Query 001200
Match_columns 1125
No_of_seqs 750 out of 6148
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 16:07:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.5E-40 8.5E-45 415.5 31.6 679 109-944 51-760 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.5E-38 1.9E-42 394.2 34.2 655 86-891 50-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.9E-36 6.4E-41 377.4 42.5 176 89-278 7-188 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2E-35 6.8E-40 368.1 43.0 556 71-776 11-593 (680)
5 3t6q_A CD180 antigen; protein- 100.0 4.1E-34 1.4E-38 351.4 39.7 179 88-280 14-198 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 9.3E-35 3.2E-39 357.1 32.7 181 88-280 13-200 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-33 4.4E-38 347.0 34.8 190 69-273 16-216 (606)
8 3t6q_A CD180 antigen; protein- 100.0 7.7E-33 2.6E-37 340.0 37.7 531 110-778 14-558 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 9.2E-31 3.2E-35 332.1 40.5 526 71-726 11-559 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-30 5.3E-35 330.0 35.9 171 89-274 7-187 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 5E-31 1.7E-35 321.7 29.7 145 91-239 12-162 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 2E-30 6.7E-35 316.4 33.6 186 72-272 15-211 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 3.2E-30 1.1E-34 312.8 29.4 486 91-653 10-509 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 6.5E-29 2.2E-33 301.3 33.7 220 107-361 4-233 (549)
15 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-28 5.8E-33 303.8 32.6 179 90-280 35-220 (635)
16 2z7x_B TOLL-like receptor 1, v 100.0 2.6E-28 8.9E-33 293.6 27.7 143 89-238 3-150 (520)
17 4g8a_A TOLL-like receptor 4; l 100.0 2E-26 6.8E-31 285.2 39.5 164 73-239 40-214 (635)
18 4ecn_A Leucine-rich repeat pro 99.9 2.6E-27 8.7E-32 293.9 23.1 34 86-119 323-359 (876)
19 4eco_A Uncharacterized protein 99.9 1.5E-27 5.2E-32 292.1 20.5 191 86-291 81-385 (636)
20 2z7x_B TOLL-like receptor 1, v 99.9 7.6E-27 2.6E-31 280.8 23.7 141 111-273 3-150 (520)
21 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.9E-26 2E-30 275.3 28.6 145 87-238 32-181 (562)
22 4eco_A Uncharacterized protein 99.9 1.2E-26 4E-31 284.3 21.7 448 108-655 81-633 (636)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-25 4.1E-30 272.5 30.1 453 106-627 29-509 (562)
24 4ecn_A Leucine-rich repeat pro 99.9 4E-26 1.4E-30 283.2 22.3 38 108-146 323-361 (876)
25 1o6v_A Internalin A; bacterial 99.9 6.6E-25 2.2E-29 259.3 26.5 346 85-546 45-390 (466)
26 1o6v_A Internalin A; bacterial 99.9 4.4E-24 1.5E-28 252.2 29.9 347 106-573 44-390 (466)
27 3v47_A TOLL-like receptor 5B a 99.9 4.5E-24 1.6E-28 252.1 28.2 155 84-239 28-193 (455)
28 1jl5_A Outer protein YOPM; leu 99.9 1.1E-24 3.8E-29 254.5 22.2 150 103-277 6-169 (454)
29 3v47_A TOLL-like receptor 5B a 99.9 3.7E-24 1.3E-28 252.9 24.2 175 89-278 13-197 (455)
30 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-23 3.6E-28 246.5 27.2 264 84-450 40-303 (457)
31 3bz5_A Internalin-J, INLJ; leu 99.9 4.1E-23 1.4E-27 241.5 30.1 315 106-573 40-354 (457)
32 4fmz_A Internalin; leucine ric 99.9 2.9E-23 1E-27 235.5 26.0 172 84-275 42-213 (347)
33 1jl5_A Outer protein YOPM; leu 99.9 5E-24 1.7E-28 249.0 18.2 179 85-290 10-202 (454)
34 4fmz_A Internalin; leucine ric 99.9 6.9E-23 2.4E-27 232.4 27.1 303 106-480 42-344 (347)
35 3o6n_A APL1; leucine-rich repe 99.9 8.8E-23 3E-27 235.4 25.4 303 106-479 43-349 (390)
36 3o6n_A APL1; leucine-rich repe 99.9 1.5E-22 5.2E-27 233.4 25.1 308 131-546 43-354 (390)
37 2id5_A Lingo-1, leucine rich r 99.9 3.1E-22 1E-26 237.7 27.9 176 89-278 14-193 (477)
38 3oja_B Anopheles plasmodium-re 99.9 4.3E-22 1.5E-26 242.5 25.2 282 106-443 49-334 (597)
39 2id5_A Lingo-1, leucine rich r 99.9 1.7E-21 5.7E-26 231.3 27.7 306 71-444 18-331 (477)
40 3oja_B Anopheles plasmodium-re 99.9 9.4E-22 3.2E-26 239.5 25.0 307 131-545 49-359 (597)
41 2ft3_A Biglycan; proteoglycan, 99.9 1E-20 3.4E-25 212.8 20.0 123 109-238 34-159 (332)
42 4fcg_A Uncharacterized protein 99.8 2E-20 6.9E-25 209.1 18.3 174 85-273 80-265 (328)
43 1xku_A Decorin; proteoglycan, 99.8 1.4E-19 4.9E-24 203.2 24.1 148 87-239 32-184 (330)
44 1xku_A Decorin; proteoglycan, 99.8 2.9E-19 9.8E-24 200.8 26.5 230 71-362 38-274 (330)
45 2ft3_A Biglycan; proteoglycan, 99.8 1.8E-19 6.1E-24 202.6 22.3 288 87-444 34-331 (332)
46 4fcg_A Uncharacterized protein 99.8 1.3E-19 4.4E-24 202.5 19.9 130 132-274 80-219 (328)
47 2z80_A TOLL-like receptor 2, v 99.8 1.9E-19 6.5E-24 204.2 21.2 194 89-295 34-234 (353)
48 1ogq_A PGIP-2, polygalacturona 99.8 4.2E-20 1.4E-24 205.2 15.2 242 86-391 50-302 (313)
49 1ozn_A Reticulon 4 receptor; N 99.8 3.1E-19 1.1E-23 195.8 19.3 192 72-277 19-217 (285)
50 3ogk_B Coronatine-insensitive 99.8 8.1E-21 2.8E-25 232.4 7.0 169 405-594 340-524 (592)
51 3zyj_A Leucine-rich repeat-con 99.8 3.5E-19 1.2E-23 208.5 19.8 175 88-277 45-223 (440)
52 3zyi_A Leucine-rich repeat-con 99.8 4.6E-19 1.6E-23 208.3 20.0 176 88-278 56-235 (452)
53 2z66_A Variable lymphocyte rec 99.8 2.4E-19 8.1E-24 199.1 15.0 151 86-239 28-188 (306)
54 1ozn_A Reticulon 4 receptor; N 99.8 1.3E-18 4.6E-23 190.8 20.5 175 88-276 13-192 (285)
55 2z80_A TOLL-like receptor 2, v 99.8 2.4E-18 8.3E-23 195.1 21.3 155 106-276 29-189 (353)
56 1ogq_A PGIP-2, polygalacturona 99.8 3.5E-19 1.2E-23 197.8 12.3 152 108-274 50-210 (313)
57 3zyj_A Leucine-rich repeat-con 99.8 3.2E-18 1.1E-22 200.3 20.5 233 72-362 51-290 (440)
58 3zyi_A Leucine-rich repeat-con 99.8 4.4E-18 1.5E-22 199.9 21.2 232 73-362 63-301 (452)
59 3g06_A SSPH2 (leucine-rich rep 99.8 2.6E-17 8.8E-22 197.8 27.8 255 87-444 41-295 (622)
60 3ogk_B Coronatine-insensitive 99.8 2.7E-19 9.3E-24 218.9 9.5 334 530-911 191-547 (592)
61 2p1m_B Transport inhibitor res 99.8 4.2E-20 1.4E-24 226.2 2.2 129 106-235 103-244 (594)
62 1z7x_W Ribonuclease inhibitor; 99.8 2.2E-20 7.5E-25 220.9 -1.5 158 108-273 3-182 (461)
63 2o6q_A Variable lymphocyte rec 99.8 2E-17 6.7E-22 179.6 21.1 191 87-291 17-213 (270)
64 1p9a_G Platelet glycoprotein I 99.8 1.2E-17 4.1E-22 182.8 19.4 193 84-291 8-203 (290)
65 2o6q_A Variable lymphocyte rec 99.8 3.8E-17 1.3E-21 177.4 22.3 190 71-274 23-218 (270)
66 3o53_A Protein LRIM1, AGAP0063 99.7 2.2E-19 7.6E-24 200.0 3.7 165 106-289 32-197 (317)
67 2z66_A Variable lymphocyte rec 99.7 1.7E-17 5.8E-22 184.1 18.6 238 89-339 10-262 (306)
68 2xwt_C Thyrotropin receptor; s 99.7 2.1E-17 7.1E-22 176.0 16.6 198 76-290 23-233 (239)
69 1h6u_A Internalin H; cell adhe 99.7 5E-17 1.7E-21 179.8 19.5 190 84-294 39-228 (308)
70 2p1m_B Transport inhibitor res 99.7 2E-18 7E-23 211.2 8.2 331 529-911 182-540 (594)
71 1z7x_W Ribonuclease inhibitor; 99.7 2E-19 6.8E-24 212.7 -0.8 151 87-239 4-183 (461)
72 2z62_A TOLL-like receptor 4, v 99.7 5.8E-17 2E-21 176.7 17.9 204 75-293 18-234 (276)
73 3m19_A Variable lymphocyte rec 99.7 8.7E-17 3E-21 172.4 18.9 174 87-274 15-192 (251)
74 2z62_A TOLL-like receptor 4, v 99.7 5.4E-17 1.8E-21 177.0 16.3 218 90-362 11-235 (276)
75 1p9a_G Platelet glycoprotein I 99.7 8.8E-17 3E-21 175.9 17.7 159 106-280 8-167 (290)
76 3g06_A SSPH2 (leucine-rich rep 99.7 1E-15 3.5E-20 183.9 27.1 250 69-390 45-294 (622)
77 1wwl_A Monocyte differentiatio 99.7 3.6E-18 1.2E-22 189.7 4.6 34 325-362 274-307 (312)
78 3o53_A Protein LRIM1, AGAP0063 99.7 3.9E-18 1.3E-22 189.9 4.0 240 85-395 33-277 (317)
79 2xwt_C Thyrotropin receptor; s 99.7 1.5E-16 5E-21 169.4 15.4 171 92-278 17-197 (239)
80 1h6u_A Internalin H; cell adhe 99.7 3.1E-16 1.1E-20 173.4 18.0 187 71-278 48-234 (308)
81 3rfs_A Internalin B, repeat mo 99.7 5.9E-16 2E-20 168.1 19.7 177 83-274 38-218 (272)
82 1h6t_A Internalin B; cell adhe 99.7 3.5E-16 1.2E-20 171.4 17.2 173 84-277 44-216 (291)
83 3oja_A Leucine-rich immune mol 99.7 9.9E-17 3.4E-21 189.2 12.9 150 108-276 34-184 (487)
84 3oja_A Leucine-rich immune mol 99.7 2.2E-17 7.5E-22 194.8 6.6 234 85-389 33-271 (487)
85 3rfs_A Internalin B, repeat mo 99.7 4.1E-16 1.4E-20 169.4 15.2 189 71-279 48-241 (272)
86 3m19_A Variable lymphocyte rec 99.7 2E-15 6.9E-20 161.8 19.4 167 70-239 20-192 (251)
87 4ay9_X Follicle-stimulating ho 99.6 4.1E-15 1.4E-19 167.9 19.2 147 89-237 12-165 (350)
88 3e6j_A Variable lymphocyte rec 99.6 3.7E-15 1.3E-19 156.9 16.9 149 88-239 21-172 (229)
89 4ay9_X Follicle-stimulating ho 99.6 7E-15 2.4E-19 166.0 20.1 197 70-280 15-221 (350)
90 1m9s_A Internalin B; cell inva 99.6 1.4E-15 4.7E-20 182.7 14.6 175 83-278 40-214 (605)
91 2v9t_B SLIT homolog 2 protein 99.6 4.1E-15 1.4E-19 155.4 15.6 148 89-239 14-165 (220)
92 1h6t_A Internalin B; cell adhe 99.6 3.1E-15 1.1E-19 163.8 14.8 179 95-294 33-211 (291)
93 2o6s_A Variable lymphocyte rec 99.6 3.9E-15 1.3E-19 154.5 14.2 170 89-279 10-184 (208)
94 2v70_A SLIT-2, SLIT homolog 2 99.6 7.1E-15 2.4E-19 153.6 15.4 149 89-239 14-166 (220)
95 1wwl_A Monocyte differentiatio 99.6 5.8E-15 2E-19 163.8 14.9 190 85-291 94-304 (312)
96 4glp_A Monocyte differentiatio 99.6 7.3E-16 2.5E-20 171.0 6.7 182 87-280 65-270 (310)
97 4ezg_A Putative uncharacterize 99.6 1.4E-14 4.6E-19 148.8 15.2 149 84-239 42-194 (197)
98 4glp_A Monocyte differentiatio 99.6 7.2E-15 2.5E-19 163.0 13.9 192 86-293 91-304 (310)
99 1xeu_A Internalin C; cellular 99.6 2.1E-15 7.1E-20 162.4 8.7 165 88-274 21-185 (263)
100 2xot_A Amphoterin-induced prot 99.6 9.3E-15 3.2E-19 165.6 13.7 171 89-273 21-201 (361)
101 4ezg_A Putative uncharacterize 99.6 1.4E-14 4.7E-19 148.7 12.4 150 106-274 42-194 (197)
102 2ast_B S-phase kinase-associat 99.5 4.6E-15 1.6E-19 167.0 8.9 103 133-236 70-178 (336)
103 1xeu_A Internalin C; cellular 99.5 2.5E-14 8.7E-19 153.8 14.1 149 82-239 37-185 (263)
104 2v9t_B SLIT homolog 2 protein 99.5 5.4E-14 1.9E-18 146.9 15.4 147 111-273 14-164 (220)
105 3cvr_A Invasion plasmid antige 99.5 1.1E-13 3.8E-18 164.1 18.8 174 87-292 60-239 (571)
106 2o6s_A Variable lymphocyte rec 99.5 5.7E-14 2E-18 145.7 14.4 157 73-239 16-178 (208)
107 2xot_A Amphoterin-induced prot 99.5 3.5E-14 1.2E-18 160.9 13.6 168 69-239 23-202 (361)
108 2ca6_A RAN GTPase-activating p 99.5 1.5E-15 5.1E-20 174.4 2.2 39 153-191 91-135 (386)
109 1m9s_A Internalin B; cell inva 99.5 2.2E-14 7.6E-19 172.2 12.1 183 90-293 25-207 (605)
110 3e6j_A Variable lymphocyte rec 99.5 1.3E-13 4.4E-18 145.1 15.7 148 110-274 21-172 (229)
111 2v70_A SLIT-2, SLIT homolog 2 99.5 1.2E-13 3.9E-18 144.4 15.0 147 111-273 14-165 (220)
112 2ast_B S-phase kinase-associat 99.5 4.4E-15 1.5E-19 167.1 4.6 220 87-361 48-282 (336)
113 3cvr_A Invasion plasmid antige 99.5 5E-13 1.7E-17 158.4 19.1 174 69-275 64-244 (571)
114 2ell_A Acidic leucine-rich nuc 99.5 1.4E-13 4.9E-18 137.2 12.2 138 132-278 23-164 (168)
115 3goz_A Leucine-rich repeat-con 99.5 8.2E-15 2.8E-19 166.4 3.1 128 109-239 23-180 (362)
116 2ca6_A RAN GTPase-activating p 99.4 1.3E-14 4.3E-19 166.7 1.5 125 140-273 16-171 (386)
117 1dce_A Protein (RAB geranylger 99.4 1E-15 3.5E-20 182.8 -8.7 190 84-288 347-565 (567)
118 2ell_A Acidic leucine-rich nuc 99.4 3.6E-13 1.2E-17 134.3 10.7 131 85-219 23-164 (168)
119 2wfh_A SLIT homolog 2 protein 99.4 1.4E-12 4.9E-17 132.7 13.1 123 112-239 14-139 (193)
120 2je0_A Acidic leucine-rich nuc 99.4 4.7E-13 1.6E-17 130.4 8.9 129 132-269 16-148 (149)
121 3goz_A Leucine-rich repeat-con 99.4 1.2E-13 4E-18 156.9 5.1 155 113-276 3-182 (362)
122 2je0_A Acidic leucine-rich nuc 99.4 4.9E-13 1.7E-17 130.3 7.1 120 86-208 17-147 (149)
123 4b8c_D Glucose-repressible alc 99.4 1.1E-12 3.8E-17 161.8 10.7 151 85-239 172-329 (727)
124 1w8a_A SLIT protein; signaling 99.3 3.3E-12 1.1E-16 130.1 11.8 121 89-211 11-136 (192)
125 1w8a_A SLIT protein; signaling 99.3 4E-12 1.4E-16 129.5 12.4 124 111-239 11-139 (192)
126 2wfh_A SLIT homolog 2 protein 99.3 7.3E-12 2.5E-16 127.5 13.8 121 89-212 13-137 (193)
127 1a9n_A U2A', U2A'; complex (nu 99.3 1.7E-12 5.7E-17 130.4 8.8 134 130-273 16-152 (176)
128 1a9n_A U2A', U2A'; complex (nu 99.3 5.8E-13 2E-17 133.8 4.8 130 106-239 17-153 (176)
129 2o6r_A Variable lymphocyte rec 99.3 2.6E-11 8.7E-16 121.9 14.4 105 134-239 29-137 (177)
130 2o6r_A Variable lymphocyte rec 99.3 2.4E-11 8.2E-16 122.1 14.1 123 88-212 9-135 (177)
131 4b8c_D Glucose-repressible alc 99.3 8.1E-13 2.8E-17 163.0 2.9 131 106-239 222-354 (727)
132 1dce_A Protein (RAB geranylger 99.2 3.2E-11 1.1E-15 143.9 12.2 123 134-268 442-567 (567)
133 3sb4_A Hypothetical leucine ri 99.2 8.6E-11 2.9E-15 131.2 13.1 188 85-288 48-326 (329)
134 1ds9_A Outer arm dynein; leuci 99.2 2.4E-13 8.3E-18 139.5 -8.6 109 128-239 43-153 (198)
135 2r9u_A Variable lymphocyte rec 99.1 1.9E-10 6.4E-15 114.7 11.7 101 136-239 15-118 (174)
136 1ds9_A Outer arm dynein; leuci 99.1 4.5E-13 1.6E-17 137.5 -7.7 142 87-232 24-180 (198)
137 3g39_A Variable lymphocyte rec 99.1 2.4E-10 8E-15 113.6 11.5 102 135-239 11-115 (170)
138 3iwl_A Copper transport protei 99.1 1.6E-10 5.4E-15 94.8 8.2 67 1029-1096 1-67 (68)
139 2r9u_A Variable lymphocyte rec 99.1 3.6E-10 1.2E-14 112.7 11.7 80 133-212 33-116 (174)
140 3g39_A Variable lymphocyte rec 99.1 6.3E-10 2.2E-14 110.5 11.5 80 133-212 30-113 (170)
141 1cc8_A Protein (metallochapero 99.0 1.3E-09 4.3E-14 90.9 9.6 68 1028-1095 3-71 (73)
142 3sb4_A Hypothetical leucine ri 99.0 1.2E-09 4.2E-14 121.8 10.7 192 84-290 23-304 (329)
143 2crl_A Copper chaperone for su 98.9 7.2E-09 2.5E-13 91.5 10.8 72 1029-1100 18-89 (98)
144 4a4j_A Pacszia, cation-transpo 98.8 1.5E-08 5.2E-13 83.2 8.7 64 1030-1093 2-68 (69)
145 3dxs_X Copper-transporting ATP 98.8 3.3E-08 1.1E-12 82.5 9.7 67 1029-1095 1-71 (74)
146 2ifg_A High affinity nerve gro 98.7 1.9E-08 6.5E-13 113.1 10.4 100 137-239 12-116 (347)
147 4fdw_A Leucine rich hypothetic 98.7 2.1E-07 7.3E-12 105.8 18.5 252 86-389 113-379 (401)
148 3un9_A NLR family member X1; l 98.7 9.9E-10 3.4E-14 123.8 -1.6 128 85-212 71-222 (372)
149 3fry_A Probable copper-exporti 98.7 2.2E-08 7.6E-13 83.2 6.9 66 1028-1095 3-69 (73)
150 3un9_A NLR family member X1; l 98.7 8.1E-10 2.8E-14 124.5 -2.9 160 107-275 71-253 (372)
151 4fdw_A Leucine rich hypothetic 98.7 2E-07 7E-12 106.0 16.7 184 87-292 158-354 (401)
152 2ifg_A High affinity nerve gro 98.6 6.1E-08 2.1E-12 108.9 10.6 97 113-212 13-114 (347)
153 2xmw_A PACS-N, cation-transpor 98.5 8.3E-07 2.8E-11 73.0 10.2 66 1028-1093 1-69 (71)
154 2roe_A Heavy metal binding pro 98.4 2E-07 6.8E-12 75.6 5.4 61 1033-1093 3-64 (66)
155 2l3m_A Copper-ION-binding prot 98.4 6.1E-07 2.1E-11 73.8 8.4 65 1027-1091 2-70 (71)
156 2k2p_A Uncharacterized protein 98.4 2E-07 6.8E-12 79.7 5.0 65 1027-1091 19-84 (85)
157 2xmm_A SSR2857 protein, ATX1; 98.4 2.8E-07 9.7E-12 74.0 4.9 60 1032-1091 3-63 (64)
158 4fs7_A Uncharacterized protein 98.4 6.1E-06 2.1E-10 94.2 17.7 131 98-236 59-195 (394)
159 1qup_A Superoxide dismutase 1 98.4 8.7E-07 3E-11 90.3 9.4 69 1030-1098 6-74 (222)
160 4fs7_A Uncharacterized protein 98.3 9.7E-06 3.3E-10 92.5 18.4 147 84-237 69-219 (394)
161 1aw0_A Menkes copper-transport 98.3 2.4E-06 8.1E-11 70.4 8.9 64 1030-1093 3-70 (72)
162 1q8l_A Copper-transporting ATP 98.2 1.9E-06 6.4E-11 73.7 7.2 66 1029-1094 8-77 (84)
163 1y3j_A Copper-transporting ATP 98.2 2.7E-06 9.1E-11 71.3 7.9 66 1029-1094 2-71 (77)
164 3cjk_B Copper-transporting ATP 98.2 5.9E-06 2E-10 68.7 10.0 66 1030-1095 2-71 (75)
165 1osd_A MERP, hypothetical prot 98.2 3.3E-06 1.1E-10 69.5 8.3 64 1030-1093 3-70 (72)
166 1jk9_B CCS, copper chaperone f 98.2 2.5E-06 8.7E-11 88.3 8.9 70 1030-1099 7-76 (249)
167 1mwy_A ZNTA; open-faced beta-s 98.2 6.2E-06 2.1E-10 68.1 9.4 64 1029-1092 2-67 (73)
168 2g9o_A Copper-transporting ATP 98.2 3.9E-06 1.3E-10 72.7 8.4 66 1030-1095 3-75 (90)
169 1fvq_A Copper-transporting ATP 98.2 4.4E-06 1.5E-10 68.8 8.3 65 1031-1095 3-70 (72)
170 2qif_A Copper chaperone COPZ; 98.1 5.9E-06 2E-10 67.1 8.3 62 1030-1091 2-67 (69)
171 1kvi_A Copper-transporting ATP 98.1 3.7E-06 1.3E-10 70.8 7.2 66 1029-1094 7-76 (79)
172 2aj0_A Probable cadmium-transp 98.1 4.5E-06 1.5E-10 68.6 7.1 62 1028-1093 1-63 (71)
173 2ofg_X Zinc-transporting ATPas 98.1 6.9E-06 2.4E-10 74.3 8.7 67 1026-1092 4-74 (111)
174 1cpz_A Protein (COPZ); copper 98.1 5.2E-06 1.8E-10 67.4 7.1 61 1033-1093 3-67 (68)
175 1yjr_A Copper-transporting ATP 98.1 8E-06 2.7E-10 67.8 7.9 64 1030-1093 4-71 (75)
176 1yg0_A COP associated protein; 98.1 7.2E-06 2.5E-10 66.0 7.2 60 1031-1090 2-64 (66)
177 1opz_A Potential copper-transp 98.1 1E-05 3.5E-10 67.3 8.2 64 1029-1092 5-72 (76)
178 2ra8_A Uncharacterized protein 98.0 2.5E-06 8.7E-11 95.0 5.0 178 86-273 107-319 (362)
179 2ldi_A Zinc-transporting ATPas 98.0 1.5E-05 5.1E-10 65.2 8.3 63 1029-1091 2-68 (71)
180 2kt2_A Mercuric reductase; nme 98.0 7.7E-06 2.6E-10 66.6 6.5 60 1033-1092 3-65 (69)
181 2kyz_A Heavy metal binding pro 98.0 3.2E-06 1.1E-10 68.5 3.8 59 1032-1092 3-62 (67)
182 2kkh_A Putative heavy metal tr 98.0 2.1E-05 7.2E-10 68.9 9.1 67 1028-1094 14-84 (95)
183 4gt6_A Cell surface protein; l 98.0 0.00059 2E-08 77.6 23.5 154 99-271 52-215 (394)
184 1jww_A Potential copper-transp 98.0 2.2E-05 7.6E-10 66.0 8.6 66 1029-1094 2-71 (80)
185 3e4g_A ATP synthase subunit S, 97.9 5E-06 1.7E-10 80.8 4.3 41 616-657 115-155 (176)
186 3e4g_A ATP synthase subunit S, 97.9 3.2E-06 1.1E-10 82.1 2.9 38 820-858 115-152 (176)
187 1io0_A Tropomodulin; LRR prote 97.9 3.4E-06 1.1E-10 84.6 2.8 80 129-208 32-128 (185)
188 2a5y_B CED-4; apoptosis; HET: 97.9 2.4E-06 8.2E-11 101.8 0.8 59 4-66 407-472 (549)
189 2ra8_A Uncharacterized protein 97.9 1.4E-05 4.6E-10 89.1 6.7 217 17-239 44-320 (362)
190 4gt6_A Cell surface protein; l 97.8 0.00074 2.5E-08 76.7 20.9 110 123-236 53-170 (394)
191 1p6t_A Potential copper-transp 97.8 3.1E-05 1E-09 74.7 7.1 65 1030-1094 74-142 (151)
192 1io0_A Tropomodulin; LRR prote 97.7 1.1E-05 3.6E-10 80.9 3.0 118 148-274 28-164 (185)
193 2ew9_A Copper-transporting ATP 97.7 4.9E-05 1.7E-09 73.0 7.7 64 1030-1093 80-147 (149)
194 2rop_A Copper-transporting ATP 97.6 0.00011 3.8E-09 74.7 9.0 66 1030-1095 122-191 (202)
195 3rw6_A Nuclear RNA export fact 97.6 4.1E-05 1.4E-09 80.5 4.5 78 154-232 168-257 (267)
196 3rw6_A Nuclear RNA export fact 97.6 9.4E-06 3.2E-10 85.4 -0.6 62 175-239 167-233 (267)
197 2ew9_A Copper-transporting ATP 97.5 0.00022 7.5E-09 68.4 8.6 66 1029-1094 3-72 (149)
198 2rop_A Copper-transporting ATP 97.0 0.00087 3E-08 68.0 7.4 62 1026-1087 16-81 (202)
199 1p6t_A Potential copper-transp 96.9 0.0017 5.8E-08 62.2 8.1 62 1029-1090 5-70 (151)
200 3j09_A COPA, copper-exporting 96.5 0.0052 1.8E-07 74.9 9.3 61 1031-1091 3-67 (723)
201 4h09_A Hypothetical leucine ri 96.2 0.025 8.6E-07 63.6 12.3 125 106-236 215-343 (379)
202 4h09_A Hypothetical leucine ri 96.1 0.025 8.4E-07 63.6 12.2 155 106-279 192-350 (379)
203 3rfe_A Platelet glycoprotein I 95.1 0.033 1.1E-06 51.4 6.3 53 90-144 12-66 (130)
204 3rfe_A Platelet glycoprotein I 94.9 0.03 1E-06 51.6 5.7 55 182-239 12-68 (130)
205 1pgv_A TMD-1, tropomodulin TMD 94.2 0.034 1.2E-06 54.9 4.3 61 131-191 39-111 (197)
206 1pgv_A TMD-1, tropomodulin TMD 93.5 0.032 1.1E-06 55.2 2.6 106 107-212 40-168 (197)
207 3bpd_A Uncharacterized protein 91.5 0.58 2E-05 38.8 7.1 62 1028-1089 5-74 (100)
208 1vt4_I APAF-1 related killer D 91.2 0.095 3.2E-06 64.6 3.4 46 3-59 392-437 (1221)
209 2raq_A Conserved protein MTH88 90.0 1.7 5.7E-05 36.1 8.5 63 1027-1089 4-74 (97)
210 2x3d_A SSO6206; unknown functi 89.3 1.2 4.2E-05 36.7 7.2 60 1030-1089 5-73 (96)
211 3sfz_A APAF-1, apoptotic pepti 88.7 0.23 7.8E-06 65.6 4.3 40 27-66 412-453 (1249)
212 1z6t_A APAF-1, apoptotic prote 72.2 2.2 7.6E-05 50.7 4.1 38 26-63 411-450 (591)
213 2jsx_A Protein NAPD; TAT, proo 62.2 22 0.00076 30.0 7.0 47 1042-1088 17-64 (95)
214 2cpq_A FragIle X mental retard 37.8 45 0.0015 27.8 4.9 38 1045-1083 34-71 (91)
215 3cq1_A Putative uncharacterize 36.1 21 0.0007 30.7 2.8 35 1031-1065 42-82 (103)
216 3gzb_A Putative snoal-like pol 30.8 40 0.0014 29.6 3.6 33 1052-1084 118-151 (154)
217 2jsx_A Protein NAPD; TAT, proo 30.5 76 0.0026 26.7 5.3 35 1030-1064 42-76 (95)
218 1uwd_A Hypothetical protein TM 29.7 31 0.001 29.6 2.8 35 1031-1065 43-83 (103)
219 2gjh_A Designed protein; oblig 26.2 93 0.0032 21.8 4.0 47 1030-1076 2-51 (62)
220 3lno_A Putative uncharacterize 24.2 35 0.0012 29.5 2.2 35 1031-1065 45-86 (108)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.5e-40 Score=415.50 Aligned_cols=679 Identities=14% Similarity=0.048 Sum_probs=362.4
Q ss_pred CccEEEecCCCCCCC---CChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCC-c-c--cccCCCCCc
Q 001200 109 QLEFFCMSPRDHSIK---IPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD-I-A--IIGNLKKLE 181 (1125)
Q Consensus 109 ~L~~L~l~~n~~~~~---l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~-l-~--~~~~L~~L~ 181 (1125)
+++.|+|+++.+.+. +++ .|.++++|+.++++.+.+..+|..|+.+++|++|+|++|.+.. + . .++++++|+
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~~-~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 129 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVSS-SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHHH-HTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCC
T ss_pred cEEEEECCCCCcCCccCccCh-hHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCC
Confidence 455566655555433 443 3456666666666666666666666777777777777766542 2 3 566677777
Q ss_pred EEEccCCCCC-CCchhh-ccCCCCCEEeecCCCCCCccCccc---cCCCCCccEEEeecCccccccccccccCCCCChhh
Q 001200 182 ILSLVDSNIE-QLPEEM-AQLTQLRLFDLSGCSKLKVIPPNL---LSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQE 256 (1125)
Q Consensus 182 ~L~Ls~~~i~-~lp~~i-~~L~~L~~L~L~~~~~l~~ip~~~---l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (1125)
+|++++|.+. .+|..+ +++++|++|++++|. +...+... ++++++|++|++++|.+.. ...
T Consensus 130 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-------------~~~ 195 (768)
T 3rgz_A 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKISG-------------DVD 195 (768)
T ss_dssp EEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEES-------------CCB
T ss_pred EEECcCCccCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCCcccc-------------cCC
Confidence 7777766554 334433 666677777777666 55444333 5666677777776666540 112
Q ss_pred hCCCCCCCEEEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHHHhhhccccEEEccccC
Q 001200 257 LKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVP 336 (1125)
Q Consensus 257 L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~ 336 (1125)
+..+++|++|++++|.+....+.+ +.+++|++|+++++.
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~l-----------------------------------------~~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPFL-----------------------------------------GDCSALQHLDISGNK 234 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCBC-----------------------------------------TTCCSCCEEECCSSC
T ss_pred cccCCcCCEEECcCCcCCCCCccc-----------------------------------------ccCCCCCEEECcCCc
Confidence 255666667777666653322111 123345555554443
Q ss_pred CcccccccccccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccccccceeccCccCcccccCccEEEecc
Q 001200 337 GIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRN 416 (1125)
Q Consensus 337 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 416 (1125)
........ +..+++|++|++++|.....++ ...+++|+.|++.++.-...++. .....+++|++|++++
T Consensus 235 l~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~-------~~~l~~L~~L~L~~n~l~~~ip~--~~~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 235 LSGDFSRA--ISTCTELKLLNISSNQFVGPIP-------PLPLKSLQYLSLAENKFTGEIPD--FLSGACDTLTGLDLSG 303 (768)
T ss_dssp CCSCHHHH--TTTCSSCCEEECCSSCCEESCC-------CCCCTTCCEEECCSSEEEESCCC--CSCTTCTTCSEEECCS
T ss_pred CCCcccHH--HhcCCCCCEEECCCCcccCccC-------ccccCCCCEEECcCCccCCccCH--HHHhhcCcCCEEECcC
Confidence 22221222 2456666666666665322111 11456666776666431111111 1112358899999998
Q ss_pred CCCcCcccchhhhccCCcccEEecccccccchhhcccccCCccCCcccceecCccCEEeecCCCcccccccccccccccc
Q 001200 417 CDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQ 496 (1125)
Q Consensus 417 C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 496 (1125)
|. ++...+ ..++.+++|++|++++|.-...++.. ....+++|+.|+++++.-...++. .+..+
T Consensus 304 n~-l~~~~p-~~~~~l~~L~~L~L~~n~l~~~ip~~-----------~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l 366 (768)
T 3rgz_A 304 NH-FYGAVP-PFFGSCSLLESLALSSNNFSGELPMD-----------TLLKMRGLKVLDLSFNEFSGELPE----SLTNL 366 (768)
T ss_dssp SE-EEECCC-GGGGGCTTCCEEECCSSEEEEECCHH-----------HHTTCTTCCEEECCSSEEEECCCT----THHHH
T ss_pred Cc-CCCccc-hHHhcCCCccEEECCCCcccCcCCHH-----------HHhcCCCCCEEeCcCCccCccccH----HHHhh
Confidence 64 443333 34788899999999886533244310 134577888888887743323332 23444
Q ss_pred c-ccceecccCCCceeecccccCcccccccccccccccceeeccccccccccccCcccccCCCCcEEEEecCCCccccCC
Q 001200 497 T-RLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFP 575 (1125)
Q Consensus 497 ~-~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 575 (1125)
+ +|+.|++++|..... .+.......+++|++|++++|.+....+..+.. +++|+.|++++| .++...|
T Consensus 367 ~~~L~~L~Ls~N~l~~~--------~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~N-~l~~~~p 435 (768)
T 3rgz_A 367 SASLLTLDLSSNNFSGP--------ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN--CSELVSLHLSFN-YLSGTIP 435 (768)
T ss_dssp TTTCSEEECCSSEEEEE--------CCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG--CTTCCEEECCSS-EEESCCC
T ss_pred hcCCcEEEccCCCcCCC--------cChhhhhcccCCccEEECCCCccccccCHHHhc--CCCCCEEECcCC-cccCccc
Confidence 4 677777777642210 000000011556777777777755444443432 667777777764 4554323
Q ss_pred chhhhhccCCcEEEEeccccccceecccccccccceeecCccceeccccCCccceecCCCccCCCCcccEEEEeccCcee
Q 001200 576 SSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVK 655 (1125)
Q Consensus 576 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~ 655 (1125)
..+..+++|+.|++++|.--..++.... .+++|+.|++++|.-...++.... .+++|+.|++++|.-..
T Consensus 436 -~~l~~l~~L~~L~L~~n~l~~~~p~~~~--------~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~ 504 (768)
T 3rgz_A 436 -SSLGSLSKLRDLKLWLNMLEGEIPQELM--------YVKTLETLILDFNDLTGEIPSGLS--NCTNLNWISLSNNRLTG 504 (768)
T ss_dssp -GGGGGCTTCCEEECCSSCCCSCCCGGGG--------GCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCS
T ss_pred -HHHhcCCCCCEEECCCCcccCcCCHHHc--------CCCCceEEEecCCcccCcCCHHHh--cCCCCCEEEccCCccCC
Confidence 3356667777777777662223332211 456666666666554333333221 35666666666654332
Q ss_pred eeecccccccccccCcccCCcccceeeeeeecCCceEeeeccccccccccccCCccccccccEEEeeecCCC-cccHHHH
Q 001200 656 IFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESE-NFRIGFL 734 (1125)
Q Consensus 656 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~l 734 (1125)
.+|... ..+++|+.|++++|.+....+.. ...+++|+.|++++|+.. .+|....
T Consensus 505 ~~p~~~-----------------------~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 505 EIPKWI-----------------------GRLENLAILKLSNNSFSGNIPAE--LGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp CCCGGG-----------------------GGCTTCCEEECCSSCCEEECCGG--GGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred cCChHH-----------------------hcCCCCCEEECCCCcccCcCCHH--HcCCCCCCEEECCCCccCCcCChHHh
Confidence 333211 23556666666666554322211 123555666666666544 4443332
Q ss_pred hhcCCccEEEEE-cceeEEEccCh----------------hhhhhhhhcccccEEeccCcccccccccCCCCcccccCcc
Q 001200 735 ERFHNLEKLELR-WSSYKEIFSNE----------------EIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENL 797 (1125)
Q Consensus 735 ~~l~~L~~L~i~-c~~l~~~~~~~----------------~~~~~~~~l~~L~~L~l~~~~~L~~i~~~~~~~~~~l~~L 797 (1125)
.+..+..+.+. +..+..+.... ..+.....++.++.+.+.. ..+.+..+.....+++|
T Consensus 560 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~----~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 560 -KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS----RVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp -TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS----CEEEEECCCSCSSSBCC
T ss_pred -cccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc----ceecccCchhhhccccc
Confidence 22222222111 11111110000 0000011111111111111 00111112234567899
Q ss_pred cEEEEecccCccccccCccccCCccEEeEecCCCccccchhHhhhcCCCccEEEEccccchhhhhccCcccccccccccc
Q 001200 798 ESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSK 877 (1125)
Q Consensus 798 ~~L~i~~c~~L~~l~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~ 877 (1125)
+.|+++++.--..+|..++.+++|+.|+++++.--..+| ..+..+++|+.|+++++.--..++.. ...+++
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip--~~l~~L~~L~~LdLs~N~l~g~ip~~-------l~~l~~ 705 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP--DEVGDLRGLNILDLSSNKLDGRIPQA-------MSALTM 705 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCEECCCGG-------GGGCCC
T ss_pred cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC--hHHhCCCCCCEEECCCCcccCcCChH-------HhCCCC
Confidence 999999987666788889999999999999986444665 34678899999999988633233221 224788
Q ss_pred cceeccccCcccccccCCCccccCCCccEEEEcccCCcccCCCCCcCCCCccEEEeccCCccccccC
Q 001200 878 LKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFSHRVLSTPRLREVRQNWGLYKGCWEG 944 (1125)
Q Consensus 878 L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~~p~L~~~~~~~~~~~~~~~~ 944 (1125)
|+.|++++++--..+|.++ .+.++....+.++|.|.-.| +. .|-...+++|++++
T Consensus 706 L~~L~ls~N~l~g~iP~~~---~~~~~~~~~~~gN~~Lcg~~--------l~-~C~~~~~~~~~~~~ 760 (768)
T 3rgz_A 706 LTEIDLSNNNLSGPIPEMG---QFETFPPAKFLNNPGLCGYP--------LP-RCDPSNADGYAHHQ 760 (768)
T ss_dssp CSEEECCSSEEEEECCSSS---SGGGSCGGGGCSCTEEESTT--------SC-CCCSCC--------
T ss_pred CCEEECcCCcccccCCCch---hhccCCHHHhcCCchhcCCC--------Cc-CCCCCccCCCCCCC
Confidence 9999999987777888765 34555556677888887544 22 46777899999993
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.5e-38 Score=394.20 Aligned_cols=655 Identities=15% Similarity=0.031 Sum_probs=346.7
Q ss_pred CCCCEEEeecCCCcc----cCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcc-ccCc--ccCCCCC
Q 001200 86 KNCPTIFLHDCKHWE----VPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPS--LFHLPLN 157 (1125)
Q Consensus 86 ~~l~~L~l~~n~~~~----l~~~~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~-~lp~--~l~~l~~ 157 (1125)
.+++.|+++++.+.. ++..+ .++.|+.++++.+.+. .+|. .|.++++|++|+|++|.+. .+|. .++.+++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCC-CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCch-hhccCCCCCEEECCCCcCCCcCCChHHHhCCCC
Confidence 467788888777653 55444 6777777777776553 3333 3578888888888888876 4566 7888888
Q ss_pred CcEEEccCCCCCCc---ccccCCCCCcEEEccCCCCCCCc-hh---hccCCCCCEEeecCCCCCCccCccccCCCCCccE
Q 001200 158 LQTLCLDRCALGDI---AIIGNLKKLEILSLVDSNIEQLP-EE---MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLED 230 (1125)
Q Consensus 158 Lr~L~L~~~~l~~l---~~~~~L~~L~~L~Ls~~~i~~lp-~~---i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~ 230 (1125)
|++|+|++|.+... ..++++++|++||+++|.+...+ .. ++++++|++|++++|. +..... ++.+++|++
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~ 204 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD--VSRCVNLEF 204 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB--CTTCTTCCE
T ss_pred CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccCC--cccCCcCCE
Confidence 88888888876532 23377888888888888877543 34 6788888888888887 554433 477888888
Q ss_pred EEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceEEEE
Q 001200 231 LYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKL 310 (1125)
Q Consensus 231 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l 310 (1125)
|++++|.+. . .+..++++++|++|++++|.+...
T Consensus 205 L~Ls~n~l~-----------~-~~~~l~~l~~L~~L~Ls~n~l~~~---------------------------------- 238 (768)
T 3rgz_A 205 LDVSSNNFS-----------T-GIPFLGDCSALQHLDISGNKLSGD---------------------------------- 238 (768)
T ss_dssp EECCSSCCC-----------S-CCCBCTTCCSCCEEECCSSCCCSC----------------------------------
T ss_pred EECcCCcCC-----------C-CCcccccCCCCCEEECcCCcCCCc----------------------------------
Confidence 888888765 1 122377888888888888775421
Q ss_pred ecccCChhHHHhhhccccEEEccccCCcccccccccccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccc
Q 001200 311 KLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNL 390 (1125)
Q Consensus 311 ~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~ 390 (1125)
++..+..+++|++|+++++.... ..+. ..+++|++|++++|.....++.. ....+++|+.|++.++
T Consensus 239 ------~~~~l~~l~~L~~L~Ls~n~l~~-~~~~---~~l~~L~~L~L~~n~l~~~ip~~----~~~~~~~L~~L~Ls~n 304 (768)
T 3rgz_A 239 ------FSRAISTCTELKLLNISSNQFVG-PIPP---LPLKSLQYLSLAENKFTGEIPDF----LSGACDTLTGLDLSGN 304 (768)
T ss_dssp ------HHHHTTTCSSCCEEECCSSCCEE-SCCC---CCCTTCCEEECCSSEEEESCCCC----SCTTCTTCSEEECCSS
T ss_pred ------ccHHHhcCCCCCEEECCCCcccC-ccCc---cccCCCCEEECcCCccCCccCHH----HHhhcCcCCEEECcCC
Confidence 11122233444444444432211 1111 13444555555544322111110 0111244555555443
Q ss_pred cccceeccCccCcccccCccEEEeccCCCcCcccchhhhccCCcccEEecccccccchhhcccccCCccCCcccceecC-
Q 001200 391 IHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFS- 469 (1125)
Q Consensus 391 ~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~- 469 (1125)
. +... .+...+.+++|++|++++|.-...+|. ..+..+++|++|++++|.-...++. ....++
T Consensus 305 ~-l~~~--~p~~~~~l~~L~~L~L~~n~l~~~ip~-~~l~~l~~L~~L~Ls~n~l~~~~p~------------~l~~l~~ 368 (768)
T 3rgz_A 305 H-FYGA--VPPFFGSCSLLESLALSSNNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELPE------------SLTNLSA 368 (768)
T ss_dssp E-EEEC--CCGGGGGCTTCCEEECCSSEEEEECCH-HHHTTCTTCCEEECCSSEEEECCCT------------THHHHTT
T ss_pred c-CCCc--cchHHhcCCCccEEECCCCcccCcCCH-HHHhcCCCCCEEeCcCCccCccccH------------HHHhhhc
Confidence 2 1111 011123445555555555331112222 2244555555555555322112220 112232
Q ss_pred ccCEEeecCCCccccccccccccccc--ccccceecccCCCceeecccccCcccccccccccccccceeecccccccccc
Q 001200 470 QLHSLTLKFLPQLTSFYSQVKTSAAS--QTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIW 547 (1125)
Q Consensus 470 ~L~~L~l~~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 547 (1125)
+|+.|+++++.-...++. .+.. +++|++|++.+|..... .......+++|+.|++++|.+....
T Consensus 369 ~L~~L~Ls~N~l~~~~~~----~~~~~~~~~L~~L~L~~n~l~~~----------~p~~l~~l~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILP----NLCQNPKNTLQELYLQNNGFTGK----------IPPTLSNCSELVSLHLSFNYLSGTI 434 (768)
T ss_dssp TCSEEECCSSEEEEECCT----TTTCSTTCCCCEEECCSSEEEEE----------CCGGGGGCTTCCEEECCSSEEESCC
T ss_pred CCcEEEccCCCcCCCcCh----hhhhcccCCccEEECCCCccccc----------cCHHHhcCCCCCEEECcCCcccCcc
Confidence 555555554432211111 0111 34455555555532100 0111223455555555555544333
Q ss_pred ccCcccccCCCCcEEEEecCCCccccCCchhhhhccCCcEEEEeccccccceecccccccccceeecCccceeccccCCc
Q 001200 548 CNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSE 627 (1125)
Q Consensus 548 ~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 627 (1125)
+..+.. +++|+.|++++| .++...| ..+..+++|+.|++++|.-...++.... .+++|+.|++++|.-
T Consensus 435 p~~l~~--l~~L~~L~L~~n-~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~--------~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 435 PSSLGS--LSKLRDLKLWLN-MLEGEIP-QELMYVKTLETLILDFNDLTGEIPSGLS--------NCTNLNWISLSNNRL 502 (768)
T ss_dssp CGGGGG--CTTCCEEECCSS-CCCSCCC-GGGGGCTTCCEEECCSSCCCSCCCGGGG--------GCTTCCEEECCSSCC
T ss_pred cHHHhc--CCCCCEEECCCC-cccCcCC-HHHcCCCCceEEEecCCcccCcCCHHHh--------cCCCCCEEEccCCcc
Confidence 333322 455555555553 3333222 2244555555555555542112222111 345555555555543
Q ss_pred cceecCCCccCCCCcccEEEEeccCceeeeecccccccccccCcccCCcccceeeeeeecCCceEeeecccccccccccc
Q 001200 628 LKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQ 707 (1125)
Q Consensus 628 L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 707 (1125)
...+|.... .+++|+.|++++|.-...+|... ..+++|+.|++++|.+....+..
T Consensus 503 ~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l-----------------------~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 503 TGEIPKWIG--RLENLAILKLSNNSFSGNIPAEL-----------------------GDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CSCCCGGGG--GCTTCCEEECCSSCCEEECCGGG-----------------------GGCTTCCEEECCSSEEESBCCGG
T ss_pred CCcCChHHh--cCCCCCEEECCCCcccCcCCHHH-----------------------cCCCCCCEEECCCCccCCcCChH
Confidence 333333222 35556666666554333333221 23555666666665554211111
Q ss_pred CCc-------cccccccEEEeeecCC-------------CcccHHHHhhcCCccEEEEEcceeEEEccChhhhhhhhhcc
Q 001200 708 FPK-------HIFRNLKNLEVVNDES-------------ENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLT 767 (1125)
Q Consensus 708 ~~~-------~~~~~L~~L~l~~c~~-------------l~~~~~~l~~l~~L~~L~i~c~~l~~~~~~~~~~~~~~~l~ 767 (1125)
+.. ......+...+.++.. .......+..++.+..+++..+.+....+. ....++
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~-----~~~~l~ 632 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP-----TFDNNG 632 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC-----SCSSSB
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch-----hhhccc
Confidence 100 0000011111111110 011112233445555555555555555443 345688
Q ss_pred cccEEeccCcccccccccCCCCcccccCcccEEEEecccCccccccCccccCCccEEeEecCCCccccchhHhhhcCCCc
Q 001200 768 QVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCL 847 (1125)
Q Consensus 768 ~L~~L~l~~~~~L~~i~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L 847 (1125)
+|+.|+++++.--..++ ...+.+++|+.|+++++.--..+|..++.+++|+.|++++|.--..+| ..+..+++|
T Consensus 633 ~L~~LdLs~N~l~g~ip----~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip--~~l~~l~~L 706 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIP----KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP--QAMSALTML 706 (768)
T ss_dssp CCCEEECCSSCCBSCCC----GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC--GGGGGCCCC
T ss_pred cccEEECcCCcccccCC----HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC--hHHhCCCCC
Confidence 99999999865333443 346789999999999988777888889999999999999986444554 456789999
Q ss_pred cEEEEccccchhhhhccCcccccccccccccceeccccCccccc
Q 001200 848 TKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTS 891 (1125)
Q Consensus 848 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 891 (1125)
+.|+++++.---.++. .. .|.++....+.+.|.|-.
T Consensus 707 ~~L~ls~N~l~g~iP~-~~-------~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 707 TEIDLSNNNLSGPIPE-MG-------QFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp SEEECCSSEEEEECCS-SS-------SGGGSCGGGGCSCTEEES
T ss_pred CEEECcCCcccccCCC-ch-------hhccCCHHHhcCCchhcC
Confidence 9999999864333332 11 366777777778777643
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.9e-36 Score=377.44 Aligned_cols=176 Identities=20% Similarity=0.255 Sum_probs=145.8
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccCCC
Q 001200 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (1125)
Q Consensus 89 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~~ 167 (1125)
+.++.+++++.++|..+. +++++|++++|.+. .++...|.++++|++|++++|.+..+ |.+|+++++|++|+|++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 567888888888987764 78999999999887 67777789999999999999999876 6778899999999999999
Q ss_pred CCCc--ccccCCCCCcEEEccCCCCCCCc-hhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCcccccccc
Q 001200 168 LGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (1125)
Q Consensus 168 l~~l--~~~~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~ 244 (1125)
+..+ ..|+++.+|++|++++|.+..+| ..|+++++|++|++++|. +..++.+.++++++|++|++++|.+.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~----- 158 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQ----- 158 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCC-----
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCccc-----
Confidence 8877 36999999999999999998886 578999999999999998 77666655889999999999998876
Q ss_pred ccccCCCCChhhhC--CCCCCCEEEeecCCCcccCC
Q 001200 245 LNVGRSNASLQELK--LLSHLTTLEIQICDAMILPK 278 (1125)
Q Consensus 245 ~~~~~~~~~~~~L~--~L~~L~~L~l~~~~~~~~~~ 278 (1125)
......++ .+++|+.|++++|.+..+++
T Consensus 159 ------~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 159 ------ALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp ------CBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred ------ccCHHHhhccccccccEEECCCCcccccCh
Confidence 22334433 55789999999888765544
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2e-35 Score=368.13 Aligned_cols=556 Identities=15% Similarity=0.154 Sum_probs=341.6
Q ss_pred ecCCCccCCCcccCCCCCCEEEeecCCCcccCCC-C-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc
Q 001200 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (1125)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~-~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l 148 (1125)
..+.+...+|. ....++++|++++|.+..++.. + ++++|++|++++|.+. .+++..|.++++|++|++++|.+..+
T Consensus 11 cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 11 CSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp CCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCC
T ss_pred CCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccCcc
Confidence 34445555553 4568999999999999998875 3 8999999999999987 56667789999999999999999999
Q ss_pred Cc-ccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCC-chhhccCCCCCEEeecCCCCCCccCccccC-
Q 001200 149 PS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLS- 223 (1125)
Q Consensus 149 p~-~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~ip~~~l~- 223 (1125)
|. +|+.+++|++|++++|.+..+ ..|+++++|++|++++|.+..+ |..++++++|++|++++|. +..++...++
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 167 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDI 167 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGG
T ss_pred ChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhc
Confidence 86 699999999999999999877 5799999999999999999866 4578999999999999998 8887765443
Q ss_pred -CCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeCCcccccCCC
Q 001200 224 -GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNY 302 (1125)
Q Consensus 224 -~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 302 (1125)
.+++|++|++++|.+. ...+..++.+.+|+.|++..+.+.....
T Consensus 168 ~~~~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~l~~~~l~~~~~------------------------ 212 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIK-----------EFSPGCFHAIGRLFGLFLNNVQLGPSLT------------------------ 212 (680)
T ss_dssp GTTCEESEEECTTCCCC-----------CBCTTGGGGSSEECEEECTTCCCHHHHH------------------------
T ss_pred cccccccEEECCCCccc-----------ccChhhhhhhhhhhhhhccccccChhhH------------------------
Confidence 5689999999999876 3345667888889999887765421000
Q ss_pred CCceEEEEecccCChhHHHhhhccccEEEccccCCcccccccccccccc--cCcEEEeecCCCeeEeeeCCccccccccc
Q 001200 303 KNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFL--QLKHLHVQNNPFILFIVDSMAWVRYNAFL 380 (1125)
Q Consensus 303 ~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~--~L~~L~L~~~~~l~~l~~~~~~~~~~~~~ 380 (1125)
..+. .....++|+.|+++++.........+ ..++ +|++|++++|.. ..++. ..+..++
T Consensus 213 ------------~~~~-~~l~~~~L~~L~L~~n~l~~~~~~~~--~~l~~~~L~~L~Ls~n~l-~~~~~----~~~~~l~ 272 (680)
T 1ziw_A 213 ------------EKLC-LELANTSIRNLSLSNSQLSTTSNTTF--LGLKWTNLTMLDLSYNNL-NVVGN----DSFAWLP 272 (680)
T ss_dssp ------------HHHH-HHHTTSCCCEEECTTSCCCEECTTTT--GGGGGSCCCEEECTTSCC-CEECT----TTTTTCT
T ss_pred ------------HHHH-HHhhhccccEEEccCCcccccChhHh--hccCcCCCCEEECCCCCc-CccCc----ccccCcc
Confidence 0000 00113566777776654322222222 3333 377777776652 22210 1133445
Q ss_pred ccceeecccccccceeccCccCcccccCccEEEeccCCCcC-----cccch--hhhccCCcccEEecccccccchhhccc
Q 001200 381 LLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLK-----NIFSF--SFVRGLPQLQTLNVINCKNMKEIFTVG 453 (1125)
Q Consensus 381 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~-----~l~~~--~~~~~l~~L~~L~l~~c~~l~~i~~~~ 453 (1125)
+|+.|++.++ .+.... ......+++|+.|++.++..-. .+|.. ..+..++
T Consensus 273 ~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~-------------------- 329 (680)
T 1ziw_A 273 QLEYFFLEYN-NIQHLF--SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK-------------------- 329 (680)
T ss_dssp TCCEEECCSC-CBSEEC--TTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT--------------------
T ss_pred cccEeeCCCC-ccCccC--hhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC--------------------
Confidence 5555555542 222221 1112234455555554421100 00000 0133344
Q ss_pred ccCCccCCcccceecCccCEEeecCCCcccccccccccccccccccceecccCCCce--eecccccCccccccccccccc
Q 001200 454 RENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPRE--VILEDECDTLMPFFNEKVVFP 531 (1125)
Q Consensus 454 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l--~~~~~~~~~~~~~~~~~~~~~ 531 (1125)
+|+.|+++++. +..+.. ..+..+++|++|++++|..- .++. ..+ .....+
T Consensus 330 ----------------~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~Ls~n~~~~~~l~~-------~~f-~~~~~~ 381 (680)
T 1ziw_A 330 ----------------CLEHLNMEDND-IPGIKS---NMFTGLINLKYLSLSNSFTSLRTLTN-------ETF-VSLAHS 381 (680)
T ss_dssp ----------------TCCEEECCSCC-BCCCCT---TTTTTCTTCCEEECTTCBSCCCEECT-------TTT-GGGTTS
T ss_pred ----------------CCCEEECCCCc-cCCCCh---hHhccccCCcEEECCCCchhhhhcch-------hhh-cccccC
Confidence 44444444432 111111 12344455555555554210 0000 000 001135
Q ss_pred ccceeeccccccccccccCcccccCCCCcEEEEecCCCccccCCchhhhhccCCcEEEEeccccccceecccccccccce
Q 001200 532 NLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTT 611 (1125)
Q Consensus 532 ~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~ 611 (1125)
+|+.|++++|.+..+.+..+.. +++|+.|++++| .+....+...+..+++|++|++++|. +..+......
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~------ 451 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSW--LGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFA------ 451 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTT------
T ss_pred cCceEECCCCCCCeEChhhhhC--CCCCCEEeCCCC-cCccccCcccccCcccccEEecCCCC-cceeChhhhh------
Confidence 7888888888877766655543 788888888885 45433355567788888888888887 5444332211
Q ss_pred eecCccceeccccCCc--cceecCCCccCCCCcccEEEEeccCceeeeecccccccccccCcccCCcccceeeeeeecCC
Q 001200 612 FVFPKVTFLKLWNLSE--LKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSK 689 (1125)
Q Consensus 612 ~~~~~L~~L~l~~c~~--L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 689 (1125)
.+++|+.|++.++.. +..++... ..+++|+.|++++| +++.++...+ ..+++
T Consensus 452 -~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L~Ls~N-~l~~i~~~~~----------------------~~l~~ 505 (680)
T 1ziw_A 452 -LVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTILDLSNN-NIANINDDML----------------------EGLEK 505 (680)
T ss_dssp -TCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEEECCSS-CCCCCCTTTT----------------------TTCTT
T ss_pred -cCcccccchhccccccccccCCccc--ccCCCCCEEECCCC-CCCcCChhhh----------------------ccccc
Confidence 567888888877642 23333322 24788888888875 4555543210 34677
Q ss_pred ceEeeeccccccccccccCC------ccccccccEEEeeecCCCcccHHHHhhcCCccEEEEEcceeEEEccChhhhhhh
Q 001200 690 LEELKLSGKDIAMICQSQFP------KHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHA 763 (1125)
Q Consensus 690 L~~L~l~~~~~~~~~~~~~~------~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~c~~l~~~~~~~~~~~~~ 763 (1125)
|++|++++|.+..++...++ ...+++|+.|++++|....+|...+.++++|+.|++++++++.+.+. ..
T Consensus 506 L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~-----~~ 580 (680)
T 1ziw_A 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS-----VF 580 (680)
T ss_dssp CCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----TT
T ss_pred cCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHh-----Hh
Confidence 88888888887766544333 23456666777766655555555566666666666665555544332 12
Q ss_pred hhcccccEEeccC
Q 001200 764 EMLTQVKSLKLWE 776 (1125)
Q Consensus 764 ~~l~~L~~L~l~~ 776 (1125)
..+++|+.|++++
T Consensus 581 ~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 581 NNQVSLKSLNLQK 593 (680)
T ss_dssp TTCTTCCEEECTT
T ss_pred CCCCCCCEEECCC
Confidence 2345555555554
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.1e-34 Score=351.41 Aligned_cols=179 Identities=20% Similarity=0.171 Sum_probs=147.6
Q ss_pred CCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccCC
Q 001200 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRC 166 (1125)
Q Consensus 88 l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~ 166 (1125)
-++++.++..+.++|..+. +.+++|++++|.+. .+++..|.++++|++|++++|.+..+ |.+|+++++|++|+|++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP-NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEECCCCCcccCcCCCC-CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 3467777778888888773 47899999999887 67667789999999999999999876 788999999999999999
Q ss_pred CCCCc--ccccCCCCCcEEEccCCCCCCC-chhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccc
Q 001200 167 ALGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (1125)
Q Consensus 167 ~l~~l--~~~~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~ 243 (1125)
.+..+ ..++++++|++|++++|.+..+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~---- 166 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH---- 166 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC----
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCccc----
Confidence 98865 6789999999999999999987 5678999999999999998 77764222566999999999999876
Q ss_pred cccccCCCCChhhhCCCCCCC--EEEeecCCCcccCCcc
Q 001200 244 GLNVGRSNASLQELKLLSHLT--TLEIQICDAMILPKGL 280 (1125)
Q Consensus 244 ~~~~~~~~~~~~~L~~L~~L~--~L~l~~~~~~~~~~~~ 280 (1125)
...+..++.+++|+ .|++++|.+..+++..
T Consensus 167 -------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~ 198 (606)
T 3t6q_A 167 -------YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198 (606)
T ss_dssp -------EECHHHHHTTTTCCSEEEECTTCCCCEECTTT
T ss_pred -------ccChhhhhhhcccceeEEecCCCccCccChhH
Confidence 34456788888888 8888888876665543
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.3e-35 Score=357.11 Aligned_cols=181 Identities=18% Similarity=0.199 Sum_probs=145.4
Q ss_pred CCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccCC
Q 001200 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRC 166 (1125)
Q Consensus 88 l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~ 166 (1125)
.++++.+++.++++|..+. +++++|++++|.+. .++...|.++++|++|++++|.+..+ |.+|+++++||+|+|++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCceEccCCCcccCCCCCC-CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 4578888888888888765 78999999999887 67777788999999999999999887 667899999999999999
Q ss_pred CCCCc--ccccCCCCCcEEEccCCCCCCCc-hhhccCCCCCEEeecCCCCCC--ccCccccCCCCCccEEEeecCccccc
Q 001200 167 ALGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLK--VIPPNLLSGLSRLEDLYMGNTSVKWE 241 (1125)
Q Consensus 167 ~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~--~ip~~~l~~L~~L~~L~l~~~~~~~~ 241 (1125)
.+..+ ..|+++.+|++|++++|.+..+| ..++++++|++|++++|. +. .+|.. ++++++|++|++++|.+...
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-HhhcCCCCEEEccCCcceec
Confidence 98866 67899999999999999998886 578999999999999998 65 46766 88999999999999887621
Q ss_pred cccccccCCCCChhhhCCCCC-CCEEEeecCCCcccCCcc
Q 001200 242 FEGLNVGRSNASLQELKLLSH-LTTLEIQICDAMILPKGL 280 (1125)
Q Consensus 242 ~~~~~~~~~~~~~~~L~~L~~-L~~L~l~~~~~~~~~~~~ 280 (1125)
. ...+..+.+++. +.+|++++|.+..++...
T Consensus 169 ~--------~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~ 200 (606)
T 3vq2_A 169 T--------VNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200 (606)
T ss_dssp C--------TTTTHHHHHCTTCCCEEECTTCCCCEECTTT
T ss_pred C--------hhhhhhhhccccccceeeccCCCcceeCccc
Confidence 1 122344444544 568999998887766654
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-33 Score=346.97 Aligned_cols=190 Identities=21% Similarity=0.224 Sum_probs=159.0
Q ss_pred EEecCCCccCCCcccCCCCCCEEEeecCCCcccCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcc
Q 001200 69 FMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL 146 (1125)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~--~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~ 146 (1125)
+...+.+...+|. ...+++++|++++|.+..++... ++++|++|++++|.+. .+++..|.++++|++|++++|.+.
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 16 YQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp EECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC
T ss_pred eEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCccc
Confidence 3344555566654 56789999999999999888743 8999999999999887 677778899999999999999999
Q ss_pred cc-CcccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCC--CCchhhccCCCCCEEeecCCCCCCccCccc
Q 001200 147 SL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNL 221 (1125)
Q Consensus 147 ~l-p~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~ 221 (1125)
.+ |.+|+++++|++|++++|.+..+ ..++++.+|++|++++|.+. .+|..++++++|++|++++|. +..++...
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 172 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVND 172 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTT
T ss_pred ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhh
Confidence 88 88999999999999999999866 67999999999999999998 479999999999999999998 88887665
Q ss_pred cCCCCCcc----EEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCC
Q 001200 222 LSGLSRLE----DLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1125)
Q Consensus 222 l~~L~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 273 (1125)
++.+.+|+ +|++++|.+.. .....+... +|+.|++++|.+
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~~-----------~~~~~~~~~-~L~~L~L~~n~~ 216 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPIDF-----------IQDQAFQGI-KLHELTLRGNFN 216 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCCE-----------ECTTTTTTC-EEEEEEEESCCS
T ss_pred hhhhhccccccceeeccCCCcce-----------eCcccccCc-eeeeeeccCCcc
Confidence 77777665 89999998762 122233333 799999998875
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.7e-33 Score=340.04 Aligned_cols=531 Identities=18% Similarity=0.175 Sum_probs=320.1
Q ss_pred ccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEcc
Q 001200 110 LEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLV 186 (1125)
Q Consensus 110 L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls 186 (1125)
-++++..+..+. .+|..+ -.++++|++++|.++.+ |.+|+++++|++|+|++|.+..+ ..|+++++|++|+++
T Consensus 14 ~~~~~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 14 NKTYNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TTEEECTTSCCS-SCCTTS---CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCcc-cCcCCC---CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCC
Confidence 346777777666 788655 34789999999999988 67899999999999999998866 679999999999999
Q ss_pred CCCCCCC-chhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCE
Q 001200 187 DSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (1125)
Q Consensus 187 ~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 265 (1125)
+|.+..+ |..|+++++|++|++++|. +..++...++++++|++|++++|.+. ...+..+..+++|++
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~ 157 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHIS-----------SIKLPKGFPTEKLKV 157 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCC-----------CCCCCTTCCCTTCCE
T ss_pred CCcccccChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCccc-----------ccCcccccCCcccCE
Confidence 9999876 6789999999999999998 88885555899999999999999886 222344555899999
Q ss_pred EEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHHHhhhcccc--EEEccccCCcccccc
Q 001200 266 LEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIE--ELYLDEVPGIKNVLY 343 (1125)
Q Consensus 266 L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~--~L~L~~~~~~~~~~~ 343 (1125)
|++++|.+..++... ++.+++|+ .|+++++.... ..+
T Consensus 158 L~L~~n~l~~~~~~~----------------------------------------~~~l~~L~~l~L~l~~n~l~~-~~~ 196 (606)
T 3t6q_A 158 LDFQNNAIHYLSKED----------------------------------------MSSLQQATNLSLNLNGNDIAG-IEP 196 (606)
T ss_dssp EECCSSCCCEECHHH----------------------------------------HHTTTTCCSEEEECTTCCCCE-ECT
T ss_pred EEcccCcccccChhh----------------------------------------hhhhcccceeEEecCCCccCc-cCh
Confidence 999999876554322 22333444 44444433221 111
Q ss_pred cccccccccCcEEEeecCCCeeEeeeCCcccccccc--cccceeecccccccceeccCccCcccc--cCccEEEeccCCC
Q 001200 344 DLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAF--LLLESLVLHNLIHLEKICLGQLRAESF--YKLKIIKVRNCDK 419 (1125)
Q Consensus 344 ~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~--~~L~~L~l~~C~~ 419 (1125)
.. ....+|++|++.+|..+... ...+ ..++.+.+..+..+............+ .+|+.|+++++ .
T Consensus 197 ~~--~~~~~L~~L~l~~~~~~~~~--------~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~ 265 (606)
T 3t6q_A 197 GA--FDSAVFQSLNFGGTQNLLVI--------FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-Y 265 (606)
T ss_dssp TT--TTTCEEEEEECTTCSCHHHH--------HHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC-C
T ss_pred hH--hhhccccccccCCchhHHHH--------hhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC-c
Confidence 11 12345666666665422110 0111 112233333322222111000001111 25777777774 4
Q ss_pred cCcccchhhhccCCcccEEecccccccchhhcccccCCccCCcccceecCccCEEeecCCCccccccccccccccccccc
Q 001200 420 LKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRL 499 (1125)
Q Consensus 420 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L 499 (1125)
++.+++ ..+..+++|++|+++++ .+..++. ....+++|++|+++++. +..+.. ..+..+++|
T Consensus 266 l~~~~~-~~~~~l~~L~~L~l~~n-~l~~lp~------------~l~~l~~L~~L~l~~n~-l~~~~~---~~~~~l~~L 327 (606)
T 3t6q_A 266 FFNISS-NTFHCFSGLQELDLTAT-HLSELPS------------GLVGLSTLKKLVLSANK-FENLCQ---ISASNFPSL 327 (606)
T ss_dssp CSSCCT-TTTTTCTTCSEEECTTS-CCSCCCS------------SCCSCTTCCEEECTTCC-CSBGGG---GCGGGCTTC
T ss_pred cCccCH-HHhccccCCCEEeccCC-ccCCCCh------------hhcccccCCEEECccCC-cCcCch---hhhhccCcC
Confidence 566554 34677788888888774 4555541 23456777888777763 333322 235567777
Q ss_pred ceecccCCCce-eecccccCcccccccccccccccceeecccccccccc--ccCcccccCCCCcEEEEecCCCccccCCc
Q 001200 500 KELSTHTLPRE-VILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIW--CNQLAAVYSQNLTRLIVHGCEKLKYLFPS 576 (1125)
Q Consensus 500 ~~L~l~~c~~l-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~l~~L~~L~l~~C~~L~~l~~~ 576 (1125)
+.|++++|... .++ ......+++|++|++++|.+.... ...+. .+++|++|++++| .++.+ ++
T Consensus 328 ~~L~l~~n~~~~~~~----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~l~~L~~L~l~~n-~l~~~-~~ 393 (606)
T 3t6q_A 328 THLSIKGNTKRLELG----------TGCLENLENLRELDLSHDDIETSDCCNLQLR--NLSHLQSLNLSYN-EPLSL-KT 393 (606)
T ss_dssp SEEECCSCSSCCBCC----------SSTTTTCTTCCEEECCSSCCCEEEESTTTTT--TCTTCCEEECCSC-SCEEE-CT
T ss_pred CEEECCCCCcccccc----------hhhhhccCcCCEEECCCCccccccCcchhcc--cCCCCCEEECCCC-cCCcC-CH
Confidence 77777777432 111 011234677888888887766554 22332 3678888888774 55555 33
Q ss_pred hhhhhccCCcEEEEeccccccceecccccccccceeecCccceeccccCCccceecCCCccCCCCcccEEEEeccCcee-
Q 001200 577 SMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVK- 655 (1125)
Q Consensus 577 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~- 655 (1125)
..+..+++|++|++++|. +....... ....+++|+.|++++|.- ........ ..+++|++|++++|.--.
T Consensus 394 ~~~~~l~~L~~L~l~~n~-l~~~~~~~------~~~~l~~L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~L~~n~l~~~ 464 (606)
T 3t6q_A 394 EAFKECPQLELLDLAFTR-LKVKDAQS------PFQNLHLLKVLNLSHSLL-DISSEQLF-DGLPALQHLNLQGNHFPKG 464 (606)
T ss_dssp TTTTTCTTCSEEECTTCC-EECCTTCC------TTTTCTTCCEEECTTCCC-BTTCTTTT-TTCTTCCEEECTTCBCGGG
T ss_pred HHhcCCccCCeEECCCCc-CCCcccch------hhhCcccCCEEECCCCcc-CCcCHHHH-hCCCCCCEEECCCCCCCcc
Confidence 456677788888888776 33321110 001466777777777653 22222222 246777777777763211
Q ss_pred eeecccccccccccCcccCCcccceeeeeeecCCceEeeeccccccccccccCCccccccccEEEeeecCCCcccHHHHh
Q 001200 656 IFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLE 735 (1125)
Q Consensus 656 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~ 735 (1125)
.++.. .. -..+++|++|++++|.+..+.+..+ ..+++|+.|++++|.....+...+.
T Consensus 465 ~~~~~----~~-----------------~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~ 521 (606)
T 3t6q_A 465 NIQKT----NS-----------------LQTLGRLEILVLSFCDLSSIDQHAF--TSLKMMNHVDLSHNRLTSSSIEALS 521 (606)
T ss_dssp EECSS----CG-----------------GGGCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred ccccc----hh-----------------hccCCCccEEECCCCccCccChhhh--ccccCCCEEECCCCccCcCChhHhC
Confidence 01100 00 0346677777777776665433322 3356677777777765544445556
Q ss_pred hcCCccEEEEEcceeEEEccChhhhhhhhhcccccEEeccCcc
Q 001200 736 RFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELS 778 (1125)
Q Consensus 736 ~l~~L~~L~i~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 778 (1125)
++++| .|+++.+.+..+.+. .+..+++|+.|++++++
T Consensus 522 ~l~~L-~L~L~~N~l~~~~~~-----~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 522 HLKGI-YLNLASNHISIILPS-----LLPILSQQRTINLRQNP 558 (606)
T ss_dssp TCCSC-EEECCSSCCCCCCGG-----GHHHHHTSSEEECTTCC
T ss_pred ccccc-EEECcCCcccccCHh-----hcccCCCCCEEeCCCCC
Confidence 66666 666665555544332 22345555555555543
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.2e-31 Score=332.08 Aligned_cols=526 Identities=17% Similarity=0.156 Sum_probs=313.0
Q ss_pred ecCCCccCCCcccCCCCCCEEEeecCCCcccCCC-C-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc
Q 001200 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (1125)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~-~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l 148 (1125)
..+.+...+|. .+.++++|++++|.+..+... + ++++|++|++++|.....+++..|.++++|++|+|++|.+..+
T Consensus 11 cs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 11 YRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88 (844)
T ss_dssp ESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred ccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc
Confidence 34555566665 778999999999999887543 3 8999999999999777688778889999999999999999977
Q ss_pred -CcccCCCCCCcEEEccCCCCCC--cc--cccCCCCCcEEEccCCCCCCCc--hhhccCCCCCEEeecCCCCCCccCccc
Q 001200 149 -PSLFHLPLNLQTLCLDRCALGD--IA--IIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVIPPNL 221 (1125)
Q Consensus 149 -p~~l~~l~~Lr~L~L~~~~l~~--l~--~~~~L~~L~~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~ip~~~ 221 (1125)
|.+|+.+++|++|+|++|.+.. +. .++++++|++|++++|.+..++ ..|+++++|++|++++|. +..+..+.
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~ 167 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHE 167 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGG
T ss_pred CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHH
Confidence 8899999999999999999875 33 3899999999999999998763 579999999999999998 66654444
Q ss_pred cCCC--CCccEEEeecCccccccccccccCCCCChhhhCCCC------CCCEEEeecCCCcc-cCCcc----ccccccEE
Q 001200 222 LSGL--SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLS------HLTTLEIQICDAMI-LPKGL----FSKKLERY 288 (1125)
Q Consensus 222 l~~L--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~------~L~~L~l~~~~~~~-~~~~~----~~~~L~~l 288 (1125)
++.+ ++|++|++++|.+.. ..+..++.+. .|+.|++++|.+.. .+..+ ....+..+
T Consensus 168 l~~l~~~~L~~L~L~~n~l~~-----------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANSLYS-----------RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236 (844)
T ss_dssp GHHHHHCSSCCCEECCSBSCC-----------CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred cccccCCccceEECCCCcccc-----------ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence 7777 899999999998761 1222233332 49999999887532 22222 12233333
Q ss_pred EEEeCCcccccCCCCCceEEEEecccCChhHHHhhhccccEEEccccCCcccc-cccccccccccCcEEEeecCCCeeEe
Q 001200 289 KIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNV-LYDLDIEGFLQLKHLHVQNNPFILFI 367 (1125)
Q Consensus 289 ~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~l~~l 367 (1125)
.+.......... .....+. ...+.....++|+.|++++|.... +
T Consensus 237 ~l~~~~~~~~~~----------------------------------~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-~ 281 (844)
T 3j0a_A 237 ILAHHIMGAGFG----------------------------------FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-L 281 (844)
T ss_dssp ECCSSCCBCSSS----------------------------------CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-E
T ss_pred eccccccccccc----------------------------------ccccCCCChhhhhccccCCccEEECCCCcccc-c
Confidence 322100000000 0000000 000100112455555555554221 1
Q ss_pred eeCCcccccccccccceeecccccccceeccCccCcccccCccEEEeccCCCcCcccchhhhccCCcccEEecccccccc
Q 001200 368 VDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMK 447 (1125)
Q Consensus 368 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~ 447 (1125)
.. ..+..+++|+.|++.++ .+..+... ....+++|++|+++++ .++.+++ ..+..+++|++|+++++ .+.
T Consensus 282 ~~----~~~~~l~~L~~L~L~~n-~i~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~i~ 351 (844)
T 3j0a_A 282 NS----RVFETLKDLKVLNLAYN-KINKIADE--AFYGLDNLQVLNLSYN-LLGELYS-SNFYGLPKVAYIDLQKN-HIA 351 (844)
T ss_dssp CS----CCSSSCCCCCEEEEESC-CCCEECTT--TTTTCSSCCEEEEESC-CCSCCCS-CSCSSCTTCCEEECCSC-CCC
T ss_pred Ch----hhhhcCCCCCEEECCCC-cCCCCChH--HhcCCCCCCEEECCCC-CCCccCH-HHhcCCCCCCEEECCCC-CCC
Confidence 00 12334455555555552 33332111 1234566677777663 3444433 23566677777777664 344
Q ss_pred hhhcccccCCccCCcccceecCccCEEeecCCCcccccccccccccccccccceecccCCCceeecccccCccccccccc
Q 001200 448 EIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEK 527 (1125)
Q Consensus 448 ~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 527 (1125)
.+++ .....+++|+.|+++++. ++.+ ..+++|+.|++++|....++
T Consensus 352 ~~~~-----------~~~~~l~~L~~L~Ls~N~-l~~i--------~~~~~L~~L~l~~N~l~~l~-------------- 397 (844)
T 3j0a_A 352 IIQD-----------QTFKFLEKLQTLDLRDNA-LTTI--------HFIPSIPDIFLSGNKLVTLP-------------- 397 (844)
T ss_dssp CCCS-----------SCSCSCCCCCEEEEETCC-SCCC--------SSCCSCSEEEEESCCCCCCC--------------
T ss_pred ccCh-----------hhhcCCCCCCEEECCCCC-CCcc--------cCCCCcchhccCCCCccccc--------------
Confidence 3331 022346667777766642 2222 12455666666665422111
Q ss_pred ccccccceeeccccccccccccCcccccCCCCcEEEEecCCCccccCCchhhhhccCCcEEEEeccccccceeccccccc
Q 001200 528 VVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEE 607 (1125)
Q Consensus 528 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 607 (1125)
....+++.|++++|.+..+..... ...+++|+.|++++ ++++...+...+..+++|+.|++++|. +..++.....
T Consensus 398 ~~~~~l~~L~ls~N~l~~l~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~~-- 472 (844)
T 3j0a_A 398 KINLTANLIHLSENRLENLDILYF-LLRVPHLQILILNQ-NRFSSCSGDQTPSENPSLEQLFLGENM-LQLAWETELC-- 472 (844)
T ss_dssp CCCTTCCEEECCSCCCCSSTTHHH-HTTCTTCCEEEEES-CCCCCCCSSSSSCSCTTCCBCEEESCC-CSSSCCSCCC--
T ss_pred ccccccceeecccCccccCchhhh-hhcCCccceeeCCC-CcccccccccccccCCccccccCCCCc-cccccccccc--
Confidence 013467777777777554322110 01367888888887 456654343344557788888888876 4433221100
Q ss_pred ccceeecCccceeccccCCccceecCCCccCCCCcccEEEEeccCceeeeecccccccccccCcccCCcccceeeeeeec
Q 001200 608 ATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVT 687 (1125)
Q Consensus 608 ~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 687 (1125)
......+++|+.|+++++ .++.++...+. .+++|+.|+++++ +++.++... ..
T Consensus 473 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~Ls~N-~l~~l~~~~------------------------~~ 525 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHN-YLNSLPPGVFS-HLTALRGLSLNSN-RLTVLSHND------------------------LP 525 (844)
T ss_dssp SSCSSCBCCEECCCCCHH-HHTTCCTTSSS-SCCSCSEEEEESC-CCSSCCCCC------------------------CC
T ss_pred hhhhcCcccccEEECCCC-cccccChhHcc-chhhhheeECCCC-CCCccChhh------------------------hh
Confidence 000114567777777776 45555554432 5777777777775 566554321 12
Q ss_pred CCceEeeeccccccccccccCCccccccccEEEeeecCC
Q 001200 688 SKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDES 726 (1125)
Q Consensus 688 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 726 (1125)
++|+.|++++|.+.... ...+.+|+.|++++|+.
T Consensus 526 ~~L~~L~Ls~N~l~~~~-----~~~~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 526 ANLEILDISRNQLLAPN-----PDVFVSLSVLDITHNKF 559 (844)
T ss_dssp SCCCEEEEEEECCCCCC-----SCCCSSCCEEEEEEECC
T ss_pred ccccEEECCCCcCCCCC-----hhHhCCcCEEEecCCCc
Confidence 56777777777665432 22345666666666653
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=1.5e-30 Score=330.05 Aligned_cols=171 Identities=18% Similarity=0.186 Sum_probs=142.0
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCC-cccc-CcccCCCCCCcEEEccCC
Q 001200 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ-FLSL-PSLFHLPLNLQTLCLDRC 166 (1125)
Q Consensus 89 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~-i~~l-p~~l~~l~~Lr~L~L~~~ 166 (1125)
+..+.+++.++.+|. -.++|++|+|++|.+. .++...|.++++|++|++++|. +..+ |.+|+++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 467788889999998 5689999999999987 5666678999999999999994 5566 788999999999999999
Q ss_pred CCCCc--ccccCCCCCcEEEccCCCCCC-Cchh--hccCCCCCEEeecCCCCCCccC-ccccCCCCCccEEEeecCcccc
Q 001200 167 ALGDI--AIIGNLKKLEILSLVDSNIEQ-LPEE--MAQLTQLRLFDLSGCSKLKVIP-PNLLSGLSRLEDLYMGNTSVKW 240 (1125)
Q Consensus 167 ~l~~l--~~~~~L~~L~~L~Ls~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~ip-~~~l~~L~~L~~L~l~~~~~~~ 240 (1125)
.+..+ ..|+++.+|++|+|++|.+.. +|.. ++++++|++|++++|. +..++ ...++++++|++|++++|.+.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~- 161 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIF- 161 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCC-
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCC-
Confidence 99865 789999999999999999885 5654 8999999999999998 66553 334899999999999999876
Q ss_pred ccccccccCCCCChhhhCCC--CCCCEEEeecCCCc
Q 001200 241 EFEGLNVGRSNASLQELKLL--SHLTTLEIQICDAM 274 (1125)
Q Consensus 241 ~~~~~~~~~~~~~~~~L~~L--~~L~~L~l~~~~~~ 274 (1125)
......+..+ ++|+.|+++.|.+.
T Consensus 162 ----------~~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 162 ----------LVCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp ----------CCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred ----------eeCHHHcccccCCccceEECCCCccc
Confidence 2234455555 78999999988764
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=5e-31 Score=321.70 Aligned_cols=145 Identities=18% Similarity=0.308 Sum_probs=68.5
Q ss_pred EEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccCCCCC
Q 001200 91 IFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALG 169 (1125)
Q Consensus 91 L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~~l~ 169 (1125)
++.++..+.++|..+. +.+++|++++|.+. .++...|.++++|++|++++|.+..+ |.+|+++++|++|+|++|.+.
T Consensus 12 ~~c~~~~l~~ip~~l~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 12 YQCMELNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp EECCSSCCSSCCSSSC-SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEeCCCCccccCCCcc-ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC
Confidence 3333334444444331 34455555555443 33333444555555555555555444 234455555555555555544
Q ss_pred Cc--ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCc--cCccccCCCCCccEEEeecCccc
Q 001200 170 DI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 170 ~l--~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~--ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
.+ ..|+++.+|++|++++|.+..+|. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+.
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCccc
Confidence 33 344555555555555555554443 34555555555555554 332 3333 455555555555554443
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=2e-30 Score=316.44 Aligned_cols=186 Identities=22% Similarity=0.228 Sum_probs=155.5
Q ss_pred cCCCccCCCcccCCCCCCEEEeecCCCcccCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC
Q 001200 72 RNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP 149 (1125)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~--~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp 149 (1125)
.+.+...+|. ....++++|++++|.+..++... ++++|++|++++|.+. .++...|.++++|++|++++|.+..+|
T Consensus 15 ~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (570)
T 2z63_A 15 MELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLA 92 (570)
T ss_dssp CSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccC
Confidence 3444555553 45778999999999999887543 8999999999999887 688788999999999999999999885
Q ss_pred -cccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCC--CchhhccCCCCCEEeecCCCCCCccCccccCC
Q 001200 150 -SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSG 224 (1125)
Q Consensus 150 -~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~ 224 (1125)
.+|+.+++|++|++++|.+..+ ..++++++|++|++++|.+.. +|..++++++|++|++++|. +..++...++.
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 171 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRV 171 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHH
T ss_pred HhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccc
Confidence 7899999999999999999987 359999999999999999985 79999999999999999998 88887666788
Q ss_pred CCCc----cEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCC
Q 001200 225 LSRL----EDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (1125)
Q Consensus 225 L~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 272 (1125)
+.+| ++|++++|.+.. ..+..+..+ +|+.|++++|.
T Consensus 172 l~~L~~~~~~L~l~~n~l~~-----------~~~~~~~~~-~L~~L~l~~n~ 211 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNF-----------IQPGAFKEI-RLHKLTLRNNF 211 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCE-----------ECTTTTTTC-EEEEEEEESCC
T ss_pred hhccchhhhhcccCCCCcee-----------cCHHHhccC-cceeEeccccc
Confidence 8888 889999888762 223344444 68888887764
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=3.2e-30 Score=312.83 Aligned_cols=486 Identities=17% Similarity=0.160 Sum_probs=281.0
Q ss_pred EEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC-cccCCCCCCcEEEccCCCCC
Q 001200 91 IFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALG 169 (1125)
Q Consensus 91 L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~L~~~~l~ 169 (1125)
.+.+++.++++|..+. +.|++|++++|.+. .++...|.++++|++|++++|.+..++ .+|+.+++|++|++++|.+.
T Consensus 10 c~~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT-AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp EECTTSCCSSCCSCCC-TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred EECCCCccccccccCC-CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 3445555666665543 56666666666655 444444566666666666666666553 45666666666666666666
Q ss_pred Cc--ccccCCCCCcEEEccCCCCCCC--chhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccc
Q 001200 170 DI--AIIGNLKKLEILSLVDSNIEQL--PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (1125)
Q Consensus 170 ~l--~~~~~L~~L~~L~Ls~~~i~~l--p~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~ 245 (1125)
.+ ..++++++|++|++++|.+..+ |..++++++|++|++++|..+..+|...++++++|++|++++|.+.
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~------ 161 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR------ 161 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC------
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc------
Confidence 54 3366666666666666666533 4556666666666666665455565444666666666666666654
Q ss_pred cccCCCCChhhhCCCCCCCEEEeecCCCcccCCcc--ccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHHHhh
Q 001200 246 NVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQ 323 (1125)
Q Consensus 246 ~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~ 323 (1125)
...+..++.+++|++|+++.+....++... .+.+|+.+++..+.......... .....
T Consensus 162 -----~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------------~~~~~ 221 (549)
T 2z81_A 162 -----NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL---------------PVDEV 221 (549)
T ss_dssp -----EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCC---------------SSCCC
T ss_pred -----ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccccc---------------chhhh
Confidence 223445566666666666666554444433 34556666555433211000000 00011
Q ss_pred hccccEEEccccCCcccccccc--cccccccCcEEEeecCCCeeEeeeCC--cccccccccccceeecccccccceec-c
Q 001200 324 LKGIEELYLDEVPGIKNVLYDL--DIEGFLQLKHLHVQNNPFILFIVDSM--AWVRYNAFLLLESLVLHNLIHLEKIC-L 398 (1125)
Q Consensus 324 l~~L~~L~L~~~~~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~l~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~-~ 398 (1125)
+++|+.|++.++......+..+ ....+++|+.|++++|... .+.+.. .+.....+++|+.|.+.++. +..+. .
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~ 299 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN-GLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYLF 299 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE-CCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGS
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc-ccccccccchhhhhhhcccccccccccc-cchhhhc
Confidence 2344444444332111100000 0134456666666665421 111000 01123445666666665532 11110 0
Q ss_pred CccC--cccccCccEEEeccCCCcCcccchhhhccCCcccEEecccccccchhhcccccCCccCCcccceecCccCEEee
Q 001200 399 GQLR--AESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTL 476 (1125)
Q Consensus 399 ~~~~--~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l 476 (1125)
...+ ...+++|+.|+++++ ++..+|. ..+..+++|++|+++++.-...++... .....+++|+.|++
T Consensus 300 ~~l~~~~~~~~~L~~L~l~~n-~l~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~---------~~~~~l~~L~~L~L 368 (549)
T 2z81_A 300 YDLSTVYSLLEKVKRITVENS-KVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKNS---------ACKGAWPSLQTLVL 368 (549)
T ss_dssp CCCCHHHHHSTTCCEEEEESS-CCCCCCH-HHHHHCTTCCEEECCSSCCCHHHHHHH---------TCTTSSTTCCEEEC
T ss_pred ccchhhhhhcccceEEEeccC-ccccCCH-HHHhcCccccEEEccCCccccccccch---------hhhhccccCcEEEc
Confidence 0000 124568999999985 4777654 345678999999999865433332100 01246789999999
Q ss_pred cCCCcccccccccccccccccccceecccCCCceeecccccCcccccccccccccccceeeccccccccccccCcccccC
Q 001200 477 KFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYS 556 (1125)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l 556 (1125)
+++ .++.++.. ...+..+++|+.|++++|.--.++ .....+++|+.|++++|.++.+... ..
T Consensus 369 s~N-~l~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~lp-----------~~~~~~~~L~~L~Ls~N~l~~l~~~-----~~ 430 (549)
T 2z81_A 369 SQN-HLRSMQKT-GEILLTLKNLTSLDISRNTFHPMP-----------DSCQWPEKMRFLNLSSTGIRVVKTC-----IP 430 (549)
T ss_dssp TTS-CCCCHHHH-HHHGGGCTTCCEEECTTCCCCCCC-----------SCCCCCTTCCEEECTTSCCSCCCTT-----SC
T ss_pred cCC-cccccccc-hhhhhcCCCCCEEECCCCCCccCC-----------hhhcccccccEEECCCCCcccccch-----hc
Confidence 986 34444310 012567889999999998533222 1233578899999999997754332 13
Q ss_pred CCCcEEEEecCCCccccCCchhhhhccCCcEEEEeccccccceecccccccccceeecCccceeccccCCccceecCCCc
Q 001200 557 QNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTH 636 (1125)
Q Consensus 557 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 636 (1125)
++|+.|++++| +++.+ ...+++|++|++++|. ++.++... .+++|+.|+++++ .++.++....
T Consensus 431 ~~L~~L~Ls~N-~l~~~-----~~~l~~L~~L~Ls~N~-l~~ip~~~---------~l~~L~~L~Ls~N-~l~~~~~~~~ 493 (549)
T 2z81_A 431 QTLEVLDVSNN-NLDSF-----SLFLPRLQELYISRNK-LKTLPDAS---------LFPVLLVMKISRN-QLKSVPDGIF 493 (549)
T ss_dssp TTCSEEECCSS-CCSCC-----CCCCTTCCEEECCSSC-CSSCCCGG---------GCTTCCEEECCSS-CCCCCCTTGG
T ss_pred CCceEEECCCC-Chhhh-----cccCChhcEEECCCCc-cCcCCCcc---------cCccCCEEecCCC-ccCCcCHHHH
Confidence 68999999985 67765 2468899999999996 77776421 6889999999986 5666665543
Q ss_pred cCCCCcccEEEEeccCc
Q 001200 637 TSKWPMLKKLEVYGCDK 653 (1125)
Q Consensus 637 ~~~~~~L~~L~i~~C~~ 653 (1125)
. .+++|+.|++++|+-
T Consensus 494 ~-~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 494 D-RLTSLQKIWLHTNPW 509 (549)
T ss_dssp G-GCTTCCEEECCSSCB
T ss_pred h-cCcccCEEEecCCCc
Confidence 3 589999999998864
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=6.5e-29 Score=301.26 Aligned_cols=220 Identities=19% Similarity=0.208 Sum_probs=157.0
Q ss_pred CCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEE
Q 001200 107 YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEIL 183 (1125)
Q Consensus 107 ~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L 183 (1125)
|+...+.+++++.+. .+|..++ ++|++|++++|.+..+ |.+|..+++|++|++++|.+..+ ..|+++++|++|
T Consensus 4 C~~~~~c~~~~~~l~-~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 4 CDASGVCDGRSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp ECTTSEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCceEECCCCccc-cccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence 444555677777776 7887653 7899999999999987 67899999999999999999876 679999999999
Q ss_pred EccCCCCCCCchh-hccCCCCCEEeecCCCCCCcc--CccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCC
Q 001200 184 SLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVI--PPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLL 260 (1125)
Q Consensus 184 ~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~i--p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 260 (1125)
++++|.+..+|.. |+++++|++|++++|. +..+ |.. ++++++|++|++++|.... ......++++
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~~l~~L~~L~L~~n~~~~----------~~~~~~~~~l 147 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSL-FPNLTNLQTLRIGNVETFS----------EIRRIDFAGL 147 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCS-CTTCTTCCEEEEEESSSCC----------EECTTTTTTC
T ss_pred ECCCCccCccCHHHhccCCCCcEEECCCCc-ccccchhhh-hhccCCccEEECCCCcccc----------ccCHhhhhcc
Confidence 9999999988765 9999999999999998 7754 444 8999999999999987330 1223578889
Q ss_pred CCCCEEEeecCCCccc-CCcc-ccccccEEEEEeCCcccccCCCCCceEEEEecccCChhH-HHhhhccccEEEccccCC
Q 001200 261 SHLTTLEIQICDAMIL-PKGL-FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDE-VIMQLKGIEELYLDEVPG 337 (1125)
Q Consensus 261 ~~L~~L~l~~~~~~~~-~~~~-~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~-~~~~l~~L~~L~L~~~~~ 337 (1125)
++|++|++++|.+... +..+ .+.+|+.+++..+.. ..++. ....+++|+.|+++++..
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-------------------~~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-------------------AFLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-------------------TTHHHHHHHSTTTBSEEEEESCBC
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCcc-------------------cccchhhHhhcccccEEEccCCcc
Confidence 9999999999987543 3333 334444444332221 33333 234466777777766543
Q ss_pred ccccc-ccccccccccCcEEEeecC
Q 001200 338 IKNVL-YDLDIEGFLQLKHLHVQNN 361 (1125)
Q Consensus 338 ~~~~~-~~~~~~~l~~L~~L~L~~~ 361 (1125)
..... +......+++|+.|+++++
T Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 209 ARFQFSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp TTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred ccccccccchhhhhhcccceecccc
Confidence 22111 0001123556666666655
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.7e-28 Score=303.78 Aligned_cols=179 Identities=17% Similarity=0.287 Sum_probs=136.2
Q ss_pred EEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC-cccCCCCCCcEEEccCCCC
Q 001200 90 TIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCAL 168 (1125)
Q Consensus 90 ~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~L~~~~l 168 (1125)
+.+-++..++++|..+. +.+++|+|++|.+. .++...|.++++|++|+|++|.|+.+| .+|.++++|++|+|++|.+
T Consensus 35 ~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEECCCCCcCccCCCCC-cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 44445556778887763 57899999999887 788888899999999999999998885 4688999999999999998
Q ss_pred CCc--ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCcc--CccccCCCCCccEEEeecCccccccc
Q 001200 169 GDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVI--PPNLLSGLSRLEDLYMGNTSVKWEFE 243 (1125)
Q Consensus 169 ~~l--~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~i--p~~~l~~L~~L~~L~l~~~~~~~~~~ 243 (1125)
+.+ ..|+++.+|++|++++|+++.+|. .|+++++|++|++++|. +..+ |.. ++.+++|++|++++|.+....
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~- 189 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY- 189 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEEC-
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCccccccc-
Confidence 876 568899999999999999988875 58899999999999987 6644 444 788999999999988876111
Q ss_pred cccccCCCCChhhhCCCCC-CCEEEeecCCCcccCCcc
Q 001200 244 GLNVGRSNASLQELKLLSH-LTTLEIQICDAMILPKGL 280 (1125)
Q Consensus 244 ~~~~~~~~~~~~~L~~L~~-L~~L~l~~~~~~~~~~~~ 280 (1125)
...+..+..+.. +..++++.+.+..++...
T Consensus 190 -------~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~ 220 (635)
T 4g8a_A 190 -------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 220 (635)
T ss_dssp -------GGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred -------cccccchhhhhhhhhhhhcccCcccccCccc
Confidence 112333444432 347788888776665544
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.6e-28 Score=293.59 Aligned_cols=143 Identities=20% Similarity=0.194 Sum_probs=117.4
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccCCC
Q 001200 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (1125)
Q Consensus 89 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~~ 167 (1125)
+++++++|.++.+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+..+ |.+|+.+++|++|+|++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 678899999998888776 88999999998877 67767788899999999999998877 7788899999999999998
Q ss_pred CCCcccccCCCCCcEEEccCCCCCC--CchhhccCCCCCEEeecCCCCCCccCccccCCCCCc--cEEEeecCcc
Q 001200 168 LGDIAIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL--EDLYMGNTSV 238 (1125)
Q Consensus 168 l~~l~~~~~L~~L~~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L--~~L~l~~~~~ 238 (1125)
++.++.. .+.+|++|++++|.+.. +|..++++++|++|++++|. +... .++.+++| ++|++++|.+
T Consensus 81 l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 81 LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred eeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeecccc
Confidence 8877444 78889999999988875 56788888888888888887 5542 26667777 8888888776
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2e-26 Score=285.24 Aligned_cols=164 Identities=23% Similarity=0.250 Sum_probs=140.5
Q ss_pred CCCccCCCcccCCCCCCEEEeecCCCcccCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC-
Q 001200 73 NDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP- 149 (1125)
Q Consensus 73 ~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~--~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp- 149 (1125)
+.+...+|. +.+.++++|+|++|.++.+++.. ++++|++|+|++|.+. .+++.+|.++++|++|+|++|.++.+|
T Consensus 40 ~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 40 ELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp TSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 445555553 56789999999999999998653 8999999999999987 788889999999999999999999997
Q ss_pred cccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCC--CchhhccCCCCCEEeecCCCCCCccCccccCCC
Q 001200 150 SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGL 225 (1125)
Q Consensus 150 ~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L 225 (1125)
..|.++++|++|+|++|.++.+ ..|+++++|++|++++|.+.. +|..++.+++|++|++++|. +..++.+.+..+
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L 196 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVL 196 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccch
Confidence 4689999999999999999987 469999999999999999875 57889999999999999998 888876656665
Q ss_pred CCcc----EEEeecCccc
Q 001200 226 SRLE----DLYMGNTSVK 239 (1125)
Q Consensus 226 ~~L~----~L~l~~~~~~ 239 (1125)
.+++ .++++.|.+.
T Consensus 197 ~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp HTCTTCCCEEECTTCCCC
T ss_pred hhhhhhhhhhhcccCccc
Confidence 5544 6777777665
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2.6e-27 Score=293.90 Aligned_cols=34 Identities=12% Similarity=0.277 Sum_probs=27.7
Q ss_pred CCCCEEEeecCCCc-ccCCCC-CCCCccEEEe-cCCC
Q 001200 86 KNCPTIFLHDCKHW-EVPEGL-EYPQLEFFCM-SPRD 119 (1125)
Q Consensus 86 ~~l~~L~l~~n~~~-~l~~~~-~~~~L~~L~l-~~n~ 119 (1125)
.+++.|+|+++.+. .+|+.+ +++.|++|+| ++|.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~ 359 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE 359 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeeccccc
Confidence 57889999999887 677766 8999999999 6664
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.5e-27 Score=292.14 Aligned_cols=191 Identities=14% Similarity=0.221 Sum_probs=143.0
Q ss_pred CCCCEEEeecCCCc-ccCCCC-CCCCccEEEecCCCC------CC-----------------------------------
Q 001200 86 KNCPTIFLHDCKHW-EVPEGL-EYPQLEFFCMSPRDH------SI----------------------------------- 122 (1125)
Q Consensus 86 ~~l~~L~l~~n~~~-~l~~~~-~~~~L~~L~l~~n~~------~~----------------------------------- 122 (1125)
.+++.|+++++.+. .+|+.+ .+++|++|+|++|.+ ..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47889999999986 677776 899999999988843 00
Q ss_pred ------------------------------------CCChhhhcCCCCCcEEEeecCCccc------------------c
Q 001200 123 ------------------------------------KIPNHVFAGMSNLRGLALSNMQFLS------------------L 148 (1125)
Q Consensus 123 ------------------------------------~l~~~~f~~l~~Lr~L~Ls~~~i~~------------------l 148 (1125)
.+|. .|.++++|++|+|++|.+.. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCH-HHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 1444 36778888888888888887 8
Q ss_pred CcccC--CCCCCcEEEccCCCCCC-c-ccccCCCCCcEEEccCCC-CC--CCchhhccC------CCCCEEeecCCCCCC
Q 001200 149 PSLFH--LPLNLQTLCLDRCALGD-I-AIIGNLKKLEILSLVDSN-IE--QLPEEMAQL------TQLRLFDLSGCSKLK 215 (1125)
Q Consensus 149 p~~l~--~l~~Lr~L~L~~~~l~~-l-~~~~~L~~L~~L~Ls~~~-i~--~lp~~i~~L------~~L~~L~L~~~~~l~ 215 (1125)
|..++ ++++|++|+|++|.+.. + ..++++++|++|++++|. ++ .+|..++++ ++|++|++++|. +.
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~ 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC
Confidence 88888 88888888888887553 3 678888888888888887 77 478777776 888888888887 77
Q ss_pred ccCc--cccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCcc-cccc-ccEEEEE
Q 001200 216 VIPP--NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKK-LERYKIF 291 (1125)
Q Consensus 216 ~ip~--~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~-~~~~-L~~l~l~ 291 (1125)
.+|. . ++++++|++|++++|.+. +..+ .++.+++|+.|++++|.+..+|..+ .+.+ |+.+++.
T Consensus 319 ~ip~~~~-l~~l~~L~~L~L~~N~l~-----------g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 319 TFPVETS-LQKMKKLGMLECLYNQLE-----------GKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp SCCCHHH-HTTCTTCCEEECCSCCCE-----------EECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECC
T ss_pred ccCchhh-hccCCCCCEEeCcCCcCc-----------cchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEcc
Confidence 8887 5 788888888888888765 1223 6677778888888888777666655 3444 5555444
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=7.6e-27 Score=280.79 Aligned_cols=141 Identities=16% Similarity=0.184 Sum_probs=120.1
Q ss_pred cEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC-cccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccC
Q 001200 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVD 187 (1125)
Q Consensus 111 ~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~ 187 (1125)
++|++++|.+. .+|..++ ++|++|++++|.+..++ .+|..+++|++|+|++|.++.+ ..|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 67899999888 7887664 89999999999999886 6899999999999999999876 6899999999999999
Q ss_pred CCCCCCchhhccCCCCCEEeecCCCCCCc--cCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCC--
Q 001200 188 SNIEQLPEEMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHL-- 263 (1125)
Q Consensus 188 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~--ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L-- 263 (1125)
|.++.+|.. .+.+|++|++++|. +.. +|.. ++++++|++|++++|.+. . ..++.+++|
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~-~~~l~~L~~L~L~~n~l~-----------~---~~~~~l~~L~L 140 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNA-FDALPICKE-FGNMSQLKFLGLSTTHLE-----------K---SSVLPIAHLNI 140 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSC-CSSCCCCGG-GGGCTTCCEEEEEESSCC-----------G---GGGGGGTTSCE
T ss_pred CceeecCcc--ccCCccEEeccCCc-cccccchhh-hccCCcceEEEecCcccc-----------h---hhcccccccee
Confidence 999999877 89999999999998 765 4555 899999999999999876 1 345555666
Q ss_pred CEEEeecCCC
Q 001200 264 TTLEIQICDA 273 (1125)
Q Consensus 264 ~~L~l~~~~~ 273 (1125)
+.|++++|.+
T Consensus 141 ~~L~l~~n~l 150 (520)
T 2z7x_B 141 SKVLLVLGET 150 (520)
T ss_dssp EEEEEEECTT
T ss_pred eEEEeecccc
Confidence 9999998876
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=5.9e-26 Score=275.29 Aligned_cols=145 Identities=23% Similarity=0.288 Sum_probs=100.5
Q ss_pred CCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccC
Q 001200 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDR 165 (1125)
Q Consensus 87 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~ 165 (1125)
..+++++++|.++.+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+..+ |.+|..+++|++|+|++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 34778888888887777654 77788888877776 56666677777888888888777766 56677777777777777
Q ss_pred CCCCCcccccCCCCCcEEEccCCCCCCCc--hhhccCCCCCEEeecCCCCCCccCccccCCCCCc--cEEEeecCcc
Q 001200 166 CALGDIAIIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL--EDLYMGNTSV 238 (1125)
Q Consensus 166 ~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L--~~L~l~~~~~ 238 (1125)
|.++.++.. .+.+|++|++++|.+..+| ..++++++|++|++++|. +.... +..+.+| ++|++++|.+
T Consensus 110 N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 110 NRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence 777766333 6777777777777777653 567777777777777766 44322 3444444 6666666655
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.2e-26 Score=284.27 Aligned_cols=448 Identities=15% Similarity=0.171 Sum_probs=242.4
Q ss_pred CCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccC----------------------------------
Q 001200 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFH---------------------------------- 153 (1125)
Q Consensus 108 ~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~---------------------------------- 153 (1125)
.+++.|+|+++.+.+.+|+. |.++++|++|+|++|.+..-+..++
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~-l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGG-GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChH-HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 58999999999998888864 6899999999999996521110000
Q ss_pred -------------------CCCCCcEEEcc--CCCCCCc-ccccCCCCCcEEEccCCCCCC------------------C
Q 001200 154 -------------------LPLNLQTLCLD--RCALGDI-AIIGNLKKLEILSLVDSNIEQ------------------L 193 (1125)
Q Consensus 154 -------------------~l~~Lr~L~L~--~~~l~~l-~~~~~L~~L~~L~Ls~~~i~~------------------l 193 (1125)
....++.+.+. +|.++.+ ..++++++|++|+|++|.+.. +
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 00111111111 2233334 456667777777777776665 6
Q ss_pred chhhc--cCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCc-cccccccccccCCC-CChhhhCCC------CCC
Q 001200 194 PEEMA--QLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS-VKWEFEGLNVGRSN-ASLQELKLL------SHL 263 (1125)
Q Consensus 194 p~~i~--~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~-~~~~~L~~L------~~L 263 (1125)
|..++ ++++|++|++++|.....+|.. ++++++|++|++++|. +. + ..+..++.+ ++|
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~-----------~~~lp~~~~~L~~~~~l~~L 307 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGIS-----------GEQLKDDWQALADAPVGEKI 307 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSC-----------HHHHHHHHHHHHHSGGGGTC
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCc-----------cccchHHHHhhhccccCCCC
Confidence 76666 7777777777776645566655 6677777777777665 43 1 123334443 667
Q ss_pred CEEEeecCCCcccCC--cc-ccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHHHhhhccccEEEccccCCccc
Q 001200 264 TTLEIQICDAMILPK--GL-FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKN 340 (1125)
Q Consensus 264 ~~L~l~~~~~~~~~~--~~-~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~ 340 (1125)
++|++++|.+..+|. .+ .+.+|+.+++..+... +.++ .+..+++|+.|+++++... .
T Consensus 308 ~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~------------------g~ip-~~~~l~~L~~L~L~~N~l~-~ 367 (636)
T 4eco_A 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE------------------GKLP-AFGSEIKLASLNLAYNQIT-E 367 (636)
T ss_dssp CEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCE------------------EECC-CCEEEEEESEEECCSSEEE-E
T ss_pred CEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCc------------------cchh-hhCCCCCCCEEECCCCccc-c
Confidence 777777776666666 44 5556666655433321 0112 2234567888888776433 3
Q ss_pred cccccccccccc-CcEEEeecCCCeeEeeeCCcccccccccccceeecccccccceeccCccC-----cccccCccEEEe
Q 001200 341 VLYDLDIEGFLQ-LKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLR-----AESFYKLKIIKV 414 (1125)
Q Consensus 341 ~~~~~~~~~l~~-L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-----~~~~~~L~~L~l 414 (1125)
+... +..+++ |++|++++|.. +.++.. .....+++|+.|+++++. +.......+. ...+++|++|++
T Consensus 368 lp~~--l~~l~~~L~~L~Ls~N~l-~~lp~~---~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 368 IPAN--FCGFTEQVENLSFAHNKL-KYIPNI---FDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp CCTT--SEEECTTCCEEECCSSCC-SSCCSC---CCTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred ccHh--hhhhcccCcEEEccCCcC-cccchh---hhhcccCccCEEECcCCc-CCCcchhhhcccccccccCCCCCEEEC
Confidence 3333 367888 99999988873 333321 112234478888887742 2221000010 014458888888
Q ss_pred ccCCCcCcccchhhhccCCcccEEecccccccchhhcccccCCccCCcccceecCccCEEeecCCCcccccccccccccc
Q 001200 415 RNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAA 494 (1125)
Q Consensus 415 ~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 494 (1125)
+++ +++.+|. ..+..+++|++|+++++ .+..++..... ........+++|+.|+++++. ++.++.. +.
T Consensus 441 s~N-~l~~lp~-~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~----~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~----~~ 508 (636)
T 4eco_A 441 SNN-QISKFPK-ELFSTGSPLSSINLMGN-MLTEIPKNSLK----DENENFKNTYLLTSIDLRFNK-LTKLSDD----FR 508 (636)
T ss_dssp CSS-CCCSCCT-HHHHTTCCCSEEECCSS-CCSBCCSSSSE----ETTEECTTGGGCCEEECCSSC-CCBCCGG----GS
T ss_pred cCC-ccCcCCH-HHHccCCCCCEEECCCC-CCCCcCHHHhc----cccccccccCCccEEECcCCc-CCccChh----hh
Confidence 884 4666655 44666888888888874 44444411000 000000011255555555432 2222220 11
Q ss_pred cccccceecccCCCceeecccccCcccccccccccccccceeeccccccccccccCcccccCCCCcEEEEecC-----CC
Q 001200 495 SQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGC-----EK 569 (1125)
Q Consensus 495 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C-----~~ 569 (1125)
...+++|+.|++++|.+..+ +..+. .+++|+.|++++| ++
T Consensus 509 --------------------------------~~~l~~L~~L~Ls~N~l~~i-p~~~~--~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 509 --------------------------------ATTLPYLVGIDLSYNSFSKF-PTQPL--NSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp --------------------------------TTTCTTCCEEECCSSCCSSC-CCGGG--GCSSCCEEECCSCBCTTCCB
T ss_pred --------------------------------hccCCCcCEEECCCCCCCCc-Chhhh--cCCCCCEEECCCCcccccCc
Confidence 01355666666666665543 22222 2566666666432 23
Q ss_pred ccccCCchhhhhccCCcEEEEeccccccceecccccccccceeecCccceeccccCCccceecCCCc-------cCCCCc
Q 001200 570 LKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTH-------TSKWPM 642 (1125)
Q Consensus 570 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~-------~~~~~~ 642 (1125)
+....| ..+..+++|+.|++++|. +..++.. .+++|+.|++++++-.. +..... ...+..
T Consensus 554 l~~~~p-~~l~~l~~L~~L~Ls~N~-l~~ip~~----------~~~~L~~L~Ls~N~l~~-~~~~~~~~~~~~~~~~l~~ 620 (636)
T 4eco_A 554 TLREWP-EGITLCPSLTQLQIGSND-IRKVNEK----------ITPNISVLDIKDNPNIS-IDLSYVCPYIEAGMYMLFY 620 (636)
T ss_dssp CCCCCC-TTGGGCSSCCEEECCSSC-CCBCCSC----------CCTTCCEEECCSCTTCE-EECTTTHHHHHTTCCEEEC
T ss_pred ccccCh-HHHhcCCCCCEEECCCCc-CCccCHh----------HhCcCCEEECcCCCCcc-ccHHhcchhhhcccceeec
Confidence 333323 234556777777777766 4555432 33667777777665322 111100 001233
Q ss_pred ccEEEEeccCcee
Q 001200 643 LKKLEVYGCDKVK 655 (1125)
Q Consensus 643 L~~L~i~~C~~L~ 655 (1125)
.+..+|++|+.|.
T Consensus 621 ~~~~~i~~C~~L~ 633 (636)
T 4eco_A 621 DKTQDIRGCDALD 633 (636)
T ss_dssp CTTSEEESCGGGC
T ss_pred CCccccCCCcccc
Confidence 4556788888765
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.2e-25 Score=272.53 Aligned_cols=453 Identities=13% Similarity=0.141 Sum_probs=291.7
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC-cccCCCCCCcEEEccCCCCCCc--ccccCCCCCcE
Q 001200 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEI 182 (1125)
Q Consensus 106 ~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~ 182 (1125)
.+...+++++++|.+. .+|..++ ++|++|++++|.+..+| .+|..+++|++|+|++|.++.+ ..|+++++|++
T Consensus 29 ~~~~~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 29 SNELESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ----CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred ccCCCcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 4555689999999887 6887653 78999999999999886 6899999999999999998866 67899999999
Q ss_pred EEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCc-cccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCC
Q 001200 183 LSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLS 261 (1125)
Q Consensus 183 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 261 (1125)
||+++|.++.+|.. .+++|++|++++|. +..+|. ..++++++|++|++++|.+. ...+..+..+
T Consensus 105 L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~-----------~~~~~~l~~L- 169 (562)
T 3a79_B 105 LDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFR-----------QLDLLPVAHL- 169 (562)
T ss_dssp EECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCC-----------TTTTGGGTTS-
T ss_pred EECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccc-----------cCchhhhhhc-
Confidence 99999999999876 89999999999998 877652 34889999999999998876 2234444455
Q ss_pred CCCEEEeecCCC--ccc-CCccccccccEEEEE--eCCccc-----ccCCCCCceEEEEecccCC---hhH---HHhhhc
Q 001200 262 HLTTLEIQICDA--MIL-PKGLFSKKLERYKIF--IGDEWD-----WSGNYKNKRVLKLKLYTSN---VDE---VIMQLK 325 (1125)
Q Consensus 262 ~L~~L~l~~~~~--~~~-~~~~~~~~L~~l~l~--~~~~~~-----~~~~~~~l~~l~l~~~~~~---l~~---~~~~l~ 325 (1125)
+|+.|++++|.+ ... +..+..-..+.+.+. .+.... .......++.+++..+... ++. .+..++
T Consensus 170 ~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~ 249 (562)
T 3a79_B 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249 (562)
T ss_dssp CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS
T ss_pred eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC
Confidence 559999998876 333 222211111233332 222111 1223446677777664311 221 345667
Q ss_pred cccEEEccccCCcccccccc-cccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccccccceeccCccCcc
Q 001200 326 GIEELYLDEVPGIKNVLYDL-DIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAE 404 (1125)
Q Consensus 326 ~L~~L~L~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 404 (1125)
+++.|++.++....+.+..+ .....++|++|++++|.....++... + ....++|+.|.+.++..... .++..
T Consensus 250 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~-~--~~~~~~L~~L~~~~~~~~~~----~~p~~ 322 (562)
T 3a79_B 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE-F--TYSETALKSLMIEHVKNQVF----LFSKE 322 (562)
T ss_dssp SCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCC-C--CCCSCSCCEEEEEEEEECCC----SSCHH
T ss_pred cceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchh-h--hcccccchheehhhccccee----ecChh
Confidence 88888887654322211110 01123489999999886332332210 0 00125566666555432211 11110
Q ss_pred ------cccCccEEEeccCCCcCcccchhhhccCCcccEEecccccccchhhcccccCCccCCcccceecCccCEEeecC
Q 001200 405 ------SFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKF 478 (1125)
Q Consensus 405 ------~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 478 (1125)
...+|++|+++++. +... .....+++|++|+++++. +....+ .....+++|+.|++++
T Consensus 323 ~~~~~~~~~~L~~L~l~~n~-~~~~---~~~~~l~~L~~L~l~~n~-l~~~~~-----------~~~~~l~~L~~L~L~~ 386 (562)
T 3a79_B 323 ALYSVFAEMNIKMLSISDTP-FIHM---VCPPSPSSFTFLNFTQNV-FTDSVF-----------QGCSTLKRLQTLILQR 386 (562)
T ss_dssp HHHHHHHTCCCSEEEEESSC-CCCC---CCCSSCCCCCEEECCSSC-CCTTTT-----------TTCCSCSSCCEEECCS
T ss_pred hhhhhhccCcceEEEccCCC-cccc---cCccCCCCceEEECCCCc-cccchh-----------hhhcccCCCCEEECCC
Confidence 12568999999864 3333 223678899999999853 433221 1335688999999988
Q ss_pred CCcccccccccccccccccccceecccCCCcee-ecccccCcccccccccccccccceeeccccccccccccCcccccCC
Q 001200 479 LPQLTSFYSQVKTSAASQTRLKELSTHTLPREV-ILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQ 557 (1125)
Q Consensus 479 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~ 557 (1125)
+ .++.++.. ...+..+++|+.|++++|.... ++.. ....+++|+.|++++|.++...+..++ +
T Consensus 387 N-~l~~~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~----------~~~~l~~L~~L~l~~n~l~~~~~~~l~----~ 450 (562)
T 3a79_B 387 N-GLKNFFKV-ALMTKNMSSLETLDVSLNSLNSHAYDR----------TCAWAESILVLNLSSNMLTGSVFRCLP----P 450 (562)
T ss_dssp S-CCCBTTHH-HHTTTTCTTCCEEECTTSCCBSCCSSC----------CCCCCTTCCEEECCSSCCCGGGGSSCC----T
T ss_pred C-CcCCcccc-hhhhcCCCCCCEEECCCCcCCCccChh----------hhcCcccCCEEECCCCCCCcchhhhhc----C
Confidence 6 44443210 0135678899999999986432 2211 123478999999999997654332221 6
Q ss_pred CCcEEEEecCCCccccCCchhhhhccCCcEEEEeccccccceecccccccccceeecCccceeccccCCc
Q 001200 558 NLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSE 627 (1125)
Q Consensus 558 ~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 627 (1125)
+|+.|++++| +++.+ |..+. .+++|+.|++++|. ++.++....+ .+++|+.|++++++-
T Consensus 451 ~L~~L~L~~N-~l~~i-p~~~~-~l~~L~~L~L~~N~-l~~l~~~~~~-------~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 451 KVKVLDLHNN-RIMSI-PKDVT-HLQALQELNVASNQ-LKSVPDGVFD-------RLTSLQYIWLHDNPW 509 (562)
T ss_dssp TCSEEECCSS-CCCCC-CTTTT-SSCCCSEEECCSSC-CCCCCTTSTT-------TCTTCCCEECCSCCB
T ss_pred cCCEEECCCC-cCccc-Chhhc-CCCCCCEEECCCCC-CCCCCHHHHh-------cCCCCCEEEecCCCc
Confidence 8999999985 78876 55554 89999999999987 7777654111 678999999998763
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=4e-26 Score=283.17 Aligned_cols=38 Identities=8% Similarity=0.231 Sum_probs=29.3
Q ss_pred CCccEEEecCCCCCCCCChhhhcCCCCCcEEEe-ecCCcc
Q 001200 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLAL-SNMQFL 146 (1125)
Q Consensus 108 ~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~L-s~~~i~ 146 (1125)
.+++.|+|+++.+.+.+|+. |.++++|++|+| ++|.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~-l~~L~~L~~LdLss~N~ls 361 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSETV 361 (876)
T ss_dssp SCEEEEECTTTCCEEEECGG-GGGCTTCCEEESCCTTHHH
T ss_pred CCEEEEECccCCCCCcCchH-HhccccceEeeeccccccc
Confidence 57888888888887777754 588888888888 666543
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=6.6e-25 Score=259.28 Aligned_cols=346 Identities=18% Similarity=0.207 Sum_probs=249.8
Q ss_pred CCCCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEcc
Q 001200 85 LKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLD 164 (1125)
Q Consensus 85 ~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~ 164 (1125)
+.++++|++.++.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..++. ++.+++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 5689999999999998887558899999999999887 5665 7899999999999999998876 8999999999999
Q ss_pred CCCCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCcccccccc
Q 001200 165 RCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (1125)
Q Consensus 165 ~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~ 244 (1125)
+|.+..+..++++++|++|++++|.+..+| .++.+.+|++|++++ . +..++. ++++++|++|++++|.+.
T Consensus 121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~-~~~~~~--~~~l~~L~~L~l~~n~l~----- 190 (466)
T 1o6v_A 121 NNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-Q-VTDLKP--LANLTTLERLDISSNKVS----- 190 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-S-CCCCGG--GTTCTTCCEEECCSSCCC-----
T ss_pred CCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-c-ccCchh--hccCCCCCEEECcCCcCC-----
Confidence 999988877999999999999999988887 489999999999974 3 555554 889999999999998875
Q ss_pred ccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHHHhhh
Q 001200 245 LNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQL 324 (1125)
Q Consensus 245 ~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l 324 (1125)
.+..+..+++|++|++++|.+...++... +
T Consensus 191 --------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~------------------------------------------l 220 (466)
T 1o6v_A 191 --------DISVLAKLTNLESLIATNNQISDITPLGI------------------------------------------L 220 (466)
T ss_dssp --------CCGGGGGCTTCSEEECCSSCCCCCGGGGG------------------------------------------C
T ss_pred --------CChhhccCCCCCEEEecCCcccccccccc------------------------------------------c
Confidence 23458888999999999888655433212 3
Q ss_pred ccccEEEccccCCcccccccccccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccccccceeccCccCcc
Q 001200 325 KGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAE 404 (1125)
Q Consensus 325 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 404 (1125)
++|+.|+++++... . .+. +..+++|++|++++|... . ...+..+++|+.|++.++ .+..+ .+..
T Consensus 221 ~~L~~L~l~~n~l~-~-~~~--l~~l~~L~~L~l~~n~l~-~------~~~~~~l~~L~~L~l~~n-~l~~~----~~~~ 284 (466)
T 1o6v_A 221 TNLDELSLNGNQLK-D-IGT--LASLTNLTDLDLANNQIS-N------LAPLSGLTKLTELKLGAN-QISNI----SPLA 284 (466)
T ss_dssp TTCCEEECCSSCCC-C-CGG--GGGCTTCSEEECCSSCCC-C------CGGGTTCTTCSEEECCSS-CCCCC----GGGT
T ss_pred CCCCEEECCCCCcc-c-chh--hhcCCCCCEEECCCCccc-c------chhhhcCCCCCEEECCCC-ccCcc----cccc
Confidence 45555555554321 1 122 245667777777766521 1 122455666777777663 33322 1134
Q ss_pred cccCccEEEeccCCCcCcccchhhhccCCcccEEecccccccchhhcccccCCccCCcccceecCccCEEeecCCCcccc
Q 001200 405 SFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTS 484 (1125)
Q Consensus 405 ~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 484 (1125)
.+++|+.|++++| +++.+++ +..+++|++|++++| .+..+. ....+++|+.|++.++ .+++
T Consensus 285 ~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~-------------~~~~l~~L~~L~l~~n-~l~~ 345 (466)
T 1o6v_A 285 GLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFN-NISDIS-------------PVSSLTKLQRLFFYNN-KVSD 345 (466)
T ss_dssp TCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSS-CCSCCG-------------GGGGCTTCCEEECCSS-CCCC
T ss_pred CCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCC-cCCCch-------------hhccCccCCEeECCCC-ccCC
Confidence 6777888888774 4555543 567788888888875 344433 1346788888888876 4444
Q ss_pred cccccccccccccccceecccCCCceeecccccCcccccccccccccccceeeccccccccc
Q 001200 485 FYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKI 546 (1125)
Q Consensus 485 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 546 (1125)
++ .+..+++|+.|++++|+..... + ...+++|+.|++++|.++..
T Consensus 346 ~~-----~l~~l~~L~~L~l~~n~l~~~~--------~----~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 346 VS-----SLANLTNINWLSAGHNQISDLT--------P----LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CG-----GGTTCTTCCEEECCSSCCCBCG--------G----GTTCTTCCEEECCCEEEECC
T ss_pred ch-----hhccCCCCCEEeCCCCccCccc--------h----hhcCCCCCEEeccCCcccCC
Confidence 43 2667888888888888532111 1 44688999999999996653
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=4.4e-24 Score=252.21 Aligned_cols=347 Identities=21% Similarity=0.254 Sum_probs=272.1
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCcccccCCCCCcEEEc
Q 001200 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (1125)
Q Consensus 106 ~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~L 185 (1125)
.+++++.|++.++.+. .++. |..+++|++|++++|.+..+|. +..+++|++|++++|.+..+..++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEEC
Confidence 4678999999999876 5764 6889999999999999999876 9999999999999999998866999999999999
Q ss_pred cCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCE
Q 001200 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (1125)
Q Consensus 186 s~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 265 (1125)
++|.+..+|. ++++++|++|++++|. +..++. ++++++|++|+++++ +. ....++++++|+.
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~-~~-------------~~~~~~~l~~L~~ 181 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQ-VT-------------DLKPLANLTTLER 181 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEES-CC-------------CCGGGTTCTTCCE
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCc-cc-------------CchhhccCCCCCE
Confidence 9999999986 9999999999999998 888875 899999999999743 22 2345889999999
Q ss_pred EEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHHHhhhccccEEEccccCCcccccccc
Q 001200 266 LEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDL 345 (1125)
Q Consensus 266 L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 345 (1125)
|++++|.+..++. +..+++|+.|+++++... ...+
T Consensus 182 L~l~~n~l~~~~~------------------------------------------l~~l~~L~~L~l~~n~l~-~~~~-- 216 (466)
T 1o6v_A 182 LDISSNKVSDISV------------------------------------------LAKLTNLESLIATNNQIS-DITP-- 216 (466)
T ss_dssp EECCSSCCCCCGG------------------------------------------GGGCTTCSEEECCSSCCC-CCGG--
T ss_pred EECcCCcCCCChh------------------------------------------hccCCCCCEEEecCCccc-cccc--
Confidence 9999988654322 123567888888776432 2222
Q ss_pred cccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccccccceeccCccCcccccCccEEEeccCCCcCcccc
Q 001200 346 DIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFS 425 (1125)
Q Consensus 346 ~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~ 425 (1125)
+..+++|++|++++|. ++.+ ..+..+++|+.|++.++ .+... .+...+++|+.|++++| .++.+++
T Consensus 217 -~~~l~~L~~L~l~~n~-l~~~------~~l~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~l~~n-~l~~~~~ 282 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQ-LKDI------GTLASLTNLTDLDLANN-QISNL----APLSGLTKLTELKLGAN-QISNISP 282 (466)
T ss_dssp -GGGCTTCCEEECCSSC-CCCC------GGGGGCTTCSEEECCSS-CCCCC----GGGTTCTTCSEEECCSS-CCCCCGG
T ss_pred -ccccCCCCEEECCCCC-cccc------hhhhcCCCCCEEECCCC-ccccc----hhhhcCCCCCEEECCCC-ccCcccc
Confidence 3678999999999986 3222 34667899999999985 34333 22557899999999996 4666644
Q ss_pred hhhhccCCcccEEecccccccchhhcccccCCccCCcccceecCccCEEeecCCCcccccccccccccccccccceeccc
Q 001200 426 FSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTH 505 (1125)
Q Consensus 426 ~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 505 (1125)
+..+++|++|++++| .+..++ ....+++|+.|+++++. +.++.. +..+++|+.|+++
T Consensus 283 ---~~~l~~L~~L~L~~n-~l~~~~-------------~~~~l~~L~~L~L~~n~-l~~~~~-----~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 283 ---LAGLTALTNLELNEN-QLEDIS-------------PISNLKNLTYLTLYFNN-ISDISP-----VSSLTKLQRLFFY 339 (466)
T ss_dssp ---GTTCTTCSEEECCSS-CCSCCG-------------GGGGCTTCSEEECCSSC-CSCCGG-----GGGCTTCCEEECC
T ss_pred ---ccCCCccCeEEcCCC-cccCch-------------hhcCCCCCCEEECcCCc-CCCchh-----hccCccCCEeECC
Confidence 778999999999995 455554 24578999999999984 454443 5688999999999
Q ss_pred CCCceeecccccCcccccccccccccccceeeccccccccccccCcccccCCCCcEEEEecCCCcccc
Q 001200 506 TLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYL 573 (1125)
Q Consensus 506 ~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l 573 (1125)
+|..-.. .....+++|+.|++++|.+....+ + ..+++|+.|++++| .++.+
T Consensus 340 ~n~l~~~------------~~l~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~l~~n-~~~~~ 390 (466)
T 1o6v_A 340 NNKVSDV------------SSLANLTNINWLSAGHNQISDLTP--L--ANLTRITQLGLNDQ-AWTNA 390 (466)
T ss_dssp SSCCCCC------------GGGTTCTTCCEEECCSSCCCBCGG--G--TTCTTCCEEECCCE-EEECC
T ss_pred CCccCCc------------hhhccCCCCCEEeCCCCccCccch--h--hcCCCCCEEeccCC-cccCC
Confidence 9953211 234468999999999999776554 2 34899999999995 56654
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=4.5e-24 Score=252.06 Aligned_cols=155 Identities=25% Similarity=0.379 Sum_probs=91.7
Q ss_pred CCCCCCEEEeecCCCcccCC-CC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcE
Q 001200 84 MLKNCPTIFLHDCKHWEVPE-GL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQT 160 (1125)
Q Consensus 84 ~~~~l~~L~l~~n~~~~l~~-~~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~ 160 (1125)
..+++++|++++|.+..++. .+ ++++|++|++++|.+...++...|.++++|++|++++|.+..+ |..|+.+++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 44566666666666665533 23 5666666666666655455555566666666666666666654 556666666666
Q ss_pred EEccCCCCCC--cc--cccCCCCCcEEEccCCCCCCC-chh-hccCCCCCEEeecCCCCCCccCccccCCC--CCccEEE
Q 001200 161 LCLDRCALGD--IA--IIGNLKKLEILSLVDSNIEQL-PEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGL--SRLEDLY 232 (1125)
Q Consensus 161 L~L~~~~l~~--l~--~~~~L~~L~~L~Ls~~~i~~l-p~~-i~~L~~L~~L~L~~~~~l~~ip~~~l~~L--~~L~~L~ 232 (1125)
|++++|.+.. +. .++++.+|++|++++|.+..+ |.. ++++++|++|++++|. +..++...+..+ .+|+.|+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEE
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccc
Confidence 6666666654 22 266666666666666666655 333 5666666666666665 444433334433 4555565
Q ss_pred eecCccc
Q 001200 233 MGNTSVK 239 (1125)
Q Consensus 233 l~~~~~~ 239 (1125)
+++|.+.
T Consensus 187 l~~n~l~ 193 (455)
T 3v47_A 187 LSSITLQ 193 (455)
T ss_dssp CTTCBCT
T ss_pred cccCccc
Confidence 5555543
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.1e-24 Score=254.53 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=84.8
Q ss_pred CCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcc-ccCcccCCCCCC-------------cEEEccCCCC
Q 001200 103 EGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPSLFHLPLNL-------------QTLCLDRCAL 168 (1125)
Q Consensus 103 ~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~-~lp~~l~~l~~L-------------r~L~L~~~~l 168 (1125)
..+..+.|++|++++|.+ ..+|.. |+++++|++|++++|.+. .+|.+++.+++| ++|++++|.+
T Consensus 6 ~~~~~~~L~~L~l~~n~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 6 RNVSNTFLQEPLRHSSNL-TEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred cccccccchhhhcccCch-hhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 334556777777777777 477765 478888888888888776 577778777764 7777777777
Q ss_pred CCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCcccccccccccc
Q 001200 169 GDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVG 248 (1125)
Q Consensus 169 ~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 248 (1125)
+.++.+ ..+|++|++++|.++.+|.. +.+|++|++++|. +..+|.. .++|++|++++|.+.
T Consensus 84 ~~lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~----~~~L~~L~L~~n~l~--------- 144 (454)
T 1jl5_A 84 SSLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL----PPLLEYLGVSNNQLE--------- 144 (454)
T ss_dssp SCCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC----CTTCCEEECCSSCCS---------
T ss_pred ccCCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC----CCCCCEEECcCCCCC---------
Confidence 665432 36777888877777777743 3677778887776 6666542 157777887777665
Q ss_pred CCCCChhhhCCCCCCCEEEeecCCCcccC
Q 001200 249 RSNASLQELKLLSHLTTLEIQICDAMILP 277 (1125)
Q Consensus 249 ~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 277 (1125)
. +.+++++++|++|++++|.+..+|
T Consensus 145 --~--lp~~~~l~~L~~L~l~~N~l~~lp 169 (454)
T 1jl5_A 145 --K--LPELQNSSFLKIIDVDNNSLKKLP 169 (454)
T ss_dssp --S--CCCCTTCTTCCEEECCSSCCSCCC
T ss_pred --C--CcccCCCCCCCEEECCCCcCcccC
Confidence 1 224777777777777777765444
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=3.7e-24 Score=252.86 Aligned_cols=175 Identities=19% Similarity=0.260 Sum_probs=137.7
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcc-cc-CcccCCCCCCcEEEccCC
Q 001200 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SL-PSLFHLPLNLQTLCLDRC 166 (1125)
Q Consensus 89 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~-~l-p~~l~~l~~Lr~L~L~~~ 166 (1125)
+.++.+++.+..+|. + .++|++|++++|.+. .++...|.++++|++|++++|.+. .+ |.+|..+++|++|+|++|
T Consensus 13 ~~~~c~~~~l~~lp~-l-~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L-PAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC-C-CTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC-C-CCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 467777788888888 3 378999999999887 565666899999999999999886 55 567899999999999999
Q ss_pred CCCCc--ccccCCCCCcEEEccCCCCCC-Cchh--hccCCCCCEEeecCCCCCCcc-CccccCCCCCccEEEeecCcccc
Q 001200 167 ALGDI--AIIGNLKKLEILSLVDSNIEQ-LPEE--MAQLTQLRLFDLSGCSKLKVI-PPNLLSGLSRLEDLYMGNTSVKW 240 (1125)
Q Consensus 167 ~l~~l--~~~~~L~~L~~L~Ls~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~i-p~~~l~~L~~L~~L~l~~~~~~~ 240 (1125)
.+..+ ..++++.+|++|++++|.+.. +|.. ++++++|++|++++|. +..+ |...++++++|++|++++|.+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~- 167 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVK- 167 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBS-
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCccc-
Confidence 98855 678999999999999998885 4444 8899999999999998 7666 5444788999999999998876
Q ss_pred ccccccccCCCCChhhhCCC--CCCCEEEeecCCCcccCC
Q 001200 241 EFEGLNVGRSNASLQELKLL--SHLTTLEIQICDAMILPK 278 (1125)
Q Consensus 241 ~~~~~~~~~~~~~~~~L~~L--~~L~~L~l~~~~~~~~~~ 278 (1125)
......+..+ .+|+.|+++++.+..++.
T Consensus 168 ----------~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~ 197 (455)
T 3v47_A 168 ----------SICEEDLLNFQGKHFTLLRLSSITLQDMNE 197 (455)
T ss_dssp ----------CCCTTTSGGGTTCEEEEEECTTCBCTTCST
T ss_pred ----------ccChhhhhccccccccccccccCcccccch
Confidence 2223334433 468888888887655543
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.1e-23 Score=246.46 Aligned_cols=264 Identities=15% Similarity=0.130 Sum_probs=201.1
Q ss_pred CCCCCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEc
Q 001200 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (1125)
Q Consensus 84 ~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L 163 (1125)
.++++++|++++|.+..+|....+++|++|++++|.+. .++ |..+++|++|++++|.+..+| ++.+++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 46789999999999998875448999999999999887 465 688999999999999999886 889999999999
Q ss_pred cCCCCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccc
Q 001200 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (1125)
Q Consensus 164 ~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~ 243 (1125)
++|.++.++ ++.+++|++|++++|.++.+| ++++++|++|++++|..+..++ ++.+++|++|++++|.+.
T Consensus 114 ~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~---- 183 (457)
T 3bz5_A 114 DTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT---- 183 (457)
T ss_dssp CSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC----
T ss_pred CCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc----
Confidence 999988875 899999999999999999885 8899999999999997677774 789999999999999876
Q ss_pred cccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHHHhh
Q 001200 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQ 323 (1125)
Q Consensus 244 ~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~ 323 (1125)
. +. ++.+++|+.|++++|.+..++ + ..
T Consensus 184 -------~--l~-l~~l~~L~~L~l~~N~l~~~~--l-----------------------------------------~~ 210 (457)
T 3bz5_A 184 -------E--LD-VSQNKLLNRLNCDTNNITKLD--L-----------------------------------------NQ 210 (457)
T ss_dssp -------C--CC-CTTCTTCCEEECCSSCCSCCC--C-----------------------------------------TT
T ss_pred -------e--ec-cccCCCCCEEECcCCcCCeec--c-----------------------------------------cc
Confidence 1 22 778889999999998875442 1 12
Q ss_pred hccccEEEccccCCcccccccccccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccccccceeccCccCc
Q 001200 324 LKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRA 403 (1125)
Q Consensus 324 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 403 (1125)
+++|+.|+++++.... ++ +..+++|++|++++|.. +.+ ....+++|+.|++.+
T Consensus 211 l~~L~~L~Ls~N~l~~--ip---~~~l~~L~~L~l~~N~l-~~~-------~~~~l~~L~~L~l~~-------------- 263 (457)
T 3bz5_A 211 NIQLTFLDCSSNKLTE--ID---VTPLTQLTYFDCSVNPL-TEL-------DVSTLSKLTTLHCIQ-------------- 263 (457)
T ss_dssp CTTCSEEECCSSCCSC--CC---CTTCTTCSEEECCSSCC-SCC-------CCTTCTTCCEEECTT--------------
T ss_pred CCCCCEEECcCCcccc--cC---ccccCCCCEEEeeCCcC-CCc-------CHHHCCCCCEEeccC--------------
Confidence 4567777776654322 22 36778888888888752 211 134466666665543
Q ss_pred ccccCccEEEeccCCCcCcccchhhhccCCcccEEecccccccchhh
Q 001200 404 ESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIF 450 (1125)
Q Consensus 404 ~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~ 450 (1125)
.+|+.|++++|..+..+| .+.+++|+.|++++|..+..++
T Consensus 264 ---n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 264 ---TDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp ---CCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEE
T ss_pred ---CCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceec
Confidence 245666677766555543 3456777777777776666555
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=4.1e-23 Score=241.45 Aligned_cols=315 Identities=17% Similarity=0.175 Sum_probs=223.8
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCcccccCCCCCcEEEc
Q 001200 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (1125)
Q Consensus 106 ~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~L 185 (1125)
.+++|++|++++|.+. .+| .|..+++|++|++++|.+..+| ++.+++|++|++++|.++.++ ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 5789999999999887 566 3689999999999999999886 889999999999999988875 889999999999
Q ss_pred cCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCE
Q 001200 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (1125)
Q Consensus 186 s~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 265 (1125)
++|.+..+| ++++++|++|++++|. +..++ ++.+++|++|++++|... . .+ .++.+++|+.
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~-----------~-~~-~~~~l~~L~~ 174 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKI-----------T-KL-DVTPQTQLTT 174 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCC-----------C-CC-CCTTCTTCCE
T ss_pred CCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCcc-----------c-cc-ccccCCcCCE
Confidence 999999886 8999999999999998 88875 789999999999988533 1 11 4778899999
Q ss_pred EEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHHHhhhccccEEEccccCCcccccccc
Q 001200 266 LEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDL 345 (1125)
Q Consensus 266 L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 345 (1125)
|++++|.+..++ + ..+++|+.|+++++.... +
T Consensus 175 L~ls~n~l~~l~--l-----------------------------------------~~l~~L~~L~l~~N~l~~-----~ 206 (457)
T 3bz5_A 175 LDCSFNKITELD--V-----------------------------------------SQNKLLNRLNCDTNNITK-----L 206 (457)
T ss_dssp EECCSSCCCCCC--C-----------------------------------------TTCTTCCEEECCSSCCSC-----C
T ss_pred EECCCCccceec--c-----------------------------------------ccCCCCCEEECcCCcCCe-----e
Confidence 999998875543 1 124466777776653221 1
Q ss_pred cccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccccccceeccCccCcccccCccEEEeccCCCcCcccc
Q 001200 346 DIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFS 425 (1125)
Q Consensus 346 ~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~ 425 (1125)
.+..+++|++|++++|.. +.+ +...+++|+.|++.++ .++.+ +.+.+++|+.|++++
T Consensus 207 ~l~~l~~L~~L~Ls~N~l-~~i-------p~~~l~~L~~L~l~~N-~l~~~-----~~~~l~~L~~L~l~~--------- 263 (457)
T 3bz5_A 207 DLNQNIQLTFLDCSSNKL-TEI-------DVTPLTQLTYFDCSVN-PLTEL-----DVSTLSKLTTLHCIQ--------- 263 (457)
T ss_dssp CCTTCTTCSEEECCSSCC-SCC-------CCTTCTTCSEEECCSS-CCSCC-----CCTTCTTCCEEECTT---------
T ss_pred ccccCCCCCEEECcCCcc-ccc-------CccccCCCCEEEeeCC-cCCCc-----CHHHCCCCCEEeccC---------
Confidence 246778888888888752 212 1445666777777663 33322 233556666665543
Q ss_pred hhhhccCCcccEEecccccccchhhcccccCCccCCcccceecCccCEEeecCCCcccccccccccccccccccceeccc
Q 001200 426 FSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTH 505 (1125)
Q Consensus 426 ~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 505 (1125)
.+|+.|++++|..+..++ ...+++|+.|++++++.+..++. ..++|+.|+++
T Consensus 264 -------n~L~~L~l~~n~~~~~~~--------------~~~l~~L~~L~Ls~n~~l~~l~~-------~~~~L~~L~l~ 315 (457)
T 3bz5_A 264 -------TDLLEIDLTHNTQLIYFQ--------------AEGCRKIKELDVTHNTQLYLLDC-------QAAGITELDLS 315 (457)
T ss_dssp -------CCCSCCCCTTCTTCCEEE--------------CTTCTTCCCCCCTTCTTCCEEEC-------TTCCCSCCCCT
T ss_pred -------CCCCEEECCCCccCCccc--------------ccccccCCEEECCCCcccceecc-------CCCcceEechh
Confidence 245566666665544443 13467778888877776666553 23455666555
Q ss_pred CCCceeecccccCcccccccccccccccceeeccccccccccccCcccccCCCCcEEEEecCCCcccc
Q 001200 506 TLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYL 573 (1125)
Q Consensus 506 ~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l 573 (1125)
+| ++|+.|++++|.++.+. + ..+++|+.|++++ ++++.+
T Consensus 316 ~~-----------------------~~L~~L~L~~N~l~~l~---l--~~l~~L~~L~l~~-N~l~~l 354 (457)
T 3bz5_A 316 QN-----------------------PKLVYLYLNNTELTELD---V--SHNTKLKSLSCVN-AHIQDF 354 (457)
T ss_dssp TC-----------------------TTCCEEECTTCCCSCCC---C--TTCTTCSEEECCS-SCCCBC
T ss_pred hc-----------------------ccCCEEECCCCcccccc---c--ccCCcCcEEECCC-CCCCCc
Confidence 43 46777888888766642 2 2367788888877 556553
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.9e-23 Score=235.46 Aligned_cols=172 Identities=16% Similarity=0.237 Sum_probs=122.8
Q ss_pred CCCCCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEc
Q 001200 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (1125)
Q Consensus 84 ~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L 163 (1125)
.++++++|+++++.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..+| ++..+++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 46678888888888877766447778888888877765 4554 677788888888888777765 5777788888888
Q ss_pred cCCCCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccc
Q 001200 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (1125)
Q Consensus 164 ~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~ 243 (1125)
++|.+..+..+..+++|++|++++|.....+..++.+++|++|++++|. +..++. ++.+++|++|++++|.+.
T Consensus 118 ~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~---- 190 (347)
T 4fmz_A 118 NEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIE---- 190 (347)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCC----
T ss_pred cCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccc----
Confidence 8877777755777778888888777444334457777778888887776 666655 677777777777777654
Q ss_pred cccccCCCCChhhhCCCCCCCEEEeecCCCcc
Q 001200 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMI 275 (1125)
Q Consensus 244 ~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~ 275 (1125)
.+..+..+++|+.|++++|.+..
T Consensus 191 ---------~~~~~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 191 ---------DISPLASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp ---------CCGGGGGCTTCCEEECCSSCCCC
T ss_pred ---------ccccccCCCccceeecccCCCCC
Confidence 12236677777777777766543
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=5e-24 Score=248.97 Aligned_cols=179 Identities=19% Similarity=0.161 Sum_probs=119.8
Q ss_pred CCCCCEEEeecCCCcccCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCC-------------cEEEeecCCccccCc
Q 001200 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNL-------------RGLALSNMQFLSLPS 150 (1125)
Q Consensus 85 ~~~l~~L~l~~n~~~~l~~~~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~L-------------r~L~Ls~~~i~~lp~ 150 (1125)
...++.+++++|.+.++|..+ ++++|++|++++|.+.+.+|.. ++++++| ++|++++|.++.+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 568999999999999999887 8999999999998877667765 4666654 999999999998886
Q ss_pred ccCCCCCCcEEEccCCCCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccE
Q 001200 151 LFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLED 230 (1125)
Q Consensus 151 ~l~~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~ 230 (1125)
. .++|++|++++|.++.++. .+.+|++|++++|.+..+|.. ..+|++|++++|. +..+| + ++++++|++
T Consensus 89 ~---~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~-~~~l~~L~~ 157 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-E-LQNSSFLKI 157 (454)
T ss_dssp C---CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-C-CTTCTTCCE
T ss_pred C---cCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-c-cCCCCCCCE
Confidence 3 4789999999999887743 248899999999998887742 2689999999998 88898 4 899999999
Q ss_pred EEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEE
Q 001200 231 LYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKI 290 (1125)
Q Consensus 231 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l 290 (1125)
|++++|.+.. .+. ...+|++|++++|.+..+|....+.+|+.+++
T Consensus 158 L~l~~N~l~~------------lp~---~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l 202 (454)
T 1jl5_A 158 IDVDNNSLKK------------LPD---LPPSLEFIAAGNNQLEELPELQNLPFLTAIYA 202 (454)
T ss_dssp EECCSSCCSC------------CCC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEEC
T ss_pred EECCCCcCcc------------cCC---CcccccEEECcCCcCCcCccccCCCCCCEEEC
Confidence 9999998761 111 12489999999998876653223344444433
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=6.9e-23 Score=232.40 Aligned_cols=303 Identities=18% Similarity=0.248 Sum_probs=213.2
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCcccccCCCCCcEEEc
Q 001200 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (1125)
Q Consensus 106 ~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~L 185 (1125)
.+++|++|+++++.+. .++. |..+++|++|++++|.+..+|. +..+++|++|++++|.+..++.+.++++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEEC
Confidence 5678888888888775 5553 6778888888888888887765 7888888888888888887777888888888888
Q ss_pred cCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCE
Q 001200 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (1125)
Q Consensus 186 s~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 265 (1125)
++|.+..+|. +..+++|++|++++|..+..++. +..+++|++|++++|.+. ....+..+++|+.
T Consensus 118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~-------------~~~~~~~l~~L~~ 181 (347)
T 4fmz_A 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK-------------DVTPIANLTDLYS 181 (347)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC-------------CCGGGGGCTTCSE
T ss_pred cCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcC-------------CchhhccCCCCCE
Confidence 8888888776 78888888888888865665554 788888888888887765 2223777888888
Q ss_pred EEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHHHhhhccccEEEccccCCcccccccc
Q 001200 266 LEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDL 345 (1125)
Q Consensus 266 L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 345 (1125)
|++++|.+..++....+.+|+.+.+..+.. ..+.. +..+++|+.|+++++... ...+
T Consensus 182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l-------------------~~~~~-~~~~~~L~~L~l~~n~l~-~~~~-- 238 (347)
T 4fmz_A 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQI-------------------TDITP-VANMTRLNSLKIGNNKIT-DLSP-- 238 (347)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCC-------------------CCCGG-GGGCTTCCEEECCSSCCC-CCGG--
T ss_pred EEccCCcccccccccCCCccceeecccCCC-------------------CCCch-hhcCCcCCEEEccCCccC-CCcc--
Confidence 888888877666533566666666544332 11111 345677888888776432 2222
Q ss_pred cccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccccccceeccCccCcccccCccEEEeccCCCcCcccc
Q 001200 346 DIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFS 425 (1125)
Q Consensus 346 ~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~ 425 (1125)
+..+++|++|++++|. +..+ ..+..+++|+.|++.++ .+..+ .....+++|+.|++++|. ++..++
T Consensus 239 -~~~l~~L~~L~l~~n~-l~~~------~~~~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~L~~n~-l~~~~~ 304 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQ-ISDI------NAVKDLTKLKMLNVGSN-QISDI----SVLNNLSQLNSLFLNNNQ-LGNEDM 304 (347)
T ss_dssp -GTTCTTCCEEECCSSC-CCCC------GGGTTCTTCCEEECCSS-CCCCC----GGGGGCTTCSEEECCSSC-CCGGGH
T ss_pred -hhcCCCCCEEECCCCc-cCCC------hhHhcCCCcCEEEccCC-ccCCC----hhhcCCCCCCEEECcCCc-CCCcCh
Confidence 3677888888888875 2221 33566778888888775 44443 123567888899988864 555443
Q ss_pred hhhhccCCcccEEecccccccchhhcccccCCccCCcccceecCccCEEeecCCC
Q 001200 426 FSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLP 480 (1125)
Q Consensus 426 ~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 480 (1125)
..+..+++|++|++++|+ +..++ ....+++|+.|++++++
T Consensus 305 -~~l~~l~~L~~L~L~~n~-l~~~~-------------~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 305 -EVIGGLTNLTTLFLSQNH-ITDIR-------------PLASLSKMDSADFANQV 344 (347)
T ss_dssp -HHHHTCTTCSEEECCSSS-CCCCG-------------GGGGCTTCSEESSSCC-
T ss_pred -hHhhccccCCEEEccCCc-ccccc-------------Chhhhhccceeehhhhc
Confidence 446788889999998865 55554 23568888998888864
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=8.8e-23 Score=235.38 Aligned_cols=303 Identities=15% Similarity=0.178 Sum_probs=144.3
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC-cccCCCCCCcEEEccCCCCCCc--ccccCCCCCcE
Q 001200 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEI 182 (1125)
Q Consensus 106 ~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~ 182 (1125)
.++++++|++.++.+. .+|..+|.++++|++|++++|.+..++ .+|..+++|++|++++|.+..+ ..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3445555555554443 445444555555555555555555443 2455555555555555554433 33455555555
Q ss_pred EEccCCCCCCCchh-hccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCC
Q 001200 183 LSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLS 261 (1125)
Q Consensus 183 L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 261 (1125)
|++++|.+..+|.. ++++++|++|++++|. +..++...++++++|++|++++|.+. .. .++.++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~---~~~~l~ 186 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT-----------HV---DLSLIP 186 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCS-----------BC---CGGGCT
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCC-----------cc---cccccc
Confidence 55555555555443 2455555555555554 44444433455555555555555443 00 233344
Q ss_pred CCCEEEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHHHhhhccccEEEccccCCcccc
Q 001200 262 HLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNV 341 (1125)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~ 341 (1125)
+|+.|++++|.+..++. ...|+.+++..+.+. .++. ...++|+.|+++++....
T Consensus 187 ~L~~L~l~~n~l~~~~~---~~~L~~L~l~~n~l~-------------------~~~~--~~~~~L~~L~l~~n~l~~-- 240 (390)
T 3o6n_A 187 SLFHANVSYNLLSTLAI---PIAVEELDASHNSIN-------------------VVRG--PVNVELTILKLQHNNLTD-- 240 (390)
T ss_dssp TCSEEECCSSCCSEEEC---CSSCSEEECCSSCCC-------------------EEEC--CCCSSCCEEECCSSCCCC--
T ss_pred ccceeecccccccccCC---CCcceEEECCCCeee-------------------eccc--cccccccEEECCCCCCcc--
Confidence 45555555544332211 112333322211110 0000 012356666665543221
Q ss_pred cccccccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccccccceeccCccCcccccCccEEEeccCCCcC
Q 001200 342 LYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLK 421 (1125)
Q Consensus 342 ~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~ 421 (1125)
.+. +..+++|++|++++|......+ ..+..+++|+.|++.++ .+..+. .....+++|++|++++| +++
T Consensus 241 ~~~--l~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~---~~~~~l~~L~~L~L~~n-~l~ 308 (390)
T 3o6n_A 241 TAW--LLNYPGLVEVDLSYNELEKIMY-----HPFVKMQRLERLYISNN-RLVALN---LYGQPIPTLKVLDLSHN-HLL 308 (390)
T ss_dssp CGG--GGGCTTCSEEECCSSCCCEEES-----GGGTTCSSCCEEECCSS-CCCEEE---CSSSCCTTCCEEECCSS-CCC
T ss_pred cHH--HcCCCCccEEECCCCcCCCcCh-----hHccccccCCEEECCCC-cCcccC---cccCCCCCCCEEECCCC-cce
Confidence 122 3566777777777765222111 12345566666666663 344331 11235667777777764 455
Q ss_pred cccchhhhccCCcccEEecccccccchhhcccccCCccCCcccceecCccCEEeecCC
Q 001200 422 NIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFL 479 (1125)
Q Consensus 422 ~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 479 (1125)
.++. .+..+++|++|+++++. +..++ ...+++|+.|+++++
T Consensus 309 ~~~~--~~~~l~~L~~L~L~~N~-i~~~~--------------~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 309 HVER--NQPQFDRLENLYLDHNS-IVTLK--------------LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCGG--GHHHHTTCSEEECCSSC-CCCCC--------------CCTTCCCSEEECCSS
T ss_pred ecCc--cccccCcCCEEECCCCc-cceeC--------------chhhccCCEEEcCCC
Confidence 5543 24556677777776632 33332 234556666666654
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.5e-22 Score=233.35 Aligned_cols=308 Identities=15% Similarity=0.135 Sum_probs=226.1
Q ss_pred CCCCCcEEEeecCCccccCcc-cCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEE
Q 001200 131 GMSNLRGLALSNMQFLSLPSL-FHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLF 206 (1125)
Q Consensus 131 ~l~~Lr~L~Ls~~~i~~lp~~-l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L 206 (1125)
.+.++++|+++++.+..+|.. +..+++|++|++++|.+..+ ..++.+++|++|++++|.+..+|. .++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 468999999999999999865 68899999999999999876 589999999999999999998864 68999999999
Q ss_pred eecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCcccccccc
Q 001200 207 DLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLE 286 (1125)
Q Consensus 207 ~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~ 286 (1125)
++++|. +..+|.++++++++|++|++++|.+. ......++.+++|++|++++|.+..++..
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------- 183 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLE-----------RIEDDTFQATTSLQNLQLSSNRLTHVDLS------- 183 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-----------BCCTTTTSSCTTCCEEECCSSCCSBCCGG-------
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccC-----------ccChhhccCCCCCCEEECCCCcCCccccc-------
Confidence 999998 99999987799999999999999886 33455688999999999999987654321
Q ss_pred EEEEEeCCcccccCCCCCceEEEEecccCChhHHHhhhccccEEEccccCCcccccccccccccccCcEEEeecCCCeeE
Q 001200 287 RYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILF 366 (1125)
Q Consensus 287 ~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~ 366 (1125)
.+++|+.|+++++... .+ ...++|++|++++|. +..
T Consensus 184 ------------------------------------~l~~L~~L~l~~n~l~-----~~--~~~~~L~~L~l~~n~-l~~ 219 (390)
T 3o6n_A 184 ------------------------------------LIPSLFHANVSYNLLS-----TL--AIPIAVEELDASHNS-INV 219 (390)
T ss_dssp ------------------------------------GCTTCSEEECCSSCCS-----EE--ECCSSCSEEECCSSC-CCE
T ss_pred ------------------------------------cccccceeeccccccc-----cc--CCCCcceEEECCCCe-eee
Confidence 1345555555543211 11 233567777777765 222
Q ss_pred eeeCCcccccccccccceeecccccccceeccCccCcccccCccEEEeccCCCcCcccchhhhccCCcccEEeccccccc
Q 001200 367 IVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNM 446 (1125)
Q Consensus 367 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 446 (1125)
++ ...+++|+.|++.++ .+... .....+++|++|+++++ .++..++ ..+..+++|++|+++++ .+
T Consensus 220 ~~-------~~~~~~L~~L~l~~n-~l~~~----~~l~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l 284 (390)
T 3o6n_A 220 VR-------GPVNVELTILKLQHN-NLTDT----AWLLNYPGLVEVDLSYN-ELEKIMY-HPFVKMQRLERLYISNN-RL 284 (390)
T ss_dssp EE-------CCCCSSCCEEECCSS-CCCCC----GGGGGCTTCSEEECCSS-CCCEEES-GGGTTCSSCCEEECCSS-CC
T ss_pred cc-------ccccccccEEECCCC-CCccc----HHHcCCCCccEEECCCC-cCCCcCh-hHccccccCCEEECCCC-cC
Confidence 21 123467777777764 33322 22346788888888885 4665544 34778888888888884 45
Q ss_pred chhhcccccCCccCCcccceecCccCEEeecCCCcccccccccccccccccccceecccCCCceeecccccCcccccccc
Q 001200 447 KEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNE 526 (1125)
Q Consensus 447 ~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 526 (1125)
..++. ....+++|+.|+++++ .++.++. .+..+++|+.|++++|+....+
T Consensus 285 ~~~~~------------~~~~l~~L~~L~L~~n-~l~~~~~----~~~~l~~L~~L~L~~N~i~~~~------------- 334 (390)
T 3o6n_A 285 VALNL------------YGQPIPTLKVLDLSHN-HLLHVER----NQPQFDRLENLYLDHNSIVTLK------------- 334 (390)
T ss_dssp CEEEC------------SSSCCTTCCEEECCSS-CCCCCGG----GHHHHTTCSEEECCSSCCCCCC-------------
T ss_pred cccCc------------ccCCCCCCCEEECCCC-cceecCc----cccccCcCCEEECCCCccceeC-------------
Confidence 55441 1245788888888887 4555543 2567888999999988632211
Q ss_pred cccccccceeeccccccccc
Q 001200 527 KVVFPNLETLELCAISTEKI 546 (1125)
Q Consensus 527 ~~~~~~L~~L~l~~~~l~~~ 546 (1125)
...+++|+.|++++|++...
T Consensus 335 ~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 335 LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCTTCCCSEEECCSSCEEHH
T ss_pred chhhccCCEEEcCCCCccch
Confidence 34588999999999996554
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=3.1e-22 Score=237.67 Aligned_cols=176 Identities=22% Similarity=0.325 Sum_probs=127.9
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccCCC
Q 001200 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (1125)
Q Consensus 89 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~~ 167 (1125)
+.++.+++.+..+|..+. +.+++|++++|.+. .++...|.++++|++|+|++|.+..+ |.+|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP-TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCC-TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC-CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 456666777777776653 57778888877776 56556677788888888888877766 6677788888888888887
Q ss_pred CCCc--ccccCCCCCcEEEccCCCCCCC-chhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCcccccccc
Q 001200 168 LGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (1125)
Q Consensus 168 l~~l--~~~~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~ 244 (1125)
+..+ ..|+++.+|++|++++|.+..+ |..+.++.+|++|++++|. +..++...+.++++|++|++++|.+.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~----- 165 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLT----- 165 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCS-----
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCc-----
Confidence 7766 4567788888888888877755 4567778888888888777 66666555778888888888877765
Q ss_pred ccccCCCCChhhhCCCCCCCEEEeecCCCcccCC
Q 001200 245 LNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (1125)
Q Consensus 245 ~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~ 278 (1125)
......+..+++|+.|++++|.+..++.
T Consensus 166 ------~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 166 ------SIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp ------SCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred ------ccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 2334557777888888888777655444
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=4.3e-22 Score=242.52 Aligned_cols=282 Identities=15% Similarity=0.180 Sum_probs=157.6
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC-cccCCCCCCcEEEccCCCCCCc--ccccCCCCCcE
Q 001200 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEI 182 (1125)
Q Consensus 106 ~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~ 182 (1125)
.+++++.|++.+|.+. .+|..+|.++++|++|++++|.+..+| .+|+.+++|++|+|++|.+..+ ..|+++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4566666666666654 566666666677777777777666653 3666667777777777766654 34566777777
Q ss_pred EEccCCCCCCCchh-hccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCC
Q 001200 183 LSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLS 261 (1125)
Q Consensus 183 L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 261 (1125)
|+|++|.+..+|.. |+++++|++|++++|. +..++...++++++|++|++++|.+. .. .++.++
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~---~~~~l~ 192 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT-----------HV---DLSLIP 192 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCS-----------BC---CGGGCT
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCC-----------Cc---Chhhhh
Confidence 77777766666654 4666777777777666 55555554666677777777666654 11 244456
Q ss_pred CCCEEEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHHHhhhccccEEEccccCCcccc
Q 001200 262 HLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNV 341 (1125)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~ 341 (1125)
+|+.|++++|.+..++. ...|+.+++..+.+.. ++. ...++|+.|+++++....
T Consensus 193 ~L~~L~l~~n~l~~l~~---~~~L~~L~ls~n~l~~-------------------~~~--~~~~~L~~L~L~~n~l~~-- 246 (597)
T 3oja_B 193 SLFHANVSYNLLSTLAI---PIAVEELDASHNSINV-------------------VRG--PVNVELTILKLQHNNLTD-- 246 (597)
T ss_dssp TCSEEECCSSCCSEEEC---CTTCSEEECCSSCCCE-------------------EEC--SCCSCCCEEECCSSCCCC--
T ss_pred hhhhhhcccCccccccC---CchhheeeccCCcccc-------------------ccc--ccCCCCCEEECCCCCCCC--
Confidence 66666666665543321 1233333332222100 000 012356666666543321
Q ss_pred cccccccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccccccceeccCccCcccccCccEEEeccCCCcC
Q 001200 342 LYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLK 421 (1125)
Q Consensus 342 ~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~ 421 (1125)
.+. +..+++|++|++++|......+ ..+..+++|+.|++++ +.+..+. .....+++|+.|++++| .+.
T Consensus 247 ~~~--l~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls~-N~l~~l~---~~~~~l~~L~~L~Ls~N-~l~ 314 (597)
T 3oja_B 247 TAW--LLNYPGLVEVDLSYNELEKIMY-----HPFVKMQRLERLYISN-NRLVALN---LYGQPIPTLKVLDLSHN-HLL 314 (597)
T ss_dssp CGG--GGGCTTCSEEECCSSCCCEEES-----GGGTTCSSCCEEECTT-SCCCEEE---CSSSCCTTCCEEECCSS-CCC
T ss_pred Chh--hccCCCCCEEECCCCccCCCCH-----HHhcCccCCCEEECCC-CCCCCCC---cccccCCCCcEEECCCC-CCC
Confidence 122 2566777777777765322211 1244556666666666 3344331 11234666777777664 344
Q ss_pred cccchhhhccCCcccEEecccc
Q 001200 422 NIFSFSFVRGLPQLQTLNVINC 443 (1125)
Q Consensus 422 ~l~~~~~~~~l~~L~~L~l~~c 443 (1125)
.+|. .+..+++|++|++++|
T Consensus 315 ~i~~--~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 315 HVER--NQPQFDRLENLYLDHN 334 (597)
T ss_dssp CCGG--GHHHHTTCSEEECCSS
T ss_pred ccCc--ccccCCCCCEEECCCC
Confidence 5543 2455666666666664
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.7e-21 Score=231.34 Aligned_cols=306 Identities=19% Similarity=0.237 Sum_probs=226.2
Q ss_pred ecCCCccCCCcccCCCCCCEEEeecCCCcccCCC-C-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc
Q 001200 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (1125)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~-~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l 148 (1125)
..+.+...+|. ....++++|++++|.+..++.. + ++++|++|++++|.+. .++...|.++++|++|+|++|.+..+
T Consensus 18 c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 95 (477)
T 2id5_A 18 CHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLI 95 (477)
T ss_dssp CCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred eCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCcc
Confidence 34445555553 5678999999999999988654 3 8999999999999887 56667789999999999999999999
Q ss_pred Cc-ccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCC-chhhccCCCCCEEeecCCCCCCccCccccCC
Q 001200 149 PS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSG 224 (1125)
Q Consensus 149 p~-~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~ 224 (1125)
|. .|..+++|++|+|++|.+..+ ..+.++.+|++|++++|.+..+ |..|+.+.+|++|++++|. +..+|...+.+
T Consensus 96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~ 174 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSH 174 (477)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTT
T ss_pred CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcc
Confidence 75 579999999999999999866 6799999999999999999877 4579999999999999998 99999887999
Q ss_pred CCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCC-cccCCcc-ccccccEEEEEeCCcccccCCC
Q 001200 225 LSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA-MILPKGL-FSKKLERYKIFIGDEWDWSGNY 302 (1125)
Q Consensus 225 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~-~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~ 302 (1125)
+++|++|++++|.+. ......+..+++|+.|++++|.. ..++... ..
T Consensus 175 l~~L~~L~l~~n~i~-----------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-------------------- 223 (477)
T 2id5_A 175 LHGLIVLRLRHLNIN-----------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-------------------- 223 (477)
T ss_dssp CTTCCEEEEESCCCC-----------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT--------------------
T ss_pred cCCCcEEeCCCCcCc-----------EeChhhcccCcccceeeCCCCccccccCcccccC--------------------
Confidence 999999999999876 23345688899999999998764 3333322 11
Q ss_pred CCceEEEEecccCChhHHHhhhccccEEEccccCCcccccccccccccccCcEEEeecCCCeeEeeeCCccccccccccc
Q 001200 303 KNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLL 382 (1125)
Q Consensus 303 ~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L 382 (1125)
.+|+.|+++++.. +. .+...+..+++|++|++++|. +..++. ..+..+++|
T Consensus 224 ----------------------~~L~~L~l~~n~l-~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~----~~~~~l~~L 274 (477)
T 2id5_A 224 ----------------------LNLTSLSITHCNL-TA-VPYLAVRHLVYLRFLNLSYNP-ISTIEG----SMLHELLRL 274 (477)
T ss_dssp ----------------------CCCSEEEEESSCC-CS-CCHHHHTTCTTCCEEECCSSC-CCEECT----TSCTTCTTC
T ss_pred ----------------------ccccEEECcCCcc-cc-cCHHHhcCccccCeeECCCCc-CCccCh----hhccccccC
Confidence 2444555544322 11 121123456666666666665 222211 123456667
Q ss_pred ceeecccccccceeccCccCcccccCccEEEeccCCCcCcccchhhhccCCcccEEeccccc
Q 001200 383 ESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCK 444 (1125)
Q Consensus 383 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 444 (1125)
+.|++.++ .+..+. ......+++|+.|+++++ +++.++. ..+..+++|++|++++++
T Consensus 275 ~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 275 QEIQLVGG-QLAVVE--PYAFRGLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CEEECCSS-CCSEEC--TTTBTTCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred CEEECCCC-ccceEC--HHHhcCcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccCCC
Confidence 77777663 344332 122346788888888884 5777665 456788899999998854
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=9.4e-22 Score=239.51 Aligned_cols=307 Identities=15% Similarity=0.138 Sum_probs=226.6
Q ss_pred CCCCCcEEEeecCCccccCcc-cCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEE
Q 001200 131 GMSNLRGLALSNMQFLSLPSL-FHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLF 206 (1125)
Q Consensus 131 ~l~~Lr~L~Ls~~~i~~lp~~-l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L 206 (1125)
.+.++++|+++++.+..+|.. +..+++|++|+|++|.+..+ ..|+.+.+|++|+|++|.+..+|. .|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467899999999999999764 68899999999999999876 589999999999999999998875 57999999999
Q ss_pred eecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCcccccccc
Q 001200 207 DLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLE 286 (1125)
Q Consensus 207 ~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~ 286 (1125)
++++|. +..+|.++++++++|++|++++|.+. ...+..++.+++|++|++++|.+..++..
T Consensus 129 ~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------- 189 (597)
T 3oja_B 129 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLE-----------RIEDDTFQATTSLQNLQLSSNRLTHVDLS------- 189 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-----------BCCTTTTTTCTTCCEEECTTSCCSBCCGG-------
T ss_pred EeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCC-----------CCChhhhhcCCcCcEEECcCCCCCCcChh-------
Confidence 999998 99999987799999999999999886 33455788999999999999987654321
Q ss_pred EEEEEeCCcccccCCCCCceEEEEecccCChhHHHhhhccccEEEccccCCcccccccccccccccCcEEEeecCCCeeE
Q 001200 287 RYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILF 366 (1125)
Q Consensus 287 ~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~ 366 (1125)
.+++|+.|+++++.. ..+ ...++|++|++++|. +..
T Consensus 190 ------------------------------------~l~~L~~L~l~~n~l-----~~l--~~~~~L~~L~ls~n~-l~~ 225 (597)
T 3oja_B 190 ------------------------------------LIPSLFHANVSYNLL-----STL--AIPIAVEELDASHNS-INV 225 (597)
T ss_dssp ------------------------------------GCTTCSEEECCSSCC-----SEE--ECCTTCSEEECCSSC-CCE
T ss_pred ------------------------------------hhhhhhhhhcccCcc-----ccc--cCCchhheeeccCCc-ccc
Confidence 234555566554321 111 234567777777775 222
Q ss_pred eeeCCcccccccccccceeecccccccceeccCccCcccccCccEEEeccCCCcCcccchhhhccCCcccEEeccccccc
Q 001200 367 IVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNM 446 (1125)
Q Consensus 367 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 446 (1125)
++ ...+++|+.|++.++ .+... ...+.+++|+.|+++++ .+..+++ ..+..+++|++|++++ +.+
T Consensus 226 ~~-------~~~~~~L~~L~L~~n-~l~~~----~~l~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~-N~l 290 (597)
T 3oja_B 226 VR-------GPVNVELTILKLQHN-NLTDT----AWLLNYPGLVEVDLSYN-ELEKIMY-HPFVKMQRLERLYISN-NRL 290 (597)
T ss_dssp EE-------CSCCSCCCEEECCSS-CCCCC----GGGGGCTTCSEEECCSS-CCCEEES-GGGTTCSSCCEEECTT-SCC
T ss_pred cc-------cccCCCCCEEECCCC-CCCCC----hhhccCCCCCEEECCCC-ccCCCCH-HHhcCccCCCEEECCC-CCC
Confidence 22 122457777777774 33322 23456788888888884 4666544 3477888899999888 455
Q ss_pred chhhcccccCCccCCcccceecCccCEEeecCCCcccccccccccccccccccceecccCCCceeecccccCcccccccc
Q 001200 447 KEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNE 526 (1125)
Q Consensus 447 ~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 526 (1125)
..++. ....+++|+.|+++++. +..++. .+..+++|+.|++++|.....+
T Consensus 291 ~~l~~------------~~~~l~~L~~L~Ls~N~-l~~i~~----~~~~l~~L~~L~L~~N~l~~~~------------- 340 (597)
T 3oja_B 291 VALNL------------YGQPIPTLKVLDLSHNH-LLHVER----NQPQFDRLENLYLDHNSIVTLK------------- 340 (597)
T ss_dssp CEEEC------------SSSCCTTCCEEECCSSC-CCCCGG----GHHHHTTCSEEECCSSCCCCCC-------------
T ss_pred CCCCc------------ccccCCCCcEEECCCCC-CCccCc----ccccCCCCCEEECCCCCCCCcC-------------
Confidence 55541 12457889999988864 445543 3567888999999988632211
Q ss_pred cccccccceeecccccccc
Q 001200 527 KVVFPNLETLELCAISTEK 545 (1125)
Q Consensus 527 ~~~~~~L~~L~l~~~~l~~ 545 (1125)
...+++|+.|++++|++..
T Consensus 341 ~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 341 LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCTTCCCSEEECCSSCEEH
T ss_pred hhhcCCCCEEEeeCCCCCC
Confidence 3457899999999999554
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1e-20 Score=212.81 Aligned_cols=123 Identities=20% Similarity=0.322 Sum_probs=61.4
Q ss_pred CccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEc
Q 001200 109 QLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSL 185 (1125)
Q Consensus 109 ~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~L 185 (1125)
+++.++++++.+. .+|..+ .++|++|++++|.+..+ |.+|..+++|++|++++|.+..+ ..++++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 3445555444443 444332 13455555555555544 23455555555555555555433 34555555555555
Q ss_pred cCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCcc
Q 001200 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 238 (1125)
Q Consensus 186 s~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~ 238 (1125)
++|.+..+|..+. .+|++|++++|. +..+|.+.++++++|++|++++|.+
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred CCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCcc
Confidence 5555555554433 455555555554 5555544455555555555555544
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=2e-20 Score=209.07 Aligned_cols=174 Identities=18% Similarity=0.292 Sum_probs=147.8
Q ss_pred CCCCCEEEeecCCCcccCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEc
Q 001200 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (1125)
Q Consensus 85 ~~~l~~L~l~~n~~~~l~~~~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L 163 (1125)
..+++.|++++|.+..+|..+ .+++|++|++++|.+. .+|.. |.++++|++|++++|.+..+|..++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 468999999999999998877 7899999999999888 78754 58899999999999999999999999999999999
Q ss_pred cCCCC-CCc-ccc---------cCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEE
Q 001200 164 DRCAL-GDI-AII---------GNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLY 232 (1125)
Q Consensus 164 ~~~~l-~~l-~~~---------~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~ 232 (1125)
++|.+ ..+ ..+ +++.+|++|++++|.+..+|..++++++|++|++++|. +..+|.. ++.+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEEE
Confidence 99763 333 333 45999999999999999999999999999999999998 8888887 88999999999
Q ss_pred eecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCC
Q 001200 233 MGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1125)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 273 (1125)
+++|.+. ...+..++.+++|++|++++|..
T Consensus 236 Ls~n~~~-----------~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 236 LRGCTAL-----------RNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp CTTCTTC-----------CBCCCCTTCCCCCCEEECTTCTT
T ss_pred CcCCcch-----------hhhHHHhcCCCCCCEEECCCCCc
Confidence 9998776 33456678888899999888764
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=1.4e-19 Score=203.20 Aligned_cols=148 Identities=21% Similarity=0.348 Sum_probs=93.4
Q ss_pred CCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccC
Q 001200 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDR 165 (1125)
Q Consensus 87 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~ 165 (1125)
+++.++++++.+..+|..+. +.+++|++++|.+. .++...|.++++|++|++++|.+..+ |.+|+.+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 56677777777776666543 56777777777665 45555566777777777777777665 56677777777777777
Q ss_pred CCCCCc-ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCc--cCccccCCCCCccEEEeecCccc
Q 001200 166 CALGDI-AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 166 ~~l~~l-~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~--ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
|.++.+ ..+. .+|++|++++|.+..++. .++++.+|++|++++|. +.. +....+.++++|++|++++|.+.
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccc
Confidence 766655 2222 566677777666666553 46666667777666665 432 22233566666666666666554
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2.9e-19 Score=200.77 Aligned_cols=230 Identities=19% Similarity=0.257 Sum_probs=182.1
Q ss_pred ecCCCccCCCcccCCCCCCEEEeecCCCcccCCC-C-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc
Q 001200 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (1125)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~-~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l 148 (1125)
+.+.....+|. ...+++++|++++|.+..++.. + ++++|++|++++|.+. .+++..|.++++|++|++++|.+..+
T Consensus 38 ~~~~~l~~lp~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l 115 (330)
T 1xku_A 38 CSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKEL 115 (330)
T ss_dssp CTTSCCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBC
T ss_pred ecCCCccccCc-cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCcc
Confidence 34444444443 4567899999999999998874 3 8999999999999987 56556689999999999999999999
Q ss_pred CcccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCC---CCchhhccCCCCCEEeecCCCCCCccCccccC
Q 001200 149 PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIE---QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLS 223 (1125)
Q Consensus 149 p~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~---~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~ 223 (1125)
|..+. ++|++|++++|.+..+ ..++++.+|++|++++|.+. ..|..+.++++|++|++++|. +..+|.. +.
T Consensus 116 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~-~~ 191 (330)
T 1xku_A 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG-LP 191 (330)
T ss_dssp CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSS-CC
T ss_pred Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcc-cc
Confidence 87765 8999999999999877 56999999999999999886 346789999999999999998 9999976 33
Q ss_pred CCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeCCcccccCCCC
Q 001200 224 GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYK 303 (1125)
Q Consensus 224 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 303 (1125)
++|++|++++|.+. ...+..+..+++|+.|++++|.+..++...
T Consensus 192 --~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----------------------- 235 (330)
T 1xku_A 192 --PSLTELHLDGNKIT-----------KVDAASLKGLNNLAKLGLSFNSISAVDNGS----------------------- 235 (330)
T ss_dssp --TTCSEEECTTSCCC-----------EECTGGGTTCTTCCEEECCSSCCCEECTTT-----------------------
T ss_pred --ccCCEEECCCCcCC-----------ccCHHHhcCCCCCCEEECCCCcCceeChhh-----------------------
Confidence 89999999999876 334567889999999999999876554321
Q ss_pred CceEEEEecccCChhHHHhhhccccEEEccccCCcccccccccccccccCcEEEeecCC
Q 001200 304 NKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (1125)
Q Consensus 304 ~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 362 (1125)
+..+++|+.|+++++.. ..+...+ ..+++|++|++++|.
T Consensus 236 -----------------~~~l~~L~~L~L~~N~l-~~lp~~l--~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 236 -----------------LANTPHLRELHLNNNKL-VKVPGGL--ADHKYIQVVYLHNNN 274 (330)
T ss_dssp -----------------GGGSTTCCEEECCSSCC-SSCCTTT--TTCSSCCEEECCSSC
T ss_pred -----------------ccCCCCCCEEECCCCcC-ccCChhh--ccCCCcCEEECCCCc
Confidence 12345677777766533 2333332 567788888888775
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.8e-19 Score=202.55 Aligned_cols=288 Identities=18% Similarity=0.224 Sum_probs=185.1
Q ss_pred CCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccC
Q 001200 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDR 165 (1125)
Q Consensus 87 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~ 165 (1125)
+++.++++++.+..+|..+ .++|++|++++|.+. .++...|.++++|++|++++|.+..+ |.+|+.+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 5788888888888888766 368888888888876 66666678888888888888888876 67788888888888888
Q ss_pred CCCCCc-ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCc--cCccccCCCCCccEEEeecCccccc
Q 001200 166 CALGDI-AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVKWE 241 (1125)
Q Consensus 166 ~~l~~l-~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~--ip~~~l~~L~~L~~L~l~~~~~~~~ 241 (1125)
|.+..+ ..+. .+|++|++++|.+..+|. .++++++|++|++++|. +.. ++...+..+ +|++|++++|.+..
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 888766 3333 788888888888888875 47888888888888887 642 333436677 88888888887651
Q ss_pred cccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHHH
Q 001200 242 FEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVI 321 (1125)
Q Consensus 242 ~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~ 321 (1125)
.+..+ .++|++|++++|.+..++... +
T Consensus 187 -----------l~~~~--~~~L~~L~l~~n~i~~~~~~~----------------------------------------l 213 (332)
T 2ft3_A 187 -----------IPKDL--PETLNELHLDHNKIQAIELED----------------------------------------L 213 (332)
T ss_dssp -----------CCSSS--CSSCSCCBCCSSCCCCCCTTS----------------------------------------S
T ss_pred -----------cCccc--cCCCCEEECCCCcCCccCHHH----------------------------------------h
Confidence 11112 157888888888776554321 0
Q ss_pred hhhccccEEEccccCCcccccccccccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccccccceeccCcc
Q 001200 322 MQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQL 401 (1125)
Q Consensus 322 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 401 (1125)
..+++|+.|+++++... ...+ ..+..+++|++|++++|. +..++. .+..+++|+.|++.+ +.++.+....+
T Consensus 214 ~~l~~L~~L~L~~N~l~-~~~~-~~~~~l~~L~~L~L~~N~-l~~lp~-----~l~~l~~L~~L~l~~-N~l~~~~~~~~ 284 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIR-MIEN-GSLSFLPTLRELHLDNNK-LSRVPA-----GLPDLKLLQVVYLHT-NNITKVGVNDF 284 (332)
T ss_dssp TTCTTCSCCBCCSSCCC-CCCT-TGGGGCTTCCEEECCSSC-CCBCCT-----TGGGCTTCCEEECCS-SCCCBCCTTSS
T ss_pred cCCCCCCEEECCCCcCC-cCCh-hHhhCCCCCCEEECCCCc-CeecCh-----hhhcCccCCEEECCC-CCCCccChhHc
Confidence 12334555555543221 1111 112455666666666664 222221 234556666666665 33444322222
Q ss_pred C----cccccCccEEEeccCCCcC-cccchhhhccCCcccEEeccccc
Q 001200 402 R----AESFYKLKIIKVRNCDKLK-NIFSFSFVRGLPQLQTLNVINCK 444 (1125)
Q Consensus 402 ~----~~~~~~L~~L~l~~C~~L~-~l~~~~~~~~l~~L~~L~l~~c~ 444 (1125)
. ...+++|+.|++.+++-.. .+++ ..+..+++|+.++++++.
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~-~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQP-ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCG-GGGTTBCCSTTEEC----
T ss_pred cccccccccccccceEeecCcccccccCc-ccccccchhhhhhccccc
Confidence 1 1125778889988866321 2333 457788999999988754
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.3e-19 Score=202.51 Aligned_cols=130 Identities=23% Similarity=0.390 Sum_probs=77.9
Q ss_pred CCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCc-ccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecC
Q 001200 132 MSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSG 210 (1125)
Q Consensus 132 l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l-~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 210 (1125)
..++++|++++|.+..+|..+..+++|++|+|++|.+..+ ..++++.+|++|++++|.+..+|..++++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 3556666666666666666666666666666666666554 456666666666666666666666666666666666666
Q ss_pred CCCCCccCccccC---------CCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCc
Q 001200 211 CSKLKVIPPNLLS---------GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (1125)
Q Consensus 211 ~~~l~~ip~~~l~---------~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 274 (1125)
|..+..+|.. ++ ++++|++|++++|.+. ..+..++.+++|++|++++|.+.
T Consensus 160 n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~------------~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 160 CPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR------------SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp ETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC------------CCCGGGGGCTTCCEEEEESSCCC
T ss_pred CCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC------------cchHhhcCCCCCCEEEccCCCCC
Confidence 6555666654 32 2566666666665543 12334555556666666655543
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=204.25 Aligned_cols=194 Identities=19% Similarity=0.241 Sum_probs=139.9
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccCCC
Q 001200 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (1125)
Q Consensus 89 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~~ 167 (1125)
...+.+++.++++|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+..+ |.+|+.+++|++|++++|.
T Consensus 34 ~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLT-EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp SEEECCSTTCSSCCTTCC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eEeeCCCCCccccccccc-ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 346677777777777653 47888888887776 56666677788888888888877766 4567788888888888888
Q ss_pred CCCc--ccccCCCCCcEEEccCCCCCCCch--hhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccc
Q 001200 168 LGDI--AIIGNLKKLEILSLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (1125)
Q Consensus 168 l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~ 243 (1125)
++.+ ..++++++|++|++++|.+..+|. .++++++|++|++++|..+..++...++++++|++|++++|.+.
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~---- 187 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ---- 187 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC----
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC----
Confidence 7766 337778888888888888777776 57778888888888775467776555777888888888877765
Q ss_pred cccccCCCCChhhhCCCCCCCEEEeecCCCcccCCcc--ccccccEEEEEeCCc
Q 001200 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIGDE 295 (1125)
Q Consensus 244 ~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~ 295 (1125)
...+..++.+++|++|++++|.+..++..+ ...+|+.+++..+..
T Consensus 188 -------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 188 -------SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp -------EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred -------ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence 233456777777888888887776665544 356777777765543
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=4.2e-20 Score=205.24 Aligned_cols=242 Identities=16% Similarity=0.166 Sum_probs=167.8
Q ss_pred CCCCEEEeecCCCc---ccCCCC-CCCCccEEEecC-CCCCCCCChhhhcCCCCCcEEEeecCCcc-ccCcccCCCCCCc
Q 001200 86 KNCPTIFLHDCKHW---EVPEGL-EYPQLEFFCMSP-RDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPSLFHLPLNLQ 159 (1125)
Q Consensus 86 ~~l~~L~l~~n~~~---~l~~~~-~~~~L~~L~l~~-n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~-~lp~~l~~l~~Lr 159 (1125)
.++++|++++|.+. .+|..+ .+++|++|++++ |.+...+|.. |.++++|++|++++|.+. .+|..|..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 57888888888886 466665 788888888884 7766566644 578888888888888887 6788888888888
Q ss_pred EEEccCCCCC-Cc-ccccCCCCCcEEEccCCCCC-CCchhhccCC-CCCEEeecCCCCCC-ccCccccCCCCCccEEEee
Q 001200 160 TLCLDRCALG-DI-AIIGNLKKLEILSLVDSNIE-QLPEEMAQLT-QLRLFDLSGCSKLK-VIPPNLLSGLSRLEDLYMG 234 (1125)
Q Consensus 160 ~L~L~~~~l~-~l-~~~~~L~~L~~L~Ls~~~i~-~lp~~i~~L~-~L~~L~L~~~~~l~-~ip~~~l~~L~~L~~L~l~ 234 (1125)
+|++++|.+. .+ ..++.+++|++|++++|.+. .+|..++++. +|++|++++|. +. .+|.. ++.+. |++|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~-~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPT-FANLN-LAFVDLS 205 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGG-GGGCC-CSEEECC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChH-HhCCc-ccEEECc
Confidence 8888888876 33 67888888888888888887 7788888887 88888888887 55 55555 67776 8888888
Q ss_pred cCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceEEEEeccc
Q 001200 235 NTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYT 314 (1125)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~ 314 (1125)
+|.+. ...+..++.+++|+.|++++|.+...++.+
T Consensus 206 ~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---------------------------------- 240 (313)
T 1ogq_A 206 RNMLE-----------GDASVLFGSDKNTQKIHLAKNSLAFDLGKV---------------------------------- 240 (313)
T ss_dssp SSEEE-----------ECCGGGCCTTSCCSEEECCSSEECCBGGGC----------------------------------
T ss_pred CCccc-----------CcCCHHHhcCCCCCEEECCCCceeeecCcc----------------------------------
Confidence 88765 334566778888888888877653222211
Q ss_pred CChhHHHhhhccccEEEccccCCcccccccccccccccCcEEEeecCCCeeEeeeCCcccccccccccceeeccccc
Q 001200 315 SNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLI 391 (1125)
Q Consensus 315 ~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~ 391 (1125)
..+++|++|+++++......+.. +..+++|++|++++|.....++. ...+++|+.|++.+.+
T Consensus 241 -------~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~ip~------~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 241 -------GLSKNLNGLDLRNNRIYGTLPQG--LTQLKFLHSLNVSFNNLCGEIPQ------GGNLQRFDVSAYANNK 302 (313)
T ss_dssp -------CCCTTCCEEECCSSCCEECCCGG--GGGCTTCCEEECCSSEEEEECCC------STTGGGSCGGGTCSSS
T ss_pred -------cccCCCCEEECcCCcccCcCChH--HhcCcCCCEEECcCCcccccCCC------CccccccChHHhcCCC
Confidence 12446666777665443232222 25677777777777753333321 2445666666665543
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=3.1e-19 Score=195.85 Aligned_cols=192 Identities=27% Similarity=0.411 Sum_probs=132.6
Q ss_pred cCCCccCCCcccCCCCCCEEEeecCCCcccCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCC-cccc
Q 001200 72 RNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ-FLSL 148 (1125)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~--~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~-i~~l 148 (1125)
.+.+...+|. ...+++++|++++|.+..++... .+++|++|++++|.+. .++...|.++++|++|++++|. +..+
T Consensus 19 ~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~ 96 (285)
T 1ozn_A 19 PQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSV 96 (285)
T ss_dssp CSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred CcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCcccc
Confidence 3344444442 34567777777777777776532 6777777777777665 4545556777777777777775 6666
Q ss_pred -CcccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCccCccccCC
Q 001200 149 -PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSG 224 (1125)
Q Consensus 149 -p~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~ 224 (1125)
|..+..+++|++|++++|.+..+ ..+.++++|++|++++|.+..+|. .++++++|++|++++|. +..+|...+..
T Consensus 97 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 175 (285)
T 1ozn_A 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRG 175 (285)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTT
T ss_pred CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcC
Confidence 56677777777777777777655 557777777777777777777764 36777777777777776 77777665777
Q ss_pred CCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccC
Q 001200 225 LSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILP 277 (1125)
Q Consensus 225 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 277 (1125)
+++|++|++++|.+. ...+..++.+++|+.|++++|.+..++
T Consensus 176 l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 176 LHSLDRLLLHQNRVA-----------HVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp CTTCCEEECCSSCCC-----------EECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ccccCEEECCCCccc-----------ccCHhHccCcccccEeeCCCCcCCcCC
Confidence 777777777777665 233456667777777777777665444
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=8.1e-21 Score=232.38 Aligned_cols=169 Identities=12% Similarity=0.089 Sum_probs=76.0
Q ss_pred cccCccEEEecc----------CCCcCcccchhhhccCCcccEEecccccccchhhcccccCCccCCcccc-eecCccCE
Q 001200 405 SFYKLKIIKVRN----------CDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDK-IEFSQLHS 473 (1125)
Q Consensus 405 ~~~~L~~L~l~~----------C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~-~~~~~L~~ 473 (1125)
.+++|++|++.+ |+.++..........+++|++|++ .|+.+...... .. ..+++|+.
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~-----------~l~~~~~~L~~ 407 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLE-----------SIGTYLKNLCD 407 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHH-----------HHHHHCCSCCE
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHH-----------HHHhhCCCCcE
Confidence 345566666664 555554322223445666666666 33444322100 01 12556666
Q ss_pred EeecC---CCcccccccc--cccccccccccceecccCCCceeecccccCcccccccccccccccceeeccccccccccc
Q 001200 474 LTLKF---LPQLTSFYSQ--VKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWC 548 (1125)
Q Consensus 474 L~l~~---~~~l~~~~~~--~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 548 (1125)
|++.+ ++.+++.+.. ....+..+++|+.|+++.|...... .........+++|+.|++++|.++....
T Consensus 408 L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~-------~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD-------LGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp EEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH-------HHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred EEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH-------HHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 66653 3344433210 0111334555666666554321000 0000001124556666666665443211
Q ss_pred cCcccccCCCCcEEEEecCCCccccCCchhhhhccCCcEEEEeccc
Q 001200 549 NQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCS 594 (1125)
Q Consensus 549 ~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 594 (1125)
..+. ..+++|+.|+|++|+ ++......++..+++|+.|++++|.
T Consensus 481 ~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 481 MEFS-RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHH-TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHH-hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 1110 124666666666665 4432223344556666666666666
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=3.5e-19 Score=208.52 Aligned_cols=175 Identities=23% Similarity=0.305 Sum_probs=123.9
Q ss_pred CCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC-cccCCCCCCcEEEccCC
Q 001200 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRC 166 (1125)
Q Consensus 88 l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~L~~~ 166 (1125)
.+.++..++.+.++|..+. ++++.|++++|.+. .++...|.++++|++|+|++|.+..++ .+|..+++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4566666777777776653 56777777777766 555566777777777777777777664 56777777777777777
Q ss_pred CCCCc--ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccc
Q 001200 167 ALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (1125)
Q Consensus 167 ~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~ 243 (1125)
.++.+ ..|..+.+|++|++++|.+..+|. .+.++.+|++|++++|..+..++.+.+.++++|++|++++|.+.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---- 198 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---- 198 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc----
Confidence 77766 457777777777777777777664 56777777777777766677777766777777777777777665
Q ss_pred cccccCCCCChhhhCCCCCCCEEEeecCCCcccC
Q 001200 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILP 277 (1125)
Q Consensus 244 ~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 277 (1125)
.+..+..+++|+.|++++|.+..++
T Consensus 199 ---------~~~~~~~l~~L~~L~Ls~N~l~~~~ 223 (440)
T 3zyj_A 199 ---------EIPNLTPLIKLDELDLSGNHLSAIR 223 (440)
T ss_dssp ---------SCCCCTTCSSCCEEECTTSCCCEEC
T ss_pred ---------cccccCCCcccCEEECCCCccCccC
Confidence 2234667777777777777765543
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=4.6e-19 Score=208.26 Aligned_cols=176 Identities=23% Similarity=0.276 Sum_probs=135.9
Q ss_pred CCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC-cccCCCCCCcEEEccCC
Q 001200 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRC 166 (1125)
Q Consensus 88 l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~L~~~ 166 (1125)
.+.++..++.+..+|..+. +++++|++++|.+. .++...|.++++|++|+|++|.+..++ ..|.++++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC-CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4567777777888877663 67888888888776 566666788888888888888888764 67888888888888888
Q ss_pred CCCCc--ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccc
Q 001200 167 ALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (1125)
Q Consensus 167 ~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~ 243 (1125)
.++.+ ..+..+++|++|++++|.+..+|. .+.++++|++|++++|..+..++.+.+.++++|++|++++|.+.
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---- 209 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---- 209 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS----
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc----
Confidence 88766 457888888888888888887765 67888888888888876688888777888888888888888765
Q ss_pred cccccCCCCChhhhCCCCCCCEEEeecCCCcccCC
Q 001200 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (1125)
Q Consensus 244 ~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~ 278 (1125)
.+..+..+++|+.|++++|.+..+++
T Consensus 210 ---------~~~~~~~l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 210 ---------DMPNLTPLVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp ---------SCCCCTTCTTCCEEECTTSCCSEECG
T ss_pred ---------ccccccccccccEEECcCCcCcccCc
Confidence 22357777888888888887655533
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=2.4e-19 Score=199.13 Aligned_cols=151 Identities=19% Similarity=0.253 Sum_probs=68.2
Q ss_pred CCCCEEEeecCCCcccCCCC--CCCCccEEEecCCCCCCCCC--hhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEE
Q 001200 86 KNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIP--NHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTL 161 (1125)
Q Consensus 86 ~~l~~L~l~~n~~~~l~~~~--~~~~L~~L~l~~n~~~~~l~--~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L 161 (1125)
+++++|++++|.+..++... ++++|++|++++|.+. .+. ...+.++++|++|++++|.+..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-EEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccC-cccCcccccccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 44555555555554444432 4445555555544433 110 112234445555555555544444444445555555
Q ss_pred EccCCCCCCc---ccccCCCCCcEEEccCCCCCCC-chhhccCCCCCEEeecCCCCCCc--cCccccCCCCCccEEEeec
Q 001200 162 CLDRCALGDI---AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGN 235 (1125)
Q Consensus 162 ~L~~~~l~~l---~~~~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~--ip~~~l~~L~~L~~L~l~~ 235 (1125)
++++|.+..+ ..+..+++|++|++++|.+... |..++.+++|++|++++|. +.. +|.. +..+++|++|++++
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI-FTELRNLTFLDLSQ 184 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECSC-CTTCTTCCEEECTT
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccchhH-HhhCcCCCEEECCC
Confidence 5555444332 2344445555555555544422 2334444555555555444 332 3332 44445555555554
Q ss_pred Cccc
Q 001200 236 TSVK 239 (1125)
Q Consensus 236 ~~~~ 239 (1125)
|.+.
T Consensus 185 n~l~ 188 (306)
T 2z66_A 185 CQLE 188 (306)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 4443
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=1.3e-18 Score=190.78 Aligned_cols=175 Identities=20% Similarity=0.244 Sum_probs=154.3
Q ss_pred CCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccCC
Q 001200 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRC 166 (1125)
Q Consensus 88 l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~ 166 (1125)
-+.++.+++.+..+|..+ .++|++|++++|.+. .++...|.++++|++|++++|.+..+ |.+|..+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 378889999999998765 479999999999987 67877889999999999999999987 788999999999999999
Q ss_pred C-CCCc--ccccCCCCCcEEEccCCCCCCC-chhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCcccccc
Q 001200 167 A-LGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (1125)
Q Consensus 167 ~-l~~l--~~~~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~ 242 (1125)
. +..+ ..+..+++|++|++++|.+..+ |..+.++++|++|++++|. +..++...++.+++|++|++++|.+.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~--- 166 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS--- 166 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC---
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccc---
Confidence 7 8866 7799999999999999999987 5678999999999999998 88898877899999999999999876
Q ss_pred ccccccCCCCChhhhCCCCCCCEEEeecCCCccc
Q 001200 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMIL 276 (1125)
Q Consensus 243 ~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~ 276 (1125)
......+..+++|+.|++++|.+..+
T Consensus 167 --------~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 167 --------SVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp --------EECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred --------ccCHHHhcCccccCEEECCCCccccc
Confidence 22334588899999999999987655
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=2.4e-18 Score=195.13 Aligned_cols=155 Identities=24% Similarity=0.313 Sum_probs=134.2
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCc-ccCCCCCCcEEEccCCCCCCc--ccccCCCCCcE
Q 001200 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEI 182 (1125)
Q Consensus 106 ~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~ 182 (1125)
.|+...+.+++++.+. .+|..++ ++|++|++++|.+..+|. .+..+++|++|++++|.+..+ ..++++++|++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 5666677888888887 7887653 589999999999999875 899999999999999999876 56999999999
Q ss_pred EEccCCCCCCCchh-hccCCCCCEEeecCCCCCCccCc-cccCCCCCccEEEeecCc-cccccccccccCCCCChhhhCC
Q 001200 183 LSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTS-VKWEFEGLNVGRSNASLQELKL 259 (1125)
Q Consensus 183 L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~ip~-~~l~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~L~~ 259 (1125)
|++++|.++.+|.. ++++++|++|++++|. +..+|. +.+.++++|++|++++|. +. ......+++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~-----------~~~~~~~~~ 172 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT-----------KIQRKDFAG 172 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC-----------EECTTTTTT
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccc-----------ccCHHHccC
Confidence 99999999999876 8999999999999998 889987 558999999999999984 43 223457888
Q ss_pred CCCCCEEEeecCCCccc
Q 001200 260 LSHLTTLEIQICDAMIL 276 (1125)
Q Consensus 260 L~~L~~L~l~~~~~~~~ 276 (1125)
+++|++|++++|.+...
T Consensus 173 l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 173 LTFLEELEIDASDLQSY 189 (353)
T ss_dssp CCEEEEEEEEETTCCEE
T ss_pred CCCCCEEECCCCCcCcc
Confidence 99999999999987655
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=3.5e-19 Score=197.84 Aligned_cols=152 Identities=15% Similarity=0.244 Sum_probs=131.7
Q ss_pred CCccEEEecCCCCCC--CCChhhhcCCCCCcEEEeec-CCcc-ccCcccCCCCCCcEEEccCCCCC-Cc-ccccCCCCCc
Q 001200 108 PQLEFFCMSPRDHSI--KIPNHVFAGMSNLRGLALSN-MQFL-SLPSLFHLPLNLQTLCLDRCALG-DI-AIIGNLKKLE 181 (1125)
Q Consensus 108 ~~L~~L~l~~n~~~~--~l~~~~f~~l~~Lr~L~Ls~-~~i~-~lp~~l~~l~~Lr~L~L~~~~l~-~l-~~~~~L~~L~ 181 (1125)
.+++.|++++|.+.. .+|. .|.++++|++|++++ |.+. .+|..|+.+++|++|++++|.+. .+ ..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 689999999999886 6775 468999999999995 8877 67999999999999999999987 34 7899999999
Q ss_pred EEEccCCCCC-CCchhhccCCCCCEEeecCCCCCC-ccCccccCCCC-CccEEEeecCccccccccccccCCCCChhhhC
Q 001200 182 ILSLVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLK-VIPPNLLSGLS-RLEDLYMGNTSVKWEFEGLNVGRSNASLQELK 258 (1125)
Q Consensus 182 ~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~-~ip~~~l~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 258 (1125)
+|++++|.+. .+|..++++++|++|++++|. +. .+|.. ++.+. +|++|++++|.+. +..+..++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~-l~~l~~~L~~L~L~~N~l~-----------~~~~~~~~ 195 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDS-YGSFSKLFTSMTISRNRLT-----------GKIPPTFA 195 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGG-GGCCCTTCCEEECCSSEEE-----------EECCGGGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHH-HhhhhhcCcEEECcCCeee-----------ccCChHHh
Confidence 9999999988 789999999999999999998 66 78877 78888 9999999999876 33456677
Q ss_pred CCCCCCEEEeecCCCc
Q 001200 259 LLSHLTTLEIQICDAM 274 (1125)
Q Consensus 259 ~L~~L~~L~l~~~~~~ 274 (1125)
.++ |+.|++++|.+.
T Consensus 196 ~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLE 210 (313)
T ss_dssp GCC-CSEEECCSSEEE
T ss_pred CCc-ccEEECcCCccc
Confidence 776 999999988754
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=3.2e-18 Score=200.34 Aligned_cols=233 Identities=21% Similarity=0.298 Sum_probs=191.7
Q ss_pred cCCCccCCCcccCCCCCCEEEeecCCCcccCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC
Q 001200 72 RNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP 149 (1125)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~--~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp 149 (1125)
.+.....+| .....++++|++++|.+..++... ++++|++|++++|.+. .++...|.++++|++|+|++|.+..+|
T Consensus 51 ~~~~l~~iP-~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~ 128 (440)
T 3zyj_A 51 VRKNLREVP-DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIP 128 (440)
T ss_dssp CSCCCSSCC-SCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCC
T ss_pred CCCCcCcCC-CCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeC
Confidence 344555555 356789999999999999887543 8999999999999987 788788999999999999999999986
Q ss_pred c-ccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCC-CCCCCch-hhccCCCCCEEeecCCCCCCccCccccCC
Q 001200 150 S-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDS-NIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSG 224 (1125)
Q Consensus 150 ~-~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~-~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~ 224 (1125)
. .|..+++|++|+|++|.+..+ ..+.++++|++|++++| .+..+|. .|.++.+|++|++++|. +..+|. +..
T Consensus 129 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~ 205 (440)
T 3zyj_A 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTP 205 (440)
T ss_dssp TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CTT
T ss_pred HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cCC
Confidence 5 699999999999999999977 57999999999999995 6777775 68999999999999998 999996 899
Q ss_pred CCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeCCcccccCCCCC
Q 001200 225 LSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKN 304 (1125)
Q Consensus 225 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 304 (1125)
+++|++|++++|.+. ...+..+..+++|+.|++++|.+..++...
T Consensus 206 l~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------------------ 250 (440)
T 3zyj_A 206 LIKLDELDLSGNHLS-----------AIRPGSFQGLMHLQKLWMIQSQIQVIERNA------------------------ 250 (440)
T ss_dssp CSSCCEEECTTSCCC-----------EECTTTTTTCTTCCEEECTTCCCCEECTTS------------------------
T ss_pred CcccCEEECCCCccC-----------ccChhhhccCccCCEEECCCCceeEEChhh------------------------
Confidence 999999999999887 334567889999999999999876654432
Q ss_pred ceEEEEecccCChhHHHhhhccccEEEccccCCcccccccccccccccCcEEEeecCC
Q 001200 305 KRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (1125)
Q Consensus 305 l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 362 (1125)
+..+++|+.|+|+++... .. +.-.+..+++|+.|++++|+
T Consensus 251 ----------------~~~l~~L~~L~L~~N~l~-~~-~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 ----------------FDNLQSLVEINLAHNNLT-LL-PHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ----------------STTCTTCCEEECTTSCCC-CC-CTTTTSSCTTCCEEECCSSC
T ss_pred ----------------hcCCCCCCEEECCCCCCC-cc-ChhHhccccCCCEEEcCCCC
Confidence 123557777888775432 22 22224678899999999987
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=4.4e-18 Score=199.86 Aligned_cols=232 Identities=22% Similarity=0.259 Sum_probs=189.6
Q ss_pred CCCccCCCcccCCCCCCEEEeecCCCcccCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCc
Q 001200 73 NDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS 150 (1125)
Q Consensus 73 ~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~--~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~ 150 (1125)
+.....+| .....++++|++++|.+..++... ++++|++|++++|.+. .++...|.++++|++|+|++|.+..+|.
T Consensus 63 ~~~l~~iP-~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 140 (452)
T 3zyi_A 63 RRGLSEVP-QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPS 140 (452)
T ss_dssp SSCCSSCC-SCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCT
T ss_pred CCCcCccC-CCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccCh
Confidence 34444554 356689999999999999886543 8999999999999887 6777788999999999999999999865
Q ss_pred -ccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCC-CCCCCch-hhccCCCCCEEeecCCCCCCccCccccCCC
Q 001200 151 -LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDS-NIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGL 225 (1125)
Q Consensus 151 -~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~-~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L 225 (1125)
.|..+++|++|+|++|.+..+ ..+.++++|++|++++| .+..+|. .+..+.+|++|++++|. +..+|. +..+
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l 217 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LTPL 217 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CTTC
T ss_pred hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--cccc
Confidence 589999999999999999977 57999999999999995 6777875 58999999999999998 999986 8999
Q ss_pred CCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCc
Q 001200 226 SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNK 305 (1125)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l 305 (1125)
.+|++|++++|.+. ...+..+.++++|+.|++++|.+..++...
T Consensus 218 ~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------------------- 261 (452)
T 3zyi_A 218 VGLEELEMSGNHFP-----------EIRPGSFHGLSSLKKLWVMNSQVSLIERNA------------------------- 261 (452)
T ss_dssp TTCCEEECTTSCCS-----------EECGGGGTTCTTCCEEECTTSCCCEECTTT-------------------------
T ss_pred ccccEEECcCCcCc-----------ccCcccccCccCCCEEEeCCCcCceECHHH-------------------------
Confidence 99999999999887 345678999999999999999876554432
Q ss_pred eEEEEecccCChhHHHhhhccccEEEccccCCcccccccccccccccCcEEEeecCC
Q 001200 306 RVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (1125)
Q Consensus 306 ~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 362 (1125)
+..+++|+.|+|+++.... ++.-.+..+++|++|++++|+
T Consensus 262 ---------------~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 ---------------FDGLASLVELNLAHNNLSS--LPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ---------------TTTCTTCCEEECCSSCCSC--CCTTSSTTCTTCCEEECCSSC
T ss_pred ---------------hcCCCCCCEEECCCCcCCc--cChHHhccccCCCEEEccCCC
Confidence 1224566777777666542 222223678889999999887
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=2.6e-17 Score=197.84 Aligned_cols=255 Identities=20% Similarity=0.167 Sum_probs=180.6
Q ss_pred CCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCC
Q 001200 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (1125)
Q Consensus 87 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~ 166 (1125)
+++.|++++|.+..+|..+. ++|++|++++|.+. .+|. .+++|++|+|++|.++.+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 58899999999999988775 89999999999887 6775 57899999999999999986 6799999999999
Q ss_pred CCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCcccccccccc
Q 001200 167 ALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLN 246 (1125)
Q Consensus 167 ~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 246 (1125)
.++.+.. .+.+|++|++++|.+..+|.. +++|++|++++|. +..+|. .+.+|+.|++++|.+.
T Consensus 112 ~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~------- 174 (622)
T 3g06_A 112 PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLT------- 174 (622)
T ss_dssp CCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCS-------
T ss_pred cCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCC-------
Confidence 9888755 678999999999999999864 4889999999997 888875 3468899999998876
Q ss_pred ccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHHHhhhcc
Q 001200 247 VGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKG 326 (1125)
Q Consensus 247 ~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~ 326 (1125)
. +. ..+++|+.|++++|.+..++... ++
T Consensus 175 ----~--l~--~~~~~L~~L~Ls~N~l~~l~~~~--------------------------------------------~~ 202 (622)
T 3g06_A 175 ----S--LP--MLPSGLQELSVSDNQLASLPTLP--------------------------------------------SE 202 (622)
T ss_dssp ----C--CC--CCCTTCCEEECCSSCCSCCCCCC--------------------------------------------TT
T ss_pred ----C--Cc--ccCCCCcEEECCCCCCCCCCCcc--------------------------------------------ch
Confidence 1 11 45678999999998876655421 24
Q ss_pred ccEEEccccCCcccccccccccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecccccccceeccCccCcccc
Q 001200 327 IEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESF 406 (1125)
Q Consensus 327 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 406 (1125)
|+.|++.++.. .. ++ ..+++|++|++++|. ++.++ ..+++|+.|+++++ .++.+ +. .+
T Consensus 203 L~~L~L~~N~l-~~-l~----~~~~~L~~L~Ls~N~-L~~lp--------~~l~~L~~L~Ls~N-~L~~l-----p~-~~ 260 (622)
T 3g06_A 203 LYKLWAYNNRL-TS-LP----ALPSGLKELIVSGNR-LTSLP--------VLPSELKELMVSGN-RLTSL-----PM-LP 260 (622)
T ss_dssp CCEEECCSSCC-SS-CC----CCCTTCCEEECCSSC-CSCCC--------CCCTTCCEEECCSS-CCSCC-----CC-CC
T ss_pred hhEEECcCCcc-cc-cC----CCCCCCCEEEccCCc-cCcCC--------CCCCcCcEEECCCC-CCCcC-----Cc-cc
Confidence 45555544322 11 11 123567777777664 22221 23456666666653 33332 11 45
Q ss_pred cCccEEEeccCCCcCcccchhhhccCCcccEEeccccc
Q 001200 407 YKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCK 444 (1125)
Q Consensus 407 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 444 (1125)
++|+.|++++| +++.+|. .+..+++|+.|++++++
T Consensus 261 ~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 261 SGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp TTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCC
T ss_pred ccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCC
Confidence 66777777664 4555543 25666777777776643
No 60
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=2.7e-19 Score=218.85 Aligned_cols=334 Identities=13% Similarity=0.040 Sum_probs=181.7
Q ss_pred ccccceeeccccccccccccCccc--ccCCCCcEEEEecCCCccccCCchhhhhccCCcEEEEeccccccceeccccccc
Q 001200 530 FPNLETLELCAISTEKIWCNQLAA--VYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEE 607 (1125)
Q Consensus 530 ~~~L~~L~l~~~~l~~~~~~~~~~--~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 607 (1125)
+++|++|+++++.+..+....++. ..+++|++|++++| .+..+ + ..+..+++|++|+++.+........ .
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l-~-~~~~~~~~L~~L~l~~~~~~~~~~~-----~ 262 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILEL-V-GFFKAAANLEEFCGGSLNEDIGMPE-----K 262 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGG-H-HHHHHCTTCCEEEECBCCCCTTCTT-----S
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHH-H-HHHhhhhHHHhhcccccccccchHH-----H
Confidence 556666666666543221111110 12567777777774 34443 2 4566677777777775432211000 0
Q ss_pred ccceeecCccceeccccCCccceecCCCccCCCCcccEEEEeccCceeeeecccccccccccCcccCCcccceeeeeeec
Q 001200 608 ATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVT 687 (1125)
Q Consensus 608 ~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 687 (1125)
......+++|+.|.++++. ...++.. ...+++|++|++++|. ++..... ..-..+
T Consensus 263 ~~~l~~~~~L~~L~l~~~~-~~~l~~~--~~~~~~L~~L~Ls~~~-l~~~~~~---------------------~~~~~~ 317 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMG-PNEMPIL--FPFAAQIRKLDLLYAL-LETEDHC---------------------TLIQKC 317 (592)
T ss_dssp SSCCCCCTTCCEEEETTCC-TTTGGGG--GGGGGGCCEEEETTCC-CCHHHHH---------------------HHHTTC
T ss_pred HHHhhccccccccCccccc-hhHHHHH--HhhcCCCcEEecCCCc-CCHHHHH---------------------HHHHhC
Confidence 0111245677777766642 1222211 1246778888888776 4321100 000346
Q ss_pred CCceEeeeccccccccccccCCccccccccEEEeee----------cCCC--cccHHHHhhcCCccEEEEEcceeEEEcc
Q 001200 688 SKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVN----------DESE--NFRIGFLERFHNLEKLELRWSSYKEIFS 755 (1125)
Q Consensus 688 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------c~~l--~~~~~~l~~l~~L~~L~i~c~~l~~~~~ 755 (1125)
++|+.|+++++-...... .....+++|++|++++ |..+ .........+++|++|+++|+++.....
T Consensus 318 ~~L~~L~L~~~~~~~~l~--~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~ 395 (592)
T 3ogk_B 318 PNLEVLETRNVIGDRGLE--VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL 395 (592)
T ss_dssp TTCCEEEEEGGGHHHHHH--HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHH
T ss_pred cCCCEEeccCccCHHHHH--HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHH
Confidence 778888887332211110 0113467788888885 6655 2223345678889998888777653211
Q ss_pred Chhhhhhh-hhcccccEEeccC---cccccccccC--CCCcccccCcccEEEEecccC-ccc--cccCccccCCccEEeE
Q 001200 756 NEEIVEHA-EMLTQVKSLKLWE---LSDLMYIWKQ--DSKLDSITENLESLEVWWCEN-LIN--LVPSSASFKNLTTLEL 826 (1125)
Q Consensus 756 ~~~~~~~~-~~l~~L~~L~l~~---~~~L~~i~~~--~~~~~~~l~~L~~L~i~~c~~-L~~--l~~~~~~~~~L~~L~i 826 (1125)
. .+ ..+++|++|++++ |+.++..+.. -......+++|++|++++|.. +.. +......+++|++|++
T Consensus 396 ~-----~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L 470 (592)
T 3ogk_B 396 E-----SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL 470 (592)
T ss_dssp H-----HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEE
T ss_pred H-----HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeec
Confidence 1 22 2378888888874 4555543110 001134578899999988775 221 1111234788999999
Q ss_pred ecCCCccccchhHhhhcCCCccEEEEccccchhhhhccCcccccccccccccceeccccCcccccccCCCccccCCCccE
Q 001200 827 WYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLED 906 (1125)
Q Consensus 827 ~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~ 906 (1125)
++|. +........+..+++|++|+|++|+ +....... ....+++|+.|++++|. ++.-........+|.|..
T Consensus 471 ~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~-----~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~ 542 (592)
T 3ogk_B 471 GYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAA-----AVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNI 542 (592)
T ss_dssp CSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHH-----HHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEE
T ss_pred cCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHH-----HHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEE
Confidence 9875 5544334566788999999999997 33211000 01137889999999987 544433333345566655
Q ss_pred EEEcc
Q 001200 907 LFVIE 911 (1125)
Q Consensus 907 L~i~~ 911 (1125)
..|..
T Consensus 543 ~~~~~ 547 (592)
T 3ogk_B 543 ELIPS 547 (592)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 55543
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=4.2e-20 Score=226.17 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=62.3
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecC-Cccc--cCcccCCCCCCcEEEccCCCCCC-----c-ccccC
Q 001200 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNM-QFLS--LPSLFHLPLNLQTLCLDRCALGD-----I-AIIGN 176 (1125)
Q Consensus 106 ~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~-~i~~--lp~~l~~l~~Lr~L~L~~~~l~~-----l-~~~~~ 176 (1125)
.+++|++|++++|.+....+..+...+++|++|++++| .+.. ++..+..+++|++|++++|.++. + .....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 35566666666655442222222224556666666655 3332 33333455666666666665432 1 11224
Q ss_pred CCCCcEEEccCCC--CC--CCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeec
Q 001200 177 LKKLEILSLVDSN--IE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGN 235 (1125)
Q Consensus 177 L~~L~~L~Ls~~~--i~--~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~ 235 (1125)
+++|++|++++|. +. .++.-+.++++|++|++++|..+..+|.. +.++++|++|+++.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGG 244 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSB
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEccccc
Confidence 4566666666554 11 11112234456666666655434444433 45555555555443
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=2.2e-20 Score=220.91 Aligned_cols=158 Identities=19% Similarity=0.193 Sum_probs=102.1
Q ss_pred CCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcc-----ccCcccCCCCCCcEEEccCCCCCCc--cc-ccCCC-
Q 001200 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-----SLPSLFHLPLNLQTLCLDRCALGDI--AI-IGNLK- 178 (1125)
Q Consensus 108 ~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~-----~lp~~l~~l~~Lr~L~L~~~~l~~l--~~-~~~L~- 178 (1125)
++|++|++++|.+.......+|..+++|++|++++|.+. .++..+..+++|++|++++|.+... .. ...+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 456777777776653223344677888888888888776 4566777788888888888877642 22 22344
Q ss_pred ---CCcEEEccCCCCC-----CCchhhccCCCCCEEeecCCCCCCccC-----ccccCCCCCccEEEeecCccccccccc
Q 001200 179 ---KLEILSLVDSNIE-----QLPEEMAQLTQLRLFDLSGCSKLKVIP-----PNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (1125)
Q Consensus 179 ---~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~ip-----~~~l~~L~~L~~L~l~~~~~~~~~~~~ 245 (1125)
+|++|++++|.+. .+|..+.++++|++|++++|. +.... ........+|++|++++|.+.....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-- 159 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC-- 159 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH--
Confidence 6888888888776 356677888888888888876 54321 1212335578888887776651110
Q ss_pred cccCCCCChhhhCCCCCCCEEEeecCCC
Q 001200 246 NVGRSNASLQELKLLSHLTTLEIQICDA 273 (1125)
Q Consensus 246 ~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 273 (1125)
......++.+++|++|++++|.+
T Consensus 160 -----~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 160 -----EPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp -----HHHHHHHHHCTTCCEEECCSSBC
T ss_pred -----HHHHHHHhhCCCCCEEECcCCCc
Confidence 11234456667778887777664
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=2e-17 Score=179.64 Aligned_cols=191 Identities=23% Similarity=0.334 Sum_probs=132.4
Q ss_pred CCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcc-cCCCCCCcEEEccC
Q 001200 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL-FHLPLNLQTLCLDR 165 (1125)
Q Consensus 87 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~-l~~l~~Lr~L~L~~ 165 (1125)
+.++++++++.+..+|..+. +.+++|++++|.+. .++...|.++++|++|++++|.+..+|.. |..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45677777777777776553 56777777777766 56666677777777777777777777543 46777777777777
Q ss_pred CCCCCc--ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCcccccc
Q 001200 166 CALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (1125)
Q Consensus 166 ~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~ 242 (1125)
|.+..+ ..+..+.+|++|++++|.+..+|. .++.+++|++|++++|. +..+|.+.++.+++|++|++++|.+.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~--- 170 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK--- 170 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS---
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCc---
Confidence 777765 456777777777777777776654 46777777777777776 77777666677777777777777665
Q ss_pred ccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCcc--ccccccEEEEE
Q 001200 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIF 291 (1125)
Q Consensus 243 ~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~ 291 (1125)
......+..+++|++|++++|.+..++... .+.+|+.+++.
T Consensus 171 --------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 171 --------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred --------EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence 222344667777777777777776666543 34555555543
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1.2e-17 Score=182.81 Aligned_cols=193 Identities=22% Similarity=0.235 Sum_probs=167.2
Q ss_pred CCCCCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEc
Q 001200 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (1125)
Q Consensus 84 ~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L 163 (1125)
...++++++++++.++++|..+. +.+++|++++|.+. .++...|.++++|++|++++|.+..+|.. +.+++|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 35689999999999999998774 78999999999987 67667789999999999999999988754 88999999999
Q ss_pred cCCCCCCc-ccccCCCCCcEEEccCCCCCCCc-hhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccc
Q 001200 164 DRCALGDI-AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWE 241 (1125)
Q Consensus 164 ~~~~l~~l-~~~~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~ 241 (1125)
++|.+..+ ..+..+++|++|++++|.++.+| ..|..+++|++|++++|. +..+|.+++..+++|++|++++|.+.
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-- 161 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT-- 161 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCS--
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCC--
Confidence 99999887 67889999999999999999997 468999999999999998 99999888899999999999999886
Q ss_pred cccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCcc-ccccccEEEEE
Q 001200 242 FEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKKLERYKIF 291 (1125)
Q Consensus 242 ~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~ 291 (1125)
......+..+++|+.|++++|.+..+|..+ ....|+.+.+.
T Consensus 162 ---------~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 162 ---------ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp ---------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred ---------ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence 223345688999999999999999888877 44566666554
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=3.8e-17 Score=177.38 Aligned_cols=190 Identities=23% Similarity=0.364 Sum_probs=165.0
Q ss_pred ecCCCccCCCcccCCCCCCEEEeecCCCcccCCC-C-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc
Q 001200 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (1125)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~-~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l 148 (1125)
..+.....+|. ....++++|++++|.+..++.. + ++++|++|++++|.+. .++..+|.++++|++|++++|.+..+
T Consensus 23 ~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~ 100 (270)
T 2o6q_A 23 CSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100 (270)
T ss_dssp CTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCC
T ss_pred ccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcC
Confidence 44555555553 4567899999999999998864 3 8999999999999987 78888899999999999999999988
Q ss_pred C-cccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCCchh-hccCCCCCEEeecCCCCCCccCccccCC
Q 001200 149 P-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSG 224 (1125)
Q Consensus 149 p-~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~ip~~~l~~ 224 (1125)
| ..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+..+|.. ++.+++|++|++++|. +..++...+.+
T Consensus 101 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 179 (270)
T 2o6q_A 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDK 179 (270)
T ss_dssp CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTT
T ss_pred CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhcc
Confidence 6 4678999999999999999877 5689999999999999999999865 7999999999999998 99999877899
Q ss_pred CCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCc
Q 001200 225 LSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (1125)
Q Consensus 225 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 274 (1125)
+++|++|++++|.+. ......+..+++|+.|++++|...
T Consensus 180 l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 180 LTELKTLKLDNNQLK-----------RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTCCEEECCSSCCS-----------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCcCEEECCCCcCC-----------cCCHHHhccccCCCEEEecCCCee
Confidence 999999999999876 223345788999999999999753
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=2.2e-19 Score=200.04 Aligned_cols=165 Identities=16% Similarity=0.106 Sum_probs=100.8
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCcccccCCCCCcEEEc
Q 001200 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (1125)
Q Consensus 106 ~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~L 185 (1125)
.+++|++|++++|.+. .++...|.++++|++|++++|.+..++. +..+++|++|++++|.++.+. ...+|++|++
T Consensus 32 ~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTCCEEEC
T ss_pred cCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCcCEEEC
Confidence 3456777777777665 4555556777777777777777765543 667777777777777654332 3367777777
Q ss_pred cCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhh-CCCCCCC
Q 001200 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQEL-KLLSHLT 264 (1125)
Q Consensus 186 s~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L-~~L~~L~ 264 (1125)
++|.+..++. ..+.+|++|++++|. +..++...++.+++|++|++++|.+. ...+..+ ..+++|+
T Consensus 107 ~~n~l~~~~~--~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 107 ANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID-----------TVNFAELAASSDTLE 172 (317)
T ss_dssp CSSCCSEEEE--CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCC-----------EEEGGGGGGGTTTCC
T ss_pred CCCccCCcCc--cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCC-----------cccHHHHhhccCcCC
Confidence 7777766653 235667777777776 66665544666777777777776655 1122333 3566677
Q ss_pred EEEeecCCCcccCCccccccccEEE
Q 001200 265 TLEIQICDAMILPKGLFSKKLERYK 289 (1125)
Q Consensus 265 ~L~l~~~~~~~~~~~~~~~~L~~l~ 289 (1125)
+|++++|.+..++....+.+|+.++
T Consensus 173 ~L~L~~N~l~~~~~~~~l~~L~~L~ 197 (317)
T 3o53_A 173 HLNLQYNFIYDVKGQVVFAKLKTLD 197 (317)
T ss_dssp EEECTTSCCCEEECCCCCTTCCEEE
T ss_pred EEECCCCcCcccccccccccCCEEE
Confidence 7777777665554433333333333
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=1.7e-17 Score=184.12 Aligned_cols=238 Identities=20% Similarity=0.183 Sum_probs=187.0
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc---CcccCCCCCCcEEEccC
Q 001200 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL---PSLFHLPLNLQTLCLDR 165 (1125)
Q Consensus 89 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l---p~~l~~l~~Lr~L~L~~ 165 (1125)
+.++.+++.++++|..+. ++|++|++++|.+. .+|..+|.++++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 467888888888888664 78999999999887 78888889999999999999988755 56777889999999999
Q ss_pred CCCCCc-ccccCCCCCcEEEccCCCCCCCch--hhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCcccccc
Q 001200 166 CALGDI-AIIGNLKKLEILSLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (1125)
Q Consensus 166 ~~l~~l-~~~~~L~~L~~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~ 242 (1125)
|.+..+ ..+..+++|++|++++|.+..+|. .+..+++|++|++++|. +..++...+.++++|++|++++|.+..
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 164 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE-- 164 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG--
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc--
Confidence 998877 668899999999999999888864 78999999999999998 776666668899999999999987751
Q ss_pred ccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCc-c-ccccccEEEEEeCCcc----cccCCCCCceEEEEeccc-C
Q 001200 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKG-L-FSKKLERYKIFIGDEW----DWSGNYKNKRVLKLKLYT-S 315 (1125)
Q Consensus 243 ~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~~~----~~~~~~~~l~~l~l~~~~-~ 315 (1125)
...+..+..+++|++|++++|.+..++.. + .+++|+.+++..+.+. ..+....+++.+++..+. .
T Consensus 165 --------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 165 --------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp --------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred --------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 02345677888999999999988777443 3 6788999888765542 234556788888887765 1
Q ss_pred C-hhHHHhhh-ccccEEEccccCCcc
Q 001200 316 N-VDEVIMQL-KGIEELYLDEVPGIK 339 (1125)
Q Consensus 316 ~-l~~~~~~l-~~L~~L~L~~~~~~~ 339 (1125)
. .+..+..+ ++|+.|+++++....
T Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 237 TSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp BCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ccCHHHHHhhhccCCEEEccCCCeec
Confidence 2 22233444 489999998876543
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=2.1e-17 Score=175.97 Aligned_cols=198 Identities=14% Similarity=0.203 Sum_probs=169.6
Q ss_pred ccCCCcccCCCCCCEEEeecCCCcccCCCC--CCCCccEEEecCCC-CCCCCChhhhcCCCCCcEEEeec-CCccccC-c
Q 001200 76 QIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRD-HSIKIPNHVFAGMSNLRGLALSN-MQFLSLP-S 150 (1125)
Q Consensus 76 ~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~--~~~~L~~L~l~~n~-~~~~l~~~~f~~l~~Lr~L~Ls~-~~i~~lp-~ 150 (1125)
...+|. ...++++|++++|.+..++... ++++|++|++++|. +. .++...|.++++|++|++++ |.+..+| .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 455555 6679999999999999998743 89999999999997 55 78888899999999999998 9999886 5
Q ss_pred ccCCCCCCcEEEccCCCCCCcccccCCCCCc---EEEccCC-CCCCCch-hhccCCCCC-EEeecCCCCCCccCccccCC
Q 001200 151 LFHLPLNLQTLCLDRCALGDIAIIGNLKKLE---ILSLVDS-NIEQLPE-EMAQLTQLR-LFDLSGCSKLKVIPPNLLSG 224 (1125)
Q Consensus 151 ~l~~l~~Lr~L~L~~~~l~~l~~~~~L~~L~---~L~Ls~~-~i~~lp~-~i~~L~~L~-~L~L~~~~~l~~ip~~~l~~ 224 (1125)
.|..+++|++|++++|.++.++.++.+.+|+ +|++++| .+..+|. .+..+.+|+ +|++++|. +..+|..++..
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~ 178 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG 178 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC
Confidence 7899999999999999999886688888888 9999999 9999886 589999999 99999998 88999885555
Q ss_pred CCCccEEEeecCc-cccccccccccCCCCChhhhCCC-CCCCEEEeecCCCcccCCccccccccEEEE
Q 001200 225 LSRLEDLYMGNTS-VKWEFEGLNVGRSNASLQELKLL-SHLTTLEIQICDAMILPKGLFSKKLERYKI 290 (1125)
Q Consensus 225 L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~L~~L-~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l 290 (1125)
.+|++|++++|. +. ......+..+ ++|+.|++++|.+..+|.. .+.+|+.|++
T Consensus 179 -~~L~~L~L~~n~~l~-----------~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 179 -TKLDAVYLNKNKYLT-----------VIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp -CEEEEEECTTCTTCC-----------EECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred -CCCCEEEcCCCCCcc-----------cCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 899999999994 65 2234567788 9999999999999888876 5667777664
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=5e-17 Score=179.82 Aligned_cols=190 Identities=15% Similarity=0.182 Sum_probs=164.5
Q ss_pred CCCCCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEc
Q 001200 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (1125)
Q Consensus 84 ~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L 163 (1125)
.++++++|++++|.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 36689999999999999886558999999999999887 5665 789999999999999999886 6899999999999
Q ss_pred cCCCCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccc
Q 001200 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (1125)
Q Consensus 164 ~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~ 243 (1125)
++|.++.+..+..+++|++|++++|.+..+|. ++.+.+|++|++++|. +..++. +..+++|++|++++|.+.
T Consensus 115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~---- 186 (308)
T 1h6u_A 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKIS---- 186 (308)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccC----
Confidence 99999988779999999999999999998876 8999999999999998 888876 899999999999999876
Q ss_pred cccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeCC
Q 001200 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGD 294 (1125)
Q Consensus 244 ~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~ 294 (1125)
.+..+..+++|++|++++|.+..+++...+.+|+.+++..+.
T Consensus 187 ---------~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 187 ---------DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp ---------CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred ---------cChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 233488899999999999998877754467778887776444
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=2e-18 Score=211.21 Aligned_cols=331 Identities=14% Similarity=0.081 Sum_probs=181.6
Q ss_pred cccccceeeccccc--cccccccCcccccCCCCcEEEEecCCCccccCCchhhhhccCCcEEEEecccc------cccee
Q 001200 529 VFPNLETLELCAIS--TEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSS------LESIV 600 (1125)
Q Consensus 529 ~~~~L~~L~l~~~~--l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~------l~~l~ 600 (1125)
.+++|++|++++|. +.......+. ..+++|++|++++|..++.+ ...+..+++|++|++..|.. +..++
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~~~~~l--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLV-TRCPNLKSLKLNRAVPLEKL--ATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHH-HHCTTCCEEECCTTSCHHHH--HHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHH-HhCCCCcEEecCCCCcHHHH--HHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 45677777777765 2111000000 12578888888888777663 34567788888888776642 11111
Q ss_pred cccccccccceeecCcccee-ccccCCccceecCCCccCCCCcccEEEEeccCceeeeecccccccccccCcccCCcccc
Q 001200 601 GKESGEEATTTFVFPKVTFL-KLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQA 679 (1125)
Q Consensus 601 ~~~~~~~~~~~~~~~~L~~L-~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 679 (1125)
.. ...+++|+.| .+.+... ..++.. ...+++|++|++++|. ++....
T Consensus 259 ~~--------l~~~~~L~~Ls~~~~~~~-~~l~~~--~~~~~~L~~L~L~~~~-l~~~~l-------------------- 306 (594)
T 2p1m_B 259 VA--------LSGCKELRCLSGFWDAVP-AYLPAV--YSVCSRLTTLNLSYAT-VQSYDL-------------------- 306 (594)
T ss_dssp HH--------HHTCTTCCEEECCBTCCG-GGGGGG--HHHHTTCCEEECTTCC-CCHHHH--------------------
T ss_pred HH--------HhcCCCcccccCCcccch-hhHHHH--HHhhCCCCEEEccCCC-CCHHHH--------------------
Confidence 00 0134555555 2222111 111110 0136778888888876 442110
Q ss_pred eeeeeeecCCceEeeeccccccccccccCCccccccccEEEeeec--------CCC--cccHHHHhhcCCccEEEEEcce
Q 001200 680 LFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVND--------ESE--NFRIGFLERFHNLEKLELRWSS 749 (1125)
Q Consensus 680 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c--------~~l--~~~~~~l~~l~~L~~L~i~c~~ 749 (1125)
..+-..+++|++|++++| ....... .....+++|++|++++| ..+ ........++++|+.|.+.|++
T Consensus 307 -~~~~~~~~~L~~L~l~~~-~~~~~l~-~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~ 383 (594)
T 2p1m_B 307 -VKLLCQCPKLQRLWVLDY-IEDAGLE-VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ 383 (594)
T ss_dssp -HHHHTTCTTCCEEEEEGG-GHHHHHH-HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC
T ss_pred -HHHHhcCCCcCEEeCcCc-cCHHHHH-HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC
Confidence 000034678888888877 3211000 01124678889988543 333 1122333468999999777887
Q ss_pred eEEEccChhhhhhhhhcccccEEecc-----CcccccccccC-C-CCcccccCcccEEEEecccCcccc-ccCcc-ccCC
Q 001200 750 YKEIFSNEEIVEHAEMLTQVKSLKLW-----ELSDLMYIWKQ-D-SKLDSITENLESLEVWWCENLINL-VPSSA-SFKN 820 (1125)
Q Consensus 750 l~~~~~~~~~~~~~~~l~~L~~L~l~-----~~~~L~~i~~~-~-~~~~~~l~~L~~L~i~~c~~L~~l-~~~~~-~~~~ 820 (1125)
+....... -...+++|++|++. +|..+...+.. + ......+++|+.|++++ .+... ...+. .+++
T Consensus 384 l~~~~~~~----l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~ 457 (594)
T 2p1m_B 384 MTNAALIT----IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKK 457 (594)
T ss_dssp CCHHHHHH----HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTT
T ss_pred cCHHHHHH----HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchh
Confidence 75421110 12357899999998 67777643210 0 00135678999999966 44321 11222 3788
Q ss_pred ccEEeEecCCCccccchhHhhhcCCCccEEEEccccchhhhhccCcccccccccccccceeccccCcccccccCCCcccc
Q 001200 821 LTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLK 900 (1125)
Q Consensus 821 L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~ 900 (1125)
|+.|++++|. +........+..+++|++|++++|+.-...+... ...+++|+.|++++|+. ..-........
T Consensus 458 L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~------~~~l~~L~~L~l~~~~~-~~~~~~~l~~~ 529 (594)
T 2p1m_B 458 MEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN------ASKLETMRSLWMSSCSV-SFGACKLLGQK 529 (594)
T ss_dssp CCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT------GGGGGGSSEEEEESSCC-BHHHHHHHHHH
T ss_pred ccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH------HHhCCCCCEEeeeCCCC-CHHHHHHHHHh
Confidence 9999999986 5444334445778999999999998522211111 11378999999999975 11111111134
Q ss_pred CCCccEEEEcc
Q 001200 901 FPSLEDLFVIE 911 (1125)
Q Consensus 901 ~~sL~~L~i~~ 911 (1125)
+|.|+...+.+
T Consensus 530 lp~l~i~~~~~ 540 (594)
T 2p1m_B 530 MPKLNVEVIDE 540 (594)
T ss_dssp CTTEEEEEECS
T ss_pred CCCCEEEEecC
Confidence 56665554443
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=2e-19 Score=212.66 Aligned_cols=151 Identities=15% Similarity=0.174 Sum_probs=75.6
Q ss_pred CCCEEEeecCCCcccCCC--C-CCCCccEEEecCCCCCCC---CChhhhcCCCCCcEEEeecCCcccc-Ccc-cCCCC--
Q 001200 87 NCPTIFLHDCKHWEVPEG--L-EYPQLEFFCMSPRDHSIK---IPNHVFAGMSNLRGLALSNMQFLSL-PSL-FHLPL-- 156 (1125)
Q Consensus 87 ~l~~L~l~~n~~~~l~~~--~-~~~~L~~L~l~~n~~~~~---l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~-l~~l~-- 156 (1125)
++++|++++|++...+.. + .+++|++|++++|.+... .....|..+++|++|++++|.+... +.. ...+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 456666666665433211 1 455666666666654311 0113345556666666666655431 111 11222
Q ss_pred --CCcEEEccCCCCCC-----c-ccccCCCCCcEEEccCCCCCCC-chhh-----ccCCCCCEEeecCCCCCCcc-----
Q 001200 157 --NLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIEQL-PEEM-----AQLTQLRLFDLSGCSKLKVI----- 217 (1125)
Q Consensus 157 --~Lr~L~L~~~~l~~-----l-~~~~~L~~L~~L~Ls~~~i~~l-p~~i-----~~L~~L~~L~L~~~~~l~~i----- 217 (1125)
+|++|++++|.+.. + ..+..+++|++|++++|.+... +..+ ..+.+|++|++++|. +...
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l 162 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPL 162 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHH
Confidence 46666666666552 1 4555666666666666655421 1111 124456666666665 4432
Q ss_pred CccccCCCCCccEEEeecCccc
Q 001200 218 PPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 218 p~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
+.. +..+++|++|++++|.+.
T Consensus 163 ~~~-l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 163 ASV-LRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHH-HHHCTTCCEEECCSSBCH
T ss_pred HHH-HhhCCCCCEEECcCCCcc
Confidence 222 445566666666666543
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=5.8e-17 Score=176.75 Aligned_cols=204 Identities=21% Similarity=0.237 Sum_probs=164.2
Q ss_pred CccCCCcccCCCCCCEEEeecCCCcccCCC-C-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC-cc
Q 001200 75 IQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SL 151 (1125)
Q Consensus 75 ~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~-~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~ 151 (1125)
.....|. ....++++|++++|.+..++.. + ++++|++|++++|.+. .++...|.++++|++|++++|.+..++ ..
T Consensus 18 ~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 18 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 3333443 4567899999999999988763 3 7899999999999887 677777899999999999999999875 67
Q ss_pred cCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCC--CchhhccCCCCCEEeecCCCCCCccCccccCCCCC
Q 001200 152 FHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSR 227 (1125)
Q Consensus 152 l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~ 227 (1125)
|..+++|++|++++|.+..+ ..++++++|++|++++|.+.. +|..++++++|++|++++|. +..++...+..+.+
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHT
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhh
Confidence 99999999999999998877 468999999999999999986 68899999999999999998 88887665777777
Q ss_pred cc----EEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCcc--ccccccEEEEEeC
Q 001200 228 LE----DLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIG 293 (1125)
Q Consensus 228 L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~ 293 (1125)
|+ +|++++|.+... ........+|+.|++++|.+..++..+ .+.+|+.+++..+
T Consensus 175 L~~l~l~L~ls~n~l~~~------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNFI------------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CTTCCEEEECCSSCCCEE------------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ccccceeeecCCCccccc------------CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 77 899999887621 122223347999999999988887765 4666777666533
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=8.7e-17 Score=172.42 Aligned_cols=174 Identities=21% Similarity=0.306 Sum_probs=152.4
Q ss_pred CCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC-cccCCCCCCcEEEccC
Q 001200 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDR 165 (1125)
Q Consensus 87 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~L~~ 165 (1125)
..++++++++.+..+|..+. +.++.|++++|.+. .++...|.++++|++|++++|.+..++ ..|..+++|++|+|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 46789999999999998775 78999999999987 577677899999999999999999874 5689999999999999
Q ss_pred CCCCCc--ccccCCCCCcEEEccCCCCCCCchh-hccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCcccccc
Q 001200 166 CALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (1125)
Q Consensus 166 ~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~ 242 (1125)
|.++.+ ..+..+.+|++|++++|.+..+|.. ++.+.+|++|++++|. +..+|.+.++.+++|++|++++|.+.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~--- 168 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQ--- 168 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS---
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCC---
Confidence 999876 5788999999999999999999865 6899999999999998 99999877899999999999999886
Q ss_pred ccccccCCCCChhhhCCCCCCCEEEeecCCCc
Q 001200 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (1125)
Q Consensus 243 ~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 274 (1125)
......+..+++|+.|++++|.+.
T Consensus 169 --------~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 169 --------SVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred --------ccCHHHHhCCCCCCEEEeeCCcee
Confidence 333456888999999999998864
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=5.4e-17 Score=177.05 Aligned_cols=218 Identities=20% Similarity=0.316 Sum_probs=168.3
Q ss_pred EEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC-cccCCCCCCcEEEccCCCC
Q 001200 90 TIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCAL 168 (1125)
Q Consensus 90 ~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~L~~~~l 168 (1125)
.++..+..+.++|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+..++ ..|..+++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC-CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 45555667778888664 68999999999887 677777899999999999999999885 4799999999999999999
Q ss_pred CCc--ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCc--cCccccCCCCCccEEEeecCccccccc
Q 001200 169 GDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (1125)
Q Consensus 169 ~~l--~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~--ip~~~l~~L~~L~~L~l~~~~~~~~~~ 243 (1125)
..+ ..+.++.+|++|++++|.+..++. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+....
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~- 165 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY- 165 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEEC-
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcCC-
Confidence 866 679999999999999999998876 69999999999999998 776 5655 899999999999999876211
Q ss_pred cccccCCCCChhhhCCCCCCC-EEEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHHHh
Q 001200 244 GLNVGRSNASLQELKLLSHLT-TLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIM 322 (1125)
Q Consensus 244 ~~~~~~~~~~~~~L~~L~~L~-~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~ 322 (1125)
...+..+..++.|. .|++++|.+..++....
T Consensus 166 -------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~----------------------------------------- 197 (276)
T 2z62_A 166 -------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF----------------------------------------- 197 (276)
T ss_dssp -------GGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-----------------------------------------
T ss_pred -------HHHhhhhhhccccceeeecCCCcccccCcccc-----------------------------------------
Confidence 12344455555555 89999998876655431
Q ss_pred hhccccEEEccccCCcccccccccccccccCcEEEeecCC
Q 001200 323 QLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (1125)
Q Consensus 323 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 362 (1125)
...+|+.|+++++.. +... ...+..+++|++|++++|+
T Consensus 198 ~~~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 198 KEIRLKELALDTNQL-KSVP-DGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CSCCEEEEECCSSCC-SCCC-TTTTTTCCSCCEEECCSSC
T ss_pred CCCcccEEECCCCce-eecC-HhHhcccccccEEEccCCc
Confidence 012466666666542 2222 2223678889999998886
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=8.8e-17 Score=175.93 Aligned_cols=159 Identities=24% Similarity=0.304 Sum_probs=141.3
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccCCCCCCcccccCCCCCcEEE
Q 001200 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILS 184 (1125)
Q Consensus 106 ~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~ 184 (1125)
++++++++++.++.+. .+|..++ +++++|++++|.+..+ |..|..+++|++|+|++|.++.+...+.+.+|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 5788999999999887 7887663 6899999999999987 578999999999999999999886668999999999
Q ss_pred ccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCC
Q 001200 185 LVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLT 264 (1125)
Q Consensus 185 Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 264 (1125)
+++|.+..+|..+..+.+|++|++++|. +..+|.+.+.++++|++|++++|.+. ......+..+++|+
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELK-----------TLPPGLLTPTPKLE 151 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCC-----------CCCTTTTTTCTTCC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCC-----------ccChhhcccccCCC
Confidence 9999999999999999999999999998 99999877999999999999999886 23345578899999
Q ss_pred EEEeecCCCcccCCcc
Q 001200 265 TLEIQICDAMILPKGL 280 (1125)
Q Consensus 265 ~L~l~~~~~~~~~~~~ 280 (1125)
.|++++|.+..++..+
T Consensus 152 ~L~L~~N~l~~l~~~~ 167 (290)
T 1p9a_G 152 KLSLANNNLTELPAGL 167 (290)
T ss_dssp EEECTTSCCSCCCTTT
T ss_pred EEECCCCcCCccCHHH
Confidence 9999999988777654
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=1e-15 Score=183.89 Aligned_cols=250 Identities=18% Similarity=0.121 Sum_probs=186.8
Q ss_pred EEecCCCccCCCcccCCCCCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc
Q 001200 69 FMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (1125)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l 148 (1125)
..+.+.....+|. ...+++++|++++|.+..+|. .+++|++|++++|.+. .+|. .+++|++|++++|.+..+
T Consensus 45 L~ls~n~L~~lp~-~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l 116 (622)
T 3g06_A 45 LNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHL 116 (622)
T ss_dssp EECCSSCCSCCCS-CCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCC
T ss_pred EEecCCCcCccCh-hhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCC
Confidence 4456666665554 345899999999999999988 6799999999999987 6775 689999999999999999
Q ss_pred CcccCCCCCCcEEEccCCCCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCc
Q 001200 149 PSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL 228 (1125)
Q Consensus 149 p~~l~~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L 228 (1125)
|. .+.+|++|++++|.++.++. .+++|++|++++|.+..+|. .+.+|+.|++++|. +..+| ..+++|
T Consensus 117 ~~---~l~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~-l~~l~----~~~~~L 183 (622)
T 3g06_A 117 PA---LPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQ-LTSLP----MLPSGL 183 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCC----CCCTTC
T ss_pred CC---CCCCcCEEECCCCCCCcCCC--CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCC-CCCCc----ccCCCC
Confidence 87 67899999999999988743 25899999999999999885 35789999999998 88888 346899
Q ss_pred cEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceEE
Q 001200 229 EDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVL 308 (1125)
Q Consensus 229 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l 308 (1125)
++|++++|.+.. +. ..+++|+.|++++|.+..++.. ..+|+.++++.+.+-.
T Consensus 184 ~~L~Ls~N~l~~-------------l~--~~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~----------- 235 (622)
T 3g06_A 184 QELSVSDNQLAS-------------LP--TLPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTS----------- 235 (622)
T ss_dssp CEEECCSSCCSC-------------CC--CCCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSC-----------
T ss_pred cEEECCCCCCCC-------------CC--CccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCc-----------
Confidence 999999998761 11 1247899999999998887764 3678887776554421
Q ss_pred EEecccCChhHHHhhhccccEEEccccCCcccccccccccccccCcEEEeecCCCeeEeeeCCcccccccccccceeecc
Q 001200 309 KLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLH 388 (1125)
Q Consensus 309 ~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~ 388 (1125)
++ ..+++|+.|+++++.. +.+ +. .+++|++|++++|. ++.++. .+..+++|+.|++.
T Consensus 236 --------lp---~~l~~L~~L~Ls~N~L-~~l-p~----~~~~L~~L~Ls~N~-L~~lp~-----~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 236 --------LP---VLPSELKELMVSGNRL-TSL-PM----LPSGLLSLSVYRNQ-LTRLPE-----SLIHLSSETTVNLE 292 (622)
T ss_dssp --------CC---CCCTTCCEEECCSSCC-SCC-CC----CCTTCCEEECCSSC-CCSCCG-----GGGGSCTTCEEECC
T ss_pred --------CC---CCCCcCcEEECCCCCC-CcC-Cc----ccccCcEEeCCCCC-CCcCCH-----HHhhccccCEEEec
Confidence 11 2345677777766532 222 11 45677777777774 333321 24556777777777
Q ss_pred cc
Q 001200 389 NL 390 (1125)
Q Consensus 389 ~~ 390 (1125)
++
T Consensus 293 ~N 294 (622)
T 3g06_A 293 GN 294 (622)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=3.6e-18 Score=189.71 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=21.9
Q ss_pred ccccEEEccccCCcccccccccccccccCcEEEeecCC
Q 001200 325 KGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (1125)
Q Consensus 325 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 362 (1125)
++|+.|+++++..... +. +..+++|++|++++|+
T Consensus 274 ~~L~~L~Ls~N~l~~~--p~--~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN--PS--PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SEEEEEECCSSCCCSC--CC--TTTSCEEEEEECTTCT
T ss_pred CCceEEECCCCCCCCC--hh--HhhCCCCCEEeccCCC
Confidence 4566666666665332 22 3677888888888876
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=3.9e-18 Score=189.93 Aligned_cols=240 Identities=14% Similarity=0.147 Sum_probs=185.4
Q ss_pred CCCCCEEEeecCCCcccCCC-C-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEE
Q 001200 85 LKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (1125)
Q Consensus 85 ~~~l~~L~l~~n~~~~l~~~-~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~ 162 (1125)
.+++++|++++|.+..++.. + .+++|++|++++|.+. .+++ |.++++|++|++++|.+..+|. .++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCE-EEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCC-cchh--hhhcCCCCEEECcCCccccccC----CCCcCEEE
Confidence 45899999999999988753 3 8999999999999886 3443 7899999999999999988763 38999999
Q ss_pred ccCCCCCCcccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCccCcccc-CCCCCccEEEeecCcccc
Q 001200 163 LDRCALGDIAIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLL-SGLSRLEDLYMGNTSVKW 240 (1125)
Q Consensus 163 L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l-~~L~~L~~L~l~~~~~~~ 240 (1125)
+++|.+..+.. ..+.+|++|++++|.+..++. .++.+++|++|++++|. +..++...+ ..+++|++|++++|.+..
T Consensus 106 l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 106 AANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 99999887632 237889999999999998864 78999999999999998 777654434 578999999999998861
Q ss_pred ccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHH
Q 001200 241 EFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEV 320 (1125)
Q Consensus 241 ~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~ 320 (1125)
+.....+++|++|++++|.+..++..+
T Consensus 184 -------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~---------------------------------------- 210 (317)
T 3o53_A 184 -------------VKGQVVFAKLKTLDLSSNKLAFMGPEF---------------------------------------- 210 (317)
T ss_dssp -------------EECCCCCTTCCEEECCSSCCCEECGGG----------------------------------------
T ss_pred -------------cccccccccCCEEECCCCcCCcchhhh----------------------------------------
Confidence 233446889999999999987665533
Q ss_pred HhhhccccEEEccccCCcccccccccccccccCcEEEeecCCCe-eEeeeCCcccccccccccceeecccccccce
Q 001200 321 IMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFI-LFIVDSMAWVRYNAFLLLESLVLHNLIHLEK 395 (1125)
Q Consensus 321 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l-~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 395 (1125)
..+++|+.|+++++.. +.+... +..+++|++|++++|+.. ..++ .....++.|+.|++.++..++.
T Consensus 211 -~~l~~L~~L~L~~N~l-~~l~~~--~~~l~~L~~L~l~~N~~~~~~~~-----~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 211 -QSAAGVTWISLRNNKL-VLIEKA--LRFSQNLEHFDLRGNGFHCGTLR-----DFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp -GGGTTCSEEECTTSCC-CEECTT--CCCCTTCCEEECTTCCCBHHHHH-----HHHHTCHHHHHHHHHHHHHHHS
T ss_pred -cccCcccEEECcCCcc-cchhhH--hhcCCCCCEEEccCCCccCcCHH-----HHHhccccceEEECCCchhccC
Confidence 2356777888877643 333333 367889999999998743 1111 2345678888888887766553
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=1.5e-16 Score=169.41 Aligned_cols=171 Identities=16% Similarity=0.241 Sum_probs=133.4
Q ss_pred EeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCC-ccccCc-ccCCCCCCcEEEccC-CCC
Q 001200 92 FLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ-FLSLPS-LFHLPLNLQTLCLDR-CAL 168 (1125)
Q Consensus 92 ~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~-i~~lp~-~l~~l~~Lr~L~L~~-~~l 168 (1125)
.+.++.+.++|. + .++|++|++++|.+. .++...|.++++|++|++++|. +..+|. +|..+++|++|++++ |.+
T Consensus 17 ~v~c~~l~~ip~-~-~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l 93 (239)
T 2xwt_C 17 RVTCKDIQRIPS-L-PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93 (239)
T ss_dssp EEEECSCSSCCC-C-CTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC
T ss_pred eeEccCccccCC-C-CCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe
Confidence 344445788888 3 458999999999887 7887788999999999999996 888864 788999999999998 888
Q ss_pred CCc--ccccCCCCCcEEEccCCCCCCCchhhccCCCCC---EEeecCCCCCCccCccccCCCCCcc-EEEeecCcccccc
Q 001200 169 GDI--AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLR---LFDLSGCSKLKVIPPNLLSGLSRLE-DLYMGNTSVKWEF 242 (1125)
Q Consensus 169 ~~l--~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~---~L~L~~~~~l~~ip~~~l~~L~~L~-~L~l~~~~~~~~~ 242 (1125)
+.+ ..|.++++|++|++++|.+..+|. ++.+.+|+ +|++++|..+..+|.+.+.++++|+ +|++++|.+...
T Consensus 94 ~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i- 171 (239)
T 2xwt_C 94 TYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV- 171 (239)
T ss_dssp CEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-
T ss_pred eEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-
Confidence 866 568889999999999999988886 88888888 9999998338888887788889999 999888876511
Q ss_pred ccccccCCCCChhhhCCCCCCCEEEeecCC-CcccCC
Q 001200 243 EGLNVGRSNASLQELKLLSHLTTLEIQICD-AMILPK 278 (1125)
Q Consensus 243 ~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~-~~~~~~ 278 (1125)
....+.. ++|+.|++++|. +..++.
T Consensus 172 ----------~~~~~~~-~~L~~L~L~~n~~l~~i~~ 197 (239)
T 2xwt_C 172 ----------QGYAFNG-TKLDAVYLNKNKYLTVIDK 197 (239)
T ss_dssp ----------CTTTTTT-CEEEEEECTTCTTCCEECT
T ss_pred ----------CHhhcCC-CCCCEEEcCCCCCcccCCH
Confidence 1122333 567788887774 554443
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=3.1e-16 Score=173.42 Aligned_cols=187 Identities=19% Similarity=0.236 Sum_probs=163.6
Q ss_pred ecCCCccCCCcccCCCCCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCc
Q 001200 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS 150 (1125)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~ 150 (1125)
+.+.....++....++++++|++++|.+..++....+++|++|++++|.+. .++ .|.++++|++|++++|.+..+|.
T Consensus 48 l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~~~ 124 (308)
T 1h6u_A 48 AFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK-NVS--AIAGLQSIKTLDLTSTQITDVTP 124 (308)
T ss_dssp CTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS-CCG--GGTTCTTCCEEECTTSCCCCCGG
T ss_pred eeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCC-Cch--hhcCCCCCCEEECCCCCCCCchh
Confidence 455555555555668999999999999999888558999999999999987 554 47899999999999999999875
Q ss_pred ccCCCCCCcEEEccCCCCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccE
Q 001200 151 LFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLED 230 (1125)
Q Consensus 151 ~l~~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~ 230 (1125)
+..+++|++|++++|.+..+..++.+.+|++|++++|.+..+|. +..+.+|++|++++|. +..++. +..+++|++
T Consensus 125 -l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~ 199 (308)
T 1h6u_A 125 -LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPNLIE 199 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCE
T ss_pred -hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCCCCE
Confidence 99999999999999999988779999999999999999999887 9999999999999998 888886 899999999
Q ss_pred EEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCC
Q 001200 231 LYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (1125)
Q Consensus 231 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~ 278 (1125)
|++++|.+. ....+..+++|+.|++++|.+...+.
T Consensus 200 L~L~~N~l~-------------~~~~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 200 VHLKNNQIS-------------DVSPLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp EECTTSCCC-------------BCGGGTTCTTCCEEEEEEEEEECCCE
T ss_pred EEccCCccC-------------ccccccCCCCCCEEEccCCeeecCCe
Confidence 999999886 12258899999999999998766554
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=5.9e-16 Score=168.11 Aligned_cols=177 Identities=23% Similarity=0.327 Sum_probs=152.9
Q ss_pred cCCCCCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCc-ccCCCCCCcEE
Q 001200 83 DMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTL 161 (1125)
Q Consensus 83 ~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~l~~l~~Lr~L 161 (1125)
..+++++.|++.+|.+..++....+++|++|++++|.+. .++ .|.++++|++|++++|.+..+|. .++.+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 346789999999999998887668999999999999887 444 47899999999999999998864 57899999999
Q ss_pred EccCCCCCCc--ccccCCCCCcEEEccCCCCCCCchh-hccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCcc
Q 001200 162 CLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 238 (1125)
Q Consensus 162 ~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~ 238 (1125)
++++|.+..+ ..++.+.+|++|++++|.+..+|.. ++++++|++|++++|. +..++...++.+++|++|++++|.+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcC
Confidence 9999999877 4589999999999999999988764 6899999999999998 8888888789999999999999988
Q ss_pred ccccccccccCCCCChhhhCCCCCCCEEEeecCCCc
Q 001200 239 KWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (1125)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 274 (1125)
. ......++.+++|+.|++++|.+.
T Consensus 194 ~-----------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 194 K-----------SVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp S-----------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C-----------ccCHHHHhCCcCCCEEEccCCCcc
Confidence 6 333455788999999999998753
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=3.5e-16 Score=171.37 Aligned_cols=173 Identities=24% Similarity=0.350 Sum_probs=154.1
Q ss_pred CCCCCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEc
Q 001200 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (1125)
Q Consensus 84 ~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L 163 (1125)
.++++++|++++|.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..+|. +..+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 46689999999999999977558999999999999987 5665 7899999999999999998874 899999999999
Q ss_pred cCCCCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccc
Q 001200 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (1125)
Q Consensus 164 ~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~ 243 (1125)
++|.+..+..+..+++|++|++++|.+..+ ..++.+++|++|++++|. +..++. +..+++|++|++++|.+.
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~---- 191 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS---- 191 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCC----
Confidence 999999998899999999999999999988 579999999999999998 888876 899999999999999886
Q ss_pred cccccCCCCChhhhCCCCCCCEEEeecCCCcccC
Q 001200 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILP 277 (1125)
Q Consensus 244 ~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 277 (1125)
.+..+..+++|+.|++++|.+...+
T Consensus 192 ---------~l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 ---------DLRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ---------BCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred ---------CChhhccCCCCCEEECcCCcccCCc
Confidence 2356899999999999998865543
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=9.9e-17 Score=189.19 Aligned_cols=150 Identities=17% Similarity=0.111 Sum_probs=80.3
Q ss_pred CCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCcccccCCCCCcEEEccC
Q 001200 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVD 187 (1125)
Q Consensus 108 ~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~Ls~ 187 (1125)
++|++|++++|.+. .+++..|.++++|++|+|++|.+..++. ++.+++|++|+|++|.++.+. ..++|++|++++
T Consensus 34 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~~ 108 (487)
T 3oja_A 34 WNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAAN 108 (487)
T ss_dssp GGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECCS
T ss_pred CCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECcC
Confidence 35666666666555 3444445566666666666666554433 555666666666666544332 225566666666
Q ss_pred CCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhC-CCCCCCEE
Q 001200 188 SNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELK-LLSHLTTL 266 (1125)
Q Consensus 188 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~-~L~~L~~L 266 (1125)
|.+..+|. ..+++|++|++++|. +..++...++.+++|++|++++|.+. ...+..+. .+++|+.|
T Consensus 109 N~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 109 NNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID-----------TVNFAELAASSDTLEHL 174 (487)
T ss_dssp SCCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCC-----------EEEGGGGGGGTTTCCEE
T ss_pred CcCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCC-----------CcChHHHhhhCCcccEE
Confidence 66555543 234556666666655 55444333555666666666665554 11233333 45556666
Q ss_pred EeecCCCccc
Q 001200 267 EIQICDAMIL 276 (1125)
Q Consensus 267 ~l~~~~~~~~ 276 (1125)
++++|.+..+
T Consensus 175 ~Ls~N~l~~~ 184 (487)
T 3oja_A 175 NLQYNFIYDV 184 (487)
T ss_dssp ECTTSCCCEE
T ss_pred ecCCCccccc
Confidence 6666555444
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=2.2e-17 Score=194.80 Aligned_cols=234 Identities=14% Similarity=0.140 Sum_probs=178.6
Q ss_pred CCCCCEEEeecCCCcccCCC-C-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEE
Q 001200 85 LKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (1125)
Q Consensus 85 ~~~l~~L~l~~n~~~~l~~~-~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~ 162 (1125)
.+++++|++++|.+..+++. + .+++|++|++++|.+.. +++ |.++++|++|++++|.+..+|.. ++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE-EEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC-Ccc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 34899999999999988753 3 89999999999999874 333 78999999999999999988743 8999999
Q ss_pred ccCCCCCCcccccCCCCCcEEEccCCCCCCC-chhhccCCCCCEEeecCCCCCCccCccccC-CCCCccEEEeecCcccc
Q 001200 163 LDRCALGDIAIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLS-GLSRLEDLYMGNTSVKW 240 (1125)
Q Consensus 163 L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~ip~~~l~-~L~~L~~L~l~~~~~~~ 240 (1125)
+++|.+..+.. ..+++|++|++++|.+..+ |..++.+++|++|++++|. +..++...+. .+++|++|++++|.+..
T Consensus 106 L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 106 AANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99999987732 3578999999999999987 5578999999999999998 7664433354 89999999999999861
Q ss_pred ccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeCCcccccCCCCCceEEEEecccCChhHH
Q 001200 241 EFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEV 320 (1125)
Q Consensus 241 ~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~ 320 (1125)
+.....+++|+.|++++|.+..+++.+
T Consensus 184 -------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------------------------------------- 210 (487)
T 3oja_A 184 -------------VKGQVVFAKLKTLDLSSNKLAFMGPEF---------------------------------------- 210 (487)
T ss_dssp -------------EECCCCCTTCCEEECCSSCCCEECGGG----------------------------------------
T ss_pred -------------ccccccCCCCCEEECCCCCCCCCCHhH----------------------------------------
Confidence 233456899999999999987665543
Q ss_pred HhhhccccEEEccccCCcccccccccccccccCcEEEeecCCCee-EeeeCCcccccccccccceeeccc
Q 001200 321 IMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFIL-FIVDSMAWVRYNAFLLLESLVLHN 389 (1125)
Q Consensus 321 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~-~l~~~~~~~~~~~~~~L~~L~l~~ 389 (1125)
..+++|+.|+++++... .++.. +..+++|+.|++++|+... .++ .....++.|+.+.+..
T Consensus 211 -~~l~~L~~L~Ls~N~l~-~lp~~--l~~l~~L~~L~l~~N~l~c~~~~-----~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 211 -QSAAGVTWISLRNNKLV-LIEKA--LRFSQNLEHFDLRGNGFHCGTLR-----DFFSKNQRVQTVAKQT 271 (487)
T ss_dssp -GGGTTCSEEECTTSCCC-EECTT--CCCCTTCCEEECTTCCBCHHHHH-----HHHTTCHHHHHHHHHH
T ss_pred -cCCCCccEEEecCCcCc-ccchh--hccCCCCCEEEcCCCCCcCcchH-----HHHHhCCCCcEEeccc
Confidence 23557777777775432 33333 3667889999999887431 110 1234466677666654
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=4.1e-16 Score=169.36 Aligned_cols=189 Identities=23% Similarity=0.319 Sum_probs=158.8
Q ss_pred ecCCCccCCCcccCCCCCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCc
Q 001200 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS 150 (1125)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~ 150 (1125)
+.+.....++....++++++|++++|.+..++....+++|++|++++|.+. .++...|.++++|++|++++|.+..+|.
T Consensus 48 l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 126 (272)
T 3rfs_A 48 ANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPD 126 (272)
T ss_dssp CTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred eCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCH
Confidence 455555555555668899999999999998875558999999999999987 7888888999999999999999998864
Q ss_pred -ccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCCchh-hccCCCCCEEeecCCCCCCccCccccCCCC
Q 001200 151 -LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLS 226 (1125)
Q Consensus 151 -~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~ 226 (1125)
.++.+++|++|++++|.++.+ ..++.+.+|++|++++|.+..+|.. ++.+++|++|++++|. +..++...++.++
T Consensus 127 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 205 (272)
T 3rfs_A 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLT 205 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCT
T ss_pred HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCc
Confidence 589999999999999999877 4589999999999999999988764 6999999999999998 8888887789999
Q ss_pred CccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCc-ccCCc
Q 001200 227 RLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM-ILPKG 279 (1125)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~-~~~~~ 279 (1125)
+|++|++++|.+. +.+++|+.|+++.|.+. .+|..
T Consensus 206 ~L~~L~l~~N~~~------------------~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 206 SLQYIWLHDNPWD------------------CTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TCCEEECCSSCBC------------------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred CCCEEEccCCCcc------------------ccCcHHHHHHHHHHhCCCcccCc
Confidence 9999999999765 23456777777766542 44443
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=2e-15 Score=161.76 Aligned_cols=167 Identities=20% Similarity=0.317 Sum_probs=146.8
Q ss_pred EecCCCccCCCcccCCCCCCEEEeecCCCcccCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccc
Q 001200 70 MLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS 147 (1125)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~--~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~ 147 (1125)
...+.....+|. ....++++|++++|.+..++... ++++|++|++++|.+. .++...|.++++|++|++++|.+..
T Consensus 20 ~~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~ 97 (251)
T 3m19_A 20 DCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLAS 97 (251)
T ss_dssp ECTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred ecCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccc
Confidence 345555555553 45679999999999999887653 8999999999999987 6777788999999999999999998
Q ss_pred cC-cccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCccCccccC
Q 001200 148 LP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLS 223 (1125)
Q Consensus 148 lp-~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~ 223 (1125)
+| ..|..+++|++|+|++|.++.+ ..++.+.+|++|++++|.+..+|. .++.+.+|++|++++|. +..+|.+.+.
T Consensus 98 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~ 176 (251)
T 3m19_A 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFD 176 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTT
T ss_pred cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHh
Confidence 86 5689999999999999999977 457999999999999999999987 68999999999999998 9999887799
Q ss_pred CCCCccEEEeecCccc
Q 001200 224 GLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 224 ~L~~L~~L~l~~~~~~ 239 (1125)
.+++|++|++++|.+.
T Consensus 177 ~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 177 RLGKLQTITLFGNQFD 192 (251)
T ss_dssp TCTTCCEEECCSCCBC
T ss_pred CCCCCCEEEeeCCcee
Confidence 9999999999999875
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=4.1e-15 Score=167.90 Aligned_cols=147 Identities=20% Similarity=0.264 Sum_probs=78.5
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcc-ccC-cccCCCCCCcE-EEccC
Q 001200 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLP-SLFHLPLNLQT-LCLDR 165 (1125)
Q Consensus 89 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~-~lp-~~l~~l~~Lr~-L~L~~ 165 (1125)
+.++.++++++++|..+ .+++++|+|++|.+. .+|..+|.++++|++|+|++|.+. .+| .+|.++++|+. +.+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45566666666666655 245666666666655 566666666666666666666653 343 34555655543 34444
Q ss_pred CCCCCc--ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCccCccccCCCC-CccEEEeecCc
Q 001200 166 CALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLS-RLEDLYMGNTS 237 (1125)
Q Consensus 166 ~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~-~L~~L~l~~~~ 237 (1125)
|.+..+ ..|..+++|++|++++|.+..+|. .+....++.+|++.++..+..+|...+..+. .+++|++++|.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 555544 445555566666666555555543 3344445555555544445555544333332 23344444433
No 88
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.63 E-value=3.7e-15 Score=156.88 Aligned_cols=149 Identities=26% Similarity=0.365 Sum_probs=132.9
Q ss_pred CCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC-cccCCCCCCcEEEccCC
Q 001200 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRC 166 (1125)
Q Consensus 88 l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~L~~~ 166 (1125)
.+.++.+++.+..+|..+. ++|++|++++|.+. .++...|.++++|++|+|++|.+..+| ..|..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 5678888999999998775 89999999999988 566677899999999999999999887 45789999999999999
Q ss_pred CCCCc--ccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccc
Q 001200 167 ALGDI--AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 167 ~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
.++.+ ..+..+.+|++|++++|.+..+|..+..+.+|++|++++|. +..+|.+.+..+++|++|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99877 45789999999999999999999999999999999999998 88998877889999999999998765
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=7e-15 Score=166.01 Aligned_cols=197 Identities=18% Similarity=0.188 Sum_probs=159.7
Q ss_pred EecCCCccCCCcccCCCCCCEEEeecCCCcccCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcE-EEeecCCcc
Q 001200 70 MLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRG-LALSNMQFL 146 (1125)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~--~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~-L~Ls~~~i~ 146 (1125)
...+.+...+|. ..++++++|++++|+++.++... ++++|++|+|++|.+...++..+|.++++++. +.+.+|.+.
T Consensus 15 ~C~~~~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 15 LCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp EEESTTCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred EecCCCCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 345556666663 56789999999999999999864 89999999999999876788889999998775 667789999
Q ss_pred cc-CcccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCC-CCCCCch-hhccC-CCCCEEeecCCCCCCccCcc
Q 001200 147 SL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDS-NIEQLPE-EMAQL-TQLRLFDLSGCSKLKVIPPN 220 (1125)
Q Consensus 147 ~l-p~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~-~i~~lp~-~i~~L-~~L~~L~L~~~~~l~~ip~~ 220 (1125)
.+ |..|..+++|++|++++|.+..+ ..+....++.+|++.++ .+..+|. .+..+ ..|++|++++|. ++.+|.+
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~ 172 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS 172 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT
T ss_pred ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChh
Confidence 88 57899999999999999999877 44566778889999774 7888875 45555 469999999998 9999988
Q ss_pred ccCCCCCccEEEeec-CccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCcc
Q 001200 221 LLSGLSRLEDLYMGN-TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL 280 (1125)
Q Consensus 221 ~l~~L~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~ 280 (1125)
+....+|++|++.+ |.+. ......++.+++|+.|++++|.+..+|.+.
T Consensus 173 -~f~~~~L~~l~l~~~n~l~-----------~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~ 221 (350)
T 4ay9_X 173 -AFNGTQLDELNLSDNNNLE-----------ELPNDVFHGASGPVILDISRTRIHSLPSYG 221 (350)
T ss_dssp -SSTTEEEEEEECTTCTTCC-----------CCCTTTTTTEECCSEEECTTSCCCCCCSSS
T ss_pred -hccccchhHHhhccCCccc-----------CCCHHHhccCcccchhhcCCCCcCccChhh
Confidence 45678899999976 4443 122345788999999999999988887653
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=1.4e-15 Score=182.67 Aligned_cols=175 Identities=23% Similarity=0.336 Sum_probs=156.4
Q ss_pred cCCCCCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEE
Q 001200 83 DMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (1125)
Q Consensus 83 ~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~ 162 (1125)
..+.+++.|++++|.+..++....+++|+.|+|++|.+. .++. |..+++|+.|+|++|.+..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 346789999999999999986568999999999999987 5665 789999999999999999887 799999999999
Q ss_pred ccCCCCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCcccccc
Q 001200 163 LDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (1125)
Q Consensus 163 L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~ 242 (1125)
|++|.+..+..+..+++|++|+|++|.+..+ ..++.+.+|++|+|++|. +..++. +..+++|++|++++|.+.
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~--- 188 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS--- 188 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred ecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCC---
Confidence 9999999998899999999999999999988 579999999999999998 888876 899999999999999886
Q ss_pred ccccccCCCCChhhhCCCCCCCEEEeecCCCcccCC
Q 001200 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (1125)
Q Consensus 243 ~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~ 278 (1125)
.+..+..+++|+.|++++|.+...|.
T Consensus 189 ----------~l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 189 ----------DLRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp ----------BCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred ----------CChHHccCCCCCEEEccCCcCcCCcc
Confidence 23578999999999999998765443
No 91
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=4.1e-15 Score=155.36 Aligned_cols=148 Identities=22% Similarity=0.298 Sum_probs=123.6
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccCCC
Q 001200 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (1125)
Q Consensus 89 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~~ 167 (1125)
+.++.+++.+.++|..+. +.|+.|++++|.+. .++...|.++++|++|+|++|.+..+ |.+|..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567888888888887764 78899999998887 67777788899999999999998877 7788899999999999998
Q ss_pred CCCc--ccccCCCCCcEEEccCCCCCCCc-hhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccc
Q 001200 168 LGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 168 l~~l--~~~~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
++.+ ..|..+.+|++|+|++|.+..++ ..|..+.+|++|++++|. +..++.+.+..+++|++|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8877 44788889999999999888774 578888889999998888 88888776888888888888888764
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=3.1e-15 Score=163.81 Aligned_cols=179 Identities=21% Similarity=0.237 Sum_probs=151.9
Q ss_pred cCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCcccc
Q 001200 95 DCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAII 174 (1125)
Q Consensus 95 ~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l~~~ 174 (1125)
.+.+..+.....+++|+.|++++|.+. .++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..+..+
T Consensus 33 ~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l 108 (291)
T 1h6t_A 33 KKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSL 108 (291)
T ss_dssp CSCTTSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGG
T ss_pred CCCcccccchhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhh
Confidence 333443333336889999999999886 5653 6889999999999999999876 99999999999999999999889
Q ss_pred cCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCCh
Q 001200 175 GNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASL 254 (1125)
Q Consensus 175 ~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 254 (1125)
+.+++|++|++++|.+..++ .++.+++|++|++++|. +..++. ++.+++|++|++++|.+. .+
T Consensus 109 ~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~-------------~~ 171 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS-------------DI 171 (291)
T ss_dssp TTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCC-------------CC
T ss_pred ccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCccc-------------cc
Confidence 99999999999999999885 69999999999999998 888843 899999999999999876 12
Q ss_pred hhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeCC
Q 001200 255 QELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGD 294 (1125)
Q Consensus 255 ~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~ 294 (1125)
..+..+++|+.|++++|.+..++....+.+|+.+++..+.
T Consensus 172 ~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 172 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred hhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence 2388999999999999999887664477788888776544
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=3.9e-15 Score=154.53 Aligned_cols=170 Identities=22% Similarity=0.352 Sum_probs=136.6
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCc-ccCCCCCCcEEEccCCC
Q 001200 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCA 167 (1125)
Q Consensus 89 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~l~~l~~Lr~L~L~~~~ 167 (1125)
+.++..++.+.++|..+ .++|++|++++|.+. .++..+|.++++|++|++++|.+..+|. .|..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 46777777888888665 468999999999887 6777778899999999999999988865 46889999999999999
Q ss_pred CCCc--ccccCCCCCcEEEccCCCCCCCchh-hccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCcccccccc
Q 001200 168 LGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (1125)
Q Consensus 168 l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~ 244 (1125)
++.+ ..++++.+|++|++++|.+..+|.. ++++.+|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-----
Confidence 8876 4478899999999999999888764 7889999999999987 88888877888999999999988654
Q ss_pred ccccCCCCChhhhCCCCCCCEEEeecCCCc-ccCCc
Q 001200 245 LNVGRSNASLQELKLLSHLTTLEIQICDAM-ILPKG 279 (1125)
Q Consensus 245 ~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~-~~~~~ 279 (1125)
+.+++|+.|+++.|.+. .+|..
T Consensus 162 -------------~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 162 -------------CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp -------------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred -------------cCCCCHHHHHHHHHhCCceeecc
Confidence 23456777777766643 44443
No 94
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=7.1e-15 Score=153.60 Aligned_cols=149 Identities=17% Similarity=0.276 Sum_probs=123.4
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCc-ccCCCCCCcEEEccCCC
Q 001200 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCA 167 (1125)
Q Consensus 89 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~l~~l~~Lr~L~L~~~~ 167 (1125)
+++++++|.+..+|..+ .+.+++|++++|.+..-.+..+|.++++|++|++++|.|+.++. +|..+++|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 58899999999888766 35678999999988733355678899999999999999988754 78899999999999999
Q ss_pred CCCc--ccccCCCCCcEEEccCCCCCCC-chhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccc
Q 001200 168 LGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 168 l~~l--~~~~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
++.+ ..|+.+.+|++|+|++|.+..+ |..+..+.+|++|++++|. +..++.+.+..+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8876 5588899999999999988877 5678889999999999988 88775555888888888888888765
No 95
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.59 E-value=5.8e-15 Score=163.79 Aligned_cols=190 Identities=18% Similarity=0.159 Sum_probs=135.1
Q ss_pred CCCCCEEEeecCCCc-ccCCC---CCCCCccEEEecCCCCCCCCChhhhcCC-----CCCcEEEeecCCccccC-cccCC
Q 001200 85 LKNCPTIFLHDCKHW-EVPEG---LEYPQLEFFCMSPRDHSIKIPNHVFAGM-----SNLRGLALSNMQFLSLP-SLFHL 154 (1125)
Q Consensus 85 ~~~l~~L~l~~n~~~-~l~~~---~~~~~L~~L~l~~n~~~~~l~~~~f~~l-----~~Lr~L~Ls~~~i~~lp-~~l~~ 154 (1125)
++++++|++++|.+. .+|.. ..+++|++|++++|.+. .+| ..|.++ ++|++|++++|.+..++ ..|+.
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA-TRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS-SSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc-chh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 568888888888887 46654 26788888888888877 345 445555 78888888888888775 77888
Q ss_pred CCCCcEEEccCCCCCC----cccc--cCCCCCcEEEccCCCCCCCc---h-hhccCCCCCEEeecCCCCCCccC-ccccC
Q 001200 155 PLNLQTLCLDRCALGD----IAII--GNLKKLEILSLVDSNIEQLP---E-EMAQLTQLRLFDLSGCSKLKVIP-PNLLS 223 (1125)
Q Consensus 155 l~~Lr~L~L~~~~l~~----l~~~--~~L~~L~~L~Ls~~~i~~lp---~-~i~~L~~L~~L~L~~~~~l~~ip-~~~l~ 223 (1125)
+++|++|++++|.+.. +..+ +.+.+|++|++++|.+..+| . .+.++++|++|++++|. +...+ ...+.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 250 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCD 250 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhh
Confidence 8888888888888542 2333 78888888888888888544 2 24577888888888887 65543 33356
Q ss_pred CCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEE
Q 001200 224 GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIF 291 (1125)
Q Consensus 224 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~ 291 (1125)
.+++|++|++++|.+.. .+..+. ++|++|++++|.+..+|....+++|+.+++.
T Consensus 251 ~l~~L~~L~Ls~N~l~~------------ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQ------------VPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLK 304 (312)
T ss_dssp CCTTCCEEECTTSCCSS------------CCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEECT
T ss_pred hcCCCCEEECCCCccCh------------hhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEecc
Confidence 77888888888887751 122333 6788888888888777552245555555543
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=7.3e-16 Score=171.02 Aligned_cols=182 Identities=15% Similarity=0.137 Sum_probs=115.0
Q ss_pred CCCEEEeecCCCcc-----cCCCCCCCCccEEEecCCCCCCCCChhhh-cCCCCCcEEEeecCCcccc-C----cccCCC
Q 001200 87 NCPTIFLHDCKHWE-----VPEGLEYPQLEFFCMSPRDHSIKIPNHVF-AGMSNLRGLALSNMQFLSL-P----SLFHLP 155 (1125)
Q Consensus 87 ~l~~L~l~~n~~~~-----l~~~~~~~~L~~L~l~~n~~~~~l~~~~f-~~l~~Lr~L~Ls~~~i~~l-p----~~l~~l 155 (1125)
.++++.+.++.+.. +.....+++|++|++++|.+....|..++ .++++|++|++++|.+... | ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46677776665531 11222456677777777777655555444 6777777778877777642 2 234567
Q ss_pred CCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCC---Cch--hhccCCCCCEEeecCCCCCCccCcc---ccCCC
Q 001200 156 LNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQ---LPE--EMAQLTQLRLFDLSGCSKLKVIPPN---LLSGL 225 (1125)
Q Consensus 156 ~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~---lp~--~i~~L~~L~~L~L~~~~~l~~ip~~---~l~~L 225 (1125)
++|++|+|++|.+..+ ..++.+++|++|++++|.+.. ++. .++++++|++|++++|. +..++.. .++.+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcC
Confidence 7777777777777654 567777777777777777643 322 23677777777777776 6655542 24566
Q ss_pred CCccEEEeecCccccccccccccCCCCChhhhCC---CCCCCEEEeecCCCcccCCcc
Q 001200 226 SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKL---LSHLTTLEIQICDAMILPKGL 280 (1125)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~---L~~L~~L~l~~~~~~~~~~~~ 280 (1125)
++|++|++++|.+. ...+..+.. +++|++|++++|.+..+|..+
T Consensus 224 ~~L~~L~Ls~N~l~-----------~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~ 270 (310)
T 4glp_A 224 VQPHSLDLSHNSLR-----------ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL 270 (310)
T ss_dssp CCCSSEECTTSCCC-----------CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC
T ss_pred CCCCEEECCCCCCC-----------ccchhhHHhccCcCcCCEEECCCCCCCchhhhh
Confidence 77777777777765 112223333 357777777777776665543
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=1.4e-14 Score=148.81 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=122.4
Q ss_pred CCCCCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccc-cCcccCCCCCCcEEE
Q 001200 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS-LPSLFHLPLNLQTLC 162 (1125)
Q Consensus 84 ~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~-lp~~l~~l~~Lr~L~ 162 (1125)
.++++++|++++|.+..++....+++|++|++++|.+. .++ .|..+++|++|++++|.+.. .|..++.+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 35689999999999998884448899999999998654 343 46889999999999999885 577888999999999
Q ss_pred ccCCCCCC--cccccCCCCCcEEEccCCC-CCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccc
Q 001200 163 LDRCALGD--IAIIGNLKKLEILSLVDSN-IEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 163 L~~~~l~~--l~~~~~L~~L~~L~Ls~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
+++|.+.. +..++.+++|++|++++|. +..+| .+..+++|++|++++|. +..++. +..+++|++|++++|.+.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCcccC
Confidence 99998886 4778889999999999997 88887 68889999999999988 888773 788889999998888764
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=7.2e-15 Score=162.96 Aligned_cols=192 Identities=15% Similarity=0.058 Sum_probs=145.4
Q ss_pred CCCCEEEeecCCCcc-cCCC---CCCCCccEEEecCCCCCCCCC---hhhhcCCCCCcEEEeecCCccccC-cccCCCCC
Q 001200 86 KNCPTIFLHDCKHWE-VPEG---LEYPQLEFFCMSPRDHSIKIP---NHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLN 157 (1125)
Q Consensus 86 ~~l~~L~l~~n~~~~-l~~~---~~~~~L~~L~l~~n~~~~~l~---~~~f~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~ 157 (1125)
.++++|++++|.+.. .+.. ..+++|++|++++|.+....+ ...+..+++|++|++++|.+..+| ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 459999999998874 3443 468899999999998875433 233457889999999999998774 67889999
Q ss_pred CcEEEccCCCCCC---c---ccccCCCCCcEEEccCCCCCCCchh----hccCCCCCEEeecCCCCCCcc-CccccCCC-
Q 001200 158 LQTLCLDRCALGD---I---AIIGNLKKLEILSLVDSNIEQLPEE----MAQLTQLRLFDLSGCSKLKVI-PPNLLSGL- 225 (1125)
Q Consensus 158 Lr~L~L~~~~l~~---l---~~~~~L~~L~~L~Ls~~~i~~lp~~----i~~L~~L~~L~L~~~~~l~~i-p~~~l~~L- 225 (1125)
|++|+|++|.+.. + ..++.+++|++|++++|.++.+|.. ++.+.+|++|++++|. +..+ |.. ++.+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHhcc
Confidence 9999999998653 2 3347889999999999999877653 5788999999999998 7666 655 5665
Q ss_pred --CCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeC
Q 001200 226 --SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIG 293 (1125)
Q Consensus 226 --~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~ 293 (1125)
++|++|++++|.+.. .+..+. ++|+.|++++|.+..+|....+++|+.+++..+
T Consensus 249 ~~~~L~~L~Ls~N~l~~------------lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQ------------VPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CCTTCCCEECCSSCCCS------------CCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSST
T ss_pred CcCcCCEEECCCCCCCc------------hhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCC
Confidence 699999999998761 122232 689999999999887765445667777766543
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=2.1e-15 Score=162.39 Aligned_cols=165 Identities=19% Similarity=0.200 Sum_probs=95.1
Q ss_pred CCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCC
Q 001200 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCA 167 (1125)
Q Consensus 88 l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~ 167 (1125)
+..+++..+.+.+++....+++|++|++++|.+. .++ .|..+++|++|++++|.+..+|. +..+++|++|++++|.
T Consensus 21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred HHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc
Confidence 3444445555555543235566666666666554 444 24556666666666666666554 6666666666666666
Q ss_pred CCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccc
Q 001200 168 LGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNV 247 (1125)
Q Consensus 168 l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 247 (1125)
++.+..+.. .+|++|++++|.+..+| .++++++|++|++++|. +..++. ++.+++|++|++++|.+.
T Consensus 97 l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~-------- 163 (263)
T 1xeu_A 97 LKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEIT-------- 163 (263)
T ss_dssp CSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCC--------
T ss_pred cCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCc--------
Confidence 665544444 66666666666666654 36666666666666665 555542 566666666666666554
Q ss_pred cCCCCChhhhCCCCCCCEEEeecCCCc
Q 001200 248 GRSNASLQELKLLSHLTTLEIQICDAM 274 (1125)
Q Consensus 248 ~~~~~~~~~L~~L~~L~~L~l~~~~~~ 274 (1125)
+ ...+..+++|+.|++++|.+.
T Consensus 164 ---~--~~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 164 ---N--TGGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ---B--CTTSTTCCCCCEEEEEEEEEE
T ss_pred ---c--hHHhccCCCCCEEeCCCCccc
Confidence 1 144556666666666666543
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=9.3e-15 Score=165.65 Aligned_cols=171 Identities=21% Similarity=0.261 Sum_probs=143.2
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhc-CCCCCcEEEeecCCccccC-cccCCCCCCcEEEccCC
Q 001200 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFA-GMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRC 166 (1125)
Q Consensus 89 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~-~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~L~~~ 166 (1125)
+.++++++.+..+|..+. +.++.|+|++|.+. .++...|. ++++|++|+|++|.|..++ .+|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~-~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP-SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC-TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC-CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 688999999999988763 56899999999887 67777777 8999999999999999885 57999999999999999
Q ss_pred CCCCc--ccccCCCCCcEEEccCCCCCCC-chhhccCCCCCEEeecCCCCCCccCcccc---CCCCCccEEEeecCcccc
Q 001200 167 ALGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLL---SGLSRLEDLYMGNTSVKW 240 (1125)
Q Consensus 167 ~l~~l--~~~~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~ip~~~l---~~L~~L~~L~l~~~~~~~ 240 (1125)
.+..+ ..|..+.+|++|+|++|.+..+ |..|..+.+|++|+|++|. +..+|.+.+ ..+++|++|++++|.+.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~- 176 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK- 176 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence 99877 5689999999999999999977 5679999999999999998 999998865 57899999999999886
Q ss_pred ccccccccCCCCChhhhCCCCC--CCEEEeecCCC
Q 001200 241 EFEGLNVGRSNASLQELKLLSH--LTTLEIQICDA 273 (1125)
Q Consensus 241 ~~~~~~~~~~~~~~~~L~~L~~--L~~L~l~~~~~ 273 (1125)
......+..++. |+.|++++|.+
T Consensus 177 ----------~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 ----------KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ----------CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ----------ccCHHHhhhccHhhcceEEecCCCc
Confidence 333456666665 47788888764
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=1.4e-14 Score=148.75 Aligned_cols=150 Identities=17% Similarity=0.215 Sum_probs=128.8
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCC--cccccCCCCCcEE
Q 001200 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEIL 183 (1125)
Q Consensus 106 ~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~--l~~~~~L~~L~~L 183 (1125)
.+++|++|++++|.+. .++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.. +..++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH--HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 5788999999999887 677 3688999999999999887765 78899999999999999985 4889999999999
Q ss_pred EccCCCCCC-CchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCC
Q 001200 184 SLVDSNIEQ-LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSH 262 (1125)
Q Consensus 184 ~Ls~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~ 262 (1125)
++++|.+.. .|..++++++|++|++++|..+..+|. +..+++|++|++++|.+. .+..+..+++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~-------------~~~~l~~l~~ 182 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH-------------DYRGIEDFPK 182 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC-------------CCTTGGGCSS
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc-------------ChHHhccCCC
Confidence 999999985 677899999999999999976888874 899999999999999876 2337888999
Q ss_pred CCEEEeecCCCc
Q 001200 263 LTTLEIQICDAM 274 (1125)
Q Consensus 263 L~~L~l~~~~~~ 274 (1125)
|++|++++|.+.
T Consensus 183 L~~L~l~~N~i~ 194 (197)
T 4ezg_A 183 LNQLYAFSQTIG 194 (197)
T ss_dssp CCEEEECBC---
T ss_pred CCEEEeeCcccC
Confidence 999999998864
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=4.6e-15 Score=167.02 Aligned_cols=103 Identities=21% Similarity=0.291 Sum_probs=51.4
Q ss_pred CCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCC--c-ccccCCCCCcEEEccCCCCC-CCchhhccCCCCCEEee
Q 001200 133 SNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD--I-AIIGNLKKLEILSLVDSNIE-QLPEEMAQLTQLRLFDL 208 (1125)
Q Consensus 133 ~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~--l-~~~~~L~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L 208 (1125)
+++++|++++|.+...+..+..+++|++|++++|.+.. + ..+..+++|++|++++|.+. ..|..++++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 45555555555555444344455555555555555442 2 34455555555555555544 33445555555555555
Q ss_pred cCCCCCCc--cCccccCCCCCccEEEeecC
Q 001200 209 SGCSKLKV--IPPNLLSGLSRLEDLYMGNT 236 (1125)
Q Consensus 209 ~~~~~l~~--ip~~~l~~L~~L~~L~l~~~ 236 (1125)
++|..+.. ++.. +.++++|++|++++|
T Consensus 150 ~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 150 SGCSGFSEFALQTL-LSSCSRLDELNLSWC 178 (336)
T ss_dssp TTCBSCCHHHHHHH-HHHCTTCCEEECCCC
T ss_pred CCCCCCCHHHHHHH-HhcCCCCCEEcCCCC
Confidence 55532432 3322 445555555555555
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=2.5e-14 Score=153.85 Aligned_cols=149 Identities=18% Similarity=0.243 Sum_probs=134.1
Q ss_pred ccCCCCCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEE
Q 001200 82 ADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTL 161 (1125)
Q Consensus 82 ~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L 161 (1125)
...++++++|++++|.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..+|... . .+|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKNLNGIP-S-ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCSCCTTCC-C-SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccCCcCccc-c-CcccEE
Confidence 3446799999999999999985458999999999999987 5665 799999999999999999988643 3 999999
Q ss_pred EccCCCCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccc
Q 001200 162 CLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 162 ~L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
++++|.++.+..++.+.+|++|++++|.++.+| .++.+.+|++|++++|. +..++. +..+++|++|++++|.+.
T Consensus 112 ~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGG--LTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTT--STTCCCCCEEEEEEEEEE
T ss_pred EccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHH--hccCCCCCEEeCCCCccc
Confidence 999999999988999999999999999999997 79999999999999998 888843 899999999999999876
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=5.4e-14 Score=146.85 Aligned_cols=147 Identities=16% Similarity=0.264 Sum_probs=128.0
Q ss_pred cEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCc-ccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccC
Q 001200 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVD 187 (1125)
Q Consensus 111 ~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~ 187 (1125)
+.++++++.+. .+|..+. ++|+.|++++|.|..+|. .|..+++|++|+|++|.+..+ ..|.++.+|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 57888888776 7886553 689999999999998864 799999999999999999876 7899999999999999
Q ss_pred CCCCCCchh-hccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEE
Q 001200 188 SNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTL 266 (1125)
Q Consensus 188 ~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L 266 (1125)
|.++.+|.. +..+.+|++|++++|. +..++.+.+..+++|++|++++|.+. ......+..+++|+.|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQ-----------TIAKGTFSPLRAIQTM 157 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-----------CCCTTTTTTCTTCCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCC-----------EECHHHHhCCCCCCEE
Confidence 999999875 6899999999999998 88887777999999999999999887 3334568889999999
Q ss_pred EeecCCC
Q 001200 267 EIQICDA 273 (1125)
Q Consensus 267 ~l~~~~~ 273 (1125)
++++|.+
T Consensus 158 ~L~~N~~ 164 (220)
T 2v9t_B 158 HLAQNPF 164 (220)
T ss_dssp ECCSSCE
T ss_pred EeCCCCc
Confidence 9999875
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=1.1e-13 Score=164.06 Aligned_cols=174 Identities=16% Similarity=0.188 Sum_probs=128.9
Q ss_pred CCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCC
Q 001200 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (1125)
Q Consensus 87 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~ 166 (1125)
+++.|++++|.+..+|..+ +++|++|++++|.+. .+| ..+++|++|++++|.|+.+|. +.. +|++|+|++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 6888888888888888766 377888888888877 677 346788888888888888887 655 8888888888
Q ss_pred CCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCcccccccccc
Q 001200 167 ALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLN 246 (1125)
Q Consensus 167 ~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 246 (1125)
.++.++. .+.+|++|++++|.++.+|. .+++|++|++++|. +..+|. +. ++|++|++++|.+..
T Consensus 131 ~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~------ 194 (571)
T 3cvr_A 131 QLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLES------ 194 (571)
T ss_dssp CCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSS------
T ss_pred cCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCc------
Confidence 8877754 67888888888888888876 57788888888887 777886 45 788888888887751
Q ss_pred ccCCCCChhhhCC-----CCCCCEEEeecCCCcccCCcc-ccccccEEEEEe
Q 001200 247 VGRSNASLQELKL-----LSHLTTLEIQICDAMILPKGL-FSKKLERYKIFI 292 (1125)
Q Consensus 247 ~~~~~~~~~~L~~-----L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~ 292 (1125)
.+. +.. ...|+.|++++|.+..+|..+ .+.+|+.+++..
T Consensus 195 ------lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 195 ------LPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILED 239 (571)
T ss_dssp ------CCC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCS
T ss_pred ------hhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeC
Confidence 111 222 122388888888888777765 555566555543
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=5.7e-14 Score=145.68 Aligned_cols=157 Identities=21% Similarity=0.292 Sum_probs=134.7
Q ss_pred CCCccCCCcccCCCCCCEEEeecCCCcccCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCc
Q 001200 73 NDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS 150 (1125)
Q Consensus 73 ~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~--~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~ 150 (1125)
+.+...+| .....++++|++++|.+..++... .+++|++|++++|.+. .++...|.++++|++|++++|.+..+|.
T Consensus 16 ~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 93 (208)
T 2o6s_A 16 SQGRTSVP-TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPN 93 (208)
T ss_dssp SSCCSSCC-SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCccCCC-CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCH
Confidence 34444444 345679999999999999888764 8999999999999987 7888889999999999999999998865
Q ss_pred -ccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCCchh-hccCCCCCEEeecCCCCCCccCccccCCCC
Q 001200 151 -LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLS 226 (1125)
Q Consensus 151 -~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~ 226 (1125)
.+..+++|++|++++|.+..+ ..+.++.+|++|++++|.+..+|.. +.++.+|++|++++|. + .+.++
T Consensus 94 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-~-------~~~~~ 165 (208)
T 2o6s_A 94 GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-W-------DCTCP 165 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-B-------CCCTT
T ss_pred hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC-e-------ecCCC
Confidence 478999999999999999877 4589999999999999999998865 7999999999999996 2 35667
Q ss_pred CccEEEeecCccc
Q 001200 227 RLEDLYMGNTSVK 239 (1125)
Q Consensus 227 ~L~~L~l~~~~~~ 239 (1125)
+|++|+++.|.+.
T Consensus 166 ~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 166 GIRYLSEWINKHS 178 (208)
T ss_dssp TTHHHHHHHHHCT
T ss_pred CHHHHHHHHHhCC
Confidence 8999998888776
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.52 E-value=3.5e-14 Score=160.93 Aligned_cols=168 Identities=23% Similarity=0.275 Sum_probs=144.8
Q ss_pred EEecCCCccCCCcccCCCCCCEEEeecCCCcccCCCC---CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCc
Q 001200 69 FMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL---EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQF 145 (1125)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~---~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i 145 (1125)
....+.....+|. .....+++|++++|.+..++... ++++|++|++++|.+. .++...|.++++|++|+|++|.+
T Consensus 23 l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 23 LSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp EECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcC
Confidence 3345556666653 56778999999999999988764 7899999999999987 78878899999999999999999
Q ss_pred cccC-cccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCCchhh----ccCCCCCEEeecCCCCCCccC
Q 001200 146 LSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEEM----AQLTQLRLFDLSGCSKLKVIP 218 (1125)
Q Consensus 146 ~~lp-~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~~i----~~L~~L~~L~L~~~~~l~~ip 218 (1125)
..+| ..|..+++|++|+|++|.+..+ ..|..+.+|++|+|++|.+..+|..+ ..+.+|++|+|++|. +..+|
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~ 179 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLP 179 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccC
Confidence 9885 4689999999999999999876 68999999999999999999999765 679999999999998 99999
Q ss_pred ccccCCCCC--ccEEEeecCccc
Q 001200 219 PNLLSGLSR--LEDLYMGNTSVK 239 (1125)
Q Consensus 219 ~~~l~~L~~--L~~L~l~~~~~~ 239 (1125)
...+..+.. |+.|++.+|.+.
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHHhhhccHhhcceEEecCCCcc
Confidence 776788887 488999998765
No 108
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=1.5e-15 Score=174.44 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=19.9
Q ss_pred CCCCCCcEEEccCCCCCC-----c-ccccCCCCCcEEEccCCCCC
Q 001200 153 HLPLNLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIE 191 (1125)
Q Consensus 153 ~~l~~Lr~L~L~~~~l~~-----l-~~~~~L~~L~~L~Ls~~~i~ 191 (1125)
..+++|++|+|++|.+.. + ..+..+++|++|+|++|.+.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 445555555555555443 2 34455555555555555543
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=2.2e-14 Score=172.21 Aligned_cols=183 Identities=21% Similarity=0.226 Sum_probs=153.3
Q ss_pred EEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCC
Q 001200 90 TIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALG 169 (1125)
Q Consensus 90 ~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~ 169 (1125)
.+.+..+.+..+.....+++|+.|++++|.+. .++. |..+++|+.|+|++|.+..+|. +..+++|++|+|++|.+.
T Consensus 25 ~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 25 KDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HHHTTCSCTTSEECHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred HHhccCCCcccccchhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC
Confidence 33444444554444447889999999999886 5663 6899999999999999999876 899999999999999999
Q ss_pred CcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccC
Q 001200 170 DIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGR 249 (1125)
Q Consensus 170 ~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 249 (1125)
.+..++.+.+|++|+|++|.+..+| .+..|.+|++|+|++|. +..++. ++.+++|++|++++|.+.
T Consensus 101 ~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~---------- 166 (605)
T 1m9s_A 101 DLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS---------- 166 (605)
T ss_dssp CCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCC----------
T ss_pred CChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCC----------
Confidence 9989999999999999999999886 69999999999999998 888843 899999999999999876
Q ss_pred CCCChhhhCCCCCCCEEEeecCCCcccCCccccccccEEEEEeC
Q 001200 250 SNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIG 293 (1125)
Q Consensus 250 ~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~ 293 (1125)
.+..+..+++|+.|++++|.+..++....+.+|+.|++..+
T Consensus 167 ---~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 167 ---DIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp ---CCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred ---CchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCC
Confidence 12238999999999999999988765446777887776543
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=1.3e-13 Score=145.11 Aligned_cols=148 Identities=22% Similarity=0.317 Sum_probs=129.0
Q ss_pred ccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEcc
Q 001200 110 LEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLV 186 (1125)
Q Consensus 110 L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls 186 (1125)
-+.++++++.+. .+|..+ .++|++|++++|.+..+ |..|..+++|++|+|++|.+..+ ..+..+.+|++|+|+
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 457888888776 788655 38899999999999987 77899999999999999999877 558999999999999
Q ss_pred CCCCCCCchh-hccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCE
Q 001200 187 DSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (1125)
Q Consensus 187 ~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 265 (1125)
+|.++.+|.. +..+.+|++|++++|. +..+|.. +..+++|++|++++|.+. ......+..+++|+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLK-----------SIPHGAFDRLSSLTH 163 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCC-----------CCCTTTTTTCTTCCE
T ss_pred CCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCC-----------ccCHHHHhCCCCCCE
Confidence 9999999764 6899999999999998 9999988 799999999999999886 223356888999999
Q ss_pred EEeecCCCc
Q 001200 266 LEIQICDAM 274 (1125)
Q Consensus 266 L~l~~~~~~ 274 (1125)
|++++|.+.
T Consensus 164 L~l~~N~~~ 172 (229)
T 3e6j_A 164 AYLFGNPWD 172 (229)
T ss_dssp EECTTSCBC
T ss_pred EEeeCCCcc
Confidence 999998764
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=1.2e-13 Score=144.36 Aligned_cols=147 Identities=18% Similarity=0.257 Sum_probs=127.9
Q ss_pred cEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC--cccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEcc
Q 001200 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP--SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLV 186 (1125)
Q Consensus 111 ~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp--~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls 186 (1125)
+++++++|.+. .+|..+ ...+++|++++|.+..++ ..|..+++|++|+|++|.++.+ ..|+++.+|++|+|+
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 58999999887 688655 345789999999999884 3589999999999999999977 579999999999999
Q ss_pred CCCCCCCch-hhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCE
Q 001200 187 DSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (1125)
Q Consensus 187 ~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 265 (1125)
+|.+..+|. .|+.+.+|++|++++|. +..++...+..+++|++|++++|.+. ...+..+..+++|+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT-----------TVAPGAFDTLHSLST 157 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCC-----------CBCTTTTTTCTTCCE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCC-----------EECHHHhcCCCCCCE
Confidence 999998875 58999999999999998 88886666999999999999999887 334567889999999
Q ss_pred EEeecCCC
Q 001200 266 LEIQICDA 273 (1125)
Q Consensus 266 L~l~~~~~ 273 (1125)
|++++|.+
T Consensus 158 L~L~~N~l 165 (220)
T 2v70_A 158 LNLLANPF 165 (220)
T ss_dssp EECCSCCE
T ss_pred EEecCcCC
Confidence 99999875
No 112
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=4.4e-15 Score=167.14 Aligned_cols=220 Identities=16% Similarity=0.136 Sum_probs=149.7
Q ss_pred CCCEEEeecCCCcccCCCC-CC--CCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccc--cCcccCCCCCCcEE
Q 001200 87 NCPTIFLHDCKHWEVPEGL-EY--PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS--LPSLFHLPLNLQTL 161 (1125)
Q Consensus 87 ~l~~L~l~~n~~~~l~~~~-~~--~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~--lp~~l~~l~~Lr~L 161 (1125)
..++++++++.+. +..+ .+ +.++.|++.+|.+....+ .+ ..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLA-EH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCC-SC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccch-hh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4678888877664 1112 33 788888888887764433 33 468889999998888763 67778888899999
Q ss_pred EccCCCCCCc--ccccCCCCCcEEEccCC-CCC--CCchhhccCCCCCEEeecCCCCCCc--cCccccCCCC-CccEEEe
Q 001200 162 CLDRCALGDI--AIIGNLKKLEILSLVDS-NIE--QLPEEMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLS-RLEDLYM 233 (1125)
Q Consensus 162 ~L~~~~l~~l--~~~~~L~~L~~L~Ls~~-~i~--~lp~~i~~L~~L~~L~L~~~~~l~~--ip~~~l~~L~-~L~~L~l 233 (1125)
++++|.+... ..++.+++|++|++++| .++ .+|..+.++++|++|++++|..+.. ++.. +..++ +|++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEEC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEe
Confidence 9998887632 67788889999999988 677 3677788888999999988833664 4443 67788 8999998
Q ss_pred ecCccccccccccccCCCCChhhhCCCCCCCEEEeecCC-Ccc-cCCccccccccEEEEEeCCcccccCCCCCceEEEEe
Q 001200 234 GNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD-AMI-LPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLK 311 (1125)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~-~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~ 311 (1125)
++|.+... ....+..++.+++|++|++++|. +.. .+.
T Consensus 203 ~~~~~~~~--------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--------------------------------- 241 (336)
T 2ast_B 203 SGYRKNLQ--------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ--------------------------------- 241 (336)
T ss_dssp CSCGGGSC--------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGG---------------------------------
T ss_pred CCCcccCC--------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH---------------------------------
Confidence 88842100 01123456678888999988877 321 111
Q ss_pred cccCChhHHHhhhccccEEEccccCCcccccccccccccccCcEEEeecC
Q 001200 312 LYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNN 361 (1125)
Q Consensus 312 ~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 361 (1125)
.+..+++|+.|+++++....+... ..+..+++|++|++++|
T Consensus 242 --------~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 242 --------EFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp --------GGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred --------HHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc
Confidence 112356777777777653322111 12356788888888877
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=5e-13 Score=158.44 Aligned_cols=174 Identities=19% Similarity=0.220 Sum_probs=146.0
Q ss_pred EEecCCCccCCCcccCCCCCCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc
Q 001200 69 FMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (1125)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l 148 (1125)
..+.+.....+|. ...+++++|++++|.+..+| ..+++|++|++++|.+. .+|. |.+ +|++|++++|.++.+
T Consensus 64 L~Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~-~ip~--l~~--~L~~L~Ls~N~l~~l 135 (571)
T 3cvr_A 64 LQLNRLNLSSLPD-NLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLS-TLPE--LPA--SLKHLDVDNNQLTML 135 (571)
T ss_dssp EECCSSCCSCCCS-CCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCS-CCCC--CCT--TCCEEECCSSCCSCC
T ss_pred EEeCCCCCCccCH-hHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCC-Ccch--hhc--CCCEEECCCCcCCCC
Confidence 4455666555554 34689999999999999999 45799999999999988 4887 444 999999999999999
Q ss_pred CcccCCCCCCcEEEccCCCCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCc
Q 001200 149 PSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL 228 (1125)
Q Consensus 149 p~~l~~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L 228 (1125)
|. .+++|++|++++|.++.++. .+.+|++|++++|.+..+|. ++ .+|++|++++|. +..+|. +.. +|
T Consensus 136 p~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L 202 (571)
T 3cvr_A 136 PE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RN 202 (571)
T ss_dssp CC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC-----
T ss_pred CC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hh
Confidence 87 68999999999999988755 68999999999999999998 76 999999999998 999997 454 77
Q ss_pred -------cEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcc
Q 001200 229 -------EDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMI 275 (1125)
Q Consensus 229 -------~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~ 275 (1125)
++|++++|.+. ..+..+..+++|+.|++++|.+..
T Consensus 203 ~~~~~~L~~L~Ls~N~l~------------~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 203 HHSEETEIFFRCRENRIT------------HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp -----CCEEEECCSSCCC------------CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred hcccccceEEecCCCcce------------ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 99999999886 245567779999999999998743
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=1.4e-13 Score=137.22 Aligned_cols=138 Identities=28% Similarity=0.235 Sum_probs=101.6
Q ss_pred CCCCcEEEeecCCcc--ccCcccCCCCCCcEEEccCCCCCCcccccCCCCCcEEEccCCCCCC-CchhhccCCCCCEEee
Q 001200 132 MSNLRGLALSNMQFL--SLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQ-LPEEMAQLTQLRLFDL 208 (1125)
Q Consensus 132 l~~Lr~L~Ls~~~i~--~lp~~l~~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~-lp~~i~~L~~L~~L~L 208 (1125)
.++|++|++++|.+. .+|..+..+++|++|++++|.++.+..++.+++|++|++++|.+.. +|..++++++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 466788888888877 7777777788888888888887777777788888888888888776 6766777888888888
Q ss_pred cCCCCCCccCc-cccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCC
Q 001200 209 SGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (1125)
Q Consensus 209 ~~~~~l~~ip~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~ 278 (1125)
++|. +..+|. ..+..+++|++|++++|.+...+ ......+..+++|++|+++.|....+|.
T Consensus 103 s~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~--------~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 103 SGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLN--------DYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp BSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTST--------THHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred cCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchH--------HHHHHHHHhCccCcEecCCCCChhhccc
Confidence 8887 777652 33778888888888888765100 0011367788888888888887766654
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=8.2e-15 Score=166.38 Aligned_cols=128 Identities=15% Similarity=0.189 Sum_probs=65.2
Q ss_pred CccEEEecCCCCCCCCCh----hhhcCCC-CCcEEEeecCCcccc-CcccCCC-----CCCcEEEccCCCCCCc--c---
Q 001200 109 QLEFFCMSPRDHSIKIPN----HVFAGMS-NLRGLALSNMQFLSL-PSLFHLP-----LNLQTLCLDRCALGDI--A--- 172 (1125)
Q Consensus 109 ~L~~L~l~~n~~~~~l~~----~~f~~l~-~Lr~L~Ls~~~i~~l-p~~l~~l-----~~Lr~L~L~~~~l~~l--~--- 172 (1125)
+|++|++++|.+. ..+. ..|.+++ +|++|++++|.+... +..+..+ ++|++|+|++|.++.. .
T Consensus 23 ~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 23 GVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 3666666666544 3333 4455555 566666666665543 2333332 5666666666665432 1
Q ss_pred -cccCC-CCCcEEEccCCCCCCCch-h----hcc-CCCCCEEeecCCCCCCc-----cCccccCCCC-CccEEEeecCcc
Q 001200 173 -IIGNL-KKLEILSLVDSNIEQLPE-E----MAQ-LTQLRLFDLSGCSKLKV-----IPPNLLSGLS-RLEDLYMGNTSV 238 (1125)
Q Consensus 173 -~~~~L-~~L~~L~Ls~~~i~~lp~-~----i~~-L~~L~~L~L~~~~~l~~-----ip~~~l~~L~-~L~~L~l~~~~~ 238 (1125)
.+..+ .+|++|++++|.+...+. . +.. .++|++|++++|. +.. ++.. +..+. +|++|++++|.+
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI-LAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH-HHTSCTTCCEEECTTSCG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH-HhcCCccccEeeecCCCC
Confidence 23333 566666666666554432 2 222 2466666666665 442 2221 23333 666666666655
Q ss_pred c
Q 001200 239 K 239 (1125)
Q Consensus 239 ~ 239 (1125)
.
T Consensus 180 ~ 180 (362)
T 3goz_A 180 A 180 (362)
T ss_dssp G
T ss_pred c
Confidence 4
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=1.3e-14 Score=166.66 Aligned_cols=125 Identities=19% Similarity=0.193 Sum_probs=64.0
Q ss_pred eecCCccccCcccCCCCCCcEEEccCCCCCCc------ccccCCCCCcEEEccCCCCCC----Cchhh-------ccCCC
Q 001200 140 LSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI------AIIGNLKKLEILSLVDSNIEQ----LPEEM-------AQLTQ 202 (1125)
Q Consensus 140 Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l------~~~~~L~~L~~L~Ls~~~i~~----lp~~i-------~~L~~ 202 (1125)
++...+..++..+..+++|++|+|++|.+... ..+..+++|++|+|++|.+.. +|.++ .++++
T Consensus 16 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 16 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp CCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 33333444555555555555555555554421 234455556666665554332 23333 45666
Q ss_pred CCEEeecCCCCCCc-----cCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCC---------CCCCEEEe
Q 001200 203 LRLFDLSGCSKLKV-----IPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLL---------SHLTTLEI 268 (1125)
Q Consensus 203 L~~L~L~~~~~l~~-----ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L---------~~L~~L~l 268 (1125)
|++|++++|. +.. +|.. +..+++|++|++++|.+...+. ......+..+ ++|++|++
T Consensus 96 L~~L~Ls~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~-------~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 96 LHTVRLSDNA-FGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAG-------AKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp CCEEECCSCC-CCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHH-------HHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred ccEEECCCCc-CCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHH-------HHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 6666666665 443 3433 4566666666666665531100 0011123333 77888888
Q ss_pred ecCCC
Q 001200 269 QICDA 273 (1125)
Q Consensus 269 ~~~~~ 273 (1125)
++|.+
T Consensus 167 ~~n~l 171 (386)
T 2ca6_A 167 GRNRL 171 (386)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87765
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.43 E-value=1e-15 Score=182.83 Aligned_cols=190 Identities=16% Similarity=0.130 Sum_probs=151.9
Q ss_pred CCCCCCEEEeecCCCcccCCCC-CCCCccEEEecCCC-------------CCCCCChhhhcCCCCCcEEE-eecCCcccc
Q 001200 84 MLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRD-------------HSIKIPNHVFAGMSNLRGLA-LSNMQFLSL 148 (1125)
Q Consensus 84 ~~~~l~~L~l~~n~~~~l~~~~-~~~~L~~L~l~~n~-------------~~~~l~~~~f~~l~~Lr~L~-Ls~~~i~~l 148 (1125)
..+++++|++++|.++.+|..+ .+++|+.|++++|. .. ..++..+.++++|+.|+ ++.|.+..+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~-~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc-cCCHHHHHHHHhcccCcchhhcccchh
Confidence 3567888999999999998887 78889999886653 23 34445667888888888 555543333
Q ss_pred Cc------ccCC--CCCCcEEEccCCCCCCcccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCcc
Q 001200 149 PS------LFHL--PLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPN 220 (1125)
Q Consensus 149 p~------~l~~--l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~ 220 (1125)
+. .+.. ...|++|+|++|.++.++.++.+.+|++|+|++|.++.+|..+++|++|++|+|++|. +..+| .
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~ 503 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G 503 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c
Confidence 21 1111 1259999999999998866999999999999999999999999999999999999998 88898 4
Q ss_pred ccCCCCCccEEEeecCccccccccccccCCCCC-hhhhCCCCCCCEEEeecCCCcccCCcc-----ccccccEE
Q 001200 221 LLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNAS-LQELKLLSHLTTLEIQICDAMILPKGL-----FSKKLERY 288 (1125)
Q Consensus 221 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~L~~L~~L~~L~l~~~~~~~~~~~~-----~~~~L~~l 288 (1125)
++++++|++|++++|.+. ... +..++.+++|+.|++++|.+...++.. .+++|+.|
T Consensus 504 -l~~l~~L~~L~Ls~N~l~-----------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 504 -VANLPRLQELLLCNNRLQ-----------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp -GTTCSSCCEEECCSSCCC-----------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred -cCCCCCCcEEECCCCCCC-----------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 899999999999999887 333 678999999999999999998877654 24566655
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=3.6e-13 Score=134.30 Aligned_cols=131 Identities=23% Similarity=0.290 Sum_probs=83.1
Q ss_pred CCCCCEEEeecCCCc--ccCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccc-cCcccCCCCCCcE
Q 001200 85 LKNCPTIFLHDCKHW--EVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS-LPSLFHLPLNLQT 160 (1125)
Q Consensus 85 ~~~l~~L~l~~n~~~--~l~~~~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~-lp~~l~~l~~Lr~ 160 (1125)
++++++|++++|.+. .+|..+ .+++|++|++++|.+. .+ ..|..+++|++|++++|.+.. +|..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 356777777777776 666554 5666777777666655 33 345666666667766666665 5555555666666
Q ss_pred EEccCCCCCCc---ccccCCCCCcEEEccCCCCCCCch----hhccCCCCCEEeecCCCCCCccCc
Q 001200 161 LCLDRCALGDI---AIIGNLKKLEILSLVDSNIEQLPE----EMAQLTQLRLFDLSGCSKLKVIPP 219 (1125)
Q Consensus 161 L~L~~~~l~~l---~~~~~L~~L~~L~Ls~~~i~~lp~----~i~~L~~L~~L~L~~~~~l~~ip~ 219 (1125)
|++++|.++.+ ..++.+++|++|++++|.+..+|. .+..+++|++|++++|. +.++|.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 66666666653 456666666666666666666654 56666666666666665 555554
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.4e-12 Score=132.74 Aligned_cols=123 Identities=22% Similarity=0.337 Sum_probs=81.1
Q ss_pred EEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCC
Q 001200 112 FFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSN 189 (1125)
Q Consensus 112 ~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~ 189 (1125)
+++++++.+. .+|..++ ++|++|++++|.|..+|..|..+++|++|+|++|.++.+ ..|.++.+|++|+|++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC---TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4444544444 4554332 356666666666666666666667777777777766655 456677777777777777
Q ss_pred CCCCch-hhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccc
Q 001200 190 IEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 190 i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
+..+|. .|+.+.+|++|++++|. +..+|.+.+..+++|++|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 776654 57777777777777776 77777666677777777777777654
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=4.7e-13 Score=130.42 Aligned_cols=129 Identities=27% Similarity=0.248 Sum_probs=91.0
Q ss_pred CCCCcEEEeecCCcc--ccCcccCCCCCCcEEEccCCCCCCcccccCCCCCcEEEccCCCCCC-CchhhccCCCCCEEee
Q 001200 132 MSNLRGLALSNMQFL--SLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQ-LPEEMAQLTQLRLFDL 208 (1125)
Q Consensus 132 l~~Lr~L~Ls~~~i~--~lp~~l~~l~~Lr~L~L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~-lp~~i~~L~~L~~L~L 208 (1125)
.++|+.|++++|.+. .+|..+..+++|++|++++|.+..+..++.+++|++|++++|.+.. +|..++.+++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 456777788777777 6777777778888888888877766777778888888888887776 6766777888888888
Q ss_pred cCCCCCCccCc-cccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEee
Q 001200 209 SGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQ 269 (1125)
Q Consensus 209 ~~~~~l~~ip~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~ 269 (1125)
++|. +..+|. ..++.+++|++|++++|.+...+ ......++.+++|+.|+++
T Consensus 96 s~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~--------~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLN--------DYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGST--------THHHHHHHHCTTCCEETTB
T ss_pred CCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchH--------HHHHHHHHHCCCcccccCC
Confidence 8877 766541 22677888888888877765100 0001356677777777664
No 121
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.39 E-value=1.2e-13 Score=156.87 Aligned_cols=155 Identities=14% Similarity=0.159 Sum_probs=115.9
Q ss_pred EEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC-----cccCCCC-CCcEEEccCCCCCCc--ccccCC-----CC
Q 001200 113 FCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-----SLFHLPL-NLQTLCLDRCALGDI--AIIGNL-----KK 179 (1125)
Q Consensus 113 L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-----~~l~~l~-~Lr~L~L~~~~l~~l--~~~~~L-----~~ 179 (1125)
+.+++|.+...+| .++...++|++|++++|.+...+ .++..++ +|++|+|++|.+... ..+..+ .+
T Consensus 3 ~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 5677777774444 55566667999999999999876 6788888 999999999998754 455554 99
Q ss_pred CcEEEccCCCCCCCc-hh----hccC-CCCCEEeecCCCCCCccCccc----cCC-CCCccEEEeecCcccccccccccc
Q 001200 180 LEILSLVDSNIEQLP-EE----MAQL-TQLRLFDLSGCSKLKVIPPNL----LSG-LSRLEDLYMGNTSVKWEFEGLNVG 248 (1125)
Q Consensus 180 L~~L~Ls~~~i~~lp-~~----i~~L-~~L~~L~L~~~~~l~~ip~~~----l~~-L~~L~~L~l~~~~~~~~~~~~~~~ 248 (1125)
|++|++++|.+...+ .. +..+ .+|++|++++|. +...+... +.. .++|++|++++|.+...+.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~----- 155 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS----- 155 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH-----
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH-----
Confidence 999999999998654 33 4455 899999999998 87777543 334 3699999999998861111
Q ss_pred CCCCChhhhCCCC-CCCEEEeecCCCccc
Q 001200 249 RSNASLQELKLLS-HLTTLEIQICDAMIL 276 (1125)
Q Consensus 249 ~~~~~~~~L~~L~-~L~~L~l~~~~~~~~ 276 (1125)
......+..++ +|++|++++|.+...
T Consensus 156 --~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 156 --DELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp --HHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred --HHHHHHHhcCCccccEeeecCCCCchh
Confidence 12234456665 899999999987543
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=4.9e-13 Score=130.30 Aligned_cols=120 Identities=22% Similarity=0.302 Sum_probs=55.0
Q ss_pred CCCCEEEeecCCCc--ccCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccc-cCcccCCCCCCcEE
Q 001200 86 KNCPTIFLHDCKHW--EVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS-LPSLFHLPLNLQTL 161 (1125)
Q Consensus 86 ~~l~~L~l~~n~~~--~l~~~~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~-lp~~l~~l~~Lr~L 161 (1125)
+++++|++++|.+. .+|..+ .+++|++|++++|.+. .+ ..|.++++|++|++++|.+.. +|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34556666655554 444433 4445555555544443 22 223444444444444444444 34334444444444
Q ss_pred EccCCCCCCc---ccccCCCCCcEEEccCCCCCCCch----hhccCCCCCEEee
Q 001200 162 CLDRCALGDI---AIIGNLKKLEILSLVDSNIEQLPE----EMAQLTQLRLFDL 208 (1125)
Q Consensus 162 ~L~~~~l~~l---~~~~~L~~L~~L~Ls~~~i~~lp~----~i~~L~~L~~L~L 208 (1125)
++++|.++.+ ..++.+++|++|++++|.+..+|. .++.+++|++|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 4444444432 334444444444444444444432 3444444444443
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=1.1e-12 Score=161.75 Aligned_cols=151 Identities=22% Similarity=0.270 Sum_probs=97.3
Q ss_pred CCCCCEEEeecCCCcccCCCC-CCCCccEEEe-----cCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCC
Q 001200 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCM-----SPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNL 158 (1125)
Q Consensus 85 ~~~l~~L~l~~n~~~~l~~~~-~~~~L~~L~l-----~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L 158 (1125)
..++++|++.+|.+...+... ....|+.+.+ ..|.+ .++...|..++.|++|+|++|.+..+|..+..+++|
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 346889999888887765544 3333443333 23332 255667889999999999999999998888899999
Q ss_pred cEEEccCCCCCCc-ccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCc
Q 001200 159 QTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (1125)
Q Consensus 159 r~L~L~~~~l~~l-~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~ 237 (1125)
++|+|++|.|+.+ ..|++|.+|++|+|++|.|..+|..|++|.+|++|+|++|. +..+|.+ |++|++|++|++++|.
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCc
Confidence 9999999998877 77899999999999999999999999999999999999997 8899988 8999999999999988
Q ss_pred cc
Q 001200 238 VK 239 (1125)
Q Consensus 238 ~~ 239 (1125)
+.
T Consensus 328 l~ 329 (727)
T 4b8c_D 328 LE 329 (727)
T ss_dssp CC
T ss_pred cC
Confidence 76
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=3.3e-12 Score=130.11 Aligned_cols=121 Identities=21% Similarity=0.328 Sum_probs=54.5
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCCh-hhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccCC
Q 001200 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPN-HVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRC 166 (1125)
Q Consensus 89 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~-~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~ 166 (1125)
+.+++++|.+.++|..+. .+|++|++++|.+. .++. .+|.++++|++|+|++|.|+.+ |.+|..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 455555555555554432 24555555555444 2322 2344555555555555555444 344444444544444444
Q ss_pred CCCCc--ccccCCCCCcEEEccCCCCCCC-chhhccCCCCCEEeecCC
Q 001200 167 ALGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGC 211 (1125)
Q Consensus 167 ~l~~l--~~~~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~ 211 (1125)
.++.+ ..+.++++|++|++++|.+..+ |..++.+.+|++|++++|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 44433 2244444444444444444432 233344444444444443
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=4e-12 Score=129.48 Aligned_cols=124 Identities=20% Similarity=0.279 Sum_probs=110.3
Q ss_pred cEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCc--ccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEcc
Q 001200 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS--LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLV 186 (1125)
Q Consensus 111 ~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~--~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls 186 (1125)
++++++++.+. .+|..++ .+|++|++++|.+..++. .|+.+++|++|+|++|.++.+ ..|+++.+|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 78999999886 7887654 389999999999999875 389999999999999999977 689999999999999
Q ss_pred CCCCCCCch-hhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccc
Q 001200 187 DSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 187 ~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
+|.+..+|. .++.+++|++|++++|. +..++.+.+..+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999998865 58999999999999998 88776556899999999999999876
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=7.3e-12 Score=127.48 Aligned_cols=121 Identities=21% Similarity=0.295 Sum_probs=109.9
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC-cccCCCCCCcEEEccCCC
Q 001200 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCA 167 (1125)
Q Consensus 89 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~L~~~~ 167 (1125)
+.++++++.+.++|..+. ++|++|++++|.+. .+| ..|.++++|++|++++|.|..++ .+|..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~-~~l~~L~L~~n~i~-~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP-RDVTELYLDGNQFT-LVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCCEEECCSSCCC-SCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC-CCCCEEECCCCcCc-hhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 578999999999998763 78999999999987 788 56799999999999999999885 579999999999999999
Q ss_pred CCCc--ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCC
Q 001200 168 LGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCS 212 (1125)
Q Consensus 168 l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~ 212 (1125)
++.+ ..|..+.+|++|+|++|.+..+|. .+..+.+|++|++++|.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 9977 579999999999999999999987 58899999999999987
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=1.7e-12 Score=130.43 Aligned_cols=134 Identities=16% Similarity=0.187 Sum_probs=71.1
Q ss_pred cCCCCCcEEEeecCCccccCcccCCCC-CCcEEEccCCCCCCcccccCCCCCcEEEccCCCCCCCchhh-ccCCCCCEEe
Q 001200 130 AGMSNLRGLALSNMQFLSLPSLFHLPL-NLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEM-AQLTQLRLFD 207 (1125)
Q Consensus 130 ~~l~~Lr~L~Ls~~~i~~lp~~l~~l~-~Lr~L~L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~~i-~~L~~L~~L~ 207 (1125)
.++.+|++|++++|.+..+|. +..+. +|++|++++|.++.+..++.+.+|++|++++|.+..+|..+ +.+++|++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 445555555555555555543 33332 56666666665555555555666666666666666555433 5566666666
Q ss_pred ecCCCCCCccCc-cccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCC
Q 001200 208 LSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1125)
Q Consensus 208 L~~~~~l~~ip~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 273 (1125)
+++|. +..+|. ..+..+++|++|++++|.+...+ ......++.+++|+.|+++.|..
T Consensus 95 L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~--------~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKK--------HYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGST--------THHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcH--------hHHHHHHHHCCccceeCCCcCCH
Confidence 66665 555554 12555666666666665553100 00011355566666666665543
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=5.8e-13 Score=133.81 Aligned_cols=130 Identities=16% Similarity=0.150 Sum_probs=90.0
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCc-cc-ccCCCCCcEE
Q 001200 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AI-IGNLKKLEIL 183 (1125)
Q Consensus 106 ~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l-~~-~~~L~~L~~L 183 (1125)
++.+|++|++++|.+. .++. +....++|++|++++|.+..+ ..+..+++|++|++++|.++.+ .. ++.+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 5666777777777665 4542 323333777777777777776 4677777777777777777765 22 4777777777
Q ss_pred EccCCCCCCCch--hhccCCCCCEEeecCCCCCCccCcc---ccCCCCCccEEEeecCccc
Q 001200 184 SLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIPPN---LLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 184 ~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~ip~~---~l~~L~~L~~L~l~~~~~~ 239 (1125)
++++|.+..+|. .++.+++|++|++++|. +..+|.. ++..+++|++|++++|...
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777777777776 67777778888887777 6666653 4677778888877776543
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=2.6e-11 Score=121.89 Aligned_cols=105 Identities=26% Similarity=0.469 Sum_probs=55.4
Q ss_pred CCcEEEeecCCccccCc-ccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCCchh-hccCCCCCEEeec
Q 001200 134 NLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLS 209 (1125)
Q Consensus 134 ~Lr~L~Ls~~~i~~lp~-~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~ 209 (1125)
+|++|++++|.+..+|. .+..+++|++|++++|.++.+ ..++.+.+|++|++++|.++.+|.. ++++.+|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444444432 234444555555555544443 2245555555555555555555443 4556666666666
Q ss_pred CCCCCCccCccccCCCCCccEEEeecCccc
Q 001200 210 GCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 210 ~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
+|. +..+|.+.+..+++|++|++++|.+.
T Consensus 109 ~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 109 TNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 665 55666554556666666666666543
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=2.4e-11 Score=122.11 Aligned_cols=123 Identities=24% Similarity=0.347 Sum_probs=89.2
Q ss_pred CCEEEeecCCCcccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCc-ccCCCCCCcEEEccCC
Q 001200 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRC 166 (1125)
Q Consensus 88 l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~l~~l~~Lr~L~L~~~ 166 (1125)
.+.++++++.+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+..+|. .+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~-~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP-SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC-TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC-CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3567777777777775543 67778888777766 5666667777778888888777777754 4577777888888877
Q ss_pred CCCCc--ccccCCCCCcEEEccCCCCCCCchh-hccCCCCCEEeecCCC
Q 001200 167 ALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCS 212 (1125)
Q Consensus 167 ~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~ 212 (1125)
.++.+ ..++.+.+|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 77765 3467777788888887777777664 4677778888877776
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=8.1e-13 Score=163.01 Aligned_cols=131 Identities=21% Similarity=0.244 Sum_probs=113.0
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCc-ccccCCCCCcEEE
Q 001200 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILS 184 (1125)
Q Consensus 106 ~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l-~~~~~L~~L~~L~ 184 (1125)
.++.|++|+|++|.+. .+|..+| ++++|++|+|++|.|..+|..|+.+++|++|+|++|.|+.+ ..|++|.+|++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 7899999999999987 8998876 89999999999999999999999999999999999999987 7899999999999
Q ss_pred ccCCCCCCCchhhccCCCCCEEeecCCCCCCccCccccCCCCC-ccEEEeecCccc
Q 001200 185 LVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSR-LEDLYMGNTSVK 239 (1125)
Q Consensus 185 Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~-L~~L~l~~~~~~ 239 (1125)
|++|.+..+|.+|++|.+|++|+|++|. +...+...+..+.. +..|++++|.+.
T Consensus 300 L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 300 FFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp CCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCccc
Confidence 9999999999999999999999999998 66544443443321 223567776654
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=3.2e-11 Score=143.89 Aligned_cols=123 Identities=21% Similarity=0.230 Sum_probs=92.0
Q ss_pred CCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCc-ccccCCCCCcEEEccCCCCCCCchhhccCCCCCEEeecCCC
Q 001200 134 NLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCS 212 (1125)
Q Consensus 134 ~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l-~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~ 212 (1125)
.|++|++++|.++.+|. |+.+++|++|+|++|.++.+ ..++++++|++|+|++|.++.+| .+++|++|++|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 47888888888888876 88888888888888888776 77888888888888888888887 78888888888888887
Q ss_pred CCCcc--CccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEe
Q 001200 213 KLKVI--PPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEI 268 (1125)
Q Consensus 213 ~l~~i--p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l 268 (1125)
+..+ |.. ++.+++|++|++++|.+...+ .....-+..+++|+.|++
T Consensus 520 -l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~--------~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 -LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEE--------GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CCSSSTTGG-GGGCTTCCEEECTTSGGGGSS--------SCTTHHHHHCTTCSEEEC
T ss_pred -CCCCCCcHH-HhcCCCCCEEEecCCcCCCCc--------cHHHHHHHHCcccCccCC
Confidence 7777 555 788888888888888775211 112223344777777753
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=8.6e-11 Score=131.16 Aligned_cols=188 Identities=18% Similarity=0.142 Sum_probs=121.5
Q ss_pred CCCCCEEEeecCCCc--------------------ccCCCC--C--------CCCccEEEecCCCCCCCCChhhhcCCCC
Q 001200 85 LKNCPTIFLHDCKHW--------------------EVPEGL--E--------YPQLEFFCMSPRDHSIKIPNHVFAGMSN 134 (1125)
Q Consensus 85 ~~~l~~L~l~~n~~~--------------------~l~~~~--~--------~~~L~~L~l~~n~~~~~l~~~~f~~l~~ 134 (1125)
+.+++.|+|++|++. .++... + |++|+.|.+.+ .+. .++..+|.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcc
Confidence 567899999988877 344443 5 77777777776 444 677777777777
Q ss_pred CcEEEeecCCcccc-CcccCCCCCCcEEEccCCCC----CCc--ccc---------------------------------
Q 001200 135 LRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCAL----GDI--AII--------------------------------- 174 (1125)
Q Consensus 135 Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~~l----~~l--~~~--------------------------------- 174 (1125)
|+.|++++|.+..+ +.+|..+.++.++.+..... ..+ ..|
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 77777777777666 34566666666665544110 000 000
Q ss_pred -----------------cCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCccCccccCCCCCcc-EEEeec
Q 001200 175 -----------------GNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLE-DLYMGN 235 (1125)
Q Consensus 175 -----------------~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~-~L~l~~ 235 (1125)
..+.+|+.|+|++|+++.+|. .|.++.+|+.|++..+ +..|+.++|.++.+|+ .+++.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc
Confidence 025677777777777777765 4777777777777765 7777777777777777 777766
Q ss_pred CccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCcc--ccccccEE
Q 001200 236 TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERY 288 (1125)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l 288 (1125)
.+. ......+.++++|+.|++..+.+..++..+ ...+|+.+
T Consensus 284 -~l~-----------~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 284 -SVT-----------AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp -TCC-----------EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred -cce-----------EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 333 122356777777777777777777666655 34445443
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.15 E-value=2.4e-13 Score=139.54 Aligned_cols=109 Identities=23% Similarity=0.293 Sum_probs=74.6
Q ss_pred hhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCc-ccccCCCCCcEEEccCCCCCCCchhhccCCCCCEE
Q 001200 128 VFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLF 206 (1125)
Q Consensus 128 ~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l-~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 206 (1125)
.|..+++|++|++++|.+..+| .+..+++|++|++++|.+..+ ..+..+++|++|++++|.+..+| .++.+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 4566777777777777777766 666777777777777776655 44555677777777777777766 56777777777
Q ss_pred eecCCCCCCccCc-cccCCCCCccEEEeecCccc
Q 001200 207 DLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 207 ~L~~~~~l~~ip~-~~l~~L~~L~~L~l~~~~~~ 239 (1125)
++++|. +..++. ..+..+++|++|++++|.+.
T Consensus 121 ~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 121 YMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred ECCCCc-CCchhHHHHHhcCCCCCEEEecCCccc
Confidence 777776 666553 23667777777777777654
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=1.9e-10 Score=114.72 Aligned_cols=101 Identities=24% Similarity=0.391 Sum_probs=72.4
Q ss_pred cEEEeecCCccccCcccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCCchh-hccCCCCCEEeecCCC
Q 001200 136 RGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCS 212 (1125)
Q Consensus 136 r~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~ 212 (1125)
+.++++++.+..+|..+. .+|++|+|++|.++.+ ..|+++++|++|+|++|.++.+|.. ++++.+|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777777777776553 6777777777777655 4577777777777777777777654 4677777777777776
Q ss_pred CCCccCccccCCCCCccEEEeecCccc
Q 001200 213 KLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 213 ~l~~ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
+..+|.+.+..+++|++|++++|.+.
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -cceeCHHHhccccCCCEEEeCCCCcc
Confidence 77777666677777777777777654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=4.5e-13 Score=137.50 Aligned_cols=142 Identities=22% Similarity=0.273 Sum_probs=118.6
Q ss_pred CCCEEEeecC--CCcccCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccCcccCCCCCCcEEEc
Q 001200 87 NCPTIFLHDC--KHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (1125)
Q Consensus 87 ~l~~L~l~~n--~~~~l~~~~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L 163 (1125)
.++...+.++ .++.+|..+ .+++|++|++++|.+. .+| .|.++++|++|++++|.+..+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 5666666654 455666555 7899999999999887 577 578999999999999999999988888899999999
Q ss_pred cCCCCCCcccccCCCCCcEEEccCCCCCCCch--hhccCCCCCEEeecCCCCCCccCc----------cccCCCCCccEE
Q 001200 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIPP----------NLLSGLSRLEDL 231 (1125)
Q Consensus 164 ~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~ip~----------~~l~~L~~L~~L 231 (1125)
++|.++.++.++.+++|++|++++|.+..+|. .+..+++|++|++++|. +...+. ..+..+++|++|
T Consensus 101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEE
Confidence 99999988889999999999999999998875 78999999999999997 543322 235677788877
Q ss_pred E
Q 001200 232 Y 232 (1125)
Q Consensus 232 ~ 232 (1125)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 6
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=2.4e-10 Score=113.63 Aligned_cols=102 Identities=25% Similarity=0.362 Sum_probs=74.6
Q ss_pred CcEEEeecCCccccCcccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCCchh-hccCCCCCEEeecCC
Q 001200 135 LRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGC 211 (1125)
Q Consensus 135 Lr~L~Ls~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~ 211 (1125)
.+++++++|.+..+|..+ ..+|++|+|++|.|+.+ ..|+++.+|++|+|++|.++.+|.. |.++.+|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 466777777777777655 36777777777777765 4577777777777777777777654 577788888888877
Q ss_pred CCCCccCccccCCCCCccEEEeecCccc
Q 001200 212 SKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 212 ~~l~~ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
. +..+|.+.+..+++|++|++++|.+.
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred c-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7 77777766777777777777777654
No 138
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=99.11 E-value=1.6e-10 Score=94.75 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=62.9
Q ss_pred ceEEEEEEEecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEecCHHHHHHHHHHhcCceEEEec
Q 001200 1029 KQKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVSI 1096 (1125)
Q Consensus 1029 ~~~~~~kv~~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~~ 1096 (1125)
|+++.++|+|+|.+|+.+|.+++.+++|| ++.+|...++++|.|++++.++.+++++.|+.+.++++
T Consensus 1 m~~~~~~vgm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~~ 67 (68)
T 3iwl_A 1 MPKHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLGL 67 (68)
T ss_dssp -CEEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHTTCSCEEEEEC
T ss_pred CceEEEEECcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEecCCHHHHHHHHHHcCCceEecCC
Confidence 46788999999999999999999999999 99999999999999999999999999999999998864
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=3.6e-10 Score=112.69 Aligned_cols=80 Identities=28% Similarity=0.420 Sum_probs=41.1
Q ss_pred CCCcEEEeecCCcccc-CcccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCCchh-hccCCCCCEEee
Q 001200 133 SNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDL 208 (1125)
Q Consensus 133 ~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L 208 (1125)
++|++|+|++|.|..+ |..|..+++|++|+|++|.++.+ ..|.++.+|++|+|++|.+..+|.. +..+.+|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 3444455555544444 33444555555555555554444 2244555555555555555555543 555556666666
Q ss_pred cCCC
Q 001200 209 SGCS 212 (1125)
Q Consensus 209 ~~~~ 212 (1125)
++|.
T Consensus 113 ~~N~ 116 (174)
T 2r9u_A 113 YNNP 116 (174)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 5555
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=6.3e-10 Score=110.50 Aligned_cols=80 Identities=26% Similarity=0.348 Sum_probs=40.4
Q ss_pred CCCcEEEeecCCcccc-CcccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEee
Q 001200 133 SNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDL 208 (1125)
Q Consensus 133 ~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L 208 (1125)
++|++|+|++|.|+.+ |..|..+++|++|+|++|.++.+ ..|..+.+|++|+|++|.+..+|. .+.++.+|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 3444445555544444 33444555555555555554444 234455555555555555555544 2555555555555
Q ss_pred cCCC
Q 001200 209 SGCS 212 (1125)
Q Consensus 209 ~~~~ 212 (1125)
++|.
T Consensus 110 ~~N~ 113 (170)
T 3g39_A 110 LNNP 113 (170)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 5554
No 141
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=99.01 E-value=1.3e-09 Score=90.92 Aligned_cols=68 Identities=9% Similarity=0.028 Sum_probs=64.0
Q ss_pred cceEEEEEEEecchhHHHHHHhhhcCCC-CeeEEEeeCCCCeEEEEEecCHHHHHHHHHHhcCceEEEe
Q 001200 1028 TKQKAVLKLEIHGEKARQKAFSIVSKFT-GVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVS 1095 (1125)
Q Consensus 1028 ~~~~~~~kv~~~c~~c~~~~~~~~~~~~-gv~~~~~~~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~ 1095 (1125)
|++++.++|+|+|.+|+.+|.+++.+++ ||.++.+|...++++|.+.+++.++.+.+++.|+.++.+.
T Consensus 3 ~m~~~~~~v~m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (73)
T 1cc8_A 3 EIKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVRSGK 71 (73)
T ss_dssp CCEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCEEEEE
T ss_pred CceEEEEEEeeECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCCceeee
Confidence 4688899999999999999999999999 9999999999999999999999999999999999888764
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=1.2e-09 Score=121.77 Aligned_cols=192 Identities=15% Similarity=0.189 Sum_probs=140.3
Q ss_pred CCCCCCEEEeecCCC-cccCCCCC-CCCccEEEecCCCCCC-------------------CCChhhhcC--------CCC
Q 001200 84 MLKNCPTIFLHDCKH-WEVPEGLE-YPQLEFFCMSPRDHSI-------------------KIPNHVFAG--------MSN 134 (1125)
Q Consensus 84 ~~~~l~~L~l~~n~~-~~l~~~~~-~~~L~~L~l~~n~~~~-------------------~l~~~~f~~--------l~~ 134 (1125)
...++++|.++++-- .++..... +++|++|+|++|.+.. .+|..+|.+ +++
T Consensus 23 ~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp HHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred hhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence 355789999987421 11111112 7899999999987650 467788999 999
Q ss_pred CcEEEeecCCccccC-cccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccCCCC----C----------------
Q 001200 135 LRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNI----E---------------- 191 (1125)
Q Consensus 135 Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i----~---------------- 191 (1125)
|+.|+|.+ .+..++ .+|.++++|+.|++++|.+..+ ..|..+.++.++.+..+.. .
T Consensus 103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~ 181 (329)
T 3sb4_A 103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETT 181 (329)
T ss_dssp CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEE
T ss_pred CcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccccee
Confidence 99999999 888885 5799999999999999998766 7788888888887765210 0
Q ss_pred -------CCchhh----------------------------ccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecC
Q 001200 192 -------QLPEEM----------------------------AQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (1125)
Q Consensus 192 -------~lp~~i----------------------------~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~ 236 (1125)
.+|..+ ..+.+|+.|++++|. +..||.++|.++.+|+++++.++
T Consensus 182 i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 182 IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp EEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT
T ss_pred EEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc
Confidence 011100 137899999999888 99999999999999999999887
Q ss_pred ccccccccccccCCCCChhhhCCCCCCC-EEEeecCCCcccCCcc--ccccccEEEE
Q 001200 237 SVKWEFEGLNVGRSNASLQELKLLSHLT-TLEIQICDAMILPKGL--FSKKLERYKI 290 (1125)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~L~~L~~L~-~L~l~~~~~~~~~~~~--~~~~L~~l~l 290 (1125)
+. ......+.++.+|+ .+++.. .+..++..+ .+.+|+.+.+
T Consensus 261 -i~-----------~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 261 -LK-----------TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp -CC-----------EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred -cc-----------eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 43 22345788899999 999987 666666655 4455665554
No 143
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=7.2e-09 Score=91.52 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=66.3
Q ss_pred ceEEEEEEEecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEecCHHHHHHHHHHhcCceEEEecCCCC
Q 001200 1029 KQKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVSIGPAN 1100 (1125)
Q Consensus 1029 ~~~~~~kv~~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~~~~~~ 1100 (1125)
+.+++++|+|+|.+|+.+|.+++.+++||.+|.+|...++++|.+++++.++.+.+++.|+.+.++..+++.
T Consensus 18 ~~~~~l~V~m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~ 89 (98)
T 2crl_A 18 LCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQ 89 (98)
T ss_dssp CEEEEEEECCCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHTTTSCEEEEESCCCC
T ss_pred ceEEEEEEeeECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCceEEccCCCCc
Confidence 567889999999999999999999999999999999999999999999999999999999999988765543
No 144
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=98.79 E-value=1.5e-08 Score=83.18 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=60.3
Q ss_pred eEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEE--EecCHHHHHHHHHHhcCceEE
Q 001200 1030 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVI--GDIDAVPVVRKLRKQLCATEL 1093 (1125)
Q Consensus 1030 ~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~--g~~d~~~~~~~l~k~~~~~~~ 1093 (1125)
+++.++|+ |+|.+|+.+|.+++.+++||.++.+|...++++|. +.+++.++.+.+++.|+.+++
T Consensus 2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~ 68 (69)
T 4a4j_A 2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV 68 (69)
T ss_dssp EEEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCCceEe
Confidence 67899998 99999999999999999999999999999999999 669999999999999998775
No 145
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=98.76 E-value=3.3e-08 Score=82.48 Aligned_cols=67 Identities=9% Similarity=0.128 Sum_probs=62.4
Q ss_pred ceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCceEEEe
Q 001200 1029 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELVS 1095 (1125)
Q Consensus 1029 ~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~~ 1095 (1125)
|+++.++|. |+|.+|+.+|.+++.+++||.++.+|...++++|..+ +++.++.+.+++.|+.+++++
T Consensus 1 M~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (74)
T 3dxs_X 1 MRKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEILA 71 (74)
T ss_dssp CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEEEEE
T ss_pred CcEEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceEEcc
Confidence 578899998 9999999999999999999999999999999999865 689999999999999998875
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.74 E-value=1.9e-08 Score=113.10 Aligned_cols=100 Identities=22% Similarity=0.282 Sum_probs=66.5
Q ss_pred EEEeecC-CccccCcccCCCCCCcEEEccC-CCCCCc--ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCC
Q 001200 137 GLALSNM-QFLSLPSLFHLPLNLQTLCLDR-CALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGC 211 (1125)
Q Consensus 137 ~L~Ls~~-~i~~lp~~l~~l~~Lr~L~L~~-~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~ 211 (1125)
.++.+++ .+..+|. |..+.+|++|+|++ |.++.+ ..|++|.+|++|+|++|.|..+|. .|++|.+|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3466665 6666666 66667777777764 666655 456677777777777777776643 5677777777777777
Q ss_pred CCCCccCccccCCCCCccEEEeecCccc
Q 001200 212 SKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 212 ~~l~~ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
. +..+|.+.+..+. |++|++.+|.+.
T Consensus 91 ~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 A-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp C-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred c-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6 7777766454444 777777776654
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.73 E-value=2.1e-07 Score=105.78 Aligned_cols=252 Identities=12% Similarity=0.161 Sum_probs=144.4
Q ss_pred CCCCEEEeecCCCcccCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC-cccCCCCCCcEEE
Q 001200 86 KNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLC 162 (1125)
Q Consensus 86 ~~l~~L~l~~n~~~~l~~~~--~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~ 162 (1125)
..+..+.+.. .+..++... ++ +|+.+.+..+ +. .+...+|.+. +|+.+.+.+ .+..++ .+|.++.+|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 4555555542 455555544 43 6777777655 32 5666777664 577777765 566663 5677777777777
Q ss_pred ccCCCCCCc--ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccc
Q 001200 163 LDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 163 L~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
+.+|.+..+ ..|. ..+|+.+.+..+ +..++. .|.++.+|+.+++..+ +..++..+|.+ .+|+.+.+..+ +.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~ 260 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VT 260 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CC
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-cc
Confidence 777777665 3344 467777777643 666653 5677777777777653 66777766666 67777777433 22
Q ss_pred cccccccccCCCCChhhhCCCCCCCEEEeecCCCc-----ccCCcc--ccccccEEEEEeCCcccccCCCCCceEEEEec
Q 001200 240 WEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM-----ILPKGL--FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKL 312 (1125)
Q Consensus 240 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~-----~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~ 312 (1125)
......+.++++|+.+.+..+... .++..+ .+.+|+.+.+..+ +
T Consensus 261 -----------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i----------------- 311 (401)
T 4fdw_A 261 -----------NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I----------------- 311 (401)
T ss_dssp -----------EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C-----------------
T ss_pred -----------EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e-----------------
Confidence 122345667777777777665543 344443 3345555443210 0
Q ss_pred ccCChhH-HHhhhccccEEEccccCCcccccccccccccccCcEEEeecCCCeeEeeeCCccccccccc-ccceeeccc
Q 001200 313 YTSNVDE-VIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFL-LLESLVLHN 389 (1125)
Q Consensus 313 ~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~-~L~~L~l~~ 389 (1125)
..++. .+..+++|+.+.+... ++. +....+.++ +|+.+.+.++.- ..+.. ..+..++ .+..|++-.
T Consensus 312 --~~I~~~aF~~c~~L~~l~lp~~--l~~-I~~~aF~~~-~L~~l~l~~n~~-~~l~~----~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 312 --RILGQGLLGGNRKVTQLTIPAN--VTQ-INFSAFNNT-GIKEVKVEGTTP-PQVFE----KVWYGFPDDITVIRVPA 379 (401)
T ss_dssp --CEECTTTTTTCCSCCEEEECTT--CCE-ECTTSSSSS-CCCEEEECCSSC-CBCCC----SSCCCSCTTCCEEEECG
T ss_pred --EEEhhhhhcCCCCccEEEECcc--ccE-EcHHhCCCC-CCCEEEEcCCCC-ccccc----ccccCCCCCccEEEeCH
Confidence 12222 3455677787777442 332 223334667 899999988752 22211 1223332 566676643
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.71 E-value=9.9e-10 Score=123.82 Aligned_cols=128 Identities=16% Similarity=0.116 Sum_probs=59.5
Q ss_pred CCCCCEEEeecCCCcccCC-----CC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-----Cccc
Q 001200 85 LKNCPTIFLHDCKHWEVPE-----GL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-----PSLF 152 (1125)
Q Consensus 85 ~~~l~~L~l~~n~~~~l~~-----~~--~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-----p~~l 152 (1125)
.+.+++|++++|.+..... .+ ..++|++|+|++|.+...-...++..+++|+.|+|++|.+... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3456666666666543211 11 2245666666666543211222233344555666666555421 1111
Q ss_pred -CCCCCCcEEEccCCCCCC-----c-ccccCCCCCcEEEccCCCCCC-----CchhhccCCCCCEEeecCCC
Q 001200 153 -HLPLNLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIEQ-----LPEEMAQLTQLRLFDLSGCS 212 (1125)
Q Consensus 153 -~~l~~Lr~L~L~~~~l~~-----l-~~~~~L~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~~~ 212 (1125)
...++|++|+|++|.++. + ..+..+++|++|||++|.+.. ++..+....+|++|+|++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 234455555555555542 1 223445555555555555442 23334444455555555554
No 149
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=98.70 E-value=2.2e-08 Score=83.16 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=61.9
Q ss_pred cceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEecCHHHHHHHHHHhcCceEEEe
Q 001200 1028 TKQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVS 1095 (1125)
Q Consensus 1028 ~~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~ 1095 (1125)
+|+++.++|. |+|.+|+.+|.+++.+ +||..+.+|...++++|.++ ++.++.+.+++.|+.+.+.+
T Consensus 3 ~m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~-~~~~i~~~i~~~Gy~~~~~~ 69 (73)
T 3fry_A 3 SVEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKE-DVDKYIKAVEAAGYQAKLRS 69 (73)
T ss_dssp CCEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGG-GHHHHHHHHHHTTCEEEECC
T ss_pred ccEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEEC-CHHHHHHHHHHcCCceEecC
Confidence 5788999998 9999999999999999 99999999999999999999 99999999999999887664
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.69 E-value=8.1e-10 Score=124.54 Aligned_cols=160 Identities=17% Similarity=0.136 Sum_probs=115.7
Q ss_pred CCCccEEEecCCCCCCCCChhhh----c-CCCCCcEEEeecCCccc--cCcccCCCCCCcEEEccCCCCCCc--ccc---
Q 001200 107 YPQLEFFCMSPRDHSIKIPNHVF----A-GMSNLRGLALSNMQFLS--LPSLFHLPLNLQTLCLDRCALGDI--AII--- 174 (1125)
Q Consensus 107 ~~~L~~L~l~~n~~~~~l~~~~f----~-~l~~Lr~L~Ls~~~i~~--lp~~l~~l~~Lr~L~L~~~~l~~l--~~~--- 174 (1125)
.+.|+.|++++|.+.. .....| . ..++|++|+|++|.+.. +..-...+.+|++|+|++|.+... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTP-VKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCH-HHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCH-HHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4679999999998762 221222 2 33799999999998863 222223456899999999998743 232
Q ss_pred --cCCCCCcEEEccCCCCCC-----CchhhccCCCCCEEeecCCCCCCccC----ccccCCCCCccEEEeecCccccccc
Q 001200 175 --GNLKKLEILSLVDSNIEQ-----LPEEMAQLTQLRLFDLSGCSKLKVIP----PNLLSGLSRLEDLYMGNTSVKWEFE 243 (1125)
Q Consensus 175 --~~L~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~ip----~~~l~~L~~L~~L~l~~~~~~~~~~ 243 (1125)
....+|++|+|++|.+.. ++..+..+++|++|+|++|. +.... ...+...++|++|++++|.+...+.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 357889999999998864 55567889999999999998 76532 1226677899999999998862211
Q ss_pred cccccCCCCChhhhCCCCCCCEEEeecCCCcc
Q 001200 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMI 275 (1125)
Q Consensus 244 ~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~ 275 (1125)
......+...++|++|++++|.+..
T Consensus 229 -------~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 229 -------LALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp -------HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred -------HHHHHHHHhCCCCCEEeccCCCCCH
Confidence 1233456677889999999998754
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.69 E-value=2e-07 Score=105.95 Aligned_cols=184 Identities=14% Similarity=0.170 Sum_probs=95.4
Q ss_pred CCCEEEeecCCCcccCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEc
Q 001200 87 NCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCL 163 (1125)
Q Consensus 87 ~l~~L~l~~n~~~~l~~~~--~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L 163 (1125)
+++.+.+.. .+..+.... +|++|+.+++.+|.+. .++..+|. ..+|+.+.+..+ +..+ ..+|.++.+|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 456666653 555555444 5666777777666554 56666665 356666666533 5555 245666666666666
Q ss_pred cCCCCCCc--ccccCCCCCcEEEccCCCCCCCc-hhhccCCCCCEEeecCCCCCC-----ccCccccCCCCCccEEEeec
Q 001200 164 DRCALGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLK-----VIPPNLLSGLSRLEDLYMGN 235 (1125)
Q Consensus 164 ~~~~l~~l--~~~~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~-----~ip~~~l~~L~~L~~L~l~~ 235 (1125)
..+ +..+ ..|.+ .+|+.+++. +++..++ ..|.++.+|+.+++.++. +. .++..+|.++.+|+.+.+.+
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~-~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGST-FNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSC-CCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred CCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcc-ccCCcccEECHHHhhCCccCCeEEeCC
Confidence 553 3333 33444 456666553 2344453 245556666666655543 22 35555555666666665553
Q ss_pred CccccccccccccCCCCChhhhCCCCCCCEEEeecCCCcccCCcc--ccccccEEEEEe
Q 001200 236 TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFI 292 (1125)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~ 292 (1125)
+ +. ......+.++++|+.+.+..+ +..+...+ .. +|+.+.+..
T Consensus 310 ~-i~-----------~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 310 S-IR-----------ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp T-CC-----------EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECC
T ss_pred c-eE-----------EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcC
Confidence 2 22 112234555555555555332 34444333 22 555555543
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.64 E-value=6.1e-08 Score=108.95 Aligned_cols=97 Identities=20% Similarity=0.175 Sum_probs=64.8
Q ss_pred EEecCC-CCCCCCChhhhcCCCCCcEEEeec-CCccccC-cccCCCCCCcEEEccCCCCCCc--ccccCCCCCcEEEccC
Q 001200 113 FCMSPR-DHSIKIPNHVFAGMSNLRGLALSN-MQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVD 187 (1125)
Q Consensus 113 L~l~~n-~~~~~l~~~~f~~l~~Lr~L~Ls~-~~i~~lp-~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~L~Ls~ 187 (1125)
++++++ .+. .+|. |..+++|++|+|++ |.|..+| ..|+.+.+|++|+|++|.|+.+ ..|++|.+|++|+|++
T Consensus 13 v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 355554 444 5665 56667777777775 7777665 4577777777777777777655 4567777777777777
Q ss_pred CCCCCCchhhccCCCCCEEeecCCC
Q 001200 188 SNIEQLPEEMAQLTQLRLFDLSGCS 212 (1125)
Q Consensus 188 ~~i~~lp~~i~~L~~L~~L~L~~~~ 212 (1125)
|.+..+|..+.....|++|++.+|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CccceeCHHHcccCCceEEEeeCCC
Confidence 7777777654333347888887776
No 153
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=98.47 E-value=8.3e-07 Score=72.97 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=58.2
Q ss_pred cceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe--cCHHHHHHHHHHhcCceEE
Q 001200 1028 TKQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD--IDAVPVVRKLRKQLCATEL 1093 (1125)
Q Consensus 1028 ~~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~--~d~~~~~~~l~k~~~~~~~ 1093 (1125)
|++++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+..
T Consensus 1 m~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~ 69 (71)
T 2xmw_A 1 MAQTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV 69 (71)
T ss_dssp -CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCCCcee
Confidence 5678899998 9999999999999999999999999999999999765 6788899999998887653
No 154
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=98.43 E-value=2e-07 Score=75.59 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=56.2
Q ss_pred EEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEecCHHHHHHHHHHhcCceEE
Q 001200 1033 VLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATEL 1093 (1125)
Q Consensus 1033 ~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~ 1093 (1125)
.++|. |+|.+|+.++.+++.+++||.++.+|...++++|.+.+++..+.+.+++.|+.+..
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~ 64 (66)
T 2roe_A 3 KLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAEV 64 (66)
T ss_dssp CEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECSCCCHHHHHHHHHTTTCEEEE
T ss_pred EEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECCCCCHHHHHHHHHHcCCCcEe
Confidence 47887 99999999999999999999999999999999997779999999999999987654
No 155
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=98.43 E-value=6.1e-07 Score=73.83 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=57.7
Q ss_pred ccceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCce
Q 001200 1027 RTKQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCAT 1091 (1125)
Q Consensus 1027 ~~~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~ 1091 (1125)
..|+++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+
T Consensus 2 ~~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 70 (71)
T 2l3m_A 2 NAMEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYDV 70 (71)
T ss_dssp CSEEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTTCEE
T ss_pred CCcEEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence 34677889998 9999999999999999999999999999999999854 67888999999988754
No 156
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=98.41 E-value=2e-07 Score=79.73 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=58.0
Q ss_pred ccceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEecCHHHHHHHHHHhcCce
Q 001200 1027 RTKQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCAT 1091 (1125)
Q Consensus 1027 ~~~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d~~~~~~~l~k~~~~~ 1091 (1125)
..++++.++|. |+|..|+.+|.+++.+++||.++.+|...++++|.+++++.++.+.+++.|+.+
T Consensus 19 ~~~~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~~~~~~i~~~i~~~Gy~~ 84 (85)
T 2k2p_A 19 FQGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSDAAHIAEIITAAGYTP 84 (85)
T ss_dssp ---CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESCCCHHHHHHHHHHTTCCC
T ss_pred ccccEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence 34567789997 999999999999999999999999999999999999999999999999988754
No 157
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=98.37 E-value=2.8e-07 Score=74.01 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=55.6
Q ss_pred EEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEecCHHHHHHHHHHhcCce
Q 001200 1032 AVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCAT 1091 (1125)
Q Consensus 1032 ~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d~~~~~~~l~k~~~~~ 1091 (1125)
+.++|. |+|.+|+.++.+++.+++||.++.+|...++++|.+.+++..+.+.+++.|+.+
T Consensus 3 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~G~~~ 63 (64)
T 2xmm_A 3 IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYEV 63 (64)
T ss_dssp EEEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEECSSCHHHHHHHHHHTTCCC
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence 568886 999999999999999999999999999999999999899999999999988754
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.36 E-value=6.1e-06 Score=94.19 Aligned_cols=131 Identities=15% Similarity=0.164 Sum_probs=78.6
Q ss_pred CcccCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCccccC-cccCCCCCCcEEEccCCCCCCc--c
Q 001200 98 HWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--A 172 (1125)
Q Consensus 98 ~~~l~~~~--~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~Lr~L~L~~~~l~~l--~ 172 (1125)
+.++...+ +|.+|+.+.+..+ +. .+...+|.++.+|+.+++..+ +..++ .+|..+.+|+.+.+..+ +..+ .
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 34555544 6777777777643 33 567777777777887777644 55553 46777777777665543 3322 4
Q ss_pred cccCCCCCcEEEccCCCCCCCc-hhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecC
Q 001200 173 IIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (1125)
Q Consensus 173 ~~~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~ 236 (1125)
.|.+...+....... +..+. ..|.++.+|+.+.+..+ +..++.+++.++.+|+.+.+..+
T Consensus 135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred eeecccccccccCcc--ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC
Confidence 444444333332222 22232 35677777888877653 56677777777777777776554
No 159
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=98.36 E-value=8.7e-07 Score=90.34 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=63.5
Q ss_pred eEEEEEEEecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEecCHHHHHHHHHHhcCceEEEecCC
Q 001200 1030 QKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVSIGP 1098 (1125)
Q Consensus 1030 ~~~~~kv~~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~~~~ 1098 (1125)
.+++++|+|+|..|+++|.+++.+++||.++++|...++++|.+.+++.++.+.+++.++.+.++..++
T Consensus 6 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aI~~~Gy~a~~~~~~~ 74 (222)
T 1qup_A 6 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGK 74 (222)
T ss_dssp EEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCCEEECCSC
T ss_pred eEEEEEEccccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEeccCCHHHHHHHHHHcCCccccccCCC
Confidence 567788899999999999999999999999999999999999999999999999999999988875443
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.33 E-value=9.7e-06 Score=92.49 Aligned_cols=147 Identities=20% Similarity=0.172 Sum_probs=107.9
Q ss_pred CCCCCCEEEeecCCCcccCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcE
Q 001200 84 MLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQT 160 (1125)
Q Consensus 84 ~~~~l~~L~l~~n~~~~l~~~~--~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~ 160 (1125)
-..+++.+.+. +.++.+.... +|++|+.+.+..+ . ..+...+|.++..|+.+.+..+ +..+ ..+|..+..+..
T Consensus 69 ~c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 69 GCRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-V-KMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TCTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEE
T ss_pred CCCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-c-eEccchhhcccccchhhcccCc-eeeecceeeeccccccc
Confidence 35678899886 4588887765 8999999999765 3 3688889999999999887654 4444 456777665554
Q ss_pred EEccCCCCCCcccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCc
Q 001200 161 LCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (1125)
Q Consensus 161 L~L~~~~l~~l~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~ 237 (1125)
........-.-..|.++.+|+.+.+..+ +..++. .|..+.+|+.+.+..+ +..++..++.+...|+.+.+..+.
T Consensus 145 ~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 145 TIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred ccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCc
Confidence 4433322112267889999999999765 455654 6788999999998765 788888888899999888776543
No 161
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=98.29 E-value=2.4e-06 Score=70.43 Aligned_cols=64 Identities=19% Similarity=0.170 Sum_probs=57.6
Q ss_pred eEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCceEE
Q 001200 1030 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATEL 1093 (1125)
Q Consensus 1030 ~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~ 1093 (1125)
+++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+.+
T Consensus 3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 70 (72)
T 1aw0_A 3 QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATL 70 (72)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEE
T ss_pred eEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCCCCcEe
Confidence 56789997 9999999999999999999999999999999999876 5778899999998987654
No 162
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=98.24 E-value=1.9e-06 Score=73.69 Aligned_cols=66 Identities=11% Similarity=0.132 Sum_probs=58.6
Q ss_pred ceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCceEEE
Q 001200 1029 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1094 (1125)
Q Consensus 1029 ~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1094 (1125)
..++.++|. |+|..|+.+|.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+.+.
T Consensus 8 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 77 (84)
T 1q8l_A 8 EVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVK 77 (84)
T ss_dssp CEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECS
T ss_pred ceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEec
Confidence 356789997 9999999999999999999999999999999999875 57888999999988876543
No 163
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=98.23 E-value=2.7e-06 Score=71.29 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=59.5
Q ss_pred ceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCceEEE
Q 001200 1029 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1094 (1125)
Q Consensus 1029 ~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1094 (1125)
|+++.++|. |+|..|+.+|.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+..+
T Consensus 2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 71 (77)
T 1y3j_A 2 SSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVI 71 (77)
T ss_dssp CEEEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTSCEEEE
T ss_pred CEEEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEEC
Confidence 677889997 9999999999999999999999999999999999875 57788999999999887664
No 164
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=98.22 E-value=5.9e-06 Score=68.67 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=58.5
Q ss_pred eEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCceEEEe
Q 001200 1030 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELVS 1095 (1125)
Q Consensus 1030 ~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~~ 1095 (1125)
.++.++|. |+|..|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+.+..
T Consensus 2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (75)
T 3cjk_B 2 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN 71 (75)
T ss_dssp EEEEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEeec
Confidence 35678887 9999999999999999999999999999999999875 577889999999998877654
No 165
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=98.22 E-value=3.3e-06 Score=69.50 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=57.3
Q ss_pred eEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCceEE
Q 001200 1030 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATEL 1093 (1125)
Q Consensus 1030 ~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~ 1093 (1125)
+++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+.+
T Consensus 3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 70 (72)
T 1osd_A 3 QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSV 70 (72)
T ss_dssp EEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCEE
T ss_pred eEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence 56788887 9999999999999999999999999999999999876 5778899999998887654
No 166
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=98.21 E-value=2.5e-06 Score=88.25 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=64.0
Q ss_pred eEEEEEEEecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEecCHHHHHHHHHHhcCceEEEecCCC
Q 001200 1030 QKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVSIGPA 1099 (1125)
Q Consensus 1030 ~~~~~kv~~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~~~~~ 1099 (1125)
.+++++|+|+|..|+++|.+++.+++||.++++|...++++|.+.+++.++.+++++.++.+.++..+++
T Consensus 7 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~ 76 (249)
T 1jk9_B 7 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGKP 76 (249)
T ss_dssp EEEEEECCCCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHTTTCCCEEEEESST
T ss_pred eeEEEEEeeccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEecCCCHHHHHHHHHHhCCCcccccCCcc
Confidence 4567888899999999999999999999999999999999999999999999999999999888765443
No 167
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=98.20 E-value=6.2e-06 Score=68.13 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=55.9
Q ss_pred ceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEecC-HHHHHHHHHHhcCceE
Q 001200 1029 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDID-AVPVVRKLRKQLCATE 1092 (1125)
Q Consensus 1029 ~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d-~~~~~~~l~k~~~~~~ 1092 (1125)
|.++.++|. |+|.+|+.+|.+++.+++||.++.+|...++++|..+.. ...+.+.+++.|+.+.
T Consensus 2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy~~~ 67 (73)
T 1mwy_A 2 GTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLR 67 (73)
T ss_dssp CEEEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCEEE
T ss_pred CeEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCCccc
Confidence 456789998 999999999999999999999999999999999987642 5678888999888654
No 168
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=98.20 E-value=3.9e-06 Score=72.70 Aligned_cols=66 Identities=17% Similarity=0.250 Sum_probs=57.5
Q ss_pred eEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHh---cCceEEEe
Q 001200 1030 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQ---LCATELVS 1095 (1125)
Q Consensus 1030 ~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~---~~~~~~~~ 1095 (1125)
.++.++|. |+|..|+.+|.+++.+++||.++.+|...++++|..+ +++.++.+.+++. |+.|.++.
T Consensus 3 ~~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~g~Ggy~~~~~~ 75 (90)
T 2g9o_A 3 STATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGLYRVSITS 75 (90)
T ss_dssp EEEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTTSTTTCEEECCC
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhccCCCeEEEEeC
Confidence 45678888 9999999999999999999999999999999999864 6788999999998 47776543
No 169
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=98.19 E-value=4.4e-06 Score=68.76 Aligned_cols=65 Identities=11% Similarity=0.106 Sum_probs=58.3
Q ss_pred EEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe--cCHHHHHHHHHHhcCceEEEe
Q 001200 1031 KAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD--IDAVPVVRKLRKQLCATELVS 1095 (1125)
Q Consensus 1031 ~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~--~d~~~~~~~l~k~~~~~~~~~ 1095 (1125)
++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+.++.
T Consensus 3 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~~ 70 (72)
T 1fvq_A 3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILR 70 (72)
T ss_dssp EEEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHHTCCEEEEE
T ss_pred EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHCCCceEEcc
Confidence 5678887 9999999999999999999999999999999999864 678889999999998887763
No 170
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=98.15 E-value=5.9e-06 Score=67.08 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=55.0
Q ss_pred eEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCce
Q 001200 1030 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCAT 1091 (1125)
Q Consensus 1030 ~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~ 1091 (1125)
.++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+
T Consensus 2 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 67 (69)
T 2qif_A 2 EQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV 67 (69)
T ss_dssp EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEE
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence 45678998 9999999999999999999999999999999999854 67788999999888743
No 171
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=98.15 E-value=3.7e-06 Score=70.81 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=59.0
Q ss_pred ceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCceEEE
Q 001200 1029 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1094 (1125)
Q Consensus 1029 ~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1094 (1125)
.+++.++|. |+|..|+.+|.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+.+.
T Consensus 7 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 76 (79)
T 1kvi_A 7 VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIH 76 (79)
T ss_dssp CEEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCCCEEEC
T ss_pred cEEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCCceEec
Confidence 567889997 9999999999999999999999999999999999865 57788999999999877654
No 172
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=98.13 E-value=4.5e-06 Score=68.58 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=53.2
Q ss_pred cceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEecCHHHHHHHHHHhcCceEE
Q 001200 1028 TKQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATEL 1093 (1125)
Q Consensus 1028 ~~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~ 1093 (1125)
|+++++++|. |+|.+|+.+|.+++.+++||.++.+|...++++|.++.+ .+.+++.|+.+.+
T Consensus 1 m~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~----~~~i~~~Gy~~~~ 63 (71)
T 2aj0_A 1 MAEKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS----IQQVEQAGAFEHL 63 (71)
T ss_dssp CCCEEEEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEESCC----HHHHHHHHTTTTC
T ss_pred CCeEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEecCc----HHHHHHhCCCccc
Confidence 5667889998 999999999999999999999999999999999998765 4466777775433
No 173
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=98.12 E-value=6.9e-06 Score=74.29 Aligned_cols=67 Identities=7% Similarity=0.143 Sum_probs=58.7
Q ss_pred cccceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCceE
Q 001200 1026 TRTKQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATE 1092 (1125)
Q Consensus 1026 ~~~~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~ 1092 (1125)
++.++++.++|. |+|..|+++|.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+.
T Consensus 4 ~~~~~~~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~Gy~~~ 74 (111)
T 2ofg_X 4 SSPLKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTLA 74 (111)
T ss_dssp --CCEEEEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTTTCCEE
T ss_pred CCcceEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHcCCeee
Confidence 345677899998 9999999999999999999999999999999999876 577889999999888664
No 174
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=98.11 E-value=5.2e-06 Score=67.38 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=54.7
Q ss_pred EEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCceEE
Q 001200 1033 VLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATEL 1093 (1125)
Q Consensus 1033 ~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~ 1093 (1125)
.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++.++.+.+++.|+.+++
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 67 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEV 67 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEE
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCccc
Confidence 46776 9999999999999999999999999999999999875 6788899999998887664
No 175
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=98.09 E-value=8e-06 Score=67.81 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=56.2
Q ss_pred eEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCceEE
Q 001200 1030 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATEL 1093 (1125)
Q Consensus 1030 ~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~ 1093 (1125)
+++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+..
T Consensus 4 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 71 (75)
T 1yjr_A 4 GVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSL 71 (75)
T ss_dssp CCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHHHCEEEE
T ss_pred eEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcee
Confidence 45678897 9999999999999999999999999999999999876 4667788889998887654
No 176
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=98.08 E-value=7.2e-06 Score=66.02 Aligned_cols=60 Identities=20% Similarity=0.129 Sum_probs=53.1
Q ss_pred EEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe--cCHHHHHHHHHHhcCc
Q 001200 1031 KAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD--IDAVPVVRKLRKQLCA 1090 (1125)
Q Consensus 1031 ~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~--~d~~~~~~~l~k~~~~ 1090 (1125)
++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ .++..+.+.+++.|+.
T Consensus 2 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~ 64 (66)
T 1yg0_A 2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQE 64 (66)
T ss_dssp EEEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred eEEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 3467786 9999999999999999999999999999999999876 5778899999988764
No 177
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=98.06 E-value=1e-05 Score=67.25 Aligned_cols=64 Identities=11% Similarity=0.134 Sum_probs=56.9
Q ss_pred ceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCceE
Q 001200 1029 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATE 1092 (1125)
Q Consensus 1029 ~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~ 1092 (1125)
+.++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|.-+ +++..+.+.+++.|+.+.
T Consensus 5 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~ 72 (76)
T 1opz_A 5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVV 72 (76)
T ss_dssp CEEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEE
T ss_pred ceEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCcee
Confidence 567789998 9999999999999999999999999999999999753 678889999999888654
No 178
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=2.5e-06 Score=94.98 Aligned_cols=178 Identities=16% Similarity=0.143 Sum_probs=106.4
Q ss_pred CCCCEEEeecCCCcc---------cCCCC-CCCCccEEEecCCCCC--------CCCChhhhcCCCCCcEEEeecCCccc
Q 001200 86 KNCPTIFLHDCKHWE---------VPEGL-EYPQLEFFCMSPRDHS--------IKIPNHVFAGMSNLRGLALSNMQFLS 147 (1125)
Q Consensus 86 ~~l~~L~l~~n~~~~---------l~~~~-~~~~L~~L~l~~n~~~--------~~l~~~~f~~l~~Lr~L~Ls~~~i~~ 147 (1125)
.+++.|.+....... +...+ .+++|+.|.+...... ..-...++..+++|+.|+++++.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 356777776544321 11112 5678999988654321 00122456788899999998874224
Q ss_pred cCcccCCCCCCcEEEccCCCCCC--ccccc--CCCCCcEEEccCC--C------CCCCchhh--ccCCCCCEEeecCCCC
Q 001200 148 LPSLFHLPLNLQTLCLDRCALGD--IAIIG--NLKKLEILSLVDS--N------IEQLPEEM--AQLTQLRLFDLSGCSK 213 (1125)
Q Consensus 148 lp~~l~~l~~Lr~L~L~~~~l~~--l~~~~--~L~~L~~L~Ls~~--~------i~~lp~~i--~~L~~L~~L~L~~~~~ 213 (1125)
++. +. +++|++|++..|.+.. +..++ .+++|++|+|+.+ . +..+...+ ..+++|++|++.+|.
T Consensus 187 l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~- 263 (362)
T 2ra8_A 187 IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE- 263 (362)
T ss_dssp CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-
T ss_pred ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-
Confidence 444 43 7889999998887752 23443 7888999988531 1 22222222 357889999998887
Q ss_pred CCc-cCccc--cCCCCCccEEEeecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCC
Q 001200 214 LKV-IPPNL--LSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1125)
Q Consensus 214 l~~-ip~~~--l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 273 (1125)
+.. .+..+ ...+++|++|+++.|.+.-.+. ......+..+++|+.|+++.|.+
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~-------~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGA-------RLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH-------HHHHTTHHHHTTCSEEECCSBBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHH-------HHHHhhcccCCcceEEECCCCcC
Confidence 432 11111 1357788999988877651110 11223345677888888887764
No 179
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=98.03 E-value=1.5e-05 Score=65.16 Aligned_cols=63 Identities=6% Similarity=0.121 Sum_probs=55.4
Q ss_pred ceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCce
Q 001200 1029 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCAT 1091 (1125)
Q Consensus 1029 ~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~ 1091 (1125)
+.++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+.+.|+.+
T Consensus 2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 68 (71)
T 2ldi_A 2 LKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTL 68 (71)
T ss_dssp CEEEEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTTCEE
T ss_pred cEEEEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence 355678998 9999999999999999999999999999999999864 57788899999888754
No 180
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=98.03 E-value=7.7e-06 Score=66.61 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=53.8
Q ss_pred EEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe--cCHHHHHHHHHHhcCceE
Q 001200 1033 VLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD--IDAVPVVRKLRKQLCATE 1092 (1125)
Q Consensus 1033 ~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~--~d~~~~~~~l~k~~~~~~ 1092 (1125)
.++|. |+|..|+.++.+++.+++||.++.+|...++++|..+ +++.++.+.+++.|+.+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~ 65 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYKAT 65 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTTSEEE
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCCCceE
Confidence 47776 9999999999999999999999999999999999765 577889999999888665
No 181
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=98.01 E-value=3.2e-06 Score=68.52 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=52.6
Q ss_pred EEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEecCHHHHHHHHHHhcCceE
Q 001200 1032 AVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATE 1092 (1125)
Q Consensus 1032 ~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d~~~~~~~l~k~~~~~~ 1092 (1125)
+.++|. |+|.+|+.++.+++.++ ||.++.+|...++++|.++.+ .++.+.+++.|+.+.
T Consensus 3 ~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~-~~i~~~i~~~Gy~~~ 62 (67)
T 2kyz_A 3 YVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENL-DSVLKKLEEIDYPVE 62 (67)
T ss_dssp EEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCH-HHHHHHHHTTTCCCC
T ss_pred EEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCH-HHHHHHHHHcCCcee
Confidence 568885 99999999999999999 999999999999999988766 788899998887543
No 182
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=97.99 E-value=2.1e-05 Score=68.89 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=59.3
Q ss_pred cceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCceEEE
Q 001200 1028 TKQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1094 (1125)
Q Consensus 1028 ~~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1094 (1125)
.|.++.++|. |+|.+|+.+|.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+.+.
T Consensus 14 ~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 84 (95)
T 2kkh_A 14 KLQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEANVR 84 (95)
T ss_dssp CSEEEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEES
T ss_pred ceEEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEe
Confidence 3567889997 9999999999999999999999999999999999876 47788999999999877654
No 183
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.98 E-value=0.00059 Score=77.58 Aligned_cols=154 Identities=10% Similarity=0.200 Sum_probs=94.6
Q ss_pred cccCCCC--CC-CCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCC---cccc-CcccCCCCCCcEEEccCCCCCCc
Q 001200 99 WEVPEGL--EY-PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ---FLSL-PSLFHLPLNLQTLCLDRCALGDI 171 (1125)
Q Consensus 99 ~~l~~~~--~~-~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~---i~~l-p~~l~~l~~Lr~L~L~~~~l~~l 171 (1125)
.++.... ++ ..|+.+.+..+ +. .+...+|.++.+|+.+.+..+. ++.+ ..+|..+.+|+.+.+..+ +..+
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eEcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 3454443 45 35788877654 32 6777778888888888887653 5555 346777777777766544 4444
Q ss_pred --ccccCCCCCcEEEccCCCCCCCch-hhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCcccccccccccc
Q 001200 172 --AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVG 248 (1125)
Q Consensus 172 --~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 248 (1125)
..|..+.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..+...++.. .+|+.+.+..+...
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~~~--------- 195 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKVTR--------- 195 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTCCE---------
T ss_pred hhhhhhhhcccccccccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCcccc---------
Confidence 56677778888877653 444443 5677777888777653 66677665544 56777776543322
Q ss_pred CCCCChhhhCCCCCCCEEEeecC
Q 001200 249 RSNASLQELKLLSHLTTLEIQIC 271 (1125)
Q Consensus 249 ~~~~~~~~L~~L~~L~~L~l~~~ 271 (1125)
.....+....++........
T Consensus 196 ---i~~~af~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 196 ---IGTNAFSECFALSTITSDSE 215 (394)
T ss_dssp ---ECTTTTTTCTTCCEEEECCS
T ss_pred ---cccchhhhccccceeccccc
Confidence 12234555556666555443
No 184
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=97.97 E-value=2.2e-05 Score=66.05 Aligned_cols=66 Identities=14% Similarity=0.090 Sum_probs=58.0
Q ss_pred ceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCceEEE
Q 001200 1029 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1094 (1125)
Q Consensus 1029 ~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1094 (1125)
|.++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+.+.|+.+...
T Consensus 2 m~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 71 (80)
T 1jww_A 2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLK 71 (80)
T ss_dssp CEEEEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHHHTSEEEEC
T ss_pred ceEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCeEEec
Confidence 456789998 9999999999999999999999999999999999754 57788999999989876653
No 185
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=5e-06 Score=80.82 Aligned_cols=41 Identities=12% Similarity=-0.065 Sum_probs=23.2
Q ss_pred ccceeccccCCccceecCCCccCCCCcccEEEEeccCceeee
Q 001200 616 KVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIF 657 (1125)
Q Consensus 616 ~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l 657 (1125)
+|++|+|++|+++++-...... .+++|+.|++++|++++..
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCTTCCCH
T ss_pred CCCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCCCCCch
Confidence 4444444444444432221111 4678888888888887754
No 186
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=3.2e-06 Score=82.13 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=16.1
Q ss_pred CccEEeEecCCCccccchhHhhhcCCCccEEEEccccch
Q 001200 820 NLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRML 858 (1125)
Q Consensus 820 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l 858 (1125)
+|++|+|++|+++++-.... +..+++|+.|+|++|+.+
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~-L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIA-LHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHH-GGGCTTCCEEEEESCTTC
T ss_pred CCCEEEcCCCCcCCHHHHHH-HhcCCCCCEEECCCCCCC
Confidence 34444444444444432222 223444444444444443
No 187
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.92 E-value=3.4e-06 Score=84.61 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=40.1
Q ss_pred hcCCCCCcEEEeecC-Ccc-----ccCcccCCCCCCcEEEccCCCCCC-----c-ccccCCCCCcEEEccCCCCCC----
Q 001200 129 FAGMSNLRGLALSNM-QFL-----SLPSLFHLPLNLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIEQ---- 192 (1125)
Q Consensus 129 f~~l~~Lr~L~Ls~~-~i~-----~lp~~l~~l~~Lr~L~L~~~~l~~-----l-~~~~~L~~L~~L~Ls~~~i~~---- 192 (1125)
+...+.|++|+|++| .+. .+...+...++|++|+|++|.+.. + ..+....+|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 444555666666655 543 233344455556666666665542 1 333344555555555555542
Q ss_pred -CchhhccCCCCCEEee
Q 001200 193 -LPEEMAQLTQLRLFDL 208 (1125)
Q Consensus 193 -lp~~i~~L~~L~~L~L 208 (1125)
+...+...++|++|++
T Consensus 112 ~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 112 ALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHhCCCceEEEe
Confidence 2333444445555555
No 188
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.86 E-value=2.4e-06 Score=101.84 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=47.0
Q ss_pred hheeccc--CCcCC---cccHHHHHHHHHHHHHHHhhcCCCccCC--CCCeEEccHHHHHHHHHHHcccc
Q 001200 4 LKYGTGL--HIFKG---TYTMQETRDRLYALVHKLKDYCLLLDGP--TEDWIRMHDLVREVAISIASRDR 66 (1125)
Q Consensus 4 i~~wi~~--g~~~~---~~~~~e~~~~~~~~~~~L~~r~l~~~~~--~~~~~~mHDli~dla~~i~~~e~ 66 (1125)
|++|+|+ ||+.. ..+.+++++ | |++|++|||+|..+ ...+|+|||+|||+|+.++++++
T Consensus 407 i~~w~a~~~G~i~~~~~~~~~~~~~~-~---l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 407 VKLWSCVIPVDICSNEEEQLDDEVAD-R---LKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHHHHSCC-------CCCTHHHHH-H---HHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred eeeeeeeccceeccCCCCCCHHHHHH-H---HHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 6789999 99974 446788887 7 99999999999653 45689999999999999998875
No 189
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.86 E-value=1.4e-05 Score=89.07 Aligned_cols=217 Identities=14% Similarity=0.091 Sum_probs=131.0
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCCccC--------CCCCeEEc-c-------HHHHHHHHHHHccccceEEecCCCcc---
Q 001200 17 YTMQETRDRLYALVHKLKDYCLLLDG--------PTEDWIRM-H-------DLVREVAISIASRDRHVFMLRNDIQI--- 77 (1125)
Q Consensus 17 ~~~~e~~~~~~~~~~~L~~r~l~~~~--------~~~~~~~m-H-------Dli~dla~~i~~~e~~~~~~~~~~~~--- 77 (1125)
.+.++|...+.+++.+=..||..... ...+.+.. . |++..+-..+....-....+..-...
T Consensus 44 ~~~~~a~~~~~~l~~~k~~kGy~~~~~~~~~~p~~~a~rl~~~~~~~~~~~~~~~~fl~~~~~~~v~~L~lg~~~~~~~~ 123 (362)
T 2ra8_A 44 SSAGEAEKAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGXWGYEGED 123 (362)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCEECCHHHHHHCCCCEEEECCCHHHHHTTCCHHHHHHHCTTGGGCSEEEECCCCSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccccCCCCchhhceEEEeecCCcccHHHHHHHHhcCCCchhcceEEEcccccCCCc
Confidence 36788888888878877788775421 11123322 2 23333333322222111222211111
Q ss_pred C-------CCcccCCCCCCEEEeecCCCcc----------cCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEE
Q 001200 78 E-------WPVADMLKNCPTIFLHDCKHWE----------VPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLA 139 (1125)
Q Consensus 78 ~-------~~~~~~~~~l~~L~l~~n~~~~----------l~~~~-~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~ 139 (1125)
. ......+++++.|.+......+ +...+ .+++|+.|.+.+|... .++. +. +++|+.|+
T Consensus 124 ~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~ 199 (362)
T 2ra8_A 124 CSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLE 199 (362)
T ss_dssp SHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEE
T ss_pred HHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEE
Confidence 0 0001236799999997654321 11112 6799999999987422 4544 33 88999999
Q ss_pred eecCCcccc-Cccc--CCCCCCcEEEccCC--C------CCCc-ccc--cCCCCCcEEEccCCCCCC-Cchhh---ccCC
Q 001200 140 LSNMQFLSL-PSLF--HLPLNLQTLCLDRC--A------LGDI-AII--GNLKKLEILSLVDSNIEQ-LPEEM---AQLT 201 (1125)
Q Consensus 140 Ls~~~i~~l-p~~l--~~l~~Lr~L~L~~~--~------l~~l-~~~--~~L~~L~~L~Ls~~~i~~-lp~~i---~~L~ 201 (1125)
+..+.+..- ...+ ..+++|++|+|+.+ . +..+ ..+ ..+++|++|+|++|.+.. .+..+ ..++
T Consensus 200 L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~ 279 (362)
T 2ra8_A 200 IISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279 (362)
T ss_dssp EECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG
T ss_pred EecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC
Confidence 998887521 1223 37899999998632 1 2222 222 357999999999998762 22223 3588
Q ss_pred CCCEEeecCCCCCCc-----cCccccCCCCCccEEEeecCccc
Q 001200 202 QLRLFDLSGCSKLKV-----IPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 202 ~L~~L~L~~~~~l~~-----ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
+|++|+|+.|. +.. ++.+ +..+++|+.|++++|.+.
T Consensus 280 ~L~~LdLs~n~-L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 280 QLETMDISAGV-LTDEGARLLLDH-VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GCSEEECCSSC-CBHHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred CCCEEECCCCC-CChHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence 99999999887 765 3333 356799999999999876
No 190
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.83 E-value=0.00074 Score=76.73 Aligned_cols=110 Identities=13% Similarity=0.225 Sum_probs=84.4
Q ss_pred CCChhhhcCCC-CCcEEEeecCCcccc-CcccCCCCCCcEEEccCCC---CCCc--ccccCCCCCcEEEccCCCCCCCch
Q 001200 123 KIPNHVFAGMS-NLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA---LGDI--AIIGNLKKLEILSLVDSNIEQLPE 195 (1125)
Q Consensus 123 ~l~~~~f~~l~-~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~~---l~~l--~~~~~L~~L~~L~Ls~~~i~~lp~ 195 (1125)
.+.+.+|.+.+ .|+.+.+..+ ++.+ ..+|.++.+|+.+.+..+. ++.+ ..|.++.+|+.+.+..+ +..++.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 56777888885 5999999754 7777 4689999999999998764 5555 66778888888777654 566653
Q ss_pred -hhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecC
Q 001200 196 -EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (1125)
Q Consensus 196 -~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~ 236 (1125)
.+..+.+|+.+.+... +..++..++....+|+.+.+..+
T Consensus 131 ~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 5788889999988653 67788877888889988887654
No 191
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=97.78 E-value=3.1e-05 Score=74.72 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=58.8
Q ss_pred eEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCceEEE
Q 001200 1030 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1094 (1125)
Q Consensus 1030 ~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1094 (1125)
.++.++|. |+|..|+.+|.+++.+++||.++.+|...++++|.-+ +++.++.+.+++.|+.+.+.
T Consensus 74 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 142 (151)
T 1p6t_A 74 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLK 142 (151)
T ss_dssp EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEES
T ss_pred cccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEc
Confidence 56789997 9999999999999999999999999999999999843 78899999999999987654
No 192
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.74 E-value=1.1e-05 Score=80.95 Aligned_cols=118 Identities=12% Similarity=0.114 Sum_probs=89.7
Q ss_pred cCcccCCCCCCcEEEccCC-CCCC-----c-ccccCCCCCcEEEccCCCCCC-----CchhhccCCCCCEEeecCCCCCC
Q 001200 148 LPSLFHLPLNLQTLCLDRC-ALGD-----I-AIIGNLKKLEILSLVDSNIEQ-----LPEEMAQLTQLRLFDLSGCSKLK 215 (1125)
Q Consensus 148 lp~~l~~l~~Lr~L~L~~~-~l~~-----l-~~~~~L~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~ 215 (1125)
+...+...++|++|+|++| .+.. + ..+....+|++|+|++|.+.. +...+....+|++|+|++|. +.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-IS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence 3446778899999999999 8873 3 667788999999999998873 44566777899999999998 76
Q ss_pred c-----cCccccCCCCCccEEEe--ecCccccccccccccCCCCChhhhCCCCCCCEEEeecCCCc
Q 001200 216 V-----IPPNLLSGLSRLEDLYM--GNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (1125)
Q Consensus 216 ~-----ip~~~l~~L~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 274 (1125)
. +... +...++|++|++ ++|.+...+. ......+...++|++|++++|.+.
T Consensus 107 ~~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g~-------~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEA-LQSNTSLIELRIDNQSQPLGNNVE-------MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHHH-------HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHH-HHhCCCceEEEecCCCCCCCHHHH-------HHHHHHHHhCCCcCEEeccCCCCC
Confidence 5 2333 677789999999 7788762211 123345667788999999998763
No 193
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=97.74 E-value=4.9e-05 Score=73.04 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=57.8
Q ss_pred eEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCceEE
Q 001200 1030 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATEL 1093 (1125)
Q Consensus 1030 ~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~ 1093 (1125)
+++.++|. |+|.+|+.+|.+++.+++||.++.+|...++++|..+ +++.++.+.+++.|+.+.+
T Consensus 80 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 147 (149)
T 2ew9_A 80 GNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASL 147 (149)
T ss_dssp SEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTCEEEC
T ss_pred ceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhCCCceEe
Confidence 46789997 9999999999999999999999999999999999875 5788999999999987653
No 194
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=97.64 E-value=0.00011 Score=74.72 Aligned_cols=66 Identities=12% Similarity=0.179 Sum_probs=59.3
Q ss_pred eEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCceEEEe
Q 001200 1030 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELVS 1095 (1125)
Q Consensus 1030 ~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~~ 1095 (1125)
.++.++|. |+|.+|+.+|.+++.+++||.++.+|...++++|..+ +++.++.+.+++.|+.+.++.
T Consensus 122 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 191 (202)
T 2rop_A 122 STTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVS 191 (202)
T ss_dssp EEEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSCEEEC-
T ss_pred eEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEcC
Confidence 56889997 9999999999999999999999999999999999864 678899999999999887653
No 195
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.56 E-value=4.1e-05 Score=80.50 Aligned_cols=78 Identities=19% Similarity=0.199 Sum_probs=41.9
Q ss_pred CCCCCcEEEccCCCCCCccc----ccCCCCCcEEEccCCCCCCCchhhccCC--CCCEEeecCCCCCCccCc------cc
Q 001200 154 LPLNLQTLCLDRCALGDIAI----IGNLKKLEILSLVDSNIEQLPEEMAQLT--QLRLFDLSGCSKLKVIPP------NL 221 (1125)
Q Consensus 154 ~l~~Lr~L~L~~~~l~~l~~----~~~L~~L~~L~Ls~~~i~~lp~~i~~L~--~L~~L~L~~~~~l~~ip~------~~ 221 (1125)
++++|++|+|++|.|..+.. +..+++|++|+|++|.|..+. .+..+. +|++|+|++|.....+|. .+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 45566666666666655432 235666666666666666552 333333 666666666652222331 22
Q ss_pred cCCCCCccEEE
Q 001200 222 LSGLSRLEDLY 232 (1125)
Q Consensus 222 l~~L~~L~~L~ 232 (1125)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45566666665
No 196
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.55 E-value=9.4e-06 Score=85.41 Aligned_cols=62 Identities=26% Similarity=0.439 Sum_probs=35.7
Q ss_pred cCCCCCcEEEccCCCCCCCc---hhhccCCCCCEEeecCCCCCCccCccccCCCC--CccEEEeecCccc
Q 001200 175 GNLKKLEILSLVDSNIEQLP---EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLS--RLEDLYMGNTSVK 239 (1125)
Q Consensus 175 ~~L~~L~~L~Ls~~~i~~lp---~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~--~L~~L~l~~~~~~ 239 (1125)
.++++|+.|+|++|.+..++ ..+..+++|++|+|++|. +..+.. +..+. +|++|++.+|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE--LDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGG--GGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchh--hhhcccCCcceEEccCCcCc
Confidence 34566666666666665443 345566666666666665 555422 33333 6666666666654
No 197
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=97.51 E-value=0.00022 Score=68.39 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=59.0
Q ss_pred ceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCceEEE
Q 001200 1029 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1094 (1125)
Q Consensus 1029 ~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1094 (1125)
|+++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++.++.+.+++.|+.+.++
T Consensus 3 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 72 (149)
T 2ew9_A 3 PQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVM 72 (149)
T ss_dssp CEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEEC
T ss_pred cEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCCceEee
Confidence 678899997 9999999999999999999999999999999999764 57788999999989877654
No 198
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=97.05 E-value=0.00087 Score=67.98 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=53.0
Q ss_pred cccceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHh
Q 001200 1026 TRTKQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQ 1087 (1125)
Q Consensus 1026 ~~~~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~ 1087 (1125)
+..+.++.++|. |+|.+|+.+|.+++.+++||.++.++...++++|..+ +++..+.+.+++.
T Consensus 16 ~~~~~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 81 (202)
T 2rop_A 16 GSHVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEAL 81 (202)
T ss_dssp ----CEEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTS
T ss_pred CCccEEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 344677889998 9999999999999999999999999999999999865 5778888888876
No 199
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=96.95 E-value=0.0017 Score=62.21 Aligned_cols=62 Identities=11% Similarity=0.148 Sum_probs=53.8
Q ss_pred ceEEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCc
Q 001200 1029 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCA 1090 (1125)
Q Consensus 1029 ~~~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~ 1090 (1125)
+.++.++|. |+|.+|+.++.+++.+++||.++.++...++++|..+ +++..+.+.+++.|+.
T Consensus 5 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~ 70 (151)
T 1p6t_A 5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYH 70 (151)
T ss_dssp CEEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCE
T ss_pred ceEEEEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHcCCc
Confidence 356778888 9999999999999999999999999999999988754 5778888889887764
No 200
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=96.46 E-value=0.0052 Score=74.94 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=56.1
Q ss_pred EEEEEEE-ecchhHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe---cCHHHHHHHHHHhcCce
Q 001200 1031 KAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCAT 1091 (1125)
Q Consensus 1031 ~~~~kv~-~~c~~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~---~d~~~~~~~l~k~~~~~ 1091 (1125)
++.++|+ |+|.+|+.++.+++.+++||+++.+|...++++|.-+ +++.++.+.+++.|+.+
T Consensus 3 ~~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy~~ 67 (723)
T 3j09_A 3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYGV 67 (723)
T ss_dssp CEEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCCEE
T ss_pred eEEEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcCCcc
Confidence 4678998 9999999999999999999999999999999999754 78999999999988865
No 201
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.16 E-value=0.025 Score=63.59 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=98.2
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccCCCCCCc--ccccCCCCCcE
Q 001200 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEI 182 (1125)
Q Consensus 106 ~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~ 182 (1125)
.+..|+.+.+..+- ..+...+|.++..|+.+.+..+ +..+ ..+|..+.+|+.+.+..+ +..+ ..|.++.+|+.
T Consensus 215 ~~~~l~~i~~~~~~--~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSGV--TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTTC--CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccce--eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 67888888886542 2567777888999999998765 6666 457888889999988654 5544 67888899999
Q ss_pred EEccCCCCCCCch-hhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecC
Q 001200 183 LSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (1125)
Q Consensus 183 L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~ 236 (1125)
+++.++.++.++. .|.++.+|+.+.+..+ ++.|+..+|.++.+|+.+.+..+
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc
Confidence 9998888888864 6888999999999753 78888888899999998887654
No 202
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.15 E-value=0.025 Score=63.64 Aligned_cols=155 Identities=13% Similarity=0.212 Sum_probs=114.0
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCcccc-CcccCCCCCCcEEEccCCCCCCc--ccccCCCCCcE
Q 001200 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEI 182 (1125)
Q Consensus 106 ~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~Lr~L~L~~~~l~~l--~~~~~L~~L~~ 182 (1125)
.+..+..+.+..... .+....|....+|+.+.+..+ +..+ ..++..+.+|+.+.+..+ +..+ ..+.++.+|+.
T Consensus 192 ~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 192 AAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp TTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred cccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 345556665544322 345566788899999998755 4545 457889999999999765 6655 67888999999
Q ss_pred EEccCCCCCCCch-hhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccccccccccccCCCCChhhhCCCC
Q 001200 183 LSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLS 261 (1125)
Q Consensus 183 L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 261 (1125)
+.+.. ++..++. .|..+.+|+.+.+..+. +..|+..+|.++.+|+.+.+..+ +. ......+.++.
T Consensus 268 i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-----------~I~~~aF~~C~ 333 (379)
T 4h09_A 268 LNFYA-KVKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LK-----------TIQVYAFKNCK 333 (379)
T ss_dssp EEECC-CCSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-----------EECTTTTTTCT
T ss_pred ccccc-cceeccccccccccccccccccccc-cceehhhhhcCCCCCCEEEcCcc-cc-----------EEHHHHhhCCC
Confidence 99976 4777764 68899999999998877 89999999999999999998654 32 12345678888
Q ss_pred CCCEEEeecCCCcccCCc
Q 001200 262 HLTTLEIQICDAMILPKG 279 (1125)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~ 279 (1125)
+|+.+.+..+ +..+...
T Consensus 334 ~L~~i~ip~~-v~~I~~~ 350 (379)
T 4h09_A 334 ALSTISYPKS-ITLIESG 350 (379)
T ss_dssp TCCCCCCCTT-CCEECTT
T ss_pred CCCEEEECCc-cCEEchh
Confidence 8988888543 4444443
No 203
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.06 E-value=0.033 Score=51.37 Aligned_cols=53 Identities=9% Similarity=0.124 Sum_probs=24.9
Q ss_pred EEEeecCCCc--ccCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCC
Q 001200 90 TIFLHDCKHW--EVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ 144 (1125)
Q Consensus 90 ~L~l~~n~~~--~l~~~~~~~~L~~L~l~~n~~~~~l~~~~f~~l~~Lr~L~Ls~~~ 144 (1125)
+++.+++.++ .+|..+. ++|+.|+|++|.+. .++..+|..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp-~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP-VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC-TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC-cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCC
Confidence 4455555554 5554331 23445555555444 4444444444444444444443
No 204
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.93 E-value=0.03 Score=51.62 Aligned_cols=55 Identities=22% Similarity=0.425 Sum_probs=42.7
Q ss_pred EEEccCCCCC--CCchhhccCCCCCEEeecCCCCCCccCccccCCCCCccEEEeecCccc
Q 001200 182 ILSLVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1125)
Q Consensus 182 ~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~ip~~~l~~L~~L~~L~l~~~~~~ 239 (1125)
+++.++++++ .+|..+. .+|++|+|++|. +..+|.++|..+.+|++|+|.+|...
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 6777777777 7876443 468888888888 88888887888888888888887653
No 205
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.16 E-value=0.034 Score=54.92 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=31.2
Q ss_pred CCCCCcEEEeecC-Ccc-----ccCcccCCCCCCcEEEccCCCCCC-----c-ccccCCCCCcEEEccCCCCC
Q 001200 131 GMSNLRGLALSNM-QFL-----SLPSLFHLPLNLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIE 191 (1125)
Q Consensus 131 ~l~~Lr~L~Ls~~-~i~-----~lp~~l~~l~~Lr~L~L~~~~l~~-----l-~~~~~L~~L~~L~Ls~~~i~ 191 (1125)
+-+.|+.|+|+++ .|. .+-.++..-+.|+.|+|++|.|.+ + ..+..-+.|++|+|++|.|.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3445555555553 443 233344445566666666666542 2 33334455666666666554
No 206
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.46 E-value=0.032 Score=55.17 Aligned_cols=106 Identities=11% Similarity=0.029 Sum_probs=60.9
Q ss_pred CCCccEEEecCC-CCCCC---CChhhhcCCCCCcEEEeecCCcc-----ccCcccCCCCCCcEEEccCCCCCC-----c-
Q 001200 107 YPQLEFFCMSPR-DHSIK---IPNHVFAGMSNLRGLALSNMQFL-----SLPSLFHLPLNLQTLCLDRCALGD-----I- 171 (1125)
Q Consensus 107 ~~~L~~L~l~~n-~~~~~---l~~~~f~~l~~Lr~L~Ls~~~i~-----~lp~~l~~l~~Lr~L~L~~~~l~~-----l- 171 (1125)
-+.|+.|+|++| .+... .-...+..-+.|+.|+|++|.|. .+...+..-+.|++|+|++|.|.. +
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 456666777654 43210 01123455567888888888776 233445555678888888888763 2
Q ss_pred ccccCCCCCcEEEccCCCCCC--------CchhhccCCCCCEEeecCCC
Q 001200 172 AIIGNLKKLEILSLVDSNIEQ--------LPEEMAQLTQLRLFDLSGCS 212 (1125)
Q Consensus 172 ~~~~~L~~L~~L~Ls~~~i~~--------lp~~i~~L~~L~~L~L~~~~ 212 (1125)
..+..-..|++|+|+++.... +-..+..-+.|+.|+++.+.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 455566667777777543311 22234445566666665543
No 207
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=91.53 E-value=0.58 Score=38.76 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=50.2
Q ss_pred cceEEEEEEEecchhHHHHHHhhhcCCCCeeEE-----EeeCCCC--eEEEEEe-cCHHHHHHHHHHhcC
Q 001200 1028 TKQKAVLKLEIHGEKARQKAFSIVSKFTGVLSI-----LFDPKDK--KMIVIGD-IDAVPVVRKLRKQLC 1089 (1125)
Q Consensus 1028 ~~~~~~~kv~~~c~~c~~~~~~~~~~~~gv~~~-----~~~~~~~--~~~v~g~-~d~~~~~~~l~k~~~ 1089 (1125)
..+.+||-|...-+--.-.+.+++++++||+.| ++|.+.. ++||.|+ +|-+++.+.+.+.|+
T Consensus 5 ~iRRlVLDVlKPh~P~ivdlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~Gg 74 (100)
T 3bpd_A 5 GLRRLVLDVLKPHEPKTIVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGG 74 (100)
T ss_dssp SEEEEEEEEEEESCSCHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTC
T ss_pred cceEEEEEecCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCC
Confidence 356788888766666677888999999998875 4555555 6999998 999999999999887
No 208
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=91.24 E-value=0.095 Score=64.57 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=36.0
Q ss_pred hhheecccCCcCCcccHHHHHHHHHHHHHHHhhcCCCccCCCCCeEEccHHHHHHHH
Q 001200 3 LLKYGTGLHIFKGTYTMQETRDRLYALVHKLKDYCLLLDGPTEDWIRMHDLVREVAI 59 (1125)
Q Consensus 3 Li~~wi~~g~~~~~~~~~e~~~~~~~~~~~L~~r~l~~~~~~~~~~~mHDli~dla~ 59 (1125)
|+.+|+++| ++.+..+ |++|++||||+..+...+|+||||+++++.
T Consensus 392 La~LW~aeG--------eedAe~~---L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 392 LSLIWFDVI--------KSDVMVV---VNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHCSSC--------SHHHHHH---HHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHhcCCC--------HHHHHHH---HHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 567888887 1234444 999999999998656689999999999763
No 209
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=90.02 E-value=1.7 Score=36.07 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=50.2
Q ss_pred ccceEEEEEEEecchhHHHHHHhhhcCCCCeeEE-----EeeCCCC--eEEEEEe-cCHHHHHHHHHHhcC
Q 001200 1027 RTKQKAVLKLEIHGEKARQKAFSIVSKFTGVLSI-----LFDPKDK--KMIVIGD-IDAVPVVRKLRKQLC 1089 (1125)
Q Consensus 1027 ~~~~~~~~kv~~~c~~c~~~~~~~~~~~~gv~~~-----~~~~~~~--~~~v~g~-~d~~~~~~~l~k~~~ 1089 (1125)
+..+.+||-|...-+--.-.+-+++++++||+.| ++|.+.. ++||.|+ +|-+++.+.+.+.|+
T Consensus 4 ~~irRlVLDVlKPh~p~i~d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE~~Gg 74 (97)
T 2raq_A 4 KGLIRIVLDILKPHEPIIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGG 74 (97)
T ss_dssp CSEEEEEEEEECCSCSCHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTC
T ss_pred cCceEEEEEecCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCC
Confidence 4457788888866555567788888999988765 4566655 6999998 999999999999887
No 210
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=89.26 E-value=1.2 Score=36.68 Aligned_cols=60 Identities=18% Similarity=0.260 Sum_probs=46.6
Q ss_pred eEEEEEEEec-chhHHHHHHhhhcCCCCeeEE-----EeeCCCC--eEEEEEe-cCHHHHHHHHHHhcC
Q 001200 1030 QKAVLKLEIH-GEKARQKAFSIVSKFTGVLSI-----LFDPKDK--KMIVIGD-IDAVPVVRKLRKQLC 1089 (1125)
Q Consensus 1030 ~~~~~kv~~~-c~~c~~~~~~~~~~~~gv~~~-----~~~~~~~--~~~v~g~-~d~~~~~~~l~k~~~ 1089 (1125)
+.+||-|... -+--.-.+.+++++++||+.| ++|.+.. ++||.|+ +|-+++.+.+.+.|+
T Consensus 5 rRlVLDVlKP~h~P~ivd~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg 73 (96)
T 2x3d_A 5 RRLVLDVLKPIRGTSIVDLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGC 73 (96)
T ss_dssp EEEEEEEEEESSSSCHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTTC
T ss_pred EEEEEEcccCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCC
Confidence 5667777644 444466778889999998875 4555555 6999998 999999999999887
No 211
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=88.72 E-value=0.23 Score=65.62 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=32.3
Q ss_pred HHHHHHHhhcCCCccCC--CCCeEEccHHHHHHHHHHHcccc
Q 001200 27 YALVHKLKDYCLLLDGP--TEDWIRMHDLVREVAISIASRDR 66 (1125)
Q Consensus 27 ~~~~~~L~~r~l~~~~~--~~~~~~mHDli~dla~~i~~~e~ 66 (1125)
..++++|++++|++... ...+|+|||+||++|+..+.+|.
T Consensus 412 ~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 412 EDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp HHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred HHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHHH
Confidence 34499999999999643 23369999999999999987763
No 212
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=72.18 E-value=2.2 Score=50.70 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCCCccCC--CCCeEEccHHHHHHHHHHHc
Q 001200 26 LYALVHKLKDYCLLLDGP--TEDWIRMHDLVREVAISIAS 63 (1125)
Q Consensus 26 ~~~~~~~L~~r~l~~~~~--~~~~~~mHDli~dla~~i~~ 63 (1125)
...++++|++++|++... ....|.|||++|++++..+.
T Consensus 411 ~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 411 VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 344599999999998532 34589999999999998743
No 213
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=62.17 E-value=22 Score=29.98 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=32.5
Q ss_pred hHHHHHHhhhcCCCCeeEEEeeCCCCeEEEEEe-cCHHHHHHHHHHhc
Q 001200 1042 KARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD-IDAVPVVRKLRKQL 1088 (1125)
Q Consensus 1042 ~c~~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~-~d~~~~~~~l~k~~ 1088 (1125)
+=...|.++|.++|||+--..|.+.+|++|+=+ -+..++.+.+++.-
T Consensus 17 ~~~~~V~~~L~~ipgvEi~~~~~~~GkiVV~iEa~~~~~l~~~i~~I~ 64 (95)
T 2jsx_A 17 ERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLIQTIESVR 64 (95)
T ss_dssp TSHHHHHHHHTTSTTEEEEEEETTTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCCCeEEEEecCCCCCEEEEEEeCCHHHHHHHHHHHh
Confidence 447899999999999965566776777555544 45556666555433
No 214
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=37.77 E-value=45 Score=27.76 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=28.4
Q ss_pred HHHHhhhcCCCCeeEEEeeCCCCeEEEEEecCHHHHHHH
Q 001200 1045 QKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRK 1083 (1125)
Q Consensus 1045 ~~~~~~~~~~~gv~~~~~~~~~~~~~v~g~~d~~~~~~~ 1083 (1125)
-|.-+.+.+..||.+|++|.++++|+|.| .|++.+-++
T Consensus 34 Gk~Ik~I~e~tGv~~IdI~eddG~V~I~g-~~~ea~~~A 71 (91)
T 2cpq_A 34 GSNIQQARKVPGVTAIELDEDTGTFRIYG-ESADAVKKA 71 (91)
T ss_dssp THHHHHHHTSTTEEEEEEETTTTEEEEEE-SSHHHHHHH
T ss_pred cHHHHHHHHHhCCeEEEEEcCCCEEEEEE-CCHHHHHHH
Confidence 45666777778998899997779999999 455544333
No 215
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=36.08 E-value=21 Score=30.73 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=29.0
Q ss_pred EEEEEEEecchhHH------HHHHhhhcCCCCeeEEEeeCC
Q 001200 1031 KAVLKLEIHGEKAR------QKAFSIVSKFTGVLSILFDPK 1065 (1125)
Q Consensus 1031 ~~~~kv~~~c~~c~------~~~~~~~~~~~gv~~~~~~~~ 1065 (1125)
+|.+++.+.+.+|. ..+.+++.+++||.+|+++..
T Consensus 42 ~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~ 82 (103)
T 3cq1_A 42 RAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVT 82 (103)
T ss_dssp EEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEEC
T ss_pred EEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEe
Confidence 57788888888775 788999999999999988743
No 216
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*
Probab=30.81 E-value=40 Score=29.61 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=27.8
Q ss_pred cCCCCeeEEEeeCCCCeEEEEEe-cCHHHHHHHH
Q 001200 1052 SKFTGVLSILFDPKDKKMIVIGD-IDAVPVVRKL 1084 (1125)
Q Consensus 1052 ~~~~gv~~~~~~~~~~~~~v~g~-~d~~~~~~~l 1084 (1125)
.++|||+.+..|+.+++|+-.-+ +|-..+.+.+
T Consensus 118 ~aiPGVTtlklDm~~~Rv~eh~DlmDyqTm~DQl 151 (154)
T 3gzb_A 118 VAIPAVTSLKLDMLNRRVTEHVDLIDYQTMSDQL 151 (154)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEECHHHHHHHH
T ss_pred EecCceEEEeecCCccchhhhHhHHhHHHHHHHh
Confidence 56899999999999999998777 8887776654
No 217
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=30.47 E-value=76 Score=26.67 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=29.6
Q ss_pred eEEEEEEEecchhHHHHHHhhhcCCCCeeEEEeeC
Q 001200 1030 QKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDP 1064 (1125)
Q Consensus 1030 ~~~~~kv~~~c~~c~~~~~~~~~~~~gv~~~~~~~ 1064 (1125)
-++|+.+.-...+-..+..+++.++|||.++.+=.
T Consensus 42 GkiVV~iEa~~~~~l~~~i~~I~~i~GVlst~lvy 76 (95)
T 2jsx_A 42 GQLIVVVEAEDSETLIQTIESVRNVEGVLAVSLVY 76 (95)
T ss_dssp TEEEEEEEESSHHHHHHHHHHHTTSTTEEEEEESS
T ss_pred CCEEEEEEeCCHHHHHHHHHHHhcCCCccEEeEEE
Confidence 47999999888877777789999999999988744
No 218
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=29.67 E-value=31 Score=29.59 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=28.0
Q ss_pred EEEEEEEecchhHH------HHHHhhhcCCCCeeEEEeeCC
Q 001200 1031 KAVLKLEIHGEKAR------QKAFSIVSKFTGVLSILFDPK 1065 (1125)
Q Consensus 1031 ~~~~kv~~~c~~c~------~~~~~~~~~~~gv~~~~~~~~ 1065 (1125)
+|.+.+.+...+|. ..+.+++.+++||.+|+++..
T Consensus 43 ~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l~ 83 (103)
T 1uwd_A 43 NVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELT 83 (103)
T ss_dssp EEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred EEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEEe
Confidence 57788877777765 678899999999999988743
No 219
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=26.23 E-value=93 Score=21.77 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=28.2
Q ss_pred eEEEEEEEecchhHHHHHHhhhcCC---CCeeEEEeeCCCCeEEEEEecC
Q 001200 1030 QKAVLKLEIHGEKARQKAFSIVSKF---TGVLSILFDPKDKKMIVIGDID 1076 (1125)
Q Consensus 1030 ~~~~~kv~~~c~~c~~~~~~~~~~~---~gv~~~~~~~~~~~~~v~g~~d 1076 (1125)
..|.+.+...-.+-+.|...++-++ -|-..+.+.-+.++|||.|..+
T Consensus 2 ervrisitartkkeaekfaailikvfaelgyndinvtwdgdtvtvegqle 51 (62)
T 2gjh_A 2 ERVRISITARTKKEAEKFAAILIKVFAELGYNDINVTWDGDTVTVEGQLE 51 (62)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHTTCCSCEEEECSSCEEEEEECC
T ss_pred ceEEEEEEecchhHHHHHHHHHHHHHHHhCcccceeEEcCCEEEEEeEEc
Confidence 4455666655555555544443332 3666666666677899999754
No 220
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=24.15 E-value=35 Score=29.53 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=28.0
Q ss_pred EEEEEEEecchhH------HHHHHhhh-cCCCCeeEEEeeCC
Q 001200 1031 KAVLKLEIHGEKA------RQKAFSIV-SKFTGVLSILFDPK 1065 (1125)
Q Consensus 1031 ~~~~kv~~~c~~c------~~~~~~~~-~~~~gv~~~~~~~~ 1065 (1125)
+|.+.+.+...+| +..|.+++ .+++||.+|+++..
T Consensus 45 ~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l~ 86 (108)
T 3lno_A 45 NAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNVV 86 (108)
T ss_dssp CEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEEC
T ss_pred eEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEEE
Confidence 5778888777777 47888899 89999999887654
Done!