Query 001200
Match_columns 1125
No_of_seqs 750 out of 6148
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 18:32:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.9E-33 6.4E-38 362.1 30.6 512 86-755 69-588 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.8E-32 4E-37 354.7 30.4 517 107-784 68-588 (968)
3 PLN03210 Resistant to P. syrin 100.0 5.7E-28 1.2E-32 311.4 29.1 417 30-600 472-910 (1153)
4 KOG4658 Apoptotic ATPase [Sign 99.9 3.9E-28 8.5E-33 294.8 13.5 234 2-271 432-678 (889)
5 KOG4194 Membrane glycoprotein 99.9 5.7E-25 1.2E-29 237.4 9.4 298 84-450 50-357 (873)
6 KOG0618 Serine/threonine phosp 99.9 3.2E-25 6.9E-30 252.7 -3.0 460 90-656 2-466 (1081)
7 KOG4194 Membrane glycoprotein 99.9 8.3E-24 1.8E-28 228.5 7.4 324 85-450 101-432 (873)
8 KOG0472 Leucine-rich repeat pr 99.9 4.8E-25 1.1E-29 228.0 -13.9 256 87-362 46-308 (565)
9 PLN03210 Resistant to P. syrin 99.9 4.5E-20 9.7E-25 238.5 27.6 190 83-291 555-755 (1153)
10 KOG0472 Leucine-rich repeat pr 99.8 7.1E-25 1.5E-29 226.7 -15.3 476 107-652 44-539 (565)
11 KOG0444 Cytoskeletal regulator 99.8 4.2E-23 9.1E-28 223.9 -5.4 368 107-632 6-379 (1255)
12 KOG0618 Serine/threonine phosp 99.8 1.5E-22 3.2E-27 231.2 -4.0 480 113-779 3-488 (1081)
13 KOG0444 Cytoskeletal regulator 99.8 3.8E-22 8.3E-27 216.6 -5.6 334 71-450 39-379 (1255)
14 KOG0617 Ras suppressor protein 99.7 2.4E-18 5.3E-23 157.9 -5.0 166 99-280 24-192 (264)
15 KOG0617 Ras suppressor protein 99.6 1.3E-17 2.7E-22 153.2 -4.9 152 84-239 31-186 (264)
16 KOG4237 Extracellular matrix p 99.6 3.1E-17 6.7E-22 170.6 -4.1 143 92-237 52-199 (498)
17 KOG1603 Copper chaperone [Inor 99.5 1.1E-13 2.4E-18 114.7 9.0 68 1027-1094 2-70 (73)
18 PRK15387 E3 ubiquitin-protein 99.5 4.7E-13 1E-17 160.1 16.8 158 87-278 202-359 (788)
19 PRK15387 E3 ubiquitin-protein 99.5 9E-13 2E-17 157.7 17.7 251 68-390 205-455 (788)
20 KOG4237 Extracellular matrix p 99.4 9.5E-15 2.1E-19 152.3 -1.9 142 69-212 51-199 (498)
21 PRK15370 E3 ubiquitin-protein 99.4 2E-12 4.3E-17 156.1 14.1 175 87-291 179-354 (754)
22 PRK15370 E3 ubiquitin-protein 99.4 1.1E-12 2.4E-17 158.2 11.6 117 109-239 179-296 (754)
23 KOG4658 Apoptotic ATPase [Sign 99.3 2.2E-12 4.8E-17 158.1 6.5 128 131-272 521-653 (889)
24 KOG4341 F-box protein containi 99.1 7.4E-13 1.6E-17 139.8 -7.1 265 556-851 189-458 (483)
25 KOG4341 F-box protein containi 99.1 6.5E-13 1.4E-17 140.2 -8.3 299 557-917 138-441 (483)
26 KOG0532 Leucine-rich repeat (L 99.1 3.8E-12 8.1E-17 139.3 -4.6 192 71-280 57-253 (722)
27 PF14580 LRR_9: Leucine-rich r 99.1 9.7E-11 2.1E-15 114.9 4.4 131 130-270 16-149 (175)
28 KOG0532 Leucine-rich repeat (L 99.1 7.8E-12 1.7E-16 136.8 -4.0 187 90-294 54-245 (722)
29 cd00116 LRR_RI Leucine-rich re 99.0 2.3E-10 5E-15 128.9 5.0 181 85-274 22-234 (319)
30 cd00116 LRR_RI Leucine-rich re 99.0 1.5E-10 3.3E-15 130.4 3.3 174 91-274 3-206 (319)
31 KOG1259 Nischarin, modulator o 99.0 6.1E-11 1.3E-15 119.4 -0.4 183 84-279 212-417 (490)
32 PF00403 HMA: Heavy-metal-asso 99.0 1.8E-09 4E-14 87.3 8.1 57 1033-1089 1-61 (62)
33 PF14580 LRR_9: Leucine-rich r 99.0 4.4E-10 9.6E-15 110.3 4.5 119 87-208 20-147 (175)
34 KOG1259 Nischarin, modulator o 98.9 1.4E-10 3E-15 116.9 -2.0 127 108-239 284-412 (490)
35 COG4886 Leucine-rich repeat (L 98.8 4.5E-09 9.9E-14 121.8 5.0 186 91-292 98-286 (394)
36 COG4886 Leucine-rich repeat (L 98.7 1.4E-08 3.1E-13 117.6 5.6 103 132-236 115-219 (394)
37 COG2608 CopZ Copper chaperone 98.6 9.7E-08 2.1E-12 78.6 7.4 65 1029-1093 1-69 (71)
38 KOG3207 Beta-tubulin folding c 98.6 5.8E-09 1.2E-13 111.5 0.2 201 84-290 119-333 (505)
39 KOG3207 Beta-tubulin folding c 98.6 7.6E-09 1.6E-13 110.6 -0.7 180 83-273 143-338 (505)
40 PF13855 LRR_8: Leucine rich r 98.4 2.1E-07 4.5E-12 75.0 3.9 59 108-167 1-60 (61)
41 KOG4656 Copper chaperone for s 98.4 1.3E-06 2.9E-11 82.9 8.3 69 1029-1097 6-74 (247)
42 KOG1859 Leucine-rich repeat pr 98.3 5.2E-09 1.1E-13 118.0 -10.0 174 85-274 108-292 (1096)
43 KOG0531 Protein phosphatase 1, 98.3 5.4E-08 1.2E-12 112.7 -2.6 172 86-276 72-247 (414)
44 PF13855 LRR_8: Leucine rich r 98.3 4.3E-07 9.4E-12 73.1 3.2 58 179-237 2-60 (61)
45 KOG0531 Protein phosphatase 1, 98.2 7.6E-08 1.6E-12 111.5 -3.4 129 106-239 70-199 (414)
46 PLN03150 hypothetical protein; 98.2 3E-06 6.6E-11 102.8 9.4 105 134-239 419-528 (623)
47 KOG1909 Ran GTPase-activating 98.1 2.9E-07 6.2E-12 96.2 -1.8 180 86-274 92-311 (382)
48 PLN03150 hypothetical protein; 98.1 4.4E-06 9.6E-11 101.4 8.1 104 157-272 419-526 (623)
49 PRK15386 type III secretion pr 98.1 9.1E-06 2E-10 89.8 8.8 136 640-829 51-187 (426)
50 PRK15386 type III secretion pr 98.0 1.5E-05 3.2E-10 88.2 9.2 138 734-913 48-188 (426)
51 KOG2120 SCF ubiquitin ligase, 98.0 3.6E-07 7.9E-12 92.9 -3.7 186 688-913 185-374 (419)
52 KOG2120 SCF ubiquitin ligase, 98.0 2.6E-07 5.6E-12 93.9 -4.8 63 405-479 311-373 (419)
53 KOG3665 ZYG-1-like serine/thre 97.9 3.1E-06 6.6E-11 102.0 1.8 113 127-239 142-263 (699)
54 PF12799 LRR_4: Leucine Rich r 97.9 9.5E-06 2.1E-10 59.5 3.6 39 134-172 2-40 (44)
55 PF12799 LRR_4: Leucine Rich r 97.9 1.5E-05 3.4E-10 58.4 4.1 41 178-219 1-41 (44)
56 KOG1909 Ran GTPase-activating 97.9 2.6E-06 5.7E-11 89.2 -0.7 149 106-273 28-197 (382)
57 KOG1644 U2-associated snRNP A' 97.8 3.9E-05 8.4E-10 74.4 5.6 120 88-210 21-149 (233)
58 KOG3665 ZYG-1-like serine/thre 97.8 1.5E-05 3.2E-10 96.3 3.4 134 132-273 121-262 (699)
59 KOG1859 Leucine-rich repeat pr 97.6 8.1E-07 1.7E-11 100.8 -8.9 122 87-212 165-290 (1096)
60 KOG1947 Leucine rich repeat pr 97.6 2.5E-06 5.4E-11 102.3 -5.7 96 556-655 187-283 (482)
61 KOG1644 U2-associated snRNP A' 97.6 7.5E-05 1.6E-09 72.5 5.3 108 156-272 42-151 (233)
62 PLN02957 copper, zinc superoxi 97.5 0.00041 9E-09 72.8 10.1 72 1029-1100 5-76 (238)
63 KOG4579 Leucine-rich repeat (L 97.5 7.4E-06 1.6E-10 73.9 -3.2 109 88-220 29-141 (177)
64 KOG1947 Leucine rich repeat pr 97.5 1.2E-05 2.6E-10 96.4 -2.6 38 713-750 268-308 (482)
65 KOG4579 Leucine-rich repeat (L 97.4 1.7E-05 3.7E-10 71.7 -2.2 105 133-239 27-136 (177)
66 KOG2982 Uncharacterized conser 97.3 0.00012 2.5E-09 75.1 2.8 38 225-272 120-157 (418)
67 COG5238 RNA1 Ran GTPase-activa 97.2 0.00017 3.7E-09 72.9 2.4 85 132-217 29-135 (388)
68 PRK10671 copA copper exporting 97.2 0.00071 1.5E-08 85.7 8.2 66 1028-1095 1-67 (834)
69 KOG2123 Uncharacterized conser 96.8 5.1E-05 1.1E-09 76.9 -5.5 107 154-268 17-124 (388)
70 KOG2982 Uncharacterized conser 96.7 0.00074 1.6E-08 69.4 2.0 101 90-191 49-159 (418)
71 KOG2739 Leucine-rich acidic nu 96.6 0.00091 2E-08 68.3 1.8 83 130-212 62-154 (260)
72 KOG2739 Leucine-rich acidic nu 96.4 0.0019 4.2E-08 66.0 2.8 108 154-272 41-154 (260)
73 PF13306 LRR_5: Leucine rich r 96.2 0.012 2.6E-07 55.8 6.7 39 124-163 26-65 (129)
74 PF13306 LRR_5: Leucine rich r 96.0 0.02 4.3E-07 54.3 7.0 107 123-235 2-112 (129)
75 PF00560 LRR_1: Leucine Rich R 95.2 0.0065 1.4E-07 36.9 0.3 21 179-199 1-21 (22)
76 COG5238 RNA1 Ran GTPase-activa 95.1 0.0097 2.1E-07 60.7 1.5 108 129-239 88-227 (388)
77 KOG2123 Uncharacterized conser 95.0 0.0013 2.8E-08 67.1 -5.1 78 107-188 18-98 (388)
78 PF00560 LRR_1: Leucine Rich R 94.4 0.019 4.1E-07 34.9 0.9 21 134-154 1-21 (22)
79 COG2217 ZntA Cation transport 93.9 0.12 2.7E-06 62.6 7.5 63 1030-1093 2-69 (713)
80 TIGR00003 copper ion binding p 93.8 0.39 8.5E-06 38.0 8.3 60 1030-1089 2-65 (68)
81 KOG3864 Uncharacterized conser 93.0 0.012 2.6E-07 57.7 -2.4 43 556-598 124-166 (221)
82 KOG3864 Uncharacterized conser 92.5 0.025 5.4E-07 55.6 -1.1 69 376-446 121-189 (221)
83 PF13504 LRR_7: Leucine rich r 92.2 0.088 1.9E-06 29.6 1.3 16 179-194 2-17 (17)
84 KOG0473 Leucine-rich repeat pr 91.8 0.0044 9.5E-08 61.6 -7.1 84 152-237 38-122 (326)
85 PF13504 LRR_7: Leucine rich r 91.1 0.13 2.9E-06 28.9 1.3 16 134-149 2-17 (17)
86 PF02680 DUF211: Uncharacteriz 90.4 1.7 3.8E-05 37.1 7.8 61 1029-1089 4-72 (95)
87 KOG0473 Leucine-rich repeat pr 89.0 0.012 2.7E-07 58.5 -6.7 81 132-212 41-122 (326)
88 PRK10671 copA copper exporting 87.3 1.1 2.4E-05 57.1 7.1 62 1031-1092 100-162 (834)
89 KOG0207 Cation transport ATPas 86.9 1.7 3.6E-05 52.9 7.6 67 1030-1096 146-216 (951)
90 smart00369 LRR_TYP Leucine-ric 86.5 0.65 1.4E-05 29.5 2.3 18 178-195 2-19 (26)
91 smart00370 LRR Leucine-rich re 86.5 0.65 1.4E-05 29.5 2.3 18 178-195 2-19 (26)
92 smart00369 LRR_TYP Leucine-ric 86.2 0.58 1.3E-05 29.7 1.9 23 200-223 1-23 (26)
93 smart00370 LRR Leucine-rich re 86.2 0.58 1.3E-05 29.7 1.9 23 200-223 1-23 (26)
94 PRK11033 zntA zinc/cadmium/mer 81.7 6.6 0.00014 49.2 10.2 63 1029-1091 52-116 (741)
95 KOG4308 LRR-containing protein 73.3 0.049 1.1E-06 63.4 -11.0 177 88-273 89-302 (478)
96 KOG0207 Cation transport ATPas 73.3 5.1 0.00011 48.9 5.4 60 1037-1096 2-63 (951)
97 smart00367 LRR_CC Leucine-rich 70.0 2.6 5.6E-05 26.7 1.2 17 901-917 1-17 (26)
98 smart00367 LRR_CC Leucine-rich 69.7 2.9 6.2E-05 26.5 1.3 17 819-835 2-18 (26)
99 COG1888 Uncharacterized protei 69.5 20 0.00044 30.3 6.4 61 1030-1090 6-75 (97)
100 TIGR02052 MerP mercuric transp 66.3 35 0.00075 29.1 8.2 59 1031-1089 24-86 (92)
101 smart00364 LRR_BAC Leucine-ric 58.6 6.6 0.00014 24.9 1.3 17 179-195 3-19 (26)
102 smart00365 LRR_SD22 Leucine-ri 58.3 7.9 0.00017 24.6 1.7 15 178-192 2-16 (26)
103 KOG4308 LRR-containing protein 53.4 0.38 8.2E-06 56.1 -8.7 128 110-238 89-245 (478)
104 PRK10553 assembly protein for 45.7 73 0.0016 27.4 6.1 43 1044-1086 19-62 (87)
105 PF01883 DUF59: Domain of unkn 42.4 33 0.00071 28.2 3.6 33 1030-1062 34-72 (72)
106 PF13516 LRR_6: Leucine Rich r 40.0 16 0.00035 22.4 1.0 13 178-190 2-14 (24)
107 PF13732 DUF4162: Domain of un 38.2 84 0.0018 26.6 5.6 39 1051-1089 26-65 (84)
108 COG4004 Uncharacterized protei 37.1 44 0.00096 28.4 3.4 38 1049-1086 34-76 (96)
109 smart00368 LRR_RI Leucine rich 35.5 30 0.00065 22.4 1.8 12 157-168 3-14 (28)
110 PF05663 DUF809: Protein of un 35.1 34 0.00074 28.9 2.5 39 1047-1085 52-90 (138)
111 PF03927 NapD: NapD protein; 34.3 1.7E+02 0.0036 24.7 6.6 45 1044-1089 17-62 (79)
112 cd00371 HMA Heavy-metal-associ 31.3 1.8E+02 0.0039 20.1 6.6 49 1037-1085 6-56 (63)
113 PF13291 ACT_4: ACT domain; PD 30.3 1.1E+02 0.0024 25.6 5.1 32 1030-1061 48-79 (80)
114 cd04888 ACT_PheB-BS C-terminal 29.4 1.1E+02 0.0023 25.2 4.8 33 1030-1062 41-74 (76)
115 PF03927 NapD: NapD protein; 27.6 1.6E+02 0.0034 24.9 5.3 33 1030-1062 39-71 (79)
116 PF04972 BON: BON domain; Int 27.2 51 0.0011 26.2 2.3 39 1045-1084 2-43 (64)
117 COG3643 Glutamate formiminotra 22.9 1.4E+02 0.0031 30.6 4.8 40 1044-1085 20-63 (302)
118 PF14437 MafB19-deam: MafB19-l 22.5 1.4E+02 0.003 28.4 4.4 42 1029-1071 99-142 (146)
119 PRK13748 putative mercuric red 21.8 2.4E+02 0.0053 34.2 7.9 59 1034-1092 4-65 (561)
120 KOG3411 40S ribosomal protein 21.2 66 0.0014 29.4 1.9 43 1042-1087 98-141 (143)
121 PF14492 EFG_II: Elongation Fa 21.1 4.3E+02 0.0093 21.9 6.8 44 1046-1089 23-68 (75)
122 cd02410 archeal_CPSF_KH The ar 20.6 4.9E+02 0.011 24.9 7.5 71 1028-1098 35-116 (145)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-33 Score=362.15 Aligned_cols=512 Identities=18% Similarity=0.169 Sum_probs=303.9
Q ss_pred CCCCEEEeecCCCccc-CCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcc-ccCcccCCCCCCcEEE
Q 001200 86 KNCPTIFLHDCKHWEV-PEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPSLFHLPLNLQTLC 162 (1125)
Q Consensus 86 ~~l~~L~l~~n~~~~l-~~~~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~-~lp~~l~~l~~Lr~L~ 162 (1125)
.+++.|++++|.+... +..+ .+++|++|++++|.+...+|..+|.++++||+|++++|.+. .+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 4788999999887643 3333 78999999999999887899888889999999999999887 3453 5688999999
Q ss_pred ccCCCCCC-c-ccccCCCCCcEEEccCCCCC-CCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccc
Q 001200 163 LDRCALGD-I-AIIGNLKKLEILSLVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 163 L~~~~l~~-l-~~~~~L~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
|++|.+.. + ..++++.+|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC
Confidence 99998763 3 67899999999999999876 77888999999999999999844567776 899999999999988876
Q ss_pred cccccccccCCCCChhhhCCCCCCCEEEeecCCCc-ccCCccccccccEEEEEeCCcccccCCCCCceEEEEecccCChh
Q 001200 240 WEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM-ILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVD 318 (1125)
Q Consensus 240 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~ 318 (1125)
...+..++++++|++|++++|.+. .+|..
T Consensus 226 -----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--------------------------------------- 255 (968)
T PLN00113 226 -----------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSS--------------------------------------- 255 (968)
T ss_pred -----------CcCChhHhcCCCCCEEECcCceeccccChh---------------------------------------
Confidence 345677889999999999888753 22222
Q ss_pred HHHhhhccccEEEccccCCcccccccccccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccccccceecc
Q 001200 319 EVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICL 398 (1125)
Q Consensus 319 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 398 (1125)
+..+++|+.|+++++.........+ ..+++|++|++++|.....++ ..+..+++|+.|++.++.-....
T Consensus 256 --l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p-----~~~~~l~~L~~L~l~~n~~~~~~-- 324 (968)
T PLN00113 256 --LGNLKNLQYLFLYQNKLSGPIPPSI--FSLQKLISLDLSDNSLSGEIP-----ELVIQLQNLEILHLFSNNFTGKI-- 324 (968)
T ss_pred --HhCCCCCCEEECcCCeeeccCchhH--hhccCcCEEECcCCeeccCCC-----hhHcCCCCCcEEECCCCccCCcC--
Confidence 2334455555555443222222222 445566666666554221111 11233445555555442211111
Q ss_pred CccCcccccCccEEEeccCCCcCcccchhhhccCCcccEEecccccccchhhcccccCCccCCcccceecCccCEEeecC
Q 001200 399 GQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKF 478 (1125)
Q Consensus 399 ~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 478 (1125)
+.....+++|+.|++++|.-...+| ..++.+++|+.|+++++.-...++. ....+++|+.|++.+
T Consensus 325 -~~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~~~~L~~L~Ls~n~l~~~~p~------------~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 325 -PVALTSLPRLQVLQLWSNKFSGEIP--KNLGKHNNLTVLDLSTNNLTGEIPE------------GLCSSGNLFKLILFS 389 (968)
T ss_pred -ChhHhcCCCCCEEECcCCCCcCcCC--hHHhCCCCCcEEECCCCeeEeeCCh------------hHhCcCCCCEEECcC
Confidence 0112245566666666543222222 2245556666666665432222210 112234455555544
Q ss_pred CCcccccccccccccccccccceecccCCCceeecccccCcccccccccccccccceeeccccccccccccCcccccCCC
Q 001200 479 LPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQN 558 (1125)
Q Consensus 479 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~ 558 (1125)
++-...++. .+. .+++|+.|++++|.+....+..+. .+++
T Consensus 390 n~l~~~~p~----~~~----------------------------------~~~~L~~L~L~~n~l~~~~p~~~~--~l~~ 429 (968)
T PLN00113 390 NSLEGEIPK----SLG----------------------------------ACRSLRRVRLQDNSFSGELPSEFT--KLPL 429 (968)
T ss_pred CEecccCCH----HHh----------------------------------CCCCCCEEECcCCEeeeECChhHh--cCCC
Confidence 322211111 122 344555555555554433332232 2556
Q ss_pred CcEEEEecCCCccccCCchhhhhccCCcEEEEeccccccceecccccccccceeecCccceeccccCCccceecCCCccC
Q 001200 559 LTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTS 638 (1125)
Q Consensus 559 L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~ 638 (1125)
|+.|++++| .++...+ ..+..+++|+.|++++|.-...++.. ...++|+.|++++|.-...++....
T Consensus 430 L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~~---------~~~~~L~~L~ls~n~l~~~~~~~~~-- 496 (968)
T PLN00113 430 VYFLDISNN-NLQGRIN-SRKWDMPSLQMLSLARNKFFGGLPDS---------FGSKRLENLDLSRNQFSGAVPRKLG-- 496 (968)
T ss_pred CCEEECcCC-cccCccC-hhhccCCCCcEEECcCceeeeecCcc---------cccccceEEECcCCccCCccChhhh--
Confidence 666666653 3444322 22345566666666666533222221 1235566666666544333332221
Q ss_pred CCCcccEEEEeccCceeeeecccccccccccCcccCCcccceeeeeeecCCceEeeeccccccccccccCCccccccccE
Q 001200 639 KWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKN 718 (1125)
Q Consensus 639 ~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 718 (1125)
.+++|+.|++++|.-...+|... ..+++|++|+|++|.+....+..+ ..+++|+.
T Consensus 497 ~l~~L~~L~Ls~N~l~~~~p~~~-----------------------~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~ 551 (968)
T PLN00113 497 SLSELMQLKLSENKLSGEIPDEL-----------------------SSCKKLVSLDLSHNQLSGQIPASF--SEMPVLSQ 551 (968)
T ss_pred hhhccCEEECcCCcceeeCChHH-----------------------cCccCCCEEECCCCcccccCChhH--hCcccCCE
Confidence 36677777777764443444221 346677777777777765433332 23667788
Q ss_pred EEeeecCCC-cccHHHHhhcCCccEEEEEcceeEEEcc
Q 001200 719 LEVVNDESE-NFRIGFLERFHNLEKLELRWSSYKEIFS 755 (1125)
Q Consensus 719 L~l~~c~~l-~~~~~~l~~l~~L~~L~i~c~~l~~~~~ 755 (1125)
|++++|... .+| ..+.++++|+.|+++.|.+...+|
T Consensus 552 L~Ls~N~l~~~~p-~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 552 LDLSQNQLSGEIP-KNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred EECCCCcccccCC-hhHhcCcccCEEeccCCcceeeCC
Confidence 888877766 444 445677788888888555655444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-32 Score=354.70 Aligned_cols=517 Identities=17% Similarity=0.151 Sum_probs=321.4
Q ss_pred CCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcc-ccCcccC-CCCCCcEEEccCCCCCCcccccCCCCCcEEE
Q 001200 107 YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPSLFH-LPLNLQTLCLDRCALGDIAIIGNLKKLEILS 184 (1125)
Q Consensus 107 ~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~-~lp~~l~-~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~ 184 (1125)
..+++.|++++|.+...++ ..|..+++|++|+|++|.+. .+|..+. .+++||+|+|++|.+......+.+.+|++|+
T Consensus 68 ~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~ 146 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLD 146 (968)
T ss_pred CCcEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEE
Confidence 3579999999998876665 45789999999999999987 6887654 9999999999999987553446799999999
Q ss_pred ccCCCCC-CCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCC
Q 001200 185 LVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHL 263 (1125)
Q Consensus 185 Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L 263 (1125)
+++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+. ...+..++++++|
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L 214 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLV-----------GQIPRELGQMKSL 214 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCc-----------CcCChHHcCcCCc
Confidence 9999987 78999999999999999999844577776 899999999999999876 3456789999999
Q ss_pred CEEEeecCCCc-ccCCccccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHHHhhhccccEEEccccCCccccc
Q 001200 264 TTLEIQICDAM-ILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVL 342 (1125)
Q Consensus 264 ~~L~l~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~ 342 (1125)
+.|++++|.+. .+|. .++.+++|+.|+++++......+
T Consensus 215 ~~L~L~~n~l~~~~p~-----------------------------------------~l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 215 KWIYLGYNNLSGEIPY-----------------------------------------EIGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred cEEECcCCccCCcCCh-----------------------------------------hHhcCCCCCEEECcCceeccccC
Confidence 99999988753 2222 23345677777776654332222
Q ss_pred ccccccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccccccceeccCccCcccccCccEEEeccCCCcCc
Q 001200 343 YDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKN 422 (1125)
Q Consensus 343 ~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~ 422 (1125)
.. +..+++|++|++++|.....++ ..+..+++|+.|++ ++|. +..
T Consensus 254 ~~--l~~l~~L~~L~L~~n~l~~~~p-----~~l~~l~~L~~L~L---------------------------s~n~-l~~ 298 (968)
T PLN00113 254 SS--LGNLKNLQYLFLYQNKLSGPIP-----PSIFSLQKLISLDL---------------------------SDNS-LSG 298 (968)
T ss_pred hh--HhCCCCCCEEECcCCeeeccCc-----hhHhhccCcCEEEC---------------------------cCCe-ecc
Confidence 22 3667788888887765322111 11223444444444 4432 221
Q ss_pred ccchhhhccCCcccEEecccccccchhhcccccCCccCCcccceecCccCEEeecCCCccccccccccccccccccccee
Q 001200 423 IFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKEL 502 (1125)
Q Consensus 423 l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L 502 (1125)
..+ ..+..+++|++|++.++.-...++ .....+++|+.|++.++.-...++. .+..+++|+.|
T Consensus 299 ~~p-~~~~~l~~L~~L~l~~n~~~~~~~------------~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~~~~L~~L 361 (968)
T PLN00113 299 EIP-ELVIQLQNLEILHLFSNNFTGKIP------------VALTSLPRLQVLQLWSNKFSGEIPK----NLGKHNNLTVL 361 (968)
T ss_pred CCC-hhHcCCCCCcEEECCCCccCCcCC------------hhHhcCCCCCEEECcCCCCcCcCCh----HHhCCCCCcEE
Confidence 111 123445555555555432221111 0123345555555554432222221 23445556666
Q ss_pred cccCCCceeecccccCcccccccccccccccceeeccccccccccccCcccccCCCCcEEEEecCCCccccCCchhhhhc
Q 001200 503 STHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNF 582 (1125)
Q Consensus 503 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l 582 (1125)
++++|.... ........+++|+.|++++|.+....+..+. .+++|+.|++++| +++...| ..+..+
T Consensus 362 ~Ls~n~l~~----------~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~--~~~~L~~L~L~~n-~l~~~~p-~~~~~l 427 (968)
T PLN00113 362 DLSTNNLTG----------EIPEGLCSSGNLFKLILFSNSLEGEIPKSLG--ACRSLRRVRLQDN-SFSGELP-SEFTKL 427 (968)
T ss_pred ECCCCeeEe----------eCChhHhCcCCCCEEECcCCEecccCCHHHh--CCCCCCEEECcCC-EeeeECC-hhHhcC
Confidence 666553210 0111122456788888888876554443333 3678888888885 4544434 346678
Q ss_pred cCCcEEEEeccccccceecccccccccceeecCccceeccccCCccceecCCCccCCCCcccEEEEeccCceeeeecccc
Q 001200 583 VQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFL 662 (1125)
Q Consensus 583 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~ 662 (1125)
++|+.|++++|. +....... ...+++|+.|++++|.-...++... ..++|+.|++++|.--..+|...
T Consensus 428 ~~L~~L~Ls~N~-l~~~~~~~-------~~~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~~~- 495 (968)
T PLN00113 428 PLVYFLDISNNN-LQGRINSR-------KWDMPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQFSGAVPRKL- 495 (968)
T ss_pred CCCCEEECcCCc-ccCccChh-------hccCCCCcEEECcCceeeeecCccc---ccccceEEECcCCccCCccChhh-
Confidence 888888888876 43322111 1156777777777776555554322 24677777777764333333111
Q ss_pred cccccccCcccCCcccceeeeeeecCCceEeeeccccccccccccCCccccccccEEEeeecCCCcccHHHHhhcCCccE
Q 001200 663 RFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEK 742 (1125)
Q Consensus 663 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~ 742 (1125)
..+++|++|++++|.+....+..+ ..+++|+.|++++|.........+..+++|+.
T Consensus 496 ----------------------~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 551 (968)
T PLN00113 496 ----------------------GSLSELMQLKLSENKLSGEIPDEL--SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551 (968)
T ss_pred ----------------------hhhhccCEEECcCCcceeeCChHH--cCccCCCEEECCCCcccccCChhHhCcccCCE
Confidence 346677777777776654332222 33566777777777665333344566777777
Q ss_pred EEEEcceeEEEccChhhhhhhhhcccccEEeccCcccccccc
Q 001200 743 LELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIW 784 (1125)
Q Consensus 743 L~i~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~i~ 784 (1125)
|+++++.+....+. .+..+++|+.|++++|+-...++
T Consensus 552 L~Ls~N~l~~~~p~-----~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 552 LDLSQNQLSGEIPK-----NLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred EECCCCcccccCCh-----hHhcCcccCEEeccCCcceeeCC
Confidence 77775555543333 33456667777777666544444
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.96 E-value=5.7e-28 Score=311.43 Aligned_cols=417 Identities=24% Similarity=0.301 Sum_probs=256.5
Q ss_pred HHHHhhcCCCccCCCCCeEEccHHHHHHHHHHHccccceEEecCCCccCCCcccC---------CCCCCEEEeecCCCcc
Q 001200 30 VHKLKDYCLLLDGPTEDWIRMHDLVREVAISIASRDRHVFMLRNDIQIEWPVADM---------LKNCPTIFLHDCKHWE 100 (1125)
Q Consensus 30 ~~~L~~r~l~~~~~~~~~~~mHDli~dla~~i~~~e~~~~~~~~~~~~~~~~~~~---------~~~l~~L~l~~n~~~~ 100 (1125)
++.|+++||++..+ +.+.||||+||||+.+++++.. ..+.+...|...++ ..+++.+++....+.
T Consensus 472 l~~L~~ksLi~~~~--~~~~MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~- 545 (1153)
T PLN03210 472 LKNLVDKSLIHVRE--DIVEMHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID- 545 (1153)
T ss_pred hHHHHhcCCEEEcC--CeEEhhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc-
Confidence 88999999998754 5799999999999999988741 12222222222111 122333333222211
Q ss_pred cCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcc-------ccCcccCCC-CCCcEEEccCCCCCCcc
Q 001200 101 VPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-------SLPSLFHLP-LNLQTLCLDRCALGDIA 172 (1125)
Q Consensus 101 l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~-------~lp~~l~~l-~~Lr~L~L~~~~l~~l~ 172 (1125)
...+...+|.+|++|++|.+..+.+. .+|..+..+ .+||+|++.++.++.++
T Consensus 546 --------------------~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP 605 (1153)
T PLN03210 546 --------------------ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMP 605 (1153)
T ss_pred --------------------eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCC
Confidence 11345566778888888877655321 356666665 35888888888777763
Q ss_pred cccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCC
Q 001200 173 IIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNA 252 (1125)
Q Consensus 173 ~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 252 (1125)
.-..+.+|++|+++++.+..+|.++..+++|++|++++|..+..+|. ++.+++|++|++.+|... ..
T Consensus 606 ~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L-----------~~ 672 (1153)
T PLN03210 606 SNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL-----------VE 672 (1153)
T ss_pred CcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc-----------cc
Confidence 33356788888888888888887788888888888887776777775 677888888888776543 23
Q ss_pred ChhhhCCCCCCCEEEeecCC-CcccCCccccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHHHhhhccccEEE
Q 001200 253 SLQELKLLSHLTTLEIQICD-AMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELY 331 (1125)
Q Consensus 253 ~~~~L~~L~~L~~L~l~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~ 331 (1125)
.+..++.+++|+.|++++|. +..+|..+. +++|+.|+
T Consensus 673 lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~------------------------------------------l~sL~~L~ 710 (1153)
T PLN03210 673 LPSSIQYLNKLEDLDMSRCENLEILPTGIN------------------------------------------LKSLYRLN 710 (1153)
T ss_pred cchhhhccCCCCEEeCCCCCCcCccCCcCC------------------------------------------CCCCCEEe
Confidence 45567777888888887764 344444322 23444555
Q ss_pred ccccCCcccccccccccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccccccceec----cCccCccccc
Q 001200 332 LDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKIC----LGQLRAESFY 407 (1125)
Q Consensus 332 L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~----~~~~~~~~~~ 407 (1125)
+++|...... +. ...+|++|++.++. ++.++ ....+++|+.|.+.++.....+. ........++
T Consensus 711 Lsgc~~L~~~-p~----~~~nL~~L~L~~n~-i~~lP------~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 711 LSGCSRLKSF-PD----ISTNISWLDLDETA-IEEFP------SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCCCcccc-cc----ccCCcCeeecCCCc-ccccc------ccccccccccccccccchhhccccccccchhhhhccc
Confidence 5544332221 11 13456666666554 22222 11235556666655533211110 0000111345
Q ss_pred CccEEEeccCCCcCcccchhhhccCCcccEEecccccccchhhcccccCCccCCcccceecCccCEEeecCCCccccccc
Q 001200 408 KLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYS 487 (1125)
Q Consensus 408 ~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 487 (1125)
+|+.|++++|+.+..+|. .++++++|+.|++++|..++.++. ...+++|+.|++++|..+..++.
T Consensus 779 sL~~L~Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~-------------~~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPS--SIQNLHKLEHLEIENCINLETLPT-------------GINLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred cchheeCCCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeCC-------------CCCccccCEEECCCCCccccccc
Confidence 677777777776666654 256777777777777777766651 12456666666666665554432
Q ss_pred ccccccccccccceecccCCCceeecccccCcccccccccccccccceeeccccccccccccCcccccCCCCcEEEEecC
Q 001200 488 QVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGC 567 (1125)
Q Consensus 488 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C 567 (1125)
..++|+.|+++++.++.+.. .+ ..+++|+.|++++|
T Consensus 844 -----------------------------------------~~~nL~~L~Ls~n~i~~iP~-si--~~l~~L~~L~L~~C 879 (1153)
T PLN03210 844 -----------------------------------------ISTNISDLNLSRTGIEEVPW-WI--EKFSNLSFLDMNGC 879 (1153)
T ss_pred -----------------------------------------cccccCEeECCCCCCccChH-HH--hcCCCCCEEECCCC
Confidence 13456677777766554432 12 23789999999999
Q ss_pred CCccccCCchhhhhccCCcEEEEecccccccee
Q 001200 568 EKLKYLFPSSMIRNFVQLEHLEICYCSSLESIV 600 (1125)
Q Consensus 568 ~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~ 600 (1125)
++|+.+ |.. ...+++|+.|++++|.+++.+.
T Consensus 880 ~~L~~l-~~~-~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 880 NNLQRV-SLN-ISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCcCcc-Ccc-cccccCCCeeecCCCccccccc
Confidence 999987 332 5678899999999999887653
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.95 E-value=3.9e-28 Score=294.84 Aligned_cols=234 Identities=25% Similarity=0.348 Sum_probs=175.0
Q ss_pred chhheecccCCcCCc---ccHHHHHHHHHHHHHHHhhcCCCccCC---CCCeEEccHHHHHHHHHHHc-----cccceEE
Q 001200 2 DLLKYGTGLHIFKGT---YTMQETRDRLYALVHKLKDYCLLLDGP---TEDWIRMHDLVREVAISIAS-----RDRHVFM 70 (1125)
Q Consensus 2 ~Li~~wi~~g~~~~~---~~~~e~~~~~~~~~~~L~~r~l~~~~~---~~~~~~mHDli~dla~~i~~-----~e~~~~~ 70 (1125)
+||.|||||||+++. .+.++.|+.| +.+||+|+|++... +..+|+|||+|||||.++|+ +|.+++
T Consensus 432 ~Li~yWiaEGfi~~~~~~~~~~d~G~~~---i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv- 507 (889)
T KOG4658|consen 432 KLIEYWIAEGFIDPLDGGETAEDVGYDY---IEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIV- 507 (889)
T ss_pred HHHHHHHhccCcCccccccchhcchHHH---HHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEE-
Confidence 689999999999873 3555555555 99999999999765 45899999999999999999 666333
Q ss_pred ecCCCccCCCcccCCCCCCEEEeecCCCcccCCCCCCCCccEEEecCCCC-CCCCChhhhcCCCCCcEEEeecC-Ccccc
Q 001200 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDH-SIKIPNHVFAGMSNLRGLALSNM-QFLSL 148 (1125)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~-~~~l~~~~f~~l~~Lr~L~Ls~~-~i~~l 148 (1125)
..+.+....+........|++++.+|.+..++....+++|++|.+.+|.. ...++..+|..++.||+|||++| .+..+
T Consensus 508 ~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L 587 (889)
T KOG4658|consen 508 SDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL 587 (889)
T ss_pred ECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence 22224444555556678999999999999999999899999999999873 44788888999999999999976 46678
Q ss_pred CcccCCCCCCcEEEccCCCCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCc
Q 001200 149 PSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL 228 (1125)
Q Consensus 149 p~~l~~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L 228 (1125)
|++|+.|.|||||+|++ +.+.++|.++++|+.|+||++..+..+..+| +++..|.+|
T Consensus 588 P~~I~~Li~LryL~L~~----------------------t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~L 644 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSD----------------------TGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSL 644 (889)
T ss_pred ChHHhhhhhhhcccccC----------------------CCccccchHHHHHHhhheecccccccccccc-chhhhcccc
Confidence 87776666666655554 5567788888888888888888777555554 335668888
Q ss_pred cEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecC
Q 001200 229 EDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQIC 271 (1125)
Q Consensus 229 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 271 (1125)
|+|.+...... .+.....++.+|.+|+.+.+...
T Consensus 645 r~L~l~~s~~~---------~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 645 RVLRLPRSALS---------NDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred cEEEeeccccc---------cchhhHHhhhcccchhhheeecc
Confidence 88887665421 12345666777777776666433
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=5.7e-25 Score=237.41 Aligned_cols=298 Identities=18% Similarity=0.230 Sum_probs=211.5
Q ss_pred CCCCCCEEEeecCCCcccCCCC----CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCc
Q 001200 84 MLKNCPTIFLHDCKHWEVPEGL----EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQ 159 (1125)
Q Consensus 84 ~~~~l~~L~l~~n~~~~l~~~~----~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr 159 (1125)
..-+.+-|+.+.+.++.+.... -.+..++|++++|.+. ++...+|.++++|+.+++..|.++.+|.......||+
T Consensus 50 c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~ 128 (873)
T KOG4194|consen 50 CPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLE 128 (873)
T ss_pred CCCCceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhccccccccccee
Confidence 3456677888888887764432 3467788999999887 7888889999999999999999999998777788999
Q ss_pred EEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecC
Q 001200 160 TLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (1125)
Q Consensus 160 ~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~ 236 (1125)
.|+|.+|.|+.+ +.+..+..||.||||+|.|.++|. +|.+=.++++|+|++|. ++.+..+.|.++.+|-+|.+++|
T Consensus 129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred EEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccC
Confidence 999999999988 789999999999999999999985 67777899999999999 99999988999999999999999
Q ss_pred ccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCcc--ccccccEEEEEeCCcccccCCCCCceEEEEeccc
Q 001200 237 SVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYT 314 (1125)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~ 314 (1125)
.++ ...+..+++|++|+.|++..|.++...... .+++|+.+++..+++
T Consensus 208 rit-----------tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I------------------- 257 (873)
T KOG4194|consen 208 RIT-----------TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI------------------- 257 (873)
T ss_pred ccc-----------ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc-------------------
Confidence 987 345678999999999999999875442221 344444444443333
Q ss_pred CChhH-HHhhhccccEEEccccCCcccccccccccccccCcEEEeecCCCeeEeeeCCcccccccccccceeeccccccc
Q 001200 315 SNVDE-VIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHL 393 (1125)
Q Consensus 315 ~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 393 (1125)
..+.. .+..+.++++|+|..+.. ..+-. -.+-++..|+.|++++|. +
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~l-~~vn~-g~lfgLt~L~~L~lS~Na------------------------------I 305 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNRL-QAVNE-GWLFGLTSLEQLDLSYNA------------------------------I 305 (873)
T ss_pred ccccCcceeeecccceeecccchh-hhhhc-ccccccchhhhhccchhh------------------------------h
Confidence 11111 223344455555543221 11110 011344445555554443 2
Q ss_pred ceeccCccCcccccCccEEEeccCCCcCcccchhhhccCCcccEEecccccccchhh
Q 001200 394 EKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIF 450 (1125)
Q Consensus 394 ~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~ 450 (1125)
..+....+ ...++|+.|++++ ++++.+++ ..+..+..|++|.+++ +.+..+-
T Consensus 306 ~rih~d~W--sftqkL~~LdLs~-N~i~~l~~-~sf~~L~~Le~LnLs~-Nsi~~l~ 357 (873)
T KOG4194|consen 306 QRIHIDSW--SFTQKLKELDLSS-NRITRLDE-GSFRVLSQLEELNLSH-NSIDHLA 357 (873)
T ss_pred heeecchh--hhcccceeEeccc-cccccCCh-hHHHHHHHhhhhcccc-cchHHHH
Confidence 22211111 1456777777777 66777766 4467777888888877 5555554
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=3.2e-25 Score=252.71 Aligned_cols=460 Identities=20% Similarity=0.222 Sum_probs=262.6
Q ss_pred EEEeecCCCcccCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCC
Q 001200 90 TIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCAL 168 (1125)
Q Consensus 90 ~L~l~~n~~~~l~~~~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l 168 (1125)
+++++...++-||..+ .-..+..|++..|.+. ..|-.+..+.-+|+.|++++|.+..+|..+..+.+|+.|+++.|.|
T Consensus 2 ~vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 2 HVDASDEQLELIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred CcccccccCcccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhH
Confidence 4566777777787776 4444888888888765 5665666666679999999999999999999999999999999998
Q ss_pred CCc-ccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccc
Q 001200 169 GDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNV 247 (1125)
Q Consensus 169 ~~l-~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 247 (1125)
... .+++++.+|++|.|.+|.+..+|.++..+++|++|++++|. +..+|.- +..++.+..+.+++| ..
T Consensus 81 ~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N-~~-------- 149 (1081)
T KOG0618|consen 81 RSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNN-EK-------- 149 (1081)
T ss_pred hhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcc-hh--------
Confidence 876 88889999999999999999999999999999999999998 8888875 788888888888887 22
Q ss_pred cCCCCChhhhCCCCCCCEEEeecCCC-cccCCccccccccE-EEEEeCCcccccCCCCCceEEEEecccCChhHHHhhhc
Q 001200 248 GRSNASLQELKLLSHLTTLEIQICDA-MILPKGLFSKKLER-YKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLK 325 (1125)
Q Consensus 248 ~~~~~~~~~L~~L~~L~~L~l~~~~~-~~~~~~~~~~~L~~-l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~ 325 (1125)
+..++... ++.+++..+.+ ..++.++ ..++. +++..+.+ . ......++
T Consensus 150 ------~~~lg~~~-ik~~~l~~n~l~~~~~~~i--~~l~~~ldLr~N~~-------------------~--~~dls~~~ 199 (1081)
T KOG0618|consen 150 ------IQRLGQTS-IKKLDLRLNVLGGSFLIDI--YNLTHQLDLRYNEM-------------------E--VLDLSNLA 199 (1081)
T ss_pred ------hhhhcccc-chhhhhhhhhcccchhcch--hhhheeeecccchh-------------------h--hhhhhhcc
Confidence 12233222 55555555443 1222222 11111 11111111 0 00112223
Q ss_pred cccEEEccccCCcccccccccccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccccccceeccCccCccc
Q 001200 326 GIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAES 405 (1125)
Q Consensus 326 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 405 (1125)
+|+.|....+.. ..+. ..-++|+.|....|+..+.. ......+|+.++++. .++..++ ...+.
T Consensus 200 ~l~~l~c~rn~l-----s~l~-~~g~~l~~L~a~~n~l~~~~-------~~p~p~nl~~~dis~-n~l~~lp---~wi~~ 262 (1081)
T KOG0618|consen 200 NLEVLHCERNQL-----SELE-ISGPSLTALYADHNPLTTLD-------VHPVPLNLQYLDISH-NNLSNLP---EWIGA 262 (1081)
T ss_pred chhhhhhhhccc-----ceEE-ecCcchheeeeccCcceeec-------cccccccceeeecch-hhhhcch---HHHHh
Confidence 333333222111 0000 11234444444444322100 011122334444333 1222111 01223
Q ss_pred ccCccEEEeccCCCcCcccchhhhccCCcccEEecccccccchhhcccccCCccCCcccceecCccCEEeecCCCccccc
Q 001200 406 FYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSF 485 (1125)
Q Consensus 406 ~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 485 (1125)
+++|+.+.+.+ +.+..+|.. .....+|+.|.+.. +.++.+++ ....+.+|++|++... ++.++
T Consensus 263 ~~nle~l~~n~-N~l~~lp~r--i~~~~~L~~l~~~~-nel~yip~------------~le~~~sL~tLdL~~N-~L~~l 325 (1081)
T KOG0618|consen 263 CANLEALNANH-NRLVALPLR--ISRITSLVSLSAAY-NELEYIPP------------FLEGLKSLRTLDLQSN-NLPSL 325 (1081)
T ss_pred cccceEecccc-hhHHhhHHH--HhhhhhHHHHHhhh-hhhhhCCC------------cccccceeeeeeehhc-ccccc
Confidence 34444444433 333333221 22233344444433 23333331 1234666777776542 33333
Q ss_pred ccccccccccc-cccceecccCCCceeecccccCcccccccccccccccceeeccccccccccccCcccccCCCCcEEEE
Q 001200 486 YSQVKTSAASQ-TRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIV 564 (1125)
Q Consensus 486 ~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l 564 (1125)
+.. .+... .+|..|..+.++.-..+ . -+...++.|+.|.+.+|.+++-....+ .++.+||.|++
T Consensus 326 p~~---~l~v~~~~l~~ln~s~n~l~~lp---------~-~~e~~~~~Lq~LylanN~Ltd~c~p~l--~~~~hLKVLhL 390 (1081)
T KOG0618|consen 326 PDN---FLAVLNASLNTLNVSSNKLSTLP---------S-YEENNHAALQELYLANNHLTDSCFPVL--VNFKHLKVLHL 390 (1081)
T ss_pred chH---HHhhhhHHHHHHhhhhccccccc---------c-ccchhhHHHHHHHHhcCcccccchhhh--ccccceeeeee
Confidence 331 11111 12344444433221111 1 122346789999999999665433333 34899999999
Q ss_pred ecCCCccccCCchhhhhccCCcEEEEeccccccceecccccccccceeecCccceeccccCCccceecCCCccCCCCccc
Q 001200 565 HGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLK 644 (1125)
Q Consensus 565 ~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~ 644 (1125)
++ +.|..+ |.+.+.++..|++|+++++. ++.++.... .++.|++|...+ +.+..+|.-. .++.|+
T Consensus 391 sy-NrL~~f-pas~~~kle~LeeL~LSGNk-L~~Lp~tva--------~~~~L~tL~ahs-N~l~~fPe~~---~l~qL~ 455 (1081)
T KOG0618|consen 391 SY-NRLNSF-PASKLRKLEELEELNLSGNK-LTTLPDTVA--------NLGRLHTLRAHS-NQLLSFPELA---QLPQLK 455 (1081)
T ss_pred cc-cccccC-CHHHHhchHHhHHHhcccch-hhhhhHHHH--------hhhhhHHHhhcC-Cceeechhhh---hcCcce
Confidence 99 889985 88899999999999999998 888874321 566666665544 3455566322 356777
Q ss_pred EEEEeccCceee
Q 001200 645 KLEVYGCDKVKI 656 (1125)
Q Consensus 645 ~L~i~~C~~L~~ 656 (1125)
.+|+ +|++|+.
T Consensus 456 ~lDl-S~N~L~~ 466 (1081)
T KOG0618|consen 456 VLDL-SCNNLSE 466 (1081)
T ss_pred EEec-ccchhhh
Confidence 7777 3455553
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=8.3e-24 Score=228.50 Aligned_cols=324 Identities=19% Similarity=0.249 Sum_probs=167.9
Q ss_pred CCCCCEEEeecCCCcccCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC-cccCCCCCCcEEE
Q 001200 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLC 162 (1125)
Q Consensus 85 ~~~l~~L~l~~n~~~~l~~~~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~ 162 (1125)
+.+++.+++..|.++.+|... ...+|+.|+|.+|.+. .+....++-++.||+||||.|.|..+| .+|..-.++++|+
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence 344444444444444444444 2333444444444443 344333444444555555555444443 2333334455555
Q ss_pred ccCCCCCCc--ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccc
Q 001200 163 LDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 163 L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
|++|+|+.+ ..|..+.+|-+|.|++|.|+.+|. .|.+|.+|+.|+|..|. ++.+..-.|.+|.+||.|.+..|.+.
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~ 258 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDIS 258 (873)
T ss_pred eccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcc
Confidence 555554444 444444455555555555554442 34445555555554444 44433223444445555544444443
Q ss_pred cccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceEEEEeccc-CChh
Q 001200 240 WEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYT-SNVD 318 (1125)
Q Consensus 240 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~-~~l~ 318 (1125)
...-+.+-.+.++++|++..|++..+.+ .|......++.|+++.+. ..|.
T Consensus 259 -----------kL~DG~Fy~l~kme~l~L~~N~l~~vn~------------------g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 259 -----------KLDDGAFYGLEKMEHLNLETNRLQAVNE------------------GWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred -----------cccCcceeeecccceeecccchhhhhhc------------------ccccccchhhhhccchhhhheee
Confidence 1111233344444444554444433333 233334444444444332 2222
Q ss_pred H-HHhhhccccEEEccccCCcccccccccccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccccccce-e
Q 001200 319 E-VIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEK-I 396 (1125)
Q Consensus 319 ~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~ 396 (1125)
. .-...++|++|+|+.+.... +++-.+..+..|++|.|+.|. +.++-+ ..+..+.+|++|++.+. .+.. +
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~~--l~~~sf~~L~~Le~LnLs~Ns-i~~l~e----~af~~lssL~~LdLr~N-~ls~~I 381 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRITR--LDEGSFRVLSQLEELNLSHNS-IDHLAE----GAFVGLSSLHKLDLRSN-ELSWCI 381 (873)
T ss_pred cchhhhcccceeEecccccccc--CChhHHHHHHHhhhhcccccc-hHHHHh----hHHHHhhhhhhhcCcCC-eEEEEE
Confidence 2 23456788888887754322 333334667888888888875 332211 24556778888888763 2221 1
Q ss_pred ccCccCcccccCccEEEeccCCCcCcccchhhhccCCcccEEecccccccchhh
Q 001200 397 CLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIF 450 (1125)
Q Consensus 397 ~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~ 450 (1125)
..+..+...++.|++|.+.+ ++++.++. ..+.++++|++|++.+ +.+..+-
T Consensus 382 EDaa~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~-NaiaSIq 432 (873)
T KOG4194|consen 382 EDAAVAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGD-NAIASIQ 432 (873)
T ss_pred ecchhhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCC-Ccceeec
Confidence 11223344688999999999 78888876 5688999999999988 5555554
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=4.8e-25 Score=227.98 Aligned_cols=256 Identities=24% Similarity=0.314 Sum_probs=165.0
Q ss_pred CCCEEEeecCCCcccCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccC
Q 001200 87 NCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDR 165 (1125)
Q Consensus 87 ~l~~L~l~~n~~~~l~~~~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~ 165 (1125)
.+..+.+++|.+..+.+.. ++..|.+|.+++|... .+|+.+ +.+..+..|+.+.|.+..+|..++.+..|+.|+.++
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence 4566667777776665555 6677777777777665 566554 566667777777777777777777777777777777
Q ss_pred CCCCCc-ccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCcccccccc
Q 001200 166 CALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (1125)
Q Consensus 166 ~~l~~l-~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~ 244 (1125)
|.+..+ ++++.+..|..|+..+|++.++|.+++.+.+|..|++.+|. +..+|++.+ +++.|++|+...|...
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i-~m~~L~~ld~~~N~L~----- 196 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHI-AMKRLKHLDCNSNLLE----- 196 (565)
T ss_pred cceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHH-HHHHHHhcccchhhhh-----
Confidence 776655 66777777777777777777777777777777777777776 666666633 3777777776555443
Q ss_pred ccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeCCc---c-cccCCCCCceEEEEeccc-CChhH
Q 001200 245 LNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDE---W-DWSGNYKNKRVLKLKLYT-SNVDE 319 (1125)
Q Consensus 245 ~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~---~-~~~~~~~~l~~l~l~~~~-~~l~~ 319 (1125)
..+++++.+.+|..|++..|.+..+|+.-..+.|..+++..+.+ + +.......+..+++..+. .++|.
T Consensus 197 -------tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd 269 (565)
T KOG0472|consen 197 -------TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD 269 (565)
T ss_pred -------cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch
Confidence 34566677777777777777766666333555566655544333 1 222344455556655443 45555
Q ss_pred HHhhhccccEEEccccCCcccccccccccccccCcEEEeecCC
Q 001200 320 VIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (1125)
Q Consensus 320 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 362 (1125)
-...+++|++|+++++.. ....+.+ +++ .|+.|.+.||+
T Consensus 270 e~clLrsL~rLDlSNN~i-s~Lp~sL--gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNNDI-SSLPYSL--GNL-HLKFLALEGNP 308 (565)
T ss_pred HHHHhhhhhhhcccCCcc-ccCCccc--ccc-eeeehhhcCCc
Confidence 556677888888877532 3333333 666 78888888887
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=4.5e-20 Score=238.49 Aligned_cols=190 Identities=21% Similarity=0.340 Sum_probs=152.5
Q ss_pred cCCCCCCEEEeecCCC-------cccCCCC-C-CCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccC
Q 001200 83 DMLKNCPTIFLHDCKH-------WEVPEGL-E-YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFH 153 (1125)
Q Consensus 83 ~~~~~l~~L~l~~n~~-------~~l~~~~-~-~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~ 153 (1125)
..+.+++.|.+..+.. ..+|..+ . ..+||.|.+.++.+. .+|..+ ...+|+.|+++++.+..+|..+.
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccccccccc
Confidence 3477889998876532 1355555 2 357999999988765 788664 57899999999999999999999
Q ss_pred CCCCCcEEEccCCC-CCCcccccCCCCCcEEEccCC-CCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEE
Q 001200 154 LPLNLQTLCLDRCA-LGDIAIIGNLKKLEILSLVDS-NIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDL 231 (1125)
Q Consensus 154 ~l~~Lr~L~L~~~~-l~~l~~~~~L~~L~~L~Ls~~-~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L 231 (1125)
.+++|++|+|++|. +..++.++.+++|++|+|++| .+..+|..++++.+|++|++++|..+..+|.+ + ++++|++|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L 709 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRL 709 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEE
Confidence 99999999999876 677778999999999999998 57899999999999999999999889999986 3 89999999
Q ss_pred EeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEE
Q 001200 232 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIF 291 (1125)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~ 291 (1125)
++++|... .. +.. ...+|+.|+++++.+..+|..+.+.+|..|.+.
T Consensus 710 ~Lsgc~~L-----------~~-~p~--~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~ 755 (1153)
T PLN03210 710 NLSGCSRL-----------KS-FPD--ISTNISWLDLDETAIEEFPSNLRLENLDELILC 755 (1153)
T ss_pred eCCCCCCc-----------cc-ccc--ccCCcCeeecCCCcccccccccccccccccccc
Confidence 99988643 11 111 245789999999998888877666666666543
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=7.1e-25 Score=226.74 Aligned_cols=476 Identities=18% Similarity=0.169 Sum_probs=309.2
Q ss_pred CCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCc-ccccCCCCCcEEEc
Q 001200 107 YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSL 185 (1125)
Q Consensus 107 ~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l-~~~~~L~~L~~L~L 185 (1125)
-..+..|.+++|.+. .+-++ ..++..|.+|++++|.+..+|.+++.+..+..|+.++|.+..+ ..++.+.+|+.|+.
T Consensus 44 qv~l~~lils~N~l~-~l~~d-l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLE-VLRED-LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred hcchhhhhhccCchh-hccHh-hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 457888999999886 44444 3789999999999999999999999999999999999999877 99999999999999
Q ss_pred cCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCE
Q 001200 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (1125)
Q Consensus 186 s~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 265 (1125)
++|.+.++|++|+.+..|..|+..+|+ +..+|.+ ++++.+|..|++.+|.+. +.+++.-+++.|++
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~-~~~~~~l~~l~~~~n~l~------------~l~~~~i~m~~L~~ 187 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPED-MVNLSKLSKLDLEGNKLK------------ALPENHIAMKRLKH 187 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccc-cccCchH-HHHHHHHHHhhccccchh------------hCCHHHHHHHHHHh
Confidence 999999999999999999999999998 9999998 899999999999998876 34445555889999
Q ss_pred EEeecCCCcccCCcc-ccccccEEEEEeCCcc--cccCCCCCceEEEEeccc-CChhH-HHhhhccccEEEccccCCccc
Q 001200 266 LEIQICDAMILPKGL-FSKKLERYKIFIGDEW--DWSGNYKNKRVLKLKLYT-SNVDE-VIMQLKGIEELYLDEVPGIKN 340 (1125)
Q Consensus 266 L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~--~~~~~~~~l~~l~l~~~~-~~l~~-~~~~l~~L~~L~L~~~~~~~~ 340 (1125)
|+...|..+.+|+++ .+.+|+.+++..+.+. ..+...+.++.+.+..+. .-+++ ....++++..|++.++. .+.
T Consensus 188 ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke 266 (565)
T KOG0472|consen 188 LDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKE 266 (565)
T ss_pred cccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-ccc
Confidence 999999999999998 7888888888766652 233444455555555443 22333 44578888889988753 344
Q ss_pred ccccccccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccccccceeccCccCcccccCccEEEe-ccCCC
Q 001200 341 VLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKV-RNCDK 419 (1125)
Q Consensus 341 ~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l-~~C~~ 419 (1125)
++.++ .-+.+|.+|++++|. +..++ ...+.+ .|+.|.+.+.+ ++.+.......+.-.-|++|.= ..|.+
T Consensus 267 ~Pde~--clLrsL~rLDlSNN~-is~Lp-----~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 267 VPDEI--CLLRSLERLDLSNND-ISSLP-----YSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred CchHH--HHhhhhhhhcccCCc-cccCC-----cccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 44443 567889999998886 22221 233444 56666666532 2221111111111111111110 00111
Q ss_pred cCcc----------c--chhhhccCCcccEEecccccccchhhcccccCCccCCcccceecCccCEEeecCCCccccccc
Q 001200 420 LKNI----------F--SFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYS 487 (1125)
Q Consensus 420 L~~l----------~--~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 487 (1125)
+..- + .++....+-+.+.|++++ .++..+|....+... -.-....+++. ..+..+|.
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~---------~~~Vt~Vnfsk-NqL~elPk 405 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAK---------SEIVTSVNFSK-NQLCELPK 405 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhh---------hcceEEEeccc-chHhhhhh
Confidence 1110 0 112344556777888877 566666632111000 00012223332 12333332
Q ss_pred ccccccccccccc-eecccCCCceeecccccCcccccccccccccccceeeccccccccccccCcccccCCCCcEEEEec
Q 001200 488 QVKTSAASQTRLK-ELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHG 566 (1125)
Q Consensus 488 ~~~~~~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~ 566 (1125)
+ ...+..+. .+.++++ ++.++ ......+++|..|++++|.+.++....+. +..|+.|+|+.
T Consensus 406 ~----L~~lkelvT~l~lsnn-~isfv----------~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~---lv~Lq~LnlS~ 467 (565)
T KOG0472|consen 406 R----LVELKELVTDLVLSNN-KISFV----------PLELSQLQKLTFLDLSNNLLNDLPEEMGS---LVRLQTLNLSF 467 (565)
T ss_pred h----hHHHHHHHHHHHhhcC-ccccc----------hHHHHhhhcceeeecccchhhhcchhhhh---hhhhheecccc
Confidence 1 12222222 2223332 22111 01234588899999999888877665443 57799999998
Q ss_pred CCCccccCCchhhhhccCCcEEEEeccccccceecccccccccceeecCccceeccccCCccceecCCCccCCCCcccEE
Q 001200 567 CEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKL 646 (1125)
Q Consensus 567 C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L 646 (1125)
+++..+ | .....+..||.+-.++.. +.+++..... .+.+|..|++.+ ..+..+|.... ++++|++|
T Consensus 468 -NrFr~l-P-~~~y~lq~lEtllas~nq-i~~vd~~~l~-------nm~nL~tLDL~n-Ndlq~IPp~Lg--nmtnL~hL 533 (565)
T KOG0472|consen 468 -NRFRML-P-ECLYELQTLETLLASNNQ-IGSVDPSGLK-------NMRNLTTLDLQN-NDLQQIPPILG--NMTNLRHL 533 (565)
T ss_pred -cccccc-h-HHHhhHHHHHHHHhcccc-ccccChHHhh-------hhhhcceeccCC-CchhhCChhhc--cccceeEE
Confidence 677765 3 334444555555555554 7776554221 677888888876 45777777655 48999999
Q ss_pred EEeccC
Q 001200 647 EVYGCD 652 (1125)
Q Consensus 647 ~i~~C~ 652 (1125)
++++.|
T Consensus 534 eL~gNp 539 (565)
T KOG0472|consen 534 ELDGNP 539 (565)
T ss_pred EecCCc
Confidence 999965
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=4.2e-23 Score=223.95 Aligned_cols=368 Identities=19% Similarity=0.233 Sum_probs=220.7
Q ss_pred CCCccEEEecCCCCC-CCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCc-ccccCCCCCcEEE
Q 001200 107 YPQLEFFCMSPRDHS-IKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILS 184 (1125)
Q Consensus 107 ~~~L~~L~l~~n~~~-~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l-~~~~~L~~L~~L~ 184 (1125)
++-+|-.++++|+++ ..+|.++ ..|++++-|.|....+..+|+.++.+.+|++|.+++|.+..+ ..+..|+.||.++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 345566667777776 3455554 677778888887777777887788888888888888776666 6677777788888
Q ss_pred ccCCCCC--CCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCC
Q 001200 185 LVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSH 262 (1125)
Q Consensus 185 Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~ 262 (1125)
+..|++. .+|..|-+|..|.+|||+.|+ ++++|.+ +..-+++-.|++++|.|... .-.-+-+|+.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~-LE~AKn~iVLNLS~N~IetI-----------Pn~lfinLtD 151 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN-LEYAKNSIVLNLSYNNIETI-----------PNSLFINLTD 151 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhh-hhhcchh-hhhhcCcEEEEcccCccccC-----------CchHHHhhHh
Confidence 8777665 567777788888888888877 7788877 67777777777777776511 1123446666
Q ss_pred CCEEEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHHHhhhccccEEEccccCCccccc
Q 001200 263 LTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVL 342 (1125)
Q Consensus 263 L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~ 342 (1125)
|-.|+++.|++..+|+.+ ..+.+|+.|.|++++...-.+
T Consensus 152 LLfLDLS~NrLe~LPPQ~-----------------------------------------RRL~~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEMLPPQI-----------------------------------------RRLSMLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred HhhhccccchhhhcCHHH-----------------------------------------HHHhhhhhhhcCCChhhHHHH
Confidence 777777777766666543 112233333333321100000
Q ss_pred ccccccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccccccceeccCccCcccccCccEEEeccCCCcCc
Q 001200 343 YDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKN 422 (1125)
Q Consensus 343 ~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~ 422 (1125)
..+ ..+.+|..|++++.... +..+ +.....+.+|..++++. +.+..
T Consensus 191 rQL--PsmtsL~vLhms~TqRT----------------------------l~N~---Ptsld~l~NL~dvDlS~-N~Lp~ 236 (1255)
T KOG0444|consen 191 RQL--PSMTSLSVLHMSNTQRT----------------------------LDNI---PTSLDDLHNLRDVDLSE-NNLPI 236 (1255)
T ss_pred hcC--ccchhhhhhhcccccch----------------------------hhcC---CCchhhhhhhhhccccc-cCCCc
Confidence 000 12223333333332210 0000 11223556667777664 56666
Q ss_pred ccchhhhccCCcccEEecccccccchhhcccccCCccCCcccceecCccCEEeecCCCccccccccccccccccccccee
Q 001200 423 IFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKEL 502 (1125)
Q Consensus 423 l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L 502 (1125)
+|.+ +-.+++|+.|++++ +.++++.. . .....+|+.|
T Consensus 237 vPec--ly~l~~LrrLNLS~-N~iteL~~------------~----------------------------~~~W~~lEtL 273 (1255)
T KOG0444|consen 237 VPEC--LYKLRNLRRLNLSG-NKITELNM------------T----------------------------EGEWENLETL 273 (1255)
T ss_pred chHH--HhhhhhhheeccCc-Cceeeeec------------c----------------------------HHHHhhhhhh
Confidence 6543 55677777777776 44544431 1 1223344445
Q ss_pred cccCCCceeecccccCcccccccccccccccceeeccccccc--cccccCcccccCCCCcEEEEecCCCccccCCchhhh
Q 001200 503 STHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTE--KIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIR 580 (1125)
Q Consensus 503 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~ 580 (1125)
+++.+.....|..- ..++.|+.|.+.+|+++ .+.. .+ +.+..|+.+...+ ++|+-+ | +.+.
T Consensus 274 NlSrNQLt~LP~av-----------cKL~kL~kLy~n~NkL~FeGiPS-GI--GKL~~Levf~aan-N~LElV-P-Eglc 336 (1255)
T KOG0444|consen 274 NLSRNQLTVLPDAV-----------CKLTKLTKLYANNNKLTFEGIPS-GI--GKLIQLEVFHAAN-NKLELV-P-EGLC 336 (1255)
T ss_pred ccccchhccchHHH-----------hhhHHHHHHHhccCcccccCCcc-ch--hhhhhhHHHHhhc-cccccC-c-hhhh
Confidence 55554433333222 24667777777777732 2222 22 2367777777777 677765 5 4467
Q ss_pred hccCCcEEEEeccccccceecccccccccceeecCccceeccccCCccceec
Q 001200 581 NFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFY 632 (1125)
Q Consensus 581 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 632 (1125)
.+..|+.|.++.+. +-.+|.... .+|-|+.|+++..|+|.--|
T Consensus 337 RC~kL~kL~L~~Nr-LiTLPeaIH--------lL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHNR-LITLPEAIH--------LLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhHHHHHhcccccc-eeechhhhh--------hcCCcceeeccCCcCccCCC
Confidence 78899999998776 555654322 67889999999988887544
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=1.5e-22 Score=231.23 Aligned_cols=480 Identities=18% Similarity=0.196 Sum_probs=291.5
Q ss_pred EEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC-cccCCCCCCcEEEccCCCCCCc-ccccCCCCCcEEEccCCCC
Q 001200 113 FCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNI 190 (1125)
Q Consensus 113 L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~L~~~~l~~l-~~~~~L~~L~~L~Ls~~~i 190 (1125)
++.+..... .||..+|.+-. +..|++..|.+-..| +.+.+..+|+.|++++|.+... ..+..+.+|+.|++++|.|
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~-~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEA-LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCc-ccchhhccHHH-HHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhH
Confidence 344444444 57776654444 888888888776655 2344556699999999987765 7888899999999999999
Q ss_pred CCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeec
Q 001200 191 EQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQI 270 (1125)
Q Consensus 191 ~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~ 270 (1125)
.++|.+++++.+|++|+|.+|. +..+|.+ +..+++|+.|++++|.+. ..+..+..++.+..+..++
T Consensus 81 ~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~-~~~lknl~~LdlS~N~f~------------~~Pl~i~~lt~~~~~~~s~ 146 (1081)
T KOG0618|consen 81 RSVPSSCSNMRNLQYLNLKNNR-LQSLPAS-ISELKNLQYLDLSFNHFG------------PIPLVIEVLTAEEELAASN 146 (1081)
T ss_pred hhCchhhhhhhcchhheeccch-hhcCchh-HHhhhcccccccchhccC------------CCchhHHhhhHHHHHhhhc
Confidence 9999889999999999998887 8888888 788999999999888765 2344555666666666666
Q ss_pred CC-CcccCCccccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHHHhhhcccc-EEEccccCCccccccccccc
Q 001200 271 CD-AMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIE-ELYLDEVPGIKNVLYDLDIE 348 (1125)
Q Consensus 271 ~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~-~L~L~~~~~~~~~~~~~~~~ 348 (1125)
|. +..++.. .++.+++..+.. ..++.. ....++ .|+|..+.-. .....
T Consensus 147 N~~~~~lg~~----~ik~~~l~~n~l------------------~~~~~~---~i~~l~~~ldLr~N~~~-----~~dls 196 (1081)
T KOG0618|consen 147 NEKIQRLGQT----SIKKLDLRLNVL------------------GGSFLI---DIYNLTHQLDLRYNEME-----VLDLS 196 (1081)
T ss_pred chhhhhhccc----cchhhhhhhhhc------------------ccchhc---chhhhheeeecccchhh-----hhhhh
Confidence 62 1111110 011111110000 011111 111222 3555543321 12224
Q ss_pred ccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccccccceeccCccCcccccCccEEEeccCCCcCcccchhh
Q 001200 349 GFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSF 428 (1125)
Q Consensus 349 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~ 428 (1125)
.+++|+.|....+...... ..-++|+.|+...++-.+ . .....-.+|++++++. +++..+| .+
T Consensus 197 ~~~~l~~l~c~rn~ls~l~---------~~g~~l~~L~a~~n~l~~-~----~~~p~p~nl~~~dis~-n~l~~lp--~w 259 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELE---------ISGPSLTALYADHNPLTT-L----DVHPVPLNLQYLDISH-NNLSNLP--EW 259 (1081)
T ss_pred hccchhhhhhhhcccceEE---------ecCcchheeeeccCccee-e----ccccccccceeeecch-hhhhcch--HH
Confidence 5566666666555422211 123455555555543221 1 1112234566666665 4555555 34
Q ss_pred hccCCcccEEecccccccchhhcccccCCccCCcccceecCccCEEeecCCCcccccccccccccccccccceecccCCC
Q 001200 429 VRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLP 508 (1125)
Q Consensus 429 ~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 508 (1125)
++.+++|+.+.+.+ +.+..++ .
T Consensus 260 i~~~~nle~l~~n~-N~l~~lp------------------------------------~--------------------- 281 (1081)
T KOG0618|consen 260 IGACANLEALNANH-NRLVALP------------------------------------L--------------------- 281 (1081)
T ss_pred HHhcccceEecccc-hhHHhhH------------------------------------H---------------------
Confidence 55566666665554 3333332 0
Q ss_pred ceeecccccCcccccccccccccccceeeccccccccccccCcccccCCCCcEEEEecCCCccccCCchhhhhccC-CcE
Q 001200 509 REVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQ-LEH 587 (1125)
Q Consensus 509 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~-L~~ 587 (1125)
......+|+.|.+..|.+..+.+..- .+.+|++|++.. ++|.++ |..++..+.. |+.
T Consensus 282 -----------------ri~~~~~L~~l~~~~nel~yip~~le---~~~sL~tLdL~~-N~L~~l-p~~~l~v~~~~l~~ 339 (1081)
T KOG0618|consen 282 -----------------RISRITSLVSLSAAYNELEYIPPFLE---GLKSLRTLDLQS-NNLPSL-PDNFLAVLNASLNT 339 (1081)
T ss_pred -----------------HHhhhhhHHHHHhhhhhhhhCCCccc---ccceeeeeeehh-cccccc-chHHHhhhhHHHHH
Confidence 01123344555555555444433221 257788888877 677775 5454444433 667
Q ss_pred EEEeccccccceecccccccccceeecCccceeccccCCccceecCCCccCCCCcccEEEEeccCceeeeeccccccccc
Q 001200 588 LEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEI 667 (1125)
Q Consensus 588 L~l~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~ 667 (1125)
|+.+..+ +...+..+. ..++.|+.|.+.+.. |++-+.... .++..|+.|++++ +.|.+||....
T Consensus 340 ln~s~n~-l~~lp~~~e-------~~~~~Lq~LylanN~-Ltd~c~p~l-~~~~hLKVLhLsy-NrL~~fpas~~----- 403 (1081)
T KOG0618|consen 340 LNVSSNK-LSTLPSYEE-------NNHAALQELYLANNH-LTDSCFPVL-VNFKHLKVLHLSY-NRLNSFPASKL----- 403 (1081)
T ss_pred Hhhhhcc-ccccccccc-------hhhHHHHHHHHhcCc-ccccchhhh-ccccceeeeeecc-cccccCCHHHH-----
Confidence 7776555 555553222 267888889888854 333222222 2588999999988 68888884321
Q ss_pred ccCcccCCcccceeeeeeecCCceEeeeccccccccccccCCccccccccEEEeeecCCCcccHHHHhhcCCccEEEEEc
Q 001200 668 NEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRW 747 (1125)
Q Consensus 668 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~c 747 (1125)
..+..|++|+++||.+..++.. ...+..|+.|...+|....+| .+.+++.|+.++++|
T Consensus 404 -----------------~kle~LeeL~LSGNkL~~Lp~t---va~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 404 -----------------RKLEELEELNLSGNKLTTLPDT---VANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSC 461 (1081)
T ss_pred -----------------hchHHhHHHhcccchhhhhhHH---HHhhhhhHHHhhcCCceeech--hhhhcCcceEEeccc
Confidence 4588899999999998765421 234667888888777777888 566899999999999
Q ss_pred ceeEEEccChhhhhhhhhc-ccccEEeccCccc
Q 001200 748 SSYKEIFSNEEIVEHAEML-TQVKSLKLWELSD 779 (1125)
Q Consensus 748 ~~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~ 779 (1125)
|++..+.-.. ... ++|++|++++...
T Consensus 462 N~L~~~~l~~------~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 462 NNLSEVTLPE------ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred chhhhhhhhh------hCCCcccceeeccCCcc
Confidence 9998763322 123 7899999998765
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=3.8e-22 Score=216.57 Aligned_cols=334 Identities=21% Similarity=0.234 Sum_probs=237.2
Q ss_pred ecCCCccCCCc-ccCCCCCCEEEeecCCCcccCCCC-CCCCccEEEecCCCCC-CCCChhhhcCCCCCcEEEeecCCccc
Q 001200 71 LRNDIQIEWPV-ADMLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHS-IKIPNHVFAGMSNLRGLALSNMQFLS 147 (1125)
Q Consensus 71 ~~~~~~~~~~~-~~~~~~l~~L~l~~n~~~~l~~~~-~~~~L~~L~l~~n~~~-~~l~~~~f~~l~~Lr~L~Ls~~~i~~ 147 (1125)
++.......|. ...+.++.||++.+|++..+...+ .++.||.+.+..|.+. ..+|+++| .+..|.+||||+|++..
T Consensus 39 Lnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~E 117 (1255)
T KOG0444|consen 39 LNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLRE 117 (1255)
T ss_pred echhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhh
Confidence 33444433432 224778999999999998888776 8999999999887753 46888887 69999999999999999
Q ss_pred cCcccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCC
Q 001200 148 LPSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGL 225 (1125)
Q Consensus 148 lp~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L 225 (1125)
+|..+..-+++-+|+||+|.|..+ +-+-+|..|-+||||+|.++.+|..+.+|.+|++|.|++|. +..+.-.-+-.+
T Consensus 118 vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsm 196 (1255)
T KOG0444|consen 118 VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSM 196 (1255)
T ss_pred cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccc
Confidence 999999999999999999999987 66789999999999999999999999999999999999997 443322225567
Q ss_pred CCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCcc-ccccccEEEEEeCCcccccCCCCC
Q 001200 226 SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKKLERYKIFIGDEWDWSGNYKN 304 (1125)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~ 304 (1125)
++|++|.+++..-+. ...+..+..+.+|+.++++.|.+..+|.-+ .+.+|+.|+++.+.+
T Consensus 197 tsL~vLhms~TqRTl----------~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i--------- 257 (1255)
T KOG0444|consen 197 TSLSVLHMSNTQRTL----------DNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI--------- 257 (1255)
T ss_pred hhhhhhhcccccchh----------hcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce---------
Confidence 889999998876542 234677888899999999999987777766 667777777665443
Q ss_pred ceEEEEecccCChhHHHhhhccccEEEccccCCcccccccccccccccCcEEEeecCCCe-eEeeeCCcccccccccccc
Q 001200 305 KRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFI-LFIVDSMAWVRYNAFLLLE 383 (1125)
Q Consensus 305 l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l-~~l~~~~~~~~~~~~~~L~ 383 (1125)
+.+....+.-.+|+.|+++.+... ..+.. ...++.|+.|.+.+|... +-+| ..++.+.+|+
T Consensus 258 ----------teL~~~~~~W~~lEtLNlSrNQLt-~LP~a--vcKL~kL~kLy~n~NkL~FeGiP-----SGIGKL~~Le 319 (1255)
T KOG0444|consen 258 ----------TELNMTEGEWENLETLNLSRNQLT-VLPDA--VCKLTKLTKLYANNNKLTFEGIP-----SGIGKLIQLE 319 (1255)
T ss_pred ----------eeeeccHHHHhhhhhhccccchhc-cchHH--HhhhHHHHHHHhccCcccccCCc-----cchhhhhhhH
Confidence 222212233456777777664332 12222 256777777777666421 1111 2345566667
Q ss_pred eeecccccccceeccCccCcccccCccEEEeccCCCcCcccchhhhccCCcccEEecccccccchhh
Q 001200 384 SLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIF 450 (1125)
Q Consensus 384 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~ 450 (1125)
.+...+ +.++-++ .....++.|+.|.+.. +++..+|. .+.-++-|+.|++.+.+++..-+
T Consensus 320 vf~aan-N~LElVP---EglcRC~kL~kL~L~~-NrLiTLPe--aIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 320 VFHAAN-NKLELVP---EGLCRCVKLQKLKLDH-NRLITLPE--AIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred HHHhhc-cccccCc---hhhhhhHHHHHhcccc-cceeechh--hhhhcCCcceeeccCCcCccCCC
Confidence 666655 4454432 2234567777777754 66777664 35667788888887777766544
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.4e-18 Score=157.87 Aligned_cols=166 Identities=26% Similarity=0.376 Sum_probs=119.8
Q ss_pred cccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCc-ccccCC
Q 001200 99 WEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNL 177 (1125)
Q Consensus 99 ~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l-~~~~~L 177 (1125)
.+++..+++++++.|.+++|.+. .+|+.+ ..+.+|++|++++|+|+.+|.+++.+++||.|++.-|++..+ ..||.+
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred hhcccccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 44555556667777777777665 456554 677777777777777777777777777777777777776655 777777
Q ss_pred CCCcEEEccCCCCC--CCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChh
Q 001200 178 KKLEILSLVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQ 255 (1125)
Q Consensus 178 ~~L~~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 255 (1125)
+-|++||+.+|++. .+|..|-.|+.|+.|+++.|. +.-+|.+ +++|++||.|.+++|.+. ..+.
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll------------~lpk 167 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL------------SLPK 167 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh------------hCcH
Confidence 77777777777665 567777777777777777776 7777777 677777777777777654 3466
Q ss_pred hhCCCCCCCEEEeecCCCcccCCcc
Q 001200 256 ELKLLSHLTTLEIQICDAMILPKGL 280 (1125)
Q Consensus 256 ~L~~L~~L~~L~l~~~~~~~~~~~~ 280 (1125)
+++.++.|+.|.+.+|++..+|+++
T Consensus 168 eig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHHHhcccceeeecChhh
Confidence 7777777777777777777777765
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.3e-17 Score=153.21 Aligned_cols=152 Identities=24% Similarity=0.357 Sum_probs=142.1
Q ss_pred CCCCCCEEEeecCCCcccCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEE
Q 001200 84 MLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (1125)
Q Consensus 84 ~~~~l~~L~l~~n~~~~l~~~~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~ 162 (1125)
.+.++++|.+++|++..+|+.+ .+.+|++|++++|.+. ++|.++ +.++.||.|+++-|.+..+|..|+.++.|++||
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 4668899999999999999998 8999999999999987 889776 899999999999999999999999999999999
Q ss_pred ccCCCCC--Cc-ccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccc
Q 001200 163 LDRCALG--DI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 163 L~~~~l~--~l-~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
|++|.+. .+ ..|..+..|+.|.++.|+++-+|..+++|++||.|.+..|. +-.+|.+ ++.|+.|++|++.+|.+.
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccceee
Confidence 9999976 33 77888999999999999999999999999999999999998 8899999 899999999999999876
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=3.1e-17 Score=170.63 Aligned_cols=143 Identities=24% Similarity=0.324 Sum_probs=117.3
Q ss_pred EeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccC-CCCC
Q 001200 92 FLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDR-CALG 169 (1125)
Q Consensus 92 ~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~-~~l~ 169 (1125)
+-++..+.++|..+. +....++|..|.+. .+|+.+|+.+++||.|||++|.|+.+ |++|.++..|-.|-+-+ |+|+
T Consensus 52 dCr~~GL~eVP~~LP-~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLP-PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EccCCCcccCcccCC-CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 334445677777763 45667888888887 89999999999999999999999988 88899998877776665 7898
Q ss_pred Cc--ccccCCCCCcEEEccCCCCCCCc-hhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCc
Q 001200 170 DI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (1125)
Q Consensus 170 ~l--~~~~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~ 237 (1125)
.+ ..|++|..|+.|.+.-|.+.-++ ..+..|.+|+.|.+..|. +..++.+.+..+..++++++..|.
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 88 78999999999999888888665 478899999999999988 888998778899999998887765
No 17
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.49 E-value=1.1e-13 Score=114.73 Aligned_cols=68 Identities=32% Similarity=0.451 Sum_probs=62.4
Q ss_pred ccceEEEEEEEecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEecCHHHHHHHHHHhc-CceEEE
Q 001200 1027 RTKQKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQL-CATELV 1094 (1125)
Q Consensus 1027 ~~~~~~~~kv~~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d~~~~~~~l~k~~-~~~~~~ 1094 (1125)
.++++.+++|+|||+||+++|++.+..++||++|.+|.++++|||.|++||..|+++++|++ +.+.++
T Consensus 2 ~~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~ 70 (73)
T KOG1603|consen 2 PPIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELW 70 (73)
T ss_pred CCccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEe
Confidence 35688999999999999999999999999999999999999999999999999999999988 455444
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=4.7e-13 Score=160.13 Aligned_cols=158 Identities=22% Similarity=0.259 Sum_probs=116.6
Q ss_pred CCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCC
Q 001200 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (1125)
Q Consensus 87 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~ 166 (1125)
+-..|+++.+.+..+|..+. ++|+.|++.+|.+. .+|. ..++|++|++++|.++.+|.. .++|+.|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 45678888888888888764 47889999888877 5764 357889999999988888753 467888899888
Q ss_pred CCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCcccccccccc
Q 001200 167 ALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLN 246 (1125)
Q Consensus 167 ~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 246 (1125)
.+..+.. ...+|+.|++++|+++.+|.. +.+|++|++++|. +..+|.. . .+|+.|++++|.+..
T Consensus 273 ~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p---~~L~~L~Ls~N~L~~------ 336 (788)
T PRK15387 273 PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-P---SELCKLWAYNNQLTS------ 336 (788)
T ss_pred chhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC-c---ccccccccccCcccc------
Confidence 8776633 235688889999988888853 4678889998887 8777752 2 357778888877651
Q ss_pred ccCCCCChhhhCCCCCCCEEEeecCCCcccCC
Q 001200 247 VGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (1125)
Q Consensus 247 ~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~ 278 (1125)
+..+ ..+|+.|++++|.+..+|.
T Consensus 337 -------LP~l--p~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 337 -------LPTL--PSGLQELSVSDNQLASLPT 359 (788)
T ss_pred -------cccc--ccccceEecCCCccCCCCC
Confidence 1111 2468888888888776664
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=9e-13 Score=157.73 Aligned_cols=251 Identities=18% Similarity=0.120 Sum_probs=174.6
Q ss_pred eEEecCCCccCCCcccCCCCCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccc
Q 001200 68 VFMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS 147 (1125)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~ 147 (1125)
...+.+......|. ....+++.|++.+|+++.+|.. .++|++|++++|.+. .+|. ..++|+.|++++|.+..
T Consensus 205 ~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~ 276 (788)
T PRK15387 205 VLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTH 276 (788)
T ss_pred EEEcCCCCCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC-cccC----cccccceeeccCCchhh
Confidence 34455666665554 4567899999999999999874 589999999999887 6774 24689999999999998
Q ss_pred cCcccCCCCCCcEEEccCCCCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCC
Q 001200 148 LPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSR 227 (1125)
Q Consensus 148 lp~~l~~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~ 227 (1125)
+|.. +.+|+.|++++|.++.+.. .+++|++|++++|.+..+|... .+|+.|++++|. +..+|.- ..+
T Consensus 277 Lp~l---p~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~l----p~~ 343 (788)
T PRK15387 277 LPAL---PSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPTL----PSG 343 (788)
T ss_pred hhhc---hhhcCEEECcCCccccccc--cccccceeECCCCccccCCCCc---ccccccccccCc-ccccccc----ccc
Confidence 8863 3678899999999887743 3578999999999999888633 357788899988 8888852 257
Q ss_pred ccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceE
Q 001200 228 LEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRV 307 (1125)
Q Consensus 228 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~ 307 (1125)
|++|++++|.+.. +..+ ..+|+.|++++|.+..+|... .+|+.+++..+.+-
T Consensus 344 Lq~LdLS~N~Ls~-------------LP~l--p~~L~~L~Ls~N~L~~LP~l~--~~L~~LdLs~N~Lt----------- 395 (788)
T PRK15387 344 LQELSVSDNQLAS-------------LPTL--PSELYKLWAYNNRLTSLPALP--SGLKELIVSGNRLT----------- 395 (788)
T ss_pred cceEecCCCccCC-------------CCCC--CcccceehhhccccccCcccc--cccceEEecCCccc-----------
Confidence 9999999998761 1111 246778888888887777542 45677666544431
Q ss_pred EEEecccCChhHHHhhhccccEEEccccCCcccccccccccccccCcEEEeecCCCeeEeeeCCcccccccccccceeec
Q 001200 308 LKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVL 387 (1125)
Q Consensus 308 l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l 387 (1125)
.++. ..++|+.|+++++.. .. ++. ...+|+.|++++|. ++.+|. .+..+++|+.|++
T Consensus 396 --------~LP~---l~s~L~~LdLS~N~L-ss-IP~----l~~~L~~L~Ls~Nq-Lt~LP~-----sl~~L~~L~~LdL 452 (788)
T PRK15387 396 --------SLPV---LPSELKELMVSGNRL-TS-LPM----LPSGLLSLSVYRNQ-LTRLPE-----SLIHLSSETTVNL 452 (788)
T ss_pred --------CCCC---cccCCCEEEccCCcC-CC-CCc----chhhhhhhhhccCc-ccccCh-----HHhhccCCCeEEC
Confidence 1111 124677777766542 22 222 13456777777765 334432 2345667777777
Q ss_pred ccc
Q 001200 388 HNL 390 (1125)
Q Consensus 388 ~~~ 390 (1125)
+++
T Consensus 453 s~N 455 (788)
T PRK15387 453 EGN 455 (788)
T ss_pred CCC
Confidence 763
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.43 E-value=9.5e-15 Score=152.34 Aligned_cols=142 Identities=24% Similarity=0.308 Sum_probs=125.5
Q ss_pred EEecCCCccCCCcccCCCCCCEEEeecCCCcccCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeec-CCc
Q 001200 69 FMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSN-MQF 145 (1125)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~--~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~-~~i 145 (1125)
+..++.+..++| .+.+.....+.|..|+|+.+|+.+ .+++||.|+|++|.++ .|.+++|.+++.|..|-+.+ |+|
T Consensus 51 VdCr~~GL~eVP-~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 51 VDCRGKGLTEVP-ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred EEccCCCcccCc-ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCch
Confidence 334566677776 467888999999999999999987 8999999999999998 78889999999988777666 899
Q ss_pred cccC-cccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCC
Q 001200 146 LSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCS 212 (1125)
Q Consensus 146 ~~lp-~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~ 212 (1125)
+++| +.|++|..|+.|.+.-|.+..+ ..|..|++|..|.+..|.+..++. .+..+..++++.+..|.
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 9998 4799999999999999999877 889999999999999999999987 79999999999888776
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=2e-12 Score=156.09 Aligned_cols=175 Identities=21% Similarity=0.296 Sum_probs=96.4
Q ss_pred CCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCC
Q 001200 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (1125)
Q Consensus 87 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~ 166 (1125)
+...|++.++.+..+|..+. +.|+.|++++|.+. .+|..++ .+|++|++++|.++.+|..+. .+|+.|+|++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip-~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP-EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcccc-cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 44566666666666665442 45666666666655 5565443 356666666666666665432 35666666666
Q ss_pred CCCCc-ccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccc
Q 001200 167 ALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (1125)
Q Consensus 167 ~l~~l-~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~ 245 (1125)
.+..+ ..+. .+|++|++++|++..+|..+. .+|++|++++|. +..+|.. +. .+|+.|++++|.+..
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt~----- 318 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLTA----- 318 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCcccc-----
Confidence 66554 2222 356666666666666665443 356666666665 6666643 22 356666666665541
Q ss_pred cccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEE
Q 001200 246 NVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIF 291 (1125)
Q Consensus 246 ~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~ 291 (1125)
.+..+ .++|+.|++++|.+..+|..+. .+|+.|++.
T Consensus 319 -------LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls 354 (754)
T PRK15370 319 -------LPETL--PPGLKTLEAGENALTSLPASLP-PELQVLDVS 354 (754)
T ss_pred -------CCccc--cccceeccccCCccccCChhhc-CcccEEECC
Confidence 01111 1356666666666555554332 345555444
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=1.1e-12 Score=158.24 Aligned_cols=117 Identities=24% Similarity=0.351 Sum_probs=59.1
Q ss_pred CccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCc-ccccCCCCCcEEEccC
Q 001200 109 QLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVD 187 (1125)
Q Consensus 109 ~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l-~~~~~L~~L~~L~Ls~ 187 (1125)
+...|+++++.+. .+|..+ .++|+.|++++|.++.+|..+. .+|++|++++|.++.+ ..+. .+|+.|+|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 3445555555444 444332 2345555555555555554432 3555555555555544 2221 3455555555
Q ss_pred CCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccc
Q 001200 188 SNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 188 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
|.+..+|..+. .+|++|++++|. +..+|.. +. .+|++|++++|.+.
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHNK-ISCLPEN-LP--EELRYLSVYDNSIR 296 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCCc-cCccccc-cC--CCCcEEECCCCccc
Confidence 55555555443 355555555554 5555543 22 35555555555443
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.29 E-value=2.2e-12 Score=158.10 Aligned_cols=128 Identities=25% Similarity=0.344 Sum_probs=104.0
Q ss_pred CCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCC--CCCc--ccccCCCCCcEEEccCC-CCCCCchhhccCCCCCE
Q 001200 131 GMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCA--LGDI--AIIGNLKKLEILSLVDS-NIEQLPEEMAQLTQLRL 205 (1125)
Q Consensus 131 ~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~--l~~l--~~~~~L~~L~~L~Ls~~-~i~~lp~~i~~L~~L~~ 205 (1125)
+....|.+.+.+|.+..++.+..+ +.|++|-+.+|. +..+ ..|..+++|++|||++| .+.+||.+|++|.+||+
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred chhheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 446678888888888877766543 378898888886 5555 45888999999999987 68899999999999999
Q ss_pred EeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCC
Q 001200 206 FDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (1125)
Q Consensus 206 L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 272 (1125)
|+++++. +..+|.+ +++|+.|++|++..+... ...+..+..|++||+|.+....
T Consensus 600 L~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l-----------~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 600 LDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRL-----------ESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccCCC-ccccchH-HHHHHhhheecccccccc-----------ccccchhhhcccccEEEeeccc
Confidence 9999998 9999999 899999999999876543 1224455669999999997654
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.14 E-value=7.4e-13 Score=139.78 Aligned_cols=265 Identities=18% Similarity=0.145 Sum_probs=127.1
Q ss_pred CCCCcEEEEecCCCccccCCchhhhhccCCcEEEEeccccccceecccccccccceeecCccceeccccCCccceecCCC
Q 001200 556 SQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGT 635 (1125)
Q Consensus 556 l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~ 635 (1125)
.+.|+.|++..|.++++..-......+++|++|+++.|+.+..- +...... ....++.+...+|..++.-....
T Consensus 189 C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~-----gv~~~~r-G~~~l~~~~~kGC~e~~le~l~~ 262 (483)
T KOG4341|consen 189 CRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGN-----GVQALQR-GCKELEKLSLKGCLELELEALLK 262 (483)
T ss_pred cchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcC-----cchHHhc-cchhhhhhhhcccccccHHHHHH
Confidence 56777777777777777633335567777777777777766541 1111111 23345555555665443211111
Q ss_pred ccCCCCcccEEEEeccCceeeeecccccccccccCcccCCcccceeeeeeecCCceEeeeccccccccccccCCcccccc
Q 001200 636 HTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRN 715 (1125)
Q Consensus 636 ~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 715 (1125)
....++-+.++++..|..++... ++.+......|+.|+.++|.......-.--....++
T Consensus 263 ~~~~~~~i~~lnl~~c~~lTD~~---------------------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 263 AAAYCLEILKLNLQHCNQLTDED---------------------LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred HhccChHhhccchhhhccccchH---------------------HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 12235556666666776665321 222223455666666666554221100001133466
Q ss_pred ccEEEeeecCCC-cccHHHH-hhcCCccEEEEE-cceeEEEccChhhhhhhhhcccccEEeccCcccccccccCCCC-cc
Q 001200 716 LKNLEVVNDESE-NFRIGFL-ERFHNLEKLELR-WSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSK-LD 791 (1125)
Q Consensus 716 L~~L~l~~c~~l-~~~~~~l-~~l~~L~~L~i~-c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~i~~~~~~-~~ 791 (1125)
|+.|.+..|..+ ..-...+ .+++.|+.+++. |..+.+. ... .-..+++.|+.|.++.|..++.-....+. .-
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-tL~---sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-TLA---SLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-hHh---hhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 777777777755 2111222 255667777666 5443321 000 01124566666666666544432000000 01
Q ss_pred cccCcccEEEEecccCccc-cccCccccCCccEEeEecCCCccccchhHhhhcCCCccEEE
Q 001200 792 SITENLESLEVWWCENLIN-LVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLR 851 (1125)
Q Consensus 792 ~~l~~L~~L~i~~c~~L~~-l~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~ 851 (1125)
.....|+.|.+.+|+.+.. .......+++|+.+++.+|.....-+...+..++|+++...
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 2234455555555555521 11223445555555555555555444444454554444433
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.12 E-value=6.5e-13 Score=140.20 Aligned_cols=299 Identities=16% Similarity=0.150 Sum_probs=139.8
Q ss_pred CCCcEEEEecCCCccccCCchhhhhccCCcEEEEeccccccceecccccccccceeecCccceeccccCCccceecCCCc
Q 001200 557 QNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTH 636 (1125)
Q Consensus 557 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 636 (1125)
..|+.|.+++|....+-....+.+.++++++|.+.+|.++++..-.. . ...++.|++|.+..|+++++......
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s-----l-a~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS-----L-ARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH-----H-HHhcchhhhhhhcccchhHHHHHHHH
Confidence 34666666666655543333445566777777777777655432110 0 01566777777777777666544333
Q ss_pred cCCCCcccEEEEeccCceeeeecccccccccccCcccCCcccceeeeeeecCCceEeeeccccccccccccCCccccccc
Q 001200 637 TSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNL 716 (1125)
Q Consensus 637 ~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 716 (1125)
...|++|+.|+++.|++++.=.. .........++.+.+.||.-.+.-.-.......+-+
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv---------------------~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i 270 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGV---------------------QALQRGCKELEKLSLKGCLELELEALLKAAAYCLEI 270 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcc---------------------hHHhccchhhhhhhhcccccccHHHHHHHhccChHh
Confidence 34577888888888877764110 000022333444444444332211000011222234
Q ss_pred cEEEeeecCCC-cccHH-HHhhcCCccEEEEE-cceeEEEccChhhhhhhhhcccccEEeccCcccccccccCCCCcccc
Q 001200 717 KNLEVVNDESE-NFRIG-FLERFHNLEKLELR-WSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSI 793 (1125)
Q Consensus 717 ~~L~l~~c~~l-~~~~~-~l~~l~~L~~L~i~-c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~i~~~~~~~~~~ 793 (1125)
.++++..|..+ ....+ .-..+..|+.|..+ |+.+.+..-.. ..+.
T Consensus 271 ~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a--------------------------------Lg~~ 318 (483)
T KOG4341|consen 271 LKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA--------------------------------LGQH 318 (483)
T ss_pred hccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH--------------------------------HhcC
Confidence 44444455443 11111 11234455555555 44433211110 0123
Q ss_pred cCcccEEEEecccCcccc--ccCccccCCccEEeEecCCCccccchhHhhhcCCCccEEEEccccchhhhhccCcccccc
Q 001200 794 TENLESLEVWWCENLINL--VPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAED 871 (1125)
Q Consensus 794 l~~L~~L~i~~c~~L~~l--~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 871 (1125)
+.+|+.|.+..|..+... .....+++.|+.+++..|....+-...+...+++.||+|.++.|..+++--..... ..
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~--~~ 396 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS--SS 396 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh--hc
Confidence 344444444444443221 11234455566666666554444333444555566666666666554432000000 00
Q ss_pred cccccccceeccccCcccccccCCCccccCCCccEEEEcccCCccc
Q 001200 872 EIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKI 917 (1125)
Q Consensus 872 ~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~ 917 (1125)
.-....|..+.+.+||.+..-... +...++.||.+++.+|..+.+
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred cccccccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhhh
Confidence 012345666666666655443322 224566777777777766655
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=3.8e-12 Score=139.28 Aligned_cols=192 Identities=22% Similarity=0.275 Sum_probs=154.7
Q ss_pred ecCCCccCCCccc---CCCCCCEEEeecCCCcccCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcc
Q 001200 71 LRNDIQIEWPVAD---MLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL 146 (1125)
Q Consensus 71 ~~~~~~~~~~~~~---~~~~l~~L~l~~n~~~~l~~~~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~ 146 (1125)
+.+...+++|... .+......+++.|++.++|..+ .+..|..+.+..|.+- .+|..+ .++..|.+|+|+.|+++
T Consensus 57 Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS 134 (722)
T KOG0532|consen 57 LSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLS 134 (722)
T ss_pred cccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhh-hhhhHHHHhhhccchhh
Confidence 4455555554322 2445567788889999998887 6788888888888776 677654 78889999999999999
Q ss_pred ccCcccCCCCCCcEEEccCCCCCCc-ccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCC
Q 001200 147 SLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGL 225 (1125)
Q Consensus 147 ~lp~~l~~l~~Lr~L~L~~~~l~~l-~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L 225 (1125)
.+|..++.|+ |++|.+++|+++.+ ..++.+.+|..||.+.|.+..+|..++.|.+|+.|++..|+ +..+|.+ +..
T Consensus 135 ~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~- 210 (722)
T KOG0532|consen 135 HLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCS- 210 (722)
T ss_pred cCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhC-
Confidence 9998887765 89999999998877 88888899999999999999999999999999999999988 8888887 564
Q ss_pred CCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCcc
Q 001200 226 SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL 280 (1125)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~ 280 (1125)
-.|..|+++.|.+. ..+..+.+|++|++|.|.+|.+..-|..+
T Consensus 211 LpLi~lDfScNkis------------~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 211 LPLIRLDFSCNKIS------------YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred CceeeeecccCcee------------ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 46888999988876 35668889999999999998887766666
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=9.7e-11 Score=114.91 Aligned_cols=131 Identities=23% Similarity=0.250 Sum_probs=53.1
Q ss_pred cCCCCCcEEEeecCCccccCcccC-CCCCCcEEEccCCCCCCcccccCCCCCcEEEccCCCCCCCchhh-ccCCCCCEEe
Q 001200 130 AGMSNLRGLALSNMQFLSLPSLFH-LPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEM-AQLTQLRLFD 207 (1125)
Q Consensus 130 ~~l~~Lr~L~Ls~~~i~~lp~~l~-~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i-~~L~~L~~L~ 207 (1125)
.+..++|.|+|.+|.|+.+. .++ .+.+|++|+|++|.|+.++.+..+.+|++|++++|.|++++..+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 35556788888888887764 355 57788888888888888888888888888888888888886655 4688888888
Q ss_pred ecCCCCCCccCc-cccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeec
Q 001200 208 LSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQI 270 (1125)
Q Consensus 208 L~~~~~l~~ip~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~ 270 (1125)
+++|. +.++.. ..++.+++|++|++.+|.+. ....+....+..+++|+.||-..
T Consensus 95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~--------~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC--------EKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGG--------GSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCc-CCChHHhHHHHcCCCcceeeccCCccc--------chhhHHHHHHHHcChhheeCCEE
Confidence 88886 655432 22667888888888888775 22344566677888888887643
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=7.8e-12 Score=136.84 Aligned_cols=187 Identities=22% Similarity=0.315 Sum_probs=154.5
Q ss_pred EEEeecCCCcccCCCC---CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCC
Q 001200 90 TIFLHDCKHWEVPEGL---EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (1125)
Q Consensus 90 ~L~l~~n~~~~l~~~~---~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~ 166 (1125)
+|.|++-++.++|... .+..-...+++.|.+. .+|..+ ..+..|..|.|+.|.|..+|.+++++..|.+|||+.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc
Confidence 5677777777777654 6677778888888887 677664 5677888889999999999999999999999999999
Q ss_pred CCCCc-ccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccc
Q 001200 167 ALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (1125)
Q Consensus 167 ~l~~l-~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~ 245 (1125)
.++.+ ..++.|+ |++|-+++|+++.+|.+++.+..|.+||.+.|. +..+|.. ++.+.+|+.|.+..|.+.
T Consensus 132 qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~------ 202 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE------ 202 (722)
T ss_pred hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh------
Confidence 98877 5666555 899999999999999999988899999999998 8888888 899999999998888765
Q ss_pred cccCCCCChhhhCCCCCCCEEEeecCCCcccCCcc-ccccccEEEEEeCC
Q 001200 246 NVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKKLERYKIFIGD 294 (1125)
Q Consensus 246 ~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~ 294 (1125)
..+.++..|+ |..||++.|++..+|-.+ .+..|+.+.+..+.
T Consensus 203 ------~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 203 ------DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred ------hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 4567788775 889999999999998888 78888888776544
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.00 E-value=2.3e-10 Score=128.88 Aligned_cols=181 Identities=21% Similarity=0.212 Sum_probs=120.9
Q ss_pred CCCCCEEEeecCCCc-----ccCCCC-CCCCccEEEecCCCCCC--C---CChhhhcCCCCCcEEEeecCCccc-cCccc
Q 001200 85 LKNCPTIFLHDCKHW-----EVPEGL-EYPQLEFFCMSPRDHSI--K---IPNHVFAGMSNLRGLALSNMQFLS-LPSLF 152 (1125)
Q Consensus 85 ~~~l~~L~l~~n~~~-----~l~~~~-~~~~L~~L~l~~n~~~~--~---l~~~~f~~l~~Lr~L~Ls~~~i~~-lp~~l 152 (1125)
...++.+++.++.+. .++..+ ..+.++.|+++++.+.. . .....|..+++|+.|++++|.+.. .+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 445788888888773 233333 56778888888776541 0 112346778889999998888762 33334
Q ss_pred CCC---CCCcEEEccCCCCCC-----c-ccccCC-CCCcEEEccCCCCC-----CCchhhccCCCCCEEeecCCCCCCc-
Q 001200 153 HLP---LNLQTLCLDRCALGD-----I-AIIGNL-KKLEILSLVDSNIE-----QLPEEMAQLTQLRLFDLSGCSKLKV- 216 (1125)
Q Consensus 153 ~~l---~~Lr~L~L~~~~l~~-----l-~~~~~L-~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~- 216 (1125)
..+ ++|++|++++|.+.. + ..+..+ .+|+.|++++|.+. .++..+..+.+|++|++++|. +..
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~ 180 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDA 180 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchH
Confidence 333 449999999888762 2 456666 88899999998877 344567778889999998887 552
Q ss_pred ----cCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCc
Q 001200 217 ----IPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (1125)
Q Consensus 217 ----ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 274 (1125)
++.. +..+++|++|++++|.+.-.+ .......+..+++|++|++++|.+.
T Consensus 181 ~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~-------~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 181 GIRALAEG-LKANCNLEVLDLNNNGLTDEG-------ASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHH-HHhCCCCCEEeccCCccChHH-------HHHHHHHhcccCCCCEEecCCCcCc
Confidence 2322 455678999999888765110 0112344667788999999888753
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.00 E-value=1.5e-10 Score=130.36 Aligned_cols=174 Identities=20% Similarity=0.172 Sum_probs=118.9
Q ss_pred EEeecCCCc--ccCCCC-CCCCccEEEecCCCCCCC----CChhhhcCCCCCcEEEeecCCccc-------cCcccCCCC
Q 001200 91 IFLHDCKHW--EVPEGL-EYPQLEFFCMSPRDHSIK----IPNHVFAGMSNLRGLALSNMQFLS-------LPSLFHLPL 156 (1125)
Q Consensus 91 L~l~~n~~~--~l~~~~-~~~~L~~L~l~~n~~~~~----l~~~~f~~l~~Lr~L~Ls~~~i~~-------lp~~l~~l~ 156 (1125)
|+|.++.+. .+...+ .+..|+.|++.++.+... ++ ..+...+.|+.|+++++.+.. ++..+..++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~-~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALA-SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHH-HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 455555543 222222 456799999999876421 22 234677789999999887662 345677888
Q ss_pred CCcEEEccCCCCCC-c-ccccCC---CCCcEEEccCCCCCC-----CchhhccC-CCCCEEeecCCCCCC-----ccCcc
Q 001200 157 NLQTLCLDRCALGD-I-AIIGNL---KKLEILSLVDSNIEQ-----LPEEMAQL-TQLRLFDLSGCSKLK-----VIPPN 220 (1125)
Q Consensus 157 ~Lr~L~L~~~~l~~-l-~~~~~L---~~L~~L~Ls~~~i~~-----lp~~i~~L-~~L~~L~L~~~~~l~-----~ip~~ 220 (1125)
+|++|++++|.+.. . ..+..+ ++|++|++++|.+.. +...+..+ .+|+.|++++|. +. .++..
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~ 160 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKA 160 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHH
Confidence 99999999998763 2 444444 449999999998762 34456777 899999999998 55 23333
Q ss_pred ccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCc
Q 001200 221 LLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (1125)
Q Consensus 221 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 274 (1125)
+..+.+|++|++++|.+..... ......+..+++|++|++++|.+.
T Consensus 161 -~~~~~~L~~L~l~~n~l~~~~~-------~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 161 -LRANRDLKELNLANNGIGDAGI-------RALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred -HHhCCCcCEEECcCCCCchHHH-------HHHHHHHHhCCCCCEEeccCCccC
Confidence 6677889999999988762110 122345666789999999988753
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=6.1e-11 Score=119.41 Aligned_cols=183 Identities=15% Similarity=0.168 Sum_probs=142.8
Q ss_pred CCCCCCEEEeecCCCcccCCCC-CCCCccEEEecCCCCCC---CCChh-------------------hhcCCCCCcEEEe
Q 001200 84 MLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSI---KIPNH-------------------VFAGMSNLRGLAL 140 (1125)
Q Consensus 84 ~~~~l~~L~l~~n~~~~l~~~~-~~~~L~~L~l~~n~~~~---~l~~~-------------------~f~~l~~Lr~L~L 140 (1125)
++++++.+-++.++-..+-... .-+.|.++.+.+..+.. -+|.. .....+.|..|||
T Consensus 212 ~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDL 291 (490)
T KOG1259|consen 212 AFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDL 291 (490)
T ss_pred HhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccc
Confidence 4677888888887765554433 34677888775543210 01100 1123456899999
Q ss_pred ecCCccccCcccCCCCCCcEEEccCCCCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCcc
Q 001200 141 SNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPN 220 (1125)
Q Consensus 141 s~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~ 220 (1125)
|+|.|+.+-.++.-++.+|.|++++|+|..+..+..|.+|+.||||+|.+.++-..=.+|-|.++|.|++|. +..+..
T Consensus 292 S~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LSG- 369 (490)
T KOG1259|consen 292 SGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETLSG- 369 (490)
T ss_pred cccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhhhh-
Confidence 999999998888889999999999999999988999999999999999998887767789999999999998 888875
Q ss_pred ccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCc
Q 001200 221 LLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKG 279 (1125)
Q Consensus 221 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~ 279 (1125)
+++|.+|..|++++|.|..- .....+++|+.|++|.+.+|.+..++..
T Consensus 370 -L~KLYSLvnLDl~~N~Ie~l----------deV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 370 -LRKLYSLVNLDLSSNQIEEL----------DEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred -hHhhhhheeccccccchhhH----------HHhcccccccHHHHHhhcCCCccccchH
Confidence 89999999999999998721 1256788999999999999987665543
No 32
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=98.98 E-value=1.8e-09 Score=87.29 Aligned_cols=57 Identities=25% Similarity=0.280 Sum_probs=52.8
Q ss_pred EEEE-EecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEecCH---HHHHHHHHHhcC
Q 001200 1033 VLKL-EIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDA---VPVVRKLRKQLC 1089 (1125)
Q Consensus 1033 ~~kv-~~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d~---~~~~~~l~k~~~ 1089 (1125)
+++| +|+|++|+++|.++|.+++||.++.+|.++++++|+++.+. .++.++|++.|+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy 61 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGY 61 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTS
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCc
Confidence 4788 49999999999999999999999999999999999999554 999999999886
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=4.4e-10 Score=110.28 Aligned_cols=119 Identities=23% Similarity=0.286 Sum_probs=33.8
Q ss_pred CCCEEEeecCCCcccCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCccc-CCCCCCcEEEcc
Q 001200 87 NCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLF-HLPLNLQTLCLD 164 (1125)
Q Consensus 87 ~l~~L~l~~n~~~~l~~~~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l-~~l~~Lr~L~L~ 164 (1125)
++|.|+|++|.|..+...- .+.+|+.|++++|.+. ++.. |..+++|++|++++|.|+.++..+ ..+++|++|+++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 4566666666666554332 3455666666666554 3432 345566666666666665554333 245566666666
Q ss_pred CCCCCCc---ccccCCCCCcEEEccCCCCCCCch----hhccCCCCCEEee
Q 001200 165 RCALGDI---AIIGNLKKLEILSLVDSNIEQLPE----EMAQLTQLRLFDL 208 (1125)
Q Consensus 165 ~~~l~~l---~~~~~L~~L~~L~Ls~~~i~~lp~----~i~~L~~L~~L~L 208 (1125)
+|.|.++ ..+..+++|++|++.+|.+..-+. .+..+++|+.||-
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 6655433 444555555566655555543332 2344555555543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=1.4e-10 Score=116.85 Aligned_cols=127 Identities=24% Similarity=0.252 Sum_probs=62.6
Q ss_pred CCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCc-ccccCCCCCcEEEcc
Q 001200 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLV 186 (1125)
Q Consensus 108 ~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l-~~~~~L~~L~~L~Ls 186 (1125)
..|++++|++|.+. .+..++ .-++.+|+|++|.|.|..+-. +..+++|..|||++|.+..+ ..-.+|.|.+.|.|+
T Consensus 284 q~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchh-hhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 44555555555443 333332 334455555555555544422 44555555555555555544 333345555555555
Q ss_pred CCCCCCCchhhccCCCCCEEeecCCCCCCccCc-cccCCCCCccEEEeecCccc
Q 001200 187 DSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 187 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~-~~l~~L~~L~~L~l~~~~~~ 239 (1125)
.|.|+.+. ++++|++|.+||+++|+ +..+.. ..|++|+.|+++.+.+|.+.
T Consensus 361 ~N~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 361 QNKIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence 55555443 45555555555555554 333221 11556666666666555544
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=4.5e-09 Score=121.81 Aligned_cols=186 Identities=26% Similarity=0.308 Sum_probs=115.2
Q ss_pred EEeecCCC-cccCCCCCCCCccEEEecCCCCCCCCChhhhcCCC-CCcEEEeecCCccccCcccCCCCCCcEEEccCCCC
Q 001200 91 IFLHDCKH-WEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMS-NLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCAL 168 (1125)
Q Consensus 91 L~l~~n~~-~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~-~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l 168 (1125)
+.+..+.+ .........+.++.|.+.+|.+. +++... ..+. +|+.|++++|.+..+|..+..+++|+.|++++|.+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 45555554 23333335566777777777665 555433 2332 67777777777777766677777777777777777
Q ss_pred CCcc-cccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccc
Q 001200 169 GDIA-IIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNV 247 (1125)
Q Consensus 169 ~~l~-~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 247 (1125)
..+. ..+.+.+|+.|++++|.+..+|..++.+.+|++|.+++|. +..++.. +.++.++..|.+.+|.+.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~-------- 245 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE-------- 245 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee--------
Confidence 7663 3337777777777777777777666666667777777775 3333333 566667766666655543
Q ss_pred cCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEe
Q 001200 248 GRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFI 292 (1125)
Q Consensus 248 ~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~ 292 (1125)
..+..++.+++++.|+++.|.+..++......+++.+++..
T Consensus 246 ----~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 246 ----DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSG 286 (394)
T ss_pred ----eccchhccccccceeccccccccccccccccCccCEEeccC
Confidence 11345566666777777777766666533555666665543
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=1.4e-08 Score=117.62 Aligned_cols=103 Identities=32% Similarity=0.509 Sum_probs=53.4
Q ss_pred CCCCcEEEeecCCccccCcccCCCC-CCcEEEccCCCCCCc-ccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeec
Q 001200 132 MSNLRGLALSNMQFLSLPSLFHLPL-NLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLS 209 (1125)
Q Consensus 132 l~~Lr~L~Ls~~~i~~lp~~l~~l~-~Lr~L~L~~~~l~~l-~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~ 209 (1125)
++.++.|++.+|.+..+|.....+. +|+.|++++|.+..+ ..++.+++|+.|++++|.+..+|...+.+.+|+.|+++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 3445555555555555554444443 555555555555544 45555555555555555555555544455555555555
Q ss_pred CCCCCCccCccccCCCCCccEEEeecC
Q 001200 210 GCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (1125)
Q Consensus 210 ~~~~l~~ip~~~l~~L~~L~~L~l~~~ 236 (1125)
+|. +..+|.. ++.+..|++|.+++|
T Consensus 195 ~N~-i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 195 GNK-ISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred CCc-cccCchh-hhhhhhhhhhhhcCC
Confidence 555 5555543 234444555555554
No 37
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.64 E-value=9.7e-08 Score=78.64 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=57.1
Q ss_pred ceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCC--eEEEEE-ecCHHHHHHHHHHhcCceEE
Q 001200 1029 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDK--KMIVIG-DIDAVPVVRKLRKQLCATEL 1093 (1125)
Q Consensus 1029 ~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~--~~~v~g-~~d~~~~~~~l~k~~~~~~~ 1093 (1125)
|.++.++|. |+|++|+.+|.++|.+++||.+|.+|.+.+ .|++.+ .++..++.+++.+.|+.+..
T Consensus 1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~ 69 (71)
T COG2608 1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEE 69 (71)
T ss_pred CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeee
Confidence 356789998 999999999999999999999999999995 566666 48999999999999987654
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5.8e-09 Score=111.48 Aligned_cols=201 Identities=21% Similarity=0.191 Sum_probs=136.0
Q ss_pred CCCCCCEEEeecCCCcccCC--CC-CCCCccEEEecCCCCCCCCC-hhhhcCCCCCcEEEeecCCccccCcc--cCCCCC
Q 001200 84 MLKNCPTIFLHDCKHWEVPE--GL-EYPQLEFFCMSPRDHSIKIP-NHVFAGMSNLRGLALSNMQFLSLPSL--FHLPLN 157 (1125)
Q Consensus 84 ~~~~l~~L~l~~n~~~~l~~--~~-~~~~L~~L~l~~n~~~~~l~-~~~f~~l~~Lr~L~Ls~~~i~~lp~~--l~~l~~ 157 (1125)
.+++||.++|.++.+...+. -+ .|++++.|+|++|-+..-.+ -.+...+++|+.|+++.|.+...-++ -..+.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 46789999999988876663 23 79999999999987652111 34557899999999999987644222 236789
Q ss_pred CcEEEccCCCCC--Cc-ccccCCCCCcEEEccCCC-CCCCchhhccCCCCCEEeecCCCCCCccCcc-ccCCCCCccEEE
Q 001200 158 LQTLCLDRCALG--DI-AIIGNLKKLEILSLVDSN-IEQLPEEMAQLTQLRLFDLSGCSKLKVIPPN-LLSGLSRLEDLY 232 (1125)
Q Consensus 158 Lr~L~L~~~~l~--~l-~~~~~L~~L~~L~Ls~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~-~l~~L~~L~~L~ 232 (1125)
|+.|.|++|.++ ++ .....+++|+.|+|..|. +..--.+...+..|+.|||++|. +-.++.. ..+.++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhh
Confidence 999999999987 34 556678899999999984 33223345667889999999988 5555421 167888899998
Q ss_pred eecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCcc---ccccccEEEE
Q 001200 233 MGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL---FSKKLERYKI 290 (1125)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~---~~~~L~~l~l 290 (1125)
++.+.+.-... ............++|++|++..|.+...+.-- ..++|+.+.+
T Consensus 278 ls~tgi~si~~-----~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 278 LSSTGIASIAE-----PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred ccccCcchhcC-----CCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 88887751111 01112223456778889999888875544322 3344444443
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=7.6e-09 Score=110.59 Aligned_cols=180 Identities=21% Similarity=0.228 Sum_probs=137.0
Q ss_pred cCCCCCCEEEeecCCCcccCCCC----CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcc--ccCcccCCCC
Q 001200 83 DMLKNCPTIFLHDCKHWEVPEGL----EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL--SLPSLFHLPL 156 (1125)
Q Consensus 83 ~~~~~l~~L~l~~n~~~~l~~~~----~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~--~lp~~l~~l~ 156 (1125)
..+.++|.|+|+.|-++.+.... .+++|+.|+++.|.+........-..+++|+.|.+++|+++ ++-..+..++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 35789999999999887665443 79999999999998764444333346889999999999987 3444566789
Q ss_pred CCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCCc--hhhccCCCCCEEeecCCCCCCccC--cc----ccCCCC
Q 001200 157 NLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVIP--PN----LLSGLS 226 (1125)
Q Consensus 157 ~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~ip--~~----~l~~L~ 226 (1125)
+|..|+|.+|....+ .....+..|+.|||++|++..++ .-++.++.|+.|+++.|. +.++. +. ....+.
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFP 301 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccc
Confidence 999999999962222 56677899999999999888777 457999999999999987 66542 21 025678
Q ss_pred CccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCC
Q 001200 227 RLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1125)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 273 (1125)
+|++|++..|.+. .-..+..+..+.+|+.|.+..+.+
T Consensus 302 kL~~L~i~~N~I~----------~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 302 KLEYLNISENNIR----------DWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cceeeecccCccc----------cccccchhhccchhhhhhcccccc
Confidence 9999999999884 112355666777788888776654
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=2.1e-07 Score=74.96 Aligned_cols=59 Identities=34% Similarity=0.461 Sum_probs=42.2
Q ss_pred CCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccCCC
Q 001200 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (1125)
Q Consensus 108 ~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~~ 167 (1125)
++|++|++++|.+. .+|..+|.++++|++|++++|.+..+ |.+|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45677777777665 67777777777777777777777776 3567777777777777765
No 41
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.36 E-value=1.3e-06 Score=82.92 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=64.5
Q ss_pred ceEEEEEEEecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEecCHHHHHHHHHHhcCceEEEecC
Q 001200 1029 KQKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVSIG 1097 (1125)
Q Consensus 1029 ~~~~~~kv~~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~~~ 1097 (1125)
.-++++-|+|+|+.|...+++.|..++||++|++|.+++.|.|.+.+-+.++..+|+..|+.|-+.-.+
T Consensus 6 ~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~G~G 74 (247)
T KOG4656|consen 6 TYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLRGAG 74 (247)
T ss_pred ceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEecCC
Confidence 356889999999999999999999999999999999999999999999999999999999999887654
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=5.2e-09 Score=117.96 Aligned_cols=174 Identities=20% Similarity=0.210 Sum_probs=129.7
Q ss_pred CCCCCEEEeecCCCcccCCCCC-CCCccEEEecCCCC---------CCCCChhhhcCCCCCcEEEeecCCccccCcccCC
Q 001200 85 LKNCPTIFLHDCKHWEVPEGLE-YPQLEFFCMSPRDH---------SIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHL 154 (1125)
Q Consensus 85 ~~~l~~L~l~~n~~~~l~~~~~-~~~L~~L~l~~n~~---------~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~ 154 (1125)
++.+|+|-+.++++........ -..|+.|...+.-- .+++-+.. ..-.|.+-+.+.|.+..+-.++.-
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHHHH
Confidence 6789999999998876443332 24455555433210 01111111 123477778888888877778888
Q ss_pred CCCCcEEEccCCCCCCcccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEe
Q 001200 155 PLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYM 233 (1125)
Q Consensus 155 l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l 233 (1125)
+++|+.|||++|.+.....+..+.+|++|||++|.+..+|. +...+. |+.|++++|. ++.+-. +.+|++|+.|++
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~g--ie~LksL~~LDl 261 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTLRG--IENLKSLYGLDL 261 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccH-HHhhhh--HHhhhhhhccch
Confidence 89999999999999999999999999999999999999885 344444 9999999998 888865 899999999999
Q ss_pred ecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCc
Q 001200 234 GNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (1125)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 274 (1125)
++|-+. +...+.-|..|..|+.|++.+|.+.
T Consensus 262 syNll~----------~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 262 SYNLLS----------EHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHhhhh----------cchhhhHHHHHHHHHHHhhcCCccc
Confidence 999876 1234566777888999999998764
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.31 E-value=5.4e-08 Score=112.74 Aligned_cols=172 Identities=23% Similarity=0.237 Sum_probs=93.8
Q ss_pred CCCCEEEeecCCCcccCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEcc
Q 001200 86 KNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLD 164 (1125)
Q Consensus 86 ~~l~~L~l~~n~~~~l~~~~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~ 164 (1125)
..+..+++..|.+..+...+ .+++|..|++..|.+. .+... +..+++|++|++++|.|..+. .+..+..|+.|+++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchh-hcccc-hhhhhcchheecccccccccc-chhhccchhhheec
Confidence 34444455555555433322 4566666666666554 33321 345666666666666666653 35555666666666
Q ss_pred CCCCCCcccccCCCCCcEEEccCCCCCCCchh-hccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccc
Q 001200 165 RCALGDIAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (1125)
Q Consensus 165 ~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~ 243 (1125)
+|.|..+..+..+..|+.+++++|.+..+... ...+.+|+.+.+.+|. +..+.. +..+..+..+++..|.+.
T Consensus 149 ~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~---- 221 (414)
T KOG0531|consen 149 GNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKIS---- 221 (414)
T ss_pred cCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccce----
Confidence 66666666666666666666666666655433 4556666666666665 444432 334444444444444443
Q ss_pred cccccCCCCChhhhCCCCC--CCEEEeecCCCccc
Q 001200 244 GLNVGRSNASLQELKLLSH--LTTLEIQICDAMIL 276 (1125)
Q Consensus 244 ~~~~~~~~~~~~~L~~L~~--L~~L~l~~~~~~~~ 276 (1125)
.+..+..+.. |+.+++.++.+...
T Consensus 222 ---------~~~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 222 ---------KLEGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred ---------eccCcccchhHHHHHHhcccCccccc
Confidence 1222222222 66777777666544
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.30 E-value=4.3e-07 Score=73.07 Aligned_cols=58 Identities=33% Similarity=0.575 Sum_probs=39.8
Q ss_pred CCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCc
Q 001200 179 KLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (1125)
Q Consensus 179 ~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~ 237 (1125)
+|++|++++|++..+|. .|..+++|++|++++|. +..++.++|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 56667777777776663 56667777777777666 677766666777777777776664
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.25 E-value=7.6e-08 Score=111.55 Aligned_cols=129 Identities=25% Similarity=0.318 Sum_probs=90.3
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCcccccCCCCCcEEEc
Q 001200 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (1125)
Q Consensus 106 ~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~L 185 (1125)
.+..++.+.+..|.+. ++. +-...+++|..|++.+|.|..+...+..+.+|++|++++|.|+.+..+..+..|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~-~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KIL-NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhh-hhh-cccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhee
Confidence 3455666666666554 222 21356777888888888887776557777888888888888888777777777888888
Q ss_pred cCCCCCCCchhhccCCCCCEEeecCCCCCCccCc-cccCCCCCccEEEeecCccc
Q 001200 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 186 s~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~-~~l~~L~~L~~L~l~~~~~~ 239 (1125)
++|.|..++ .+..+.+|+.+++++|. +..++. . +..+.+|+.+++.+|.+.
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence 888777665 45557788888888877 666665 2 266777777777777654
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.22 E-value=3e-06 Score=102.78 Aligned_cols=105 Identities=27% Similarity=0.435 Sum_probs=89.9
Q ss_pred CCcEEEeecCCcc-ccCcccCCCCCCcEEEccCCCCC-Cc-ccccCCCCCcEEEccCCCCC-CCchhhccCCCCCEEeec
Q 001200 134 NLRGLALSNMQFL-SLPSLFHLPLNLQTLCLDRCALG-DI-AIIGNLKKLEILSLVDSNIE-QLPEEMAQLTQLRLFDLS 209 (1125)
Q Consensus 134 ~Lr~L~Ls~~~i~-~lp~~l~~l~~Lr~L~L~~~~l~-~l-~~~~~L~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~ 209 (1125)
.++.|+|++|.+. .+|..++.+++|++|+|++|.+. .+ ..++.+.+|++|+|++|.+. .+|..+++|.+|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999988 67889999999999999999987 44 67999999999999999988 789999999999999999
Q ss_pred CCCCCCccCccccCC-CCCccEEEeecCccc
Q 001200 210 GCSKLKVIPPNLLSG-LSRLEDLYMGNTSVK 239 (1125)
Q Consensus 210 ~~~~l~~ip~~~l~~-L~~L~~L~l~~~~~~ 239 (1125)
+|.....+|.. ++. +.++..+++.+|...
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCccc
Confidence 99855688877 554 457788888887643
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.13 E-value=2.9e-07 Score=96.21 Aligned_cols=180 Identities=17% Similarity=0.151 Sum_probs=124.1
Q ss_pred CCCCEEEeecCCCc-c-cC---CCC-CCCCccEEEecCCCCCCCCChh-------------hhcCCCCCcEEEeecCCcc
Q 001200 86 KNCPTIFLHDCKHW-E-VP---EGL-EYPQLEFFCMSPRDHSIKIPNH-------------VFAGMSNLRGLALSNMQFL 146 (1125)
Q Consensus 86 ~~l~~L~l~~n~~~-~-l~---~~~-~~~~L~~L~l~~n~~~~~l~~~-------------~f~~l~~Lr~L~Ls~~~i~ 146 (1125)
.+++.|+|+.|-+. . ++ ..+ .+..|+.|.|.+|.+.. .-.. ....-+.||++...+|.+.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~-~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGP-EAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCCh-hHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 47889999988763 1 22 112 68889999998887642 1111 1234567999999998876
Q ss_pred ccC-----cccCCCCCCcEEEccCCCCCC-----c-ccccCCCCCcEEEccCCCCCC-----CchhhccCCCCCEEeecC
Q 001200 147 SLP-----SLFHLPLNLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIEQ-----LPEEMAQLTQLRLFDLSG 210 (1125)
Q Consensus 147 ~lp-----~~l~~l~~Lr~L~L~~~~l~~-----l-~~~~~L~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~ 210 (1125)
.-+ ..|...+.|+.+.++.|.|.. + ..+..++||++|||..|-++. +-..+..+++|+.|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 443 356677889999999988762 1 678889999999999987663 344567788899999999
Q ss_pred CCCCCccC-----ccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCc
Q 001200 211 CSKLKVIP-----PNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (1125)
Q Consensus 211 ~~~l~~ip-----~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 274 (1125)
|. +..-. ..+-...++|++|.+.+|.+..... ......+...+.|+.|++++|...
T Consensus 251 cl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~-------~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 251 CL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAA-------LALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHH-------HHHHHHHhcchhhHHhcCCccccc
Confidence 86 44322 1112356789999999998873322 223334556888899999988863
No 48
>PLN03150 hypothetical protein; Provisional
Probab=98.13 E-value=4.4e-06 Score=101.36 Aligned_cols=104 Identities=25% Similarity=0.304 Sum_probs=88.0
Q ss_pred CCcEEEccCCCCCC-c-ccccCCCCCcEEEccCCCCC-CCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEe
Q 001200 157 NLQTLCLDRCALGD-I-AIIGNLKKLEILSLVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYM 233 (1125)
Q Consensus 157 ~Lr~L~L~~~~l~~-l-~~~~~L~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l 233 (1125)
.++.|+|++|.+.. + ..++++.+|++|+|++|.+. .+|..++.+.+|++|+|++|.....+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47899999999873 3 78999999999999999997 88999999999999999999844578877 899999999999
Q ss_pred ecCccccccccccccCCCCChhhhCCC-CCCCEEEeecCC
Q 001200 234 GNTSVKWEFEGLNVGRSNASLQELKLL-SHLTTLEIQICD 272 (1125)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~L~~L-~~L~~L~l~~~~ 272 (1125)
++|.+. +..+..++.+ .++..+++.+|.
T Consensus 498 s~N~l~-----------g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLS-----------GRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCccc-----------ccCChHHhhccccCceEEecCCc
Confidence 999876 3455666653 467788888876
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.09 E-value=9.1e-06 Score=89.78 Aligned_cols=136 Identities=18% Similarity=0.224 Sum_probs=75.0
Q ss_pred CCcccEEEEeccCceeeeecccccccccccCcccCCcccceeeeeeecCCceEeeeccccccccccccCCccccccccEE
Q 001200 640 WPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNL 719 (1125)
Q Consensus 640 ~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 719 (1125)
+..+..|+|++| .|+++| ..+++|++|.+++|...... |....++|+.|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP--------------------------~LP~sLtsL~Lsnc~nLtsL----P~~LP~nLe~L 99 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP--------------------------VLPNELTEITIENCNNLTTL----PGSIPEGLEKL 99 (426)
T ss_pred hcCCCEEEeCCC-CCcccC--------------------------CCCCCCcEEEccCCCCcccC----Cchhhhhhhhe
Confidence 456777888887 677666 23556778888777665433 33334568888
Q ss_pred EeeecCCC-cccHHHHhhcCCccEEEEEcceeEEEccChhhhhhhhhcccccEEeccCcccccccccCCCCcccccCccc
Q 001200 720 EVVNDESE-NFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLE 798 (1125)
Q Consensus 720 ~l~~c~~l-~~~~~~l~~l~~L~~L~i~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~i~~~~~~~~~~l~~L~ 798 (1125)
++++|..+ .+| ++|+.|++.++....+.. ..++|++|.+.+....... . .....+++|+
T Consensus 100 ~Ls~Cs~L~sLP-------~sLe~L~L~~n~~~~L~~---------LPssLk~L~I~~~n~~~~~-~---lp~~LPsSLk 159 (426)
T PRK15386 100 TVCHCPEISGLP-------ESVRSLEIKGSATDSIKN---------VPNGLTSLSINSYNPENQA-R---IDNLISPSLK 159 (426)
T ss_pred EccCcccccccc-------cccceEEeCCCCCccccc---------CcchHhheecccccccccc-c---cccccCCccc
Confidence 88877655 333 457777776444332211 1345667766442211110 0 0012346677
Q ss_pred EEEEecccCccccccCccccCCccEEeEecC
Q 001200 799 SLEVWWCENLINLVPSSASFKNLTTLELWYC 829 (1125)
Q Consensus 799 ~L~i~~c~~L~~l~~~~~~~~~L~~L~i~~C 829 (1125)
+|.|.+|..+. +|.. ...+|+.|+++.+
T Consensus 160 ~L~Is~c~~i~-LP~~--LP~SLk~L~ls~n 187 (426)
T PRK15386 160 TLSLTGCSNII-LPEK--LPESLQSITLHIE 187 (426)
T ss_pred EEEecCCCccc-Cccc--ccccCcEEEeccc
Confidence 77777776553 2222 2256777776653
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=1.5e-05 Score=88.16 Aligned_cols=138 Identities=20% Similarity=0.219 Sum_probs=88.4
Q ss_pred HhhcCCccEEEEE-cceeEEEccChhhhhhhhhcccccEEeccCcccccccccCCCCcccccCcccEEEEecccCccccc
Q 001200 734 LERFHNLEKLELR-WSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLV 812 (1125)
Q Consensus 734 l~~l~~L~~L~i~-c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~i~~~~~~~~~~l~~L~~L~i~~c~~L~~l~ 812 (1125)
+..+.+++.|+|+ | .+++++. ..++|++|.+++|.+|+.+++ ..+++|++|.|++|.++.++|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---------LP~sLtsL~Lsnc~nLtsLP~------~LP~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---------LPNELTEITIENCNNLTTLPG------SIPEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---------CCCCCcEEEccCCCCcccCCc------hhhhhhhheEccCcccccccc
Confidence 4557889999999 6 7777642 246799999999988888753 234688999999888887765
Q ss_pred cCccccCCccEEeEec--CCCccccchhHhhhcCCCccEEEEccccchhhhhccCcccccccccccccceeccccCcccc
Q 001200 813 PSSASFKNLTTLELWY--CQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLT 890 (1125)
Q Consensus 813 ~~~~~~~~L~~L~i~~--C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 890 (1125)
. +|+.|++.. |..+..+| ++|+.|.+.++....... .....+++|+.|.+.+|..+.
T Consensus 112 ~------sLe~L~L~~n~~~~L~~LP--------ssLk~L~I~~~n~~~~~~-------lp~~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 112 E------SVRSLEIKGSATDSIKNVP--------NGLTSLSINSYNPENQAR-------IDNLISPSLKTLSLTGCSNII 170 (426)
T ss_pred c------ccceEEeCCCCCcccccCc--------chHhheeccccccccccc-------cccccCCcccEEEecCCCccc
Confidence 3 467777653 23344443 456777775432110000 011235679999998888663
Q ss_pred cccCCCccccCCCccEEEEcccC
Q 001200 891 SFCSGNYTLKFPSLEDLFVIECP 913 (1125)
Q Consensus 891 ~l~~~~~~~~~~sL~~L~i~~C~ 913 (1125)
+|.+ -..+|+.|.+..+.
T Consensus 171 -LP~~----LP~SLk~L~ls~n~ 188 (426)
T PRK15386 171 -LPEK----LPESLQSITLHIEQ 188 (426)
T ss_pred -Cccc----ccccCcEEEecccc
Confidence 3322 13588888887653
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=3.6e-07 Score=92.89 Aligned_cols=186 Identities=22% Similarity=0.143 Sum_probs=86.3
Q ss_pred CCceEeeeccccccccccccCCccccccccEEEeeecCCCcccHHHHhhcCCccEEEEE-cceeEEEccChhhhhhhhhc
Q 001200 688 SKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELR-WSSYKEIFSNEEIVEHAEML 766 (1125)
Q Consensus 688 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~-c~~l~~~~~~~~~~~~~~~l 766 (1125)
..|++||++...+.... -+.....+.+|+.|.+.+...-.-....+..-.+|+.|+|+ |+++++- .... .+..+
T Consensus 185 sRlq~lDLS~s~it~st-l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-~~~l---l~~sc 259 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVST-LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-ALQL---LLSSC 259 (419)
T ss_pred hhhHHhhcchhheeHHH-HHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh-HHHH---HHHhh
Confidence 45788888876553210 01112345566666666655432112334445566666666 6666542 1100 12234
Q ss_pred ccccEEeccCcccccccccCCCCcccccCcccEEEEecccCccccccC--ccccCCccEEeEecCCCc-cccchhHhhhc
Q 001200 767 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPS--SASFKNLTTLELWYCQRL-MNLVTSSTAKS 843 (1125)
Q Consensus 767 ~~L~~L~l~~~~~L~~i~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~--~~~~~~L~~L~i~~C~~L-~~l~~~~~~~~ 843 (1125)
+.|.+|+|+.| ......... ..--..|+.|++++|.+- ..--.+...+.
T Consensus 260 s~L~~LNlsWc----------------------------~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 260 SRLDELNLSWC----------------------------FLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR 311 (419)
T ss_pred hhHhhcCchHh----------------------------hccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence 44555555444 333211000 111234555566655432 11112334455
Q ss_pred CCCccEEEEccccchhhhhccCcccccccccccccceeccccCcccccccCCCccccCCCccEEEEcccC
Q 001200 844 LVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECP 913 (1125)
Q Consensus 844 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~ 913 (1125)
+++|..|++++|-.++.-+..+ ...|+.|++|.++.|..+--=-.- ....-|+|.+|+|.+|-
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~------~~kf~~L~~lSlsRCY~i~p~~~~-~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQE------FFKFNYLQHLSLSRCYDIIPETLL-ELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CCceeeeccccccccCchHHHH------HHhcchheeeehhhhcCCChHHee-eeccCcceEEEEecccc
Confidence 5666666666665554322211 123666666666666543110000 01245788888888764
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.6e-07 Score=93.90 Aligned_cols=63 Identities=17% Similarity=0.072 Sum_probs=38.9
Q ss_pred cccCccEEEeccCCCcCcccchhhhccCCcccEEecccccccchhhcccccCCccCCcccceecCccCEEeecCC
Q 001200 405 SFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFL 479 (1125)
Q Consensus 405 ~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 479 (1125)
..|+|..|++++|..++. ..+..+-+++.|++|.++.|..+.--. -......|+|.+|++.+|
T Consensus 311 rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~-----------~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPET-----------LLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHH-----------eeeeccCcceEEEEeccc
Confidence 567777888888777766 333446677778888887776553111 002345566666666665
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.94 E-value=3.1e-06 Score=102.03 Aligned_cols=113 Identities=23% Similarity=0.271 Sum_probs=50.5
Q ss_pred hhhcCCCCCcEEEeecCCcc--ccCcccCCCCCCcEEEccCCCCCCcccccCCCCCcEEEccCCCCCCCc--hhhccCCC
Q 001200 127 HVFAGMSNLRGLALSNMQFL--SLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLP--EEMAQLTQ 202 (1125)
Q Consensus 127 ~~f~~l~~Lr~L~Ls~~~i~--~lp~~l~~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp--~~i~~L~~ 202 (1125)
.+...++.||.|.+++-.+. .+-....++++|+.||+|++.++.+..+++|++|++|.+.+-.+..-. ..+.+|++
T Consensus 142 kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 142 KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence 33334445555555443332 112223344555555555555555555555555555555444433222 23444555
Q ss_pred CCEEeecCCCCCCcc--Cc---cccCCCCCccEEEeecCccc
Q 001200 203 LRLFDLSGCSKLKVI--PP---NLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 203 L~~L~L~~~~~l~~i--p~---~~l~~L~~L~~L~l~~~~~~ 239 (1125)
|++||+|.......- .. +.-..|++|+.|+.+++.+.
T Consensus 222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 555555544311110 00 00123667777777766554
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=9.5e-06 Score=59.50 Aligned_cols=39 Identities=41% Similarity=0.477 Sum_probs=23.3
Q ss_pred CCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCcc
Q 001200 134 NLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIA 172 (1125)
Q Consensus 134 ~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l~ 172 (1125)
+|++|++++|.|+.+|..++++++|++|++++|.+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566666666666666655666666666666666655443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.5e-05 Score=58.37 Aligned_cols=41 Identities=37% Similarity=0.599 Sum_probs=28.0
Q ss_pred CCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCc
Q 001200 178 KKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP 219 (1125)
Q Consensus 178 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~ 219 (1125)
++|++|++++|+|+.+|..+++|++|++|++++|. +.+++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 35777777777777777667777777777777776 666553
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.85 E-value=2.6e-06 Score=89.21 Aligned_cols=149 Identities=17% Similarity=0.160 Sum_probs=69.6
Q ss_pred CCCCccEEEecCCCCCCC---CChhhhcCCCCCcEEEeecCCcc----ccCc-------ccCCCCCCcEEEccCCCCC--
Q 001200 106 EYPQLEFFCMSPRDHSIK---IPNHVFAGMSNLRGLALSNMQFL----SLPS-------LFHLPLNLQTLCLDRCALG-- 169 (1125)
Q Consensus 106 ~~~~L~~L~l~~n~~~~~---l~~~~f~~l~~Lr~L~Ls~~~i~----~lp~-------~l~~l~~Lr~L~L~~~~l~-- 169 (1125)
....++.+++++|.+... .-...+.+.++||..++++..-. .+|. ++-..++|++||||+|-+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 344555555665554321 11223455556666666654211 2232 3344556666666666543
Q ss_pred ---Cc-ccccCCCCCcEEEccCCCCCCCchh-hccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCcccccccc
Q 001200 170 ---DI-AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (1125)
Q Consensus 170 ---~l-~~~~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~ 244 (1125)
.+ .-+..+..|++|.|.+|.+...-.. +++ .|.+|. .+. . +++-+.|+++...+|...-.+
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~k-------k-~~~~~~Lrv~i~~rNrlen~g-- 173 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNK-------K-AASKPKLRVFICGRNRLENGG-- 173 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHh-------c-cCCCcceEEEEeecccccccc--
Confidence 11 3344456666666666655422111 111 111111 000 1 344456777776666654111
Q ss_pred ccccCCCCChhhhCCCCCCCEEEeecCCC
Q 001200 245 LNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1125)
Q Consensus 245 ~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 273 (1125)
.......++..+.|+.+.+..|.+
T Consensus 174 -----a~~~A~~~~~~~~leevr~~qN~I 197 (382)
T KOG1909|consen 174 -----ATALAEAFQSHPTLEEVRLSQNGI 197 (382)
T ss_pred -----HHHHHHHHHhccccceEEEecccc
Confidence 122334456666677777766654
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.76 E-value=3.9e-05 Score=74.43 Aligned_cols=120 Identities=21% Similarity=0.282 Sum_probs=71.0
Q ss_pred CCEEEeecCCCcccCC-CCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccC-CCCCCcEEEccC
Q 001200 88 CPTIFLHDCKHWEVPE-GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFH-LPLNLQTLCLDR 165 (1125)
Q Consensus 88 l~~L~l~~n~~~~l~~-~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~-~l~~Lr~L~L~~ 165 (1125)
-+.+++.+.++..+.. +.-......++|..|++. .++ .|..++.|.+|.+++|.|..+-..+. -+++|.+|.|.+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchh-hcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 3455565555543333 123455666777777654 332 25677777777777777777743343 346677777777
Q ss_pred CCCCCc---ccccCCCCCcEEEccCCCCCCCch----hhccCCCCCEEeecC
Q 001200 166 CALGDI---AIIGNLKKLEILSLVDSNIEQLPE----EMAQLTQLRLFDLSG 210 (1125)
Q Consensus 166 ~~l~~l---~~~~~L~~L~~L~Ls~~~i~~lp~----~i~~L~~L~~L~L~~ 210 (1125)
|.|..+ ..+..++.|++|.+-+|.+++-+. .+.++++|++||..+
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 776544 555666777777777776655432 244555555555443
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.76 E-value=1.5e-05 Score=96.26 Aligned_cols=134 Identities=18% Similarity=0.266 Sum_probs=79.9
Q ss_pred CCCCcEEEeecCCcc--ccCcccC-CCCCCcEEEccCCCCC--Cc-ccccCCCCCcEEEccCCCCCCCchhhccCCCCCE
Q 001200 132 MSNLRGLALSNMQFL--SLPSLFH-LPLNLQTLCLDRCALG--DI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRL 205 (1125)
Q Consensus 132 l~~Lr~L~Ls~~~i~--~lp~~l~-~l~~Lr~L~L~~~~l~--~l-~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 205 (1125)
-.+|++|+++|...- .=|..++ .|++||.|.+++-.+. ++ .-..++++|+.||+|+++++.+ .++++|++|++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 456788888775422 1123333 4578888888776543 23 4556778888888888888777 57888888888
Q ss_pred EeecCCCCCCccC--ccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCC
Q 001200 206 FDLSGCSKLKVIP--PNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1125)
Q Consensus 206 L~L~~~~~l~~ip--~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 273 (1125)
|.+.+-. +..-. .+ +.+|++|+.||++......... -...-++--..|++||.||.+++.+
T Consensus 200 L~mrnLe-~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~-----ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLE-FESYQDLID-LFNLKKLRVLDISRDKNNDDTK-----IIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCC-CCchhhHHH-HhcccCCCeeeccccccccchH-----HHHHHHHhcccCccccEEecCCcch
Confidence 8776543 22211 12 6678888888887654320000 0000012223577888888876654
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=8.1e-07 Score=100.81 Aligned_cols=122 Identities=26% Similarity=0.238 Sum_probs=58.7
Q ss_pred CCCEEEeecCCCcccCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcc-cCCCCCCcEEEcc
Q 001200 87 NCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL-FHLPLNLQTLCLD 164 (1125)
Q Consensus 87 ~l~~L~l~~n~~~~l~~~~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~-l~~l~~Lr~L~L~ 164 (1125)
.+...+.+.|.+..+...+ -++.|+.|+|++|.+. ++. ++..+.+|++|||+.|.+..+|.- ...+ +|..|+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhh-hheeeeec
Confidence 4445555555555444444 2455555555555543 222 334555555555555555555431 1122 25555555
Q ss_pred CCCCCCcccccCCCCCcEEEccCCCCCCCc--hhhccCCCCCEEeecCCC
Q 001200 165 RCALGDIAIIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFDLSGCS 212 (1125)
Q Consensus 165 ~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~ 212 (1125)
+|.++.+..+.+|++|+.||+++|-+.... ..++.|..|+.|.|.||.
T Consensus 241 nN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 241 NNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 555555555555555555555555333221 123444445555555544
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.64 E-value=2.5e-06 Score=102.34 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=47.8
Q ss_pred CCCCcEEEEecCCCccccCCchhhhhccCCcEEEEecc-ccccceecccccccccceeecCccceeccccCCccceecCC
Q 001200 556 SQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYC-SSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPG 634 (1125)
Q Consensus 556 l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c-~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 634 (1125)
.+.|+.|.+.+|..+....-.......+.|++|++++| ......+... ......+++|+.|++..|..+++....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL----LLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh----hhhhhhcCCcCccchhhhhccCchhHH
Confidence 46666666666666665321234556667777777663 2111111000 001113456666666666654444333
Q ss_pred CccCCCCcccEEEEeccCcee
Q 001200 635 THTSKWPMLKKLEVYGCDKVK 655 (1125)
Q Consensus 635 ~~~~~~~~L~~L~i~~C~~L~ 655 (1125)
.....|++|+.|.+.+|..++
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLT 283 (482)
T ss_pred HHHhhCCCcceEccCCCCccc
Confidence 222236666666666666543
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.62 E-value=7.5e-05 Score=72.48 Aligned_cols=108 Identities=22% Similarity=0.291 Sum_probs=76.8
Q ss_pred CCCcEEEccCCCCCCcccccCCCCCcEEEccCCCCCCCchhhcc-CCCCCEEeecCCCCCCccCc-cccCCCCCccEEEe
Q 001200 156 LNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQ-LTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLYM 233 (1125)
Q Consensus 156 ~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~-L~~L~~L~L~~~~~l~~ip~-~~l~~L~~L~~L~l 233 (1125)
.....+||++|.+..+..|..+..|.+|.+++|+|..+-..+.. +.+|+.|.+.+|+ +.++.+ +-+..++.|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeee
Confidence 45667777777777777777778888888888888777555544 4468888888876 554432 11567788888888
Q ss_pred ecCccccccccccccCCCCChhhhCCCCCCCEEEeecCC
Q 001200 234 GNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (1125)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 272 (1125)
-+|.+. .+.+.....+..+++|+.||.+...
T Consensus 121 l~Npv~--------~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVE--------HKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchh--------cccCceeEEEEecCcceEeehhhhh
Confidence 888765 4445667778888899998887543
No 62
>PLN02957 copper, zinc superoxide dismutase
Probab=97.54 E-value=0.00041 Score=72.79 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=65.0
Q ss_pred ceEEEEEEEecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEecCHHHHHHHHHHhcCceEEEecCCCC
Q 001200 1029 KQKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVSIGPAN 1100 (1125)
Q Consensus 1029 ~~~~~~kv~~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~~~~~~ 1100 (1125)
-+++.++|.|+|+.|+.++.+++.+++||.++.+|...++++|.+++++..+++.+++.++.++++..++++
T Consensus 5 ~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~~ 76 (238)
T PLN02957 5 ELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIGQGDPE 76 (238)
T ss_pred cEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEecCCCcc
Confidence 367889999999999999999999999999999999999999999889999999999999888888765543
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.49 E-value=7.4e-06 Score=73.92 Aligned_cols=109 Identities=17% Similarity=0.226 Sum_probs=55.1
Q ss_pred CCEEEeecCCCcccCCCC----CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEc
Q 001200 88 CPTIFLHDCKHWEVPEGL----EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (1125)
Q Consensus 88 l~~L~l~~n~~~~l~~~~----~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L 163 (1125)
+..++|+.|.+-.++... ....|...++++|.+. ++|..+-...+.++.|++++|.|..+|..+..++.||.
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~--- 104 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRS--- 104 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhh---
Confidence 445566665544333221 3344444555555444 44444433444455555555555555544444444544
Q ss_pred cCCCCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCcc
Q 001200 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPN 220 (1125)
Q Consensus 164 ~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~ 220 (1125)
|+++.|.+...|..|..|.+|-+|+..++. ...+|-+
T Consensus 105 -------------------lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 105 -------------------LNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred -------------------cccccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 455555555555555556666666665555 4555543
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.49 E-value=1.2e-05 Score=96.44 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=23.5
Q ss_pred cccccEEEeeecCCC--cccHHHHhhcCCccEEEEE-ccee
Q 001200 713 FRNLKNLEVVNDESE--NFRIGFLERFHNLEKLELR-WSSY 750 (1125)
Q Consensus 713 ~~~L~~L~l~~c~~l--~~~~~~l~~l~~L~~L~i~-c~~l 750 (1125)
+++|+.|.+.+|..+ ..-....+.+++|++|+|+ |..+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 556777776666653 2223445567777777777 6665
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.39 E-value=1.7e-05 Score=71.65 Aligned_cols=105 Identities=21% Similarity=0.299 Sum_probs=79.7
Q ss_pred CCCcEEEeecCCccccCcc---cCCCCCCcEEEccCCCCCCc-cccc-CCCCCcEEEccCCCCCCCchhhccCCCCCEEe
Q 001200 133 SNLRGLALSNMQFLSLPSL---FHLPLNLQTLCLDRCALGDI-AIIG-NLKKLEILSLVDSNIEQLPEEMAQLTQLRLFD 207 (1125)
Q Consensus 133 ~~Lr~L~Ls~~~i~~lp~~---l~~l~~Lr~L~L~~~~l~~l-~~~~-~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~ 207 (1125)
+.+..++|+++.+-.+++. +...++|...+|++|.+..+ ..|. +.+.+..|++++|.|..+|.++..++.|+.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 3456667777766555443 44556677777888777755 3333 44578888999999999999999999999999
Q ss_pred ecCCCCCCccCccccCCCCCccEEEeecCccc
Q 001200 208 LSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 208 L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
++.|. +...|.- +..|.+|-.|+..+|.+.
T Consensus 107 l~~N~-l~~~p~v-i~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNP-LNAEPRV-IAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccCc-cccchHH-HHHHHhHHHhcCCCCccc
Confidence 99999 8888876 677999999998777654
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.00012 Score=75.10 Aligned_cols=38 Identities=26% Similarity=0.367 Sum_probs=18.9
Q ss_pred CCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCC
Q 001200 225 LSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (1125)
Q Consensus 225 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 272 (1125)
+.+|++|.+.|..+.|.. .-..+..++.++.|.++.|.
T Consensus 120 ~~nl~~lVLNgT~L~w~~----------~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQ----------STSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred ccceEEEEEcCCCCChhh----------hhhhhhcchhhhhhhhccch
Confidence 345555555555554421 12334455555555555553
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.21 E-value=0.00017 Score=72.91 Aligned_cols=85 Identities=21% Similarity=0.249 Sum_probs=44.7
Q ss_pred CCCCcEEEeecCCcc-----ccCcccCCCCCCcEEEccCCCCC-----------Cc-ccccCCCCCcEEEccCCCCC-CC
Q 001200 132 MSNLRGLALSNMQFL-----SLPSLFHLPLNLQTLCLDRCALG-----------DI-AIIGNLKKLEILSLVDSNIE-QL 193 (1125)
Q Consensus 132 l~~Lr~L~Ls~~~i~-----~lp~~l~~l~~Lr~L~L~~~~l~-----------~l-~~~~~L~~L~~L~Ls~~~i~-~l 193 (1125)
+..+..++||||.|. .+...|.+-.+|++.++++-... -+ ..+-++++|+..+||.|.+. +.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 445555555555543 23334445556666665543221 01 44556666667777666544 33
Q ss_pred ch----hhccCCCCCEEeecCCCCCCcc
Q 001200 194 PE----EMAQLTQLRLFDLSGCSKLKVI 217 (1125)
Q Consensus 194 p~----~i~~L~~L~~L~L~~~~~l~~i 217 (1125)
|. -|+.-+.|.||.+++|. +..+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG-lGp~ 135 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG-LGPI 135 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC-CCcc
Confidence 32 34555666666666665 4443
No 68
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.19 E-value=0.00071 Score=85.65 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=60.3
Q ss_pred cceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEecCHHHHHHHHHHhcCceEEEe
Q 001200 1028 TKQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVS 1095 (1125)
Q Consensus 1028 ~~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~ 1095 (1125)
|+++++++|+ |+|.+|.++|.+++.+++||..|.+|.+ +.+|++.+++..+.+.+++.|+.+++.+
T Consensus 1 ~~~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 67 (834)
T PRK10671 1 MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQAGYDASVSH 67 (834)
T ss_pred CCeEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhcCCcccccc
Confidence 6688999998 9999999999999999999999999994 6777888999999999999999888764
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=5.1e-05 Score=76.93 Aligned_cols=107 Identities=25% Similarity=0.338 Sum_probs=81.0
Q ss_pred CCCCCcEEEccCCCCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCc-cccCCCCCccEEE
Q 001200 154 LPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLY 232 (1125)
Q Consensus 154 ~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~-~~l~~L~~L~~L~ 232 (1125)
.+.+.+.|++.+|.+.++..+.+|+.|++|.|+-|.|++|- .+..+++|+.|+|..|. |..+.. ..+.++++|+.|+
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHh
Confidence 35567788999999999988889999999999999998885 57889999999999887 666543 1256888899999
Q ss_pred eecCccccccccccccCCCCChhhhCCCCCCCEEEe
Q 001200 233 MGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEI 268 (1125)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l 268 (1125)
+..|..... ...+.....|.-|++|+.|+-
T Consensus 95 L~ENPCc~~------ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 95 LDENPCCGE------AGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hccCCcccc------cchhHHHHHHHHcccchhccC
Confidence 888765411 112344556778888887763
No 70
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.00074 Score=69.45 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=62.0
Q ss_pred EEEeecCCCcccCCCC----CCCCccEEEecCCCCCCCCC--hhhhcCCCCCcEEEeecCCccccCccc-CCCCCCcEEE
Q 001200 90 TIFLHDCKHWEVPEGL----EYPQLEFFCMSPRDHSIKIP--NHVFAGMSNLRGLALSNMQFLSLPSLF-HLPLNLQTLC 162 (1125)
Q Consensus 90 ~L~l~~n~~~~l~~~~----~~~~L~~L~l~~n~~~~~l~--~~~f~~l~~Lr~L~Ls~~~i~~lp~~l-~~l~~Lr~L~ 162 (1125)
-+.+.++.+...-... .++.++.|+|.+|.++ ++. ..++.+|++|++|+++.|.+...-.++ ..+.+||+|-
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV 127 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEE
Confidence 4455555554332221 5677788888887765 333 234577888888888887655322222 3567788888
Q ss_pred ccCCCCC--Cc-ccccCCCCCcEEEccCCCCC
Q 001200 163 LDRCALG--DI-AIIGNLKKLEILSLVDSNIE 191 (1125)
Q Consensus 163 L~~~~l~--~l-~~~~~L~~L~~L~Ls~~~i~ 191 (1125)
|.+..+. .. ..+..++.++.|.++.|++.
T Consensus 128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred EcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 8777755 33 55666777777777766544
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.61 E-value=0.00091 Score=68.26 Aligned_cols=83 Identities=23% Similarity=0.333 Sum_probs=50.2
Q ss_pred cCCCCCcEEEeecC--Ccc-ccCcccCCCCCCcEEEccCCCCCCc---ccccCCCCCcEEEccCCCCCCCch----hhcc
Q 001200 130 AGMSNLRGLALSNM--QFL-SLPSLFHLPLNLQTLCLDRCALGDI---AIIGNLKKLEILSLVDSNIEQLPE----EMAQ 199 (1125)
Q Consensus 130 ~~l~~Lr~L~Ls~~--~i~-~lp~~l~~l~~Lr~L~L~~~~l~~l---~~~~~L~~L~~L~Ls~~~i~~lp~----~i~~ 199 (1125)
..+++|+.|.++.| ++. .++-....+++|++|++++|+|+.+ ..+..+.+|..||+.+|..+.+-. -|.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 34556666666666 222 2333333447777777777776544 455566777777887776665532 3566
Q ss_pred CCCCCEEeecCCC
Q 001200 200 LTQLRLFDLSGCS 212 (1125)
Q Consensus 200 L~~L~~L~L~~~~ 212 (1125)
+++|.+|+-....
T Consensus 142 l~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 142 LPSLKYLDGCDVD 154 (260)
T ss_pred hhhhccccccccC
Confidence 7888888766554
No 72
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.42 E-value=0.0019 Score=65.95 Aligned_cols=108 Identities=26% Similarity=0.293 Sum_probs=57.4
Q ss_pred CCCCCcEEEccCCCCCCcccccCCCCCcEEEccCC--CCC-CCchhhccCCCCCEEeecCCCCCC---ccCccccCCCCC
Q 001200 154 LPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDS--NIE-QLPEEMAQLTQLRLFDLSGCSKLK---VIPPNLLSGLSR 227 (1125)
Q Consensus 154 ~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~Ls~~--~i~-~lp~~i~~L~~L~~L~L~~~~~l~---~ip~~~l~~L~~ 227 (1125)
.+..|+.|.+.++.++.+..+-.|++|++|+++.| .+. .++....++.+|++|++++|+ ++ .++. +..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~p--l~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRP--LKELEN 117 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccch--hhhhcc
Confidence 34455555555555555566666666666666666 222 344344455666666666665 33 2332 345555
Q ss_pred ccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCC
Q 001200 228 LEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (1125)
Q Consensus 228 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 272 (1125)
|..|++.+|.... -.+..-..+.-+++|.+|+-....
T Consensus 118 L~~Ldl~n~~~~~--------l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN--------LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhhcccCCccc--------cccHHHHHHHHhhhhccccccccC
Confidence 6666666655441 112233345556666666654433
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.18 E-value=0.012 Score=55.77 Aligned_cols=39 Identities=18% Similarity=0.369 Sum_probs=13.7
Q ss_pred CChhhhcCCCCCcEEEeecCCccccC-cccCCCCCCcEEEc
Q 001200 124 IPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCL 163 (1125)
Q Consensus 124 l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~L 163 (1125)
+....|.++++|+.+.+.++ +..++ .+|..+.+|+.+.+
T Consensus 26 I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 26 IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred eChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence 44444444444444444432 33332 23334434444444
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.95 E-value=0.02 Score=54.26 Aligned_cols=107 Identities=21% Similarity=0.348 Sum_probs=68.0
Q ss_pred CCChhhhcCCCCCcEEEeecCCccccC-cccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCCch-hhc
Q 001200 123 KIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMA 198 (1125)
Q Consensus 123 ~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~-~i~ 198 (1125)
.++..+|.++++|+.+.+.. .+..++ .+|..+.+|+.+.+.++ +..+ ..+.++.+|+.+.+.. .+..++. .+.
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 35677889999999999875 577774 56888889999999875 6666 6688888899999976 5666654 567
Q ss_pred cCCCCCEEeecCCCCCCccCccccCCCCCccEEEeec
Q 001200 199 QLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGN 235 (1125)
Q Consensus 199 ~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~ 235 (1125)
.+.+|+.+.+..+ +..++...+.+. +|+.+.+..
T Consensus 79 ~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 7889999988653 677777777787 888888764
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.15 E-value=0.0065 Score=36.94 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=12.3
Q ss_pred CCcEEEccCCCCCCCchhhcc
Q 001200 179 KLEILSLVDSNIEQLPEEMAQ 199 (1125)
Q Consensus 179 ~L~~L~Ls~~~i~~lp~~i~~ 199 (1125)
+|++||+++|+++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655544
No 76
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.10 E-value=0.0097 Score=60.71 Aligned_cols=108 Identities=21% Similarity=0.293 Sum_probs=53.2
Q ss_pred hcCCCCCcEEEeecCCcc-ccC----cccCCCCCCcEEEccCCCCCCc--cc-------------ccCCCCCcEEEccCC
Q 001200 129 FAGMSNLRGLALSNMQFL-SLP----SLFHLPLNLQTLCLDRCALGDI--AI-------------IGNLKKLEILSLVDS 188 (1125)
Q Consensus 129 f~~l~~Lr~L~Ls~~~i~-~lp----~~l~~l~~Lr~L~L~~~~l~~l--~~-------------~~~L~~L~~L~Ls~~ 188 (1125)
+-++++|+..+||.|.+. ..| +.|+.-+.|.+|.+++|.+..+ .- ..+-+.|++.+..+|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 345666666666666554 122 2345556666666666655422 11 123355666666666
Q ss_pred CCCCCchh-----hccCCCCCEEeecCCCCCCccCccc-------cCCCCCccEEEeecCccc
Q 001200 189 NIEQLPEE-----MAQLTQLRLFDLSGCSKLKVIPPNL-------LSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 189 ~i~~lp~~-----i~~L~~L~~L~L~~~~~l~~ip~~~-------l~~L~~L~~L~l~~~~~~ 239 (1125)
++...|.. +..-.+|+++.+..|. ++ |.++ +..+.+|+.|++.+|.++
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNg-Ir--pegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNG-IR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecC-cC--cchhHHHHHHHHHHhCcceeeeccccchh
Confidence 55544432 2222355555555554 32 1110 234455555565555544
No 77
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=0.0013 Score=67.10 Aligned_cols=78 Identities=21% Similarity=0.191 Sum_probs=44.1
Q ss_pred CCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCc---ccccCCCCCcEE
Q 001200 107 YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI---AIIGNLKKLEIL 183 (1125)
Q Consensus 107 ~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l---~~~~~L~~L~~L 183 (1125)
+.+.+.|++-++.+. +| +++.+|+.|++|.||-|.|+.+. .+..+++|+.|+|..|.|.++ .-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 345555666665544 22 34566666666666666666653 355666666666666665544 334445555555
Q ss_pred EccCC
Q 001200 184 SLVDS 188 (1125)
Q Consensus 184 ~Ls~~ 188 (1125)
-|..|
T Consensus 94 WL~EN 98 (388)
T KOG2123|consen 94 WLDEN 98 (388)
T ss_pred hhccC
Confidence 55444
No 78
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.35 E-value=0.019 Score=34.90 Aligned_cols=21 Identities=43% Similarity=0.480 Sum_probs=14.7
Q ss_pred CCcEEEeecCCccccCcccCC
Q 001200 134 NLRGLALSNMQFLSLPSLFHL 154 (1125)
Q Consensus 134 ~Lr~L~Ls~~~i~~lp~~l~~ 154 (1125)
+|++|++++|.++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766554
No 79
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=93.93 E-value=0.12 Score=62.62 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=56.6
Q ss_pred eEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cC-HHHHHHHHHHhcCceEE
Q 001200 1030 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---ID-AVPVVRKLRKQLCATEL 1093 (1125)
Q Consensus 1030 ~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d-~~~~~~~l~k~~~~~~~ 1093 (1125)
.++.+.|. |||..|..+|. ++.+++||+.+.++....+++|..+ .+ +.++..++++.++.+..
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 45678888 99999999999 9999999999999999999999875 56 78999999999997765
No 80
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=93.82 E-value=0.39 Score=38.01 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=48.2
Q ss_pred eEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcC
Q 001200 1030 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLC 1089 (1125)
Q Consensus 1030 ~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~ 1089 (1125)
.++.++|+ ++|..|...+.+.+...+||..+.++...++++|..+ .+...+...+...+.
T Consensus 2 ~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 65 (68)
T TIGR00003 2 QKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGY 65 (68)
T ss_pred cEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 34668887 9999999999999999999999999999998887642 566666666655443
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.03 E-value=0.012 Score=57.70 Aligned_cols=43 Identities=12% Similarity=0.235 Sum_probs=22.2
Q ss_pred CCCCcEEEEecCCCccccCCchhhhhccCCcEEEEeccccccc
Q 001200 556 SQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLES 598 (1125)
Q Consensus 556 l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 598 (1125)
+++++.|.+.+|..+.+.-...+.+-.++|+.|+|++|+.|++
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 5566666666666555532111222335566666666665554
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.50 E-value=0.025 Score=55.60 Aligned_cols=69 Identities=17% Similarity=0.255 Sum_probs=46.5
Q ss_pred cccccccceeecccccccceeccCccCcccccCccEEEeccCCCcCcccchhhhccCCcccEEeccccccc
Q 001200 376 YNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNM 446 (1125)
Q Consensus 376 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 446 (1125)
...++.++.|.+.+|.++.+|+..-... .+++|+.|+|++|+++++-.- ..+..+++|+.|.|.+.+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchhh
Confidence 3455667777788888887776554433 677888888888888776422 34566777777777665443
No 83
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.16 E-value=0.088 Score=29.61 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=5.7
Q ss_pred CCcEEEccCCCCCCCc
Q 001200 179 KLEILSLVDSNIEQLP 194 (1125)
Q Consensus 179 ~L~~L~Ls~~~i~~lp 194 (1125)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444444444444443
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.80 E-value=0.0044 Score=61.63 Aligned_cols=84 Identities=15% Similarity=0.058 Sum_probs=48.1
Q ss_pred cCCCCCCcEEEccCCCCCCc-ccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccE
Q 001200 152 FHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLED 230 (1125)
Q Consensus 152 l~~l~~Lr~L~L~~~~l~~l-~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~ 230 (1125)
+.....-.+||++.|++..+ ..|..++.|..||++.|.+..+|..++.+..++++++..|. ....|.. ++.++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s-~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKS-QKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcc-ccccCCcch
Confidence 34444555555555554444 44555555666666666666666666666666666665555 5556655 566666666
Q ss_pred EEeecCc
Q 001200 231 LYMGNTS 237 (1125)
Q Consensus 231 L~l~~~~ 237 (1125)
++..++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 6555543
No 85
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.06 E-value=0.13 Score=28.86 Aligned_cols=16 Identities=63% Similarity=0.810 Sum_probs=6.5
Q ss_pred CCcEEEeecCCccccC
Q 001200 134 NLRGLALSNMQFLSLP 149 (1125)
Q Consensus 134 ~Lr~L~Ls~~~i~~lp 149 (1125)
+|++|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 86
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=90.37 E-value=1.7 Score=37.09 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=46.8
Q ss_pred ceEEEEEEEecchhHHHHHHhhhcCCCCeeEE-----EeeCCCC--eEEEEEe-cCHHHHHHHHHHhcC
Q 001200 1029 KQKAVLKLEIHGEKARQKAFSIVSKFTGVLSI-----LFDPKDK--KMIVIGD-IDAVPVVRKLRKQLC 1089 (1125)
Q Consensus 1029 ~~~~~~kv~~~c~~c~~~~~~~~~~~~gv~~~-----~~~~~~~--~~~v~g~-~d~~~~~~~l~k~~~ 1089 (1125)
.+.+||-|-..-+--.-.+.+++++++||+.| ++|.+.. ++||.|+ +|-+++.+.+.+.|+
T Consensus 4 irRlVLDVlKP~~p~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg 72 (95)
T PF02680_consen 4 IRRLVLDVLKPHEPSIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGG 72 (95)
T ss_dssp EEEEEEEEEEESSS-HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-
T ss_pred eeEEEEEeecCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCC
Confidence 35678888877666677888999999998875 4555555 6999999 999999999999886
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.99 E-value=0.012 Score=58.55 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=43.5
Q ss_pred CCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCc-ccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecC
Q 001200 132 MSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSG 210 (1125)
Q Consensus 132 l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l-~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 210 (1125)
.+..++||++.|++-.+-..|+.++.|..|+++.|.+..+ ..++.+..++.+++..|+.+.+|.+++++++++++++.+
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhcc
Confidence 3444445555444444444444444455555554444433 445555555555555556666666666666666666665
Q ss_pred CC
Q 001200 211 CS 212 (1125)
Q Consensus 211 ~~ 212 (1125)
+.
T Consensus 121 ~~ 122 (326)
T KOG0473|consen 121 TE 122 (326)
T ss_pred Cc
Confidence 54
No 88
>PRK10671 copA copper exporting ATPase; Provisional
Probab=87.30 E-value=1.1 Score=57.11 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=54.7
Q ss_pred EEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEecCHHHHHHHHHHhcCceE
Q 001200 1031 KAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATE 1092 (1125)
Q Consensus 1031 ~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d~~~~~~~l~k~~~~~~ 1092 (1125)
++.+.+. |+|..|...+.+.+.+++||.++.++...+++.|.+..++.++.+.+++.++.+.
T Consensus 100 ~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~Gy~a~ 162 (834)
T PRK10671 100 SQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAE 162 (834)
T ss_pred eEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHHhcCCCcc
Confidence 5677787 9999999999999999999999999999999888877888888888888776654
No 89
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=86.95 E-value=1.7 Score=52.88 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=59.7
Q ss_pred eEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCceEEEec
Q 001200 1030 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELVSI 1096 (1125)
Q Consensus 1030 ~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~~~ 1096 (1125)
++++++|. |.|+.|..++.+++.+++||+++.+|...+++.|+=+ .-|-++.+.+...+..+.+...
T Consensus 146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~~~ 216 (951)
T KOG0207|consen 146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASVRPY 216 (951)
T ss_pred CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccceeeec
Confidence 67899998 9999999999999999999999999999999888765 6778899999887888777653
No 90
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.45 E-value=0.65 Score=29.47 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=9.6
Q ss_pred CCCcEEEccCCCCCCCch
Q 001200 178 KKLEILSLVDSNIEQLPE 195 (1125)
Q Consensus 178 ~~L~~L~Ls~~~i~~lp~ 195 (1125)
.+|++|+|++|.|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555554
No 91
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.45 E-value=0.65 Score=29.47 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=9.6
Q ss_pred CCCcEEEccCCCCCCCch
Q 001200 178 KKLEILSLVDSNIEQLPE 195 (1125)
Q Consensus 178 ~~L~~L~Ls~~~i~~lp~ 195 (1125)
.+|++|+|++|.|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555554
No 92
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.18 E-value=0.58 Score=29.68 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=18.7
Q ss_pred CCCCCEEeecCCCCCCccCccccC
Q 001200 200 LTQLRLFDLSGCSKLKVIPPNLLS 223 (1125)
Q Consensus 200 L~~L~~L~L~~~~~l~~ip~~~l~ 223 (1125)
|++|++|+|++|. +..+|.+++.
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHcc
Confidence 5688999999998 9999887543
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.18 E-value=0.58 Score=29.68 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=18.7
Q ss_pred CCCCCEEeecCCCCCCccCccccC
Q 001200 200 LTQLRLFDLSGCSKLKVIPPNLLS 223 (1125)
Q Consensus 200 L~~L~~L~L~~~~~l~~ip~~~l~ 223 (1125)
|++|++|+|++|. +..+|.+++.
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHcc
Confidence 5688999999998 9999887543
No 94
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=81.67 E-value=6.6 Score=49.21 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=48.6
Q ss_pred ceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEecC-HHHHHHHHHHhcCce
Q 001200 1029 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDID-AVPVVRKLRKQLCAT 1091 (1125)
Q Consensus 1029 ~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d-~~~~~~~l~k~~~~~ 1091 (1125)
.+++.+++. |+|..|..++.+++.+.+||.++.++...++++|..+.+ ..++.+.+++.++.+
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~~Gy~a 116 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQKAGFSL 116 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHhccccc
Confidence 345678887 999999999999999999999999999998877764321 145556666656544
No 95
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=73.33 E-value=0.049 Score=63.35 Aligned_cols=177 Identities=20% Similarity=0.157 Sum_probs=88.2
Q ss_pred CCEEEeecCCCcccCC-----CC-CCCCccEEEecCCCCCCCCCh---hhhcCC-CCCcEEEeecCCcc-----ccCccc
Q 001200 88 CPTIFLHDCKHWEVPE-----GL-EYPQLEFFCMSPRDHSIKIPN---HVFAGM-SNLRGLALSNMQFL-----SLPSLF 152 (1125)
Q Consensus 88 l~~L~l~~n~~~~l~~-----~~-~~~~L~~L~l~~n~~~~~l~~---~~f~~l-~~Lr~L~Ls~~~i~-----~lp~~l 152 (1125)
++++.+.+|.+..-.. .+ ....|..|++.+|.+...--. ..+... ..|++|++..|.+. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6677777776653221 11 456677777777665411000 111221 34566666666554 234455
Q ss_pred CCCCCCcEEEccCCCCCC-----c-ccc----cCCCCCcEEEccCCCCCCC-----chhhccCCC-CCEEeecCCCCCCc
Q 001200 153 HLPLNLQTLCLDRCALGD-----I-AII----GNLKKLEILSLVDSNIEQL-----PEEMAQLTQ-LRLFDLSGCSKLKV 216 (1125)
Q Consensus 153 ~~l~~Lr~L~L~~~~l~~-----l-~~~----~~L~~L~~L~Ls~~~i~~l-----p~~i~~L~~-L~~L~L~~~~~l~~ 216 (1125)
....+|+.++++.|.+.. + ..+ ....++++|++.+|.+..- -..+..... ++.|++..|. +.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cch
Confidence 556677777777776531 1 222 2456667777776655421 122334444 5556666665 332
Q ss_pred c-----CccccCCC-CCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCC
Q 001200 217 I-----PPNLLSGL-SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1125)
Q Consensus 217 i-----p~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 273 (1125)
. .+. +..+ ..++++++..|.+.-. ........+.....++.|.++.|.+
T Consensus 248 ~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~-------~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 248 VGVEKLLPC-LSVLSETLRVLDLSRNSITEK-------GVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHHHHH-hcccchhhhhhhhhcCCcccc-------chHHHHHHHhhhHHHHHhhcccCcc
Confidence 2 111 3334 4556666666665411 0111233344555666666665554
No 96
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=73.32 E-value=5.1 Score=48.89 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=53.4
Q ss_pred EecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEE--ecCHHHHHHHHHHhcCceEEEec
Q 001200 1037 EIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIG--DIDAVPVVRKLRKQLCATELVSI 1096 (1125)
Q Consensus 1037 ~~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g--~~d~~~~~~~l~k~~~~~~~~~~ 1096 (1125)
.|+|..|...+.+++...+||++++++...+..+|.= .++++.+.+.+...|+.+++.+-
T Consensus 2 gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied~gf~~~~~~~ 63 (951)
T KOG0207|consen 2 GMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIEDMGFEASLLSD 63 (951)
T ss_pred CccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhhcccceeeeccc
Confidence 5999999999999999999999999999988755544 39999999999999999998764
No 97
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=70.04 E-value=2.6 Score=26.72 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=13.2
Q ss_pred CCCccEEEEcccCCccc
Q 001200 901 FPSLEDLFVIECPKMKI 917 (1125)
Q Consensus 901 ~~sL~~L~i~~C~~l~~ 917 (1125)
+|.|++|++.+|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 47888888888887753
No 98
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=69.66 E-value=2.9 Score=26.52 Aligned_cols=17 Identities=29% Similarity=0.465 Sum_probs=10.0
Q ss_pred CCccEEeEecCCCcccc
Q 001200 819 KNLTTLELWYCQRLMNL 835 (1125)
Q Consensus 819 ~~L~~L~i~~C~~L~~l 835 (1125)
++|++|+|++|+++++-
T Consensus 2 ~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 2 PNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCEeCCCCCCCcCHH
Confidence 45666666666665543
No 99
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=69.52 E-value=20 Score=30.25 Aligned_cols=61 Identities=18% Similarity=0.157 Sum_probs=42.4
Q ss_pred eEEEEEEEecc-hhHHHHHHhhhcCCCCeeEE-----EeeC--CCCeEEEEEe-cCHHHHHHHHHHhcCc
Q 001200 1030 QKAVLKLEIHG-EKARQKAFSIVSKFTGVLSI-----LFDP--KDKKMIVIGD-IDAVPVVRKLRKQLCA 1090 (1125)
Q Consensus 1030 ~~~~~kv~~~c-~~c~~~~~~~~~~~~gv~~~-----~~~~--~~~~~~v~g~-~d~~~~~~~l~k~~~~ 1090 (1125)
+.+|+-|...- +--.-.+.+.+++++||+.| ++|. .+=++||.|. +|-+++.+.+.+.|+.
T Consensus 6 RRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~ 75 (97)
T COG1888 6 RRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGA 75 (97)
T ss_pred eeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCe
Confidence 44556655333 44445566778888887654 3344 3448999998 9999999999998873
No 100
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=66.34 E-value=35 Score=29.06 Aligned_cols=59 Identities=12% Similarity=0.037 Sum_probs=40.7
Q ss_pred EEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEE---ecCHHHHHHHHHHhcC
Q 001200 1031 KAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIG---DIDAVPVVRKLRKQLC 1089 (1125)
Q Consensus 1031 ~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g---~~d~~~~~~~l~k~~~ 1089 (1125)
++.+.++ ++|..|...+.+.+...+||....++....++.+.- ..++..+...+++.+.
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 86 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGY 86 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3455565 889999999999999999998888887777654431 1355555444444333
No 101
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=58.59 E-value=6.6 Score=24.92 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=11.6
Q ss_pred CCcEEEccCCCCCCCch
Q 001200 179 KLEILSLVDSNIEQLPE 195 (1125)
Q Consensus 179 ~L~~L~Ls~~~i~~lp~ 195 (1125)
+|++|++++|.+++||+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56667777777777764
No 102
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=58.26 E-value=7.9 Score=24.64 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=7.8
Q ss_pred CCCcEEEccCCCCCC
Q 001200 178 KKLEILSLVDSNIEQ 192 (1125)
Q Consensus 178 ~~L~~L~Ls~~~i~~ 192 (1125)
.+|++|++++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 445555555555543
No 103
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=53.39 E-value=0.38 Score=56.15 Aligned_cols=128 Identities=22% Similarity=0.298 Sum_probs=76.8
Q ss_pred ccEEEecCCCCCCCCC---hhhhcCCCCCcEEEeecCCccc-----cCcccCCC-CCCcEEEccCCCCCCc------ccc
Q 001200 110 LEFFCMSPRDHSIKIP---NHVFAGMSNLRGLALSNMQFLS-----LPSLFHLP-LNLQTLCLDRCALGDI------AII 174 (1125)
Q Consensus 110 L~~L~l~~n~~~~~l~---~~~f~~l~~Lr~L~Ls~~~i~~-----lp~~l~~l-~~Lr~L~L~~~~l~~l------~~~ 174 (1125)
+..|.|.+|.+...-. ...+.....|..|++++|.+.. +-..+... ..|++|++..|.+... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7778888877653211 2345677788888888887762 11223333 5677888888876632 556
Q ss_pred cCCCCCcEEEccCCCCCC-----Cchhhc----cCCCCCEEeecCCCCCCccC----ccccCCCCC-ccEEEeecCcc
Q 001200 175 GNLKKLEILSLVDSNIEQ-----LPEEMA----QLTQLRLFDLSGCSKLKVIP----PNLLSGLSR-LEDLYMGNTSV 238 (1125)
Q Consensus 175 ~~L~~L~~L~Ls~~~i~~-----lp~~i~----~L~~L~~L~L~~~~~l~~ip----~~~l~~L~~-L~~L~l~~~~~ 238 (1125)
....+|+.+|++.|.+.. ++..+. ...++++|++++|. +.... ..++...+. +..|++..|.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 678888888888886531 233333 46677777777776 33111 111334444 55566665554
No 104
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=45.73 E-value=73 Score=27.43 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=31.2
Q ss_pred HHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe-cCHHHHHHHHHH
Q 001200 1044 RQKAFSIVSKFTGVLSILFDPKDKKMIVIGD-IDAVPVVRKLRK 1086 (1125)
Q Consensus 1044 ~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~-~d~~~~~~~l~k 1086 (1125)
...+.+.+..+||++=-..|.+.+|++|+=+ -+...+.+++++
T Consensus 19 ~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~~~~~~~~~i~~ 62 (87)
T PRK10553 19 ISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIES 62 (87)
T ss_pred HHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeCChHHHHHHHHH
Confidence 5889999999999999999988887555443 444545555543
No 105
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=42.44 E-value=33 Score=28.21 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=24.4
Q ss_pred eEEEEEEEecchhHH------HHHHhhhcCCCCeeEEEe
Q 001200 1030 QKAVLKLEIHGEKAR------QKAFSIVSKFTGVLSILF 1062 (1125)
Q Consensus 1030 ~~~~~kv~~~c~~c~------~~~~~~~~~~~gv~~~~~ 1062 (1125)
.+|.+.+.+...+|. +++.+++..++||.+|++
T Consensus 34 ~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 34 GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 567777777766665 889999999999999975
No 106
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=39.96 E-value=16 Score=22.44 Aligned_cols=13 Identities=38% Similarity=0.577 Sum_probs=5.7
Q ss_pred CCCcEEEccCCCC
Q 001200 178 KKLEILSLVDSNI 190 (1125)
Q Consensus 178 ~~L~~L~Ls~~~i 190 (1125)
++|++|+|++|.|
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3455555555544
No 107
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=38.21 E-value=84 Score=26.62 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=32.7
Q ss_pred hcCCCCeeEEEeeCCC-CeEEEEEecCHHHHHHHHHHhcC
Q 001200 1051 VSKFTGVLSILFDPKD-KKMIVIGDIDAVPVVRKLRKQLC 1089 (1125)
Q Consensus 1051 ~~~~~gv~~~~~~~~~-~~~~v~g~~d~~~~~~~l~k~~~ 1089 (1125)
+..++||.++..+... =.+.|.+..++.++++.+...+.
T Consensus 26 l~~~~~v~~v~~~~~~~~~i~l~~~~~~~~ll~~l~~~g~ 65 (84)
T PF13732_consen 26 LEELPGVESVEQDGDGKLRIKLEDEETANELLQELIEKGI 65 (84)
T ss_pred HhhCCCeEEEEEeCCcEEEEEECCcccHHHHHHHHHhCCC
Confidence 7788999999987655 36888888899999999998776
No 108
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.08 E-value=44 Score=28.36 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=28.6
Q ss_pred hhhcCCCCeeEEEeeCCCCeEEEEEe-----cCHHHHHHHHHH
Q 001200 1049 SIVSKFTGVLSILFDPKDKKMIVIGD-----IDAVPVVRKLRK 1086 (1125)
Q Consensus 1049 ~~~~~~~gv~~~~~~~~~~~~~v~g~-----~d~~~~~~~l~k 1086 (1125)
+.+...||++.|++.++++++.|.|. .+.-+.++...+
T Consensus 34 ~ivas~pgis~ieik~E~kkL~v~t~~~~~d~~~l~~~ktynd 76 (96)
T COG4004 34 RIVASSPGISRIEIKPENKKLLVNTTDYTDDETKLQTAKTYND 76 (96)
T ss_pred EEEEecCCceEEEEecccceEEEecccccCchhHHHHHHHHHH
Confidence 56788999999999999999999882 444444444444
No 109
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=35.45 E-value=30 Score=22.38 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=6.2
Q ss_pred CCcEEEccCCCC
Q 001200 157 NLQTLCLDRCAL 168 (1125)
Q Consensus 157 ~Lr~L~L~~~~l 168 (1125)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555544
No 110
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=35.08 E-value=34 Score=28.94 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=25.4
Q ss_pred HHhhhcCCCCeeEEEeeCCCCeEEEEEecCHHHHHHHHH
Q 001200 1047 AFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLR 1085 (1125)
Q Consensus 1047 ~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d~~~~~~~l~ 1085 (1125)
.|+.+.+++=--...+.--.-++|+...|.-++|++++.
T Consensus 52 tmrhleklkipyefqygwlgvkitiksnvpndevtkkvs 90 (138)
T PF05663_consen 52 TMRHLEKLKIPYEFQYGWLGVKITIKSNVPNDEVTKKVS 90 (138)
T ss_pred HHHHHHhcCCCeeeeecceeEEEEEecCCCchHhhhccC
Confidence 456666665444444444444788888888888887654
No 111
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=34.30 E-value=1.7e+02 Score=24.71 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=32.8
Q ss_pred HHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe-cCHHHHHHHHHHhcC
Q 001200 1044 RQKAFSIVSKFTGVLSILFDPKDKKMIVIGD-IDAVPVVRKLRKQLC 1089 (1125)
Q Consensus 1044 ~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~-~d~~~~~~~l~k~~~ 1089 (1125)
...+.+++..+|||+=-..|.+ +|++|+=+ -+...+.+.+++.-.
T Consensus 17 ~~~v~~~l~~~~gvEVh~~~~~-GKiVVtiE~~~~~~~~~~~~~i~~ 62 (79)
T PF03927_consen 17 LEEVAEALAAIPGVEVHAVDED-GKIVVTIEAESSEEEVDLIDAINA 62 (79)
T ss_dssp HHHHHHHHCCSTTEEEEEEETT-TEEEEEEEESSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCcEEEeeCCC-CeEEEEEEeCChHHHHHHHHHHHc
Confidence 5789999999999977677777 66555444 666777777776443
No 112
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=31.27 E-value=1.8e+02 Score=20.14 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=34.0
Q ss_pred EecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe--cCHHHHHHHHH
Q 001200 1037 EIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD--IDAVPVVRKLR 1085 (1125)
Q Consensus 1037 ~~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~--~d~~~~~~~l~ 1085 (1125)
.++|..|...+.......+|+....++.....+.+... .++..+...++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (63)
T cd00371 6 GMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIE 56 (63)
T ss_pred CeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHH
Confidence 47899999999988888999887777766666555543 24544443433
No 113
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=30.32 E-value=1.1e+02 Score=25.56 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=27.8
Q ss_pred eEEEEEEEecchhHHHHHHhhhcCCCCeeEEE
Q 001200 1030 QKAVLKLEIHGEKARQKAFSIVSKFTGVLSIL 1061 (1125)
Q Consensus 1030 ~~~~~kv~~~c~~c~~~~~~~~~~~~gv~~~~ 1061 (1125)
-.+.+.|....-.=-..+++.|.+++||.+|+
T Consensus 48 ~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 48 ARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 45678888888888899999999999999985
No 114
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.38 E-value=1.1e+02 Score=25.20 Aligned_cols=33 Identities=6% Similarity=0.175 Sum_probs=26.2
Q ss_pred eEEEEEEEecchh-HHHHHHhhhcCCCCeeEEEe
Q 001200 1030 QKAVLKLEIHGEK-ARQKAFSIVSKFTGVLSILF 1062 (1125)
Q Consensus 1030 ~~~~~kv~~~c~~-c~~~~~~~~~~~~gv~~~~~ 1062 (1125)
..+.+.+...... --.++++++.+++||.+|.+
T Consensus 41 ~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 41 ANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 3455666666665 77999999999999999875
No 115
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=27.64 E-value=1.6e+02 Score=24.92 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=30.1
Q ss_pred eEEEEEEEecchhHHHHHHhhhcCCCCeeEEEe
Q 001200 1030 QKAVLKLEIHGEKARQKAFSIVSKFTGVLSILF 1062 (1125)
Q Consensus 1030 ~~~~~kv~~~c~~c~~~~~~~~~~~~gv~~~~~ 1062 (1125)
-|+|+-+.-...+-..+..+++..+|||-++.+
T Consensus 39 GKiVVtiE~~~~~~~~~~~~~i~~l~GVlsa~l 71 (79)
T PF03927_consen 39 GKIVVTIEAESSEEEVDLIDAINALPGVLSASL 71 (79)
T ss_dssp TEEEEEEEESSHHHHHHHHHHHCCSTTEEEEEE
T ss_pred CeEEEEEEeCChHHHHHHHHHHHcCCCceEEEE
Confidence 678889998999999999999999999999876
No 116
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=27.17 E-value=51 Score=26.19 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=20.1
Q ss_pred HHHHhhhcC---CCCeeEEEeeCCCCeEEEEEecCHHHHHHHH
Q 001200 1045 QKAFSIVSK---FTGVLSILFDPKDKKMIVIGDIDAVPVVRKL 1084 (1125)
Q Consensus 1045 ~~~~~~~~~---~~gv~~~~~~~~~~~~~v~g~~d~~~~~~~l 1084 (1125)
.+|+++|.. +++- .|.+...++.|+++|.|+-.+-.+++
T Consensus 2 ~~v~~~L~~~~~~~~~-~i~v~v~~g~v~L~G~v~s~~~~~~a 43 (64)
T PF04972_consen 2 TKVRAALRADPWLPDS-NISVSVENGVVTLSGEVPSQEQRDAA 43 (64)
T ss_dssp -----------CTT-T-TEEEEEECTEEEEEEEESSCHHHHHH
T ss_pred cccccccccccccCCC-eEEEEEECCEEEEEeeCcHHHHHHhH
Confidence 356666666 3444 57888889999999998544433333
No 117
>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]
Probab=22.94 E-value=1.4e+02 Score=30.61 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=26.1
Q ss_pred HHHHHhhhcCCCCeeEEEe--eCCCCe--EEEEEecCHHHHHHHHH
Q 001200 1044 RQKAFSIVSKFTGVLSILF--DPKDKK--MIVIGDIDAVPVVRKLR 1085 (1125)
Q Consensus 1044 ~~~~~~~~~~~~gv~~~~~--~~~~~~--~~v~g~~d~~~~~~~l~ 1085 (1125)
..++..+..++|+|.-+++ |...++ +|++| ||.+++++.-
T Consensus 20 ie~i~a~~~~~~~v~ildve~danhNRsViT~vg--dp~~~~~A~f 63 (302)
T COG3643 20 IEKIVAAAKSIPTVKILDVEMDANHNRSVITLVG--DPSKVVNAAF 63 (302)
T ss_pred HHHHHHHHhcCCceEEEEeccCCCCCceEEEEec--ChHHHHHHHH
Confidence 3677778888999876555 444554 77788 5666555543
No 118
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=22.49 E-value=1.4e+02 Score=28.43 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=31.8
Q ss_pred ceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCC-CCeEEE
Q 001200 1029 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPK-DKKMIV 1071 (1125)
Q Consensus 1029 ~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~-~~~~~v 1071 (1125)
.+.+++.|+ -.|..|+..+.....++ |+++++|-.. .+++++
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~l-Gl~~L~I~~~~sG~~~~ 142 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEKL-GLKSLTIHEPDSGKVYY 142 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHHc-CCCeEEEEecCCCcEEE
Confidence 578899998 88999996666655554 9999888777 665543
No 119
>PRK13748 putative mercuric reductase; Provisional
Probab=21.85 E-value=2.4e+02 Score=34.24 Aligned_cols=59 Identities=10% Similarity=0.021 Sum_probs=44.3
Q ss_pred EEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEE--ecCHHHHHHHHHHhcCceE
Q 001200 1034 LKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIG--DIDAVPVVRKLRKQLCATE 1092 (1125)
Q Consensus 1034 ~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g--~~d~~~~~~~l~k~~~~~~ 1092 (1125)
+.+. ++|..|..++.+.+...+||....++...+.+.+.. ..++..+...+...+..++
T Consensus 4 i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~~g~~~~ 65 (561)
T PRK13748 4 LKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAGLGYRAT 65 (561)
T ss_pred EEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCeee
Confidence 4454 899999999999999999999999998888876663 2456666666665454443
No 120
>KOG3411 consensus 40S ribosomal protein S19 [Translation, ribosomal structure and biogenesis]
Probab=21.21 E-value=66 Score=29.42 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=31.8
Q ss_pred hHHHHHHhhhcCCCCeeEEEeeCCCC-eEEEEEecCHHHHHHHHHHh
Q 001200 1042 KARQKAFSIVSKFTGVLSILFDPKDK-KMIVIGDIDAVPVVRKLRKQ 1087 (1125)
Q Consensus 1042 ~c~~~~~~~~~~~~gv~~~~~~~~~~-~~~v~g~~d~~~~~~~l~k~ 1087 (1125)
+|.+||..+|.+ +.-|+.+++.+ ++|=.|.=|.+.++.+++.+
T Consensus 98 ~i~rkvlQ~Le~---~~~ve~hp~gGR~lt~~GqrdldrIa~~i~~~ 141 (143)
T KOG3411|consen 98 GIARKVLQALEK---MGIVEKHPKGGRRLTEQGQRDLDRIAGQIREE 141 (143)
T ss_pred HHHHHHHHHHHh---CCceeeCCCCcceeCcccchhHHHHHHHHHhc
Confidence 466666666554 45566777776 69999999999999998853
No 121
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=21.13 E-value=4.3e+02 Score=21.89 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=30.9
Q ss_pred HHHhhhcCCCCeeEEEeeCCCCeEEEEEe--cCHHHHHHHHHHhcC
Q 001200 1046 KAFSIVSKFTGVLSILFDPKDKKMIVIGD--IDAVPVVRKLRKQLC 1089 (1125)
Q Consensus 1046 ~~~~~~~~~~gv~~~~~~~~~~~~~v~g~--~d~~~~~~~l~k~~~ 1089 (1125)
++.+.+..-+---.+..|.+++.++|.|. +--+-++++|+++++
T Consensus 23 ~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~ 68 (75)
T PF14492_consen 23 EALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFG 68 (75)
T ss_dssp HHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHC
Confidence 33444444455567889999998887765 777889999998765
No 122
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the metallo-beta-lactamase fold. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH domains are known to bind single-stranded RNA or DNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=20.60 E-value=4.9e+02 Score=24.89 Aligned_cols=71 Identities=21% Similarity=0.386 Sum_probs=47.4
Q ss_pred cceEEEEEEE----ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe-----c-CHHHHHHHHHHhcC-ceEEEec
Q 001200 1028 TKQKAVLKLE----IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD-----I-DAVPVVRKLRKQLC-ATELVSI 1096 (1125)
Q Consensus 1028 ~~~~~~~kv~----~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~-----~-d~~~~~~~l~k~~~-~~~~~~~ 1096 (1125)
-.+.|+++.+ +.=+.-++.|++++-+=.||+++.+|...+.|++.-+ + -....+..+.++.+ .+.++..
T Consensus 35 lrKRIvvR~dps~l~~~e~A~~~I~~ivP~ea~i~di~Fd~~tGEV~IeaeKPG~ViGk~g~~~reI~~~tgW~p~vvRt 114 (145)
T cd02410 35 LRKRIVIRPDPSVLKPPEEAIKIILEIVPEEAGITDIYFDDDTGEVIIEAEKPGLVIGKGGSTLREITRETGWAPKVVRT 114 (145)
T ss_pred HhceEEEcCChhhcCCHHHHHHHHHHhCCCccCceeeEecCCCcEEEEEEcCCeEEEecCchhHHHHHHHhCCeeEEEec
Confidence 3577888887 3334445666666655569999999999999988654 1 23445566665555 7777765
Q ss_pred CC
Q 001200 1097 GP 1098 (1125)
Q Consensus 1097 ~~ 1098 (1125)
.|
T Consensus 115 pP 116 (145)
T cd02410 115 PP 116 (145)
T ss_pred CC
Confidence 44
Done!