Query 001198
Match_columns 1125
No_of_seqs 186 out of 323
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 16:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vda_B Maltoporin; sugar trans 15.5 24 0.00083 26.6 -0.7 9 745-753 5-13 (28)
2 1ew4_A CYAY protein; friedreic 11.3 24 0.00083 33.1 -2.2 21 4-24 47-67 (106)
3 3t3l_A Frataxin, mitochondrial 10.5 27 0.00093 33.9 -2.2 20 4-23 60-79 (129)
4 3oeq_A Frataxin homolog, mitoc 8.8 37 0.0012 33.0 -2.0 19 4-22 66-84 (123)
5 4h62_V Mediator of RNA polymer 6.3 1.7E+02 0.0059 22.4 1.0 23 61-83 4-26 (31)
6 2cci_F Cell division control p 4.9 1.6E+02 0.0054 22.9 0.1 24 702-725 7-30 (30)
7 2vqe_C 30S ribosomal protein S 3.8 2.9E+02 0.01 29.3 1.1 70 641-714 165-234 (239)
8 4g3b_A Alpha4F3D; alpha helix, 2.5 4.2E+02 0.014 19.8 0.4 19 733-751 5-24 (26)
9 4h4g_A (3R)-hydroxymyristoyl-[ 2.2 4E+02 0.014 25.8 -0.0 30 734-764 1-34 (160)
10 3ukx_C Bimax2 peptide; arm rep 2.0 4.6E+02 0.016 19.8 0.0 11 715-725 6-16 (28)
No 1
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=15.47 E-value=24 Score=26.59 Aligned_cols=9 Identities=44% Similarity=0.589 Sum_probs=7.3
Q ss_pred HHhhhcCCC
Q 001198 745 RRIRKKAPC 753 (1125)
Q Consensus 745 rrkRKKaPc 753 (1125)
+|||||+|-
T Consensus 5 lrkrrklpl 13 (28)
T 2vda_B 5 LRKRRKLPL 13 (28)
T ss_dssp CCCCCCCTH
T ss_pred eeccccCch
Confidence 588999984
No 2
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=11.33 E-value=24 Score=33.05 Aligned_cols=21 Identities=29% Similarity=0.732 Sum_probs=18.2
Q ss_pred chhhhhccCChhhHHHHhhcc
Q 001198 4 SQFILAKKGPLGTIWIAAHLE 24 (1125)
Q Consensus 4 S~~LLSKKGPLAtIWLAATL~ 24 (1125)
++.|+.|..|+.+|||||-.+
T Consensus 47 ~~~VINkQ~P~~QIWlaSp~s 67 (106)
T 1ew4_A 47 SKIIINRQEPLHQVWLATKQG 67 (106)
T ss_dssp CEEEEEEETTTTEEEEECSSC
T ss_pred CEEEEeCCchhhhheEecCCC
Confidence 457888999999999999875
No 3
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=10.53 E-value=27 Score=33.91 Aligned_cols=20 Identities=20% Similarity=0.647 Sum_probs=17.6
Q ss_pred chhhhhccCChhhHHHHhhc
Q 001198 4 SQFILAKKGPLGTIWIAAHL 23 (1125)
Q Consensus 4 S~~LLSKKGPLAtIWLAATL 23 (1125)
++.|+.|..|+.+|||||-.
T Consensus 60 g~~VINkQ~P~~QIWLASp~ 79 (129)
T 3t3l_A 60 GTYVINKQTPNKAIWLSSPS 79 (129)
T ss_dssp CEEEEEEETTTTEEEEECSS
T ss_pred CEEEEeCCchhhHhheeCCC
Confidence 56788999999999999984
No 4
>3oeq_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transpo protein; 2.96A {Saccharomyces cerevisiae} SCOP: d.82.2.1 PDB: 2fql_A 3oer_A 2ga5_A
Probab=8.76 E-value=37 Score=33.00 Aligned_cols=19 Identities=26% Similarity=0.721 Sum_probs=16.8
Q ss_pred chhhhhccCChhhHHHHhh
Q 001198 4 SQFILAKKGPLGTIWIAAH 22 (1125)
Q Consensus 4 S~~LLSKKGPLAtIWLAAT 22 (1125)
++.|+.|..|+.+|||||-
T Consensus 66 ~~~VINkQ~P~~QIWlaSp 84 (123)
T 3oeq_A 66 GTYVINKQPPNKQIWLASP 84 (123)
T ss_dssp CCEEEECCCSSSCCEEEET
T ss_pred CEEEEeCCChhhHHheecC
Confidence 5678889999999999996
No 5
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=6.25 E-value=1.7e+02 Score=22.44 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=15.3
Q ss_pred cceEEEEeccchhHHHhHHHHHH
Q 001198 61 LGVVRIYSRKVNYLFDDCSEALL 83 (1125)
Q Consensus 61 lGVVRIYSRKvkYLL~DCneaL~ 83 (1125)
.||+|.-.||++-|++.|-+.+.
T Consensus 4 sgvtrfdekqieelldncietfv 26 (31)
T 4h62_V 4 SGVTRFDEKQIEELLDNCIETFV 26 (31)
T ss_dssp ------CHHHHHHHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHHHHHHH
Confidence 48999999999999999988765
No 6
>2cci_F Cell division control protein 6 homolog; complex (transferase/cell division), protein kinases, cell C recruitment, substrate recognition; HET: TPO ATP; 2.7A {Homo sapiens}
Probab=4.91 E-value=1.6e+02 Score=22.93 Aligned_cols=24 Identities=13% Similarity=0.273 Sum_probs=16.8
Q ss_pred hhhhhhhhchhhhhhhhhcccccc
Q 001198 702 VASRKRARSASQTNALKRKVLMDD 725 (1125)
Q Consensus 702 v~~~kr~R~~~~~~~~KRKvl~Dd 725 (1125)
.|+.|-+-.|--...++|+..||+
T Consensus 7 Kq~kkengpp~~~t~kgrrLvFd~ 30 (30)
T 2cci_F 7 KQGKKENGPPHSHTLKGRRLVFDN 30 (30)
T ss_pred ccccccCCCCcccccccceeeccC
Confidence 566666665555577789999985
No 7
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=3.83 E-value=2.9e+02 Score=29.31 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=30.4
Q ss_pred cccccccccccccccccccccccccccccCCCCCcchhhhhhhcCccCccceeccCCChhhhhhhhhhhchhhh
Q 001198 641 KRSYTESTITVESLNSSESFGVDRTKRNSEFIPDDDDLLSSILVGRKSSVLKMKPTPPVREVASRKRARSASQT 714 (1125)
Q Consensus 641 KRs~testlt~qS~~s~es~g~~~s~rT~d~ipDd~dllsSILvg~~sp~l~i~PTPp~pev~~~kr~R~~~~~ 714 (1125)
.-.|.|-.+-+|++...=-|+..+..+|+--|-=-.= |.-|...|.=+.+|.|+.|.....-|.|+|..+
T Consensus 165 tE~~~eG~vpL~Tlra~IDYa~~~a~T~yGviGVKVW----I~~ge~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (239)
T 2vqe_C 165 TEWAAQGRVPLHTLRANIDYGFALARTTYGVLGVKAY----IFLGEVIGGQKPKARPELPKAEERPRRRRPAVR 234 (239)
T ss_dssp CBCCEEECCCTTCGGGCEEEEEECCBCSSCBCCEEEE----EECCCC---------------------------
T ss_pred hhhhhcCccccCCccceeEEEEEEEEcCCeeEEEEEE----EEcCCcCCCcCCCCCCCCccccccccccCccee
Confidence 4458899999999998888999999988876532211 223444588889999999888766566655443
No 8
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=2.54 E-value=4.2e+02 Score=19.78 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=11.8
Q ss_pred HHHHhhcCch-HHHHhhhcC
Q 001198 733 VIRQQLTNTE-DIRRIRKKA 751 (1125)
Q Consensus 733 ~iRqQL~~tE-dirrkRKKa 751 (1125)
-.-+.|++.. .||..|||+
T Consensus 5 e~ykeled~qerlrk~rkkl 24 (26)
T 4g3b_A 5 EXYKELEDXQERLRKXRKKL 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 3345566555 777778775
No 9
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=2.20 E-value=4e+02 Score=25.82 Aligned_cols=30 Identities=30% Similarity=0.465 Sum_probs=16.4
Q ss_pred HHHhhcCch----HHHHhhhcCCCCchhhhhhhhh
Q 001198 734 IRQQLTNTE----DIRRIRKKAPCTGPEILMIQMQ 764 (1125)
Q Consensus 734 iRqQL~~tE----dirrkRKKaPcT~~eIw~i~R~ 764 (1125)
||+.+-+++ ||..+++-+|| |.+..++.|.
T Consensus 1 ~~~~~m~~~~~~~di~~I~~~lPh-R~PfLlvDrv 34 (160)
T 4h4g_A 1 MRRTIMSTEKINFDIHKILTLLPH-RYPILLVDRV 34 (160)
T ss_dssp ------------CCHHHHHHHCCC-CTTSCCCCEE
T ss_pred CcceeccccccccCHHHHHHHCCC-CCCeEEEEEE
Confidence 455555555 78899999999 5666666664
No 10
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=2.02 E-value=4.6e+02 Score=19.82 Aligned_cols=11 Identities=45% Similarity=0.371 Sum_probs=6.9
Q ss_pred hhhhhcccccc
Q 001198 715 NALKRKVLMDD 725 (1125)
Q Consensus 715 ~~~KRKvl~Dd 725 (1125)
+++|||-..||
T Consensus 6 rrrkrkrewdd 16 (28)
T 3ukx_C 6 RRRKRKREWDD 16 (28)
T ss_dssp CCCCCCCCCCC
T ss_pred HHHHhhccccc
Confidence 55666666665
Done!