Query 001198
Match_columns 1125
No_of_seqs 186 out of 323
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 16:01:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001198.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001198hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ew4a_ d.82.2.1 (A:) CyaY {Es 11.1 11 0.00082 33.0 -2.3 21 4-24 47-67 (106)
2 d1ekga_ d.82.2.1 (A:) C-termin 10.8 10 0.00074 34.0 -2.8 21 4-24 52-72 (119)
3 d2fqla1 d.82.2.1 (A:61-172) C- 9.7 14 0.001 32.7 -2.2 21 4-24 57-77 (112)
4 d2essa2 d.38.1.8 (A:150-247) A 8.3 64 0.0046 26.2 1.5 29 851-879 5-33 (98)
5 d2cy3a_ a.138.1.1 (A:) Cytochr 4.1 2.2E+02 0.016 24.1 2.6 31 591-621 1-31 (118)
6 d2vxfa1 b.38.1.5 (A:6-85) LSM1 3.3 2.2E+02 0.016 24.1 1.7 51 644-698 26-77 (80)
7 d1j0aa_ c.79.1.1 (A:) 1-aminoc 2.9 2.8E+02 0.021 25.4 2.3 52 751-802 256-309 (325)
8 d2tpta1 a.46.2.1 (A:1-70) Thym 2.5 1.7E+02 0.012 22.8 0.1 34 1-49 1-34 (70)
9 d2owna2 d.38.1.8 (A:150-258) P 2.2 2.5E+02 0.019 22.5 0.9 19 860-878 17-35 (109)
10 d2alia1 d.38.1.1 (A:5-134) Hyp 2.1 2.7E+02 0.02 22.9 0.9 19 861-879 10-28 (130)
No 1
>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
Probab=11.13 E-value=11 Score=33.04 Aligned_cols=21 Identities=29% Similarity=0.732 Sum_probs=18.0
Q ss_pred chhhhhccCChhhHHHHhhcc
Q 001198 4 SQFILAKKGPLGTIWIAAHLE 24 (1125)
Q Consensus 4 S~~LLSKKGPLAtIWLAATL~ 24 (1125)
++.|++|..|..+||||+-.+
T Consensus 47 ~~~VINkQ~p~~QIWlaSpsg 67 (106)
T d1ew4a_ 47 SKIIINRQEPLHQVWLATKQG 67 (106)
T ss_dssp CEEEEEEETTTTEEEEECSSC
T ss_pred CEEEEeCCCccceeeEECCCC
Confidence 457889999999999999865
No 2
>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.81 E-value=10 Score=34.01 Aligned_cols=21 Identities=19% Similarity=0.610 Sum_probs=18.0
Q ss_pred chhhhhccCChhhHHHHhhcc
Q 001198 4 SQFILAKKGPLGTIWIAAHLE 24 (1125)
Q Consensus 4 S~~LLSKKGPLAtIWLAATL~ 24 (1125)
++.|++|..|..+||||+-.+
T Consensus 52 ~~~VINkQ~p~~QIWlASp~s 72 (119)
T d1ekga_ 52 GTYVINKQTPNKQIWLSSPSS 72 (119)
T ss_dssp CEEEEEEEGGGTEEEEEETTT
T ss_pred cEEEEeCCCCceeEEEEcCCC
Confidence 467889999999999999764
No 3
>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.70 E-value=14 Score=32.75 Aligned_cols=21 Identities=29% Similarity=0.719 Sum_probs=17.7
Q ss_pred chhhhhccCChhhHHHHhhcc
Q 001198 4 SQFILAKKGPLGTIWIAAHLE 24 (1125)
Q Consensus 4 S~~LLSKKGPLAtIWLAATL~ 24 (1125)
++.|++|..|..+||||+-..
T Consensus 57 ~~~VINkQ~p~~QIWlaSp~s 77 (112)
T d2fqla1 57 GTYVINKQPPNKQIWLASPLS 77 (112)
T ss_dssp EEEEEEECCSSSSEEEEETTT
T ss_pred CEEEEeCCCchhheeEecCCC
Confidence 457889999999999999753
No 4
>d2essa2 d.38.1.8 (A:150-247) Acyl-ACP thioesterase {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=8.25 E-value=64 Score=26.22 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=22.2
Q ss_pred ccccccccccccccccCccCccccccccc
Q 001198 851 TESHQGIDHQFGAQNTDAQGHINSDTDVV 879 (1125)
Q Consensus 851 ~e~~~~~~~~~~~~~~d~~~~~~~~~~~~ 879 (1125)
++++.+....+.-.|+|..||+|-..=+.
T Consensus 5 ~~~~~v~~~~vR~~D~D~~gHVNN~~Y~~ 33 (98)
T d2essa2 5 TSNQPVATLTAKYSDIDINGHVNSIRYIE 33 (98)
T ss_dssp CCCSCSEEEECCGGGBCTTSBBCHHHHHH
T ss_pred CCCceEEEEEECHHHcCccceEchHHHHH
Confidence 35566777788999999999999765443
No 5
>d2cy3a_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio desulfuricans, different strains [TaxId: 876]}
Probab=4.12 E-value=2.2e+02 Score=24.07 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=24.7
Q ss_pred CCCCCcccccccCccccCCCCcccccccCcc
Q 001198 591 SDLPAPEKLLSVPEGLLNKPNDLIVESTPEK 621 (1125)
Q Consensus 591 se~p~pEklLs~p~~~~~~~~dll~e~Tp~k 621 (1125)
+|-|..+++|.+|++..-++.-+-+..++..
T Consensus 1 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 31 (118)
T d2cy3a_ 1 ADAPGDDYVISAPEGMKAKPKGDKPGALQKT 31 (118)
T ss_dssp CCCCCTTCEECCCTTCCCCCBTTBCCCCCCB
T ss_pred CCCcccceeecCCCccccCccccccCCCcCC
Confidence 5779999999999998877777777666553
No 6
>d2vxfa1 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio) [TaxId: 7955]}
Probab=3.27 E-value=2.2e+02 Score=24.08 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=34.5
Q ss_pred ccccccccccccccccccccccccccCCCCCcchhhhhhhc-CccCccceeccCCC
Q 001198 644 YTESTITVESLNSSESFGVDRTKRNSEFIPDDDDLLSSILV-GRKSSVLKMKPTPP 698 (1125)
Q Consensus 644 ~testlt~qS~~s~es~g~~~s~rT~d~ipDd~dllsSILv-g~~sp~l~i~PTPp 698 (1125)
..|||++|+- |.+||---. ++...||--+.....|+| |.--=+|.+.-.|+
T Consensus 26 ~~~sTi~L~n---VrsfGTEgR-~~~~~ipp~~~vy~~IvFrgsDIKdL~v~e~p~ 77 (80)
T d2vxfa1 26 TENSTVALAK---VRSFGTEDR-PTDRPIAPRDETFEYIIFRGSDIKDLTVCEPPK 77 (80)
T ss_dssp TTTTEEEEEE---EEECCSTTS-CCSSCCCCCCCCEEEEEEETTTEEEEEESSCCC
T ss_pred cccCEEEeee---eeEeecCCC-CCCCccCCCCcceeEEEEcCcCcceEEeccCCC
Confidence 4588888775 888996554 444668888888888776 33344566655444
No 7
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.94 E-value=2.8e+02 Score=25.36 Aligned_cols=52 Identities=19% Similarity=0.108 Sum_probs=31.3
Q ss_pred CCCCchhhhh-hhhhcccccccccccccc-chhhhhhhhhccccccceeeccCC
Q 001198 751 APCTGPEILM-IQMQFLEDDIFNEPIFTG-MSAELTSVHCEIHDLSKISISETD 802 (1125)
Q Consensus 751 aPcT~~eIw~-i~R~~led~if~EPl~tG-ms~dL~~l~~rtf~ls~i~v~~n~ 802 (1125)
...+.-|+|. +.+..+..+||.||+-+| +-.-|.++-.+.+.=++|-+++.+
T Consensus 256 ~~v~d~e~~~a~~~l~~~eGI~~eP~~s~~a~~~l~~~~~~~~~~~~vv~i~tG 309 (325)
T d1j0aa_ 256 YGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDLARKGELGEKILFIHTG 309 (325)
T ss_dssp TTCCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCSEEEEEECC
T ss_pred eeechHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHHHHHcCCCCCeEEEEECC
Confidence 4444556665 445556779999998776 333455555554444556666554
No 8
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=2.53 E-value=1.7e+02 Score=22.85 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=19.3
Q ss_pred CCcchhhhhccCChhhHHHHhhccCCCcchhhcccchHHHHHHhcCCCC
Q 001198 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDV 49 (1125)
Q Consensus 1 MFYS~~LLSKKGPLAtIWLAATL~KKLSKKqIl~tDI~kSCeeIl~Pev 49 (1125)
||-.++|+.| |.+++.+..-.+...++.|++...
T Consensus 1 m~~~qeiI~k---------------~~~g~~Ls~~E~~~~~~~i~~g~~ 34 (70)
T d2tpta1 1 LFLAQEIIRK---------------KRDGHALSDEEIRFFINGIRDNTI 34 (70)
T ss_dssp CCCHHHHHHH---------------HHTTCCCCHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHH---------------HHCCCCcCHHHHHHHHHHHHcCCc
Confidence 6777777765 223333333346667777776544
No 9
>d2owna2 d.38.1.8 (A:150-258) Putative oleoyl-ACP thioesterase LP0708 {Lactobacillus plantarum [TaxId: 1590]}
Probab=2.25 E-value=2.5e+02 Score=22.51 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=14.4
Q ss_pred cccccccCccCcccccccc
Q 001198 860 QFGAQNTDAQGHINSDTDV 878 (1125)
Q Consensus 860 ~~~~~~~d~~~~~~~~~~~ 878 (1125)
.+--+|.|..||||-..=+
T Consensus 17 ~Vr~~D~D~~gHVnN~~Y~ 35 (109)
T d2owna2 17 HVRFFDIDPNRHVNNAHYF 35 (109)
T ss_dssp ECCGGGBCTTSSBCGGGHH
T ss_pred EecHHHcCCCCcccCchhH
Confidence 4567899999999865443
No 10
>d2alia1 d.38.1.1 (A:5-134) Hypothetical protein PA2801 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.13 E-value=2.7e+02 Score=22.92 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=14.0
Q ss_pred ccccccCccCccccccccc
Q 001198 861 FGAQNTDAQGHINSDTDVV 879 (1125)
Q Consensus 861 ~~~~~~d~~~~~~~~~~~~ 879 (1125)
+--+|.|+.|||+-..=+.
T Consensus 10 vr~~D~D~~Ghv~n~~y~~ 28 (130)
T d2alia1 10 VRWGDMDSYGHVNNTLYFQ 28 (130)
T ss_dssp CCGGGBCTTSSBCTTHHHH
T ss_pred cCHHHcCccCccchHHHHH
Confidence 3457999999998765443
Done!