probab=94.55 E-value=0.13 Score=54.87 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=25.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcC
Q 001197 429 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 465 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP 465 (1125)
.++..+||.|||..++.++..+... ..+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 3678899999999998888766553 235676655
No 205
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.45 E-value=0.22 Score=62.47 Aligned_cols=142 Identities=15% Similarity=0.156 Sum_probs=80.7
Q ss_pred ccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccC-CCCCEEEEcCcccHHH-HHHHHHhhCCCceE
Q 001197 408 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPKAVLPN-WINEFSTWAPSIAA 485 (1125)
Q Consensus 408 LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~-~~gp~LIVvP~sll~q-W~~Ef~k~~p~~~v 485 (1125)
.-+.|+.++.-.+. +.-.||....|+|||.+...++..+..... ....+++++|+.-... -.+.+..-...+..
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 35899999976654 455788999999999998888877765422 2235778889854332 22222221111100
Q ss_pred EEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhH--------HhhhccCeeEEEEcCCcccCChhhHHHHHHHccc
Q 001197 486 VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--------QYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 557 (1125)
Q Consensus 486 ivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~--------~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l~ 557 (1125)
....+. ....-..|...+.... ..-....+++|||||+..+-. ..+...+..++
T Consensus 229 -----~~~~~~-----------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~--~lm~~ll~al~ 290 (615)
T PRK10875 229 -----TDEQKK-----------RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDL--PMMARLIDALP 290 (615)
T ss_pred -----chhhhh-----------cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcccH--HHHHHHHHhcc
Confidence 000000 0000111111111100 011224678999999998743 24455567788
Q ss_pred cceEEEeecCCCCC
Q 001197 558 IQRRLLLTGTPIQN 571 (1125)
Q Consensus 558 s~~RLlLTGTPlqN 571 (1125)
...|++|-|-|-|-
T Consensus 291 ~~~rlIlvGD~~QL 304 (615)
T PRK10875 291 PHARVIFLGDRDQL 304 (615)
T ss_pred cCCEEEEecchhhc
Confidence 88999999988664
No 206
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.44 E-value=0.38 Score=56.48 Aligned_cols=144 Identities=17% Similarity=0.310 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhhccCCC---eEEEcCCCchHHHHHHHHHHHHHHccC-CCCCEEEEcCcccHHHHHHHHHhhCCCceEEE
Q 001197 412 QLEGLQWMLSLFNNNLN---GILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVV 487 (1125)
Q Consensus 412 Q~egv~wml~l~~~~~~---GILADEMGLGKTiqaIali~~L~e~~~-~~gp~LIVvP~sll~qW~~Ef~k~~p~~~viv 487 (1125)
|.+++..+...+..+.. -++..+.|+|||..+..++..+..... ..+|.-+..|......+..-...-.|++..+.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~ 107 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHIT 107 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEee
Confidence 45556667766655542 467999999999999999988876321 11222222232222222211122235544332
Q ss_pred EcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhh----ccCeeEEEEcCCcccCCh-hhHHHHHHHccccceE-
Q 001197 488 YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKNH-ECALAKTISGYQIQRR- 561 (1125)
Q Consensus 488 y~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~----ki~w~~VIIDEAHriKN~-~SklskaL~~l~s~~R- 561 (1125)
....... +++.- .++.+.+..-..++. .-.|.+|||||+|.|-.. ...+-+.+...+....
T Consensus 108 ~~~~~~~------------~~~~~-~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 108 RPFDEKT------------GKFKT-AITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred ccccccc------------ccccc-cCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 1110000 00100 112333433333333 237999999999999432 1235555555444444
Q ss_pred EEeecCC
Q 001197 562 LLLTGTP 568 (1125)
Q Consensus 562 LlLTGTP 568 (1125)
+++|..|
T Consensus 175 iLit~~~ 181 (351)
T PRK09112 175 ILISHSS 181 (351)
T ss_pred EEEECCh
Confidence 4455444
No 207
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.17 E-value=0.54 Score=60.92 Aligned_cols=113 Identities=18% Similarity=0.185 Sum_probs=58.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCC-CCCEEEEcCcccHHHHHHHHHhh-CCCceEEEEcCChh-HHHHHHHHHHhhc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVAPKAVLPNWINEFSTW-APSIAAVVYDGRPD-ERKAMREEFFSER 506 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~-~gp~LIVvP~sll~qW~~Ef~k~-~p~~~vivy~G~~~-~R~~l~~~~~~~~ 506 (1125)
||....|+|||..+..++..|....+. ..| +=.|+. +..+..- ..+..++.+.+... ....++..
T Consensus 41 Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~p-Cg~C~s------C~~~~~g~~~~~dv~eidaas~~~Vd~iR~l----- 108 (824)
T PRK07764 41 LFSGPRGCGKTSSARILARSLNCVEGPTSTP-CGECDS------CVALAPGGPGSLDVTEIDAASHGGVDDAREL----- 108 (824)
T ss_pred EEECCCCCCHHHHHHHHHHHhCcccCCCCCC-CcccHH------HHHHHcCCCCCCcEEEecccccCCHHHHHHH-----
Confidence 789999999999999998888754321 112 223433 1111111 12344444444211 11111110
Q ss_pred CCccEEEecHHHHHHhHHh-hhccCeeEEEEcCCcccCChh-hHHHHHHHccccceEEEeecC
Q 001197 507 GRFNVLITHYDLIMRDRQY-LKKVQWIYMIVDEGHRLKNHE-CALAKTISGYQIQRRLLLTGT 567 (1125)
Q Consensus 507 ~~fdVvITTYe~l~kd~~~-L~ki~w~~VIIDEAHriKN~~-SklskaL~~l~s~~RLlLTGT 567 (1125)
.....+ -..-+|.++||||+|+|.... ..+.+.|......-+++|+.|
T Consensus 109 -------------~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 109 -------------RERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred -------------HHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 000000 112378999999999996432 234555555555556666544
No 208
>PLN03025 replication factor C subunit; Provisional
Probab=94.14 E-value=0.32 Score=56.11 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=33.8
Q ss_pred CeeEEEEcCCcccCCh-hhHHHHHHHccccceEEEeecCCCCCChHHHHHHh
Q 001197 530 QWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLL 580 (1125)
Q Consensus 530 ~w~~VIIDEAHriKN~-~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL 580 (1125)
.|.+|||||+|.+... ...+.+.+..+....+++|++++...-+..|-+-+
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 5899999999999542 23444555555666778888876555445555443
No 209
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.03 E-value=0.29 Score=62.95 Aligned_cols=117 Identities=23% Similarity=0.232 Sum_probs=60.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceEEEEcCCh-hHHHHHHHHHHhhcCC
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRP-DERKAMREEFFSERGR 508 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vivy~G~~-~~R~~l~~~~~~~~~~ 508 (1125)
|+..+.|+|||..+-.++..+.......+..+-+|+.. .++.... ...++.+.+.. .....++...
T Consensus 42 LFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC------~~i~~g~-~~DviEidAas~~kVDdIReLi------ 108 (944)
T PRK14949 42 LFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC------VEIAQGR-FVDLIEVDAASRTKVDDTRELL------ 108 (944)
T ss_pred EEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH------HHHhcCC-CceEEEeccccccCHHHHHHHH------
Confidence 78999999999999998888765422222222333321 1222111 12223333321 1111111111
Q ss_pred ccEEEecHHHHHHhHHh-hhccCeeEEEEcCCcccCC-hhhHHHHHHHccccceEEEeecCCCCC
Q 001197 509 FNVLITHYDLIMRDRQY-LKKVQWIYMIVDEGHRLKN-HECALAKTISGYQIQRRLLLTGTPIQN 571 (1125)
Q Consensus 509 fdVvITTYe~l~kd~~~-L~ki~w~~VIIDEAHriKN-~~SklskaL~~l~s~~RLlLTGTPlqN 571 (1125)
....+ -..-+|.++||||+|+|.. ....+-+.|...+...+++|..|-...
T Consensus 109 ------------e~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~k 161 (944)
T PRK14949 109 ------------DNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQK 161 (944)
T ss_pred ------------HHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchh
Confidence 00000 0124789999999999953 223455555555667778887554433
No 210
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.65 E-value=0.59 Score=58.50 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.7
Q ss_pred EEEcCCCchHHHHHHHHHHHHHH
Q 001197 430 ILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e 452 (1125)
||..+.|+|||..+..++..+..
T Consensus 42 LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 42 LFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 78999999999999999888865
No 211
>CHL00181 cbbX CbbX; Provisional
Probab=93.64 E-value=0.21 Score=57.02 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=27.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHccCC-CCCEEEEc
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVA 464 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e~~~~-~gp~LIVv 464 (1125)
+.+.+|..+.|+|||..|-+++..+...+.. .++++.|.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~ 98 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT 98 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec
Confidence 3446889999999999999888776654332 23444443
No 212
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.42 E-value=0.21 Score=56.89 Aligned_cols=39 Identities=26% Similarity=0.242 Sum_probs=27.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHccCC-CCCEEEEc
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVA 464 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e~~~~-~gp~LIVv 464 (1125)
+.+.+|..+.|+|||..|.++...+...... .++++.|.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 3456889999999999998887777654332 23555444
No 213
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=93.27 E-value=0.2 Score=65.14 Aligned_cols=110 Identities=23% Similarity=0.236 Sum_probs=78.0
Q ss_pred hhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccH-----HHHHHHHHhhCCCceEEEEcCChhHHH
Q 001197 422 LFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL-----PNWINEFSTWAPSIAAVVYDGRPDERK 496 (1125)
Q Consensus 422 l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll-----~qW~~Ef~k~~p~~~vivy~G~~~~R~ 496 (1125)
.|+.+.+.+++...|+|||++|=-++.. ....+.++-|+|...+ ..|..-|.+. .+..++...|....-.
T Consensus 1155 ~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~l 1229 (1674)
T KOG0951|consen 1155 LYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDL 1229 (1674)
T ss_pred eecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccch
Confidence 4566778899999999999887333222 4456788999998554 4588888887 5677777777655433
Q ss_pred HHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChh
Q 001197 497 AMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHE 546 (1125)
Q Consensus 497 ~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~ 546 (1125)
.+. ..-+|+|.|++.+..-. .. -.-++.|+||.|.+....
T Consensus 1230 kl~-------~~~~vii~tpe~~d~lq-~i--Q~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1230 KLL-------QKGQVIISTPEQWDLLQ-SI--QQVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred HHh-------hhcceEEechhHHHHHh-hh--hhcceEeeehhhhhcccC
Confidence 332 35689999999875542 22 256789999999997643
No 214
>PRK06526 transposase; Provisional
Probab=93.05 E-value=0.27 Score=55.06 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=61.2
Q ss_pred HHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceEEEEcCChhH
Q 001197 415 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDE 494 (1125)
Q Consensus 415 gv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vivy~G~~~~ 494 (1125)
+..|+- .+.|.+|..+.|+|||..+.++...+...+ .+++++ ....|..++..... .|
T Consensus 91 ~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~----t~~~l~~~l~~~~~-------~~---- 148 (254)
T PRK06526 91 TLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFA----TAAQWVARLAAAHH-------AG---- 148 (254)
T ss_pred cCchhh----cCceEEEEeCCCCchHHHHHHHHHHHHHCC---Cchhhh----hHHHHHHHHHHHHh-------cC----
Confidence 445553 466778999999999999999987776542 233333 23456555543210 01
Q ss_pred HHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChh---hHHHHHH-HccccceEEEeecCC
Q 001197 495 RKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHE---CALAKTI-SGYQIQRRLLLTGTP 568 (1125)
Q Consensus 495 R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~---SklskaL-~~l~s~~RLlLTGTP 568 (1125)
++.... ..+ .++++|||||.|.+.... ..++..+ ..+.....++.|..|
T Consensus 149 --------------------~~~~~l---~~l--~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 149 --------------------RLQAEL---VKL--GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred --------------------cHHHHH---HHh--ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 011011 112 257899999999885422 2355555 334444555556555
No 215
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.70 E-value=0.13 Score=62.25 Aligned_cols=105 Identities=18% Similarity=0.216 Sum_probs=57.3
Q ss_pred cCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHh-----hCCCceEEEEcCChhHHHHHHHHHHhhc
Q 001197 433 DEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFST-----WAPSIAAVVYDGRPDERKAMREEFFSER 506 (1125)
Q Consensus 433 DEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k-----~~p~~~vivy~G~~~~R~~l~~~~~~~~ 506 (1125)
+.+|+|||+++.++|.+++..+ ...+|+.|-. +++.--...|.. +.- ..++.|.|..-.-+.+. .+-...
T Consensus 4 matgsgkt~~ma~lil~~y~kg--yr~flffvnq~nilekt~~nftd~~s~kylf-~e~i~~~d~~i~ikkvn-~fsehn 79 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKKG--YRNFLFFVNQANILEKTKLNFTDSVSSKYLF-SENININDENIEIKKVN-NFSEHN 79 (812)
T ss_pred cccCCChhhHHHHHHHHHHHhc--hhhEEEEecchhHHHHHHhhcccchhhhHhh-hhhhhcCCceeeeeeec-ccCccC
Confidence 5689999999999999998864 3457777654 666544333321 110 11122222211111110 010112
Q ss_pred CCccEEEecHHHHHHhHHh----------hhccCeeEEEEcCCccc
Q 001197 507 GRFNVLITHYDLIMRDRQY----------LKKVQWIYMIVDEGHRL 542 (1125)
Q Consensus 507 ~~fdVvITTYe~l~kd~~~----------L~ki~w~~VIIDEAHri 542 (1125)
....|+.||...+..+... |... --+++-||||++
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~-klvfl~deahhl 124 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQ-KLVFLADEAHHL 124 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhC-ceEEEechhhhh
Confidence 4556888998877655321 2222 236778999999
No 216
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.68 E-value=1.1 Score=49.89 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHhhccCC-CeEEEcCCCchHHHHHHHHHHH
Q 001197 409 RAYQLEGLQWMLSLFNNNL-NGILADEMGLGKTIQTIALIAY 449 (1125)
Q Consensus 409 rpYQ~egv~wml~l~~~~~-~GILADEMGLGKTiqaIali~~ 449 (1125)
-+.+..++..+......+. ..+|..+.|+|||..+-.++..
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 3445556665554443333 3578999999999877666543
No 217
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=92.68 E-value=0.48 Score=54.99 Aligned_cols=69 Identities=17% Similarity=0.091 Sum_probs=42.6
Q ss_pred CCCccCCCCccH-HHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccH
Q 001197 399 QPTLLQGGELRA-YQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL 469 (1125)
Q Consensus 399 qP~~l~g~~Lrp-YQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll 469 (1125)
.+...+|...|. +|.-++.-++. .. -.=..|...-|+|||+-|+|...+-....+....++|-=|..-+
T Consensus 219 ~~~~vwGi~prn~eQ~~ALdlLld-~d-I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpv 288 (436)
T COG1875 219 EDQEVWGIRPRNAEQRVALDLLLD-DD-IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPV 288 (436)
T ss_pred CchhhhccCcccHHHHHHHHHhcC-CC-CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCc
Confidence 444556666554 77777765553 11 11235778899999999988776655444555565555565433
No 218
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.58 E-value=0.4 Score=55.17 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=27.0
Q ss_pred HHHHHHHhhccCC--CeEEEcCCCchHHHHHHHHHHHHHH
Q 001197 415 GLQWMLSLFNNNL--NGILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 415 gv~wml~l~~~~~--~GILADEMGLGKTiqaIali~~L~e 452 (1125)
.+.++.....++. +.++..+.|+|||..+.+++..+..
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3444444444443 5688999999999999998877754
No 219
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.42 E-value=1.4 Score=55.39 Aligned_cols=40 Identities=28% Similarity=0.314 Sum_probs=26.4
Q ss_pred CeeEEEEcCCcccCCh-hhHHHHHHHccccceEEEeecCCC
Q 001197 530 QWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGTPI 569 (1125)
Q Consensus 530 ~w~~VIIDEAHriKN~-~SklskaL~~l~s~~RLlLTGTPl 569 (1125)
++.++||||+|+|... ...+.+.|......-+++|+.|-.
T Consensus 118 k~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 6889999999998532 233455555545555677776643
No 220
>PRK08181 transposase; Validated
Probab=92.27 E-value=0.99 Score=51.07 Aligned_cols=46 Identities=24% Similarity=0.138 Sum_probs=33.0
Q ss_pred ccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 408 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 408 LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
+-+-|..++.++-.....+.|.+|..+.|+|||-.+.++...+...
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN 133 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 3445666664443333457778999999999999999988777664
No 221
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.09 E-value=2.2 Score=53.91 Aligned_cols=122 Identities=24% Similarity=0.249 Sum_probs=61.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCC-CCEEEEcCcccHHHHHHHHHh-hCCCceEEEEcCCh-hHHHHHHHHHHhhc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIVAPKAVLPNWINEFST-WAPSIAAVVYDGRP-DERKAMREEFFSER 506 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~-gp~LIVvP~sll~qW~~Ef~k-~~p~~~vivy~G~~-~~R~~l~~~~~~~~ 506 (1125)
|+..+.|+|||..+..++..+....+.. .|+ -.| ..+.+|.. -+|++ +.+.+.. .....++..
T Consensus 42 Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pC-g~C------~~C~~i~~g~~~D~--ieidaas~~~VddiR~l----- 107 (647)
T PRK07994 42 LFSGTRGVGKTTIARLLAKGLNCETGITATPC-GEC------DNCREIEQGRFVDL--IEIDAASRTKVEDTREL----- 107 (647)
T ss_pred EEECCCCCCHHHHHHHHHHhhhhccCCCCCCC-CCC------HHHHHHHcCCCCCc--eeecccccCCHHHHHHH-----
Confidence 7899999999999999988877643211 121 112 12223321 12222 2233321 111111110
Q ss_pred CCccEEEecHHHHHHhHHh-hhccCeeEEEEcCCcccCCh-hhHHHHHHHccccceEEEeecCCCCCChHHHHH
Q 001197 507 GRFNVLITHYDLIMRDRQY-LKKVQWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 578 (1125)
Q Consensus 507 ~~fdVvITTYe~l~kd~~~-L~ki~w~~VIIDEAHriKN~-~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~s 578 (1125)
.....+ -..-+|.++||||+|+|... ...+-+.|...+..-+++|+.|-.+.-+.-+.+
T Consensus 108 -------------i~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~S 168 (647)
T PRK07994 108 -------------LDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 (647)
T ss_pred -------------HHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHh
Confidence 000000 01237889999999999642 223445555555566777775544433333443
No 222
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=92.03 E-value=1.8 Score=52.13 Aligned_cols=125 Identities=21% Similarity=0.277 Sum_probs=93.0
Q ss_pred chHHHHHH-HhHHhh--hCCCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeec
Q 001197 717 GKFELLDR-LLPKLR--KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 793 (1125)
Q Consensus 717 ~Kle~L~~-lL~kl~--~~g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLST 793 (1125)
.+++.... +|+.+. ....++|||.++=-..-.|..+|...++.|+.++--++..+-..+-..|..+..+ ++|.|-
T Consensus 281 ~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~--iLL~TE 358 (442)
T PF06862_consen 281 ARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKP--ILLYTE 358 (442)
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCce--EEEEEh
Confidence 45555544 778877 3456899998875555568899999999999999999999999999999998754 677776
Q ss_pred cc-cccccCCCCCCEEEEeCCCCChhhHHHHHhhhcccCC----CCcEEEEEEEe
Q 001197 794 RA-GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQ----KKEVRVFVLVS 843 (1125)
Q Consensus 794 rA-GG~GLNLq~Ad~VIi~D~~WNP~~d~QAigRahRIGQ----kk~V~VyrLIt 843 (1125)
|+ .=.=..+.++.+||+|.||-+|+-|..-+.-...-.+ ..++.|.-|.+
T Consensus 359 R~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lys 413 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYS 413 (442)
T ss_pred HHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEec
Confidence 65 2234567789999999999999999887765544333 23344444444
No 223
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=91.90 E-value=1.4 Score=51.40 Aligned_cols=147 Identities=15% Similarity=0.084 Sum_probs=76.7
Q ss_pred CccHHHHHHHHHHHHhhccCCCe-EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceE
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAA 485 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~G-ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~v 485 (1125)
.++|+|....+-++.. +.-.++ ++..+.|+|||..|.+++..+....+..+. |-........-...-.|++..
T Consensus 3 ~~yPWl~~~~~~~~~~-~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~-----~Cg~C~sC~~~~~g~HPD~~~ 76 (328)
T PRK05707 3 EIYPWQQSLWQQLAGR-GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGG-----ACGSCKGCQLLRAGSHPDNFV 76 (328)
T ss_pred cCCCCcHHHHHHHHHC-CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCC-----CCCCCHHHHHHhcCCCCCEEE
Confidence 3589999998888875 222334 568999999999999999988764322111 111111111111112244433
Q ss_pred EEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhh----ccCeeEEEEcCCcccCCh-hhHHHHHHHccccce
Q 001197 486 VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKNH-ECALAKTISGYQIQR 560 (1125)
Q Consensus 486 ivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~----ki~w~~VIIDEAHriKN~-~SklskaL~~l~s~~ 560 (1125)
+.-.+.... ++-+.++.-...+. .-.+.++|||+||+|... ...+-+.+..-+...
T Consensus 77 i~~~~~~~~-------------------i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~ 137 (328)
T PRK05707 77 LEPEEADKT-------------------IKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDT 137 (328)
T ss_pred EeccCCCCC-------------------CCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCe
Confidence 322211100 01122221111111 236889999999999542 234555665555555
Q ss_pred EEEeecCCCCCChHHHHH
Q 001197 561 RLLLTGTPIQNSLQELWS 578 (1125)
Q Consensus 561 RLlLTGTPlqN~l~EL~s 578 (1125)
.++|+.+-...-+.-+.|
T Consensus 138 ~fiL~t~~~~~ll~TI~S 155 (328)
T PRK05707 138 VLLLISHQPSRLLPTIKS 155 (328)
T ss_pred EEEEEECChhhCcHHHHh
Confidence 666665543333444444
No 224
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.87 E-value=1.6 Score=45.44 Aligned_cols=141 Identities=17% Similarity=0.208 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhhccC--CCe-EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHh-hCCCceEEE
Q 001197 412 QLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST-WAPSIAAVV 487 (1125)
Q Consensus 412 Q~egv~wml~l~~~~--~~G-ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k-~~p~~~viv 487 (1125)
|.+.+..+...+.++ .+. |+..+.|.||+-.|.+++..++....... .|-. .. ....+.. -.|++.++
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~----~c~~--c~-~c~~~~~~~~~d~~~~- 73 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED----PCGE--CR-SCRRIEEGNHPDFIII- 73 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT------SS--SH-HHHHHHTT-CTTEEEE-
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCC--CH-HHHHHHhccCcceEEE-
Confidence 455566666655444 233 78899999999999999998877543332 1111 11 1112222 22333333
Q ss_pred EcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhh----ccCeeEEEEcCCcccCC-hhhHHHHHHHccccceEE
Q 001197 488 YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGYQIQRRL 562 (1125)
Q Consensus 488 y~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~----ki~w~~VIIDEAHriKN-~~SklskaL~~l~s~~RL 562 (1125)
......+ . ..-+.+..-...+. ...+.++|||+||.|.. ....+-+.|...+..-++
T Consensus 74 -~~~~~~~--------------~---i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f 135 (162)
T PF13177_consen 74 -KPDKKKK--------------S---IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF 135 (162)
T ss_dssp -ETTTSSS--------------S---BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred -ecccccc--------------h---hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence 2211100 0 01122222112111 13688999999999854 344677777777888888
Q ss_pred EeecCCCCCChHHHHH
Q 001197 563 LLTGTPIQNSLQELWS 578 (1125)
Q Consensus 563 lLTGTPlqN~l~EL~s 578 (1125)
+|+.+-..+-+.-+.|
T Consensus 136 iL~t~~~~~il~TI~S 151 (162)
T PF13177_consen 136 ILITNNPSKILPTIRS 151 (162)
T ss_dssp EEEES-GGGS-HHHHT
T ss_pred EEEECChHHChHHHHh
Confidence 8888765554444443
No 225
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.87 E-value=1.9 Score=51.32 Aligned_cols=130 Identities=14% Similarity=0.120 Sum_probs=71.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHccC-CCCCEEEEcCcc--cHHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHh
Q 001197 428 NGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPKA--VLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS 504 (1125)
Q Consensus 428 ~GILADEMGLGKTiqaIali~~L~e~~~-~~gp~LIVvP~s--ll~qW~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~ 504 (1125)
..++...+|.|||.++.-++.++..... ...++.+|+=.. .-..|+ +..|+..+.+-+
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv----------------- 236 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPV----------------- 236 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcce-----------------
Confidence 3467899999999998777776654321 223444444221 111222 444442111111
Q ss_pred hcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChh---hHHHHHHHccc--cceEEEeecCCCCCChHHHHHH
Q 001197 505 ERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHE---CALAKTISGYQ--IQRRLLLTGTPIQNSLQELWSL 579 (1125)
Q Consensus 505 ~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~---SklskaL~~l~--s~~RLlLTGTPlqN~l~EL~sL 579 (1125)
.++-++..+......+ .+.++||||++.+..... ..+...+.... ....|.|++|--++.+.+.+.-
T Consensus 237 ------~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~ 308 (388)
T PRK12723 237 ------KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQ 308 (388)
T ss_pred ------EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHH
Confidence 1222333333322223 368899999999985432 23334444332 2567899999888888877776
Q ss_pred hhccC
Q 001197 580 LNFLL 584 (1125)
Q Consensus 580 L~fL~ 584 (1125)
+..+.
T Consensus 309 ~~~~~ 313 (388)
T PRK12723 309 FSPFS 313 (388)
T ss_pred hcCCC
Confidence 65443
No 226
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.79 E-value=1.6 Score=50.96 Aligned_cols=44 Identities=30% Similarity=0.244 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHHhh-c--cCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 001197 409 RAYQLEGLQWMLSLF-N--NNLNGILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 409 rpYQ~egv~wml~l~-~--~~~~GILADEMGLGKTiqaIali~~L~e 452 (1125)
|+.|++.+...+... . ...+.+|..+.|+|||..+-+++..+.+
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 788887776555432 2 1245688999999999998888877654
No 227
>PRK06835 DNA replication protein DnaC; Validated
Probab=91.29 E-value=1.7 Score=50.64 Aligned_cols=48 Identities=23% Similarity=0.186 Sum_probs=34.9
Q ss_pred CCccHHHHHHHHHHHHhh----ccCCCeEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 406 GELRAYQLEGLQWMLSLF----NNNLNGILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~----~~~~~GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
+..+.+...++.++.... ..+.+-+|..++|+|||..+.|++..+...
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 466777777776554322 234556789999999999999998888764
No 228
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.24 E-value=2.4 Score=52.30 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=30.5
Q ss_pred cCeeEEEEcCCcccCCh-hhHHHHHHHccccceEEEeecCCCCCChHHHHH
Q 001197 529 VQWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 578 (1125)
Q Consensus 529 i~w~~VIIDEAHriKN~-~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~s 578 (1125)
-+|.++||||+|.|... ...+-+.+...+..-+++|+.|-.+.-+.-+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~S 168 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLS 168 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHH
Confidence 37899999999999642 223445555555566666666644444433433
No 229
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=91.22 E-value=1.6 Score=49.97 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=27.6
Q ss_pred CeeEEEEcCCcccCChh--hHHHHHHHccccceEEEeecCCCC
Q 001197 530 QWIYMIVDEGHRLKNHE--CALAKTISGYQIQRRLLLTGTPIQ 570 (1125)
Q Consensus 530 ~w~~VIIDEAHriKN~~--SklskaL~~l~s~~RLlLTGTPlq 570 (1125)
...+|||||+|.+.... ..+...+..+....++++|++...
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 46799999999983322 234444556667778888887544
No 230
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.10 E-value=44 Score=43.34 Aligned_cols=27 Identities=33% Similarity=0.372 Sum_probs=22.1
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e 452 (1125)
..|.||..+.|+|||..+-+++..+..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 446799999999999998888776655
No 231
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=91.07 E-value=2.7 Score=54.21 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=35.2
Q ss_pred CCCccCCCCccHHHHHHHHHHHHh-hc-cCC-CeE-EEcCCCchHHHHHHHHHHHHHH
Q 001197 399 QPTLLQGGELRAYQLEGLQWMLSL-FN-NNL-NGI-LADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 399 qP~~l~g~~LrpYQ~egv~wml~l-~~-~~~-~GI-LADEMGLGKTiqaIali~~L~e 452 (1125)
.|..+. =|+-|.+.|...+.- .. .+. ++| |...+|+|||.++-.++..|.+
T Consensus 753 VPD~LP---hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 753 VPKYLP---CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred CCCcCC---ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455443 488888888666654 22 222 233 7999999999999888877654
No 232
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.91 E-value=1.3 Score=53.96 Aligned_cols=43 Identities=21% Similarity=-0.020 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 001197 410 AYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 410 pYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e 452 (1125)
++-...+..++..-.-...-|+..+.|+|||..|-+++..+..
T Consensus 20 ~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 20 DHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4444455544432111111378999999999999888877654
No 233
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.86 E-value=1.3 Score=47.94 Aligned_cols=27 Identities=30% Similarity=0.042 Sum_probs=21.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e 452 (1125)
+.+.+|..+.|+|||..+.++..+...
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 445678999999999999888776654
No 234
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=90.80 E-value=1.8 Score=50.12 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=85.5
Q ss_pred CccHHHHHHHHHHHHhhccCC--Ce-EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCc
Q 001197 407 ELRAYQLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSI 483 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~--~G-ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~ 483 (1125)
.++|+|....+.+...+.++. ++ ++..+.|+||+..|.+++..++........ .|+. -+|.. ..-.|++
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~---~c~~---c~~~~--~g~HPD~ 75 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA---AQRT---RQLIA--AGTHPDL 75 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC---cchH---HHHHh--cCCCCCE
Confidence 689999999988887765443 33 578999999999999999888764321111 1111 11111 1112554
Q ss_pred eEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhh----ccCeeEEEEcCCcccCCh-hhHHHHHHHcccc
Q 001197 484 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKNH-ECALAKTISGYQI 558 (1125)
Q Consensus 484 ~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~----ki~w~~VIIDEAHriKN~-~SklskaL~~l~s 558 (1125)
.++-..-..... +. -.-+.-+.++.-...+. .-.+.++|||+|+.|... ...+-+.|..-+.
T Consensus 76 ~~i~~~p~~~~~------------k~-~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~ 142 (319)
T PRK08769 76 QLVSFIPNRTGD------------KL-RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSP 142 (319)
T ss_pred EEEecCCCcccc------------cc-cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCC
Confidence 444211100000 00 00112233332222221 126789999999999532 2345566666666
Q ss_pred ceEEEeecCCCCCChHHHHHHhhcc
Q 001197 559 QRRLLLTGTPIQNSLQELWSLLNFL 583 (1125)
Q Consensus 559 ~~RLlLTGTPlqN~l~EL~sLL~fL 583 (1125)
...++|++.-...-+.-+-|=+..+
T Consensus 143 ~~~fiL~~~~~~~lLpTIrSRCq~i 167 (319)
T PRK08769 143 GRYLWLISAQPARLPATIRSRCQRL 167 (319)
T ss_pred CCeEEEEECChhhCchHHHhhheEe
Confidence 7777777765555555565544433
No 235
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.72 E-value=2.6 Score=52.71 Aligned_cols=132 Identities=21% Similarity=0.194 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhhccC--CCe-EEEcCCCchHHHHHHHHHHHHHHccCCC-CCEEEEcCcccHHHHHHHHHh-hCCCceEE
Q 001197 412 QLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIVAPKAVLPNWINEFST-WAPSIAAV 486 (1125)
Q Consensus 412 Q~egv~wml~l~~~~--~~G-ILADEMGLGKTiqaIali~~L~e~~~~~-gp~LIVvP~sll~qW~~Ef~k-~~p~~~vi 486 (1125)
|...+..|...+..+ .+. |+..+.|+|||..+.+++..+....+.. .| .-.|+. ...|.. ...+..++
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~p-Cg~C~~------C~~i~~~~~~~~dvi 90 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATP-CGVCES------CVALAPNGPGSIDVV 90 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCc-ccccHH------HHHhhcccCCCceEE
Confidence 445555554444333 233 7899999999999999988776532211 12 222322 222221 11234555
Q ss_pred EEcCChh-HHHHHHHHHHhhcCCccEEEecHHHHHHhHHhh-hccCeeEEEEcCCcccCChh-hHHHHHHHccccceEEE
Q 001197 487 VYDGRPD-ERKAMREEFFSERGRFNVLITHYDLIMRDRQYL-KKVQWIYMIVDEGHRLKNHE-CALAKTISGYQIQRRLL 563 (1125)
Q Consensus 487 vy~G~~~-~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L-~ki~w~~VIIDEAHriKN~~-SklskaL~~l~s~~RLl 563 (1125)
.+.+... ....++. +.....+. ..-++.++||||+|.|.... ..+-+.|.......+++
T Consensus 91 eidaas~~gvd~iRe------------------l~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fI 152 (584)
T PRK14952 91 ELDAASHGGVDDTRE------------------LRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFI 152 (584)
T ss_pred EeccccccCHHHHHH------------------HHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEE
Confidence 5554321 1111111 11111111 12368899999999996531 22334444444555555
Q ss_pred eecCC
Q 001197 564 LTGTP 568 (1125)
Q Consensus 564 LTGTP 568 (1125)
|..|-
T Consensus 153 L~tte 157 (584)
T PRK14952 153 FATTE 157 (584)
T ss_pred EEeCC
Confidence 55453
No 236
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.71 E-value=1.5 Score=54.18 Aligned_cols=39 Identities=28% Similarity=0.318 Sum_probs=26.8
Q ss_pred CeeEEEEcCCcccCCh-hhHHHHHHHccccceEEEeecCC
Q 001197 530 QWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGTP 568 (1125)
Q Consensus 530 ~w~~VIIDEAHriKN~-~SklskaL~~l~s~~RLlLTGTP 568 (1125)
.|.++||||+|++... ...+-+.+...+..-+++|++|-
T Consensus 117 ~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 117 RFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred CeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 6889999999999642 22455555555566677777754
No 237
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=90.60 E-value=2.2 Score=53.52 Aligned_cols=25 Identities=28% Similarity=0.208 Sum_probs=21.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 429 GILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
-||..+.|+|||..|..++..+...
T Consensus 49 ~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 49 FMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCcC
Confidence 4789999999999999999887654
No 238
>PF13173 AAA_14: AAA domain
Probab=90.48 E-value=1.6 Score=43.35 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=27.8
Q ss_pred CeeEEEEcCCcccCChhhHHHHHHHccccceEEEeecCCC
Q 001197 530 QWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPI 569 (1125)
Q Consensus 530 ~w~~VIIDEAHriKN~~SklskaL~~l~s~~RLlLTGTPl 569 (1125)
+-.+|||||+|++.+....+...+... ....+++||+-.
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEccch
Confidence 567899999999987554444444432 457899999853
No 239
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.35 E-value=2 Score=50.69 Aligned_cols=142 Identities=14% Similarity=0.230 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhhccC--CCe-EEEcCCCchHHHHHHHHHHHHHHccCCC-------CCEEEEcCcccHHHHHHHHHhhCC
Q 001197 412 QLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLENKGVT-------GPHVIVAPKAVLPNWINEFSTWAP 481 (1125)
Q Consensus 412 Q~egv~wml~l~~~~--~~G-ILADEMGLGKTiqaIali~~L~e~~~~~-------gp~LIVvP~sll~qW~~Ef~k~~p 481 (1125)
|..+...+...+..+ .++ ++..+.|+|||..|.+++.+++...... .+.|.+|+..-.-.|.. ..-.|
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~--~~~HP 101 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA--AGAHG 101 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH--ccCCC
Confidence 555555555555443 223 6799999999999999999998654211 12344555432222321 12235
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhh----ccCeeEEEEcCCcccCC-hhhHHHHHHHcc
Q 001197 482 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGY 556 (1125)
Q Consensus 482 ~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~----ki~w~~VIIDEAHriKN-~~SklskaL~~l 556 (1125)
++.++.-...... +++.-. ++-+.++.-..++. .-.|.+|||||+|++-. ....+-+.+...
T Consensus 102 Dl~~i~~~~~~~~------------~~~~~~-I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 102 GLLTLERSWNEKG------------KRLRTV-ITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred CeEEEeccccccc------------cccccc-ccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 6555432111000 000000 12344433333322 23788999999999842 222455555555
Q ss_pred ccceEEEe-ecCC
Q 001197 557 QIQRRLLL-TGTP 568 (1125)
Q Consensus 557 ~s~~RLlL-TGTP 568 (1125)
+....++| |-.|
T Consensus 169 p~~~~~IL~t~~~ 181 (365)
T PRK07471 169 PARSLFLLVSHAP 181 (365)
T ss_pred CCCeEEEEEECCc
Confidence 44444444 4444
No 240
>PRK07952 DNA replication protein DnaC; Validated
Probab=90.35 E-value=2.9 Score=46.67 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=31.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHh
Q 001197 428 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST 478 (1125)
Q Consensus 428 ~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k 478 (1125)
+-+|....|+|||..+.+++.++...+ .+++++ .+..|...+..
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRG---KSVLII----TVADIMSAMKD 144 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEE----EHHHHHHHHHH
Confidence 457899999999999999998887642 244544 34556555543
No 241
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.29 E-value=3.1 Score=49.03 Aligned_cols=41 Identities=20% Similarity=0.100 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhccC--CCe-EEEcCCCchHHHHHHHHHHHHHH
Q 001197 412 QLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 412 Q~egv~wml~l~~~~--~~G-ILADEMGLGKTiqaIali~~L~e 452 (1125)
|...+..+...+..+ .++ ++..+.|+|||..+-+++..+..
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 444455444443332 244 78999999999999888877753
No 242
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=90.27 E-value=19 Score=46.58 Aligned_cols=54 Identities=22% Similarity=0.134 Sum_probs=39.3
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCC-CCCEEEEcCc
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVAPK 466 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~-~gp~LIVvP~ 466 (1125)
.|-|-|.++|.+. ....++-...|+|||.+.+.-+++++...+. ...+|+|+-+
T Consensus 4 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT 58 (726)
T TIGR01073 4 HLNPEQREAVKTT------EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFT 58 (726)
T ss_pred ccCHHHHHHHhCC------CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeecc
Confidence 5889999998621 2344555669999999999999999976432 3357777664
No 243
>PRK08116 hypothetical protein; Validated
Probab=90.26 E-value=2.4 Score=47.88 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=29.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHH
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLP 470 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~ 470 (1125)
+.+.+|..+.|+|||..+.+++.++... ..+++++.-..++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ll~ 155 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQLLN 155 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHH
Confidence 3446789999999999999999888775 23555554333333
No 244
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.24 E-value=4.7 Score=49.44 Aligned_cols=118 Identities=23% Similarity=0.270 Sum_probs=58.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceEEEEcCCh-hHHHHHHHHHHhhc
Q 001197 428 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRP-DERKAMREEFFSER 506 (1125)
Q Consensus 428 ~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vivy~G~~-~~R~~l~~~~~~~~ 506 (1125)
.-|+..+.|+|||..|..++..+....+... -|-....+...-.....| .++.+.+.. .....++..
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~-----~pCg~C~~C~~i~~~~~~--Dv~eidaas~~~vddIR~I----- 104 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCSNGPTS-----DPCGTCHNCISIKNSNHP--DVIEIDAASNTSVDDIKVI----- 104 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCcCCCCC-----CCccccHHHHHHhccCCC--CEEEEecccCCCHHHHHHH-----
Confidence 3478999999999999888877665432211 122222332222222233 333333321 111111110
Q ss_pred CCccEEEecHHHHHHhHHhhh-ccCeeEEEEcCCcccCCh-hhHHHHHHHccccceEEEeecCCCC
Q 001197 507 GRFNVLITHYDLIMRDRQYLK-KVQWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGTPIQ 570 (1125)
Q Consensus 507 ~~fdVvITTYe~l~kd~~~L~-ki~w~~VIIDEAHriKN~-~SklskaL~~l~s~~RLlLTGTPlq 570 (1125)
.....+.. .-++.++||||+|.+... ...+-+.+...+..-+++|+.|-..
T Consensus 105 -------------ie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~ 157 (491)
T PRK14964 105 -------------LENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVK 157 (491)
T ss_pred -------------HHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChH
Confidence 01111111 126889999999999652 2234444444455556667665433
No 245
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=89.91 E-value=2.9 Score=48.63 Aligned_cols=145 Identities=15% Similarity=0.096 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhhccC--CCe-EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceEEE
Q 001197 411 YQLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVV 487 (1125)
Q Consensus 411 YQ~egv~wml~l~~~~--~~G-ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~viv 487 (1125)
.|...+..+...+..+ .+. ++..+-|.|||..+.+++..+.......+. |-........-.....|++..+.
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-----~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-----PCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCcCHHHHHHhcCCCCCEEEec
Confidence 3444555554444333 334 789999999999999998887654322221 11122222222334456666655
Q ss_pred EcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhh----ccCeeEEEEcCCcccCC-hhhHHHHHHHccccceEE
Q 001197 488 YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGYQIQRRL 562 (1125)
Q Consensus 488 y~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~----ki~w~~VIIDEAHriKN-~~SklskaL~~l~s~~RL 562 (1125)
..|..- +.+.++.....+. .-.+.++||||+|++.. ....+-+.|...+..-.+
T Consensus 85 ~~~~~i---------------------~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 85 PDGQSI---------------------KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred cccccC---------------------CHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceE
Confidence 544321 1222222222221 12678999999999954 223455555555666667
Q ss_pred EeecCCCCCChHHHHHHhh
Q 001197 563 LLTGTPIQNSLQELWSLLN 581 (1125)
Q Consensus 563 lLTGTPlqN~l~EL~sLL~ 581 (1125)
+|+.+-...-+.-+.|-..
T Consensus 144 Il~t~~~~~ll~TIrSRc~ 162 (329)
T PRK08058 144 ILLTENKHQILPTILSRCQ 162 (329)
T ss_pred EEEeCChHhCcHHHHhhce
Confidence 7766643333444444433
No 246
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=89.69 E-value=2.6 Score=50.35 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~ 453 (1125)
|+..+.|+|||..|.+++..+...
T Consensus 40 Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 40 LFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred EEECCCCCcHHHHHHHHHHHhCCC
Confidence 679999999999999998877654
No 247
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.69 E-value=2.5 Score=53.17 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhccCC--Ce-EEEcCCCchHHHHHHHHHHHHHHc
Q 001197 412 QLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 412 Q~egv~wml~l~~~~~--~G-ILADEMGLGKTiqaIali~~L~e~ 453 (1125)
|...+..+...+.++. +. |+....|+|||..+..++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4555555555444332 34 789999999999999998887653
No 248
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=89.47 E-value=0.48 Score=51.84 Aligned_cols=102 Identities=24% Similarity=0.302 Sum_probs=57.2
Q ss_pred ccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHH
Q 001197 424 NNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFF 503 (1125)
Q Consensus 424 ~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~ 503 (1125)
.|--|-|++.+.|+|||..+.+++..|+-..... .+| |+.. .++
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke-~vL-------------ELNA-------------Sde--------- 89 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLGDSYKE-AVL-------------ELNA-------------SDE--------- 89 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhh-Hhh-------------hccC-------------ccc---------
Confidence 3445679999999999999998888776421100 000 0000 011
Q ss_pred hhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCCh-hhHHHHHHHccccceEEEe
Q 001197 504 SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLL 564 (1125)
Q Consensus 504 ~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~-~SklskaL~~l~s~~RLlL 564 (1125)
...|||=.+..+|...+-.+...++..||+|||..|... .-.+.+.+.-|....|++|
T Consensus 90 ---RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 90 ---RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred ---cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhh
Confidence 223333333334444444566678899999999988542 2234444444444444444
No 249
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=89.45 E-value=1.8 Score=46.70 Aligned_cols=130 Identities=18% Similarity=0.243 Sum_probs=66.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceEEEEcCC--hhHHHHHHHHHHhhcC
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGR--PDERKAMREEFFSERG 507 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vivy~G~--~~~R~~l~~~~~~~~~ 507 (1125)
+|..++|.|||.++.-+++++... ...+.+||--.--.-=.++++.|+-.+.+-++.-. .+...
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~----------- 70 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAE----------- 70 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHH-----------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHH-----------
Confidence 578899999999998888888765 23445554321111122334444322222222211 11111
Q ss_pred CccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhh---HHHHHHHcc-ccceEEEeecCCCCCChHHHHHHhhcc
Q 001197 508 RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHEC---ALAKTISGY-QIQRRLLLTGTPIQNSLQELWSLLNFL 583 (1125)
Q Consensus 508 ~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~S---klskaL~~l-~s~~RLlLTGTPlqN~l~EL~sLL~fL 583 (1125)
.+......+..-++++|+||=+.+.-+... .+.+.+... .....|.|++|--+..+..+......+
T Consensus 71 ----------~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~ 140 (196)
T PF00448_consen 71 ----------IAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF 140 (196)
T ss_dssp ----------HHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS
T ss_pred ----------HHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc
Confidence 111122334444688999998877644332 233333332 456778888887666655555544444
No 250
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=89.44 E-value=1.7 Score=44.35 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=37.4
Q ss_pred EEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCC--CCEEEEeCCCC
Q 001197 760 FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT--ADTVIIFDSDW 815 (1125)
Q Consensus 760 ~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~--Ad~VIi~D~~W 815 (1125)
.+.+.| ....+...+++.|...... .+|+++....+|||++. +..||+.-.|+
T Consensus 25 ~i~~e~-~~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 25 LLLVQG-EDGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred eEEEeC-CChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 344444 3344578899999874322 35777777999999986 68899888665
No 251
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.36 E-value=3.2 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=20.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~ 453 (1125)
|+..+.|+|||..|..++..+...
T Consensus 42 Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 42 LFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCC
Confidence 689999999999999998887653
No 252
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=89.21 E-value=0.3 Score=51.20 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=26.8
Q ss_pred CCccEEEecHHHHHHhHH--hhh--ccCeeEEEEcCCcccCC
Q 001197 507 GRFNVLITHYDLIMRDRQ--YLK--KVQWIYMIVDEGHRLKN 544 (1125)
Q Consensus 507 ~~fdVvITTYe~l~kd~~--~L~--ki~w~~VIIDEAHriKN 544 (1125)
...+|||++|.++..... .+. ...-.+|||||||+|-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 467899999999987532 221 23556899999999844
No 253
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=89.20 E-value=1.6 Score=49.69 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=62.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCC
Q 001197 429 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGR 508 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~~~~~ 508 (1125)
-++..+.|+|||..|.+++..+.............| ......-..|.|++..+.-.+...
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~lel~~s~~~~--------------- 86 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC-----RSCKLIPAGNHPDFLELNPSDLRK--------------- 86 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccch-----hhhhHHhhcCCCceEEecccccCC---------------
Confidence 477999999999999999998876543222211111 222222223333333332222111
Q ss_pred ccEEEecHHHHHHhHHhhh----ccCeeEEEEcCCcccCC-hhhHHHHHHHccccceEEEeecC
Q 001197 509 FNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGYQIQRRLLLTGT 567 (1125)
Q Consensus 509 fdVvITTYe~l~kd~~~L~----ki~w~~VIIDEAHriKN-~~SklskaL~~l~s~~RLlLTGT 567 (1125)
.++ ..+.+..-...+. ...|.+||||||..|.. ....+-+.+...+...+++|+..
T Consensus 87 ~~i---~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 87 IDI---IVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred Ccc---hHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 111 1122221111111 24799999999999853 33445555566677788888765
No 254
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=89.13 E-value=4 Score=50.34 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=22.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 428 NGILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 428 ~GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
..||..+.|+|||..|-.++..+...
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 46889999999999999888877653
No 255
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=89.03 E-value=1.2 Score=50.79 Aligned_cols=43 Identities=21% Similarity=0.054 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhcc--CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 001197 410 AYQLEGLQWMLSLFNN--NLNGILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 410 pYQ~egv~wml~l~~~--~~~GILADEMGLGKTiqaIali~~L~e 452 (1125)
-+|...|+-+...... ..+-++-.+.|+|||-+++++...+..
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 3788777766654333 334477899999999999999988765
No 256
>PF13245 AAA_19: Part of AAA domain
Probab=88.91 E-value=1.4 Score=40.16 Aligned_cols=47 Identities=23% Similarity=0.232 Sum_probs=34.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHc--cCCCCCEEEEcCccc-HHHHHHHH
Q 001197 429 GILADEMGLGKTIQTIALIAYLLEN--KGVTGPHVIVAPKAV-LPNWINEF 476 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~--~~~~gp~LIVvP~sl-l~qW~~Ef 476 (1125)
.++-...|+|||.+++..+.++... .. ..++||++|+.. +.+-.+.+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 4568899999999999999998853 33 568999999844 44443444
No 257
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=88.88 E-value=3.9 Score=47.79 Aligned_cols=151 Identities=11% Similarity=0.029 Sum_probs=82.0
Q ss_pred CccHHHHHHHHHHHHhhccCC--Ce-EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCc
Q 001197 407 ELRAYQLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSI 483 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~--~G-ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~ 483 (1125)
.++|+|......+...+..+. ++ +++.+.|+||+..|.+++.+++...+..+...=.||.- ..-..--.|++
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC-----~~~~~g~HPD~ 76 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGC-----QLMQAGTHPDY 76 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHH-----HHHHcCCCCCE
Confidence 467888888888887765543 34 57999999999999999999886432211111123321 11011123555
Q ss_pred eEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhh----ccCeeEEEEcCCcccCC-hhhHHHHHHHcccc
Q 001197 484 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGYQI 558 (1125)
Q Consensus 484 ~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~----ki~w~~VIIDEAHriKN-~~SklskaL~~l~s 558 (1125)
..+.-.+... .++-+.++.-...+. .-.|.++|||+|++|.. ....+-+.|..=+.
T Consensus 77 ~~i~p~~~~~-------------------~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~ 137 (334)
T PRK07993 77 YTLTPEKGKS-------------------SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPE 137 (334)
T ss_pred EEEecccccc-------------------cCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCC
Confidence 4432222100 011222222222221 23788999999999954 22344555544455
Q ss_pred ceEEEeecCCCCCChHHHHHHhh
Q 001197 559 QRRLLLTGTPIQNSLQELWSLLN 581 (1125)
Q Consensus 559 ~~RLlLTGTPlqN~l~EL~sLL~ 581 (1125)
.-.++|+.+-...-+.-+.|=+.
T Consensus 138 ~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 138 NTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred CeEEEEEECChhhChHHHHhccc
Confidence 55666666544444545554443
No 258
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=88.73 E-value=3.5 Score=47.27 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=29.3
Q ss_pred HHhhhccCeeEEEEcCCcccC-ChhhH---HHHHHHcccc--ceEEEeecCC
Q 001197 523 RQYLKKVQWIYMIVDEGHRLK-NHECA---LAKTISGYQI--QRRLLLTGTP 568 (1125)
Q Consensus 523 ~~~L~ki~w~~VIIDEAHriK-N~~Sk---lskaL~~l~s--~~RLlLTGTP 568 (1125)
...|..++..++||||.|++- +...+ ...+|+.+.. .--+.+.||+
T Consensus 138 ~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 138 LRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 466788899999999999963 33333 3334455432 2335677875
No 259
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=88.72 E-value=1.7 Score=44.48 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=35.0
Q ss_pred EEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccc--cccccCCCC--CCEEEEeCCCC
Q 001197 761 LRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA--GGLGLNLQT--ADTVIIFDSDW 815 (1125)
Q Consensus 761 ~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrA--GG~GLNLq~--Ad~VIi~D~~W 815 (1125)
+.+.+... .+...+++.|+........+|+++.. ..+|||++. +..||+.-.|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 44445433 24478899998643210124555544 899999987 78999988775
No 260
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.48 E-value=4.7 Score=48.66 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=36.8
Q ss_pred CeeEEEEcCCcccCChhh---HHHHHHH-c-cccceEEEeecCCCCCChHHHHHHhhccCC
Q 001197 530 QWIYMIVDEGHRLKNHEC---ALAKTIS-G-YQIQRRLLLTGTPIQNSLQELWSLLNFLLP 585 (1125)
Q Consensus 530 ~w~~VIIDEAHriKN~~S---klskaL~-~-l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P 585 (1125)
.+++||||-+-+...... .+...+. . ......++|++|+-.+.+.+++..++.+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 579999998876543222 2333333 1 234567899999888888888877776544
No 261
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=88.43 E-value=3.2 Score=52.67 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=20.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~ 453 (1125)
||....|+|||..+.+++..+...
T Consensus 42 Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 42 LLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred EEECCCCCcHHHHHHHHHHHhccc
Confidence 789999999999998888877653
No 262
>PRK14974 cell division protein FtsY; Provisional
Probab=88.08 E-value=6.3 Score=46.12 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=29.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc----ccHHHHHHHHHh
Q 001197 429 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK----AVLPNWINEFST 478 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~----sll~qW~~Ef~k 478 (1125)
.++....|.|||.++..++.++...+ .+++++..- ....||..-...
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~g---~~V~li~~Dt~R~~a~eqL~~~a~~ 193 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKNG---FSVVIAAGDTFRAGAIEQLEEHAER 193 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCcCcHHHHHHHHHHHHH
Confidence 35688999999998877777665432 345555432 334566443333
No 263
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.07 E-value=6 Score=47.21 Aligned_cols=122 Identities=14% Similarity=0.189 Sum_probs=64.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcC-c---ccHHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhh
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-K---AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSE 505 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP-~---sll~qW~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~~ 505 (1125)
.|....|+|||..+..++..+...+ ..+++|.- . ..+.||.. |+..
T Consensus 245 ~LVGptGvGKTTTiaKLA~~L~~~G---kkVglI~aDt~RiaAvEQLk~----yae~----------------------- 294 (436)
T PRK11889 245 ALIGPTGVGKTTTLAKMAWQFHGKK---KTVGFITTDHSRIGTVQQLQD----YVKT----------------------- 294 (436)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcC---CcEEEEecCCcchHHHHHHHH----Hhhh-----------------------
Confidence 5788899999999888887765432 24444443 2 24555553 2211
Q ss_pred cCCccEE-EecHHHHHHhHHhhhc-cCeeEEEEcCCcccCChhh---HHHHHHHccc-cceEEEeecCCCCCChHHHHHH
Q 001197 506 RGRFNVL-ITHYDLIMRDRQYLKK-VQWIYMIVDEGHRLKNHEC---ALAKTISGYQ-IQRRLLLTGTPIQNSLQELWSL 579 (1125)
Q Consensus 506 ~~~fdVv-ITTYe~l~kd~~~L~k-i~w~~VIIDEAHriKN~~S---klskaL~~l~-s~~RLlLTGTPlqN~l~EL~sL 579 (1125)
..+.++ +.+...+.+....+.. .++++||||-+=+.-+... .+...+.... ....|.|++|--.+.+.+....
T Consensus 295 -lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~ 373 (436)
T PRK11889 295 -IGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITN 373 (436)
T ss_pred -cCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHH
Confidence 112222 2233334333333443 3689999998876543322 2333332222 2334557777655555555554
Q ss_pred hhc
Q 001197 580 LNF 582 (1125)
Q Consensus 580 L~f 582 (1125)
++.
T Consensus 374 F~~ 376 (436)
T PRK11889 374 FKD 376 (436)
T ss_pred hcC
Confidence 443
No 264
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=88.03 E-value=5.1 Score=46.50 Aligned_cols=152 Identities=12% Similarity=0.046 Sum_probs=83.4
Q ss_pred CccHHHHHHHHHHHHhhccCC--Ce-EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCc
Q 001197 407 ELRAYQLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSI 483 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~--~G-ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~ 483 (1125)
.++|+|...-+.+...+.++. ++ ++..+.|+||+..|.+++.++.......+| | .....-..-..--.|++
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~----C--g~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEA----C--GFCHSCELMQSGNHPDL 76 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC----C--CCCHHHHHHHcCCCCCE
Confidence 478888888888877765443 23 678999999999999999988765422121 1 11111111011122444
Q ss_pred eEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhh----hccCeeEEEEcCCcccCC-hhhHHHHHHHcccc
Q 001197 484 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL----KKVQWIYMIVDEGHRLKN-HECALAKTISGYQI 558 (1125)
Q Consensus 484 ~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L----~ki~w~~VIIDEAHriKN-~~SklskaL~~l~s 558 (1125)
.++.-.+.... ++-+.++.-...+ ..-.|.++|||+||+|.. ....+-+.|..-+.
T Consensus 77 ~~i~p~~~~~~-------------------I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~ 137 (319)
T PRK06090 77 HVIKPEKEGKS-------------------ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAP 137 (319)
T ss_pred EEEecCcCCCc-------------------CCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCC
Confidence 44322110000 1222222211222 123688999999999953 22345555555566
Q ss_pred ceEEEeecCCCCCChHHHHHHhhcc
Q 001197 559 QRRLLLTGTPIQNSLQELWSLLNFL 583 (1125)
Q Consensus 559 ~~RLlLTGTPlqN~l~EL~sLL~fL 583 (1125)
.-.++|+.+-...-+.-+.|=+..+
T Consensus 138 ~t~fiL~t~~~~~lLpTI~SRCq~~ 162 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVSRCQQW 162 (319)
T ss_pred CeEEEEEECChhhChHHHHhcceeE
Confidence 6667777665555566666654433
No 265
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.62 E-value=3.8 Score=50.56 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhccCC--Ce-EEEcCCCchHHHHHHHHHHHHHHc
Q 001197 412 QLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 412 Q~egv~wml~l~~~~~--~G-ILADEMGLGKTiqaIali~~L~e~ 453 (1125)
|...+..+......+. +. ++..+.|+|||..+.+++..+...
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4444444444433333 23 789999999999999998887654
No 266
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.49 E-value=3.9 Score=43.18 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=21.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 429 GILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
-++..+.|.|||..+..++..+...
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3679999999999999998887754
No 267
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.48 E-value=3.9 Score=51.34 Aligned_cols=41 Identities=17% Similarity=0.103 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhccCCC--e-EEEcCCCchHHHHHHHHHHHHHH
Q 001197 412 QLEGLQWMLSLFNNNLN--G-ILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 412 Q~egv~wml~l~~~~~~--G-ILADEMGLGKTiqaIali~~L~e 452 (1125)
|...+..+...+.++.- . |+..+.|+|||..+.+++..+..
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 55556666555444432 2 78999999999999999887753
No 268
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.26 E-value=8.2 Score=46.11 Aligned_cols=42 Identities=14% Similarity=0.014 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhccC--CC-eEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 412 QLEGLQWMLSLFNNN--LN-GILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 412 Q~egv~wml~l~~~~--~~-GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
|...+..+.....++ .+ -|+..+.|+|||..|.+++..+...
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 344444444444333 23 3679999999999999998887653
No 269
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.23 E-value=8.5 Score=47.78 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHH
Q 001197 430 ILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e 452 (1125)
|+..+.|+|||..|-.++..+..
T Consensus 42 Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 42 LFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 78999999999999888887754
No 270
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=87.21 E-value=11 Score=43.66 Aligned_cols=44 Identities=18% Similarity=0.080 Sum_probs=27.3
Q ss_pred CccHHHHHHHHHHHHhh----ccCCCeEEEcCCCchHHHHHHHHHHHH
Q 001197 407 ELRAYQLEGLQWMLSLF----NNNLNGILADEMGLGKTIQTIALIAYL 450 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~----~~~~~GILADEMGLGKTiqaIali~~L 450 (1125)
.-++...+.+.-++... ....+.++..+.|+|||..+.+++..+
T Consensus 28 vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 28 IGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 34455555554444321 112356889999999999887776544
No 271
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=87.21 E-value=4 Score=51.00 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~ 453 (1125)
|+..+.|+|||..|.+++..+...
T Consensus 42 Lf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 42 IFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred EEECCCCCCHHHHHHHHHHhhccc
Confidence 789999999999999998887653
No 272
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=87.07 E-value=5.8 Score=46.17 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=78.3
Q ss_pred ccHHHHHHHHHHHHhhccCC--Ce-EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHH-hhCCCc
Q 001197 408 LRAYQLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFS-TWAPSI 483 (1125)
Q Consensus 408 LrpYQ~egv~wml~l~~~~~--~G-ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~-k~~p~~ 483 (1125)
++|+|...-+.+...+.++. ++ ++..+.|+||+..|.+++..+.......+...=.|+. ...+. .-.|++
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~s------C~~~~~g~HPD~ 76 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHS------CHLFQAGNHPDF 76 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHH------HHHHhcCCCCCE
Confidence 57888888777777766543 45 4689999999999999999888643221111111111 11111 112443
Q ss_pred eEEEE-cCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhh----ccCeeEEEEcCCcccCCh-hhHHHHHHHccc
Q 001197 484 AAVVY-DGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKNH-ECALAKTISGYQ 557 (1125)
Q Consensus 484 ~vivy-~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~----ki~w~~VIIDEAHriKN~-~SklskaL~~l~ 557 (1125)
.++.- .|.. +.-+.++.-...+. .-.|.++|||+||+|... ...+-+.|..-+
T Consensus 77 ~~i~p~~~~~---------------------I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp 135 (325)
T PRK06871 77 HILEPIDNKD---------------------IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPR 135 (325)
T ss_pred EEEccccCCC---------------------CCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCC
Confidence 33321 1110 11122222111111 236889999999999642 234555555545
Q ss_pred cceEEEeecCCCCCChHHHHHH
Q 001197 558 IQRRLLLTGTPIQNSLQELWSL 579 (1125)
Q Consensus 558 s~~RLlLTGTPlqN~l~EL~sL 579 (1125)
..-.++|+.+-...-+.-+.|=
T Consensus 136 ~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 136 PNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred CCeEEEEEECChHhCchHHHhh
Confidence 6666777766444444455543
No 273
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.69 E-value=4.6 Score=44.64 Aligned_cols=26 Identities=23% Similarity=0.010 Sum_probs=20.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHH
Q 001197 427 LNGILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 427 ~~GILADEMGLGKTiqaIali~~L~e 452 (1125)
.+-+|..+.|+|||-.+.++...+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34588999999999888777766554
No 274
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.55 E-value=3.2 Score=52.17 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~ 453 (1125)
|+..+.|+|||..|..++..+...
T Consensus 42 Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 42 LFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred EEECCCCCCHHHHHHHHHHhcccc
Confidence 579999999999999998887653
No 275
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=86.50 E-value=4.2 Score=44.25 Aligned_cols=27 Identities=26% Similarity=0.074 Sum_probs=21.1
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e 452 (1125)
+.+.+|..+.|+|||-.+.++...+..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345688999999999888877766544
No 276
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.50 E-value=6.9 Score=49.10 Aligned_cols=113 Identities=25% Similarity=0.358 Sum_probs=57.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceEEEEcCChh-HHHHHHHHHHhhcCC
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPD-ERKAMREEFFSERGR 508 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vivy~G~~~-~R~~l~~~~~~~~~~ 508 (1125)
|+..+-|+|||..+.+++..+....+..+.-.-.|+. +.++.. ..+..++.+.|... .-..++.
T Consensus 42 Lf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~------c~~i~~-g~~~d~~eid~~s~~~v~~ir~-------- 106 (576)
T PRK14965 42 LFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP------CVEITE-GRSVDVFEIDGASNTGVDDIRE-------- 106 (576)
T ss_pred EEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH------HHHHhc-CCCCCeeeeeccCccCHHHHHH--------
Confidence 6899999999999999988876533221111111211 122222 12344455554321 0011111
Q ss_pred ccEEEecHHHHHHhHHhh-hccCeeEEEEcCCcccCCh-hhHHHHHHHccccceEEEeecC
Q 001197 509 FNVLITHYDLIMRDRQYL-KKVQWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGT 567 (1125)
Q Consensus 509 fdVvITTYe~l~kd~~~L-~ki~w~~VIIDEAHriKN~-~SklskaL~~l~s~~RLlLTGT 567 (1125)
+.....+. ..-+|.++||||+|++... ...+.+.|......-+++|+.|
T Consensus 107 ----------l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 107 ----------LRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred ----------HHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 11111111 1236889999999998532 2345555555555556666555
No 277
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=86.39 E-value=1.7 Score=42.20 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=22.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccH
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL 469 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll 469 (1125)
+|-.+.|+|||..+-.++.++ .-+++.+....+.
T Consensus 2 ll~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELI 35 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHH
T ss_pred EEECcCCCCeeHHHHHHHhhc------ccccccccccccc
Confidence 567889999999887777665 1245555544443
No 278
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=86.13 E-value=0.77 Score=57.17 Aligned_cols=164 Identities=16% Similarity=0.216 Sum_probs=98.4
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHH-HHhhC---
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINE-FSTWA--- 480 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~qW~~E-f~k~~--- 480 (1125)
....|||.+.+.-|.... -....+.-..-+|||...+.++.|.+... .+|+|+|.|+ .....|..+ |...+
T Consensus 15 ~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~--P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQD--PGPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEeC--CCCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 478999999887655422 23346777889999998888888877654 5799999999 667777643 44332
Q ss_pred CCceEEEEc-CChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCccc----CChhhHHHHHH--
Q 001197 481 PSIAAVVYD-GRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRL----KNHECALAKTI-- 553 (1125)
Q Consensus 481 p~~~vivy~-G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHri----KN~~SklskaL-- 553 (1125)
|.+.-.+.. ........+....+. + -.+.++.... ...|......+||+||...+ ++.......+.
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f~--g-g~l~~~ga~S----~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R 163 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRFP--G-GFLYLVGANS----PSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKR 163 (557)
T ss_pred HHHHHHhCchhhcccCCchhheecC--C-CEEEEEeCCC----CcccccCCcCEEEEechhhccccCccCCCHHHHHHHH
Confidence 333222211 000111111111111 1 1233333322 24477788999999999998 23333444333
Q ss_pred -HccccceEEEeecCCCCCChHHHHHHh
Q 001197 554 -SGYQIQRRLLLTGTPIQNSLQELWSLL 580 (1125)
Q Consensus 554 -~~l~s~~RLlLTGTPlqN~l~EL~sLL 580 (1125)
..|.....+++..||.......++.+.
T Consensus 164 ~~tf~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 164 TKTFGSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred HhhhccCcEEEEeCCCCCCCCCHHHHHH
Confidence 455677899999999877555555443
No 279
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.10 E-value=3.9 Score=50.48 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=73.7
Q ss_pred hhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhC-CCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEee
Q 001197 714 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN-DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 792 (1125)
Q Consensus 714 ~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~-gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLS 792 (1125)
..|||-+....++......|.++||.++.......+.+.|... |..+..++|.++..+|.....+...++.+ |++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEEC
Confidence 4689999988888888888999999999998888887777643 77899999999999998888877766654 4666
Q ss_pred ccccccccCCCCCCEEEEeC
Q 001197 793 TRAGGLGLNLQTADTVIIFD 812 (1125)
Q Consensus 793 TrAGG~GLNLq~Ad~VIi~D 812 (1125)
|+.+- =+-+...+.||+-+
T Consensus 83 Trsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred ChHHH-cCcccCCCEEEEEC
Confidence 66532 23456677777654
No 280
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=86.09 E-value=9.8 Score=43.29 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=26.0
Q ss_pred CeeEEEEcCCcccCCh-hhHHHHHHHccccceEEEeecCC
Q 001197 530 QWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGTP 568 (1125)
Q Consensus 530 ~w~~VIIDEAHriKN~-~SklskaL~~l~s~~RLlLTGTP 568 (1125)
...+|||||+|.+... ...+...+..+....+++++++.
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~ 141 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY 141 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 4679999999999542 23455555555566677777653
No 281
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=86.06 E-value=4.8 Score=42.01 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=35.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhh
Q 001197 429 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 479 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~ 479 (1125)
.+++.+.|+|||..++.++...... ..++++|.......+....+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEECCCCHHHHHHHHHHc
Confidence 3678999999999999888776643 35788888776666666555544
No 282
>PRK06921 hypothetical protein; Provisional
Probab=85.93 E-value=4.8 Score=45.46 Aligned_cols=28 Identities=25% Similarity=0.146 Sum_probs=23.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
+.+.+|..++|+|||..+.|++..+...
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 4556789999999999999998887764
No 283
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.64 E-value=2.8 Score=52.90 Aligned_cols=42 Identities=19% Similarity=0.011 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhccCC---CeEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 412 QLEGLQWMLSLFNNNL---NGILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 412 Q~egv~wml~l~~~~~---~GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
|...+..+...+..+. .-|+..+.|+|||..|.+++..+...
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 4444444444444432 23789999999999999999888653
No 284
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=85.29 E-value=11 Score=44.62 Aligned_cols=45 Identities=29% Similarity=0.280 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHhh-c--cCCCeEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 409 RAYQLEGLQWMLSLF-N--NNLNGILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 409 rpYQ~egv~wml~l~-~--~~~~GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
|+-|++-+.-.+... . ...+.+|..+.|+|||..+-.++..+...
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 555655554444322 1 23457899999999999998888776554
No 285
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.15 E-value=10 Score=46.66 Aligned_cols=41 Identities=22% Similarity=0.104 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhccC--CCe-EEEcCCCchHHHHHHHHHHHHHH
Q 001197 412 QLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 412 Q~egv~wml~l~~~~--~~G-ILADEMGLGKTiqaIali~~L~e 452 (1125)
|...+..+.....++ .++ ++..+.|+|||..|..++..+..
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444444444444333 233 57999999999998888777653
No 286
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=84.85 E-value=11 Score=47.05 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=20.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~ 453 (1125)
|+..+-|+|||..|-.++..+...
T Consensus 42 Lf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 42 LFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCC
Confidence 569999999999998888776543
No 287
>PRK08727 hypothetical protein; Validated
Probab=84.69 E-value=3.8 Score=45.18 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=20.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 429 GILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
-+|..+.|+|||-.+.+++..+...
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4789999999998888887776553
No 288
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=84.64 E-value=7.8 Score=38.69 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=25.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 466 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~ 466 (1125)
+|..+.|+|||..+..++..+.. ..++++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECC
Confidence 56778999999999888877655 24567766654
No 289
>PHA02533 17 large terminase protein; Provisional
Probab=84.51 E-value=3.9 Score=50.79 Aligned_cols=56 Identities=23% Similarity=0.131 Sum_probs=37.2
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 466 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~ 466 (1125)
..|.|+|..-+..|.. +.-.++.-.=..|||..+.+++.++.-..+ ...+++++|.
T Consensus 58 f~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~ 113 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHK 113 (534)
T ss_pred cCCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCC
Confidence 4799999998887632 222356666889999888766655443222 2367777784
No 290
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=84.43 E-value=4.8 Score=52.78 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhh--ccCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 001197 412 QLEGLQWMLSLF--NNNLNGILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 412 Q~egv~wml~l~--~~~~~GILADEMGLGKTiqaIali~~L~e 452 (1125)
|.+-+.+|+... ....|.||..|.|+|||..+=+++..+..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 333466666532 22346689999999999888777665543
No 291
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=84.02 E-value=7.8 Score=47.15 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=19.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 429 GILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
.+|..+.|+|||-.+-++..++...
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~ 168 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESN 168 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHh
Confidence 3589999999998887777666553
No 292
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=83.98 E-value=5.6 Score=44.51 Aligned_cols=46 Identities=30% Similarity=0.380 Sum_probs=28.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHH------HHHHHHHh
Q 001197 429 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLP------NWINEFST 478 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~------qW~~Ef~k 478 (1125)
+.+..++|+|||+..=+++..+-+ ...++|+.|+.++. -|..++..
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 356799999999988755544432 22345677765543 35555544
No 293
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=83.86 E-value=6.9 Score=49.44 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=78.7
Q ss_pred cHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHH----HHHHHH-----h
Q 001197 409 RAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPN----WINEFS-----T 478 (1125)
Q Consensus 409 rpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~q----W~~Ef~-----k 478 (1125)
-|+=.+-+.-++..|.++...++++ =|.|||..+..++.++....+ -.++|.+|. ++... -+.-++ .
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taP-RqrGKS~iVgi~l~~La~f~G--i~IlvTAH~~~ts~evF~rv~~~le~lg~~~ 247 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVP-RRCGKTTIMAIILAAMISFLE--IDIVVQAQRKTMCLTLYNRVETVVHAYQHKP 247 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEec-cCCCcHHHHHHHHHHHHHhcC--CeEEEECCChhhHHHHHHHHHHHHHHhcccc
Confidence 3455556778888888888777765 899999887766666554222 368888885 33222 222233 6
Q ss_pred hCCCceEEE-EcCChhHHHHHHHHHHhhcCCccEEEecHH----------HHHHhHHhhhccCeeEEEEcCCcccCChhh
Q 001197 479 WAPSIAAVV-YDGRPDERKAMREEFFSERGRFNVLITHYD----------LIMRDRQYLKKVQWIYMIVDEGHRLKNHEC 547 (1125)
Q Consensus 479 ~~p~~~viv-y~G~~~~R~~l~~~~~~~~~~fdVvITTYe----------~l~kd~~~L~ki~w~~VIIDEAHriKN~~S 547 (1125)
|+|....++ ..|.. ..|.+.... ...+.........++++|||||+-+...
T Consensus 248 ~fp~~~~iv~vkgg~----------------E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~~-- 309 (752)
T PHA03333 248 WFPEEFKIVTLKGTD----------------ENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNPG-- 309 (752)
T ss_pred ccCCCceEEEeeCCe----------------eEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCHH--
Confidence 777553222 33321 111111100 0011123344457899999999999762
Q ss_pred HHHHHHHcc-ccceEEEeecCCC
Q 001197 548 ALAKTISGY-QIQRRLLLTGTPI 569 (1125)
Q Consensus 548 klskaL~~l-~s~~RLlLTGTPl 569 (1125)
.+...+-.+ .....+++.-||.
T Consensus 310 ~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 310 ALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHHHHHHccCCCceEEEeCCC
Confidence 333333222 2456666666664
No 294
>PRK05580 primosome assembly protein PriA; Validated
Probab=83.83 E-value=6.2 Score=50.54 Aligned_cols=95 Identities=14% Similarity=0.155 Sum_probs=72.3
Q ss_pred hcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHh-CCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeec
Q 001197 715 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL-NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 793 (1125)
Q Consensus 715 ~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~-~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLST 793 (1125)
.|||.......+......|.++||.+........+...|.. -|..+..++|+++..+|.....+...+..+ ++++|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEec
Confidence 47788777777766667789999999999988887777764 378899999999999999888888776655 56677
Q ss_pred cccccccCCCCCCEEEEeCC
Q 001197 794 RAGGLGLNLQTADTVIIFDS 813 (1125)
Q Consensus 794 rAGG~GLNLq~Ad~VIi~D~ 813 (1125)
+..- =+.+.....||+-+-
T Consensus 249 rsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred cHHh-cccccCCCEEEEECC
Confidence 6432 245666777776553
No 295
>PRK04195 replication factor C large subunit; Provisional
Probab=83.81 E-value=9.2 Score=46.89 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=19.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHH
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYL 450 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L 450 (1125)
....+|..+.|+|||..+-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3456889999999998887776543
No 296
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=83.77 E-value=6.3 Score=47.06 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=20.7
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~ 453 (1125)
+|..+.|+|||..+-++...+.+.
T Consensus 140 ~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 140 FIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHh
Confidence 689999999999998888877664
No 297
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.47 E-value=8.8 Score=48.51 Aligned_cols=41 Identities=17% Similarity=0.107 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhccC--CCe-EEEcCCCchHHHHHHHHHHHHHH
Q 001197 412 QLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 412 Q~egv~wml~l~~~~--~~G-ILADEMGLGKTiqaIali~~L~e 452 (1125)
|...+..+...+.++ .++ |+..+-|+|||..|..++..+..
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 555555555555443 233 68999999999999999887765
No 298
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=83.29 E-value=7.5 Score=49.73 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=20.7
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~ 453 (1125)
|+..+.|.|||..|-+++..+...
T Consensus 44 LF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 44 LFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred EEECCCCCcHHHHHHHHHHHhccc
Confidence 789999999999999988877653
No 299
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=83.14 E-value=13 Score=46.78 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~ 453 (1125)
|+..+.|+|||..|.+++..+...
T Consensus 42 Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 42 IFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCC
Confidence 679999999999999998887653
No 300
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=83.04 E-value=11 Score=44.13 Aligned_cols=165 Identities=17% Similarity=0.094 Sum_probs=81.1
Q ss_pred ccHHHHHHHHHHHHhhccCCCe-EEEcCCCchHHHHHHHHHHHHHHccCC--CCCEEEEcCcccHHHHHHHHH-hhCCCc
Q 001197 408 LRAYQLEGLQWMLSLFNNNLNG-ILADEMGLGKTIQTIALIAYLLENKGV--TGPHVIVAPKAVLPNWINEFS-TWAPSI 483 (1125)
Q Consensus 408 LrpYQ~egv~wml~l~~~~~~G-ILADEMGLGKTiqaIali~~L~e~~~~--~gp~LIVvP~sll~qW~~Ef~-k~~p~~ 483 (1125)
++|+|...-+.+....+.-.++ ++..+.|+|||..|..++..+...... ..|+ =.|+. ...+. .-.|++
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~C-g~C~~------C~~~~~~~HPD~ 74 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPC-GTCAA------CNWFAQGNHPDY 74 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCC-CCCHH------HHHHHcCCCCCE
Confidence 4678887777777653333345 468999999999999999888765321 1121 11211 11111 112444
Q ss_pred eEEEEcCCh-------hHHHHHHHHHHhhc-CCccEEEecHHHHHHhHHhhh----ccCeeEEEEcCCcccCCh-hhHHH
Q 001197 484 AAVVYDGRP-------DERKAMREEFFSER-GRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKNH-ECALA 550 (1125)
Q Consensus 484 ~vivy~G~~-------~~R~~l~~~~~~~~-~~fdVvITTYe~l~kd~~~L~----ki~w~~VIIDEAHriKN~-~Skls 550 (1125)
.++.-.+.. +............. ..+ .-.++-+.+..-...+. .-.|.++|||+||+|... ...+-
T Consensus 75 ~~i~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~-~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLL 153 (342)
T PRK06964 75 RIVRPEALAAEAPGAADEAKEADADEGGKKTKAP-SKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALL 153 (342)
T ss_pred EEEecccccccccccccccccchhhccccccccc-ccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHH
Confidence 433212110 00000000000000 000 01123344433222222 236889999999999542 23455
Q ss_pred HHHHccccceEEEeecCCCCCChHHHHHHh
Q 001197 551 KTISGYQIQRRLLLTGTPIQNSLQELWSLL 580 (1125)
Q Consensus 551 kaL~~l~s~~RLlLTGTPlqN~l~EL~sLL 580 (1125)
+.|..-+..-.++|+.+-...=+.-+.|=+
T Consensus 154 KtLEEPp~~t~fiL~t~~~~~LLpTI~SRc 183 (342)
T PRK06964 154 KTLEEPPPGTVFLLVSARIDRLLPTILSRC 183 (342)
T ss_pred HHhcCCCcCcEEEEEECChhhCcHHHHhcC
Confidence 555555566667777665455455555533
No 301
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=82.72 E-value=7.7 Score=46.04 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=56.7
Q ss_pred HHHHHHHHh-hccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceEEEEcCCh
Q 001197 414 EGLQWMLSL-FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRP 492 (1125)
Q Consensus 414 egv~wml~l-~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vivy~G~~ 492 (1125)
.++..++.- +..+.-.+|.-++|.|||..++.++..+... .+++|+|.-.....|......++.-..
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~EEs~~qi~~Ra~rlg~~~--------- 136 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGEESPEQIKLRADRLGIST--------- 136 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCcCHHHHHHHHHHcCCCc---------
Confidence 456665531 2222224778999999999998888766543 357788765544555444333332110
Q ss_pred hHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccC
Q 001197 493 DERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLK 543 (1125)
Q Consensus 493 ~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriK 543 (1125)
-++.+.....+..-...+...+.++||||+.+.+.
T Consensus 137 ----------------~~l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 137 ----------------ENLYLLAETNLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred ----------------ccEEEEccCcHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 01111111111111223445678999999998874
No 302
>PRK06893 DNA replication initiation factor; Validated
Probab=82.42 E-value=8.6 Score=42.27 Aligned_cols=24 Identities=21% Similarity=0.054 Sum_probs=20.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~ 453 (1125)
+|..+.|+|||-.+.+++..+...
T Consensus 43 ~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 43 YIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999998888887776554
No 303
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=82.24 E-value=2.3 Score=47.88 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=39.3
Q ss_pred ccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHcc-CCCCCEEEEcCccc
Q 001197 408 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK-GVTGPHVIVAPKAV 468 (1125)
Q Consensus 408 LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~-~~~gp~LIVvP~sl 468 (1125)
|-+-|.+++.+ . ..+.++-...|+|||.+.+.-+.+++..+ .....+|+|+++..
T Consensus 1 l~~eQ~~~i~~-~-----~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~ 56 (315)
T PF00580_consen 1 LTDEQRRIIRS-T-----EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNA 56 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHH
T ss_pred CCHHHHHHHhC-C-----CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHH
Confidence 45678888875 2 34445555699999999999999998876 33457899998844
No 304
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=81.99 E-value=8.3 Score=46.83 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=20.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 429 GILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
.+|..+.|+|||..+-++...+...
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~ 175 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEK 175 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4689999999999988888777654
No 305
>PRK04132 replication factor C small subunit; Provisional
Probab=81.99 E-value=6.1 Score=51.45 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=38.8
Q ss_pred CeeEEEEcCCcccCC-hhhHHHHHHHccccceEEEeecCCCCCChHHHHHHhhcc
Q 001197 530 QWIYMIVDEGHRLKN-HECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFL 583 (1125)
Q Consensus 530 ~w~~VIIDEAHriKN-~~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL 583 (1125)
++.+|||||+|+|.. ....+.+.+..++...+++|+.++...-+.-+-|-+..+
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i 684 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 684 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEE
Confidence 578999999999953 334566666666778899999888766666666544333
No 306
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=81.71 E-value=9 Score=49.60 Aligned_cols=128 Identities=14% Similarity=0.107 Sum_probs=73.0
Q ss_pred CCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHH-HHHHHHhhCCCc
Q 001197 405 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN-WINEFSTWAPSI 483 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~q-W~~Ef~k~~p~~ 483 (1125)
+..|-+-|.+++..++. .+.-.+|-...|+|||...-+++..+... ...+++++|+..... +..... .
T Consensus 350 ~~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~~~---g~~V~~~ApTg~Aa~~L~~~~g-----~ 418 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWEAA---GYRVIGAALSGKAAEGLQAESG-----I 418 (744)
T ss_pred cCCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHHhC---CCeEEEEeCcHHHHHHHHhccC-----C
Confidence 45799999999987764 23346888999999998776665444332 246788889855432 222110 0
Q ss_pred eEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHH-ccccceEE
Q 001197 484 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTIS-GYQIQRRL 562 (1125)
Q Consensus 484 ~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~-~l~s~~RL 562 (1125)
.....+ .+...+ .+.. -.....++|||||+..+... .+...+. ......++
T Consensus 419 ~a~Ti~-------~~~~~~-----------------~~~~--~~~~~~~llIvDEasMv~~~--~~~~Ll~~~~~~~~kl 470 (744)
T TIGR02768 419 ESRTLA-------SLEYAW-----------------ANGR--DLLSDKDVLVIDEAGMVGSR--QMARVLKEAEEAGAKV 470 (744)
T ss_pred ceeeHH-------HHHhhh-----------------ccCc--ccCCCCcEEEEECcccCCHH--HHHHHHHHHHhcCCEE
Confidence 000000 000000 0000 01236789999999988543 2333443 23467789
Q ss_pred EeecCCCCC
Q 001197 563 LLTGTPIQN 571 (1125)
Q Consensus 563 lLTGTPlqN 571 (1125)
+|.|=|-|-
T Consensus 471 iLVGD~~QL 479 (744)
T TIGR02768 471 VLVGDPEQL 479 (744)
T ss_pred EEECChHHc
Confidence 999976443
No 307
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=81.35 E-value=1.2 Score=57.39 Aligned_cols=113 Identities=20% Similarity=0.263 Sum_probs=72.8
Q ss_pred hccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccH----HHHHHHHHhhCCCceEEEEcCChhHHHH
Q 001197 423 FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVL----PNWINEFSTWAPSIAAVVYDGRPDERKA 497 (1125)
Q Consensus 423 ~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll----~qW~~Ef~k~~p~~~vivy~G~~~~R~~ 497 (1125)
|.-..+..+.+++|.|||+.+-..+.+.+...+ .+.+++|+|. .++ ..|..-+.. |+.+++-..|....-
T Consensus 940 y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p-~~kvvyIap~kalvker~~Dw~~r~~~--~g~k~ie~tgd~~pd-- 1014 (1230)
T KOG0952|consen 940 YHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP-GSKVVYIAPDKALVKERSDDWSKRDEL--PGIKVIELTGDVTPD-- 1014 (1230)
T ss_pred eecchhhhhcCCccCcchhHHHHHHHHHhccCC-CccEEEEcCCchhhcccccchhhhccc--CCceeEeccCccCCC--
Confidence 444556788999999999998666655555444 3688999997 333 457655443 567777776653221
Q ss_pred HHHHHHhhcCCccEEEecHHHHHHhHHhhhc----cCeeEEEEcCCcccCCh
Q 001197 498 MREEFFSERGRFNVLITHYDLIMRDRQYLKK----VQWIYMIVDEGHRLKNH 545 (1125)
Q Consensus 498 l~~~~~~~~~~fdVvITTYe~l~kd~~~L~k----i~w~~VIIDEAHriKN~ 545 (1125)
.. .....+++|||++........... .....+|+||.|.++..
T Consensus 1015 ~~-----~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 VK-----AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred hh-----heecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 10 114678999999876443221111 13457999999998654
No 308
>PRK12377 putative replication protein; Provisional
Probab=81.22 E-value=12 Score=42.08 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=22.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 427 LNGILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 427 ~~GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
.+-+|..+.|+|||-.+.|++..+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 345788999999999999999888764
No 309
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=80.59 E-value=20 Score=42.53 Aligned_cols=27 Identities=30% Similarity=0.170 Sum_probs=21.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e 452 (1125)
+...+|..++|.|||.++..++..+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~ 163 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVM 163 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444578999999999999888877654
No 310
>PRK05642 DNA replication initiation factor; Validated
Probab=80.53 E-value=7.1 Score=43.16 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=24.9
Q ss_pred eeEEEEcCCcccCChh---hHHHHHHHcc-ccceEEEeecC
Q 001197 531 WIYMIVDEGHRLKNHE---CALAKTISGY-QIQRRLLLTGT 567 (1125)
Q Consensus 531 w~~VIIDEAHriKN~~---SklskaL~~l-~s~~RLlLTGT 567 (1125)
.+++|||+.|.+.+.. ..++..+..+ ....++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 4689999999886532 3355555443 34577888887
No 311
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=79.62 E-value=9.6 Score=48.84 Aligned_cols=96 Identities=21% Similarity=0.227 Sum_probs=66.6
Q ss_pred hcchHHHHHHHhHHhhhCCCEEEEEeccchHHHH----HHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEE
Q 001197 715 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDI----LEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 790 (1125)
Q Consensus 715 ~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldi----Le~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfL 790 (1125)
.|||-....-.+-.....|.+++|.++....+.. +..++...|+++..++|+++..+|..++.....++.+ ++
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~---Iv 368 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD---IV 368 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC---EE
Confidence 4566544333222233568899999998876554 4455555689999999999999999999999887655 45
Q ss_pred eeccc-cccccCCCCCCEEEEeCC
Q 001197 791 LSTRA-GGLGLNLQTADTVIIFDS 813 (1125)
Q Consensus 791 LSTrA-GG~GLNLq~Ad~VIi~D~ 813 (1125)
+.|.+ ....+.+.....||+=+.
T Consensus 369 VgT~~ll~~~v~~~~l~lvVIDE~ 392 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIIDEQ 392 (681)
T ss_pred EchHHHhcccchhcccceEEEech
Confidence 55543 445667777887776443
No 312
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=79.43 E-value=13 Score=43.08 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=20.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~ 453 (1125)
||..+.|+|||..+.+++..+...
T Consensus 40 Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 40 LFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCC
Confidence 789999999999998888877643
No 313
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=78.93 E-value=12 Score=45.38 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=20.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 429 GILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
-+|..+.|+|||-.+-++..++.+.
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~ 157 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHh
Confidence 4789999999999888888777654
No 314
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=78.90 E-value=14 Score=49.23 Aligned_cols=130 Identities=16% Similarity=0.158 Sum_probs=72.4
Q ss_pred CCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCce
Q 001197 405 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA 484 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~ 484 (1125)
|..|-+-|.++|..++. .+.-.+|-...|+|||.+. ..+..+++.. ...+++++|+..... .+..-.
T Consensus 344 g~~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~l-~~~~~~~e~~--G~~V~~~ApTGkAA~---~L~e~t---- 410 (988)
T PRK13889 344 GLVLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAML-GVAREAWEAA--GYEVRGAALSGIAAE---NLEGGS---- 410 (988)
T ss_pred CCCCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHH-HHHHHHHHHc--CCeEEEecCcHHHHH---HHhhcc----
Confidence 45799999999987774 1223578888999999864 4444444432 235777888754322 121100
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHcc-ccceEEE
Q 001197 485 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-QIQRRLL 563 (1125)
Q Consensus 485 vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l-~s~~RLl 563 (1125)
|.. .+ .+ ..+.. .| .... ......++|||||+-.+... .+...+... ....+++
T Consensus 411 -----Gi~-a~-TI-~sll~---~~----------~~~~--~~l~~~~vlIVDEASMv~~~--~m~~LL~~a~~~garvV 465 (988)
T PRK13889 411 -----GIA-SR-TI-ASLEH---GW----------GQGR--DLLTSRDVLVIDEAGMVGTR--QLERVLSHAADAGAKVV 465 (988)
T ss_pred -----Ccc-hh-hH-HHHHh---hh----------cccc--cccccCcEEEEECcccCCHH--HHHHHHHhhhhCCCEEE
Confidence 100 00 00 00000 00 0000 01124579999999987543 334444433 5678999
Q ss_pred eecCCCCCC
Q 001197 564 LTGTPIQNS 572 (1125)
Q Consensus 564 LTGTPlqN~ 572 (1125)
|.|=|-|-.
T Consensus 466 LVGD~~QLp 474 (988)
T PRK13889 466 LVGDPQQLQ 474 (988)
T ss_pred EECCHHHcC
Confidence 999886654
No 315
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=78.63 E-value=14 Score=44.98 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhccCC--Ce-EEEcCCCchHHHHHHHHHHHHHHc
Q 001197 412 QLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 412 Q~egv~wml~l~~~~~--~G-ILADEMGLGKTiqaIali~~L~e~ 453 (1125)
|...+.++...+..+. +. |+..+.|+|||..|.+++..+...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 4455666665554432 33 679999999999999999887653
No 316
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=78.00 E-value=14 Score=44.77 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=21.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 428 NGILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 428 ~GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
..+++...|.|||.++..++.++...
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 34678999999999998888877653
No 317
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=76.97 E-value=15 Score=46.41 Aligned_cols=145 Identities=13% Similarity=0.160 Sum_probs=77.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-ccHHH----HHHHHHhhCCCceEEEEcCChhHHHHHHHHHH
Q 001197 429 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPN----WINEFSTWAPSIAAVVYDGRPDERKAMREEFF 503 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-sll~q----W~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~ 503 (1125)
.+..-+==-|||....++|..++.... .-.+++++|- .+... -..-+++|+|...+....|.. + .-.+
T Consensus 257 tVflVPRR~GKTwivv~iI~~ll~s~~-Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~-----I-~i~f 329 (738)
T PHA03368 257 TVFLVPRRHGKTWFLVPLIALALATFR-GIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGET-----I-SFSF 329 (738)
T ss_pred eEEEecccCCchhhHHHHHHHHHHhCC-CCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcE-----E-EEEe
Confidence 456667788999887777776654321 2357888886 33333 444456788764443334421 1 0001
Q ss_pred hhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHcc--ccceEEEeecCC-----------CC
Q 001197 504 SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY--QIQRRLLLTGTP-----------IQ 570 (1125)
Q Consensus 504 ~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l--~s~~RLlLTGTP-----------lq 570 (1125)
...++-.+...|- .....+....++++||||||-|+.. .+...+-.+ .....|.+|-|- +.
T Consensus 330 ~nG~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~~--al~~ilp~l~~~n~k~I~ISS~Ns~~~sTSFL~nLk 403 (738)
T PHA03368 330 PDGSRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRPD--AVQTIMGFLNQTNCKIIFVSSTNTGKASTSFLYNLK 403 (738)
T ss_pred cCCCccEEEEEec----cCCCCccCCcccEEEEechhhCCHH--HHHHHHHHHhccCccEEEEecCCCCccchHHHHhhc
Confidence 1101112333211 2223456668999999999999763 333333111 344556666442 33
Q ss_pred CChHHHHHHhhccCCC
Q 001197 571 NSLQELWSLLNFLLPT 586 (1125)
Q Consensus 571 N~l~EL~sLL~fL~P~ 586 (1125)
|...+|.+.+.|+.++
T Consensus 404 ~a~~~lLNVVsYvCde 419 (738)
T PHA03368 404 GAADELLNVVTYICDE 419 (738)
T ss_pred CchhhheeeEEEEChh
Confidence 4445555555666443
No 318
>CHL00095 clpC Clp protease ATP binding subunit
Probab=76.92 E-value=10 Score=49.77 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 001197 409 RAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 409 rpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e 452 (1125)
|+.+++-+--++... ...|-||..+.|+|||..+-+++..+..
T Consensus 184 r~~ei~~~~~~L~r~-~~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 184 REKEIERVIQILGRR-TKNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred cHHHHHHHHHHHccc-ccCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 555554443333222 2346699999999999998877766543
No 319
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=76.59 E-value=34 Score=42.48 Aligned_cols=28 Identities=21% Similarity=0.116 Sum_probs=20.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
+...+|....|.|||..+..++..+...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3334567889999999988877766553
No 320
>PRK10865 protein disaggregation chaperone; Provisional
Probab=76.29 E-value=9.7 Score=50.10 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=26.6
Q ss_pred HHHHHHhh--ccCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 001197 416 LQWMLSLF--NNNLNGILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 416 v~wml~l~--~~~~~GILADEMGLGKTiqaIali~~L~e 452 (1125)
+..|+..+ ....|.||..+.|+|||..+-+++..+..
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 66666532 23456799999999999998877766543
No 321
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=75.91 E-value=14 Score=41.31 Aligned_cols=52 Identities=13% Similarity=0.040 Sum_probs=33.8
Q ss_pred hccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHH
Q 001197 423 FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 476 (1125)
Q Consensus 423 ~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef 476 (1125)
+..+.-.+|+...|+|||..++.++..+.... ..+++++.--....++...+
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISLEEPVVRTARRL 78 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEcccCHHHHHHHH
Confidence 33444568899999999999998887765432 24677776543333433333
No 322
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=75.47 E-value=18 Score=45.64 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=19.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 001197 429 GILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e 452 (1125)
-+|....|+|||-.+.++..++..
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~ 340 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARR 340 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 467899999999888888777665
No 323
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=75.34 E-value=4.4 Score=44.69 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=15.5
Q ss_pred CeEEEcCCCchHHHHHHHHH
Q 001197 428 NGILADEMGLGKTIQTIALI 447 (1125)
Q Consensus 428 ~GILADEMGLGKTiqaIali 447 (1125)
+.||..+.|+|||..|-.++
T Consensus 52 h~lf~GPPG~GKTTLA~IIA 71 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIA 71 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHH
Confidence 56999999999996664433
No 324
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=75.32 E-value=8.5 Score=40.82 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=38.2
Q ss_pred HHhhhccCeeEEEEcCCcccCCh----hhHHHHHHHccccceEEEeecCCCCCChHHHHHHhhcc
Q 001197 523 RQYLKKVQWIYMIVDEGHRLKNH----ECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFL 583 (1125)
Q Consensus 523 ~~~L~ki~w~~VIIDEAHriKN~----~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL 583 (1125)
...+..-.|++||+||.-..-+. ...+...|..-+..--++|||.- -+.+|..+.+++
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~---~p~~l~e~AD~V 151 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRG---CPQDLLELADLV 151 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCC---CCHHHHHhCcee
Confidence 34556678999999998765432 23455566555666689999984 455565555544
No 325
>PTZ00293 thymidine kinase; Provisional
Probab=75.28 E-value=23 Score=38.82 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=24.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 466 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~ 466 (1125)
++..+||+|||..-|-.+..+... ..+++++-|.
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~a---g~kv~~~kp~ 41 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYS---EKKCVVIKYS 41 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHc---CCceEEEEec
Confidence 567899999997777665544332 3578888885
No 326
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=75.18 E-value=9.6 Score=45.83 Aligned_cols=40 Identities=30% Similarity=0.253 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHH
Q 001197 410 AYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAY 449 (1125)
Q Consensus 410 pYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~ 449 (1125)
.-++..+..++....++.|.|+-.+.|+|||-.+.++..+
T Consensus 193 r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 193 RQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 4455556666666778999999999999999888877655
No 327
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=75.16 E-value=11 Score=49.73 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=27.1
Q ss_pred HHHHHHHhhc--cCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 001197 415 GLQWMLSLFN--NNLNGILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 415 gv~wml~l~~--~~~~GILADEMGLGKTiqaIali~~L~e 452 (1125)
-+.+++.... ...|.||..+.|.|||..+-+++..+..
T Consensus 181 ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 181 EIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3666665432 3456789999999999998877765543
No 328
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=75.01 E-value=16 Score=38.32 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=36.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHcc-------CCCCCEEEEcCcccHHHHHHHHHhhC
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLENK-------GVTGPHVIVAPKAVLPNWINEFSTWA 480 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e~~-------~~~gp~LIVvP~sll~qW~~Ef~k~~ 480 (1125)
+.-++++.+.|.|||..++.++..+.... ...+++|+|..-....++..-+....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 34468899999999999999988776421 13467888887766667776666655
No 329
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=74.92 E-value=5.3 Score=49.59 Aligned_cols=131 Identities=18% Similarity=0.181 Sum_probs=68.4
Q ss_pred hccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-----ccHHHHHHHHHhhCCCceEEEEcCChhHHHH
Q 001197 423 FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-----AVLPNWINEFSTWAPSIAAVVYDGRPDERKA 497 (1125)
Q Consensus 423 ~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-----sll~qW~~Ef~k~~p~~~vivy~G~~~~R~~ 497 (1125)
+.++..+.| -+=--|||...+++|+.++..-..- .+..|+-. .+..--...+.+|+|.-.++.-.|..-.
T Consensus 200 FKQkaTVFL-VPRRHGKTWf~VpiIsllL~s~~gI-~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~--- 274 (668)
T PHA03372 200 FKQKATVFL-VPRRHGKTWFIIPIISFLLKNIIGI-SIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVIS--- 274 (668)
T ss_pred hhccceEEE-ecccCCceehHHHHHHHHHHhhcCc-eEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEE---
Confidence 344444444 3567899999999998887732211 35566543 2333345667899997654332221000
Q ss_pred HHHHHHhhcCCccEEEec-HHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHccccceEEEeecC
Q 001197 498 MREEFFSERGRFNVLITH-YDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGT 567 (1125)
Q Consensus 498 l~~~~~~~~~~fdVvITT-Ye~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l~s~~RLlLTGT 567 (1125)
+..+..+..++..| ++ ...++.-.|++++|||||-++...-...--+..-.....+.+|-|
T Consensus 275 ----~s~pg~Kst~~fasc~n-----~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 275 ----IDHRGAKSTALFASCYN-----TNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred ----EecCCCcceeeehhhcc-----CccccCCCCCEEEEehhhccCHHHHHHhhhhhcccCceEEEEeCC
Confidence 00000111122222 22 234666789999999999997532111111122245556666644
No 330
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=74.81 E-value=44 Score=38.03 Aligned_cols=124 Identities=14% Similarity=0.163 Sum_probs=63.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcC-c---ccHHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHH
Q 001197 427 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-K---AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEF 502 (1125)
Q Consensus 427 ~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP-~---sll~qW~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~ 502 (1125)
....+....|+|||.....++..+... ...+.+|.- . ..+.||.......
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~ri~~~~ql~~~~~~~----------------------- 129 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQDYVKTI----------------------- 129 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHHHhhhc-----------------------
Confidence 344677889999998877666665432 224444443 2 3566665433321
Q ss_pred HhhcCCccEEE-ecHHHHHHhHHhhhc-cCeeEEEEcCCcccCChhhH---HHHHHHcccc-ceEEEeecCCCCCChHHH
Q 001197 503 FSERGRFNVLI-THYDLIMRDRQYLKK-VQWIYMIVDEGHRLKNHECA---LAKTISGYQI-QRRLLLTGTPIQNSLQEL 576 (1125)
Q Consensus 503 ~~~~~~fdVvI-TTYe~l~kd~~~L~k-i~w~~VIIDEAHriKN~~Sk---lskaL~~l~s-~~RLlLTGTPlqN~l~EL 576 (1125)
.+.++. .+.+.+......+.. .++++||||-+=+.-..... +.+.+..... ...|.|++|--.+...+.
T Consensus 130 -----~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~ 204 (270)
T PRK06731 130 -----GFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 204 (270)
T ss_pred -----CceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH
Confidence 112221 122223222233333 36899999988765332222 2222222222 335668888666666555
Q ss_pred HHHhh
Q 001197 577 WSLLN 581 (1125)
Q Consensus 577 ~sLL~ 581 (1125)
...++
T Consensus 205 ~~~f~ 209 (270)
T PRK06731 205 ITNFK 209 (270)
T ss_pred HHHhC
Confidence 55444
No 331
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=74.66 E-value=22 Score=42.99 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=33.1
Q ss_pred hhccCeeEEEEcCCcccCChhh---HHHHHHHcc----ccceEEEeecCCCCCChHHHHHHhhcc
Q 001197 526 LKKVQWIYMIVDEGHRLKNHEC---ALAKTISGY----QIQRRLLLTGTPIQNSLQELWSLLNFL 583 (1125)
Q Consensus 526 L~ki~w~~VIIDEAHriKN~~S---klskaL~~l----~s~~RLlLTGTPlqN~l~EL~sLL~fL 583 (1125)
+....+++||||=+-+.-.... .+...+... +....|.|++|--+..+.+....+..+
T Consensus 295 l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~ 359 (432)
T PRK12724 295 LARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESL 359 (432)
T ss_pred HHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCC
Confidence 3345788999997665522222 222222222 335678889997666666666555444
No 332
>PRK14873 primosome assembly protein PriA; Provisional
Probab=74.57 E-value=13 Score=47.39 Aligned_cols=79 Identities=15% Similarity=0.070 Sum_probs=68.0
Q ss_pred hcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhC-C-CeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEee
Q 001197 715 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN-D-FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 792 (1125)
Q Consensus 715 ~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~-g-i~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLS 792 (1125)
.|||-+.+.+++......|..+||...-......+...|..+ | ..+..+|+.++..+|.........+... +++-
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~---IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR---VVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc---EEEE
Confidence 589999999999999999999999999999888888888654 3 6799999999999999999998887655 4666
Q ss_pred cccc
Q 001197 793 TRAG 796 (1125)
Q Consensus 793 TrAG 796 (1125)
|+++
T Consensus 247 tRSA 250 (665)
T PRK14873 247 TRSA 250 (665)
T ss_pred ccee
Confidence 6664
No 333
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=74.50 E-value=14 Score=45.34 Aligned_cols=57 Identities=19% Similarity=0.131 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhc-cC----CCeEEEcCCCchHHHHHHHHHHHHHHccCCCCC-EEEEcCc
Q 001197 410 AYQLEGLQWMLSLFN-NN----LNGILADEMGLGKTIQTIALIAYLLENKGVTGP-HVIVAPK 466 (1125)
Q Consensus 410 pYQ~egv~wml~l~~-~~----~~GILADEMGLGKTiqaIali~~L~e~~~~~gp-~LIVvP~ 466 (1125)
|+|.-.+..++.... .+ ..++|.-.=|-|||..+.+++.|.+-..+..++ ++++++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~ 63 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANT 63 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCC
Confidence 678877766664311 11 124667788999998887777766543334444 4555554
No 334
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=74.35 E-value=53 Score=38.36 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=34.9
Q ss_pred ccHHHHHHHHHHHHhhccCCCe-EEEcCCCchHHHHHHHHHHHHHHc
Q 001197 408 LRAYQLEGLQWMLSLFNNNLNG-ILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 408 LrpYQ~egv~wml~l~~~~~~G-ILADEMGLGKTiqaIali~~L~e~ 453 (1125)
++|+|...-.-+...+..-.++ ++..+.|+|||..|..++..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 4677777777777665444444 579999999999999999887754
No 335
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=74.11 E-value=7.7 Score=49.67 Aligned_cols=110 Identities=19% Similarity=0.193 Sum_probs=87.3
Q ss_pred EEecCCHHHHHHHHHHHhhcccccccCCCccchHHHHHHHHHHhhCCCcccccccchhhHHHHHhhcchHHHHHHHhHHh
Q 001197 650 LKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKL 729 (1125)
Q Consensus 650 i~~~ms~~Q~~lY~~i~~~~~~~l~~~~~k~~~l~n~~~qLRkicnhP~L~~~~~~~~~~~~li~~S~Kle~L~~lL~kl 729 (1125)
.+..++..|...+..+.... -+.+++|..+. ..|||.+...+++.+.
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~~-----------------------~~~~~~Ll~Gv----------TGSGKTEvYl~~i~~~ 241 (730)
T COG1198 195 EWLALNQEQQAAVEAILSSL-----------------------GGFAPFLLDGV----------TGSGKTEVYLEAIAKV 241 (730)
T ss_pred cccccCHHHHHHHHHHHHhc-----------------------ccccceeEeCC----------CCCcHHHHHHHHHHHH
Confidence 34567888888888776431 23456666553 5799999999999999
Q ss_pred hhCCCEEEEEeccchHHHHHHHHHHhC-CCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccc
Q 001197 730 RKSGHRVLLFSQMTRLMDILEIYLKLN-DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 795 (1125)
Q Consensus 730 ~~~g~KVLIFsq~t~~ldiLe~~L~~~-gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrA 795 (1125)
.+.|+.+||-..-......+...|..+ |.++..+|++.+..+|.....+...+... | ++-|++
T Consensus 242 L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~--v-VIGtRS 305 (730)
T COG1198 242 LAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEAR--V-VIGTRS 305 (730)
T ss_pred HHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCce--E-EEEech
Confidence 999999999999998888887777655 78999999999999999999999987754 4 444444
No 336
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=73.57 E-value=11 Score=45.67 Aligned_cols=25 Identities=32% Similarity=0.165 Sum_probs=20.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 429 GILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
.+|..+.|+|||-.+-++...+...
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~ 168 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRES 168 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4688999999999888888777653
No 337
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.38 E-value=48 Score=42.12 Aligned_cols=54 Identities=22% Similarity=0.218 Sum_probs=31.7
Q ss_pred CeeEEEEcCCcccCCh-hhHHHHHHHccccceEEEeecCCCCCChHHHHHHhhcc
Q 001197 530 QWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFL 583 (1125)
Q Consensus 530 ~w~~VIIDEAHriKN~-~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL 583 (1125)
.+.+|||||+|++... ...+-+.|...+...+++|+.|-...-+.-|-+-+..+
T Consensus 121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv 175 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIF 175 (614)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhhee
Confidence 6789999999999542 22344455555566677777764333333344433333
No 338
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=73.35 E-value=3.7 Score=44.51 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=27.6
Q ss_pred CeeEEEEcCCcccCChhhHHHHHHHccccceEEEeecCCCCCChH
Q 001197 530 QWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQ 574 (1125)
Q Consensus 530 ~w~~VIIDEAHriKN~~SklskaL~~l~s~~RLlLTGTPlqN~l~ 574 (1125)
..+++||||++.+-...-. .+........++|-|=|.|-...
T Consensus 62 ~~~~liiDE~~~~~~g~l~---~l~~~~~~~~~~l~GDp~Q~~~~ 103 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPGYLL---LLLSLSPAKNVILFGDPLQIPYI 103 (234)
T ss_pred cCCEEEEeccccCChHHHH---HHHhhccCcceEEEECchhccCC
Confidence 5789999999987542211 23333344568888999886543
No 339
>PRK13342 recombination factor protein RarA; Reviewed
Probab=73.10 E-value=20 Score=43.05 Aligned_cols=22 Identities=27% Similarity=0.185 Sum_probs=17.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHH
Q 001197 428 NGILADEMGLGKTIQTIALIAY 449 (1125)
Q Consensus 428 ~GILADEMGLGKTiqaIali~~ 449 (1125)
+.||..+.|+|||..+-++...
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5688999999999888766543
No 340
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=72.71 E-value=5.2 Score=42.48 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=23.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 466 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~ 466 (1125)
++..+|++|||...|..+..+... ..+++++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~---~~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIA---GKKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---T-EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhC---CCeEEEEEec
Confidence 456799999999888777655443 3467777774
No 341
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=72.61 E-value=36 Score=36.71 Aligned_cols=141 Identities=11% Similarity=0.090 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHH-HHHHH--hhCCCceEEEEcCChhHHHHHHHHH
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW-INEFS--TWAPSIAAVVYDGRPDERKAMREEF 502 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW-~~Ef~--k~~p~~~vivy~G~~~~R~~l~~~~ 502 (1125)
..+.++.-..|.|||-.|++++......+ .+++||== +-..| ..|.. +..|.+.+..+.........
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G---~~V~ivQF--lKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~----- 91 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHG---KKVGVVQF--IKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQ----- 91 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCC---CeEEEEEE--ecCCCccCHHHHHhcCCCcEEEECCCCCcccCC-----
Confidence 34557788999999999999987766543 35666531 11112 12222 22233333322211000000
Q ss_pred HhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCCh----hhHHHHHHHccccceEEEeecCCCCCChHHHHH
Q 001197 503 FSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNH----ECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 578 (1125)
Q Consensus 503 ~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~----~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~s 578 (1125)
..-.-.-.--+.+..-...+..-.|++||+||.-..-+. ...+...|..-+..--++|||- +-..+|..
T Consensus 92 ----~~~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR---~~p~~Lie 164 (191)
T PRK05986 92 ----DRERDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGR---GAPRELIE 164 (191)
T ss_pred ----CcHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECC---CCCHHHHH
Confidence 000000000011222234566678999999998765442 3345555555455668999997 44555555
Q ss_pred Hhhcc
Q 001197 579 LLNFL 583 (1125)
Q Consensus 579 LL~fL 583 (1125)
+.+++
T Consensus 165 ~ADlV 169 (191)
T PRK05986 165 AADLV 169 (191)
T ss_pred hCchh
Confidence 55444
No 342
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=72.22 E-value=25 Score=41.67 Aligned_cols=48 Identities=23% Similarity=0.189 Sum_probs=34.2
Q ss_pred CccHHHHHHHHHHHHhh-c--cCCCeEEEcCCCchHHHHHHHHHHHHHHcc
Q 001197 407 ELRAYQLEGLQWMLSLF-N--NNLNGILADEMGLGKTIQTIALIAYLLENK 454 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~-~--~~~~GILADEMGLGKTiqaIali~~L~e~~ 454 (1125)
.-|+-|++.+...+.-. . ...|.++...+|+|||.++--++..+.+..
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 56777887776555432 1 234578899999999999988887776653
No 343
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=71.31 E-value=19 Score=42.80 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=15.8
Q ss_pred CeEEEcCCCchHHHHHHHHH
Q 001197 428 NGILADEMGLGKTIQTIALI 447 (1125)
Q Consensus 428 ~GILADEMGLGKTiqaIali 447 (1125)
+-||..+.|+|||-.|-.+.
T Consensus 50 SmIl~GPPG~GKTTlA~liA 69 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIA 69 (436)
T ss_pred eeEEECCCCCCHHHHHHHHH
Confidence 45999999999997764444
No 344
>PRK11823 DNA repair protein RadA; Provisional
Probab=71.26 E-value=15 Score=44.73 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=40.0
Q ss_pred HHHHHHHHh-hccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhh
Q 001197 414 EGLQWMLSL-FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 479 (1125)
Q Consensus 414 egv~wml~l-~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~ 479 (1125)
.++..++.- +..+.-.+|.-++|.|||..++.++..+... .+++|.|.-.....++.....++
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~Ees~~qi~~ra~rl 130 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGEESASQIKLRAERL 130 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccccHHHHHHHHHHc
Confidence 456666531 2222234789999999999998888766532 35778887655555655444443
No 345
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=71.18 E-value=45 Score=34.56 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=20.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~ 453 (1125)
++..+.|.|||..+..++..+...
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC
Confidence 567899999999998888777654
No 346
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=71.17 E-value=12 Score=42.16 Aligned_cols=62 Identities=26% Similarity=0.328 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHH
Q 001197 412 QLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 476 (1125)
Q Consensus 412 Q~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef 476 (1125)
++..+.-....+.++.|.+|-...|.|||..++|+...+.. . ..+++++.-+.++.+++..+
T Consensus 91 ~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~-~--g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 91 ALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLK-A--GISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred HHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH-c--CCeEEEEEHHHHHHHHHHHH
Confidence 33334444445556778889999999999999999998883 3 23456654445554444443
No 347
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=71.08 E-value=17 Score=46.14 Aligned_cols=96 Identities=21% Similarity=0.175 Sum_probs=64.9
Q ss_pred hcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHH----HHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEE
Q 001197 715 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEI----YLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 790 (1125)
Q Consensus 715 ~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~----~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfL 790 (1125)
.|||-....-.+-.....|.+++|.++....+..+.. ++...|+++..++|+++..+|..++....++..+ ++
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~---Ii 342 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH---LV 342 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC---EE
Confidence 4566543322222223468899999998876665544 4444589999999999999999999999887655 45
Q ss_pred eeccc-cccccCCCCCCEEEEeCC
Q 001197 791 LSTRA-GGLGLNLQTADTVIIFDS 813 (1125)
Q Consensus 791 LSTrA-GG~GLNLq~Ad~VIi~D~ 813 (1125)
++|.+ .-..+.+.....||+=+.
T Consensus 343 VgT~~ll~~~~~~~~l~lvVIDEa 366 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIIDEQ 366 (630)
T ss_pred EecHHHHhccccccccceEEEech
Confidence 55544 444567777777776443
No 348
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=70.95 E-value=44 Score=36.59 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=25.5
Q ss_pred CeeEEEEcCCcccCChhh---HHHHHHHcc-ccceEEEeec
Q 001197 530 QWIYMIVDEGHRLKNHEC---ALAKTISGY-QIQRRLLLTG 566 (1125)
Q Consensus 530 ~w~~VIIDEAHriKN~~S---klskaL~~l-~s~~RLlLTG 566 (1125)
..+++|||..|.+.+... .++..+..+ .....+++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 678999999999988642 344444333 4556777776
No 349
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=70.60 E-value=18 Score=39.50 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=29.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 466 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~ 466 (1125)
+.-.+|+...|+|||..++.++....... ..++|+++.-
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~E 51 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSLE 51 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeCC
Confidence 33358899999999999998887776542 3478888843
No 350
>PRK10263 DNA translocase FtsK; Provisional
Probab=70.51 E-value=13 Score=50.16 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=28.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHcc-CCCCCEEEEcCcc
Q 001197 428 NGILADEMGLGKTIQTIALIAYLLENK-GVTGPHVIVAPKA 467 (1125)
Q Consensus 428 ~GILADEMGLGKTiqaIali~~L~e~~-~~~gp~LIVvP~s 467 (1125)
+.++|.-+|+|||...-++|..+.... ...-.+++|=|+.
T Consensus 1012 HLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~ 1052 (1355)
T PRK10263 1012 HLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKM 1052 (1355)
T ss_pred cEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCc
Confidence 568899999999999888887765532 2222455666774
No 351
>PHA02244 ATPase-like protein
Probab=69.55 E-value=38 Score=40.30 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=25.9
Q ss_pred ccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEc
Q 001197 424 NNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 464 (1125)
Q Consensus 424 ~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVv 464 (1125)
..+.+.+|..++|+|||..+-++...+ ..|++.|.
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~l------g~pfv~In 151 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEAL------DLDFYFMN 151 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 457788999999999998887776542 23665553
No 352
>PRK06904 replicative DNA helicase; Validated
Probab=69.02 E-value=78 Score=38.95 Aligned_cols=128 Identities=10% Similarity=0.054 Sum_probs=67.1
Q ss_pred HHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceEE-EEcC---
Q 001197 415 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAV-VYDG--- 490 (1125)
Q Consensus 415 gv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vi-vy~G--- 490 (1125)
++.-+..-+..+.=.|||.-+|+|||.-++.++...... ...|+++++.--...++..-+-.....+... +..|
T Consensus 210 ~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~--~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~~~i~~g~~l 287 (472)
T PRK06904 210 DLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA--SEKPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQNL 287 (472)
T ss_pred HHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--cCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHhccCCCC
Confidence 455454434334445889999999999888777665432 2358899888766677665544332222111 1123
Q ss_pred ChhHHHHHHHHHHhhcCCccEEE-----ecHHHHHHhHHhh-hcc-CeeEEEEcCCcccCC
Q 001197 491 RPDERKAMREEFFSERGRFNVLI-----THYDLIMRDRQYL-KKV-QWIYMIVDEGHRLKN 544 (1125)
Q Consensus 491 ~~~~R~~l~~~~~~~~~~fdVvI-----TTYe~l~kd~~~L-~ki-~w~~VIIDEAHriKN 544 (1125)
+..+...+......-....++.| .|...+......+ ... ..++||||=-|.|..
T Consensus 288 ~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 288 DQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 12222222211110001233444 2344444333322 222 478999998888753
No 353
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=68.73 E-value=20 Score=46.20 Aligned_cols=68 Identities=19% Similarity=0.098 Sum_probs=46.3
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccC-CCCCEEEEcCc-ccHHHHHHHHHhhC
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPK-AVLPNWINEFSTWA 480 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~-~~gp~LIVvP~-sll~qW~~Ef~k~~ 480 (1125)
.|-|-|.++|.+ .....++-...|+|||.+.+.-+++|+...+ ....+|+|+.+ ........-+.+..
T Consensus 4 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 4 GLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred ccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 588999999852 1234566667999999999999999998643 23457887765 33444444444443
No 354
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=68.29 E-value=22 Score=46.06 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=21.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e 452 (1125)
..|.||..+.|+|||..+-++...+..
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~ 233 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 456799999999999998777655443
No 355
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=67.99 E-value=34 Score=39.38 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHH
Q 001197 430 ILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e 452 (1125)
++..+-|.|||..+.+++..++.
T Consensus 30 Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 30 IIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred EeECCCCCCHHHHHHHHHHHHcC
Confidence 78999999999999999887754
No 356
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.95 E-value=52 Score=38.69 Aligned_cols=41 Identities=22% Similarity=0.184 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhccC---CCeEEEcCCCchHHHHHHHHHHHHHH
Q 001197 412 QLEGLQWMLSLFNNN---LNGILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 412 Q~egv~wml~l~~~~---~~GILADEMGLGKTiqaIali~~L~e 452 (1125)
|...+..+.....++ .+-++..+.|+|||..+-+++..+..
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 22 QSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 333444444444333 23468999999999888887666543
No 357
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=67.86 E-value=28 Score=40.57 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=31.1
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHH
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLL 451 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~ 451 (1125)
+.+-+.|.+.+..++. .+.+.+++..+|+|||-..-+++.++.
T Consensus 131 g~~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 131 GIMTAAQREAIIAAVR---AHRNILVIGGTGSGKTTLVNAIINEMV 173 (319)
T ss_pred CCCCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 4566777766654443 577889999999999977767766553
No 358
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=67.72 E-value=33 Score=46.17 Aligned_cols=127 Identities=18% Similarity=0.113 Sum_probs=72.3
Q ss_pred CCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCce
Q 001197 405 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA 484 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~ 484 (1125)
+..|-+-|.+++..+.. .+.-++|-..-|+|||.+.-++... ++.. ...++.++|+.... ..+..-+ ++.
T Consensus 379 ~~~Ls~eQ~~Av~~i~~---~~r~~~v~G~AGTGKTt~l~~~~~~-~e~~--G~~V~g~ApTgkAA---~~L~e~~-Gi~ 448 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAG---PARIAAVVGRAGAGKTTMMKAAREA-WEAA--GYRVVGGALAGKAA---EGLEKEA-GIQ 448 (1102)
T ss_pred CCCCCHHHHHHHHHHhc---cCCeEEEEeCCCCCHHHHHHHHHHH-HHHc--CCeEEEEcCcHHHH---HHHHHhh-CCC
Confidence 35799999999987642 2334577888999999776655543 3332 24677778874432 2222211 111
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHH-HHh---HHhhhccCeeEEEEcCCcccCChhhHHHHHHHcc-ccc
Q 001197 485 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLI-MRD---RQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-QIQ 559 (1125)
Q Consensus 485 vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l-~kd---~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l-~s~ 559 (1125)
. .|...+ ... ...+ ..-++||||||..+-.. .+...+... ...
T Consensus 449 a----------------------------~TIas~ll~~~~~~~~l--~~~~vlVIDEAsMv~~~--~m~~Ll~~~~~~g 496 (1102)
T PRK13826 449 S----------------------------RTLSSWELRWNQGRDQL--DNKTVFVLDEAGMVASR--QMALFVEAVTRAG 496 (1102)
T ss_pred e----------------------------eeHHHHHhhhccCccCC--CCCcEEEEECcccCCHH--HHHHHHHHHHhcC
Confidence 0 011111 000 0011 13469999999987543 334444444 367
Q ss_pred eEEEeecCCCCCCh
Q 001197 560 RRLLLTGTPIQNSL 573 (1125)
Q Consensus 560 ~RLlLTGTPlqN~l 573 (1125)
.+++|.|-|-|-..
T Consensus 497 arvVLVGD~~QL~~ 510 (1102)
T PRK13826 497 AKLVLVGDPEQLQP 510 (1102)
T ss_pred CEEEEECCHHHcCC
Confidence 89999999876543
No 359
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=67.65 E-value=25 Score=43.47 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=21.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLL 451 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~ 451 (1125)
..|.+|..+.|+|||..+-+++..+.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhc
Confidence 45568899999999999888877664
No 360
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=67.11 E-value=33 Score=37.81 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=27.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHc---------cCCCCCEEEEc
Q 001197 428 NGILADEMGLGKTIQTIALIAYLLEN---------KGVTGPHVIVA 464 (1125)
Q Consensus 428 ~GILADEMGLGKTiqaIali~~L~e~---------~~~~gp~LIVv 464 (1125)
=|+|+.+-|+|||..++.++..+..- ....+++|+++
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 36899999999999998887654321 12345778887
No 361
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=66.98 E-value=20 Score=41.91 Aligned_cols=126 Identities=20% Similarity=0.196 Sum_probs=70.4
Q ss_pred CchHHHHHHHHHHHHHHccCC------------CCCEEEEcCcccHHHHHHH---HHhhCCCceEEEEcCChhHHHHHHH
Q 001197 436 GLGKTIQTIALIAYLLENKGV------------TGPHVIVAPKAVLPNWINE---FSTWAPSIAAVVYDGRPDERKAMRE 500 (1125)
Q Consensus 436 GLGKTiqaIali~~L~e~~~~------------~gp~LIVvP~sll~qW~~E---f~k~~p~~~vivy~G~~~~R~~l~~ 500 (1125)
|+|||=.++.++.+|...+.. .+..++|.|.+....--.| +.+.+| +.|++.......-..+
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~-~~V~V~~dR~~~~~~~-- 123 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLP-VPVIVGPDRVAAARAA-- 123 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcC-CcEEEeCcHHHHHHHH--
Confidence 999999999999999876311 1226777787744443333 556667 5555444322222211
Q ss_pred HHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCC----hhhHHHHHHHccccceEEEeecCCCCC
Q 001197 501 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN----HECALAKTISGYQIQRRLLLTGTPIQN 571 (1125)
Q Consensus 501 ~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN----~~SklskaL~~l~s~~RLlLTGTPlqN 571 (1125)
... ..++|||.--..=. .--.-+++.|++|-.+-+.| +...+..-+..+.....+++|+.+-..
T Consensus 124 --~~~-~~~dviilDDGfQh----~~L~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~~l~rAD~vi~~~~~~~~ 191 (326)
T PF02606_consen 124 --LKE-FPADVIILDDGFQH----RRLKRDLDIVLVDADRPFGNGFLLPAGPLREPLSALKRADAVIVTGCDASD 191 (326)
T ss_pred --HHH-CCCCEEEEcCCccc----ccccCCcEEEEEeCCCCCcCCccCCCCcccCChhHhCcccEEEEcCCCcch
Confidence 111 23777765422110 00123677888887666666 333444445555555566777776443
No 362
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=66.87 E-value=33 Score=39.83 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhccCC--Ce-EEEcCCCchHHHHHHHHHHHHHHcc
Q 001197 412 QLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLENK 454 (1125)
Q Consensus 412 Q~egv~wml~l~~~~~--~G-ILADEMGLGKTiqaIali~~L~e~~ 454 (1125)
|..++..+.....++. ++ ++..+.|.||+..|.+++.+++...
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4455555555544442 33 6799999999999999999887653
No 363
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=66.76 E-value=15 Score=41.79 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=18.6
Q ss_pred CeeEEEEcCCcccC-ChhhHHHHHHHcc
Q 001197 530 QWIYMIVDEGHRLK-NHECALAKTISGY 556 (1125)
Q Consensus 530 ~w~~VIIDEAHriK-N~~SklskaL~~l 556 (1125)
.-|+++|||.|++. +-.--++-++..|
T Consensus 103 ~~DVLFIDEIHrl~~~vEE~LYpaMEDf 130 (332)
T COG2255 103 EGDVLFIDEIHRLSPAVEEVLYPAMEDF 130 (332)
T ss_pred cCCeEEEehhhhcChhHHHHhhhhhhhe
Confidence 45688999999984 3344566666555
No 364
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=66.71 E-value=32 Score=37.92 Aligned_cols=58 Identities=19% Similarity=0.132 Sum_probs=35.8
Q ss_pred HHHHHHHH-hhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHH
Q 001197 414 EGLQWMLS-LFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 474 (1125)
Q Consensus 414 egv~wml~-l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~ 474 (1125)
.++.-++. -+..+...+++.+.|+|||+.++-++...... ..++|+|+-.....+-.+
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs~ee~~~~i~~ 66 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVALEEHPVQVRR 66 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEEeeCCHHHHHH
Confidence 45555443 12233345779999999999998887765543 347788874443333333
No 365
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=66.60 E-value=52 Score=35.75 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=35.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhC
Q 001197 429 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWA 480 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~ 480 (1125)
.+++.+.|+|||..++.++...... ..++++|.......+-...+..+.
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~---g~~~~y~s~e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKN---GEKAMYISLEEREERILGYAKSKG 67 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCHHHHHHHHHHcC
Confidence 3678899999999998887765543 357888887766666666655543
No 366
>CHL00206 ycf2 Ycf2; Provisional
Probab=66.32 E-value=16 Score=51.08 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=30.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHH
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 472 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW 472 (1125)
..|.+|..++|+|||+.|=|++... .-|++-|....++..|
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es------~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS------YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc------CCceEEEEHHHHhhcc
Confidence 3455779999999999988877532 3477777766777665
No 367
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=65.99 E-value=29 Score=37.55 Aligned_cols=108 Identities=15% Similarity=0.061 Sum_probs=57.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRF 509 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~~~~~f 509 (1125)
++...|++|||..-|-.+..... ...+++|..|.. ...+..-.+....|... .
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~---~g~~v~vfkp~i---------D~R~~~~~V~Sr~G~~~---------------~ 60 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKE---AGMKVLVFKPAI---------DTRYGVGKVSSRIGLSS---------------E 60 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHH---cCCeEEEEeccc---------ccccccceeeeccCCcc---------------c
Confidence 46789999999865554443333 334778887742 22222223333333221 1
Q ss_pred cEEEecHHHHHHhHHhhhc-cCeeEEEEcCCcccCChhhHHHHHHHcccc--ceEEEeecC
Q 001197 510 NVLITHYDLIMRDRQYLKK-VQWIYMIVDEGHRLKNHECALAKTISGYQI--QRRLLLTGT 567 (1125)
Q Consensus 510 dVvITTYe~l~kd~~~L~k-i~w~~VIIDEAHriKN~~SklskaL~~l~s--~~RLlLTGT 567 (1125)
-++|-+-.-+......... ...++|+|||||-+.. .+...|..+.. ..++++.|.
T Consensus 61 A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 61 AVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred ceecCChHHHHHHHHhcccCCCcCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 1333343334343333222 2268999999999865 33444444422 456666664
No 368
>PRK10867 signal recognition particle protein; Provisional
Probab=65.95 E-value=51 Score=40.02 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~ 453 (1125)
+++...|.|||.++.-++.++...
T Consensus 104 ~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 104 MMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHh
Confidence 568899999999999998887765
No 369
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=65.93 E-value=14 Score=41.51 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEc
Q 001197 410 AYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 464 (1125)
Q Consensus 410 pYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVv 464 (1125)
|+....+..++.....+.+.+|..+.|+|||..|.++...+ ..|++.|+
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR------DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 45556666666666678888999999999999998876532 34676664
No 370
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=65.87 E-value=30 Score=38.17 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=29.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccH
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL 469 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll 469 (1125)
+.-.++..+.|+|||..++.++..+.... .+++.|+.....
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~e~~~ 64 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSTQLTT 64 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeCCCCH
Confidence 44457899999999999988887765532 466777754333
No 371
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=65.80 E-value=12 Score=39.75 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=31.6
Q ss_pred ccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHh
Q 001197 424 NNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST 478 (1125)
Q Consensus 424 ~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k 478 (1125)
.++.|-+|..++|+|||..|.+++..+...+ .+++++. ...+..++..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g---~~v~f~~----~~~L~~~l~~ 92 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG---YSVLFIT----ASDLLDELKQ 92 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEE----HHHHHHHHHC
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC---cceeEee----cCceeccccc
Confidence 4566778899999999999999998888732 3455553 3344455543
No 372
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=65.77 E-value=31 Score=38.19 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=26.7
Q ss_pred CCchHHHHHHHHHHHHHHccCCCCCEEEEc--CcccHHHHHH
Q 001197 435 MGLGKTIQTIALIAYLLENKGVTGPHVIVA--PKAVLPNWIN 474 (1125)
Q Consensus 435 MGLGKTiqaIali~~L~e~~~~~gp~LIVv--P~sll~qW~~ 474 (1125)
=|.|||..++.+..++...+ .+++||= |...+..|..
T Consensus 11 GGvGKTT~a~nLA~~la~~G---~~VlliD~DpQ~s~~~w~~ 49 (231)
T PRK13849 11 GGAGKTTALMGLCAALASDG---KRVALFEADENRPLTRWKE 49 (231)
T ss_pred CCccHHHHHHHHHHHHHhCC---CcEEEEeCCCCCCHHHHHH
Confidence 38999999999988877642 2555553 6677788865
No 373
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=65.75 E-value=11 Score=42.40 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=17.1
Q ss_pred HHHHHHHhhccCCCeEEEcCCCchHHHHH
Q 001197 415 GLQWMLSLFNNNLNGILADEMGLGKTIQT 443 (1125)
Q Consensus 415 gv~wml~l~~~~~~GILADEMGLGKTiqa 443 (1125)
++.+|+. ...+..+++-.+.|.|||..+
T Consensus 6 ~id~~~~-i~~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 6 VVDLFAP-IGKGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred heeeecc-cCCCCEEEEECCCCCCHHHHH
Confidence 3444443 234555666677999999544
No 374
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=65.38 E-value=30 Score=42.59 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=18.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~ 453 (1125)
.|....|.|||.++.-++.++...
T Consensus 260 ~LvGpnGvGKTTTiaKLA~~~~~~ 283 (484)
T PRK06995 260 ALMGPTGVGKTTTTAKLAARCVMR 283 (484)
T ss_pred EEECCCCccHHHHHHHHHHHHHHh
Confidence 467899999999888777766543
No 375
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=65.25 E-value=18 Score=42.07 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=70.1
Q ss_pred HHHHHHHHHHccCCCCCEEEEcCc-ccHHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHH
Q 001197 443 TIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMR 521 (1125)
Q Consensus 443 aIali~~L~e~~~~~gp~LIVvP~-sll~qW~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~k 521 (1125)
...+..++-.......|+||.+|. .++.+...-+++-+|...+...+.....|......+.. +.++++|||-=. -+
T Consensus 291 ~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~--G~~~lLiTTTIL-ER 367 (441)
T COG4098 291 PLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRD--GKITLLITTTIL-ER 367 (441)
T ss_pred CHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHc--CceEEEEEeehh-hc
Confidence 456677776666667899999999 66778888888888988888888877888777766665 889999998421 11
Q ss_pred hHHhhhccCeeEEEEcCCcccCC
Q 001197 522 DRQYLKKVQWIYMIVDEGHRLKN 544 (1125)
Q Consensus 522 d~~~L~ki~w~~VIIDEAHriKN 544 (1125)
- +.--+.++.|++--|++-.
T Consensus 368 G---VTfp~vdV~Vlgaeh~vfT 387 (441)
T COG4098 368 G---VTFPNVDVFVLGAEHRVFT 387 (441)
T ss_pred c---cccccceEEEecCCccccc
Confidence 1 1122577889987777644
No 376
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=65.15 E-value=11 Score=45.17 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=33.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHh
Q 001197 429 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST 478 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k 478 (1125)
-+|+.+.|.|||+.+.|++..... .+--|.|.+|..-|.-|-++
T Consensus 189 lLLfGPpgtGKtmL~~aiAsE~~a------tff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 189 LLLFGPPGTGKTMLAKAIATESGA------TFFNISASSLTSKYVGESEK 232 (428)
T ss_pred hheecCCCCchHHHHHHHHhhhcc------eEeeccHHHhhhhccChHHH
Confidence 368999999999999888865422 46677788888877655544
No 377
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=64.88 E-value=69 Score=37.31 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=22.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 464 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVv 464 (1125)
.|....|.|||.++..++.++... .+.++|+.
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~ 149 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAA 149 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 356799999999988888776543 24555554
No 378
>PRK11054 helD DNA helicase IV; Provisional
Probab=64.48 E-value=16 Score=46.87 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=44.8
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCC-CCCEEEEcCcccHHHHHH
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVAPKAVLPNWIN 474 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~-~gp~LIVvP~sll~qW~~ 474 (1125)
..|.+-|.++|..- ..+.++-...|+|||.+.++-+.||+..... ...+|++|.+....+...
T Consensus 195 ~~L~~~Q~~av~~~------~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~ 258 (684)
T PRK11054 195 SPLNPSQARAVVNG------EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMD 258 (684)
T ss_pred CCCCHHHHHHHhCC------CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHH
Confidence 47999999998521 2233444559999999999999999976533 346888888765554433
No 379
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=63.99 E-value=33 Score=38.57 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=25.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEc
Q 001197 429 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 464 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVv 464 (1125)
.+++-+.|+|||.-++.++...... ..++++|.
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis 71 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASR---GNPVLFVT 71 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEE
Confidence 3779999999999999887765543 34777777
No 380
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=63.86 E-value=37 Score=37.21 Aligned_cols=48 Identities=8% Similarity=0.237 Sum_probs=33.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhh
Q 001197 429 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 479 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~ 479 (1125)
.+++.+.|+|||.-+..++...... ..++++|.-..........+..+
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCCCHHHHHHHHHHC
Confidence 4678999999999999887665443 35777777555555555555554
No 381
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=63.50 E-value=88 Score=36.03 Aligned_cols=150 Identities=11% Similarity=0.052 Sum_probs=74.1
Q ss_pred CccHHHHHHHHHHHHhhccCC--CeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCce
Q 001197 407 ELRAYQLEGLQWMLSLFNNNL--NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA 484 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~--~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~ 484 (1125)
+|...|-..+..+...+.++. +++|-.. |.||+..|..++..++.......+..=.|+. ...+ ...-.|++.
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~--C~~i---~~~~HPD~~ 75 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQKEGVLPCGHCRS--CRLI---EQGEFSDVT 75 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCCCCCCCCCCCCHH--HHHH---hcCCCCCee
Confidence 355667777777776655442 3444333 6899999999988887643211110000111 0000 111234444
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhh----ccCeeEEEEcCCcccCChh-hHHHHHHHccccc
Q 001197 485 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKNHE-CALAKTISGYQIQ 559 (1125)
Q Consensus 485 vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~----ki~w~~VIIDEAHriKN~~-SklskaL~~l~s~ 559 (1125)
++.-.|.. +.-+.++.-...+. .-.|.++|||+||+|.... ..+-+.|..-+..
T Consensus 76 ~i~p~~~~---------------------I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~ 134 (290)
T PRK07276 76 VIEPQGQV---------------------IKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSE 134 (290)
T ss_pred eecCCCCc---------------------CCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCC
Confidence 33222211 12223322222222 1268899999999996422 2344455444444
Q ss_pred eEEEeecCCCCCChHHHHHHhhcc
Q 001197 560 RRLLLTGTPIQNSLQELWSLLNFL 583 (1125)
Q Consensus 560 ~RLlLTGTPlqN~l~EL~sLL~fL 583 (1125)
-.++|+..-...-++-+.|=+..+
T Consensus 135 t~~iL~t~~~~~lLpTI~SRcq~i 158 (290)
T PRK07276 135 IYIFLLTNDENKVLPTIKSRTQIF 158 (290)
T ss_pred eEEEEEECChhhCchHHHHcceee
Confidence 556666554445555565544433
No 382
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=63.05 E-value=31 Score=41.14 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=25.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccH
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL 469 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll 469 (1125)
..+.+|..+.|+|||..|-+++..+ ..+++.+....++
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~------~~~~i~v~~~~l~ 202 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSELV 202 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHh------CCCEEEeehHHHh
Confidence 3456889999999999987776543 2355555443333
No 383
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=62.80 E-value=35 Score=47.55 Aligned_cols=137 Identities=17% Similarity=0.117 Sum_probs=71.9
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHcc-CCCCCEEEEcCcccHHHHHHHHHhhCCCce
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK-GVTGPHVIVAPKAVLPNWINEFSTWAPSIA 484 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~-~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~ 484 (1125)
..|-+-|.+++..++... +.-.+|-...|+|||.+.-+++..+.... .....++.++|+.-.. .++..-
T Consensus 834 ~~Lt~~Qr~Av~~iLts~--dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa---~~L~e~----- 903 (1623)
T PRK14712 834 EKLTSGQRAATRMILETS--DRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAV---GEMRSA----- 903 (1623)
T ss_pred cccCHHHHHHHHHHHhCC--CceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHH---HHHHHh-----
Confidence 378999999998776522 23467788899999988655444332211 1123466788874432 222211
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHccc-cceEEE
Q 001197 485 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ-IQRRLL 563 (1125)
Q Consensus 485 vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l~-s~~RLl 563 (1125)
|-.. .....+... .. .+.. .........+++|||||-.+-+. .+...+..+. ...+++
T Consensus 904 -----Gi~A---~TIasfL~~---~~-------~~~~-~~~~~~~~~~llIVDEASMV~~~--~m~~ll~~~~~~garvV 962 (1623)
T PRK14712 904 -----GVDA---QTLASFLHD---TQ-------LQQR-SGETPDFSNTLFLLDESSMVGNT--DMARAYALIAAGGGRAV 962 (1623)
T ss_pred -----CchH---hhHHHHhcc---cc-------chhh-cccCCCCCCcEEEEEccccccHH--HHHHHHHhhhhCCCEEE
Confidence 1000 000011100 00 0000 00001124579999999988654 2333333333 357899
Q ss_pred eecCCCCCCh
Q 001197 564 LTGTPIQNSL 573 (1125)
Q Consensus 564 LTGTPlqN~l 573 (1125)
|.|=+-|...
T Consensus 963 LVGD~~QL~s 972 (1623)
T PRK14712 963 ASGDTDQLQA 972 (1623)
T ss_pred EEcchhhcCC
Confidence 9998877643
No 384
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=62.77 E-value=9.1 Score=47.14 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=25.4
Q ss_pred ccCeeEEEEcCCcccCChhhHHHHHH-Hcc--ccceEEEeecCC
Q 001197 528 KVQWIYMIVDEGHRLKNHECALAKTI-SGY--QIQRRLLLTGTP 568 (1125)
Q Consensus 528 ki~w~~VIIDEAHriKN~~SklskaL-~~l--~s~~RLlLTGTP 568 (1125)
..++.+.||||+|.+.. ..+.+| +.+ +..|.+++=+|-
T Consensus 117 ~~ryKVyiIDEvHMLS~---~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 117 EGRYKVYIIDEVHMLSK---QAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred cccceEEEEecHHhhhH---HHHHHHhcccccCccCeEEEEecC
Confidence 44788999999999854 334444 555 556666655554
No 385
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=62.36 E-value=78 Score=33.21 Aligned_cols=131 Identities=15% Similarity=0.078 Sum_probs=67.6
Q ss_pred EEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHH---HHHHHhhCCCceEEEEcCCh----hHHHHHHHHHH
Q 001197 431 LADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW---INEFSTWAPSIAAVVYDGRP----DERKAMREEFF 503 (1125)
Q Consensus 431 LADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW---~~Ef~k~~p~~~vivy~G~~----~~R~~l~~~~~ 503 (1125)
+--..|.|||-.|++++......+ .+++||==.. ..| ...+-+.+|++.+..+.... ..........
T Consensus 7 vy~g~G~Gkt~~a~g~~~ra~~~g---~~v~~vQFlK--g~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a- 80 (159)
T cd00561 7 VYTGNGKGKTTAALGLALRALGHG---YRVGVVQFLK--GGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA- 80 (159)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCC---CeEEEEEEeC--CCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH-
Confidence 345679999999998887666542 3555532110 002 11222333555544433211 0000000000
Q ss_pred hhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCC----hhhHHHHHHHccccceEEEeecCCCCCChHHHHHH
Q 001197 504 SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN----HECALAKTISGYQIQRRLLLTGTPIQNSLQELWSL 579 (1125)
Q Consensus 504 ~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN----~~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~sL 579 (1125)
.+.+......+....+++||+||.=..-+ ....+...+..-+..--++|||-- -..+|..+
T Consensus 81 ------------~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~---~p~~l~e~ 145 (159)
T cd00561 81 ------------AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRN---APKELIEA 145 (159)
T ss_pred ------------HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCC---CCHHHHHh
Confidence 01122223445566899999999876533 223555666555566689999974 44555544
Q ss_pred hhc
Q 001197 580 LNF 582 (1125)
Q Consensus 580 L~f 582 (1125)
.++
T Consensus 146 AD~ 148 (159)
T cd00561 146 ADL 148 (159)
T ss_pred Cce
Confidence 443
No 386
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=62.30 E-value=55 Score=39.72 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=20.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 001197 429 GILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e 452 (1125)
.+++...|.|||.++.-++.++..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~ 125 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKK 125 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH
Confidence 467999999999999998888753
No 387
>PF12846 AAA_10: AAA-like domain
Probab=62.07 E-value=24 Score=39.39 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=32.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHH
Q 001197 427 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINE 475 (1125)
Q Consensus 427 ~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~E 475 (1125)
.+.++...+|+|||..+..++..+...+ .+++|+=|..-...|...
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g---~~~~i~D~~g~~~~~~~~ 47 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRG---PRVVIFDPKGDYSPLARA 47 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcC---CCEEEEcCCchHHHHHHh
Confidence 5678889999999988888877776653 456777666444444333
No 388
>CHL00176 ftsH cell division protein; Validated
Probab=61.60 E-value=38 Score=43.13 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=19.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHH
Q 001197 426 NLNGILADEMGLGKTIQTIALIAY 449 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~ 449 (1125)
..+.+|..+.|+|||..+=+++..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345688999999999998777653
No 389
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=60.92 E-value=36 Score=45.17 Aligned_cols=95 Identities=19% Similarity=0.134 Sum_probs=66.1
Q ss_pred hcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHH----hCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEE
Q 001197 715 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 790 (1125)
Q Consensus 715 ~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~----~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfL 790 (1125)
.|||-......+-.....|.+++|.++.+..+..+...|. ..++++..++|.++..++..+++.+..+..+ | +
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d--I-V 558 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKID--I-L 558 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCce--E-E
Confidence 4566654443333333467899999999988777666554 3477889999999999999999999886554 4 4
Q ss_pred eecc-ccccccCCCCCCEEEEeC
Q 001197 791 LSTR-AGGLGLNLQTADTVIIFD 812 (1125)
Q Consensus 791 LSTr-AGG~GLNLq~Ad~VIi~D 812 (1125)
+.|. .....+.+.....||+=+
T Consensus 559 IGTp~ll~~~v~f~~L~llVIDE 581 (926)
T TIGR00580 559 IGTHKLLQKDVKFKDLGLLIIDE 581 (926)
T ss_pred EchHHHhhCCCCcccCCEEEeec
Confidence 5544 444456777777777633
No 390
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=60.87 E-value=1.7e+02 Score=34.99 Aligned_cols=143 Identities=16% Similarity=0.128 Sum_probs=75.7
Q ss_pred CCccHHHHHHHHHHHHhhccC--CCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCccc---HHHHHHHHHhhC
Q 001197 406 GELRAYQLEGLQWMLSLFNNN--LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV---LPNWINEFSTWA 480 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~--~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sl---l~qW~~Ef~k~~ 480 (1125)
.--|.+|...+.-++..-..- -..+|-...|+|||..+-.++..+ .-|+..|++... -.-|..-+.+-.
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~------n~~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL------NLENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc------CCcceeeehHHhccHHHHHHHHHHHhc
Confidence 356899999987666421111 122788899999998887776544 336677766421 222333333321
Q ss_pred CCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhcc-CeeEEEEcCCcccCChhhHHHHHHHcc---
Q 001197 481 PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKV-QWIYMIVDEGHRLKNHECALAKTISGY--- 556 (1125)
Q Consensus 481 p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki-~w~~VIIDEAHriKN~~SklskaL~~l--- 556 (1125)
..-+.|...+- ....+ ..| -.+........+. .--++|+|-|..+....+.+...+-.+
T Consensus 82 ----~~d~dg~~~~~--~~en~----~d~-------i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el 144 (438)
T KOG2543|consen 82 ----LADKDGDKVEG--DAENF----SDF-------IYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYEL 144 (438)
T ss_pred ----cCCCchhhhhh--HHHHH----HHH-------HHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHH
Confidence 01111111100 00000 000 0000001111122 345899999999999888777666443
Q ss_pred --ccceEEEeecCCCCC
Q 001197 557 --QIQRRLLLTGTPIQN 571 (1125)
Q Consensus 557 --~s~~RLlLTGTPlqN 571 (1125)
...-+++++.++..+
T Consensus 145 ~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 145 LNEPTIVIILSAPSCEK 161 (438)
T ss_pred hCCCceEEEEeccccHH
Confidence 346778888887544
No 391
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=60.31 E-value=20 Score=41.86 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=33.5
Q ss_pred CCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 001197 405 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e 452 (1125)
.+.+.+.|..-+..++. .+.|.|++..||+|||-..-+++.++..
T Consensus 126 ~g~~~~~~~~~L~~~v~---~~~nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 126 SKIMTEAQASVIRSAID---SRLNIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred cCCCCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 45677778766665554 5677789999999999888777766643
No 392
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=60.10 E-value=28 Score=41.06 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=19.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHH
Q 001197 426 NLNGILADEMGLGKTIQTIALIAY 449 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~ 449 (1125)
..+.+|..+.|+|||..+-+++..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 345688999999999988777654
No 393
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=60.01 E-value=84 Score=37.87 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=34.6
Q ss_pred CeeEEEEcCCcccCChhh---HHHHHHHcc-ccceEEEeec--CCCCCC--hHHHHHHhhcc
Q 001197 530 QWIYMIVDEGHRLKNHEC---ALAKTISGY-QIQRRLLLTG--TPIQNS--LQELWSLLNFL 583 (1125)
Q Consensus 530 ~w~~VIIDEAHriKN~~S---klskaL~~l-~s~~RLlLTG--TPlqN~--l~EL~sLL~fL 583 (1125)
..++++||..|.+.+... -++..+..+ .....|+||+ +|-+-+ .++|.|=+.+-
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G 236 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG 236 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce
Confidence 577999999999977633 344444444 3445899999 674433 45666655543
No 394
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=59.79 E-value=67 Score=41.81 Aligned_cols=137 Identities=17% Similarity=0.124 Sum_probs=65.6
Q ss_pred HhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCC-CCEEEEc-C-----cccHHHHHHHHHhhCCCceEEEEcCChh
Q 001197 421 SLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIVA-P-----KAVLPNWINEFSTWAPSIAAVVYDGRPD 493 (1125)
Q Consensus 421 ~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~-gp~LIVv-P-----~sll~qW~~Ef~k~~p~~~vivy~G~~~ 493 (1125)
.....+.-.|+--|+|+|||.|.-.+|..-+....+. -.-.+|| | -+++....+|=..-. ..++.|.-...
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~--g~tvgy~vRf~ 465 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEV--GETCGYNVRFD 465 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhh--ccccccccccc
Confidence 3444566678888999999999887776544322211 1112333 3 333333333322111 11222221100
Q ss_pred HHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHcc----ccceEEEeecCC
Q 001197 494 ERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY----QIQRRLLLTGTP 568 (1125)
Q Consensus 494 ~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l----~s~~RLlLTGTP 568 (1125)
. ..+...--++.+|-+.+.+.... ......++|+||.|..--..--+...+..+ +.-+.+++++|-
T Consensus 466 S--------a~prpyg~i~fctvgvllr~~e~-glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatI 535 (1282)
T KOG0921|consen 466 S--------ATPRPYGSIMFCTVGVLLRMMEN-GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATI 535 (1282)
T ss_pred c--------cccccccceeeeccchhhhhhhh-cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhccc
Confidence 0 00001112556666665543221 123566899999997533222233333433 444567888885
No 395
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=59.66 E-value=31 Score=44.70 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=18.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHH
Q 001197 426 NLNGILADEMGLGKTIQTIALIAY 449 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~ 449 (1125)
+.+.+|..+.|+|||..+-+++..
T Consensus 212 ~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHH
Confidence 345678999999999877666543
No 396
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=59.62 E-value=16 Score=42.12 Aligned_cols=112 Identities=17% Similarity=0.235 Sum_probs=62.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHc---cCCCCCEEEEcCc-cc-----HHHHHHHHHh--hC--CCceEEEEcCCh
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLEN---KGVTGPHVIVAPK-AV-----LPNWINEFST--WA--PSIAAVVYDGRP 492 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e~---~~~~gp~LIVvP~-sl-----l~qW~~Ef~k--~~--p~~~vivy~G~~ 492 (1125)
..=|++-.++|+||+-- +..|+.. .+....+.+|+|. .+ +.-|..++.. +. |+-.++--.|+
T Consensus 87 P~I~~VYGPTG~GKSqL----lRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t- 161 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKSQL----LRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGT- 161 (369)
T ss_pred ceEEEEECCCCCCHHHH----HHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccc-
Confidence 34478889999999943 3333332 2344568889886 33 3448877764 22 22222222222
Q ss_pred hHHHHHHHHHHhhcCCccEEEecHHHHHHhH-----------HhhhccCeeEEEEcCCcccCChhhHHHHHHHcc
Q 001197 493 DERKAMREEFFSERGRFNVLITHYDLIMRDR-----------QYLKKVQWIYMIVDEGHRLKNHECALAKTISGY 556 (1125)
Q Consensus 493 ~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~-----------~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l 556 (1125)
-.++.|-+||+-+..+. ..-.+-..-.||+|||-.-.......+.....|
T Consensus 162 --------------~~P~Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe~Lg~~~~is~fFHAl 222 (369)
T PF02456_consen 162 --------------FRPKFVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECMEKLGSHKSISKFFHAL 222 (369)
T ss_pred --------------ccccceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHHHhcCCCChhHHHhcC
Confidence 24567778888775532 123345788999999865333333333333333
No 397
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=59.62 E-value=1.5e+02 Score=36.09 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=22.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 464 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVv 464 (1125)
.++...|.|||.++..++.++...+ . .+++|+
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~~G--~-kV~lV~ 135 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQRKG--F-KPCLVC 135 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--C-CEEEEc
Confidence 4678899999999988888775432 2 445444
No 398
>PRK08760 replicative DNA helicase; Provisional
Probab=59.21 E-value=89 Score=38.49 Aligned_cols=126 Identities=11% Similarity=0.097 Sum_probs=67.7
Q ss_pred HHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceEE-EEcCC--
Q 001197 415 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAV-VYDGR-- 491 (1125)
Q Consensus 415 gv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vi-vy~G~-- 491 (1125)
.+.-|..-+..+.=.|||..+|.|||.-++.++....... ..|++++..--...+|...+......+... +..|.
T Consensus 218 ~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~--g~~V~~fSlEMs~~ql~~Rl~a~~s~i~~~~i~~g~l~ 295 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKS--KKGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALE 295 (476)
T ss_pred HHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhc--CCceEEEeccCCHHHHHHHHHHhhCCCcHHHHhcCCCC
Confidence 4444444333333358899999999999998887664321 247888888777778877765543222211 11222
Q ss_pred hhHHHHHHHHHHhhcCCccEEEe-----cHHHHHHhHHhh-hccCeeEEEEcCCcccC
Q 001197 492 PDERKAMREEFFSERGRFNVLIT-----HYDLIMRDRQYL-KKVQWIYMIVDEGHRLK 543 (1125)
Q Consensus 492 ~~~R~~l~~~~~~~~~~fdVvIT-----TYe~l~kd~~~L-~ki~w~~VIIDEAHriK 543 (1125)
..+...+.... .......++|. |.+.+......+ .....++||||=.|.|.
T Consensus 296 ~~e~~~~~~a~-~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 296 DEDWARVTGAI-KMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHH-HHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcC
Confidence 11111111111 11122334433 334443332222 34467899999777774
No 399
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=59.11 E-value=53 Score=38.40 Aligned_cols=126 Identities=23% Similarity=0.321 Sum_probs=64.2
Q ss_pred CCeE-EEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccH-HHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHh
Q 001197 427 LNGI-LADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL-PNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS 504 (1125)
Q Consensus 427 ~~GI-LADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll-~qW~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~ 504 (1125)
.+.| +..--|.|||.+.--++.++...+ ..+|+.+ ..+. .--.+++.-|...+.+-+..+....-
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g---~~VllaA-~DTFRAaAiEQL~~w~er~gv~vI~~~~G~D--------- 205 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQG---KSVLLAA-GDTFRAAAIEQLEVWGERLGVPVISGKEGAD--------- 205 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCC---CeEEEEe-cchHHHHHHHHHHHHHHHhCCeEEccCCCCC---------
Confidence 3444 467889999977666665555432 2344443 3332 22344455565333333333211000
Q ss_pred hcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhh------HHHHHHHcc--ccceEEEee--cCCCCCChH
Q 001197 505 ERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHEC------ALAKTISGY--QIQRRLLLT--GTPIQNSLQ 574 (1125)
Q Consensus 505 ~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~S------klskaL~~l--~s~~RLlLT--GTPlqN~l~ 574 (1125)
..-| -|+.+ ..-..-++|+||||=|-|+-|... +..+.+... .++|.++|+ ||-=||.+.
T Consensus 206 ---pAaV---afDAi----~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~ 275 (340)
T COG0552 206 ---PAAV---AFDAI----QAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALS 275 (340)
T ss_pred ---cHHH---HHHHH----HHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHH
Confidence 0001 12222 333445899999999999977432 444444322 244555544 787777665
Q ss_pred H
Q 001197 575 E 575 (1125)
Q Consensus 575 E 575 (1125)
.
T Consensus 276 Q 276 (340)
T COG0552 276 Q 276 (340)
T ss_pred H
Confidence 3
No 400
>PRK09183 transposase/IS protein; Provisional
Probab=58.98 E-value=50 Score=37.20 Aligned_cols=42 Identities=26% Similarity=0.166 Sum_probs=28.3
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccH
Q 001197 425 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL 469 (1125)
Q Consensus 425 ~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll 469 (1125)
.+.+.+|..+.|+|||..+.++...+... ...++++....++
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~---G~~v~~~~~~~l~ 142 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRA---GIKVRFTTAADLL 142 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeHHHHH
Confidence 46677889999999999998886655443 2245555433343
No 401
>PF05729 NACHT: NACHT domain
Probab=58.81 E-value=32 Score=34.58 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=20.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccC
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKG 455 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~ 455 (1125)
+|..+.|.|||..+-.++..+.....
T Consensus 4 ~I~G~~G~GKStll~~~~~~~~~~~~ 29 (166)
T PF05729_consen 4 WISGEPGSGKSTLLRKLAQQLAEEEP 29 (166)
T ss_pred EEECCCCCChHHHHHHHHHHHHhcCc
Confidence 56788999999998888877776543
No 402
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=58.77 E-value=1e+02 Score=35.06 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=23.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 464 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVv 464 (1125)
++....|.|||.++..++.++... ...+++|.
T Consensus 76 ~l~G~~G~GKTTt~akLA~~l~~~---g~~V~li~ 107 (272)
T TIGR00064 76 LFVGVNGVGKTTTIAKLANKLKKQ---GKSVLLAA 107 (272)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEe
Confidence 456899999999998888777543 23455554
No 403
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=58.66 E-value=51 Score=46.51 Aligned_cols=135 Identities=18% Similarity=0.150 Sum_probs=71.8
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccC-CCCCEEEEcCcccHHHHHHHHHhhCCCce
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPKAVLPNWINEFSTWAPSIA 484 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~-~~gp~LIVvP~sll~qW~~Ef~k~~p~~~ 484 (1125)
..|-+-|.+++..++.. .+.-.+|-.-.|+|||.+.-+++..+..... ....++.++|+.-... ++.. .
T Consensus 966 ~~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk---~L~e-~---- 1035 (1747)
T PRK13709 966 EGLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVG---EMRS-A---- 1035 (1747)
T ss_pred CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHH---HHHh-c----
Confidence 47899999999888752 1234577888999999876555544332111 1224667788754322 2222 1
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHccc-cceEEE
Q 001197 485 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ-IQRRLL 563 (1125)
Q Consensus 485 vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l~-s~~RLl 563 (1125)
|-.. . .+ ..+.. ... .+... .......-+++||||+-.+-+. .+...+.... ...+++
T Consensus 1036 -----Gi~A-~-TI-~s~L~---~~~-------~~~~~-~~~~~~~~~llIVDEaSMv~~~--~m~~Ll~~~~~~garvV 1094 (1747)
T PRK13709 1036 -----GVDA-Q-TL-ASFLH---DTQ-------LQQRS-GETPDFSNTLFLLDESSMVGNT--DMARAYALIAAGGGRAV 1094 (1747)
T ss_pred -----Ccch-h-hH-HHHhc---ccc-------ccccc-ccCCCCCCcEEEEEccccccHH--HHHHHHHhhhcCCCEEE
Confidence 1100 0 00 01110 000 00000 0011124579999999988654 2334444443 357899
Q ss_pred eecCCCCC
Q 001197 564 LTGTPIQN 571 (1125)
Q Consensus 564 LTGTPlqN 571 (1125)
|.|=+-|-
T Consensus 1095 LVGD~~QL 1102 (1747)
T PRK13709 1095 SSGDTDQL 1102 (1747)
T ss_pred EecchHhc
Confidence 99987664
No 404
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=58.61 E-value=37 Score=43.29 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=53.4
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHcc---CCCCCEEEEcCc-ccHHHHHHHHHh
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK---GVTGPHVIVAPK-AVLPNWINEFST 478 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~---~~~gp~LIVvP~-sll~qW~~Ef~k 478 (1125)
.|..-|..+.+.++. ..-.|+-.+.|+|||.+++-++..++... ...-|+||||-+ +.+.|.-.-+-.
T Consensus 378 ildsSq~~A~qs~lt----yelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLT----YELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred eecHHHHHHHHHHhh----hhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 677889999988875 33458889999999999999998888754 334699999976 778887666554
No 405
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=58.18 E-value=17 Score=46.61 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=44.2
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCC-CCCEEEEcCc-ccHHHHHHHHHh
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVAPK-AVLPNWINEFST 478 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~-~gp~LIVvP~-sll~qW~~Ef~k 478 (1125)
.|-|-|.++|.+. ....++....|+|||.+.+.-+++|+...+. ...+|+|+.+ .....-..-+.+
T Consensus 2 ~Ln~~Q~~av~~~------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~ 69 (672)
T PRK10919 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQ 69 (672)
T ss_pred CCCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHH
Confidence 4788999998631 2344555669999999999999999975332 3457888775 333333333433
No 406
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=58.14 E-value=33 Score=39.81 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=21.3
Q ss_pred hccCCCeEEEcCCCchHHHHHHHHHHHH
Q 001197 423 FNNNLNGILADEMGLGKTIQTIALIAYL 450 (1125)
Q Consensus 423 ~~~~~~GILADEMGLGKTiqaIali~~L 450 (1125)
+..+...||+.+-|+|||...|-+...+
T Consensus 86 fr~g~~~~~~gdsg~GKttllL~l~Ial 113 (402)
T COG3598 86 FRKGYVSILYGDSGVGKTTLLLYLCIAL 113 (402)
T ss_pred hhcCeeEEEecCCcccHhHHHHHHHHHH
Confidence 3456777999999999998877665444
No 407
>PHA02518 ParA-like protein; Provisional
Probab=58.13 E-value=44 Score=35.44 Aligned_cols=38 Identities=24% Similarity=0.452 Sum_probs=27.1
Q ss_pred CCCchHHHHHHHHHHHHHHccCCCCCEEEEc--CcccHHHHHH
Q 001197 434 EMGLGKTIQTIALIAYLLENKGVTGPHVIVA--PKAVLPNWIN 474 (1125)
Q Consensus 434 EMGLGKTiqaIali~~L~e~~~~~gp~LIVv--P~sll~qW~~ 474 (1125)
-=|.|||..++.+..++...+ .++|+|- |...+..|..
T Consensus 9 KGGvGKTT~a~~la~~la~~g---~~vlliD~D~q~~~~~~~~ 48 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADG---HKVLLVDLDPQGSSTDWAE 48 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CeEEEEeCCCCCChHHHHH
Confidence 348999999999888776542 3556553 6677778864
No 408
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=58.10 E-value=1e+02 Score=37.22 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHH
Q 001197 413 LEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 474 (1125)
Q Consensus 413 ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~ 474 (1125)
..++.-++.-+..+.=.+|+...|.|||.-++.++....... ..+++++..--...+...
T Consensus 182 ~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~--g~~vl~~SlEm~~~~i~~ 241 (434)
T TIGR00665 182 FTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKE--GKPVAFFSLEMSAEQLAM 241 (434)
T ss_pred chhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhC--CCeEEEEeCcCCHHHHHH
Confidence 344554443233333348899999999999998887765422 247888876544444433
No 409
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=57.69 E-value=1e+02 Score=31.82 Aligned_cols=52 Identities=10% Similarity=0.123 Sum_probs=32.5
Q ss_pred cCeeEEEEcCCcccCChhhHHHHHHHccccceEEEeecCCCCCChHHHHHHhhccC
Q 001197 529 VQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLL 584 (1125)
Q Consensus 529 i~w~~VIIDEAHriKN~~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~ 584 (1125)
-.+++||||=...+.+. ....+ .+.....+++..+|-..++.+...++.++.
T Consensus 66 ~~yD~VIiD~pp~~~~~---~~~~~-~~~~ad~viiV~~p~~~s~~~~~~~~~~l~ 117 (169)
T cd02037 66 GELDYLVIDMPPGTGDE---HLTLA-QSLPIDGAVIVTTPQEVALDDVRKAIDMFK 117 (169)
T ss_pred CCCCEEEEeCCCCCcHH---HHHHH-hccCCCeEEEEECCchhhHHHHHHHHHHHH
Confidence 47999999976654221 11111 112335566666888888888888877764
No 410
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=57.38 E-value=54 Score=37.37 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=20.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 429 GILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
.+++...|.|||.++..++.++...
T Consensus 197 i~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3567899999999999888887654
No 411
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=57.20 E-value=20 Score=42.09 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=20.0
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHH
Q 001197 425 NNLNGILADEMGLGKTIQTIALIA 448 (1125)
Q Consensus 425 ~~~~GILADEMGLGKTiqaIali~ 448 (1125)
...|.+|-.+.|+|||+.|-++..
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Ak 149 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAK 149 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHH
Confidence 566778899999999999987764
No 412
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=56.58 E-value=3e+02 Score=33.24 Aligned_cols=134 Identities=19% Similarity=0.182 Sum_probs=69.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhc
Q 001197 427 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSER 506 (1125)
Q Consensus 427 ~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~~~ 506 (1125)
....|..++|.|||-+..-+++.+.-..+..+.-||-+-+.=+. -..++..++ .+.
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG-A~EQLk~Ya--------------------~im--- 259 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG-AVEQLKTYA--------------------DIM--- 259 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh-HHHHHHHHH--------------------HHh---
Confidence 33467899999999876655554442222222223322211110 011121111 121
Q ss_pred CCccEEEecHHHHHHhHHhhhccCeeEEEEcC-CcccCChhh--HHHHHHHc-cccceEEEeecCCCCCChHHHHHHhhc
Q 001197 507 GRFNVLITHYDLIMRDRQYLKKVQWIYMIVDE-GHRLKNHEC--ALAKTISG-YQIQRRLLLTGTPIQNSLQELWSLLNF 582 (1125)
Q Consensus 507 ~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDE-AHriKN~~S--klskaL~~-l~s~~RLlLTGTPlqN~l~EL~sLL~f 582 (1125)
+-+-.++.+..-+......+.. .++|.||= |+.-++... .+...+.. .....-|.|++|--...+.+++..+..
T Consensus 260 ~vp~~vv~~~~el~~ai~~l~~--~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~ 337 (407)
T COG1419 260 GVPLEVVYSPKELAEAIEALRD--CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSL 337 (407)
T ss_pred CCceEEecCHHHHHHHHHHhhc--CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhcc
Confidence 2233445555555555555553 48999994 444444321 12222211 244567899999888888888888877
Q ss_pred cCCC
Q 001197 583 LLPT 586 (1125)
Q Consensus 583 L~P~ 586 (1125)
+..+
T Consensus 338 ~~i~ 341 (407)
T COG1419 338 FPID 341 (407)
T ss_pred CCcc
Confidence 7544
No 413
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=56.52 E-value=53 Score=39.46 Aligned_cols=37 Identities=11% Similarity=0.185 Sum_probs=21.5
Q ss_pred HHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHH
Q 001197 414 EGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLL 451 (1125)
Q Consensus 414 egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~ 451 (1125)
.++..++- ...+..++|..+-|.|||..+-.+...+.
T Consensus 158 rvID~l~P-IGkGQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 158 RIIDLIAP-IGKGQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred eeeeeecc-cccCceEEEeCCCCCChhHHHHHHHHHHH
Confidence 34443332 23455556666799999976666544443
No 414
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=56.30 E-value=17 Score=43.59 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=25.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccH
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL 469 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll 469 (1125)
+.+.+|..+.|+|||..+-+++..+ ..+++.|.+..++
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s~l~ 216 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGSEFV 216 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHH
Confidence 4556889999999999887766432 2356666554433
No 415
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=56.25 E-value=92 Score=37.74 Aligned_cols=54 Identities=22% Similarity=0.164 Sum_probs=31.4
Q ss_pred CeeEEEEcCCcccCChhhHHHHHHHcc-----ccceEEEeecCCCCCChHHHHHHhhccC
Q 001197 530 QWIYMIVDEGHRLKNHECALAKTISGY-----QIQRRLLLTGTPIQNSLQELWSLLNFLL 584 (1125)
Q Consensus 530 ~w~~VIIDEAHriKN~~SklskaL~~l-----~s~~RLlLTGTPlqN~l~EL~sLL~fL~ 584 (1125)
.+++++||.+=+..+. ..+...+..+ .....|.|++|--.+.+.+....+..+.
T Consensus 269 ~~d~VLIDTaGrsqrd-~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~ 327 (420)
T PRK14721 269 GKHMVLIDTVGMSQRD-QMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHG 327 (420)
T ss_pred CCCEEEecCCCCCcch-HHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCC
Confidence 5678888886444322 2233333333 2345678999977777777666555443
No 416
>PRK05748 replicative DNA helicase; Provisional
Probab=56.21 E-value=1.4e+02 Score=36.36 Aligned_cols=128 Identities=14% Similarity=0.089 Sum_probs=65.9
Q ss_pred HHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceEE-EEcCC
Q 001197 413 LEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAV-VYDGR 491 (1125)
Q Consensus 413 ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vi-vy~G~ 491 (1125)
..++.-++.-+..+.-.+||..+|.|||.-++.++...... ...|++++..--.-.++...+-.....+... +..|.
T Consensus 190 ~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~--~g~~v~~fSlEms~~~l~~R~l~~~~~v~~~~i~~~~ 267 (448)
T PRK05748 190 FTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATK--TDKNVAIFSLEMGAESLVMRMLCAEGNIDAQRLRTGQ 267 (448)
T ss_pred hHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHh--CCCeEEEEeCCCCHHHHHHHHHHHhcCCCHHHhhcCC
Confidence 34566555434444445889999999999999888765432 1347888876655555554443221122111 11222
Q ss_pred h--hHHHHHHHHHHhhcCCccEEEe-----cHHHHHHhHHhh-hcc-CeeEEEEcCCcccC
Q 001197 492 P--DERKAMREEFFSERGRFNVLIT-----HYDLIMRDRQYL-KKV-QWIYMIVDEGHRLK 543 (1125)
Q Consensus 492 ~--~~R~~l~~~~~~~~~~fdVvIT-----TYe~l~kd~~~L-~ki-~w~~VIIDEAHriK 543 (1125)
- .+...+.... .......+.|. |.+.+......+ ... +.++||||=-|.|.
T Consensus 268 l~~~e~~~~~~a~-~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 268 LTDDDWPKLTIAM-GSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred CCHHHHHHHHHHH-HHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 1 1111111111 11122334442 334444333233 333 57899999888875
No 417
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=56.12 E-value=47 Score=38.79 Aligned_cols=56 Identities=25% Similarity=0.282 Sum_probs=32.0
Q ss_pred cCCCchHHHHHHHHHHHHHHccCCCCCEEEE-c-CcccHHH-HHHH----HHhhCCCceEEEEcCC
Q 001197 433 DEMGLGKTIQTIALIAYLLENKGVTGPHVIV-A-PKAVLPN-WINE----FSTWAPSIAAVVYDGR 491 (1125)
Q Consensus 433 DEMGLGKTiqaIali~~L~e~~~~~gp~LIV-v-P~sll~q-W~~E----f~k~~p~~~vivy~G~ 491 (1125)
.-=|.|||-+|.|+..++.+.+ .+ +|+| + |.+-+.+ ...+ ..+-.|++.+.-+.-.
T Consensus 9 GKGGVGKTT~aaA~A~~lA~~g--~k-vLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~ 71 (322)
T COG0003 9 GKGGVGKTTIAAATAVKLAESG--KK-VLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPE 71 (322)
T ss_pred cCCcccHHHHHHHHHHHHHHcC--Cc-EEEEEeCCCCchHhhhccccCCchhhcCCCCceeeecHH
Confidence 3348899999999888887764 33 4444 3 5533332 2222 2233456666655543
No 418
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=55.94 E-value=24 Score=39.46 Aligned_cols=94 Identities=16% Similarity=0.242 Sum_probs=52.0
Q ss_pred CCCchHHHHHHHHHHHHHHccCCCCCEEEE--cCcccHH---------------------HHHHHHHhhCCCceEEEEcC
Q 001197 434 EMGLGKTIQTIALIAYLLENKGVTGPHVIV--APKAVLP---------------------NWINEFSTWAPSIAAVVYDG 490 (1125)
Q Consensus 434 EMGLGKTiqaIali~~L~e~~~~~gp~LIV--vP~sll~---------------------qW~~Ef~k~~p~~~vivy~G 490 (1125)
-=|.|||-.|.+++..|...+ .++|+| +|.+.+. .|.....+..+++.++-|..
T Consensus 10 kGGvG~TTltAnLA~aL~~~G---~~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~LPfG~ 86 (243)
T PF06564_consen 10 KGGVGKTTLTANLAWALARLG---ESVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDFLPFGQ 86 (243)
T ss_pred CCCCCHHHHHHHHHHHHHHCC---CcEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEEEcCCC
Confidence 348999999999888876643 356655 3655551 14444444455666666655
Q ss_pred ChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhh-ccCeeEEEEcCCc
Q 001197 491 RPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK-KVQWIYMIVDEGH 540 (1125)
Q Consensus 491 ~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~-ki~w~~VIIDEAH 540 (1125)
......... .-+......+......+. ...|++||||=.+
T Consensus 87 l~~~~~~~~----------~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~ 127 (243)
T PF06564_consen 87 LTEAEREAF----------EQLAQDPQWLARALAALKALGPYDWILIDTPP 127 (243)
T ss_pred CCHHHHHHH----------HHhhcCHHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 433222111 112222333444444455 4568888888544
No 419
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=55.57 E-value=34 Score=41.16 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=50.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRF 509 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~~~~~f 509 (1125)
+++.=.|+|||.++.-++.|+.. ...+|.||-|-. --+--..+++..+..+.+-+|.-....-.
T Consensus 104 mmvGLQGsGKTTt~~KLA~~lkk--~~~kvllVaaD~-~RpAA~eQL~~La~q~~v~~f~~~~~~~P------------- 167 (451)
T COG0541 104 LMVGLQGSGKTTTAGKLAKYLKK--KGKKVLLVAADT-YRPAAIEQLKQLAEQVGVPFFGSGTEKDP------------- 167 (451)
T ss_pred EEEeccCCChHhHHHHHHHHHHH--cCCceEEEeccc-CChHHHHHHHHHHHHcCCceecCCCCCCH-------------
Confidence 45777899999999999888877 234454544432 11222333444443444444443111000
Q ss_pred cEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCC
Q 001197 510 NVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN 544 (1125)
Q Consensus 510 dVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN 544 (1125)
.+....-...+....+|+||||=|-|+.-
T Consensus 168 ------v~Iak~al~~ak~~~~DvvIvDTAGRl~i 196 (451)
T COG0541 168 ------VEIAKAALEKAKEEGYDVVIVDTAGRLHI 196 (451)
T ss_pred ------HHHHHHHHHHHHHcCCCEEEEeCCCcccc
Confidence 01222333455666788888888877643
No 420
>PRK09165 replicative DNA helicase; Provisional
Probab=55.43 E-value=1.3e+02 Score=37.31 Aligned_cols=128 Identities=12% Similarity=0.084 Sum_probs=65.4
Q ss_pred HHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccC------------CCCCEEEEcCcccHHHHHHHHHhhCCC
Q 001197 415 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG------------VTGPHVIVAPKAVLPNWINEFSTWAPS 482 (1125)
Q Consensus 415 gv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~------------~~gp~LIVvP~sll~qW~~Ef~k~~p~ 482 (1125)
++.-++.-+..+.=.|||..+|+|||.-++.++........ ...++|++..--...++..-+-....+
T Consensus 206 ~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~ 285 (497)
T PRK09165 206 DLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSE 285 (497)
T ss_pred HHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcC
Confidence 45544433333333588999999999999888766543211 135788887665566655554333222
Q ss_pred ceEE-EEcCC--hhHHHHHHHHHHhhcCCccEEEe-----cHHHHHHhHH-hhhccCeeEEEEcCCcccC
Q 001197 483 IAAV-VYDGR--PDERKAMREEFFSERGRFNVLIT-----HYDLIMRDRQ-YLKKVQWIYMIVDEGHRLK 543 (1125)
Q Consensus 483 ~~vi-vy~G~--~~~R~~l~~~~~~~~~~fdVvIT-----TYe~l~kd~~-~L~ki~w~~VIIDEAHriK 543 (1125)
+... +..|. ..+...+.... .......+.|. |.+.+..... .....+.++||||=-|.|.
T Consensus 286 v~~~~i~~~~l~~~e~~~l~~a~-~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 286 ISSSKIRRGKISEEDFEKLVDAS-QELQKLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLIR 354 (497)
T ss_pred CCHHHHhcCCCCHHHHHHHHHHH-HHHhcCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcc
Confidence 2111 12222 11222221111 11123334442 3444433322 2234568899999888775
No 421
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=55.16 E-value=5.8 Score=52.52 Aligned_cols=119 Identities=29% Similarity=0.360 Sum_probs=106.9
Q ss_pred CEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccccccccCCCCCCEEEEeCC
Q 001197 734 HRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDS 813 (1125)
Q Consensus 734 ~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GLNLq~Ad~VIi~D~ 813 (1125)
.+||||||+...+|.++..+...++++.+..|+- +-...+..|.. +.|||+-+..|+-|+||..|.+|++.+|
T Consensus 1222 ekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~---d~~dc~~~fk~----I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1222 EKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETE---DFDDCIICFKS----IDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred ceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCc---chhhhhhhccc----ceEEEEEeccCcccccHHhhhhhheecc
Confidence 4999999999999999999999999987666533 34567777865 6789999999999999999999999999
Q ss_pred CCChhhHHHHHhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHh
Q 001197 814 DWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKM 859 (1125)
Q Consensus 814 ~WNP~~d~QAigRahRIGQkk~V~VyrLIt~~TIEE~Il~r~~~Kl 859 (1125)
--||..+.||+||+|||||++++.||+|+..+||||.|+.....|-
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~e 1340 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKE 1340 (1394)
T ss_pred ccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhH
Confidence 9999999999999999999999999999999999999998766553
No 422
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=55.12 E-value=17 Score=44.52 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=35.7
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhh
Q 001197 425 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 479 (1125)
Q Consensus 425 ~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~ 479 (1125)
...+.+|+.+.|+|||+.|-++...+ ..+++-|-..+++..|.-|.++-
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~l~sk~vGesek~ 323 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSELLSKWVGESEKN 323 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHHHhccccchHHHH
Confidence 34466889999999999998877532 33666555558888887777663
No 423
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=54.86 E-value=30 Score=44.69 Aligned_cols=23 Identities=26% Similarity=0.154 Sum_probs=18.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 001197 427 LNGILADEMGLGKTIQTIALIAY 449 (1125)
Q Consensus 427 ~~GILADEMGLGKTiqaIali~~ 449 (1125)
.+.||..+.|+|||..+-++...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999887666543
No 424
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=54.45 E-value=52 Score=39.58 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=18.2
Q ss_pred ccCCCeEEEcCCCchHHHHHHHHHHHH
Q 001197 424 NNNLNGILADEMGLGKTIQTIALIAYL 450 (1125)
Q Consensus 424 ~~~~~GILADEMGLGKTiqaIali~~L 450 (1125)
..+..+.|..+.|+|||..+-.+...+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 345556777889999997665544433
No 425
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=54.45 E-value=21 Score=45.01 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=38.6
Q ss_pred CCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHH-HHHHH
Q 001197 405 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL-IAYLL 451 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIal-i~~L~ 451 (1125)
..++++-|.+-.+-+.+....+.-||+-.++|+|||+.-|+. +.+|.
T Consensus 13 Py~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 13 PYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 358899999888888888888999999999999999987744 44444
No 426
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=54.28 E-value=37 Score=41.48 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=40.5
Q ss_pred HHHHHHHHh-hccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhh
Q 001197 414 EGLQWMLSL-FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 479 (1125)
Q Consensus 414 egv~wml~l-~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~ 479 (1125)
.++..++.- +..+.-.+|+-++|.|||..++.++..+... .+++|.|.......|+.....++
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~EEs~~qi~~ra~rl 144 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGEESLQQIKMRAIRL 144 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECcCCHHHHHHHHHHc
Confidence 456555531 1122223789999999999998887766543 25788888766666665544443
No 427
>PRK06620 hypothetical protein; Validated
Probab=54.09 E-value=67 Score=35.11 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=50.0
Q ss_pred EEEcC-cccHHHHHHHHHh-hC--CC-ceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEE
Q 001197 461 VIVAP-KAVLPNWINEFST-WA--PS-IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMI 535 (1125)
Q Consensus 461 LIVvP-~sll~qW~~Ef~k-~~--p~-~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VI 535 (1125)
.||.| +.....+..++.. |. |. ..+++|......+..+...+.. ..+..+++...... ..+. ..++++
T Consensus 18 Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~---~~~~~~~~~~~~~~--~~~~--~~d~ll 90 (214)
T PRK06620 18 FIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQN---LSNAYIIKDIFFNE--EILE--KYNAFI 90 (214)
T ss_pred hEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHh---ccCCEEcchhhhch--hHHh--cCCEEE
Confidence 67777 4555566665554 53 21 2244444333333333333322 23344444332221 1222 347899
Q ss_pred EcCCcccCChhhHHHHHHHcc-ccceEEEeecCC
Q 001197 536 VDEGHRLKNHECALAKTISGY-QIQRRLLLTGTP 568 (1125)
Q Consensus 536 IDEAHriKN~~SklskaL~~l-~s~~RLlLTGTP 568 (1125)
|||.|++. ...+...+..+ .....+++|||-
T Consensus 91 iDdi~~~~--~~~lf~l~N~~~e~g~~ilits~~ 122 (214)
T PRK06620 91 IEDIENWQ--EPALLHIFNIINEKQKYLLLTSSD 122 (214)
T ss_pred Eeccccch--HHHHHHHHHHHHhcCCEEEEEcCC
Confidence 99999762 23444444333 455689999983
No 428
>PRK10689 transcription-repair coupling factor; Provisional
Probab=53.91 E-value=60 Score=44.26 Aligned_cols=95 Identities=12% Similarity=0.031 Sum_probs=64.1
Q ss_pred hcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHH----hCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEE
Q 001197 715 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 790 (1125)
Q Consensus 715 ~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~----~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfL 790 (1125)
.+||-......+-.....|.+|+|.++.+..+..+...|. ..++.+..+.|..+..++..++.....+..+ |++
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~d--IVV 708 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKID--ILI 708 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCC--EEE
Confidence 4566654433333333568899999999988776665554 3357788899999999999999988876554 444
Q ss_pred eeccccccccCCCCCCEEEEe
Q 001197 791 LSTRAGGLGLNLQTADTVIIF 811 (1125)
Q Consensus 791 LSTrAGG~GLNLq~Ad~VIi~ 811 (1125)
.+.......+++.....||+=
T Consensus 709 gTp~lL~~~v~~~~L~lLVID 729 (1147)
T PRK10689 709 GTHKLLQSDVKWKDLGLLIVD 729 (1147)
T ss_pred ECHHHHhCCCCHhhCCEEEEe
Confidence 444444445666777777763
No 429
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=53.31 E-value=24 Score=43.89 Aligned_cols=61 Identities=25% Similarity=0.359 Sum_probs=41.1
Q ss_pred CccHHHHHHHHHHHHhhccCCCe--EEEcCCCchHHHHHHHHHHHHHHcc---CCCCCEEEEcCcccHHHHHH
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNG--ILADEMGLGKTIQTIALIAYLLENK---GVTGPHVIVAPKAVLPNWIN 474 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~G--ILADEMGLGKTiqaIali~~L~e~~---~~~gp~LIVvP~sll~qW~~ 474 (1125)
++-+-|-+.++ +..|+ |+-...|+|||-.|+-=++||+... -..+|+||+.|+.++.....
T Consensus 212 TIQkEQneIIR-------~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis 277 (747)
T COG3973 212 TIQKEQNEIIR-------FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS 277 (747)
T ss_pred HhhHhHHHHHh-------ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH
Confidence 44455555553 23343 5678899999999986677766543 33578999999988765543
No 430
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=52.68 E-value=2e+02 Score=34.54 Aligned_cols=60 Identities=8% Similarity=0.037 Sum_probs=38.4
Q ss_pred HHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHH
Q 001197 414 EGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINE 475 (1125)
Q Consensus 414 egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~E 475 (1125)
..+.-++.-+..+.=.|||..+|.|||.-++.++..+... ...|++++..-....++...
T Consensus 182 ~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~--~g~~v~~fSlEm~~~~l~~R 241 (421)
T TIGR03600 182 PKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR--EGKPVLFFSLEMSAEQLGER 241 (421)
T ss_pred hhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHH
Confidence 3455555433334445889999999999999888666422 23578888755444444333
No 431
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=52.66 E-value=47 Score=36.93 Aligned_cols=41 Identities=27% Similarity=0.431 Sum_probs=29.2
Q ss_pred CCchHHHHHHHHHHHHHHccCCCCCEEEE-c-CcccHHHHHHHHHh
Q 001197 435 MGLGKTIQTIALIAYLLENKGVTGPHVIV-A-PKAVLPNWINEFST 478 (1125)
Q Consensus 435 MGLGKTiqaIali~~L~e~~~~~gp~LIV-v-P~sll~qW~~Ef~k 478 (1125)
=|.|||-.+++++..+...+ +++.|| | |+.-+..|.+-..+
T Consensus 11 GGaGKTT~~~~LAs~la~~G---~~V~lIDaDpn~pl~~W~~~a~~ 53 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARG---ARVALIDADPNQPLAKWAENAQR 53 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCC---CeEEEEeCCCCCcHHHHHHhccc
Confidence 38999999999998887654 344444 4 77778899665433
No 432
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=52.57 E-value=93 Score=40.44 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHHHHHHH
Q 001197 430 ILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e 452 (1125)
.|....|.|||.++.-++..+..
T Consensus 189 ~lVGpnGvGKTTTiaKLA~~~~~ 211 (767)
T PRK14723 189 ALVGPTGVGKTTTTAKLAARCVA 211 (767)
T ss_pred EEECCCCCcHHHHHHHHHhhHHH
Confidence 46899999999887777665543
No 433
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=52.35 E-value=61 Score=38.94 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=60.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRF 509 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~~~~~f 509 (1125)
+++.+.|.||+..-+-+++.+... +++|.|+=---+.||+--..+..- ...
T Consensus 97 LIgGdPGIGKSTLLLQva~~lA~~----~~vLYVsGEES~~QiklRA~RL~~-------------------------~~~ 147 (456)
T COG1066 97 LIGGDPGIGKSTLLLQVAARLAKR----GKVLYVSGEESLQQIKLRADRLGL-------------------------PTN 147 (456)
T ss_pred EEccCCCCCHHHHHHHHHHHHHhc----CcEEEEeCCcCHHHHHHHHHHhCC-------------------------Ccc
Confidence 678999999997766666665543 388999888888888887777641 112
Q ss_pred cEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCC
Q 001197 510 NVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN 544 (1125)
Q Consensus 510 dVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN 544 (1125)
++.+.....+..-...+...++++||||=.+.+-.
T Consensus 148 ~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s 182 (456)
T COG1066 148 NLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYS 182 (456)
T ss_pred ceEEehhcCHHHHHHHHHhcCCCEEEEeccceeec
Confidence 34444444444445566778899999998887744
No 434
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=52.14 E-value=1.7e+02 Score=35.18 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=29.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcC-c---ccHHHHHHHHH
Q 001197 429 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-K---AVLPNWINEFS 477 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP-~---sll~qW~~Ef~ 477 (1125)
.+++.+.|.|||.++..++.++...+ .++.+|+- + ..+.||..-..
T Consensus 209 i~lvGptGvGKTTt~akLA~~l~~~g---~~V~lItaDtyR~gAveQLk~yae 258 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLLKQN---RTVGFITTDTFRSGAVEQFQGYAD 258 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCccCccHHHHHHHHhh
Confidence 35778999999999888887765542 24444442 2 23667755333
No 435
>PRK08840 replicative DNA helicase; Provisional
Probab=52.02 E-value=2.1e+02 Score=35.24 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=39.2
Q ss_pred HHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHH
Q 001197 415 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 476 (1125)
Q Consensus 415 gv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef 476 (1125)
.++-++.-+..+.=.|||.-+|.|||.-++.++...... ...|++++..--...++..-+
T Consensus 206 ~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~--~~~~v~~fSlEMs~~ql~~Rl 265 (464)
T PRK08840 206 DLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD--QDKPVLIFSLEMPAEQLMMRM 265 (464)
T ss_pred HHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh--CCCeEEEEeccCCHHHHHHHH
Confidence 355444434444445889999999999988777665432 235788887765566665544
No 436
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=51.69 E-value=71 Score=37.95 Aligned_cols=38 Identities=11% Similarity=0.196 Sum_probs=24.9
Q ss_pred eeEEEEcCCcccCChhhHHHHHHHccc---cceEEEeecCCCC
Q 001197 531 WIYMIVDEGHRLKNHECALAKTISGYQ---IQRRLLLTGTPIQ 570 (1125)
Q Consensus 531 w~~VIIDEAHriKN~~SklskaL~~l~---s~~RLlLTGTPlq 570 (1125)
++++++|||..+.. ....+.+.++. +..++++|.||-.
T Consensus 102 ~~~~~idEa~~~~~--~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 102 IAIIWFEEASQLTF--EDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred eeeehhhhhhhcCH--HHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 58999999999843 23444444442 2235999999943
No 437
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=51.66 E-value=67 Score=44.27 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=66.4
Q ss_pred ccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHH-HHhhCCCceEE
Q 001197 408 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINE-FSTWAPSIAAV 486 (1125)
Q Consensus 408 LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~E-f~k~~p~~~vi 486 (1125)
+-+-|.+++. ..+.+.++...-|+|||.+.+.-+..++..+.....+||||=+....++..+ +.+-.....
T Consensus 2 ~t~~Q~~ai~------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~-- 73 (1232)
T TIGR02785 2 WTDEQWQAIY------TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKAL-- 73 (1232)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHH--
Confidence 4577888885 2456678888999999999988887766544223458999876555443222 222110000
Q ss_pred EEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHH----hHHhhhccCeeEEEEcCCcc
Q 001197 487 VYDGRPDERKAMREEFFSERGRFNVLITHYDLIMR----DRQYLKKVQWIYMIVDEGHR 541 (1125)
Q Consensus 487 vy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~k----d~~~L~ki~w~~VIIDEAHr 541 (1125)
...+..+ .+..+.. .-...-|+|.+.|-. ...+.-.+.+.+=|.||+-.
T Consensus 74 --~~~p~~~-~L~~q~~---~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 --QQEPNSK-HLRRQLA---LLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred --hcCchhH-HHHHHHh---hccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0111111 1222221 123466788776633 23334445556666887654
No 438
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=51.58 E-value=43 Score=35.58 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=16.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 001197 427 LNGILADEMGLGKTIQTIALIAYL 450 (1125)
Q Consensus 427 ~~GILADEMGLGKTiqaIali~~L 450 (1125)
...+|..+-|.|||...-.++..+
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHh
Confidence 456788999999997654444433
No 439
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=51.08 E-value=1.9e+02 Score=33.37 Aligned_cols=118 Identities=16% Similarity=0.182 Sum_probs=65.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHh-hCCCceEEEEcCChhHHHHHHHHHHhhcCC
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST-WAPSIAAVVYDGRPDERKAMREEFFSERGR 508 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k-~~p~~~vivy~G~~~~R~~l~~~~~~~~~~ 508 (1125)
++..+-|.||+..|.+++.+++.... + .+ . .-+.. ..|++.++.-.|...
T Consensus 23 Lf~G~~G~Gk~~lA~~~A~~llC~~~---~------~~-c----~~~~~~~HPD~~~i~p~~~~~--------------- 73 (290)
T PRK05917 23 ILHGQDLSNLSARAYELASLILKETS---P------EA-A----YKISQKIHPDIHEFSPQGKGR--------------- 73 (290)
T ss_pred eeECCCCCcHHHHHHHHHHHHhCCCC---c------cH-H----HHHhcCCCCCEEEEecCCCCC---------------
Confidence 57899999999999999998876421 1 00 1 11111 235655443233210
Q ss_pred ccEEEecHHHHHHhHHhh--h--ccCeeEEEEcCCcccCC-hhhHHHHHHHccccceEEEeecCCCCCChHHHHHHh
Q 001197 509 FNVLITHYDLIMRDRQYL--K--KVQWIYMIVDEGHRLKN-HECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLL 580 (1125)
Q Consensus 509 fdVvITTYe~l~kd~~~L--~--ki~w~~VIIDEAHriKN-~~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL 580 (1125)
..+-+.++.-...+ . .-.+.++|||+||.|.. ....+-+.+..-+..-.++|..+-...-++-+.|=+
T Consensus 74 ----~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRc 146 (290)
T PRK05917 74 ----LHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS 146 (290)
T ss_pred ----cCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcc
Confidence 01122222111111 1 13688999999999964 334566666666666677777665444444555433
No 440
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=50.49 E-value=53 Score=34.28 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=55.8
Q ss_pred hhcchHHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHh-CCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEee
Q 001197 714 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL-NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 792 (1125)
Q Consensus 714 ~~S~Kle~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~-~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLS 792 (1125)
..++++..+-+|+.+....|+||+|.|.....+..|-+.|=. ..-.|+- ||..... -....+ ++|+
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlP-H~~~~~~---------~~a~~P---V~L~ 76 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIP-HGSKLDP---------QPEKQP---IYIT 76 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCC-CCCCCCC---------CCCCCC---EEEe
Confidence 357789999999999999999999999999999999988843 2222221 2211100 011233 3554
Q ss_pred ccccccccCCCCCCEEEEeCCCC
Q 001197 793 TRAGGLGLNLQTADTVIIFDSDW 815 (1125)
Q Consensus 793 TrAGG~GLNLq~Ad~VIi~D~~W 815 (1125)
.++.+.| .++.+|++++-+
T Consensus 77 --~~~~~p~--~~~vLiNL~~~~ 95 (154)
T PRK06646 77 --DELQNPN--NASVLVIISPTD 95 (154)
T ss_pred --cCCCCCC--CCCEEEECCCcc
Confidence 2334445 788899998854
No 441
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=50.24 E-value=39 Score=41.60 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=19.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHH
Q 001197 426 NLNGILADEMGLGKTIQTIALIAY 449 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~ 449 (1125)
..|.+|..+.|+|||..+=+++..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 345688999999999988777643
No 442
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=50.16 E-value=67 Score=39.52 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=42.5
Q ss_pred HHHHHHHHHHh-hccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhh
Q 001197 412 QLEGLQWMLSL-FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 479 (1125)
Q Consensus 412 Q~egv~wml~l-~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~ 479 (1125)
-..++.-|+.- +..+--.++.-+.|.|||..++.++...... ..++|+|.---...|-......+
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~---ge~~~y~s~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN---KERAILFAYEESRAQLLRNAYSW 313 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEeeCCHHHHHHHHHHc
Confidence 34556655532 2223334789999999999998888776553 24778887666666655555554
No 443
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=49.73 E-value=22 Score=39.77 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=25.4
Q ss_pred HHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 001197 418 WMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 418 wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e 452 (1125)
+|......+.+.+++.++|+|||-+.-+++.++-.
T Consensus 119 ~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 119 FLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp HHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred HHhhccccceEEEEECCCccccchHHHHHhhhccc
Confidence 44444455677788999999999988777765443
No 444
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=49.71 E-value=69 Score=39.76 Aligned_cols=133 Identities=17% Similarity=0.145 Sum_probs=72.7
Q ss_pred CCCccHHHHHHHHHHHHhhccCCC------eEEEcCCCchHHHHHHHHHHH--HHHccCCCCCEEEEcCccc-HHHHHHH
Q 001197 405 GGELRAYQLEGLQWMLSLFNNNLN------GILADEMGLGKTIQTIALIAY--LLENKGVTGPHVIVAPKAV-LPNWINE 475 (1125)
Q Consensus 405 g~~LrpYQ~egv~wml~l~~~~~~------GILADEMGLGKTiqaIali~~--L~e~~~~~gp~LIVvP~sl-l~qW~~E 475 (1125)
+..|-|||.-.+.-+.-.++.+.+ +++--.=|=|||-.+.+++.+ ++.. .....++|++|.-- ..+--.+
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-~~~~~~~i~A~s~~qa~~~F~~ 137 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-RSGAGIYILAPSVEQAANSFNP 137 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-hcCCcEEEEeccHHHHHHhhHH
Confidence 357999999999888877766655 367778899999776555544 3343 33346788887622 2222222
Q ss_pred HHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHH------HHHHhHHhhhccCeeEEEEcCCcccCChhhHH
Q 001197 476 FSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYD------LIMRDRQYLKKVQWIYMIVDEGHRLKNHECAL 549 (1125)
Q Consensus 476 f~k~~p~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe------~l~kd~~~L~ki~w~~VIIDEAHriKN~~Skl 549 (1125)
+....-... .-+..... ....+.|+.-. .+..+...+...+..+.|+||-|..++.. .+
T Consensus 138 ar~mv~~~~--------~l~~~~~~------q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~-~~ 202 (546)
T COG4626 138 ARDMVKRDD--------DLRDLCNV------QTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE-DM 202 (546)
T ss_pred HHHHHHhCc--------chhhhhcc------ccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-HH
Confidence 221110000 00100000 11112221111 12234455667789999999999999876 33
Q ss_pred HHHH
Q 001197 550 AKTI 553 (1125)
Q Consensus 550 skaL 553 (1125)
...+
T Consensus 203 ~~~~ 206 (546)
T COG4626 203 YSEA 206 (546)
T ss_pred HHHH
Confidence 3333
No 445
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=49.25 E-value=83 Score=45.37 Aligned_cols=133 Identities=17% Similarity=0.148 Sum_probs=70.3
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCC-CCCEEEEcCcccHHHHHHHHHhhCCCce
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVAPKAVLPNWINEFSTWAPSIA 484 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~-~gp~LIVvP~sll~qW~~Ef~k~~p~~~ 484 (1125)
..|-+-|..++..++.. .+.-.++-..-|+|||.+..+++..+.+.... ...++.++|+.-.. .++..-
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~--~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa---~~L~~~----- 1087 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIST--KDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAV---GELKSA----- 1087 (1960)
T ss_pred CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHH---HHHHhc-----
Confidence 47999999999877652 22334667889999998875443333222111 23566677874432 333221
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHcc-ccceEEE
Q 001197 485 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-QIQRRLL 563 (1125)
Q Consensus 485 vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l-~s~~RLl 563 (1125)
|-.. . .+ ..+.. .+. ..... -....-+++|||||-.+.+. .+...+... .+..+++
T Consensus 1088 -----g~~a-~-Ti-~s~l~---~~~-------~~~~~---~~~~~~~v~ivDEasMv~~~--~~~~l~~~~~~~~ak~v 1144 (1960)
T TIGR02760 1088 -----GVQA-Q-TL-DSFLT---DIS-------LYRNS---GGDFRNTLFILDESSMVSNF--QLTHATELVQKSGSRAV 1144 (1960)
T ss_pred -----CCch-H-hH-HHHhc---Ccc-------ccccc---CCCCcccEEEEEccccccHH--HHHHHHHhccCCCCEEE
Confidence 1100 0 00 11110 000 00000 00224579999999887654 333333333 4557899
Q ss_pred eecCCCCC
Q 001197 564 LTGTPIQN 571 (1125)
Q Consensus 564 LTGTPlqN 571 (1125)
|.|=|-|-
T Consensus 1145 lvGD~~QL 1152 (1960)
T TIGR02760 1145 SLGDIAQL 1152 (1960)
T ss_pred EeCChhhc
Confidence 99987553
No 446
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=49.09 E-value=47 Score=40.99 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=33.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhh
Q 001197 429 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 479 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~ 479 (1125)
.++..+.|+|||.-++.++...... ..++++|.-.....+-...+..+
T Consensus 276 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~~~yis~e~~~~~i~~~~~~~ 323 (509)
T PRK09302 276 ILVSGATGTGKTLLASKFAEAACRR---GERCLLFAFEESRAQLIRNARSW 323 (509)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEEecCCHHHHHHHHHHc
Confidence 3678999999999999888766543 34778887655555544444444
No 447
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=49.02 E-value=11 Score=47.30 Aligned_cols=82 Identities=15% Similarity=0.183 Sum_probs=50.0
Q ss_pred CEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCC-----HHHHHHHHHHHcCCCC-CceEEEee--ccccccccCCCC-
Q 001197 734 HRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK-----TEERGTLLKQFNAPDS-PYFMFLLS--TRAGGLGLNLQT- 804 (1125)
Q Consensus 734 ~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts-----~~eR~~~I~~Fn~~ds-~~~VfLLS--TrAGG~GLNLq~- 804 (1125)
.-|++|..+-..+..+...+...|+- .+|.|.-+ ..--..+++.|...-. ..-.+|++ -.-.++|||..+
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~ 708 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDD 708 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEeccccccccccccc
Confidence 45899999999999998888766542 12222110 0002456666653211 11124444 344678999997
Q ss_pred -CCEEEEeCCCCC
Q 001197 805 -ADTVIIFDSDWN 816 (1125)
Q Consensus 805 -Ad~VIi~D~~WN 816 (1125)
+..||+...|+-
T Consensus 709 LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 709 LGRAVVVVGLPYP 721 (821)
T ss_pred cccEEEEeecCCC
Confidence 889999988874
No 448
>PRK08506 replicative DNA helicase; Provisional
Probab=48.96 E-value=1.6e+02 Score=36.31 Aligned_cols=61 Identities=16% Similarity=0.105 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHH
Q 001197 413 LEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 476 (1125)
Q Consensus 413 ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef 476 (1125)
...+.-+..-+..+.=.|||..+|.|||.-++.++...... ..+++++..--...++...+
T Consensus 179 ~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~---g~~V~~fSlEMs~~ql~~Rl 239 (472)
T PRK08506 179 FVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQ---DKGVAFFSLEMPAEQLMLRM 239 (472)
T ss_pred hHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhc---CCcEEEEeCcCCHHHHHHHH
Confidence 34555554433334345889999999999999888776532 34788887765555555444
No 449
>PRK12608 transcription termination factor Rho; Provisional
Probab=48.54 E-value=52 Score=39.18 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 411 YQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 411 YQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
.-..++..++- ...+..++|..+.|+|||..+..++..+...
T Consensus 119 ~~~RvID~l~P-iGkGQR~LIvG~pGtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 119 LSMRVVDLVAP-IGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred hhHhhhhheee-cCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 33445555543 3456677888889999998887777766554
No 450
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=48.15 E-value=41 Score=36.55 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=36.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhC
Q 001197 427 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWA 480 (1125)
Q Consensus 427 ~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~ 480 (1125)
.-.+++-+.|+|||+.++.++....... ..++++|+-.....++.+.+..+.
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEESSS-HHHHHHHHHTTT
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEecCCHHHHHHHHHHcC
Confidence 3347899999999999998887665541 136788886666677777777654
No 451
>PRK07004 replicative DNA helicase; Provisional
Probab=48.11 E-value=1.5e+02 Score=36.42 Aligned_cols=61 Identities=16% Similarity=0.099 Sum_probs=39.2
Q ss_pred HHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHH
Q 001197 414 EGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 476 (1125)
Q Consensus 414 egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef 476 (1125)
.++.-+..-+..+.=.|||.-+|+|||.-++.++.+.... ...|++++..--.-.++..-+
T Consensus 201 ~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~--~~~~v~~fSlEM~~~ql~~R~ 261 (460)
T PRK07004 201 VDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE--YGLPVAVFSMEMPGTQLAMRM 261 (460)
T ss_pred HHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHH--cCCeEEEEeCCCCHHHHHHHH
Confidence 3455444433333335889999999999999888765432 235788887665555555444
No 452
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=48.11 E-value=53 Score=38.11 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=17.1
Q ss_pred CCchHHHHHHHHHHHHHHcc
Q 001197 435 MGLGKTIQTIALIAYLLENK 454 (1125)
Q Consensus 435 MGLGKTiqaIali~~L~e~~ 454 (1125)
=|+|||=.++.++.++...+
T Consensus 39 GGTGKTP~v~~La~~l~~~G 58 (311)
T TIGR00682 39 GGTGKTPVVVWLAELLKDRG 58 (311)
T ss_pred CCcChHHHHHHHHHHHHHCC
Confidence 49999999999999887753
No 453
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=47.85 E-value=2.4e+02 Score=30.27 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=38.5
Q ss_pred HHhhhccCeeEEEEcCCcccCCh----hhHHHHHHHccccceEEEeecCCCCCChHHHHHHhhcc
Q 001197 523 RQYLKKVQWIYMIVDEGHRLKNH----ECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFL 583 (1125)
Q Consensus 523 ~~~L~ki~w~~VIIDEAHriKN~----~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL 583 (1125)
...+..-.|++||+||.-..-+. ...+...|..-+..--++|||- |-..+|..+.+++
T Consensus 108 ~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR---~~p~~Lie~AD~V 169 (178)
T PRK07414 108 QAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGP---EMPESLLAIADQI 169 (178)
T ss_pred HHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECC---CCCHHHHHhCCee
Confidence 34455678999999998765442 2345555555566668999997 5566666655544
No 454
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=47.84 E-value=26 Score=45.41 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=27.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHH
Q 001197 427 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 472 (1125)
Q Consensus 427 ~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW 472 (1125)
.+.+|..+.|+|||..+-+++..+ ..+++.|-+..++..|
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPEILSKW 527 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHhhcc
Confidence 445789999999999887776543 2367766665554443
No 455
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=47.40 E-value=41 Score=42.91 Aligned_cols=67 Identities=21% Similarity=0.179 Sum_probs=45.1
Q ss_pred ccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccC-CCCCEEEEcCc-ccHHHHHHHHHhhC
Q 001197 408 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPK-AVLPNWINEFSTWA 480 (1125)
Q Consensus 408 LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~-~~gp~LIVvP~-sll~qW~~Ef~k~~ 480 (1125)
|-|-|.++|.+ ...+.++-...|+|||.+.+.-+.+++...+ ....+|+|+.+ .....-...+.+..
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889998853 1334555667999999999999999997533 33456777644 55555555555443
No 456
>PHA00012 I assembly protein
Probab=47.35 E-value=36 Score=39.75 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~ 453 (1125)
++..-.|.|||+.|++-|...+..
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHc
Confidence 345568999999999876665554
No 457
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=47.07 E-value=6.2e+02 Score=33.99 Aligned_cols=84 Identities=18% Similarity=-0.010 Sum_probs=60.2
Q ss_pred CCCCCchhhhHhHHHHHHhccchHHHHHHHHHHHHHhHhhhhcCCCCchhhhhh-hhhccCcccCCCcccccchhHHHhh
Q 001197 131 LPSSRGEELQTKCLLELYGLKLAELQSKVRSDVSSEYWLRMTCAFPEKQLFDWG-MMRLRRPLYGVGDAFATEADDHFRK 209 (1125)
Q Consensus 131 ~~~~~~~~~~~~~~~e~~~l~l~~~q~~~r~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (1125)
||..-..+++.+.+....+++|-.+|..+|.. ..+++....|.....+|.++. .+|.....+.+.+.....+...+.-
T Consensus 128 l~~~~~~~~q~~~i~~~~~~~lq~~q~~~~~~-~~~~~~~a~~e~~~lrl~~~q~qlr~~~~~~~~~~~~~~~~~n~~~~ 206 (1157)
T KOG0386|consen 128 LDQQNINPMQQARIQFRMQAQLQELQQLARSL-MGELKSSAVGEDQALRLLMLQMQLRNPVSQPLRRDSSSETALNPKAF 206 (1157)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHhhhcc-hHHHhhhhhhhhHHHHhHHHHHHHhhhhhcccccccccccccCHHHH
Confidence 44445567888888888899999999998877 667777778888888888777 4455555556677777776655555
Q ss_pred HHHHHH
Q 001197 210 KRDAER 215 (1125)
Q Consensus 210 ~~~~~~ 215 (1125)
+|..+.
T Consensus 207 ~R~~~q 212 (1157)
T KOG0386|consen 207 KRGKRQ 212 (1157)
T ss_pred hhhhhh
Confidence 555444
No 458
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=47.01 E-value=9.9 Score=40.46 Aligned_cols=120 Identities=18% Similarity=0.152 Sum_probs=42.9
Q ss_pred EcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhC-CCceEEEEcCChhHHHHHHHHHHhhcCCcc
Q 001197 432 ADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWA-PSIAAVVYDGRPDERKAMREEFFSERGRFN 510 (1125)
Q Consensus 432 ADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~-p~~~vivy~G~~~~R~~l~~~~~~~~~~fd 510 (1125)
-.+=|-|||-..-.+++.+..... ..++|.+|..--- ..+-.++ ..+..+-|............... .....
T Consensus 3 tA~RGRGKSa~lGl~~a~l~~~~~--~~I~vtAP~~~~~---~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~ 75 (177)
T PF05127_consen 3 TADRGRGKSAALGLAAAALIQKGK--IRILVTAPSPENV---QTLFEFAEKGLKALGYKEEKKKRIGQIIKLR--FNKQR 75 (177)
T ss_dssp EE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S----HHHHHCC----------------------------CCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHhcC--ceEEEecCCHHHH---HHHHHHHHhhccccccccccccccccccccc--cccce
Confidence 344899999665444444433321 4688888873211 1222222 12222222221111000000000 02333
Q ss_pred EEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHccccceEEEeecCC
Q 001197 511 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTP 568 (1125)
Q Consensus 511 VvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l~s~~RLlLTGTP 568 (1125)
|-....+.+... ....|++|||||=-|- -..+.+. +....++++|.|-
T Consensus 76 i~f~~Pd~l~~~-----~~~~DlliVDEAAaIp--~p~L~~l---l~~~~~vv~stTi 123 (177)
T PF05127_consen 76 IEFVAPDELLAE-----KPQADLLIVDEAAAIP--LPLLKQL---LRRFPRVVFSTTI 123 (177)
T ss_dssp --B--HHHHCCT---------SCEEECTGGGS---HHHHHHH---HCCSSEEEEEEEB
T ss_pred EEEECCHHHHhC-----cCCCCEEEEechhcCC--HHHHHHH---HhhCCEEEEEeec
Confidence 444444433221 2246899999996652 1122222 3456688888873
No 459
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=46.70 E-value=1.3e+02 Score=43.46 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=75.7
Q ss_pred cCCCCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccH-HHHHHHHHhhCC
Q 001197 403 LQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL-PNWINEFSTWAP 481 (1125)
Q Consensus 403 l~g~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll-~qW~~Ef~k~~p 481 (1125)
+.+..|-+-|.+++.-++.. .+.-.||--.-|+|||.+.-+++.. ++.. ...+++++|.... .....+...-..
T Consensus 425 ~~~~~Ls~~Q~~Av~~il~s--~~~v~ii~G~aGTGKTt~l~~l~~~-~~~~--G~~V~~lAPTgrAA~~L~e~~g~~A~ 499 (1960)
T TIGR02760 425 LSEFALSPSNKDAVSTLFTS--TKRFIIINGFGGTGSTEIAQLLLHL-ASEQ--GYEIQIITAGSLSAQELRQKIPRLAS 499 (1960)
T ss_pred cccCCCCHHHHHHHHHHHhC--CCCeEEEEECCCCCHHHHHHHHHHH-HHhc--CCeEEEEeCCHHHHHHHHHHhcchhh
Confidence 34568999999999877652 2233577788999999776555544 3332 3478888998543 333333221100
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhhHHHHHHHcc-ccce
Q 001197 482 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-QIQR 560 (1125)
Q Consensus 482 ~~~vivy~G~~~~R~~l~~~~~~~~~~fdVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~SklskaL~~l-~s~~ 560 (1125)
.+ .......+ .... ..|...|..... .-..-++||||||..+-.. .+...+... ....
T Consensus 500 Ti------------~~~l~~l~----~~~~-~~tv~~fl~~~~--~l~~~~vlIVDEAsMl~~~--~~~~Ll~~a~~~ga 558 (1960)
T TIGR02760 500 TF------------ITWVKNLF----NDDQ-DHTVQGLLDKSS--PFSNKDIFVVDEANKLSNN--ELLKLIDKAEQHNS 558 (1960)
T ss_pred hH------------HHHHHhhc----cccc-chhHHHhhcccC--CCCCCCEEEEECCCCCCHH--HHHHHHHHHhhcCC
Confidence 00 00000000 0010 111111111000 1124579999999987432 233333333 4678
Q ss_pred EEEeecCCCCCC
Q 001197 561 RLLLTGTPIQNS 572 (1125)
Q Consensus 561 RLlLTGTPlqN~ 572 (1125)
+++|-|=+-|..
T Consensus 559 rvVlvGD~~QL~ 570 (1960)
T TIGR02760 559 KLILLNDSAQRQ 570 (1960)
T ss_pred EEEEEcChhhcC
Confidence 888888876654
No 460
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=46.26 E-value=38 Score=39.99 Aligned_cols=60 Identities=22% Similarity=0.301 Sum_probs=44.4
Q ss_pred CccHHHHHHHHHHHHhhc--cCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccH
Q 001197 407 ELRAYQLEGLQWMLSLFN--NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL 469 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~--~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll 469 (1125)
+|-+-|..++.+++.... .+.+-.|...-|+|||...=+++.++.. ...++++++|+.+.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~---~~~~~~~~a~tg~A 62 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS---RGKKVLVTAPTGIA 62 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc---ccceEEEecchHHH
Confidence 467789999998877653 3444578899999999988777776644 23478889997554
No 461
>PRK08939 primosomal protein DnaI; Reviewed
Probab=45.94 E-value=49 Score=38.26 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=22.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHc
Q 001197 427 LNGILADEMGLGKTIQTIALIAYLLEN 453 (1125)
Q Consensus 427 ~~GILADEMGLGKTiqaIali~~L~e~ 453 (1125)
.|-+|...+|+|||..+.|++..+...
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~ 183 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKK 183 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 345688899999999999999888753
No 462
>PRK05973 replicative DNA helicase; Provisional
Probab=45.89 E-value=49 Score=36.94 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=33.4
Q ss_pred HHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHH
Q 001197 419 MLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN 471 (1125)
Q Consensus 419 ml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~q 471 (1125)
+..-+..+.-.+|+...|+|||+-++-++...... ..+++++.--..-.+
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vlyfSlEes~~~ 106 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVFFTLEYTEQD 106 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEEeCCHHH
Confidence 33334444455889999999999999888776543 347777774433333
No 463
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.87 E-value=1.5e+02 Score=37.89 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=27.2
Q ss_pred CCccCCCCccHHHHHHHH-HHHHhhccC--CC-eEEEcCCCchHHHHHHHHHH
Q 001197 400 PTLLQGGELRAYQLEGLQ-WMLSLFNNN--LN-GILADEMGLGKTIQTIALIA 448 (1125)
Q Consensus 400 P~~l~g~~LrpYQ~egv~-wml~l~~~~--~~-GILADEMGLGKTiqaIali~ 448 (1125)
|..+...-..+.++.-|. |+....... .. .+|..+.|+|||..+-.++.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 444443444555555454 333322111 12 57899999999987765554
No 464
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=45.64 E-value=47 Score=42.97 Aligned_cols=66 Identities=18% Similarity=0.111 Sum_probs=44.1
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCC-CCCEEEEcCc-ccHHHHHHHHHh
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVAPK-AVLPNWINEFST 478 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~-~gp~LIVvP~-sll~qW~~Ef~k 478 (1125)
.|-|-|.++|.+- ....++-...|+|||.+.+.-+++|+...+. ...+|+|+-+ .....-..-+.+
T Consensus 9 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~ 76 (721)
T PRK11773 9 SLNDKQREAVAAP------LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQ 76 (721)
T ss_pred hcCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHH
Confidence 5899999998621 2344555569999999999999999975432 3457777765 333333333433
No 465
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.49 E-value=1.8e+02 Score=35.49 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=57.1
Q ss_pred CCEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecccccccc-------CCCCC
Q 001197 733 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL-------NLQTA 805 (1125)
Q Consensus 733 g~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAGG~GL-------NLq~A 805 (1125)
+..+||.++....+.-....|...|+....+.|+.+..++..++.....+. +.+++++........ .+...
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~--~~il~~TPe~l~~~~~~~~~l~~~~~i 128 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGK--IKLLYVTPEKCSASNRLLQTLEERKGI 128 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHcCchhHHHHHHhcCCc
Confidence 446899999998887777778888999999999999999999888886654 446666655433222 34556
Q ss_pred CEEEEeC
Q 001197 806 DTVIIFD 812 (1125)
Q Consensus 806 d~VIi~D 812 (1125)
+.||+=+
T Consensus 129 ~~iViDE 135 (470)
T TIGR00614 129 TLIAVDE 135 (470)
T ss_pred CEEEEeC
Confidence 6766633
No 466
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.08 E-value=46 Score=42.90 Aligned_cols=134 Identities=19% Similarity=0.202 Sum_probs=74.6
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCc-----------ccHHHHHHH
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-----------AVLPNWINE 475 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~-----------sll~qW~~E 475 (1125)
.+.-||.-|+. -..|.||..+.|+|||+-|-|++. ...-|++-|+=. +.+..--..
T Consensus 332 NP~~Y~~lGAK-------iPkGvLL~GPPGTGKTLLAKAiAG------EAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ 398 (774)
T KOG0731|consen 332 NPEQYQELGAK-------IPKGVLLVGPPGTGKTLLAKAIAG------EAGVPFFSVSGSEFVEMFVGVGASRVRDLFPL 398 (774)
T ss_pred CHHHHHHcCCc-------CcCceEEECCCCCcHHHHHHHHhc------ccCCceeeechHHHHHHhcccchHHHHHHHHH
Confidence 45667777763 356789999999999999988773 122355444322 222222222
Q ss_pred HHhhCCCceEE-------------EEcCChhHHHHHHHHHHhhcCCcc-----EEEecHHHH-HHhHHhhhccCeeEEEE
Q 001197 476 FSTWAPSIAAV-------------VYDGRPDERKAMREEFFSERGRFN-----VLITHYDLI-MRDRQYLKKVQWIYMIV 536 (1125)
Q Consensus 476 f~k~~p~~~vi-------------vy~G~~~~R~~l~~~~~~~~~~fd-----VvITTYe~l-~kd~~~L~ki~w~~VII 536 (1125)
.+..+|.+..+ ...|...+|....+++......|. |++.+-... .-|...++.-+||..|.
T Consensus 399 ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~ 478 (774)
T KOG0731|consen 399 ARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQ 478 (774)
T ss_pred hhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCcccccee
Confidence 33333432211 133455566666655544333332 333332221 23566777889999998
Q ss_pred cCCcccCChhhHHHHHH
Q 001197 537 DEGHRLKNHECALAKTI 553 (1125)
Q Consensus 537 DEAHriKN~~SklskaL 553 (1125)
+.--.++...+-+-..+
T Consensus 479 i~~p~~~~r~~i~~~h~ 495 (774)
T KOG0731|consen 479 IDLPDVKGRASILKVHL 495 (774)
T ss_pred ccCCchhhhHHHHHHHh
Confidence 88777766554444333
No 467
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=44.97 E-value=3.9e+02 Score=28.01 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=43.9
Q ss_pred CCCEEEEEeccchHHHHHH----HHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeeccc-----cccccCC
Q 001197 732 SGHRVLLFSQMTRLMDILE----IYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA-----GGLGLNL 802 (1125)
Q Consensus 732 ~g~KVLIFsq~t~~ldiLe----~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrA-----GG~GLNL 802 (1125)
.+.++||.+.....+..+. .+....++.+..++|+.+..+....+. .+ +.|++.+... -..-.++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~iiv~T~~~l~~~l~~~~~~~ 141 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RG--PHIVVATPGRLLDLLERGKLDL 141 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CC--CCEEEEChHHHHHHHHcCCCCh
Confidence 4678999999877665544 444445888899999988765544332 12 3344444321 1112566
Q ss_pred CCCCEEEE
Q 001197 803 QTADTVII 810 (1125)
Q Consensus 803 q~Ad~VIi 810 (1125)
...+.+|+
T Consensus 142 ~~l~~lIv 149 (203)
T cd00268 142 SKVKYLVL 149 (203)
T ss_pred hhCCEEEE
Confidence 66777665
No 468
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.69 E-value=97 Score=36.98 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=48.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRF 509 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p~~~vivy~G~~~~R~~l~~~~~~~~~~f 509 (1125)
+++.=.|.|||.++.-++.|+...+ .++.||.+-+. -.---..+..|+....+-+|.........
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kkkG--~K~~LvcaDTF-RagAfDQLkqnA~k~~iP~ygsyte~dpv------------ 169 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKKKG--YKVALVCADTF-RAGAFDQLKQNATKARVPFYGSYTEADPV------------ 169 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHhcC--CceeEEeeccc-ccchHHHHHHHhHhhCCeeEecccccchH------------
Confidence 3466689999988877777665532 44555555431 11122334444433444444321111000
Q ss_pred cEEEecHHHHHHhHHhhhccCeeEEEEcCCcccCChhh
Q 001197 510 NVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHEC 547 (1125)
Q Consensus 510 dVvITTYe~l~kd~~~L~ki~w~~VIIDEAHriKN~~S 547 (1125)
.....-...+++-+|++||+|=+-|.+-..+
T Consensus 170 -------~ia~egv~~fKke~fdvIIvDTSGRh~qe~s 200 (483)
T KOG0780|consen 170 -------KIASEGVDRFKKENFDVIIVDTSGRHKQEAS 200 (483)
T ss_pred -------HHHHHHHHHHHhcCCcEEEEeCCCchhhhHH
Confidence 0011123445666788888887776655443
No 469
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=44.41 E-value=1.2e+02 Score=38.73 Aligned_cols=92 Identities=23% Similarity=0.285 Sum_probs=69.7
Q ss_pred hcchHHH-HHHHhHHhhhCCCEEEEEeccc----hHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEE
Q 001197 715 ASGKFEL-LDRLLPKLRKSGHRVLLFSQMT----RLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMF 789 (1125)
Q Consensus 715 ~S~Kle~-L~~lL~kl~~~g~KVLIFsq~t----~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~Vf 789 (1125)
.|||--. +..++ .....|..+.+..+.- +..+-+..+|...|+.+..++|+++...|.+++..-.+++.+ +
T Consensus 293 GSGKTvVA~laml-~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~---i 368 (677)
T COG1200 293 GSGKTVVALLAML-AAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID---I 368 (677)
T ss_pred CCCHHHHHHHHHH-HHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC---E
Confidence 4666433 23333 2345688888887754 456778888888899999999999999999999999998887 6
Q ss_pred Eeeccc-cccccCCCCCCEEEE
Q 001197 790 LLSTRA-GGLGLNLQTADTVII 810 (1125)
Q Consensus 790 LLSTrA-GG~GLNLq~Ad~VIi 810 (1125)
++-|.| .-..++....-.||+
T Consensus 369 vVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 369 VVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred EEEcchhhhcceeecceeEEEE
Confidence 888888 456777777777775
No 470
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=44.28 E-value=6.3 Score=46.99 Aligned_cols=46 Identities=26% Similarity=0.506 Sum_probs=36.4
Q ss_pred ccccceEEEeecCCCCCChHHHHHHhhccCCCCCC--ChHHHHHHhcc
Q 001197 555 GYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFN--SVENFEEWFNA 600 (1125)
Q Consensus 555 ~l~s~~RLlLTGTPlqN~l~EL~sLL~fL~P~~f~--s~~~F~~~f~~ 600 (1125)
.++.++.+++||||+.|.+.|++++-+++.++.+- ....|..|...
T Consensus 470 ~~~G~~L~l~sgTpi~ntlgem~~vqRyl~~~al~ergl~~fd~wast 517 (637)
T COG4646 470 RNPGRALVLASGTPITNTLGEMFSVQRYLGAGALYERGLHEFDAWAST 517 (637)
T ss_pred cCCCCeEEecCCCchhhhHHhhhhhhhhcCccHHHHhhhhhhhhHHHH
Confidence 34678889999999999999999999999887643 34456666554
No 471
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=43.81 E-value=38 Score=39.00 Aligned_cols=44 Identities=27% Similarity=0.251 Sum_probs=29.8
Q ss_pred CCccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 001197 406 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 452 (1125)
Q Consensus 406 ~~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e 452 (1125)
+.+-+-|..-+. .....+.+.+++.+||+|||-.+-+++..+..
T Consensus 115 g~~~~~~~~~L~---~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 115 GIMTAAQRDVLR---EAVLARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCCCHHHHHHHH---HHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 344454544444 33445677889999999999888777765543
No 472
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=43.63 E-value=1.9e+02 Score=28.40 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=29.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHHhhCC
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAP 481 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~k~~p 481 (1125)
++.-..|.|||..+..+..++... ..++++|- ... ..+..++..+..
T Consensus 3 ~~~GkgG~GKTt~a~~la~~l~~~---g~~V~~id-~D~-~~~~~~~~~~~~ 49 (116)
T cd02034 3 AITGKGGVGKTTIAALLARYLAEK---GKPVLAID-ADP-DDLPERLSVEVG 49 (116)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEE-CCc-hhhHHHHhhccC
Confidence 567789999999998888777553 22444443 111 555555555543
No 473
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=43.62 E-value=1.6e+02 Score=37.17 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=46.2
Q ss_pred CCEEEEEeccchHHHHHHHHH----HhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeec-c----cc--ccccC
Q 001197 733 GHRVLLFSQMTRLMDILEIYL----KLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST-R----AG--GLGLN 801 (1125)
Q Consensus 733 g~KVLIFsq~t~~ldiLe~~L----~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLST-r----AG--G~GLN 801 (1125)
+-++||.+.....+..+.+.+ ...++.+..++|+.+.......+.. . +.| |++| . .. +..++
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~----~--~dI-iV~TP~rL~~~l~~~~~~~ 156 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQ----G--VDV-IIATPGRLIDYVKQHKVVS 156 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhC----C--CCE-EEECHHHHHHHHHhccccc
Confidence 458999999988776655544 3457889999999988766555542 2 234 4454 1 11 12466
Q ss_pred CCCCCEEEE
Q 001197 802 LQTADTVII 810 (1125)
Q Consensus 802 Lq~Ad~VIi 810 (1125)
|..+++||+
T Consensus 157 l~~v~~lVi 165 (572)
T PRK04537 157 LHACEICVL 165 (572)
T ss_pred hhheeeeEe
Confidence 777777766
No 474
>PRK05595 replicative DNA helicase; Provisional
Probab=43.46 E-value=1e+02 Score=37.55 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHH
Q 001197 413 LEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFS 477 (1125)
Q Consensus 413 ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~ 477 (1125)
..++.-++.-+..+.=.|+|..+|.|||.-++.++..+.... ..+++++..--...++...+-
T Consensus 188 ~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~--g~~vl~fSlEms~~~l~~R~~ 250 (444)
T PRK05595 188 FRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALRE--GKSVAIFSLEMSKEQLAYKLL 250 (444)
T ss_pred hHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHH
Confidence 345555554333343358899999999999998887653221 347888877655566555543
No 475
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=42.64 E-value=39 Score=38.20 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=31.8
Q ss_pred CccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHH
Q 001197 407 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLL 451 (1125)
Q Consensus 407 ~LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~ 451 (1125)
-+.+.|.+.+.+++. ......+++-++|+|||-..-+++.++.
T Consensus 63 g~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 63 GLKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 467888888877764 1122347899999999988888777653
No 476
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=42.25 E-value=1.5e+02 Score=31.47 Aligned_cols=124 Identities=15% Similarity=0.135 Sum_probs=62.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHH--HHHHHHHhhC-CCceEEEEcCChhHHHHHHHHHHh
Q 001197 428 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLP--NWINEFSTWA-PSIAAVVYDGRPDERKAMREEFFS 504 (1125)
Q Consensus 428 ~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~--qW~~Ef~k~~-p~~~vivy~G~~~~R~~l~~~~~~ 504 (1125)
.-.+....|.|||-.+.-++-.|.+..- ..-=|+||.---. -|--.+-... ..-..+.+.|. .+..
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~--kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~--~~~r------- 75 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGY--KVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGF--SRPR------- 75 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCc--eeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCC--CCcc-------
Confidence 3466788999999888777777766521 1122444421100 0000000000 11122233332 1111
Q ss_pred hcCCccEEEecHHHHHHhHHhhhc--cCeeEEEEcCCcccCChhhHHHHHHH-ccccceEEEee
Q 001197 505 ERGRFNVLITHYDLIMRDRQYLKK--VQWIYMIVDEGHRLKNHECALAKTIS-GYQIQRRLLLT 565 (1125)
Q Consensus 505 ~~~~fdVvITTYe~l~kd~~~L~k--i~w~~VIIDEAHriKN~~SklskaL~-~l~s~~RLlLT 565 (1125)
.++|.|.+-..+-+.- ..+.+ -.-|++||||.--|-...-+...++. -+++...++.|
T Consensus 76 -vGkY~V~v~~le~i~~--~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliat 136 (179)
T COG1618 76 -VGKYGVNVEGLEEIAI--PALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIAT 136 (179)
T ss_pred -cceEEeeHHHHHHHhH--HHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEE
Confidence 1566666655553322 11221 13689999999988777667777774 44565554443
No 477
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=41.97 E-value=71 Score=34.71 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=33.0
Q ss_pred HHHHHHH-hhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHH
Q 001197 415 GLQWMLS-LFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN 471 (1125)
Q Consensus 415 gv~wml~-l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~q 471 (1125)
++.-++. -+..+...+++.+.|+|||..+..++...... ..++++|+-.....+
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~e~~~~~ 62 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTTEESRES 62 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEccCCHHH
Confidence 4444442 22334445789999999999998887655443 236677765443333
No 478
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=41.85 E-value=38 Score=36.20 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=26.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEc-Cc
Q 001197 426 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA-PK 466 (1125)
Q Consensus 426 ~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVv-P~ 466 (1125)
..+.+++..+|+|||....+++..+.........-|+|+ |.
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 347899999999999999888888877433333445555 54
No 479
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=41.70 E-value=41 Score=34.18 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=19.8
Q ss_pred hccCCCeEEEcCCCchHHHHHHHHHHHH
Q 001197 423 FNNNLNGILADEMGLGKTIQTIALIAYL 450 (1125)
Q Consensus 423 ~~~~~~GILADEMGLGKTiqaIali~~L 450 (1125)
...+.-.+|..++|.|||.-+=+++..+
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3344445688999999998776666554
No 480
>PRK08006 replicative DNA helicase; Provisional
Probab=41.64 E-value=3.5e+02 Score=33.33 Aligned_cols=61 Identities=15% Similarity=0.015 Sum_probs=40.0
Q ss_pred HHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHHHH
Q 001197 415 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFS 477 (1125)
Q Consensus 415 gv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~Ef~ 477 (1125)
.+..+..-+..+.=.|||.-+|+|||.-++.++...... ...|++++..--...++..-+-
T Consensus 213 ~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~--~g~~V~~fSlEM~~~ql~~Rll 273 (471)
T PRK08006 213 DLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAML--QDKPVLIFSLEMPGEQIMMRML 273 (471)
T ss_pred HHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCeEEEEeccCCHHHHHHHHH
Confidence 455555444444445899999999999998887765432 2347888877655566554443
No 481
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=41.54 E-value=1.2e+02 Score=28.87 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=39.0
Q ss_pred CCCEEEEEec------cchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCC
Q 001197 732 SGHRVLLFSQ------MTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAP 782 (1125)
Q Consensus 732 ~g~KVLIFsq------~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ 782 (1125)
..++|+||+. +-.....+..+|...|++|..+|=....+.+..+.......
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~ 66 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWP 66 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCC
Confidence 3589999975 34567888999999999999988766677777766665543
No 482
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=41.37 E-value=75 Score=37.57 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=31.0
Q ss_pred ccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHH
Q 001197 424 NNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI 473 (1125)
Q Consensus 424 ~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~ 473 (1125)
....|.+|-.+.|+|||+.|=|.+... .-.||=|+-.-++.-+.
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T------~AtFIrvvgSElVqKYi 226 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQT------DATFIRVVGSELVQKYI 226 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc------CceEEEeccHHHHHHHh
Confidence 356778999999999999987776432 23566666666665543
No 483
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=41.13 E-value=1.1e+02 Score=35.14 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHH
Q 001197 408 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALI 447 (1125)
Q Consensus 408 LrpYQ~egv~wml~l~~~~~~GILADEMGLGKTiqaIali 447 (1125)
+--|+.-|+ ....|.||..+.|+|||+.|-|.+
T Consensus 208 PE~YeemGi-------kpPKGVIlyG~PGTGKTLLAKAVA 240 (440)
T KOG0726|consen 208 PEYYEEMGI-------KPPKGVILYGEPGTGKTLLAKAVA 240 (440)
T ss_pred HHHHHHcCC-------CCCCeeEEeCCCCCchhHHHHHHh
Confidence 344666665 256788999999999999887765
No 484
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=41.11 E-value=33 Score=39.77 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=33.1
Q ss_pred cCeeEEEEcCCcccC-ChhhHHHHHHHccccceEEEeecCCCCC
Q 001197 529 VQWIYMIVDEGHRLK-NHECALAKTISGYQIQRRLLLTGTPIQN 571 (1125)
Q Consensus 529 i~w~~VIIDEAHriK-N~~SklskaL~~l~s~~RLlLTGTPlqN 571 (1125)
..|.+||+|||..|. +....+.+.+..|+.+.|+++-+-|++-
T Consensus 130 ~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~k 173 (360)
T KOG0990|consen 130 AAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQK 173 (360)
T ss_pred CceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhh
Confidence 479999999999984 4556677777888999999966555433
No 485
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=40.78 E-value=1.4e+02 Score=31.77 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=32.2
Q ss_pred HHhhhccCeeEEEEcCCcccCCh----hhHHHHHHHccccceEEEeecCCCCCChHHHHHHhhcc
Q 001197 523 RQYLKKVQWIYMIVDEGHRLKNH----ECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFL 583 (1125)
Q Consensus 523 ~~~L~ki~w~~VIIDEAHriKN~----~SklskaL~~l~s~~RLlLTGTPlqN~l~EL~sLL~fL 583 (1125)
...+..-.|++||+||.-..-+. ...+...|..-+..--++|||--. ..+|..+.+++
T Consensus 89 ~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~---~~~l~e~ADlV 150 (172)
T PF02572_consen 89 KEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNA---PEELIEAADLV 150 (172)
T ss_dssp HHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS-----HHHHHH-SEE
T ss_pred HHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCC---CHHHHHhCCee
Confidence 44556678999999998665332 234555555556677899999744 45555555444
No 486
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=40.30 E-value=2.2e+02 Score=34.26 Aligned_cols=87 Identities=10% Similarity=0.142 Sum_probs=52.4
Q ss_pred CCEEEEEeccchHHHHHHH----HHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecccc-----ccccCCC
Q 001197 733 GHRVLLFSQMTRLMDILEI----YLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG-----GLGLNLQ 803 (1125)
Q Consensus 733 g~KVLIFsq~t~~ldiLe~----~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAG-----G~GLNLq 803 (1125)
+.++||.++....+..+.+ +....++.+..+.|++....+...+. . . ..|++.+.... ...+++.
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~---~-~--~~IlV~Tp~rl~~~~~~~~~~~~ 146 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS---E-N--QDIVVATPGRLLQYIKEENFDCR 146 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc---C-C--CCEEEEChHHHHHHHHcCCcCcc
Confidence 3589999998876655544 44456889999999998876655443 2 2 22444443211 2345677
Q ss_pred CCCEEEEeCC----CCChhhHHHHHh
Q 001197 804 TADTVIIFDS----DWNPQMDQQAED 825 (1125)
Q Consensus 804 ~Ad~VIi~D~----~WNP~~d~QAig 825 (1125)
..+.||+=+. +|......+.+.
T Consensus 147 ~v~~lViDEah~~l~~~~~~~~~~i~ 172 (434)
T PRK11192 147 AVETLILDEADRMLDMGFAQDIETIA 172 (434)
T ss_pred cCCEEEEECHHHHhCCCcHHHHHHHH
Confidence 7777776333 355444444443
No 487
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=39.91 E-value=1.5e+02 Score=38.83 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=22.8
Q ss_pred CeeEEEEcCCcccCChh--hHHHHHHHccccceEEEee
Q 001197 530 QWIYMIVDEGHRLKNHE--CALAKTISGYQIQRRLLLT 565 (1125)
Q Consensus 530 ~w~~VIIDEAHriKN~~--SklskaL~~l~s~~RLlLT 565 (1125)
+.-++|+|.-|+++|+. +.+...++..+..-.|++|
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~ 166 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT 166 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE
Confidence 45699999999999864 2334444444555444443
No 488
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=39.84 E-value=1.6e+02 Score=34.42 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=29.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHH
Q 001197 429 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN 471 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~q 471 (1125)
..++-+.|+|||..++.++...... .+++++|.....+.+
T Consensus 58 teI~G~~GsGKTtLaL~~~~~~~~~---g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 58 IEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDP 97 (321)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEcccchhHH
Confidence 3578999999999999888776553 467777766554443
No 489
>PHA00350 putative assembly protein
Probab=39.68 E-value=57 Score=39.20 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=13.3
Q ss_pred EEEcCCCchHHHHHHHH
Q 001197 430 ILADEMGLGKTIQTIAL 446 (1125)
Q Consensus 430 ILADEMGLGKTiqaIal 446 (1125)
|+-.-.|+|||.-|+..
T Consensus 5 l~tG~pGSGKT~~aV~~ 21 (399)
T PHA00350 5 AIVGRPGSYKSYEAVVY 21 (399)
T ss_pred EEecCCCCchhHHHHHH
Confidence 34556899999999874
No 490
>PRK05636 replicative DNA helicase; Provisional
Probab=39.59 E-value=1.7e+02 Score=36.39 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=36.4
Q ss_pred HHHHHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHHH
Q 001197 414 EGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINE 475 (1125)
Q Consensus 414 egv~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~E 475 (1125)
..|.-+..-+..+.=.|||..+|.|||.-++.++....... ..+++++..--...++..-
T Consensus 253 ~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~--g~~v~~fSlEMs~~ql~~R 312 (505)
T PRK05636 253 KDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKH--NKASVIFSLEMSKSEIVMR 312 (505)
T ss_pred HHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEeeCCHHHHHHH
Confidence 34544443233333348899999999999888776544221 3477887665544554433
No 491
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.42 E-value=56 Score=40.19 Aligned_cols=108 Identities=16% Similarity=0.299 Sum_probs=79.1
Q ss_pred HHHHhHHhhhCC-CEEEEEeccchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecccc-ccc
Q 001197 722 LDRLLPKLRKSG-HRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG-GLG 799 (1125)
Q Consensus 722 L~~lL~kl~~~g-~KVLIFsq~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTrAG-G~G 799 (1125)
...+++.+...+ .-+||+.+.=--.-.+..|++..++.|.-++--++...-..+-+-|..+... |+|.+-++- =.-
T Consensus 540 v~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~--vlLyTER~hffrR 617 (698)
T KOG2340|consen 540 VDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKS--VLLYTERAHFFRR 617 (698)
T ss_pred HHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCce--EEEEehhhhhhhh
Confidence 566788877554 3467776654334457788888889999998888888888888899887754 677777763 345
Q ss_pred cCCCCCCEEEEeCCCCChhhHHHH---HhhhcccC
Q 001197 800 LNLQTADTVIIFDSDWNPQMDQQA---EDRAHRIG 831 (1125)
Q Consensus 800 LNLq~Ad~VIi~D~~WNP~~d~QA---igRahRIG 831 (1125)
-.+.+...||+|.||-||+-|.-- ++|.--.|
T Consensus 618 ~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~g 652 (698)
T KOG2340|consen 618 YHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQG 652 (698)
T ss_pred heecceeeEEEecCCCCcHHHHHHHhhhhhhhccC
Confidence 667889999999999999977643 34554445
No 492
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=39.30 E-value=2.8e+02 Score=29.52 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=26.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcc
Q 001197 430 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA 467 (1125)
Q Consensus 430 ILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~s 467 (1125)
.+..+.|+|||..++.++...... ..+++.|.-..
T Consensus 16 ~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e~ 50 (209)
T TIGR02237 16 QIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTEG 50 (209)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCC
Confidence 578899999999998888776543 34666666543
No 493
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=39.27 E-value=1.4e+02 Score=27.85 Aligned_cols=46 Identities=20% Similarity=0.129 Sum_probs=35.4
Q ss_pred CCEEEEEec------cchHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHH
Q 001197 733 GHRVLLFSQ------MTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQ 778 (1125)
Q Consensus 733 g~KVLIFsq------~t~~ldiLe~~L~~~gi~~~rLdGsts~~eR~~~I~~ 778 (1125)
.++|+||+. +-.....+..+|...|++|..++=....+.+..+.+.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~ 58 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEY 58 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHH
Confidence 579999987 4557788899999999999998865566556655554
No 494
>PHA02542 41 41 helicase; Provisional
Probab=39.23 E-value=2.6e+02 Score=34.55 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=36.6
Q ss_pred HHHHHHH-HhhccCCCeEEEcCCCchHHHHHHHHHHHHHHccCCCCCEEEEcCcccHHHHHH
Q 001197 414 EGLQWML-SLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 474 (1125)
Q Consensus 414 egv~wml-~l~~~~~~GILADEMGLGKTiqaIali~~L~e~~~~~gp~LIVvP~sll~qW~~ 474 (1125)
..+.-|+ .-+..+-=.|+|..+|.|||..++.++...... ..|+|++.----..++..
T Consensus 177 ~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~---g~~Vl~fSLEM~~~ql~~ 235 (473)
T PHA02542 177 EILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQ---GYNVLYISMEMAEEVIAK 235 (473)
T ss_pred HHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhc---CCcEEEEeccCCHHHHHH
Confidence 3555555 223333335889999999999999888776532 357777764333344433
No 495
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=38.58 E-value=1.1e+02 Score=34.03 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=24.5
Q ss_pred HHHHHHH-HHHHHhhccCCCeEEEcCCCchHHHHHHHHHHHHH
Q 001197 410 AYQLEGL-QWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLL 451 (1125)
Q Consensus 410 pYQ~egv-~wml~l~~~~~~GILADEMGLGKTiqaIali~~L~ 451 (1125)
+..++-| .++.....+..-..|...-|.|||..|..++....
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~ 44 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLR 44 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccc
Confidence 4445444 33333222222234678899999999988775543
No 496
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=38.42 E-value=68 Score=32.62 Aligned_cols=79 Identities=19% Similarity=0.187 Sum_probs=43.3
Q ss_pred HHHHHHHhHHhhhCCCEEEEEeccchHHHHHHHHHHhC-C---CeEEEecCCCCHHHHHHHHHHHcCCCCCceEEEeecc
Q 001197 719 FELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN-D---FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 794 (1125)
Q Consensus 719 le~L~~lL~kl~~~g~KVLIFsq~t~~ldiLe~~L~~~-g---i~~~rLdGsts~~eR~~~I~~Fn~~ds~~~VfLLSTr 794 (1125)
...+-+++.+....|+||+|+|+....++.|-+.|-.. . ++..+ .|.-.. ...+ ++|++.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~-~~~~~~------------~~~P---V~i~~~ 78 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGL-AGEPPA------------ARQP---VLITWD 78 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEE-TT-SST------------T--S---EEEE-T
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcc-cCCCCC------------CCCe---EEEecC
Confidence 57888999999999999999999999999999988433 2 22222 222111 1123 455543
Q ss_pred ccccccCCCCCCEEEEeCCCC
Q 001197 795 AGGLGLNLQTADTVIIFDSDW 815 (1125)
Q Consensus 795 AGG~GLNLq~Ad~VIi~D~~W 815 (1125)
... -....++.+|++++.+
T Consensus 79 ~~~--~~~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 79 QEA--NPNNHADVLINLSGEV 97 (137)
T ss_dssp TS------S--SEEEE--SS-
T ss_pred ccc--CCCCCCCEEEECCCCC
Confidence 322 2234589999999887
No 497
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=38.32 E-value=95 Score=40.33 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=18.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 001197 429 GILADEMGLGKTIQTIALIAYL 450 (1125)
Q Consensus 429 GILADEMGLGKTiqaIali~~L 450 (1125)
-++..++|+|||..|-++...+
T Consensus 487 ~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 487 FLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred EEEECCCCccHHHHHHHHHHHh
Confidence 3789999999999988877655
No 498
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=38.28 E-value=1.6e+02 Score=38.29 Aligned_cols=44 Identities=27% Similarity=0.332 Sum_probs=33.9
Q ss_pred HHhhcchHHHHHHHhHH-hhh---------CCCEEEEEeccchHHHHHHHHHHh
Q 001197 712 IIRASGKFELLDRLLPK-LRK---------SGHRVLLFSQMTRLMDILEIYLKL 755 (1125)
Q Consensus 712 li~~S~Kle~L~~lL~k-l~~---------~g~KVLIFsq~t~~ldiLe~~L~~ 755 (1125)
.....+|++.|.++|.+ ... ....|||-|.+-.+.-.+.++|..
T Consensus 347 ~lE~~pKw~~Ltdil~~e~~~~~~~~~~~~~~~~Vlv~c~dertC~ql~d~lt~ 400 (892)
T KOG0442|consen 347 ELEECPKWEVLTDILFKEIEHEKERADRSNDQGSVLVACSDERTCAQLRDYLTL 400 (892)
T ss_pred ccccCCCcHHHHHHHHhhhhhHHHHhhhcCCCCceEEEeccchhHHHHHHHHhc
Confidence 34578999999999932 221 223699999999999999999885
No 499
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=38.24 E-value=1.1e+02 Score=36.26 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=22.0
Q ss_pred CeeEEEEcCCcccCChhhHHHHHHHccccceEEEeecCCC
Q 001197 530 QWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPI 569 (1125)
Q Consensus 530 ~w~~VIIDEAHriKN~~SklskaL~~l~s~~RLlLTGTPl 569 (1125)
+-.+++|||.||+.. ++.-..|-.+...-.+++-||.-
T Consensus 222 rkTilFiDEiHRFNk--sQQD~fLP~VE~G~I~lIGATTE 259 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNK--SQQDTFLPHVENGDITLIGATTE 259 (554)
T ss_pred ceeEEEeHHhhhhhh--hhhhcccceeccCceEEEecccC
Confidence 345788999999832 22222333344555666666653
No 500
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=37.71 E-value=11 Score=33.69 Aligned_cols=18 Identities=44% Similarity=0.523 Sum_probs=14.8
Q ss_pred CCCccccccccccCCCCC
Q 001197 969 SITGKRKRKEVVYADTLS 986 (1125)
Q Consensus 969 ~~~~~r~r~~~~~~~~~~ 986 (1125)
.|.|||.||.|+|.++.+
T Consensus 46 LGKGKR~RKqV~y~~~~~ 63 (66)
T PF06465_consen 46 LGKGKRSRKQVNYAEEDD 63 (66)
T ss_pred hccccccccccccccccc
Confidence 358999999999997643
Done!