Query 001201
Match_columns 1124
No_of_seqs 729 out of 6228
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 18:34:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.6E-33 7.9E-38 360.9 30.0 512 86-755 69-588 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.3E-32 5E-37 353.5 31.1 517 108-812 69-588 (968)
3 PLN03210 Resistant to P. syrin 100.0 3E-28 6.4E-33 313.7 29.1 417 30-600 472-910 (1153)
4 KOG4658 Apoptotic ATPase [Sign 100.0 1.1E-28 2.4E-33 299.2 15.0 237 2-271 432-678 (889)
5 KOG4194 Membrane glycoprotein 99.9 2.3E-25 4.9E-30 240.0 9.6 376 83-600 49-432 (873)
6 KOG4194 Membrane glycoprotein 99.9 3.6E-24 7.7E-29 230.9 6.8 340 85-450 77-432 (873)
7 KOG0618 Serine/threonine phosp 99.9 4.5E-25 9.8E-30 251.1 -5.3 482 90-701 2-489 (1081)
8 KOG0472 Leucine-rich repeat pr 99.9 6.1E-26 1.3E-30 234.1 -16.3 256 87-362 46-308 (565)
9 PLN03210 Resistant to P. syrin 99.9 1.8E-20 3.9E-25 241.8 27.1 319 84-450 556-886 (1153)
10 KOG0618 Serine/threonine phosp 99.9 7.9E-24 1.7E-28 241.1 -4.5 465 88-655 23-490 (1081)
11 KOG0444 Cytoskeletal regulator 99.9 1.4E-23 3E-28 227.3 -4.7 382 107-648 6-393 (1255)
12 KOG0472 Leucine-rich repeat pr 99.8 5.2E-25 1.1E-29 227.4 -18.6 194 85-295 67-287 (565)
13 KOG0444 Cytoskeletal regulator 99.8 1.2E-22 2.6E-27 220.1 -4.8 239 84-334 53-300 (1255)
14 KOG0617 Ras suppressor protein 99.7 2.2E-18 4.7E-23 157.8 -5.0 167 98-280 23-192 (264)
15 KOG4237 Extracellular matrix p 99.6 4.7E-17 1E-21 169.0 -2.9 143 92-237 52-199 (498)
16 KOG0617 Ras suppressor protein 99.6 5.6E-17 1.2E-21 148.6 -4.3 152 84-239 31-186 (264)
17 PRK15387 E3 ubiquitin-protein 99.5 3E-13 6.5E-18 161.5 16.6 158 87-278 202-359 (788)
18 PRK15387 E3 ubiquitin-protein 99.5 8.5E-13 1.8E-17 157.7 18.0 251 68-390 205-455 (788)
19 KOG1603 Copper chaperone [Inor 99.5 2.5E-13 5.5E-18 112.4 9.0 68 1026-1093 2-70 (73)
20 PRK15370 E3 ubiquitin-protein 99.4 1.6E-12 3.6E-17 156.6 16.5 178 84-291 197-375 (754)
21 KOG4237 Extracellular matrix p 99.4 1.7E-14 3.6E-19 150.3 -1.8 141 70-212 52-199 (498)
22 PRK15370 E3 ubiquitin-protein 99.4 1.2E-12 2.6E-17 157.8 12.8 119 88-218 180-299 (754)
23 KOG4658 Apoptotic ATPase [Sign 99.2 5.3E-12 1.1E-16 154.6 6.5 128 131-272 521-653 (889)
24 KOG4341 F-box protein containi 99.2 4.4E-13 9.6E-18 141.2 -8.1 93 558-656 139-231 (483)
25 PF14580 LRR_9: Leucine-rich r 99.1 8.4E-11 1.8E-15 115.1 4.8 131 130-270 16-149 (175)
26 KOG0532 Leucine-rich repeat (L 99.1 4.8E-12 1E-16 138.2 -5.0 178 85-280 74-253 (722)
27 cd00116 LRR_RI Leucine-rich re 99.1 5E-11 1.1E-15 134.1 2.5 181 85-274 22-234 (319)
28 KOG0532 Leucine-rich repeat (L 99.1 8.1E-12 1.8E-16 136.5 -3.9 187 90-294 54-245 (722)
29 KOG4341 F-box protein containi 99.0 2.1E-11 4.5E-16 128.8 -2.7 38 714-751 401-440 (483)
30 PF14580 LRR_9: Leucine-rich r 99.0 2.7E-10 5.8E-15 111.6 4.4 119 87-208 20-147 (175)
31 PF00403 HMA: Heavy-metal-asso 98.9 3.5E-09 7.5E-14 85.5 7.8 57 1032-1088 1-61 (62)
32 cd00116 LRR_RI Leucine-rich re 98.9 6.6E-10 1.4E-14 125.0 4.0 158 106-273 21-205 (319)
33 KOG1259 Nischarin, modulator o 98.9 2.2E-10 4.9E-15 115.2 -0.6 182 84-278 212-416 (490)
34 KOG1259 Nischarin, modulator o 98.9 1.6E-10 3.5E-15 116.2 -1.8 125 85-212 283-410 (490)
35 COG4886 Leucine-rich repeat (L 98.8 3.8E-09 8.3E-14 122.3 4.9 186 91-292 98-286 (394)
36 COG4886 Leucine-rich repeat (L 98.7 1.2E-08 2.6E-13 118.1 5.3 149 132-294 115-266 (394)
37 KOG3207 Beta-tubulin folding c 98.6 5.5E-09 1.2E-13 111.4 0.2 187 84-277 119-317 (505)
38 COG2608 CopZ Copper chaperone 98.6 1.3E-07 2.7E-12 77.8 7.4 65 1028-1092 1-69 (71)
39 KOG3207 Beta-tubulin folding c 98.5 1.6E-08 3.5E-13 107.9 -1.0 181 82-273 142-338 (505)
40 PF13855 LRR_8: Leucine rich r 98.4 1.5E-07 3.3E-12 75.6 3.5 60 108-168 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.3 5.1E-08 1.1E-12 112.8 -2.8 172 86-276 72-247 (414)
42 KOG4656 Copper chaperone for s 98.3 2E-06 4.3E-11 81.6 8.2 69 1028-1096 6-74 (247)
43 PF13855 LRR_8: Leucine rich r 98.3 4.9E-07 1.1E-11 72.6 3.2 58 179-237 2-60 (61)
44 PLN03150 hypothetical protein; 98.2 2.5E-06 5.4E-11 103.4 9.5 105 134-239 419-528 (623)
45 KOG1859 Leucine-rich repeat pr 98.2 1.2E-08 2.6E-13 115.0 -10.4 174 84-273 107-291 (1096)
46 PRK15386 type III secretion pr 98.2 6.1E-06 1.3E-10 91.0 9.1 136 640-829 51-187 (426)
47 KOG2120 SCF ubiquitin ligase, 98.1 1E-07 2.2E-12 96.6 -4.7 84 179-273 186-272 (419)
48 PLN03150 hypothetical protein; 98.1 4.3E-06 9.3E-11 101.3 8.0 104 157-272 419-526 (623)
49 KOG2120 SCF ubiquitin ligase, 98.1 1.4E-07 3.1E-12 95.5 -3.9 63 405-479 311-373 (419)
50 KOG0531 Protein phosphatase 1, 98.1 5.2E-07 1.1E-11 104.5 -0.2 172 83-275 92-269 (414)
51 PRK15386 type III secretion pr 98.1 1.1E-05 2.3E-10 89.1 9.3 141 734-913 48-188 (426)
52 KOG1909 Ran GTPase-activating 98.0 7.5E-07 1.6E-11 93.0 -0.7 180 86-274 92-311 (382)
53 PF12799 LRR_4: Leucine Rich r 98.0 7.4E-06 1.6E-10 59.9 3.5 39 134-172 2-40 (44)
54 KOG1909 Ran GTPase-activating 98.0 1.5E-06 3.2E-11 90.9 -0.3 43 224-273 155-197 (382)
55 KOG3665 ZYG-1-like serine/thre 97.9 3.1E-06 6.7E-11 101.9 2.0 132 108-239 122-263 (699)
56 PF12799 LRR_4: Leucine Rich r 97.9 1.8E-05 3.9E-10 57.9 4.1 41 178-219 1-41 (44)
57 KOG1859 Leucine-rich repeat pr 97.8 3.9E-07 8.4E-12 103.2 -8.4 129 85-218 163-295 (1096)
58 KOG1644 U2-associated snRNP A' 97.8 3.4E-05 7.3E-10 74.6 5.2 118 89-209 22-148 (233)
59 KOG3665 ZYG-1-like serine/thre 97.7 1.6E-05 3.5E-10 95.8 3.3 135 132-273 121-262 (699)
60 KOG1644 U2-associated snRNP A' 97.6 8.5E-05 1.8E-09 72.0 6.0 103 85-188 41-150 (233)
61 KOG1947 Leucine rich repeat pr 97.6 2.2E-06 4.9E-11 102.6 -6.1 96 556-655 187-283 (482)
62 KOG4579 Leucine-rich repeat (L 97.6 5.4E-06 1.2E-10 74.6 -3.0 107 87-194 28-139 (177)
63 PLN02957 copper, zinc superoxi 97.5 0.00055 1.2E-08 71.8 9.8 72 1028-1099 5-76 (238)
64 KOG2982 Uncharacterized conser 97.4 8.8E-05 1.9E-09 75.8 2.6 84 177-272 70-157 (418)
65 KOG4579 Leucine-rich repeat (L 97.3 2.1E-05 4.5E-10 70.9 -2.1 111 108-220 27-141 (177)
66 COG5238 RNA1 Ran GTPase-activa 97.1 0.00029 6.2E-09 71.2 2.8 41 172-212 86-131 (388)
67 PRK10671 copA copper exporting 97.1 0.0012 2.6E-08 83.5 8.5 66 1027-1094 1-67 (834)
68 KOG1947 Leucine rich repeat pr 97.0 0.0001 2.2E-09 88.3 -1.6 137 713-854 187-330 (482)
69 KOG2123 Uncharacterized conser 96.8 6.4E-05 1.4E-09 76.1 -5.1 106 154-267 17-123 (388)
70 KOG2739 Leucine-rich acidic nu 96.6 0.00086 1.9E-08 68.3 1.9 82 131-212 63-154 (260)
71 KOG2982 Uncharacterized conser 96.6 0.00065 1.4E-08 69.7 0.7 103 88-191 47-159 (418)
72 KOG2739 Leucine-rich acidic nu 96.6 0.00089 1.9E-08 68.2 1.5 108 153-271 40-153 (260)
73 PF13306 LRR_5: Leucine rich r 96.1 0.014 3.1E-07 55.2 6.9 105 124-234 3-111 (129)
74 PF13306 LRR_5: Leucine rich r 96.1 0.015 3.2E-07 55.1 6.6 115 106-228 10-128 (129)
75 KOG2123 Uncharacterized conser 95.5 0.00076 1.7E-08 68.6 -4.7 100 132-232 18-123 (388)
76 COG5238 RNA1 Ran GTPase-activa 95.4 0.0069 1.5E-07 61.6 1.4 152 85-239 29-227 (388)
77 PF00560 LRR_1: Leucine Rich R 95.2 0.0069 1.5E-07 36.7 0.5 21 179-199 1-21 (22)
78 PF00560 LRR_1: Leucine Rich R 94.2 0.018 3.9E-07 34.9 0.6 21 134-154 1-21 (22)
79 COG2217 ZntA Cation transport 93.6 0.15 3.2E-06 61.9 7.4 63 1029-1092 2-69 (713)
80 KOG3864 Uncharacterized conser 93.2 0.011 2.4E-07 57.9 -2.4 65 556-627 124-188 (221)
81 TIGR00003 copper ion binding p 93.1 0.63 1.4E-05 36.7 8.4 59 1030-1088 3-65 (68)
82 KOG3864 Uncharacterized conser 92.5 0.029 6.4E-07 55.0 -0.6 67 377-445 122-188 (221)
83 PF13504 LRR_7: Leucine rich r 92.3 0.084 1.8E-06 29.6 1.4 16 179-194 2-17 (17)
84 KOG0473 Leucine-rich repeat pr 92.0 0.0049 1.1E-07 61.2 -6.5 84 152-237 38-122 (326)
85 PF13504 LRR_7: Leucine rich r 90.5 0.16 3.4E-06 28.5 1.2 16 134-149 2-17 (17)
86 KOG0473 Leucine-rich repeat pr 89.7 0.011 2.3E-07 58.9 -6.6 83 130-212 39-122 (326)
87 KOG0207 Cation transport ATPas 87.0 1.5 3.3E-05 53.1 7.4 67 1029-1095 146-216 (951)
88 smart00370 LRR Leucine-rich re 86.8 0.58 1.3E-05 29.6 2.2 19 178-196 2-20 (26)
89 smart00369 LRR_TYP Leucine-ric 86.8 0.58 1.3E-05 29.6 2.2 19 178-196 2-20 (26)
90 PF02680 DUF211: Uncharacteriz 86.2 2.9 6.2E-05 35.7 6.5 61 1028-1088 4-72 (95)
91 PRK10671 copA copper exporting 85.6 1.6 3.5E-05 55.7 7.2 62 1030-1091 100-162 (834)
92 smart00370 LRR Leucine-rich re 84.7 0.69 1.5E-05 29.2 1.8 23 200-223 1-23 (26)
93 smart00369 LRR_TYP Leucine-ric 84.7 0.69 1.5E-05 29.2 1.8 23 200-223 1-23 (26)
94 PRK11033 zntA zinc/cadmium/mer 76.7 5.3 0.00011 50.0 7.2 65 1026-1090 50-116 (741)
95 KOG4308 LRR-containing protein 75.1 0.043 9.4E-07 63.7 -10.9 178 87-273 88-302 (478)
96 smart00367 LRR_CC Leucine-rich 73.1 2.1 4.6E-05 27.1 1.3 17 819-835 2-18 (26)
97 COG1888 Uncharacterized protei 72.8 16 0.00036 30.7 6.5 61 1029-1089 6-75 (97)
98 KOG0207 Cation transport ATPas 67.8 9.8 0.00021 46.6 6.1 61 1036-1096 2-64 (951)
99 smart00365 LRR_SD22 Leucine-ri 60.5 6.7 0.00015 24.9 1.7 16 178-193 2-17 (26)
100 smart00364 LRR_BAC Leucine-ric 59.8 5.8 0.00013 25.1 1.2 17 179-195 3-19 (26)
101 TIGR02052 MerP mercuric transp 54.2 81 0.0018 26.6 8.4 59 1031-1089 25-87 (92)
102 KOG4308 LRR-containing protein 50.9 0.47 1E-05 55.3 -8.4 156 110-273 89-274 (478)
103 PF13516 LRR_6: Leucine Rich r 41.4 12 0.00026 22.9 0.6 14 178-191 2-15 (24)
104 smart00368 LRR_RI Leucine rich 39.1 25 0.00053 22.7 1.8 13 157-169 3-15 (28)
105 PF13732 DUF4162: Domain of un 37.3 76 0.0016 26.8 5.2 45 1050-1095 26-71 (84)
106 PRK10553 assembly protein for 36.1 1.2E+02 0.0027 26.0 6.1 52 1043-1094 19-76 (87)
107 PF03927 NapD: NapD protein; 33.9 1.9E+02 0.0041 24.4 6.8 43 1043-1086 17-60 (79)
108 PF05663 DUF809: Protein of un 32.2 40 0.00088 28.5 2.5 39 1047-1085 53-91 (138)
109 PF01883 DUF59: Domain of unkn 31.8 60 0.0013 26.6 3.5 33 1029-1061 34-72 (72)
110 PF04972 BON: BON domain; Int 27.9 47 0.001 26.4 2.2 35 1044-1079 2-39 (64)
111 PF13291 ACT_4: ACT domain; PD 26.5 1.6E+02 0.0034 24.6 5.3 34 1027-1060 46-79 (80)
112 cd04888 ACT_PheB-BS C-terminal 26.4 1.4E+02 0.003 24.4 5.0 34 1028-1061 40-74 (76)
113 cd00371 HMA Heavy-metal-associ 23.2 2.6E+02 0.0056 19.2 6.6 49 1036-1084 6-56 (63)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.6e-33 Score=360.88 Aligned_cols=512 Identities=18% Similarity=0.163 Sum_probs=297.0
Q ss_pred CCcCEEEeecCCCccC-CCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCc-cCCcccCCCCCCcEEE
Q 001201 86 KNCPTIFLHDCKHWEV-PEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPSLFHLPLNLQTLC 162 (1124)
Q Consensus 86 ~~lr~L~l~~n~i~~l-~~~~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~-~lp~~i~~l~~Lr~L~ 162 (1124)
.+++.|++++|.+... +..+ .+++|++|+|++|.+...+|..+|.++++||+|+|++|.+. .+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 4788999999987644 3333 78999999999999888899998889999999999999887 4453 5689999999
Q ss_pred ccCCCCCC-c-ccccCcccCcEEEccCCCCC-ccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCc
Q 001201 163 LDRCALGD-I-AIIGNLKKLEILSLVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 163 L~~~~l~~-l-~~i~~L~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~ 239 (1124)
|++|.+.. + ..++++.+|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC
Confidence 99999863 3 77999999999999999876 77889999999999999999855567766 899999999999998876
Q ss_pred cccccccccCCCcChhhhcCCCCCCEEEeecCCCc-ccCccccccccceEEEEeCCcccccCCCCCceEEEEeccccchh
Q 001201 240 WEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM-ILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVD 318 (1124)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~ 318 (1124)
...+..++++++|++|++++|.+. .+|..
T Consensus 226 -----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--------------------------------------- 255 (968)
T PLN00113 226 -----------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSS--------------------------------------- 255 (968)
T ss_pred -----------CcCChhHhcCCCCCEEECcCceeccccChh---------------------------------------
Confidence 456778899999999999988753 22222
Q ss_pred HHHHhhcccceeeccccCCccccccccccccccccceeeeccCCCeeEEeeCCcccccccccccceeecccccccccccc
Q 001201 319 EVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICL 398 (1124)
Q Consensus 319 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 398 (1124)
++.+++|+.|+++++.........+ ..+++|++|++++|.....++ .....+++|+.|++.++.-....
T Consensus 256 --l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p-----~~~~~l~~L~~L~l~~n~~~~~~-- 324 (968)
T PLN00113 256 --LGNLKNLQYLFLYQNKLSGPIPPSI--FSLQKLISLDLSDNSLSGEIP-----ELVIQLQNLEILHLFSNNFTGKI-- 324 (968)
T ss_pred --HhCCCCCCEEECcCCeeeccCchhH--hhccCcCEEECcCCeeccCCC-----hhHcCCCCCcEEECCCCccCCcC--
Confidence 2334445555554432221111122 345556666665554211110 11223444555554443211111
Q ss_pred cccCccccCCccEEEEccCCCcCcccchhhhhccCcccEEecccccccchhccccccCCcccCcccccccCccCEEeecC
Q 001201 399 GQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKF 478 (1124)
Q Consensus 399 ~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 478 (1124)
+.....+++|+.|++++|.-...+| ..+..+++|+.|+++++.-...++. ....+++|+.|++.+
T Consensus 325 -~~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~~~~L~~L~Ls~n~l~~~~p~------------~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 325 -PVALTSLPRLQVLQLWSNKFSGEIP--KNLGKHNNLTVLDLSTNNLTGEIPE------------GLCSSGNLFKLILFS 389 (968)
T ss_pred -ChhHhcCCCCCEEECcCCCCcCcCC--hHHhCCCCCcEEECCCCeeEeeCCh------------hHhCcCCCCEEECcC
Confidence 0112245556666666543222222 2345556666666665332222220 112344455555554
Q ss_pred CCcccccccccccchhcccccceecccCCCceeecccccCcccccccccccccccceeeecccccccccccCcccccCCC
Q 001201 479 LPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQN 558 (1124)
Q Consensus 479 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~ 558 (1124)
++-...++. .+.. +++|+.|++++|.+....+..+. .+++
T Consensus 390 n~l~~~~p~----~~~~----------------------------------~~~L~~L~L~~n~l~~~~p~~~~--~l~~ 429 (968)
T PLN00113 390 NSLEGEIPK----SLGA----------------------------------CRSLRRVRLQDNSFSGELPSEFT--KLPL 429 (968)
T ss_pred CEecccCCH----HHhC----------------------------------CCCCCEEECcCCEeeeECChhHh--cCCC
Confidence 432222221 1223 44455555555543332222222 2455
Q ss_pred ccEEEEecCCCccccCcchhhhhccCCCEEEEeccccccceecccccccccceeecCccceeccccCcccceecCCCccC
Q 001201 559 LTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTS 638 (1124)
Q Consensus 559 L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~~~~~~~~ 638 (1124)
|+.|+++++ .++...+ ..+..+++|+.|++++|.-...++... ..++|+.|++++|.-...++....
T Consensus 430 L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~~~---------~~~~L~~L~ls~n~l~~~~~~~~~-- 496 (968)
T PLN00113 430 VYFLDISNN-NLQGRIN-SRKWDMPSLQMLSLARNKFFGGLPDSF---------GSKRLENLDLSRNQFSGAVPRKLG-- 496 (968)
T ss_pred CCEEECcCC-cccCccC-hhhccCCCCcEEECcCceeeeecCccc---------ccccceEEECcCCccCCccChhhh--
Confidence 555555553 3333322 223345555555555555322222211 234555555555543333322211
Q ss_pred CCCcccEEEEecCCcceeecccccccccccCCccccccccceeeeeeecCCceEEeeccccccccccccCCccccccccE
Q 001201 639 KWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKN 718 (1124)
Q Consensus 639 ~l~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 718 (1124)
.+++|+.|++++|.-...+|... ..+++|++|+|++|.+....+..+ ..+++|+.
T Consensus 497 ~l~~L~~L~Ls~N~l~~~~p~~~-----------------------~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~ 551 (968)
T PLN00113 497 SLSELMQLKLSENKLSGEIPDEL-----------------------SSCKKLVSLDLSHNQLSGQIPASF--SEMPVLSQ 551 (968)
T ss_pred hhhccCEEECcCCcceeeCChHH-----------------------cCccCCCEEECCCCcccccCChhH--hCcccCCE
Confidence 35667777776664333343221 345667777777776654433332 23566777
Q ss_pred EEEeeCCCc-ccchHHHhhcCCCcEEEEEcceeeEEcc
Q 001201 719 LEVVNDESE-NFRIGFLERFHNLEKLELRWSSYKEIFS 755 (1124)
Q Consensus 719 L~i~~c~~l-~~~~~~l~~l~~L~~L~i~c~~l~~l~~ 755 (1124)
|++++|... .+| ..+.++++|+.|+++.+.+...++
T Consensus 552 L~Ls~N~l~~~~p-~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 552 LDLSQNQLSGEIP-KNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred EECCCCcccccCC-hhHhcCcccCEEeccCCcceeeCC
Confidence 777777765 344 345567777777777545544333
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.3e-32 Score=353.45 Aligned_cols=517 Identities=18% Similarity=0.148 Sum_probs=295.7
Q ss_pred CCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCc-cCCcccC-CCCCCcEEEccCCCCCCcccccCcccCcEEEc
Q 001201 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPSLFH-LPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (1124)
Q Consensus 108 ~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~-~lp~~i~-~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L 185 (1124)
.+++.|+|++|.+...++ ..|..+++|++|+|++|.+. .+|..+. .+++||+|+|++|.+......+.+.+|++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~L 147 (968)
T PLN00113 69 SRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDL 147 (968)
T ss_pred CcEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEEC
Confidence 579999999998886665 45789999999999999987 7887654 99999999999999875544467899999999
Q ss_pred cCCCCC-ccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCC
Q 001201 186 VDSNIE-QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLT 264 (1124)
Q Consensus 186 s~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~ 264 (1124)
++|.+. .+|..++++.+|++|++++|.....+|.. ++++++|++|++++|.+. ...+..++++++|+
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L~ 215 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLV-----------GQIPRELGQMKSLK 215 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCc-----------CcCChHHcCcCCcc
Confidence 999987 77999999999999999999845577776 899999999999999876 45678899999999
Q ss_pred EEEeecCCCcccCccccccccceEEEEeCCcccccCCCCCceEEEEeccccchhHHHHhhcccceeeccccCCccccccc
Q 001201 265 TLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYD 344 (1124)
Q Consensus 265 ~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~ 344 (1124)
.|++++|.+.. .++..++.+++|+.|+++++.........
T Consensus 216 ~L~L~~n~l~~----------------------------------------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 255 (968)
T PLN00113 216 WIYLGYNNLSG----------------------------------------EIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255 (968)
T ss_pred EEECcCCccCC----------------------------------------cCChhHhcCCCCCEEECcCceeccccChh
Confidence 99999887532 11112334556666666654332222222
Q ss_pred cccccccccceeeeccCCCeeEEeeCCcccccccccccceeecccccccccccccccCccccCCccEEEEccCCCcCccc
Q 001201 345 LDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIF 424 (1124)
Q Consensus 345 ~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~ 424 (1124)
+ +.+++|++|++++|.....++ .....+++|+.|++++|. +....
T Consensus 256 l--~~l~~L~~L~L~~n~l~~~~p--------------------------------~~l~~l~~L~~L~Ls~n~-l~~~~ 300 (968)
T PLN00113 256 L--GNLKNLQYLFLYQNKLSGPIP--------------------------------PSIFSLQKLISLDLSDNS-LSGEI 300 (968)
T ss_pred H--hCCCCCCEEECcCCeeeccCc--------------------------------hhHhhccCcCEEECcCCe-eccCC
Confidence 2 556667777776664211110 011234555555555543 22221
Q ss_pred chhhhhccCcccEEecccccccchhccccccCCcccCcccccccCccCEEeecCCCcccccccccccchhcccccceecc
Q 001201 425 SFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELST 504 (1124)
Q Consensus 425 ~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l 504 (1124)
+ ..+.++++|++|+++++.-...++ .....+++|+.|++.++.-...++. .+..
T Consensus 301 p-~~~~~l~~L~~L~l~~n~~~~~~~------------~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~--------- 354 (968)
T PLN00113 301 P-ELVIQLQNLEILHLFSNNFTGKIP------------VALTSLPRLQVLQLWSNKFSGEIPK----NLGK--------- 354 (968)
T ss_pred C-hhHcCCCCCcEEECCCCccCCcCC------------hhHhcCCCCCEEECcCCCCcCcCCh----HHhC---------
Confidence 1 234556666666666543222222 0123455555555555432222221 1222
Q ss_pred cCCCceeecccccCcccccccccccccccceeeecccccccccccCcccccCCCccEEEEecCCCccccCcchhhhhccC
Q 001201 505 HTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQ 584 (1124)
Q Consensus 505 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~ 584 (1124)
+++|+.|++++|.+....+..+. .+++|+.|++++| .+....|. .+..+++
T Consensus 355 -------------------------~~~L~~L~Ls~n~l~~~~p~~~~--~~~~L~~L~l~~n-~l~~~~p~-~~~~~~~ 405 (968)
T PLN00113 355 -------------------------HNNLTVLDLSTNNLTGEIPEGLC--SSGNLFKLILFSN-SLEGEIPK-SLGACRS 405 (968)
T ss_pred -------------------------CCCCcEEECCCCeeEeeCChhHh--CcCCCCEEECcCC-EecccCCH-HHhCCCC
Confidence 33444444444443322221111 1345555555553 22222222 2344555
Q ss_pred CCEEEEeccccccceecccccccccceeecCccceeccccCcccceecCCCccCCCCcccEEEEecCCcceeeccccccc
Q 001201 585 LEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRF 664 (1124)
Q Consensus 585 L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~ 664 (1124)
|+.|++++|.--..++... ..+++|+.|+++++.-...++... ..+++|+.|++++|.-...+|..
T Consensus 406 L~~L~L~~n~l~~~~p~~~--------~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~---- 471 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEF--------TKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDS---- 471 (968)
T ss_pred CCEEECcCCEeeeECChhH--------hcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcCceeeeecCcc----
Confidence 5555555554111221111 034455555555443222222111 13667777777776544444311
Q ss_pred ccccCCccccccccceeeeeeecCCceEEeeccccccccccccCCccccccccEEEEeeCCCcccchHHHhhcCCCcEEE
Q 001201 665 QEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLE 744 (1124)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~l~~l~~L~~L~ 744 (1124)
...++|+.|++++|.+....+..+ ..+++|+.|++++|.........+..+++|+.|+
T Consensus 472 --------------------~~~~~L~~L~ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 529 (968)
T PLN00113 472 --------------------FGSKRLENLDLSRNQFSGAVPRKL--GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529 (968)
T ss_pred --------------------cccccceEEECcCCccCCccChhh--hhhhccCEEECcCCcceeeCChHHcCccCCCEEE
Confidence 123566777777766654332222 2355666666666665522223445566666666
Q ss_pred EEcceeeEEccChhhhhhhhhccccceEeccCcccccccccCCCCcccccCcccEEEEeccCCccccc
Q 001201 745 LRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLV 812 (1124)
Q Consensus 745 i~c~~l~~l~~~~~~~~~~~~l~~L~~L~l~~~~~L~~i~~~~~~~~~~l~~L~~L~i~~c~~l~~l~ 812 (1124)
|+.+.+....+. .+..+++|+.|+++++.-...++. ....+++|+.|++++|.-...+|
T Consensus 530 Ls~N~l~~~~p~-----~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 530 LSHNQLSGQIPA-----SFSEMPVLSQLDLSQNQLSGEIPK----NLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CCCCcccccCCh-----hHhCcccCCEEECCCCcccccCCh----hHhcCcccCEEeccCCcceeeCC
Confidence 665555543332 234455666666665543333321 23445556666666655444443
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.96 E-value=3e-28 Score=313.66 Aligned_cols=417 Identities=24% Similarity=0.294 Sum_probs=243.7
Q ss_pred HHHHhhcCcccccCCCCcEEechhHHHHHHHHHccCCceEEecCCcccCCCccc---------CCCCcCEEEeecCCCcc
Q 001201 30 VHKLKDYCLLLDGPTEDWIRMHDLVREVAISIASRDRHVFMLRNDIQIEWPVAD---------MLKNCPTIFLHDCKHWE 100 (1124)
Q Consensus 30 ~~~L~~~~l~~~~~~~~~~~mHDlv~dla~~i~~~e~~~~~~~~~~~~~~~~~~---------~~~~lr~L~l~~n~i~~ 100 (1124)
++.|+++||++..+ +.+.|||++|+||+.+++++.. ..+.+...|...+ ..++++.+++....+.+
T Consensus 472 l~~L~~ksLi~~~~--~~~~MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~ 546 (1153)
T PLN03210 472 LKNLVDKSLIHVRE--DIVEMHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDE 546 (1153)
T ss_pred hHHHHhcCCEEEcC--CeEEhhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccce
Confidence 88999999998754 6899999999999999988741 1222333333211 12344444443332221
Q ss_pred CCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCc-------cCCcccCCCC-CCcEEEccCCCCCCcc
Q 001201 101 VPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-------SLPSLFHLPL-NLQTLCLDRCALGDIA 172 (1124)
Q Consensus 101 l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~-------~lp~~i~~l~-~Lr~L~L~~~~l~~l~ 172 (1124)
..+...+|.+|++|++|.+..+... .+|..+..++ +||+|++.++.+..++
T Consensus 547 ---------------------~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP 605 (1153)
T PLN03210 547 ---------------------LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMP 605 (1153)
T ss_pred ---------------------eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCC
Confidence 1244455666777777666544211 3455555553 4777777776666663
Q ss_pred cccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCc
Q 001201 173 IIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNA 252 (1124)
Q Consensus 173 ~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~ 252 (1124)
......+|++|++++|.+..+|.++..+++|++|++++|..+..+|. ++.+++|++|++++|... ..
T Consensus 606 ~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L-----------~~ 672 (1153)
T PLN03210 606 SNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL-----------VE 672 (1153)
T ss_pred CcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc-----------cc
Confidence 33355677777777777777776667777777777776665666664 566777777777665433 23
Q ss_pred ChhhhcCCCCCCEEEeecCC-CcccCccccccccceEEEEeCCcccccCCCCCceEEEEeccccchhHHHHhhcccceee
Q 001201 253 SLQELKLLSHLTTLEIQICD-AMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELY 331 (1124)
Q Consensus 253 ~~~~l~~l~~L~~L~l~~~~-~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~ 331 (1124)
.+..++.+++|+.|++++|. +..+|..+. +++|+.|+
T Consensus 673 lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~------------------------------------------l~sL~~L~ 710 (1153)
T PLN03210 673 LPSSIQYLNKLEDLDMSRCENLEILPTGIN------------------------------------------LKSLYRLN 710 (1153)
T ss_pred cchhhhccCCCCEEeCCCCCCcCccCCcCC------------------------------------------CCCCCEEe
Confidence 44556666777777776653 333333221 22344444
Q ss_pred ccccCCccccccccccccccccceeeeccCCCeeEEeeCCcccccccccccceeeccccccccccc----ccccCccccC
Q 001201 332 LDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKIC----LGQLRAESFY 407 (1124)
Q Consensus 332 L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~----~~~~~~~~~~ 407 (1124)
+++|...... + ....+|++|++.++. +..++ ....+++|+.|.+.++.....+. ........++
T Consensus 711 Lsgc~~L~~~-p----~~~~nL~~L~L~~n~-i~~lP------~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 711 LSGCSRLKSF-P----DISTNISWLDLDETA-IEEFP------SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCCCcccc-c----cccCCcCeeecCCCc-ccccc------ccccccccccccccccchhhccccccccchhhhhccc
Confidence 4443322211 1 112355555555554 22221 11234555555555433211100 0000112345
Q ss_pred CccEEEEccCCCcCcccchhhhhccCcccEEecccccccchhccccccCCcccCcccccccCccCEEeecCCCccccccc
Q 001201 408 KLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYS 487 (1124)
Q Consensus 408 ~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 487 (1124)
+|+.|++++|+.+..+|. .+.++++|+.|++++|..++.++. ...+++|+.|++++|..+..++.
T Consensus 779 sL~~L~Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~-------------~~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPS--SIQNLHKLEHLEIENCINLETLPT-------------GINLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred cchheeCCCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeCC-------------CCCccccCEEECCCCCccccccc
Confidence 677777777776666654 256677777777777777666651 12456666666666665554432
Q ss_pred ccccchhcccccceecccCCCceeecccccCcccccccccccccccceeeecccccccccccCcccccCCCccEEEEecC
Q 001201 488 QVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGC 567 (1124)
Q Consensus 488 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C 567 (1124)
..++|+.|++++|.++.++.. + ..+++|+.|++++|
T Consensus 844 -----------------------------------------~~~nL~~L~Ls~n~i~~iP~s-i--~~l~~L~~L~L~~C 879 (1153)
T PLN03210 844 -----------------------------------------ISTNISDLNLSRTGIEEVPWW-I--EKFSNLSFLDMNGC 879 (1153)
T ss_pred -----------------------------------------cccccCEeECCCCCCccChHH-H--hcCCCCCEEECCCC
Confidence 134677777777776655332 2 24789999999999
Q ss_pred CCccccCcchhhhhccCCCEEEEecccccccee
Q 001201 568 EKLKYLFPSSMIRNFVQLEHLEICYCSSLESIV 600 (1124)
Q Consensus 568 ~~L~~l~~~~~~~~l~~L~~L~l~~C~~l~~i~ 600 (1124)
++++.+++ . ...+++|+.+++++|.+++.+.
T Consensus 880 ~~L~~l~~-~-~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 880 NNLQRVSL-N-ISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCcCccCc-c-cccccCCCeeecCCCccccccc
Confidence 99999743 3 5678999999999999887653
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-28 Score=299.20 Aligned_cols=237 Identities=25% Similarity=0.343 Sum_probs=181.2
Q ss_pred chhhhhhcccCcCCcccHHHHHHHHHHHHHHHhhcCcccccC---CCCcEEechhHHHHHHHHHc-----cCCceEEecC
Q 001201 2 DLLKYGTGLHIFKGTYTMQETRDRLYALVHKLKDYCLLLDGP---TEDWIRMHDLVREVAISIAS-----RDRHVFMLRN 73 (1124)
Q Consensus 2 ~Li~~wi~~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~---~~~~~~mHDlv~dla~~i~~-----~e~~~~~~~~ 73 (1124)
+||.|||||||+++....+.+.+.+++++.+|++++|++..+ +..+|+|||+|||||.++|+ +|.+++ ..+
T Consensus 432 ~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv-~~~ 510 (889)
T KOG4658|consen 432 KLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIV-SDG 510 (889)
T ss_pred HHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEE-ECC
Confidence 589999999999874444445555555599999999999765 45899999999999999999 666333 222
Q ss_pred CcccCCCcccCCCCcCEEEeecCCCccCCCCCCCCCccEEEecCCCC-CCCCChhhhcCCCCCcEEEeecC-CCccCCcc
Q 001201 74 DIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDH-SIKIPNHVFAGMSNLRGLALSNM-QFLSLPSL 151 (1124)
Q Consensus 74 ~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~-~~~~~~~~f~~l~~Lr~L~Ls~~-~i~~lp~~ 151 (1124)
.+....+....+...|++++.+|.+..++....+++|++|.+.+|.. ...++..+|..|+.||+|||++| .+..+|+.
T Consensus 511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 511 VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred cCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 24455566667789999999999999999988889999999999873 44788889999999999999987 46788888
Q ss_pred cCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEE
Q 001201 152 FHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDL 231 (1124)
Q Consensus 152 i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L 231 (1124)
|+.|.|||||+|+++ .+.+||.++++|++|.+|++..+..+..+| +++..|.+||+|
T Consensus 591 I~~Li~LryL~L~~t----------------------~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDT----------------------GISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVL 647 (889)
T ss_pred HhhhhhhhcccccCC----------------------CccccchHHHHHHhhheecccccccccccc-chhhhcccccEE
Confidence 888888777776665 466788888888888888888777566664 335668888888
Q ss_pred EeecccCccccccccccCCCcChhhhcCCCCCCEEEeecC
Q 001201 232 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQIC 271 (1124)
Q Consensus 232 ~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 271 (1124)
.+...... .+.....++.++.+|+.+.+...
T Consensus 648 ~l~~s~~~---------~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 648 RLPRSALS---------NDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred Eeeccccc---------cchhhHHhhhcccchhhheeecc
Confidence 87665422 12344666677777776666443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.3e-25 Score=240.03 Aligned_cols=376 Identities=19% Similarity=0.246 Sum_probs=249.6
Q ss_pred cCCCCcCEEEeecCCCccCCCCC----CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCC
Q 001201 83 DMLKNCPTIFLHDCKHWEVPEGL----EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNL 158 (1124)
Q Consensus 83 ~~~~~lr~L~l~~n~i~~l~~~~----~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~L 158 (1124)
...-..+-++.+++.++.+.... -.+..++|++++|.+. .+...+|.++++|+.+++..|.++.+|...+...||
T Consensus 49 ~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl 127 (873)
T KOG4194|consen 49 TCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHL 127 (873)
T ss_pred cCCCCceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhcccccccccce
Confidence 44556778888888887764332 3467788999999887 677788999999999999999999999877778899
Q ss_pred cEEEccCCCCCCc--ccccCcccCcEEEccCCCCCccch-hhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeec
Q 001201 159 QTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGN 235 (1124)
Q Consensus 159 r~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~ 235 (1124)
+.|+|.+|.|..+ +.+..+..||.||||.|.|.++|. .|..=.++++|+|++|. ++.+..+.|..+.+|-+|.+++
T Consensus 128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeeccc
Confidence 9999999999988 789999999999999999999874 67777899999999998 9999888889999999999999
Q ss_pred ccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEEeCCcccccCCCCCceEEEEecccc
Q 001201 236 TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTS 315 (1124)
Q Consensus 236 ~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~ 315 (1124)
|.++ ...+..|++|++|+.|++..|++...
T Consensus 207 Nrit-----------tLp~r~Fk~L~~L~~LdLnrN~iriv--------------------------------------- 236 (873)
T KOG4194|consen 207 NRIT-----------TLPQRSFKRLPKLESLDLNRNRIRIV--------------------------------------- 236 (873)
T ss_pred Cccc-----------ccCHHHhhhcchhhhhhccccceeee---------------------------------------
Confidence 9887 34456788888888888877764211
Q ss_pred chhHHHHhhcccceeeccccCCccccccccccccccccceeeeccCCCeeEEeeCCcccccccccccceeeccccccccc
Q 001201 316 NVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEK 395 (1124)
Q Consensus 316 ~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 395 (1124)
.++.+.++++|+.|.+.+|. +..+.++ .+-.+.++++|++..
T Consensus 237 ---------------------------e~ltFqgL~Sl~nlklqrN~-I~kL~DG----~Fy~l~kme~l~L~~------ 278 (873)
T KOG4194|consen 237 ---------------------------EGLTFQGLPSLQNLKLQRND-ISKLDDG----AFYGLEKMEHLNLET------ 278 (873)
T ss_pred ---------------------------hhhhhcCchhhhhhhhhhcC-cccccCc----ceeeecccceeeccc------
Confidence 11223556666666666654 2222111 112223333333332
Q ss_pred ccccccCccccCCccEEEEccCCCcCcccchhhhhccCcccEEecccccccchhccccccCCcccCcccccccCccCEEe
Q 001201 396 ICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLT 475 (1124)
Q Consensus 396 ~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~ 475 (1124)
+++..+.. .++-++.+|+.|+++. +.++.+.. +.-...++|+.|+
T Consensus 279 ----------------------N~l~~vn~-g~lfgLt~L~~L~lS~-NaI~rih~-----------d~WsftqkL~~Ld 323 (873)
T KOG4194|consen 279 ----------------------NRLQAVNE-GWLFGLTSLEQLDLSY-NAIQRIHI-----------DSWSFTQKLKELD 323 (873)
T ss_pred ----------------------chhhhhhc-ccccccchhhhhccch-hhhheeec-----------chhhhcccceeEe
Confidence 22222221 2233444444444444 33333321 0112334555555
Q ss_pred ecCCCcccccccccccchhcccccceecccCCCceeecccccCcccccccccccccccceeeeccccccc-ccccCcccc
Q 001201 476 LKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEK-IWCNQLAAV 554 (1124)
Q Consensus 476 l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~ 554 (1124)
++. ..++.++. +++..+..|++|.++.+..-.+. -+....+.+|++|++++|.+.- +.....+..
T Consensus 324 Ls~-N~i~~l~~---~sf~~L~~Le~LnLs~Nsi~~l~----------e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 324 LSS-NRITRLDE---GSFRVLSQLEELNLSHNSIDHLA----------EGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred ccc-cccccCCh---hHHHHHHHhhhhcccccchHHHH----------hhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 554 23344433 34555566666666665422111 0122346778888888887432 222222223
Q ss_pred cCCCccEEEEecCCCccccCcchhhhhccCCCEEEEecccccccee
Q 001201 555 YSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIV 600 (1124)
Q Consensus 555 ~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~l~~i~ 600 (1124)
++++|++|.+.+ ++++.+ +.-.+.++.+||+|++.++. |.+|-
T Consensus 390 gl~~LrkL~l~g-Nqlk~I-~krAfsgl~~LE~LdL~~Na-iaSIq 432 (873)
T KOG4194|consen 390 GLPSLRKLRLTG-NQLKSI-PKRAFSGLEALEHLDLGDNA-IASIQ 432 (873)
T ss_pred cchhhhheeecC-ceeeec-chhhhccCcccceecCCCCc-ceeec
Confidence 488899999988 788887 55667888999999998888 66664
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=3.6e-24 Score=230.91 Aligned_cols=340 Identities=19% Similarity=0.221 Sum_probs=224.9
Q ss_pred CCCcCEEEeecCCCccCCCC--CCCCCccEEEecCCCCCCCCChhhhcC-CCCCcEEEeecCCCccC-CcccCCCCCCcE
Q 001201 85 LKNCPTIFLHDCKHWEVPEG--LEYPQLEFFCMSPRDHSIKIPNHVFAG-MSNLRGLALSNMQFLSL-PSLFHLPLNLQT 160 (1124)
Q Consensus 85 ~~~lr~L~l~~n~i~~l~~~--~~~~~L~~L~L~~n~~~~~~~~~~f~~-l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~ 160 (1124)
+...+.|++++|.+.++... .++++|+.+++.+|.+. .||. |++ ..+|..|+|.+|.|..+ .+.+..++.||+
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--FGHESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--ccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 44566778888877766533 27778888888777766 5765 333 44577788888777766 345777777888
Q ss_pred EEccCCCCCCc--ccccCcccCcEEEccCCCCCccc-hhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeeccc
Q 001201 161 LCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (1124)
Q Consensus 161 L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 237 (1124)
|||+.|.|..+ .++..-.++++|+|++|.|+.+- ..|..+.+|-+|.|+.|. ++.+|...|.+|.+|+.|++..|.
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccc
Confidence 88887777766 66777777788888888777774 357777777778887777 777777767777788888777777
Q ss_pred CccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccc--cccccceEEEEeCCc----ccccCCCCCceEEEEe
Q 001201 238 VKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIGDE----WDWSGNYKNKRVLKLK 311 (1124)
Q Consensus 238 i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~l~l~~~~~----~~~~~~~~~l~~l~l~ 311 (1124)
+. ...--.|.+|++|+.|.+..|.+..+..++ .+.+++.+++..+.+ -.|...+..++.|+++
T Consensus 233 ir-----------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 233 IR-----------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS 301 (873)
T ss_pred ee-----------eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccc
Confidence 65 112345677777777777777777777766 667777777765554 2455556666666665
Q ss_pred ccc-cchhH-HHHhhcccceeeccccCCccccccccccccccccceeeeccCCCeeEEeeCCcccccccccccceeeccc
Q 001201 312 LYT-SNVDE-VIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHN 389 (1124)
Q Consensus 312 ~~~-~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~ 389 (1124)
.+. ..+.. ....+++|++|+|+.+... .++.-.+..+..|++|.|++|. +.++-+ ..+..+.+|++|++.+
T Consensus 302 ~NaI~rih~d~WsftqkL~~LdLs~N~i~--~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e----~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 302 YNAIQRIHIDSWSFTQKLKELDLSSNRIT--RLDEGSFRVLSQLEELNLSHNS-IDHLAE----GAFVGLSSLHKLDLRS 374 (873)
T ss_pred hhhhheeecchhhhcccceeEeccccccc--cCChhHHHHHHHhhhhcccccc-hHHHHh----hHHHHhhhhhhhcCcC
Confidence 543 22222 3455778888888764332 1333334667788888888876 332211 2355667788888776
Q ss_pred cccccc-ccccccCccccCCccEEEEccCCCcCcccchhhhhccCcccEEecccccccchhc
Q 001201 390 LIHLEK-ICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIF 450 (1124)
Q Consensus 390 ~~~l~~-~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~L~~c~~l~~i~ 450 (1124)
. .+.. +-.+......+++|+.|++.+ ++++.++. ..+.++++|++|++.+ +.+..+-
T Consensus 375 N-~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~-NaiaSIq 432 (873)
T KOG4194|consen 375 N-ELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGD-NAIASIQ 432 (873)
T ss_pred C-eEEEEEecchhhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCC-Ccceeec
Confidence 2 2221 111222334578888888888 77888766 5678888888888877 4444443
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=4.5e-25 Score=251.08 Aligned_cols=482 Identities=20% Similarity=0.236 Sum_probs=282.0
Q ss_pred EEEeecCCCccCCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCC
Q 001201 90 TIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCAL 168 (1124)
Q Consensus 90 ~L~l~~n~i~~l~~~~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l 168 (1124)
++++++++++-+|..+ .-..+..|++..|.+. ..|-.+..+.-+|+.||+++|.+..+|..+..+.+|+.|+++.|.|
T Consensus 2 ~vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 2 HVDASDEQLELIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred CcccccccCcccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhH
Confidence 4567777787788766 4444888888888655 5666666666679999999999999999999999999999999998
Q ss_pred CCc-ccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccc
Q 001201 169 GDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNV 247 (1124)
Q Consensus 169 ~~l-~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~ 247 (1124)
... .+++++.+|++|+|.+|.+..+|.++..+++|++|++++|. +..+|.- +..++.+..+.+++| ..
T Consensus 81 ~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N-~~-------- 149 (1081)
T KOG0618|consen 81 RSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNN-EK-------- 149 (1081)
T ss_pred hhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcc-hh--------
Confidence 877 88899999999999999999999999999999999999998 8888875 788888888888887 22
Q ss_pred cCCCcChhhhcCCCCCCEEEeecCCCc-ccCccccccccceEEEEeCCcccccCCCCCceEEEEeccccchh-HHHHhhc
Q 001201 248 GRSNASLQELKLLSHLTTLEIQICDAM-ILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVD-EVIMQLK 325 (1124)
Q Consensus 248 ~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~-~~~~~l~ 325 (1124)
+..++... .+.+++..+.+. .+..++ ..++. .++++.+ .+. .....++
T Consensus 150 ------~~~lg~~~-ik~~~l~~n~l~~~~~~~i--~~l~~-------------------~ldLr~N--~~~~~dls~~~ 199 (1081)
T KOG0618|consen 150 ------IQRLGQTS-IKKLDLRLNVLGGSFLIDI--YNLTH-------------------QLDLRYN--EMEVLDLSNLA 199 (1081)
T ss_pred ------hhhhcccc-chhhhhhhhhcccchhcch--hhhhe-------------------eeecccc--hhhhhhhhhcc
Confidence 22233322 455555544431 111111 01111 0111111 000 0111223
Q ss_pred ccceeeccccCCccccccccccccccccceeeeccCCCeeEEeeCCcccccccccccceeecccccccccccccccCccc
Q 001201 326 GIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAES 405 (1124)
Q Consensus 326 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 405 (1124)
+|+.|+...... ..+. -.-++|+.|+.+.|+-.+ + .......+|+.++++. .+++.+. ...+.
T Consensus 200 ~l~~l~c~rn~l-----s~l~-~~g~~l~~L~a~~n~l~~-~------~~~p~p~nl~~~dis~-n~l~~lp---~wi~~ 262 (1081)
T KOG0618|consen 200 NLEVLHCERNQL-----SELE-ISGPSLTALYADHNPLTT-L------DVHPVPLNLQYLDISH-NNLSNLP---EWIGA 262 (1081)
T ss_pred chhhhhhhhccc-----ceEE-ecCcchheeeeccCccee-e------ccccccccceeeecch-hhhhcch---HHHHh
Confidence 333332221110 0000 122344444444444221 1 0011122344444433 1222210 11223
Q ss_pred cCCccEEEEccCCCcCcccchhhhhccCcccEEecccccccchhccccccCCcccCcccccccCccCEEeecCCCccccc
Q 001201 406 FYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSF 485 (1124)
Q Consensus 406 ~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 485 (1124)
+++|+.+.+.+ +.+..+|. ......+|+.|.+.. +.++.+++ ....+.+|++|++... ++..+
T Consensus 263 ~~nle~l~~n~-N~l~~lp~--ri~~~~~L~~l~~~~-nel~yip~------------~le~~~sL~tLdL~~N-~L~~l 325 (1081)
T KOG0618|consen 263 CANLEALNANH-NRLVALPL--RISRITSLVSLSAAY-NELEYIPP------------FLEGLKSLRTLDLQSN-NLPSL 325 (1081)
T ss_pred cccceEecccc-hhHHhhHH--HHhhhhhHHHHHhhh-hhhhhCCC------------cccccceeeeeeehhc-ccccc
Confidence 44444444443 33333322 122233444444433 23333331 2234777788877653 44444
Q ss_pred ccccccchhc-ccccceecccCCCceeecccccCcccccccccccccccceeeecccccccccccCcccccCCCccEEEE
Q 001201 486 YSQVKTSAAS-QTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIV 564 (1124)
Q Consensus 486 ~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l 564 (1124)
+.. .+.. ..+|+.|+.+.++.-..+ . .+...++.|+.|.+.+|.+++-....+ .++.+||.|++
T Consensus 326 p~~---~l~v~~~~l~~ln~s~n~l~~lp---------~-~~e~~~~~Lq~LylanN~Ltd~c~p~l--~~~~hLKVLhL 390 (1081)
T KOG0618|consen 326 PDN---FLAVLNASLNTLNVSSNKLSTLP---------S-YEENNHAALQELYLANNHLTDSCFPVL--VNFKHLKVLHL 390 (1081)
T ss_pred chH---HHhhhhHHHHHHhhhhccccccc---------c-ccchhhHHHHHHHHhcCcccccchhhh--ccccceeeeee
Confidence 431 1111 122444444444322222 1 112246789999999999665432233 35899999999
Q ss_pred ecCCCccccCcchhhhhccCCCEEEEeccccccceecccccccccceeecCccceeccccCcccceecCCCccCCCCccc
Q 001201 565 HGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLK 644 (1124)
Q Consensus 565 ~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~ 644 (1124)
++ +.|..+ |++.+.++..||+|+++++. ++.++.... .++.|++|...+ +.+..+|+-. .++.|+
T Consensus 391 sy-NrL~~f-pas~~~kle~LeeL~LSGNk-L~~Lp~tva--------~~~~L~tL~ahs-N~l~~fPe~~---~l~qL~ 455 (1081)
T KOG0618|consen 391 SY-NRLNSF-PASKLRKLEELEELNLSGNK-LTTLPDTVA--------NLGRLHTLRAHS-NQLLSFPELA---QLPQLK 455 (1081)
T ss_pred cc-cccccC-CHHHHhchHHhHHHhcccch-hhhhhHHHH--------hhhhhHHHhhcC-Cceeechhhh---hcCcce
Confidence 99 888884 88889999999999999998 888874322 567777776544 4566777322 478888
Q ss_pred EEEEecCCcceeecccccccccccCCccccccccceeeeeeec-CCceEEeecccccc
Q 001201 645 KLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVT-SKLEELKLSGKDIA 701 (1124)
Q Consensus 645 ~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~ 701 (1124)
.+|+ .|++|+...... ... ++|++|+++||.-.
T Consensus 456 ~lDl-S~N~L~~~~l~~-----------------------~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 456 VLDL-SCNNLSEVTLPE-----------------------ALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred EEec-ccchhhhhhhhh-----------------------hCCCcccceeeccCCccc
Confidence 8888 567776442110 122 78888888887753
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=6.1e-26 Score=234.14 Aligned_cols=256 Identities=24% Similarity=0.325 Sum_probs=143.1
Q ss_pred CcCEEEeecCCCccCCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccC
Q 001201 87 NCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDR 165 (1124)
Q Consensus 87 ~lr~L~l~~n~i~~l~~~~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~ 165 (1124)
.+..+.+++|.+..+.+.. ++..|.+|.+.+|... .+|+.+ +.+..+..|+.+.|.+..+|+.++.+..|+.|+.++
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence 3444555566555554444 5566666666666554 455444 555556666666666666666666666666666666
Q ss_pred CCCCCc-ccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccccc
Q 001201 166 CALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (1124)
Q Consensus 166 ~~l~~l-~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~ 244 (1124)
|.+..+ ++++.+..|+.|+..+|++.++|.+++.+.+|..|++.+|. ++.+|++.+ +++.|++|+...|.+.
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i-~m~~L~~ld~~~N~L~----- 196 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHI-AMKRLKHLDCNSNLLE----- 196 (565)
T ss_pred cceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHH-HHHHHHhcccchhhhh-----
Confidence 665554 55666666666666666666666666666666666666665 555555532 3566666655544432
Q ss_pred ccccCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEEeCCc---c-cccCCCCCceEEEEeccc-cchhH
Q 001201 245 LNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDE---W-DWSGNYKNKRVLKLKLYT-SNVDE 319 (1124)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~---~-~~~~~~~~l~~l~l~~~~-~~l~~ 319 (1124)
..+++++.+.+|..|++..|++..+|.--....|..+.+..+.+ + +.......+..++++.+. ..+|.
T Consensus 197 -------tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd 269 (565)
T KOG0472|consen 197 -------TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD 269 (565)
T ss_pred -------cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch
Confidence 34555566666666666666655555222334444444433332 1 112233444455554443 55555
Q ss_pred HHHhhcccceeeccccCCccccccccccccccccceeeeccCC
Q 001201 320 VIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (1124)
Q Consensus 320 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 362 (1124)
-...+.+|+.|+++++. ++.....+ +.+ .|+.|.+.||+
T Consensus 270 e~clLrsL~rLDlSNN~-is~Lp~sL--gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNND-ISSLPYSL--GNL-HLKFLALEGNP 308 (565)
T ss_pred HHHHhhhhhhhcccCCc-cccCCccc--ccc-eeeehhhcCCc
Confidence 56667778888887643 23333344 566 78888888887
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.8e-20 Score=241.82 Aligned_cols=319 Identities=18% Similarity=0.287 Sum_probs=205.8
Q ss_pred CCCCcCEEEeecCCC-------ccCCCCC-CC-CCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCC
Q 001201 84 MLKNCPTIFLHDCKH-------WEVPEGL-EY-PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHL 154 (1124)
Q Consensus 84 ~~~~lr~L~l~~n~i-------~~l~~~~-~~-~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~ 154 (1124)
.+++++.|.+..+.. ..+|.++ .+ .+||.|.+.++.+. .+|..+ ...+|+.|+++++.+..+|..+..
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccccccccccc
Confidence 477889988876532 1355555 33 57999999988765 688664 578999999999999999999999
Q ss_pred CCCCcEEEccCCC-CCCcccccCcccCcEEEccCC-CCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEE
Q 001201 155 PLNLQTLCLDRCA-LGDIAIIGNLKKLEILSLVDS-NIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLY 232 (1124)
Q Consensus 155 l~~Lr~L~L~~~~-l~~l~~i~~L~~L~~L~Ls~~-~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~ 232 (1124)
+++|++|+|+++. +..++.++.+++|++|++++| .+..+|..++++.+|++|++++|..+..+|.. + ++++|++|+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~ 710 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLN 710 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEe
Confidence 9999999999876 677778899999999999998 57899999999999999999999889999986 3 899999999
Q ss_pred eecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEEeCCcccccCCCCCceEEEEec
Q 001201 233 MGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKL 312 (1124)
Q Consensus 233 l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~ 312 (1124)
+++|... ...+ . ...+|+.|+++++.+..+|..+.+.+|..|.+............
T Consensus 711 Lsgc~~L-----------~~~p-~--~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~---------- 766 (1153)
T PLN03210 711 LSGCSRL-----------KSFP-D--ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERV---------- 766 (1153)
T ss_pred CCCCCCc-----------cccc-c--ccCCcCeeecCCCccccccccccccccccccccccchhhccccc----------
Confidence 9988643 1111 1 24578999999999888887766666666654321110000000
Q ss_pred cccch-hHHHHhhcccceeeccccCCccccccccccccccccceeeeccCCCeeEEeeCCcccccccccccceeeccccc
Q 001201 313 YTSNV-DEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLI 391 (1124)
Q Consensus 313 ~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~ 391 (1124)
..+ +......++|+.|+++++......+..+ +.+++|+.|++++|..++.++.. ..+++|+.|++++|.
T Consensus 767 --~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~------~~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 767 --QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTG------INLESLESLDLSGCS 836 (1153)
T ss_pred --cccchhhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCC------CCccccCEEECCCCC
Confidence 000 0012223455556655554443333322 45555555555555554444321 134455555555554
Q ss_pred ccccccccccCccccCCccEEEEccCCCcCcccchhhhhccCcccEEecccccccchhc
Q 001201 392 HLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIF 450 (1124)
Q Consensus 392 ~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~L~~c~~l~~i~ 450 (1124)
.+..+. ...++|+.|++++ +.++.+|. .+..+++|+.|++++|+++..++
T Consensus 837 ~L~~~p------~~~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 837 RLRTFP------DISTNISDLNLSR-TGIEEVPW--WIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred cccccc------ccccccCEeECCC-CCCccChH--HHhcCCCCCEEECCCCCCcCccC
Confidence 443321 1224455555554 33444432 24445555555555555555443
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=7.9e-24 Score=241.09 Aligned_cols=465 Identities=23% Similarity=0.241 Sum_probs=317.3
Q ss_pred cCEEEeecCCCccCCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccC
Q 001201 88 CPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDR 165 (1124)
Q Consensus 88 lr~L~l~~n~i~~l~~~~--~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~ 165 (1124)
+.+|++..|.+-..|-.. +.-+|++|++++|.+. .+|..+ ..+.+|+.|+++.|.|..+|.+++++.+|++|+|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheecc
Confidence 677778777766555222 4445999999999877 677665 778999999999999999999999999999999999
Q ss_pred CCCCCc-ccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccccc
Q 001201 166 CALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (1124)
Q Consensus 166 ~~l~~l-~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~ 244 (1124)
|.+..+ .++..+++|++||+++|.+..+|.-+..++.+..++.++|..+..++.. + .+++++..+.+.
T Consensus 101 n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~--~----ik~~~l~~n~l~----- 169 (1081)
T KOG0618|consen 101 NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT--S----IKKLDLRLNVLG----- 169 (1081)
T ss_pred chhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccc--c----chhhhhhhhhcc-----
Confidence 998877 8999999999999999999999999999999999999999656666542 1 677777776655
Q ss_pred ccccCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEEeCCcccccCCCCCceEEEEeccccchhHHHHhh
Q 001201 245 LNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQL 324 (1124)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l 324 (1124)
+..+.++..+.+ .|++..|.+..+ ....+.+|+.+....+. +..+.+. -
T Consensus 170 ------~~~~~~i~~l~~--~ldLr~N~~~~~-dls~~~~l~~l~c~rn~----------ls~l~~~------------g 218 (1081)
T KOG0618|consen 170 ------GSFLIDIYNLTH--QLDLRYNEMEVL-DLSNLANLEVLHCERNQ----------LSELEIS------------G 218 (1081)
T ss_pred ------cchhcchhhhhe--eeecccchhhhh-hhhhccchhhhhhhhcc----------cceEEec------------C
Confidence 445566666666 688888876511 11133444443322111 1222222 2
Q ss_pred cccceeeccccCCccccccccccccccccceeeeccCCCeeEEeeCCcccccccccccceeecccccccccccccccCcc
Q 001201 325 KGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAE 404 (1124)
Q Consensus 325 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 404 (1124)
++++.|+.+.+...+.... ....+|++++++.+. +..++ +| ...+++|+.+...+ +++..+ +....
T Consensus 219 ~~l~~L~a~~n~l~~~~~~----p~p~nl~~~dis~n~-l~~lp---~w--i~~~~nle~l~~n~-N~l~~l---p~ri~ 284 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVH----PVPLNLQYLDISHNN-LSNLP---EW--IGACANLEALNANH-NRLVAL---PLRIS 284 (1081)
T ss_pred cchheeeeccCcceeeccc----cccccceeeecchhh-hhcch---HH--HHhcccceEecccc-hhHHhh---HHHHh
Confidence 3566666655543321111 234579999999886 33332 33 45677888888876 455443 22234
Q ss_pred ccCCccEEEEccCCCcCcccchhhhhccCcccEEecccccccchhccccccCCcccCcccccccCccCEEeecCCCcccc
Q 001201 405 SFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTS 484 (1124)
Q Consensus 405 ~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 484 (1124)
...+|+.|.+.. +.+.++|+. ..++.+|++|++.. +++...+..+-. ..-.+|+.|..+.. .+..
T Consensus 285 ~~~~L~~l~~~~-nel~yip~~--le~~~sL~tLdL~~-N~L~~lp~~~l~----------v~~~~l~~ln~s~n-~l~~ 349 (1081)
T KOG0618|consen 285 RITSLVSLSAAY-NELEYIPPF--LEGLKSLRTLDLQS-NNLPSLPDNFLA----------VLNASLNTLNVSSN-KLST 349 (1081)
T ss_pred hhhhHHHHHhhh-hhhhhCCCc--ccccceeeeeeehh-ccccccchHHHh----------hhhHHHHHHhhhhc-cccc
Confidence 667888888888 458888763 56799999999988 677766621100 01112333333321 2222
Q ss_pred cccccccchhcccccceecccCCCceeecccccCcccccccccccccccceeeecccccccccccCcccccCCCccEEEE
Q 001201 485 FYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIV 564 (1124)
Q Consensus 485 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l 564 (1124)
.+. ......+.|+.|.+.++..- +. .+..+.++..|+.|++++|.+..+....+.. ++.|+.|++
T Consensus 350 lp~---~~e~~~~~Lq~LylanN~Lt----d~------c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k--le~LeeL~L 414 (1081)
T KOG0618|consen 350 LPS---YEENNHAALQELYLANNHLT----DS------CFPVLVNFKHLKVLHLSYNRLNSFPASKLRK--LEELEELNL 414 (1081)
T ss_pred ccc---ccchhhHHHHHHHHhcCccc----cc------chhhhccccceeeeeecccccccCCHHHHhc--hHHhHHHhc
Confidence 221 12345778999999988522 11 2334557899999999999988877666654 889999999
Q ss_pred ecCCCccccCcchhhhhccCCCEEEEeccccccceecccccccccceeecCccceeccccCcccceecCCCccCCCCccc
Q 001201 565 HGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLK 644 (1124)
Q Consensus 565 ~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~ 644 (1124)
++ ++|+.+ |. -...+..|+.|...++. |..+|... .++.|+.++++ |++|......... ..|.|+
T Consensus 415 SG-NkL~~L-p~-tva~~~~L~tL~ahsN~-l~~fPe~~---------~l~qL~~lDlS-~N~L~~~~l~~~~-p~p~Lk 479 (1081)
T KOG0618|consen 415 SG-NKLTTL-PD-TVANLGRLHTLRAHSNQ-LLSFPELA---------QLPQLKVLDLS-CNNLSEVTLPEAL-PSPNLK 479 (1081)
T ss_pred cc-chhhhh-hH-HHHhhhhhHHHhhcCCc-eeechhhh---------hcCcceEEecc-cchhhhhhhhhhC-CCcccc
Confidence 99 899998 43 35678899998887766 76666321 68899999988 5666655433332 238999
Q ss_pred EEEEecCCcce
Q 001201 645 KLEVYGCDKVK 655 (1124)
Q Consensus 645 ~L~i~~C~~L~ 655 (1124)
.|++++...+.
T Consensus 480 yLdlSGN~~l~ 490 (1081)
T KOG0618|consen 480 YLDLSGNTRLV 490 (1081)
T ss_pred eeeccCCcccc
Confidence 99999987643
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.4e-23 Score=227.34 Aligned_cols=382 Identities=19% Similarity=0.227 Sum_probs=232.4
Q ss_pred CCCccEEEecCCCCC-CCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCc-ccccCcccCcEEE
Q 001201 107 YPQLEFFCMSPRDHS-IKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILS 184 (1124)
Q Consensus 107 ~~~L~~L~L~~n~~~-~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~ 184 (1124)
++-.|-.++++|+++ ..+|.++ ..|..++-|.|....+..+|+.++.|.+|++|.+++|++..+ ..++.|+.||.++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 455666777777776 4566554 778888888888888888888888888888888888887766 7778888888888
Q ss_pred ccCCCCC--ccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCC
Q 001201 185 LVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSH 262 (1124)
Q Consensus 185 Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~ 262 (1124)
+..|+++ .+|..|-+|..|..|||++|+ ++++|.+ +..-+++-+|++++|+|.- ..-.-+-+|+.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~-LE~AKn~iVLNLS~N~Iet-----------IPn~lfinLtD 151 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN-LEYAKNSIVLNLSYNNIET-----------IPNSLFINLTD 151 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhh-hhhcchh-hhhhcCcEEEEcccCcccc-----------CCchHHHhhHh
Confidence 8888765 678888888888888888887 8888877 7777888888888887761 11123456777
Q ss_pred CCEEEeecCCCcccCccccccccceEEEEeCCcccccCCCCCceEEEEeccccchhHHHHhhcccceeeccccCCccccc
Q 001201 263 LTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVL 342 (1124)
Q Consensus 263 L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~ 342 (1124)
|-.|+++.|++..+|+.+ ..+.+|+.|.|++++...-.+
T Consensus 152 LLfLDLS~NrLe~LPPQ~-----------------------------------------RRL~~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEMLPPQI-----------------------------------------RRLSMLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred HhhhccccchhhhcCHHH-----------------------------------------HHHhhhhhhhcCCChhhHHHH
Confidence 777788777776666543 112233333333321100000
Q ss_pred cccccccccccceeeeccCCCeeEEeeCCcccccccccccceeecccccccccccccccCccccCCccEEEEccCCCcCc
Q 001201 343 YDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKN 422 (1124)
Q Consensus 343 ~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~ 422 (1124)
..+ ..+.+|..|++++.+.. +..+ +.+...+.+|..++++. +.+..
T Consensus 191 rQL--PsmtsL~vLhms~TqRT----------------------------l~N~---Ptsld~l~NL~dvDlS~-N~Lp~ 236 (1255)
T KOG0444|consen 191 RQL--PSMTSLSVLHMSNTQRT----------------------------LDNI---PTSLDDLHNLRDVDLSE-NNLPI 236 (1255)
T ss_pred hcC--ccchhhhhhhcccccch----------------------------hhcC---CCchhhhhhhhhccccc-cCCCc
Confidence 000 11222333333322200 0001 11223556666666654 55665
Q ss_pred ccchhhhhccCcccEEecccccccchhccccccCCcccCcccccccCccCEEeecCCCcccccccccccchhccccccee
Q 001201 423 IFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKEL 502 (1124)
Q Consensus 423 l~~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L 502 (1124)
+|.+ +-.+++|+.|++++ +.++++.. . .....+|+.|
T Consensus 237 vPec--ly~l~~LrrLNLS~-N~iteL~~------------~----------------------------~~~W~~lEtL 273 (1255)
T KOG0444|consen 237 VPEC--LYKLRNLRRLNLSG-NKITELNM------------T----------------------------EGEWENLETL 273 (1255)
T ss_pred chHH--HhhhhhhheeccCc-Cceeeeec------------c----------------------------HHHHhhhhhh
Confidence 5542 55667777777766 45554431 1 2233444555
Q ss_pred cccCCCceeecccccCcccccccccccccccceeeecccc--cccccccCcccccCCCccEEEEecCCCccccCcchhhh
Q 001201 503 STHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAIS--TEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIR 580 (1124)
Q Consensus 503 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~ 580 (1124)
+++.+.....|.. ...++.|+.|.+.+|. ...++.+. +.+..|+.+..++ ++|+-+ |. .+.
T Consensus 274 NlSrNQLt~LP~a-----------vcKL~kL~kLy~n~NkL~FeGiPSGI---GKL~~Levf~aan-N~LElV-PE-glc 336 (1255)
T KOG0444|consen 274 NLSRNQLTVLPDA-----------VCKLTKLTKLYANNNKLTFEGIPSGI---GKLIQLEVFHAAN-NKLELV-PE-GLC 336 (1255)
T ss_pred ccccchhccchHH-----------HhhhHHHHHHHhccCcccccCCccch---hhhhhhHHHHhhc-cccccC-ch-hhh
Confidence 5555543333322 2246667777776666 23333322 2367788888887 777765 54 477
Q ss_pred hccCCCEEEEeccccccceecccccccccceeecCccceeccccCcccceecCCCccCCCCcccEEEE
Q 001201 581 NFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEV 648 (1124)
Q Consensus 581 ~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~i 648 (1124)
.|..|+.|.++.+. +-.+|... ..++.|+.|++...++|.--|..... -++|+.-+|
T Consensus 337 RC~kL~kL~L~~Nr-LiTLPeaI--------HlL~~l~vLDlreNpnLVMPPKP~da--~~~lefYNI 393 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHNR-LITLPEAI--------HLLPDLKVLDLRENPNLVMPPKPNDA--RKKLEFYNI 393 (1255)
T ss_pred hhHHHHHhcccccc-eeechhhh--------hhcCCcceeeccCCcCccCCCCcchh--hhcceeeec
Confidence 88899999988666 66666532 26788999999998888765443322 144554444
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=5.2e-25 Score=227.35 Aligned_cols=194 Identities=24% Similarity=0.364 Sum_probs=109.6
Q ss_pred CCCcCEEEeecCCCccCCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEc
Q 001201 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (1124)
Q Consensus 85 ~~~lr~L~l~~n~i~~l~~~~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L 163 (1124)
+..+..+.+++|.+.++|+.+ .+..++.|+.++|.+. .+|..+ ..+..|+.|+.+.|.+..+|++++.+..|..|+.
T Consensus 67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDA 144 (565)
T ss_pred ccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhhhc
Confidence 334445555555555555444 4444455555555444 344433 3444455555555555555444555545555544
Q ss_pred cCCCCCCc-ccccC-----------------------cccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCc
Q 001201 164 DRCALGDI-AIIGN-----------------------LKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP 219 (1124)
Q Consensus 164 ~~~~l~~l-~~i~~-----------------------L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 219 (1124)
.+|.+..+ .++++ ++.|++||...|.++.+|..++.|.+|..|++..|. +..+|.
T Consensus 145 ~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPe 223 (565)
T KOG0472|consen 145 TNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLPE 223 (565)
T ss_pred cccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCCC
Confidence 44444433 44444 455555555555555555555555555555555554 555553
Q ss_pred cccCCCCCccEEEeecccCccccccccccCCCcChhh-hcCCCCCCEEEeecCCCcccCccc-cccccceEEEEeCCc
Q 001201 220 NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQE-LKLLSHLTTLEIQICDAMILPKGL-FSKKLERYKIFIGDE 295 (1124)
Q Consensus 220 ~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~l~l~~~~~ 295 (1124)
|.++..|.+|+++.|++. ..+++ ++++++|..||+..|++.++|.++ .+.+|++++++.+.+
T Consensus 224 --f~gcs~L~Elh~g~N~i~------------~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 224 --FPGCSLLKELHVGENQIE------------MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI 287 (565)
T ss_pred --CCccHHHHHHHhcccHHH------------hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc
Confidence 455555555555555443 22333 458999999999999999999998 778899999887766
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=1.2e-22 Score=220.11 Aligned_cols=239 Identities=22% Similarity=0.316 Sum_probs=185.6
Q ss_pred CCCCcCEEEeecCCCccCCCCC-CCCCccEEEecCCCCC-CCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEE
Q 001201 84 MLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHS-IKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTL 161 (1124)
Q Consensus 84 ~~~~lr~L~l~~n~i~~l~~~~-~~~~L~~L~L~~n~~~-~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L 161 (1124)
.+.++.||++.+|++..+...+ .++.||.+++..|++. ..+|.++| .++.|.+||||.|++.+.|..+..-+++-+|
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 4788999999999998887666 8999999999888763 46999987 6999999999999999999999999999999
Q ss_pred EccCCCCCCc--ccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCc
Q 001201 162 CLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 162 ~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~ 239 (1124)
+|++|.|..+ .-+-+|..|-+||||+|.+..+|+.+.+|.+|++|+|++|. +..+.-.-+-.+++|++|.+++.+-+
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccch
Confidence 9999999988 66889999999999999999999999999999999999997 44333222456788999999988755
Q ss_pred cccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccc-cccccceEEEEeCCcccc---cCCCCCceEEEEeccc-
Q 001201 240 WEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKKLERYKIFIGDEWDW---SGNYKNKRVLKLKLYT- 314 (1124)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~l~l~~~~~~~~---~~~~~~l~~l~l~~~~- 314 (1124)
. ...+..+..+.+|+.++++.|++..+|.-+ .+.+|++|+++.+.+-.. .+...++..|.++.+.
T Consensus 211 l----------~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 211 L----------DNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL 280 (1255)
T ss_pred h----------hcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh
Confidence 2 345778888899999999999988888776 778888888876665211 1112233344443333
Q ss_pred cchhHHHHhhcccceeeccc
Q 001201 315 SNVDEVIMQLKGIEELYLDE 334 (1124)
Q Consensus 315 ~~l~~~~~~l~~L~~L~L~~ 334 (1124)
+.+|.....++.|+.|.+.+
T Consensus 281 t~LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 281 TVLPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred ccchHHHhhhHHHHHHHhcc
Confidence 44444444445555554433
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.2e-18 Score=157.83 Aligned_cols=167 Identities=26% Similarity=0.373 Sum_probs=143.9
Q ss_pred CccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCc-ccccC
Q 001201 98 HWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGN 176 (1124)
Q Consensus 98 i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~ 176 (1124)
+.+++..+++++++.|-|++|.+. .+|+++ ..+++|++|++++|+|+++|.+++.++.||.|++.-|++..+ ..||.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 345566667888888888888887 577776 789999999999999999999999999999999998887766 88999
Q ss_pred cccCcEEEccCCCCC--ccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcCh
Q 001201 177 LKKLEILSLVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASL 254 (1124)
Q Consensus 177 L~~L~~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~ 254 (1124)
++.|++||+.+|++. .+|..|..|..|+.|+|+.|. ..-+|.+ +++|++||.|.+.+|.+. ..+
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll------------~lp 166 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL------------SLP 166 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh------------hCc
Confidence 999999999999776 789888889999999999998 8889988 899999999999888765 467
Q ss_pred hhhcCCCCCCEEEeecCCCcccCccc
Q 001201 255 QELKLLSHLTTLEIQICDAMILPKGL 280 (1124)
Q Consensus 255 ~~l~~l~~L~~L~l~~~~~~~l~~~~ 280 (1124)
.+++.++.|+.|.+.+|++..+|+++
T Consensus 167 keig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecChhh
Confidence 88999999999999999998888875
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=4.7e-17 Score=168.98 Aligned_cols=143 Identities=24% Similarity=0.324 Sum_probs=109.9
Q ss_pred EeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccC-CCCC
Q 001201 92 FLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDR-CALG 169 (1124)
Q Consensus 92 ~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~-~~l~ 169 (1124)
+-++..+.++|..+. +....++|..|.+. .+|+.+|+.+++||.||||.|.|+.+ |++|..+..|-.|-+-+ |+|+
T Consensus 52 dCr~~GL~eVP~~LP-~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLP-PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EccCCCcccCcccCC-CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 334445556665542 34566778888777 68888888888888888888888887 78888888877766665 7788
Q ss_pred Cc--ccccCcccCcEEEccCCCCCccc-hhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeeccc
Q 001201 170 DI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (1124)
Q Consensus 170 ~l--~~i~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 237 (1124)
++ ..|++|..|+-|.+.-|.+.-++ ..+..|.+|+.|.+..|. +..++.+.+..+..++++.+..|.
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 77 77888888888888888887664 568888888888888887 888888778888888888877665
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=5.6e-17 Score=148.65 Aligned_cols=152 Identities=24% Similarity=0.357 Sum_probs=141.3
Q ss_pred CCCCcCEEEeecCCCccCCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEE
Q 001201 84 MLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (1124)
Q Consensus 84 ~~~~lr~L~l~~n~i~~l~~~~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~ 162 (1124)
.+..+++|.+++|.+..+|+.+ .+.+|++|++++|.+. ++|.++ +.+++||.|+++-|.+..+|..|+.++-|++||
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 4667889999999999999988 8999999999999987 788776 899999999999999999999999999999999
Q ss_pred ccCCCCC--Cc-ccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCc
Q 001201 163 LDRCALG--DI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 163 L~~~~l~--~l-~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~ 239 (1124)
|.+|.+. .+ ..|..+..|+.|+++.|.++-+|..+++|++||.|.+..|. +-++|.+ ++.|+.|++|++.+|.+.
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccceee
Confidence 9999976 34 77888999999999999999999999999999999999998 8899998 899999999999999876
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=3e-13 Score=161.52 Aligned_cols=158 Identities=22% Similarity=0.271 Sum_probs=115.9
Q ss_pred CcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCC
Q 001201 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (1124)
Q Consensus 87 ~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~ 166 (1124)
+-..|+++.+.+..+|..+. ++|+.|++.+|.+. .+|. ..++|++|++++|.++.+|.. .++|+.|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 45578888888888887663 47888999888877 5763 357889999999988888753 467888899888
Q ss_pred CCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccccccc
Q 001201 167 ALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLN 246 (1124)
Q Consensus 167 ~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~ 246 (1124)
.+..+..+ ..+|+.|++++|.++.+|.. +.+|++|++++|. +..+|.. . .+|+.|++++|.+..
T Consensus 273 ~L~~Lp~l--p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p---~~L~~L~Ls~N~L~~------ 336 (788)
T PRK15387 273 PLTHLPAL--PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-P---SELCKLWAYNNQLTS------ 336 (788)
T ss_pred chhhhhhc--hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC-c---ccccccccccCcccc------
Confidence 87766332 35688888999988888853 4678889998887 7777752 2 357778888877651
Q ss_pred ccCCCcChhhhcCCCCCCEEEeecCCCcccCc
Q 001201 247 VGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (1124)
Q Consensus 247 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 278 (1124)
+..+ ..+|+.|++++|.+..+|.
T Consensus 337 -------LP~l--p~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 337 -------LPTL--PSGLQELSVSDNQLASLPT 359 (788)
T ss_pred -------cccc--ccccceEecCCCccCCCCC
Confidence 1111 1368888888888776664
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.47 E-value=8.5e-13 Score=157.70 Aligned_cols=251 Identities=18% Similarity=0.094 Sum_probs=169.7
Q ss_pred eEEecCCcccCCCcccCCCCcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCcc
Q 001201 68 VFMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS 147 (1124)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~ 147 (1124)
...+........|. ....+++.|++.+|.+..+|.. .++|++|++++|.+. .+|. ..++|+.|++++|.+..
T Consensus 205 ~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~ 276 (788)
T PRK15387 205 VLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTH 276 (788)
T ss_pred EEEcCCCCCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC-cccC----cccccceeeccCCchhh
Confidence 34455556555554 4556899999999999999864 589999999999887 6774 24689999999999998
Q ss_pred CCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCC
Q 001201 148 LPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSR 227 (1124)
Q Consensus 148 lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~ 227 (1124)
+|..+ .+|+.|++++|.++.+.. .+++|++|++++|.++.+|... .+|+.|++++|. +..+|.- ..+
T Consensus 277 Lp~lp---~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~l----p~~ 343 (788)
T PRK15387 277 LPALP---SGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPTL----PSG 343 (788)
T ss_pred hhhch---hhcCEEECcCCccccccc--cccccceeECCCCccccCCCCc---ccccccccccCc-ccccccc----ccc
Confidence 88633 678899999999887743 2478999999999999888633 457788899988 8888852 257
Q ss_pred ccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEEeCCcccccCCCCCceE
Q 001201 228 LEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRV 307 (1124)
Q Consensus 228 L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~ 307 (1124)
|++|++++|.+.. .+ .+ ..+|+.|++++|.+..+|... .+|+.+++..+.+-
T Consensus 344 Lq~LdLS~N~Ls~------------LP-~l--p~~L~~L~Ls~N~L~~LP~l~--~~L~~LdLs~N~Lt----------- 395 (788)
T PRK15387 344 LQELSVSDNQLAS------------LP-TL--PSELYKLWAYNNRLTSLPALP--SGLKELIVSGNRLT----------- 395 (788)
T ss_pred cceEecCCCccCC------------CC-CC--CcccceehhhccccccCcccc--cccceEEecCCccc-----------
Confidence 8999999998761 11 11 246778888888887776532 45666666544431
Q ss_pred EEEeccccchhHHHHhhcccceeeccccCCccccccccccccccccceeeeccCCCeeEEeeCCcccccccccccceeec
Q 001201 308 LKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVL 387 (1124)
Q Consensus 308 l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l 387 (1124)
.++. ..++|+.|+++++.. .. ++. .+.+|+.|++++|. ++.+++ ....+++|+.|++
T Consensus 396 --------~LP~---l~s~L~~LdLS~N~L-ss-IP~----l~~~L~~L~Ls~Nq-Lt~LP~-----sl~~L~~L~~LdL 452 (788)
T PRK15387 396 --------SLPV---LPSELKELMVSGNRL-TS-LPM----LPSGLLSLSVYRNQ-LTRLPE-----SLIHLSSETTVNL 452 (788)
T ss_pred --------CCCC---cccCCCEEEccCCcC-CC-CCc----chhhhhhhhhccCc-ccccCh-----HHhhccCCCeEEC
Confidence 1111 123566666665432 22 121 12356666776665 333322 2344566667776
Q ss_pred ccc
Q 001201 388 HNL 390 (1124)
Q Consensus 388 ~~~ 390 (1124)
+++
T Consensus 453 s~N 455 (788)
T PRK15387 453 EGN 455 (788)
T ss_pred CCC
Confidence 663
No 19
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.46 E-value=2.5e-13 Score=112.38 Aligned_cols=68 Identities=34% Similarity=0.471 Sum_probs=62.2
Q ss_pred cceeEEEEEEeecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHHhCC-ceEEE
Q 001201 1026 TRTKKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLC-ATELV 1093 (1124)
Q Consensus 1026 ~~~~~~~~~~~~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~~d~~~~~~~l~k~~~-~~~~~ 1093 (1124)
..+++.+++|+|||+||+.+|++.+.+++||+++.+|.++++|||.|++||..++++++|++. +++.+
T Consensus 2 ~~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~ 70 (73)
T KOG1603|consen 2 PPIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELW 70 (73)
T ss_pred CCccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEe
Confidence 356789999999999999999999999999999999999999999999999999999999884 44443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=1.6e-12 Score=156.56 Aligned_cols=178 Identities=20% Similarity=0.332 Sum_probs=116.5
Q ss_pred CCCCcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEc
Q 001201 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (1124)
Q Consensus 84 ~~~~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L 163 (1124)
.++.++.|++++|.+..+|.... ++|++|++++|.+. .+|..++ .+|+.|+|++|.+..+|..+. .+|++|++
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRITELPERLP--SALQSLDL 269 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccCcCChhHh--CCCCEEEC
Confidence 45677788888888777776542 57888888877766 5665543 367788888888777776654 46788888
Q ss_pred cCCCCCCc-ccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccc
Q 001201 164 DRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (1124)
Q Consensus 164 ~~~~l~~l-~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~ 242 (1124)
++|.+..+ ..+. .+|++|++++|.++.+|..+. .+|++|++++|. +..+|.. + ..+|+.|++++|.+.
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~~L~Ls~N~Lt--- 338 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLKTLEAGENALT--- 338 (754)
T ss_pred cCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--cccceeccccCCccc---
Confidence 87777765 3333 477888888887777776543 467777777776 7777654 2 256777777777665
Q ss_pred ccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEE
Q 001201 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIF 291 (1124)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~ 291 (1124)
..+..+ .++|+.|++++|.+..+|..+ ..+|+.|++.
T Consensus 339 ---------~LP~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs 375 (754)
T PRK15370 339 ---------SLPASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVS 375 (754)
T ss_pred ---------cCChhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECC
Confidence 112222 246777788777776655433 2344444443
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.41 E-value=1.7e-14 Score=150.29 Aligned_cols=141 Identities=24% Similarity=0.309 Sum_probs=124.5
Q ss_pred EecCCcccCCCcccCCCCcCEEEeecCCCccCCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeec-CCCc
Q 001201 70 MLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSN-MQFL 146 (1124)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~--~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~-~~i~ 146 (1124)
..++.++.+.| .+.+.....|.|..|+|..+|+++ .+++||.|+|++|.++ .|.+++|.+++.|..|-+.+ |+|+
T Consensus 52 dCr~~GL~eVP-~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 52 DCRGKGLTEVP-ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EccCCCcccCc-ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchh
Confidence 34556666666 467888999999999999999987 8999999999999998 78889999999987776665 8999
Q ss_pred cCCc-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCccch-hhhCCCCccEEEecCCC
Q 001201 147 SLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCS 212 (1124)
Q Consensus 147 ~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~ 212 (1124)
++|. .|+.|..|+.|.+..|.+..+ ..+..|++|..|.+..|.+..++. .|..+..++++.+..|.
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 9986 599999999999999999877 889999999999999999999987 79999999999988776
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=1.2e-12 Score=157.80 Aligned_cols=119 Identities=18% Similarity=0.321 Sum_probs=53.0
Q ss_pred cCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCC
Q 001201 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCA 167 (1124)
Q Consensus 88 lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~ 167 (1124)
...|+++++.+..+|..+ .+.|+.|++++|.+. .+|..++ .+|++|++++|.+..+|..+. .+|+.|+|++|.
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 344555555554444433 134555555555444 3444332 245555555555554444332 244555555554
Q ss_pred CCCc-ccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccC
Q 001201 168 LGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIP 218 (1124)
Q Consensus 168 l~~l-~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp 218 (1124)
+..+ ..+. .+|++|++++|++..+|..+. .+|++|++++|. +..+|
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP 299 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLP 299 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCc
Confidence 4433 2221 244444554444444444332 244444444444 44444
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.25 E-value=5.3e-12 Score=154.59 Aligned_cols=128 Identities=25% Similarity=0.344 Sum_probs=104.2
Q ss_pred CCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCC--CCCc--ccccCcccCcEEEccCC-CCCccchhhhCCCCccE
Q 001201 131 GMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCA--LGDI--AIIGNLKKLEILSLVDS-NIEQLPEEMAQLTQLRL 205 (1124)
Q Consensus 131 ~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~--l~~l--~~i~~L~~L~~L~Ls~~-~i~~lp~~i~~L~~L~~ 205 (1124)
+....|.+.+-+|.+..++.+..+ +.|++|-+.+|. +..+ ..|..++.|++|||++| .+.+||..|+.|.+||+
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred chhheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 456778888888888877766544 378888888886 5555 44888999999999987 68899999999999999
Q ss_pred EEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCC
Q 001201 206 FDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (1124)
Q Consensus 206 L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (1124)
|+++++. +..+|.+ +++|..|.+|++..+... ...+..+..|++|++|.+....
T Consensus 600 L~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l-----------~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 600 LDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRL-----------ESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccCCC-ccccchH-HHHHHhhheecccccccc-----------ccccchhhhcccccEEEeeccc
Confidence 9999998 9999999 899999999999877643 2234556669999999987655
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.15 E-value=4.4e-13 Score=141.17 Aligned_cols=93 Identities=18% Similarity=0.196 Sum_probs=52.2
Q ss_pred CccEEEEecCCCccccCcchhhhhccCCCEEEEeccccccceecccccccccceeecCccceeccccCcccceecCCCcc
Q 001201 558 NLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHT 637 (1124)
Q Consensus 558 ~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~~~~~~~ 637 (1124)
.|+.|.+++|....+-..-.+.+.++++++|.+.+|.++++..-.. ....++.|++|.+..|+++++.......
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s------la~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS------LARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH------HHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 3566666666555543333345556666666666666555432110 0014666666777666666654433333
Q ss_pred CCCCcccEEEEecCCccee
Q 001201 638 SKWPMLKKLEVYGCDKVKI 656 (1124)
Q Consensus 638 ~~l~~L~~L~i~~C~~L~~ 656 (1124)
.+|+.|+.|+++.|+.++.
T Consensus 213 ~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred HhhhhHHHhhhccCchhhc
Confidence 3577777777777776663
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=8.4e-11 Score=115.11 Aligned_cols=131 Identities=23% Similarity=0.250 Sum_probs=54.8
Q ss_pred cCCCCCcEEEeecCCCccCCcccC-CCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCccchhh-hCCCCccEEE
Q 001201 130 AGMSNLRGLALSNMQFLSLPSLFH-LPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEM-AQLTQLRLFD 207 (1124)
Q Consensus 130 ~~l~~Lr~L~Ls~~~i~~lp~~i~-~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i-~~L~~L~~L~ 207 (1124)
.+..++|.|+|.+|.|+.+. .++ .+.+|++|+|++|.|+.++.+..+.+|++|++++|.|++++..+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 45556788888888888763 455 57888888888888888888888888999999999888887655 4688899999
Q ss_pred ecCCCCCCccCc-cccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeec
Q 001201 208 LSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQI 270 (1124)
Q Consensus 208 L~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 270 (1124)
+++|. +..+.. ..++.+++|++|++.+|.+. .........+..+++|+.||-..
T Consensus 95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~--------~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC--------EKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGG--------GSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCc-CCChHHhHHHHcCCCcceeeccCCccc--------chhhHHHHHHHHcChhheeCCEE
Confidence 98887 655543 22667888999999988876 22344566678888998887643
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=4.8e-12 Score=138.20 Aligned_cols=178 Identities=23% Similarity=0.294 Sum_probs=146.6
Q ss_pred CCCcCEEEeecCCCccCCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEc
Q 001201 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (1124)
Q Consensus 85 ~~~lr~L~l~~n~i~~l~~~~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L 163 (1124)
+......+++.|++.++|..+ .|-.|..+.|..|.+. .+|..+ .++..|.+|+|+.|++..+|..++.|+ |++|.+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 344557788888888888777 6778888888888776 566554 788889999999999999988887766 889999
Q ss_pred cCCCCCCc-ccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccc
Q 001201 164 DRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (1124)
Q Consensus 164 ~~~~l~~l-~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~ 242 (1124)
++|+++.+ ..++.+.+|..||.+.|.+..+|..++.|.+|+.|.+..|+ +..+|.+ ++.| .|..|+++.|.+.
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis--- 224 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS--- 224 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee---
Confidence 99998877 78888888999999999999999999999999999999888 8888887 5644 6888999888876
Q ss_pred ccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccc
Q 001201 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL 280 (1124)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~ 280 (1124)
..+..+.+|++|++|.+.+|-+..-|..+
T Consensus 225 ---------~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 225 ---------YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred ---------ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 45678889999999999988887777666
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.06 E-value=5e-11 Score=134.12 Aligned_cols=181 Identities=21% Similarity=0.208 Sum_probs=120.5
Q ss_pred CCCcCEEEeecCCCc-----cCCCCC-CCCCccEEEecCCCCCC-----CCChhhhcCCCCCcEEEeecCCCcc-CCccc
Q 001201 85 LKNCPTIFLHDCKHW-----EVPEGL-EYPQLEFFCMSPRDHSI-----KIPNHVFAGMSNLRGLALSNMQFLS-LPSLF 152 (1124)
Q Consensus 85 ~~~lr~L~l~~n~i~-----~l~~~~-~~~~L~~L~L~~n~~~~-----~~~~~~f~~l~~Lr~L~Ls~~~i~~-lp~~i 152 (1124)
...++.+++.++.+. .++... ..++++.|+++++.+.. ......|..+++|+.|++++|.+.. .+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 445888888888773 334333 56778888888876541 0112346678889999998888763 34444
Q ss_pred CCC---CCCcEEEccCCCCCC-----c-ccccCc-ccCcEEEccCCCCC-----ccchhhhCCCCccEEEecCCCCCCc-
Q 001201 153 HLP---LNLQTLCLDRCALGD-----I-AIIGNL-KKLEILSLVDSNIE-----QLPEEMAQLTQLRLFDLSGCSKLKV- 216 (1124)
Q Consensus 153 ~~l---~~Lr~L~L~~~~l~~-----l-~~i~~L-~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~- 216 (1124)
..+ ++|++|++++|.+.. + ..+..+ .+|+.|++++|.++ .++..+..+.+|++|++++|. +..
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~ 180 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDA 180 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchH
Confidence 444 448999998888762 2 456666 88899999988877 345567778888899988887 542
Q ss_pred ----cCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCc
Q 001201 217 ----IPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (1124)
Q Consensus 217 ----lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (1124)
++.. +..+++|++|++++|.+.-.+. ......+..+++|++|++++|.+.
T Consensus 181 ~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~-------~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 181 GIRALAEG-LKANCNLEVLDLNNNGLTDEGA-------SALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHH-HHhCCCCCEEeccCCccChHHH-------HHHHHHhcccCCCCEEecCCCcCc
Confidence 2222 4455788888888887651100 112344567788888888887753
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=8.1e-12 Score=136.49 Aligned_cols=187 Identities=22% Similarity=0.315 Sum_probs=142.9
Q ss_pred EEEeecCCCccCCCCC---CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCC
Q 001201 90 TIFLHDCKHWEVPEGL---EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (1124)
Q Consensus 90 ~L~l~~n~i~~l~~~~---~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~ 166 (1124)
++.|++-.+.++|... ++......+|+.|++. .+|..+ ..+..|..+.|..|.+..+|.+++++..|.+|||+.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc
Confidence 4555665666666543 5666667788888776 677654 5566778888888888888888888888888888888
Q ss_pred CCCCc-ccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccc
Q 001201 167 ALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (1124)
Q Consensus 167 ~l~~l-~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~ 245 (1124)
+++.+ ..++.|. |++|-+++|+++.+|..++.+..|.+|+.+.|. +..+|.. ++++.+|+.|.+..|.+.
T Consensus 132 qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~------ 202 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE------ 202 (722)
T ss_pred hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh------
Confidence 88777 5666554 888888888888888888888888888888887 8888877 788888888888887765
Q ss_pred cccCCCcChhhhcCCCCCCEEEeecCCCcccCccc-cccccceEEEEeCC
Q 001201 246 NVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKKLERYKIFIGD 294 (1124)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~l~l~~~~ 294 (1124)
..+.++..|+ |..||++.|++..+|-.+ .+..|+.+.+..+.
T Consensus 203 ------~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 203 ------DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred ------hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 3566777665 888888888888888877 77778877776554
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.01 E-value=2.1e-11 Score=128.78 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=21.7
Q ss_pred ccccEEEEeeCCCc-ccchHHHhhcCCCcEEEEE-cceee
Q 001201 714 RNLKNLEVVNDESE-NFRIGFLERFHNLEKLELR-WSSYK 751 (1124)
Q Consensus 714 ~~L~~L~i~~c~~l-~~~~~~l~~l~~L~~L~i~-c~~l~ 751 (1124)
..|..+++++|+.+ ......+..+++|+.+++- |.++.
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 34666666666665 2333445556677776665 55543
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=2.7e-10 Score=111.60 Aligned_cols=119 Identities=23% Similarity=0.286 Sum_probs=35.9
Q ss_pred CcCEEEeecCCCccCCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCccc-CCCCCCcEEEcc
Q 001201 87 NCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLF-HLPLNLQTLCLD 164 (1124)
Q Consensus 87 ~lr~L~l~~n~i~~l~~~~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i-~~l~~Lr~L~L~ 164 (1124)
++|.|++++|.|..+..-. .+.+|++|++++|.+. .+.. +..+++|++|++++|.|..+++.+ ..+++|++|+|+
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 4566666666666655432 3556666666666655 3432 455666666666666666654433 245666666666
Q ss_pred CCCCCCc---ccccCcccCcEEEccCCCCCccch----hhhCCCCccEEEe
Q 001201 165 RCALGDI---AIIGNLKKLEILSLVDSNIEQLPE----EMAQLTQLRLFDL 208 (1124)
Q Consensus 165 ~~~l~~l---~~i~~L~~L~~L~Ls~~~i~~lp~----~i~~L~~L~~L~L 208 (1124)
+|.|.++ ..+..+++|++|++.+|.+..-+. .+..+++|+.||-
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 6665443 445556666666666665554432 2445555555543
No 31
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=98.93 E-value=3.5e-09 Score=85.49 Aligned_cols=57 Identities=25% Similarity=0.278 Sum_probs=52.6
Q ss_pred EEEE-eecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEecC---HHHHHHHHHHhCC
Q 001201 1032 VLKL-EIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDID---AVPVVRKLRKQLC 1088 (1124)
Q Consensus 1032 ~~~~-~~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~~d---~~~~~~~l~k~~~ 1088 (1124)
+++| +|+|++|+++|.++|.+++||.++.+|..+++|+|.++.+ +.++.++|++.|+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy 61 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGY 61 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTS
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCc
Confidence 4678 5999999999999999999999999999999999999955 4999999999886
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.91 E-value=6.6e-10 Score=125.03 Aligned_cols=158 Identities=20% Similarity=0.191 Sum_probs=87.6
Q ss_pred CCCCccEEEecCCCCCCC----CChhhhcCCCCCcEEEeecCCCcc-------CCcccCCCCCCcEEEccCCCCCC-c-c
Q 001201 106 EYPQLEFFCMSPRDHSIK----IPNHVFAGMSNLRGLALSNMQFLS-------LPSLFHLPLNLQTLCLDRCALGD-I-A 172 (1124)
Q Consensus 106 ~~~~L~~L~L~~n~~~~~----~~~~~f~~l~~Lr~L~Ls~~~i~~-------lp~~i~~l~~Lr~L~L~~~~l~~-l-~ 172 (1124)
.++.|+.|++.++.+... ++ ..+...+.|+.|+++++.+.. ++..+..+++|++|++++|.+.. . .
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~-~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALA-SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHH-HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 345577777777665321 22 223455667777777765542 23345566677777777776652 1 3
Q ss_pred cccCccc---CcEEEccCCCCC-----ccchhhhCC-CCccEEEecCCCCCC-----ccCccccCCCCCccEEEeecccC
Q 001201 173 IIGNLKK---LEILSLVDSNIE-----QLPEEMAQL-TQLRLFDLSGCSKLK-----VIPPNLLSGLSRLEDLYMGNTSV 238 (1124)
Q Consensus 173 ~i~~L~~---L~~L~Ls~~~i~-----~lp~~i~~L-~~L~~L~L~~~~~l~-----~lp~~~i~~L~~L~~L~l~~~~i 238 (1124)
.+..+.+ |++|++++|.+. .+...+..+ .+|+.|++++|. +. .++.. +..+.+|++|++++|.+
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKA-LRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHH-HHhCCCcCEEECcCCCC
Confidence 3333333 777777777665 223345555 677777777776 44 22222 45556677777777665
Q ss_pred ccccccccccCCCcChhhhcCCCCCCEEEeecCCC
Q 001201 239 KWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1124)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (1124)
...+. ......+..+++|+.|++++|.+
T Consensus 178 ~~~~~-------~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 178 GDAGI-------RALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred chHHH-------HHHHHHHHhCCCCCEEeccCCcc
Confidence 41100 11223445556677777766654
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=2.2e-10 Score=115.19 Aligned_cols=182 Identities=15% Similarity=0.184 Sum_probs=139.7
Q ss_pred CCCCcCEEEeecCCCccCCCCC-CCCCccEEEecCCCCCC---CCChhh-------------------hcCCCCCcEEEe
Q 001201 84 MLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSI---KIPNHV-------------------FAGMSNLRGLAL 140 (1124)
Q Consensus 84 ~~~~lr~L~l~~n~i~~l~~~~-~~~~L~~L~L~~n~~~~---~~~~~~-------------------f~~l~~Lr~L~L 140 (1124)
+.++++.+-++.+.-+.+-... .-|.|.++.+....... -+|... ...-..|..|||
T Consensus 212 ~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDL 291 (490)
T KOG1259|consen 212 AFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDL 291 (490)
T ss_pred HhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccc
Confidence 4678888888887765554332 34677777765443221 011100 012356889999
Q ss_pred ecCCCccCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCcc
Q 001201 141 SNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPN 220 (1124)
Q Consensus 141 s~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 220 (1124)
|+|.|+.+-+++.-++.+|.|++++|.|..+..+..|.+|+.||||+|.+.++...-.+|-|.++|.|++|. +..+..
T Consensus 292 S~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LSG- 369 (490)
T KOG1259|consen 292 SGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETLSG- 369 (490)
T ss_pred cccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhhhh-
Confidence 999999998888889999999999999998877999999999999999998887767789999999999998 888865
Q ss_pred ccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCc
Q 001201 221 LLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (1124)
Q Consensus 221 ~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 278 (1124)
+++|.+|..|++++|+|..- .....+++++-|+++.+.+|.+..++.
T Consensus 370 -L~KLYSLvnLDl~~N~Ie~l----------deV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 370 -LRKLYSLVNLDLSSNQIEEL----------DEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred -hHhhhhheeccccccchhhH----------HHhcccccccHHHHHhhcCCCccccch
Confidence 89999999999999998721 124567889999999999888655443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=1.6e-10 Score=116.22 Aligned_cols=125 Identities=21% Similarity=0.227 Sum_probs=66.8
Q ss_pred CCCcCEEEeecCCCccCCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEc
Q 001201 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (1124)
Q Consensus 85 ~~~lr~L~l~~n~i~~l~~~~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L 163 (1124)
++-+..+++++|.|..+.++. -.|.+|.|+++.|.+. .+.. +..+.+|..||||+|.+..+-..=.+|-|.++|+|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEecccccee-eehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 445555666666665555555 2455666666655544 2222 34455555666666555544333334455555555
Q ss_pred cCCCCCCcccccCcccCcEEEccCCCCCccc--hhhhCCCCccEEEecCCC
Q 001201 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFDLSGCS 212 (1124)
Q Consensus 164 ~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~ 212 (1124)
++|.|..++.+++|.+|.+||+++|+|..+. .+||+|+-|+++.|.+|.
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 5555555555555555555555555555543 245555555555555544
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.79 E-value=3.8e-09 Score=122.29 Aligned_cols=186 Identities=26% Similarity=0.306 Sum_probs=116.4
Q ss_pred EEeecCCC-ccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCC-CCcEEEeecCCCccCCcccCCCCCCcEEEccCCCC
Q 001201 91 IFLHDCKH-WEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMS-NLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCAL 168 (1124)
Q Consensus 91 L~l~~n~i-~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~-~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l 168 (1124)
+....+.+ .........+.++.|++.+|.+. +++... ..+. +|+.|++++|.+..+|..++.+++|+.|++++|.+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 45555554 23333335566777777777665 555433 3342 67777777777777766677777777777777777
Q ss_pred CCc-ccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccc
Q 001201 169 GDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNV 247 (1124)
Q Consensus 169 ~~l-~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~ 247 (1124)
..+ ...+.+.+|+.|++++|.+..+|..++.+.+|++|.+++|. +..++.. +.++.++..|.+.+|.+.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~-------- 245 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE-------- 245 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee--------
Confidence 766 33337777777777777777777666666777777777775 3333333 566677777666665543
Q ss_pred cCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEEe
Q 001201 248 GRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFI 292 (1124)
Q Consensus 248 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~ 292 (1124)
..+..++.++.++.|+++.|.+..++......+++.+.+..
T Consensus 246 ----~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 246 ----DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSG 286 (394)
T ss_pred ----eccchhccccccceeccccccccccccccccCccCEEeccC
Confidence 11445566666777777777776666633555666665543
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.70 E-value=1.2e-08 Score=118.13 Aligned_cols=149 Identities=30% Similarity=0.428 Sum_probs=72.2
Q ss_pred CCCCcEEEeecCCCccCCcccCCCC-CCcEEEccCCCCCCc-ccccCcccCcEEEccCCCCCccchhhhCCCCccEEEec
Q 001201 132 MSNLRGLALSNMQFLSLPSLFHLPL-NLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLS 209 (1124)
Q Consensus 132 l~~Lr~L~Ls~~~i~~lp~~i~~l~-~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~ 209 (1124)
+..++.|++.+|.+..+|.....+. +|+.|++++|.+..+ ..++.+++|+.|++++|.+..+|...+.+.+|+.|+++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 3445555555555555555444443 555555555555554 45555555555555555555555544455555555555
Q ss_pred CCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccc-cccccceE
Q 001201 210 GCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKKLERY 288 (1124)
Q Consensus 210 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~l 288 (1124)
+|. +..+|.. ++.+..|++|.+++|.+. ..+..++++.++..+.+..+.+..++..+ ....++.+
T Consensus 195 ~N~-i~~l~~~-~~~~~~L~~l~~~~N~~~------------~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L 260 (394)
T COG4886 195 GNK-ISDLPPE-IELLSALEELDLSNNSII------------ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETL 260 (394)
T ss_pred CCc-cccCchh-hhhhhhhhhhhhcCCcce------------ecchhhhhcccccccccCCceeeeccchhcccccccee
Confidence 555 5555543 234444555555555211 12334444444444444444443332222 33334444
Q ss_pred EEEeCC
Q 001201 289 KIFIGD 294 (1124)
Q Consensus 289 ~l~~~~ 294 (1124)
++..+.
T Consensus 261 ~~s~n~ 266 (394)
T COG4886 261 DLSNNQ 266 (394)
T ss_pred cccccc
Confidence 444333
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=5.5e-09 Score=111.42 Aligned_cols=187 Identities=21% Similarity=0.182 Sum_probs=134.8
Q ss_pred CCCCcCEEEeecCCCccCCC--CC-CCCCccEEEecCCCCCCCCC--hhhhcCCCCCcEEEeecCCCccCCcc--cCCCC
Q 001201 84 MLKNCPTIFLHDCKHWEVPE--GL-EYPQLEFFCMSPRDHSIKIP--NHVFAGMSNLRGLALSNMQFLSLPSL--FHLPL 156 (1124)
Q Consensus 84 ~~~~lr~L~l~~n~i~~l~~--~~-~~~~L~~L~L~~n~~~~~~~--~~~f~~l~~Lr~L~Ls~~~i~~lp~~--i~~l~ 156 (1124)
..+++|.++|.++.+...+. .+ .|++++.|+|++|-+. .+. ..+...+++|+.|+|+.|.+...-++ -..+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 46789999999998876663 33 7999999999998654 222 34567899999999999988754332 34678
Q ss_pred CCcEEEccCCCCC--Cc-ccccCcccCcEEEccCCC-CCccchhhhCCCCccEEEecCCCCCCccCc-cccCCCCCccEE
Q 001201 157 NLQTLCLDRCALG--DI-AIIGNLKKLEILSLVDSN-IEQLPEEMAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDL 231 (1124)
Q Consensus 157 ~Lr~L~L~~~~l~--~l-~~i~~L~~L~~L~Ls~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~~i~~L~~L~~L 231 (1124)
+|+.|.|++|.++ ++ .....+++|+.|+|.+|. +..-......+..|+.|+|++|. +-.++. ...+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhh
Confidence 9999999999987 34 556678999999999994 33333456678899999999998 555542 126889999999
Q ss_pred EeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccC
Q 001201 232 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILP 277 (1124)
Q Consensus 232 ~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 277 (1124)
+++.+.+...... +..........++|++|++..|.+...+
T Consensus 277 nls~tgi~si~~~-----d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 277 NLSSTGIASIAEP-----DVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred hccccCcchhcCC-----CccchhhhcccccceeeecccCcccccc
Confidence 9988887621110 0111222456778999999888875444
No 38
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.61 E-value=1.3e-07 Score=77.78 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=56.7
Q ss_pred eeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCC--eEEEEE-ecCHHHHHHHHHHhCCceEE
Q 001201 1028 TKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDK--KMIVIG-DIDAVPVVRKLRKQLCATEL 1092 (1124)
Q Consensus 1028 ~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~--~~~v~g-~~d~~~~~~~l~k~~~~~~~ 1092 (1124)
|.+..+++. |+|++|++.|.++|.+++||.+|.+|.+.+ .|++.+ .++..++.+++.+.|+.+..
T Consensus 1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~ 69 (71)
T COG2608 1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEE 69 (71)
T ss_pred CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeee
Confidence 456788888 999999999999999999999999999995 455566 48999999999999987653
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.6e-08 Score=107.92 Aligned_cols=181 Identities=21% Similarity=0.218 Sum_probs=135.8
Q ss_pred ccCCCCcCEEEeecCCCccCCCCC----CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCc--cCCcccCCC
Q 001201 82 ADMLKNCPTIFLHDCKHWEVPEGL----EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL--SLPSLFHLP 155 (1124)
Q Consensus 82 ~~~~~~lr~L~l~~n~i~~l~~~~----~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~--~lp~~i~~l 155 (1124)
...+.++|.|+|+.|-+.++.... .+++|+.|+|+.|.+..-.....-..+.+|+.|.|++|.++ ++-.....+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 346889999999999887665432 78999999999998764333333346889999999999987 333445678
Q ss_pred CCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCccc--hhhhCCCCccEEEecCCCCCCccCccc------cCCC
Q 001201 156 LNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVIPPNL------LSGL 225 (1124)
Q Consensus 156 ~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~~~------i~~L 225 (1124)
++|..|+|.+|....+ .....+..|+.|||++|++..++ ..++.++.|+.|+++.|. +.++..-. ...+
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTF 300 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhccc
Confidence 9999999999962222 55667889999999999988887 468999999999999987 66542110 2567
Q ss_pred CCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCC
Q 001201 226 SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1124)
Q Consensus 226 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (1124)
.+|+.|++..|.+.. -.....+..+.+|+.|.+..+.+
T Consensus 301 ~kL~~L~i~~N~I~~----------w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 301 PKLEYLNISENNIRD----------WRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred ccceeeecccCcccc----------ccccchhhccchhhhhhcccccc
Confidence 899999999998851 12345566677777777766654
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.44 E-value=1.5e-07 Score=75.56 Aligned_cols=60 Identities=35% Similarity=0.475 Sum_probs=44.5
Q ss_pred CCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccCCCC
Q 001201 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCAL 168 (1124)
Q Consensus 108 ~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~l 168 (1124)
|+|++|++++|.+. .+|.++|.++++|++|++++|.+..+ |.+|..+++|++|++++|.|
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46777777777666 67777777888888888888887777 45677777888887777753
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.32 E-value=5.1e-08 Score=112.84 Aligned_cols=172 Identities=24% Similarity=0.251 Sum_probs=101.4
Q ss_pred CCcCEEEeecCCCccCCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEcc
Q 001201 86 KNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLD 164 (1124)
Q Consensus 86 ~~lr~L~l~~n~i~~l~~~~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~ 164 (1124)
..+..+++..|.+..+.... .+.+|..|++.+|.+. .+... +..+.+|++|++++|.|..+. .+..+..|+.|+++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchh-hcccc-hhhhhcchheecccccccccc-chhhccchhhheec
Confidence 34445556666665533323 5667777777777655 33321 355677777777777777663 45666667777777
Q ss_pred CCCCCCcccccCcccCcEEEccCCCCCccchh-hhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccc
Q 001201 165 RCALGDIAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (1124)
Q Consensus 165 ~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~ 243 (1124)
+|.|..+..+..+..|+.+++++|.+..++.. ...+.+|+.+++.+|. +..+.. +..+..+..+++..|.+.
T Consensus 149 ~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~---- 221 (414)
T KOG0531|consen 149 GNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKIS---- 221 (414)
T ss_pred cCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccce----
Confidence 77777776666677777777777777666543 4666777777777766 444432 344444444455555544
Q ss_pred cccccCCCcChhhhcCCC--CCCEEEeecCCCccc
Q 001201 244 GLNVGRSNASLQELKLLS--HLTTLEIQICDAMIL 276 (1124)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~l 276 (1124)
.+..+..+. +|+.+++.++.+...
T Consensus 222 ---------~~~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 222 ---------KLEGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred ---------eccCcccchhHHHHHHhcccCccccc
Confidence 112222222 266777777766554
No 42
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.32 E-value=2e-06 Score=81.56 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=64.4
Q ss_pred eeEEEEEEeecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHHhCCceEEEecC
Q 001201 1028 TKKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVSIG 1096 (1124)
Q Consensus 1028 ~~~~~~~~~~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~~~ 1096 (1124)
.-++++.|+|+|+.|...|+++|..++||++|++|.+++.|.|.+.+.|.++..+|+..++.|-+.-.+
T Consensus 6 ~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~G~G 74 (247)
T KOG4656|consen 6 TYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLRGAG 74 (247)
T ss_pred ceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEecCC
Confidence 457899999999999999999999999999999999999999999999999999999999888877554
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.29 E-value=4.9e-07 Score=72.58 Aligned_cols=58 Identities=33% Similarity=0.575 Sum_probs=35.8
Q ss_pred cCcEEEccCCCCCccch-hhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeeccc
Q 001201 179 KLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (1124)
Q Consensus 179 ~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 237 (1124)
+|++|++++|+++.+|. .|..+++|++|++++|. +..++.+.|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666666653 45666666666666665 666665556666666666666654
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.25 E-value=2.5e-06 Score=103.37 Aligned_cols=105 Identities=27% Similarity=0.435 Sum_probs=89.5
Q ss_pred CCcEEEeecCCCc-cCCcccCCCCCCcEEEccCCCCC-Cc-ccccCcccCcEEEccCCCCC-ccchhhhCCCCccEEEec
Q 001201 134 NLRGLALSNMQFL-SLPSLFHLPLNLQTLCLDRCALG-DI-AIIGNLKKLEILSLVDSNIE-QLPEEMAQLTQLRLFDLS 209 (1124)
Q Consensus 134 ~Lr~L~Ls~~~i~-~lp~~i~~l~~Lr~L~L~~~~l~-~l-~~i~~L~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~ 209 (1124)
.++.|+|++|.+. .+|..++.+++|++|+|++|.+. .+ ..++.+.+|++|+|++|.+. .+|..+++|.+|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999987 67889999999999999999987 44 67999999999999999988 689999999999999999
Q ss_pred CCCCCCccCccccCC-CCCccEEEeecccCc
Q 001201 210 GCSKLKVIPPNLLSG-LSRLEDLYMGNTSVK 239 (1124)
Q Consensus 210 ~~~~l~~lp~~~i~~-L~~L~~L~l~~~~i~ 239 (1124)
+|.....+|.. ++. +.++..+++.+|...
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCccc
Confidence 99855688877 454 457778888887643
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.22 E-value=1.2e-08 Score=114.96 Aligned_cols=174 Identities=20% Similarity=0.207 Sum_probs=126.4
Q ss_pred CCCCcCEEEeecCCCccCCCCCC-CCCccEEEecCCCC---------CCCCChhhhcCCCCCcEEEeecCCCccCCcccC
Q 001201 84 MLKNCPTIFLHDCKHWEVPEGLE-YPQLEFFCMSPRDH---------SIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFH 153 (1124)
Q Consensus 84 ~~~~lr~L~l~~n~i~~l~~~~~-~~~L~~L~L~~n~~---------~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~ 153 (1124)
..+++|+|-+.++++........ -..|++|...+.-- .+++-... ---.|.+.+.++|.+..+-.++.
T Consensus 107 pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SLq 184 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESLQ 184 (1096)
T ss_pred cccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHHH
Confidence 36789999999998876332211 13444444322100 00111110 12357778888998888877888
Q ss_pred CCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCccch-hhhCCCCccEEEecCCCCCCccCccccCCCCCccEEE
Q 001201 154 LPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLY 232 (1124)
Q Consensus 154 ~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~ 232 (1124)
-+++||.|||++|.+.....+..+.+|++|||++|.++.+|. +...+. |+.|.+++|. ++.+-. +.+|.+|+.|+
T Consensus 185 ll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~g--ie~LksL~~LD 260 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTLRG--IENLKSLYGLD 260 (1096)
T ss_pred HHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccH-HHhhhh--HHhhhhhhccc
Confidence 889999999999999988899999999999999999999885 344444 9999999998 888865 89999999999
Q ss_pred eecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCC
Q 001201 233 MGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1124)
Q Consensus 233 l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (1124)
+++|-+. ....+.-|..|..|+.|.+.||.+
T Consensus 261 lsyNll~----------~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 261 LSYNLLS----------EHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhHhhhh----------cchhhhHHHHHHHHHHHhhcCCcc
Confidence 9999876 123355566677888899998865
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.16 E-value=6.1e-06 Score=90.98 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=76.4
Q ss_pred CCcccEEEEecCCcceeecccccccccccCCccccccccceeeeeeecCCceEEeeccccccccccccCCccccccccEE
Q 001201 640 WPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNL 719 (1124)
Q Consensus 640 l~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 719 (1124)
+..++.|+|++| .|+++| ..+++|++|.+++|...+.. |....++|+.|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP--------------------------~LP~sLtsL~Lsnc~nLtsL----P~~LP~nLe~L 99 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP--------------------------VLPNELTEITIENCNNLTTL----PGSIPEGLEKL 99 (426)
T ss_pred hcCCCEEEeCCC-CCcccC--------------------------CCCCCCcEEEccCCCCcccC----Cchhhhhhhhe
Confidence 566788888888 788776 23567888888887665433 33334578888
Q ss_pred EEeeCCCc-ccchHHHhhcCCCcEEEEEcceeeEEccChhhhhhhhhccccceEeccCcccccccccCCCCcccccCccc
Q 001201 720 EVVNDESE-NFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLE 798 (1124)
Q Consensus 720 ~i~~c~~l-~~~~~~l~~l~~L~~L~i~c~~l~~l~~~~~~~~~~~~l~~L~~L~l~~~~~L~~i~~~~~~~~~~l~~L~ 798 (1124)
++++|..+ .+ .++|+.|++.++....+.. ..++|++|.+.+........ .....+++|+
T Consensus 100 ~Ls~Cs~L~sL-------P~sLe~L~L~~n~~~~L~~---------LPssLk~L~I~~~n~~~~~~----lp~~LPsSLk 159 (426)
T PRK15386 100 TVCHCPEISGL-------PESVRSLEIKGSATDSIKN---------VPNGLTSLSINSYNPENQAR----IDNLISPSLK 159 (426)
T ss_pred EccCccccccc-------ccccceEEeCCCCCccccc---------CcchHhheeccccccccccc----cccccCCccc
Confidence 88888655 33 2457777776444332211 13456677664422111100 0012235677
Q ss_pred EEEEeccCCcccccCCccccCCccEEEEcCC
Q 001201 799 SLEVWWCENLINLVPSSASFKNLTTLELWYC 829 (1124)
Q Consensus 799 ~L~i~~c~~l~~l~~~~~~~~~L~~L~i~~C 829 (1124)
+|.|++|..+. +|..+ ..+|+.|+++.+
T Consensus 160 ~L~Is~c~~i~-LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 160 TLSLTGCSNII-LPEKL--PESLQSITLHIE 187 (426)
T ss_pred EEEecCCCccc-Ccccc--cccCcEEEeccc
Confidence 77777776543 23222 246666666553
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1e-07 Score=96.64 Aligned_cols=84 Identities=27% Similarity=0.268 Sum_probs=45.6
Q ss_pred cCcEEEccCCCCC--ccchhhhCCCCccEEEecCCCCCC-ccCccccCCCCCccEEEeecccCccccccccccCCCcChh
Q 001201 179 KLEILSLVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLK-VIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQ 255 (1124)
Q Consensus 179 ~L~~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~ 255 (1124)
.||+|||+...|+ ++-.-++.+.+|+.|.+.++. +. .+-.. +++-.+|+.|+++.+.-. ..++.--
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~-iAkN~~L~~lnlsm~sG~---------t~n~~~l 254 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNT-IAKNSNLVRLNLSMCSGF---------TENALQL 254 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-cCcHHHHH-Hhccccceeecccccccc---------chhHHHH
Confidence 4666777666655 333345666666666666665 32 22222 555666677766665411 0111122
Q ss_pred hhcCCCCCCEEEeecCCC
Q 001201 256 ELKLLSHLTTLEIQICDA 273 (1124)
Q Consensus 256 ~l~~l~~L~~L~l~~~~~ 273 (1124)
-+.+++.|..|++++|..
T Consensus 255 l~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCFL 272 (419)
T ss_pred HHHhhhhHhhcCchHhhc
Confidence 355666677777776653
No 48
>PLN03150 hypothetical protein; Provisional
Probab=98.13 E-value=4.3e-06 Score=101.32 Aligned_cols=104 Identities=25% Similarity=0.304 Sum_probs=88.6
Q ss_pred CCcEEEccCCCCCC-c-ccccCcccCcEEEccCCCCC-ccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEe
Q 001201 157 NLQTLCLDRCALGD-I-AIIGNLKKLEILSLVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYM 233 (1124)
Q Consensus 157 ~Lr~L~L~~~~l~~-l-~~i~~L~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l 233 (1124)
.++.|+|++|.+.. + ..++++.+|++|+|++|.+. .+|..++.+.+|++|+|++|.....+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47899999999873 3 78999999999999999997 78999999999999999999844578876 899999999999
Q ss_pred ecccCccccccccccCCCcChhhhcCC-CCCCEEEeecCC
Q 001201 234 GNTSVKWEFEGLNVGRSNASLQELKLL-SHLTTLEIQICD 272 (1124)
Q Consensus 234 ~~~~i~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 272 (1124)
++|.+. +..+..++.+ .++..+++.+|.
T Consensus 498 s~N~l~-----------g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLS-----------GRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCccc-----------ccCChHHhhccccCceEEecCCc
Confidence 999877 4556666653 467788888876
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.4e-07 Score=95.53 Aligned_cols=63 Identities=17% Similarity=0.072 Sum_probs=38.7
Q ss_pred ccCCccEEEEccCCCcCcccchhhhhccCcccEEecccccccchhccccccCCcccCcccccccCccCEEeecCC
Q 001201 405 SFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFL 479 (1124)
Q Consensus 405 ~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 479 (1124)
.+|+|..|++++|..++. ..+..+.+++.|++|.++.|..+.--. -......|+|.+|++.+|
T Consensus 311 rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~-----------~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPET-----------LLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHH-----------eeeeccCcceEEEEeccc
Confidence 567777788887777776 333456677778888887776553110 002345566666666665
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.11 E-value=5.2e-07 Score=104.48 Aligned_cols=172 Identities=21% Similarity=0.237 Sum_probs=136.3
Q ss_pred cCCCCcCEEEeecCCCccCCC-CCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEE
Q 001201 83 DMLKNCPTIFLHDCKHWEVPE-GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTL 161 (1124)
Q Consensus 83 ~~~~~lr~L~l~~n~i~~l~~-~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L 161 (1124)
...+++..+++.+|.|..+.. ...+++|++|++++|.+. ++.. +..+..|+.|++++|.|..+. .+..++.|+.+
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLKLL 167 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccc-cccc--hhhccchhhheeccCcchhcc-CCccchhhhcc
Confidence 457899999999999999988 447999999999999987 4443 467888999999999999885 46779999999
Q ss_pred EccCCCCCCccc--ccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCC--ccEEEeeccc
Q 001201 162 CLDRCALGDIAI--IGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSR--LEDLYMGNTS 237 (1124)
Q Consensus 162 ~L~~~~l~~l~~--i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~--L~~L~l~~~~ 237 (1124)
++++|.+..+.. ...+.+|+.+++.+|.+..+. .+..+..+..+++..|. +..+.. +..+.. |+++++.+|.
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~-i~~~~~--l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNK-ISKLEG--LNELVMLHLRELYLSGNR 243 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccccc-ceeccC--cccchhHHHHHHhcccCc
Confidence 999999998866 699999999999999887664 34555666666777776 555543 444554 8999999998
Q ss_pred CccccccccccCCCcCh-hhhcCCCCCCEEEeecCCCcc
Q 001201 238 VKWEFEGLNVGRSNASL-QELKLLSHLTTLEIQICDAMI 275 (1124)
Q Consensus 238 i~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~ 275 (1124)
+. .. ..+..+.++..|++..+.+..
T Consensus 244 i~-------------~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 244 IS-------------RSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred cc-------------cccccccccccccccchhhccccc
Confidence 76 22 566677788888888777543
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.09 E-value=1.1e-05 Score=89.10 Aligned_cols=141 Identities=18% Similarity=0.195 Sum_probs=87.2
Q ss_pred HhhcCCCcEEEEEcceeeEEccChhhhhhhhhccccceEeccCcccccccccCCCCcccccCcccEEEEeccCCcccccC
Q 001201 734 LERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVP 813 (1124)
Q Consensus 734 l~~l~~L~~L~i~c~~l~~l~~~~~~~~~~~~l~~L~~L~l~~~~~L~~i~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~ 813 (1124)
+..+..++.|+|+.+.+++++. ..++|++|.+.+|.+|+.+++ ..+++|++|++++|.++.++|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---------LP~sLtsL~Lsnc~nLtsLP~------~LP~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---------LPNELTEITIENCNNLTTLPG------SIPEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---------CCCCCcEEEccCCCCcccCCc------hhhhhhhheEccCccccccccc
Confidence 4557888888888227777642 245788888888888887753 2246888888888888877754
Q ss_pred CccccCCccEEEEcCCcCccccchhHHhhccCCccEEEEecccchhhhhccCcccccccccccccceeecccCCCccccc
Q 001201 814 SSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFC 893 (1124)
Q Consensus 814 ~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~ 893 (1124)
+|+.|++.. ..+..+ ..++ ++|+.|.+.++........ ....+++|+.|.+.+|..+. +|
T Consensus 113 ------sLe~L~L~~-n~~~~L--~~LP---ssLk~L~I~~~n~~~~~~l-------p~~LPsSLk~L~Is~c~~i~-LP 172 (426)
T PRK15386 113 ------SVRSLEIKG-SATDSI--KNVP---NGLTSLSINSYNPENQARI-------DNLISPSLKTLSLTGCSNII-LP 172 (426)
T ss_pred ------ccceEEeCC-CCCccc--ccCc---chHhheecccccccccccc-------ccccCCcccEEEecCCCccc-Cc
Confidence 467777653 333332 1222 4567777754321100000 01235678999998888653 34
Q ss_pred CCCccccCCCccEEEEcccC
Q 001201 894 SGNYTLKFPSLEDLFVIECP 913 (1124)
Q Consensus 894 ~~~~~~~~~sL~~L~i~~C~ 913 (1124)
.. -..+|+.|++..+.
T Consensus 173 ~~----LP~SLk~L~ls~n~ 188 (426)
T PRK15386 173 EK----LPESLQSITLHIEQ 188 (426)
T ss_pred cc----ccccCcEEEecccc
Confidence 32 23688888887653
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.04 E-value=7.5e-07 Score=92.98 Aligned_cols=180 Identities=17% Similarity=0.151 Sum_probs=117.7
Q ss_pred CCcCEEEeecCCCc--cCC---CCC-CCCCccEEEecCCCCCCCCChhh-------------hcCCCCCcEEEeecCCCc
Q 001201 86 KNCPTIFLHDCKHW--EVP---EGL-EYPQLEFFCMSPRDHSIKIPNHV-------------FAGMSNLRGLALSNMQFL 146 (1124)
Q Consensus 86 ~~lr~L~l~~n~i~--~l~---~~~-~~~~L~~L~L~~n~~~~~~~~~~-------------f~~l~~Lr~L~Ls~~~i~ 146 (1124)
.+++.|+|++|-+. .++ ..+ .+..|+.|+|.+|.+.. .-... ..+-+.||++....|.+.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~-~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGP-EAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCCh-hHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 37888888888663 121 112 57888888888886541 11111 134567888888888776
Q ss_pred cCC-----cccCCCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEccCCCCC-----ccchhhhCCCCccEEEecC
Q 001201 147 SLP-----SLFHLPLNLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIE-----QLPEEMAQLTQLRLFDLSG 210 (1124)
Q Consensus 147 ~lp-----~~i~~l~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~ 210 (1124)
.-+ ..|...+.|+.+.++.|.|.. + ..+..+++|++|||..|-++ .+...+..+++|+.|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 443 346667788888888887652 2 56778888888888888665 3345567778888888888
Q ss_pred CCCCCccCc-----cccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCc
Q 001201 211 CSKLKVIPP-----NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (1124)
Q Consensus 211 ~~~l~~lp~-----~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (1124)
|. +..-.. ..-...++|++|.+.+|.+..+.. ......+...+.|..|++++|+..
T Consensus 251 cl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~-------~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 251 CL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAA-------LALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHH-------HHHHHHHhcchhhHHhcCCccccc
Confidence 86 443221 112346788888888888773322 222334455778888888888763
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=7.4e-06 Score=59.89 Aligned_cols=39 Identities=41% Similarity=0.477 Sum_probs=23.5
Q ss_pred CCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCcc
Q 001201 134 NLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIA 172 (1124)
Q Consensus 134 ~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~ 172 (1124)
+|++|++++|.|+.+|..+++|++|++|++++|.+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566666666666666655666666666666666655443
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.96 E-value=1.5e-06 Score=90.90 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=20.7
Q ss_pred CCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCC
Q 001201 224 GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1124)
Q Consensus 224 ~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (1124)
.-..||++..++|.....+ .......++..+.|+.+.+..|.+
T Consensus 155 ~~~~Lrv~i~~rNrlen~g-------a~~~A~~~~~~~~leevr~~qN~I 197 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGG-------ATALAEAFQSHPTLEEVRLSQNGI 197 (382)
T ss_pred CCcceEEEEeecccccccc-------HHHHHHHHHhccccceEEEecccc
Confidence 3445666666655544111 112233455555666666655553
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.95 E-value=3.1e-06 Score=101.86 Aligned_cols=132 Identities=23% Similarity=0.266 Sum_probs=63.8
Q ss_pred CCccEEEecCCCC-CCCCChhhhcCCCCCcEEEeecCCCc--cCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEE
Q 001201 108 PQLEFFCMSPRDH-SIKIPNHVFAGMSNLRGLALSNMQFL--SLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILS 184 (1124)
Q Consensus 108 ~~L~~L~L~~n~~-~~~~~~~~f~~l~~Lr~L~Ls~~~i~--~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~ 184 (1124)
.+|+.|+++|... ...++..+...++.||.|.+++-.+. ++-.-..++++|+.||+|++.++.+.++++|++||+|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 3455555544321 22333344444555555555554332 12222344555555555555555555555555555555
Q ss_pred ccCCCCCccc--hhhhCCCCccEEEecCCCCCCcc--Cc---cccCCCCCccEEEeecccCc
Q 001201 185 LVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVI--PP---NLLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 185 Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~l--p~---~~i~~L~~L~~L~l~~~~i~ 239 (1124)
+.+-.+..-. ..+.+|++|++||+|.......- .. +.-..|++||.|+.+++.+.
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 5554444322 23455566666665554321110 00 00134677777777776654
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.8e-05 Score=57.86 Aligned_cols=41 Identities=37% Similarity=0.599 Sum_probs=26.8
Q ss_pred ccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCc
Q 001201 178 KKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP 219 (1124)
Q Consensus 178 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 219 (1124)
++|++|++++|.|+.+|..+++|++|++|++++|. +.+++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 35677777777777777667777777777777776 665543
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=3.9e-07 Score=103.15 Aligned_cols=129 Identities=26% Similarity=0.246 Sum_probs=95.2
Q ss_pred CCCcCEEEeecCCCccCCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcc-cCCCCCCcEEE
Q 001201 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL-FHLPLNLQTLC 162 (1124)
Q Consensus 85 ~~~lr~L~l~~n~i~~l~~~~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~-i~~l~~Lr~L~ 162 (1124)
+.++...+.++|.+..+...+ -++.|+.|+|++|.+. ++. ++..+.+|++|||++|.+..+|.- ...+ +|+.|+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhh-hheeee
Confidence 456777788888887777666 4688888888888776 333 467888888888888888888752 2233 488888
Q ss_pred ccCCCCCCcccccCcccCcEEEccCCCCCccc--hhhhCCCCccEEEecCCCCCCccC
Q 001201 163 LDRCALGDIAIIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVIP 218 (1124)
Q Consensus 163 L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp 218 (1124)
+++|.++.+..+.+|++|+.||+++|-|.... .-++.|..|+.|.|.||. +.--|
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP-l~c~p 295 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP-LCCAP 295 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc-cccCH
Confidence 88888888888888888888888888655332 236777888888888886 44333
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.76 E-value=3.4e-05 Score=74.65 Aligned_cols=118 Identities=21% Similarity=0.289 Sum_probs=65.1
Q ss_pred CEEEeecCCCccCCC-CCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCC-CCCCcEEEccCC
Q 001201 89 PTIFLHDCKHWEVPE-GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHL-PLNLQTLCLDRC 166 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~-~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~-l~~Lr~L~L~~~ 166 (1124)
+.+++.+.++..+.. +.-......++|.+|++. .++ .|..++.|.+|.|.+|.|..+-..+.. +++|.+|.|.+|
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccchhhccccccccceecccccchh-hcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 444555554443333 123445566666666654 232 256677777777777777766444443 356777777777
Q ss_pred CCCCc---ccccCcccCcEEEccCCCCCccch----hhhCCCCccEEEec
Q 001201 167 ALGDI---AIIGNLKKLEILSLVDSNIEQLPE----EMAQLTQLRLFDLS 209 (1124)
Q Consensus 167 ~l~~l---~~i~~L~~L~~L~Ls~~~i~~lp~----~i~~L~~L~~L~L~ 209 (1124)
.|..+ ..+..++.|++|.+-+|.+++-+. -+.++++|++||.+
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 65544 455556666666666665554432 13444444444443
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.73 E-value=1.6e-05 Score=95.75 Aligned_cols=135 Identities=18% Similarity=0.243 Sum_probs=79.0
Q ss_pred CCCCcEEEeecCCCc--cCCcccC-CCCCCcEEEccCCCCC--Cc-ccccCcccCcEEEccCCCCCccchhhhCCCCccE
Q 001201 132 MSNLRGLALSNMQFL--SLPSLFH-LPLNLQTLCLDRCALG--DI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRL 205 (1124)
Q Consensus 132 l~~Lr~L~Ls~~~i~--~lp~~i~-~l~~Lr~L~L~~~~l~--~l-~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 205 (1124)
-.+|++|+++|...- .-|..++ .||+||.|.+++-.+. ++ .-..++++|..||+|+++++.+ .++++|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 356788888775422 1133344 3578888887775543 23 4456677788888888887777 57788888888
Q ss_pred EEecCCCCCCccC-ccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCC
Q 001201 206 FDLSGCSKLKVIP-PNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1124)
Q Consensus 206 L~L~~~~~l~~lp-~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (1124)
|.+.+-. +..-. -..+-+|++|++||++......... ......+--..|++||.||.+++.+
T Consensus 200 L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~-----ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTK-----IIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCC-CCchhhHHHHhcccCCCeeeccccccccchH-----HHHHHHHhcccCccccEEecCCcch
Confidence 8776644 22211 1115677888888877654330000 0000011123477788888876654
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.64 E-value=8.5e-05 Score=71.97 Aligned_cols=103 Identities=18% Similarity=0.166 Sum_probs=87.2
Q ss_pred CCCcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC--cccCCCCCCcEEE
Q 001201 85 LKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP--SLFHLPLNLQTLC 162 (1124)
Q Consensus 85 ~~~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp--~~i~~l~~Lr~L~ 162 (1124)
......+++++|++..++..-.+++|.+|.|.+|++. .|.+.+-.-+++|..|.|.+|.|..+- ..+..++.|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3467789999999988887778999999999999988 677666666788999999999998763 3467889999999
Q ss_pred ccCCCCCCc-----ccccCcccCcEEEccCC
Q 001201 163 LDRCALGDI-----AIIGNLKKLEILSLVDS 188 (1124)
Q Consensus 163 L~~~~l~~l-----~~i~~L~~L~~L~Ls~~ 188 (1124)
+-+|.+..- ..+..+++|++||+++-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 999997743 67899999999999874
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.63 E-value=2.2e-06 Score=102.63 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=51.6
Q ss_pred CCCccEEEEecCCCccccCcchhhhhccCCCEEEEecc-ccccceecccccccccceeecCccceeccccCcccceecCC
Q 001201 556 SQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYC-SSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPG 634 (1124)
Q Consensus 556 l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C-~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~~~~ 634 (1124)
.++|+.|.+.+|..+....-......++.|++|++++| ......+... ......+++|+.|++..|..+++....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL----LLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh----hhhhhhcCCcCccchhhhhccCchhHH
Confidence 46677777777776665322334566677777777763 2221111000 001114466777777776665544433
Q ss_pred CccCCCCcccEEEEecCCcce
Q 001201 635 THTSKWPMLKKLEVYGCDKVK 655 (1124)
Q Consensus 635 ~~~~~l~~L~~L~i~~C~~L~ 655 (1124)
.....|++|+.|.+.+|..++
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLT 283 (482)
T ss_pred HHHhhCCCcceEccCCCCccc
Confidence 333346677777766676643
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.56 E-value=5.4e-06 Score=74.58 Aligned_cols=107 Identities=18% Similarity=0.234 Sum_probs=62.9
Q ss_pred CcCEEEeecCCCccCCCCC----CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEE
Q 001201 87 NCPTIFLHDCKHWEVPEGL----EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (1124)
Q Consensus 87 ~lr~L~l~~n~i~~l~~~~----~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~ 162 (1124)
.+..++|++|++-.+++.. +...|...+|++|.+. ++|..+-...+.++.|++++|.|.++|..+..++.||.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 3455667777665444322 4456666666666655 5666655555566667777777777766666666666666
Q ss_pred ccCCCCCCc-ccccCcccCcEEEccCCCCCccc
Q 001201 163 LDRCALGDI-AIIGNLKKLEILSLVDSNIEQLP 194 (1124)
Q Consensus 163 L~~~~l~~l-~~i~~L~~L~~L~Ls~~~i~~lp 194 (1124)
++.|.+... ..+..|.+|-+||..+|.+..+|
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCc
Confidence 666654433 44444555555555555554444
No 63
>PLN02957 copper, zinc superoxide dismutase
Probab=97.47 E-value=0.00055 Score=71.76 Aligned_cols=72 Identities=13% Similarity=0.170 Sum_probs=64.6
Q ss_pred eeEEEEEEeecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHHhCCceEEEecCCCC
Q 001201 1028 TKKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVSIGPAN 1099 (1124)
Q Consensus 1028 ~~~~~~~~~~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~~~~~~ 1099 (1124)
-+++.++|.|+|+.|+.++.+++.+++||.++.+|...++++|.++.++..+++++++.++.++++..++++
T Consensus 5 ~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~~ 76 (238)
T PLN02957 5 ELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIGQGDPE 76 (238)
T ss_pred cEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEecCCCcc
Confidence 456778889999999999999999999999999999999999999889999999999989888887765543
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=8.8e-05 Score=75.85 Aligned_cols=84 Identities=24% Similarity=0.268 Sum_probs=43.1
Q ss_pred cccCcEEEccCCCCCcc---chhhhCCCCccEEEecCCCCCCccCcccc-CCCCCccEEEeecccCccccccccccCCCc
Q 001201 177 LKKLEILSLVDSNIEQL---PEEMAQLTQLRLFDLSGCSKLKVIPPNLL-SGLSRLEDLYMGNTSVKWEFEGLNVGRSNA 252 (1124)
Q Consensus 177 L~~L~~L~Ls~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~~i-~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~ 252 (1124)
..+++.|||.+|.|... -.-+.+|+.|++|+++.|. +...-.. + .-+.+|++|.+.|..+.|...
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~-lp~p~~nl~~lVLNgT~L~w~~~--------- 138 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKS-LPLPLKNLRVLVLNGTGLSWTQS--------- 138 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCcccc-CcccccceEEEEEcCCCCChhhh---------
Confidence 34455555555554432 2234556666666666654 2211111 1 234566677766666665322
Q ss_pred ChhhhcCCCCCCEEEeecCC
Q 001201 253 SLQELKLLSHLTTLEIQICD 272 (1124)
Q Consensus 253 ~~~~l~~l~~L~~L~l~~~~ 272 (1124)
-..+..++.++.|.++.|.
T Consensus 139 -~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 139 -TSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred -hhhhhcchhhhhhhhccch
Confidence 2345566666666666654
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.35 E-value=2.1e-05 Score=70.92 Aligned_cols=111 Identities=22% Similarity=0.285 Sum_probs=76.5
Q ss_pred CCccEEEecCCCCCCCCChhh--hcCCCCCcEEEeecCCCccCCcccCC-CCCCcEEEccCCCCCCc-ccccCcccCcEE
Q 001201 108 PQLEFFCMSPRDHSIKIPNHV--FAGMSNLRGLALSNMQFLSLPSLFHL-PLNLQTLCLDRCALGDI-AIIGNLKKLEIL 183 (1124)
Q Consensus 108 ~~L~~L~L~~n~~~~~~~~~~--f~~l~~Lr~L~Ls~~~i~~lp~~i~~-l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L 183 (1124)
..+..++|++|.+. .+++.. ..+..+|...+|++|.+..+|+.|.. ++.+.+|+|.+|.|.++ ..+..++.|+.|
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 34555677777554 344322 24556677778888888888776653 34777888888877766 557777778888
Q ss_pred EccCCCCCccchhhhCCCCccEEEecCCCCCCccCcc
Q 001201 184 SLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPN 220 (1124)
Q Consensus 184 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 220 (1124)
+++.|.+...|..|..|.+|-+|+..++. ...+|.+
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 88888777777777777777777777776 5566654
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.11 E-value=0.00029 Score=71.24 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=22.3
Q ss_pred ccccCcccCcEEEccCCCCC-ccc----hhhhCCCCccEEEecCCC
Q 001201 172 AIIGNLKKLEILSLVDSNIE-QLP----EEMAQLTQLRLFDLSGCS 212 (1124)
Q Consensus 172 ~~i~~L~~L~~L~Ls~~~i~-~lp----~~i~~L~~L~~L~L~~~~ 212 (1124)
..+-++++|+..+||.|.+. +.| +-|++-+.|.||.+++|.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 34455566666666666443 222 234555666666666665
No 67
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.06 E-value=0.0012 Score=83.47 Aligned_cols=66 Identities=9% Similarity=0.093 Sum_probs=59.7
Q ss_pred ceeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHHhCCceEEEe
Q 001201 1027 RTKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVS 1094 (1124)
Q Consensus 1027 ~~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~ 1094 (1124)
||+++.++|+ |+|.+|+++|.+++.+++||++|.+|.+ +.+|.+..++..+.+.+++.|+.+++..
T Consensus 1 ~~~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 67 (834)
T PRK10671 1 MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQAGYDASVSH 67 (834)
T ss_pred CCeEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhcCCcccccc
Confidence 4578999998 9999999999999999999999999994 6677788999999999999999888764
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.03 E-value=0.0001 Score=88.35 Aligned_cols=137 Identities=23% Similarity=0.148 Sum_probs=58.1
Q ss_pred cccccEEEEeeCCCccc--chHHHhhcCCCcEEEEE-c-ceeeEEccChhhhhhhhhccccceEeccCcccccccccCCC
Q 001201 713 FRNLKNLEVVNDESENF--RIGFLERFHNLEKLELR-W-SSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDS 788 (1124)
Q Consensus 713 ~~~L~~L~i~~c~~l~~--~~~~l~~l~~L~~L~i~-c-~~l~~l~~~~~~~~~~~~l~~L~~L~l~~~~~L~~i~~~~~ 788 (1124)
++.|+.|.+..|..+.. -......++.|+.|+++ | ...... +.... .....+.+|+.|+++.|..+.... .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~-~~~~~~~~L~~l~l~~~~~isd~~---l 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLS-PLLLL-LLLSICRKLKSLDLSGCGLVTDIG---L 261 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccc-hhHhh-hhhhhcCCcCccchhhhhccCchh---H
Confidence 45566666666665521 22334456666666665 2 111111 10000 011234555555555554433220 0
Q ss_pred Cc-ccccCcccEEEEeccCCcc--cccCCccccCCccEEEEcCCcCccccchhHHhhccCCccEEEEec
Q 001201 789 KL-DSITENLESLEVWWCENLI--NLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDG 854 (1124)
Q Consensus 789 ~~-~~~l~~L~~L~i~~c~~l~--~l~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 854 (1124)
.. ...+++|++|.+.+|..++ .+......+++|++|++++|..+.+........++++|+.|.+..
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 00 1124455555555555432 122223344555555555555554433333344444444444333
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=6.4e-05 Score=76.08 Aligned_cols=106 Identities=25% Similarity=0.350 Sum_probs=76.3
Q ss_pred CCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCc-cccCCCCCccEEE
Q 001201 154 LPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLY 232 (1124)
Q Consensus 154 ~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~~i~~L~~L~~L~ 232 (1124)
.+.+.+.|++.||.+.++..+.+++.|++|.|+-|.|++|- .+..+++|+.|+|..|. +..+.+ ..+.++++|+.|.
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHh
Confidence 35566778888888888888888888888888888888874 47788888888888887 666543 1256778888888
Q ss_pred eecccCccccccccccCCCcChhhhcCCCCCCEEE
Q 001201 233 MGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLE 267 (1124)
Q Consensus 233 l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 267 (1124)
+..|.-... ...+.....|+-|++|+.||
T Consensus 95 L~ENPCc~~------ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGE------AGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccc------cchhHHHHHHHHcccchhcc
Confidence 877764411 11133445677788888776
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.65 E-value=0.00086 Score=68.31 Aligned_cols=82 Identities=23% Similarity=0.330 Sum_probs=47.4
Q ss_pred CCCCCcEEEeecC--CCc-cCCcccCCCCCCcEEEccCCCCCCc---ccccCcccCcEEEccCCCCCccc----hhhhCC
Q 001201 131 GMSNLRGLALSNM--QFL-SLPSLFHLPLNLQTLCLDRCALGDI---AIIGNLKKLEILSLVDSNIEQLP----EEMAQL 200 (1124)
Q Consensus 131 ~l~~Lr~L~Ls~~--~i~-~lp~~i~~l~~Lr~L~L~~~~l~~l---~~i~~L~~L~~L~Ls~~~i~~lp----~~i~~L 200 (1124)
.+++|+.|.+|.| ++. .++-....+++|++|+|++|.|..+ ..+..+.+|..||+.+|..+.+- ..|.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 3445555555555 222 2222333446666666666665544 44556666777777777666553 236677
Q ss_pred CCccEEEecCCC
Q 001201 201 TQLRLFDLSGCS 212 (1124)
Q Consensus 201 ~~L~~L~L~~~~ 212 (1124)
.+|.+|+-....
T Consensus 143 ~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 143 PSLKYLDGCDVD 154 (260)
T ss_pred hhhccccccccC
Confidence 888888766554
No 71
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.00065 Score=69.70 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=66.2
Q ss_pred cCEEEeecCCCccCCCCC----CCCCccEEEecCCCCCCCCC--hhhhcCCCCCcEEEeecCCCccCCccc-CCCCCCcE
Q 001201 88 CPTIFLHDCKHWEVPEGL----EYPQLEFFCMSPRDHSIKIP--NHVFAGMSNLRGLALSNMQFLSLPSLF-HLPLNLQT 160 (1124)
Q Consensus 88 lr~L~l~~n~i~~l~~~~----~~~~L~~L~L~~n~~~~~~~--~~~f~~l~~Lr~L~Ls~~~i~~lp~~i-~~l~~Lr~ 160 (1124)
+.-+.+.++.|.+..... .++.++.|+|.+|.++ ++. ..++.+|++|++|+++.|.+...-+.+ -.+.+||+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 334555566665444322 5778888888888776 333 245678888888888888765332222 35678888
Q ss_pred EEccCCCCC--Cc-ccccCcccCcEEEccCCCCC
Q 001201 161 LCLDRCALG--DI-AIIGNLKKLEILSLVDSNIE 191 (1124)
Q Consensus 161 L~L~~~~l~--~l-~~i~~L~~L~~L~Ls~~~i~ 191 (1124)
|-|.|..+. .. ..+..++.++.|.++.|++.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 888888765 33 55666777777777766544
No 72
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.58 E-value=0.00089 Score=68.20 Aligned_cols=108 Identities=25% Similarity=0.292 Sum_probs=62.0
Q ss_pred CCCCCCcEEEccCCCCCCcccccCcccCcEEEccCC--CCC-ccchhhhCCCCccEEEecCCCCCC---ccCccccCCCC
Q 001201 153 HLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDS--NIE-QLPEEMAQLTQLRLFDLSGCSKLK---VIPPNLLSGLS 226 (1124)
Q Consensus 153 ~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~--~i~-~lp~~i~~L~~L~~L~L~~~~~l~---~lp~~~i~~L~ 226 (1124)
-.+..|+.|.+.++.++.+..+..|++|++|.++.| .+. .++.-..++.+|++|++++|. ++ +++. +..+.
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~p--l~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRP--LKELE 116 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccch--hhhhc
Confidence 344556666666666666666667777777777776 332 444444555777777777775 43 3333 45566
Q ss_pred CccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecC
Q 001201 227 RLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQIC 271 (1124)
Q Consensus 227 ~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 271 (1124)
+|..|++.+|... ......-..+.-+++|.+|+-...
T Consensus 117 nL~~Ldl~n~~~~--------~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 117 NLKSLDLFNCSVT--------NLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred chhhhhcccCCcc--------ccccHHHHHHHHhhhhcccccccc
Confidence 6667777666554 111222334555666766665433
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.12 E-value=0.014 Score=55.18 Aligned_cols=105 Identities=21% Similarity=0.352 Sum_probs=42.6
Q ss_pred CChhhhcCCCCCcEEEeecCCCccCC-cccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCccch-hhhC
Q 001201 124 IPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQ 199 (1124)
Q Consensus 124 ~~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~ 199 (1124)
++..+|.++.+|+.+.+.. .+..++ .+|..+.+|+.+.+.++ +..+ ..+.++.+|+.+.+.. .+..++. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 3444455555555555543 344442 23555555555555443 4443 3445555555555543 3444432 3445
Q ss_pred CCCccEEEecCCCCCCccCccccCCCCCccEEEee
Q 001201 200 LTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMG 234 (1124)
Q Consensus 200 L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~ 234 (1124)
+.+|+.+.+..+ +..++...+.+. +|+.+.+.
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 566666665432 445555545554 55555544
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.05 E-value=0.015 Score=55.08 Aligned_cols=115 Identities=17% Similarity=0.313 Sum_probs=57.9
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC-cccCCCCCCcEEEccCCCCCCc--ccccCcccCcE
Q 001201 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEI 182 (1124)
Q Consensus 106 ~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~ 182 (1124)
++++|+.+.+.. ... .++...|.++.+|+.+.+..+ +..++ .++..+.+|+.+.+.. .+..+ ..+..+.+|+.
T Consensus 10 ~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 566777777654 233 577777777777888887764 66554 3567776788888765 44434 55667778888
Q ss_pred EEccCCCCCccch-hhhCCCCccEEEecCCCCCCccCccccCCCCCc
Q 001201 183 LSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL 228 (1124)
Q Consensus 183 L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L 228 (1124)
+++..+ +..++. .+.+. +|+.+.+.. .+..++...|.+..+|
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 888664 666653 46666 888887765 2667777666666555
No 75
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.00076 Score=68.55 Aligned_cols=100 Identities=21% Similarity=0.197 Sum_probs=53.5
Q ss_pred CCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCccc--hhhhCCCCccEEEec
Q 001201 132 MSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFDLS 209 (1124)
Q Consensus 132 l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~ 209 (1124)
+.+.+.|++-|+.+..+. ...+++.|++|.|+-|.|+.+..+..+++|+.|+|..|.|..+- ..+.+|++||.|-|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 334444555555544431 23344555555555555555555555666666666666565553 245667777777776
Q ss_pred CCCCCCccCc----cccCCCCCccEEE
Q 001201 210 GCSKLKVIPP----NLLSGLSRLEDLY 232 (1124)
Q Consensus 210 ~~~~l~~lp~----~~i~~L~~L~~L~ 232 (1124)
.|.....-+. .++.-|++|+.|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 6653333322 1245566777766
No 76
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.36 E-value=0.0069 Score=61.59 Aligned_cols=152 Identities=17% Similarity=0.180 Sum_probs=76.9
Q ss_pred CCCcCEEEeecCCCcc-----CCCCC-CCCCccEEEecCCCC---CCCCCh------hhhcCCCCCcEEEeecCCCc-cC
Q 001201 85 LKNCPTIFLHDCKHWE-----VPEGL-EYPQLEFFCMSPRDH---SIKIPN------HVFAGMSNLRGLALSNMQFL-SL 148 (1124)
Q Consensus 85 ~~~lr~L~l~~n~i~~-----l~~~~-~~~~L~~L~L~~n~~---~~~~~~------~~f~~l~~Lr~L~Ls~~~i~-~l 148 (1124)
...+..+++++|.|.+ +...+ .-.+|+..+++.-.. ...++. .++-++++|+..+||.|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4566677777776632 22222 345555555543211 111221 22446677777777777654 22
Q ss_pred Cc----ccCCCCCCcEEEccCCCCCCc--cc-------------ccCcccCcEEEccCCCCCccchh-----hhCCCCcc
Q 001201 149 PS----LFHLPLNLQTLCLDRCALGDI--AI-------------IGNLKKLEILSLVDSNIEQLPEE-----MAQLTQLR 204 (1124)
Q Consensus 149 p~----~i~~l~~Lr~L~L~~~~l~~l--~~-------------i~~L~~L~~L~Ls~~~i~~lp~~-----i~~L~~L~ 204 (1124)
|. -|++-+.|.+|.+++|.+..+ .- ..+-+.|++.+...|++...|.. +..=.+|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 32 355566677777777765432 11 22345566666666666554432 22224566
Q ss_pred EEEecCCCCCCccCcc-------ccCCCCCccEEEeecccCc
Q 001201 205 LFDLSGCSKLKVIPPN-------LLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 205 ~L~L~~~~~l~~lp~~-------~i~~L~~L~~L~l~~~~i~ 239 (1124)
++.+..|. ++ |.+ .+..+.+|+.|++.+|.++
T Consensus 189 ~vki~qNg-Ir--pegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 189 EVKIQQNG-IR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred eEEeeecC-cC--cchhHHHHHHHHHHhCcceeeeccccchh
Confidence 66666654 32 211 0234556666666666555
No 77
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.20 E-value=0.0069 Score=36.70 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=12.5
Q ss_pred cCcEEEccCCCCCccchhhhC
Q 001201 179 KLEILSLVDSNIEQLPEEMAQ 199 (1124)
Q Consensus 179 ~L~~L~Ls~~~i~~lp~~i~~ 199 (1124)
+|++||+++|+++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655544
No 78
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.22 E-value=0.018 Score=34.90 Aligned_cols=21 Identities=43% Similarity=0.480 Sum_probs=13.5
Q ss_pred CCcEEEeecCCCccCCcccCC
Q 001201 134 NLRGLALSNMQFLSLPSLFHL 154 (1124)
Q Consensus 134 ~Lr~L~Ls~~~i~~lp~~i~~ 154 (1124)
+|++||+++|.++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777776666665544
No 79
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=93.65 E-value=0.15 Score=61.89 Aligned_cols=63 Identities=17% Similarity=0.273 Sum_probs=56.3
Q ss_pred eEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cC-HHHHHHHHHHhCCceEE
Q 001201 1029 KKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---ID-AVPVVRKLRKQLCATEL 1092 (1124)
Q Consensus 1029 ~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d-~~~~~~~l~k~~~~~~~ 1092 (1124)
.+..+.+. |||..|..++. ++.+++||+.+.++...++++|..+ .+ +..+..++++.++.+..
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 35678888 99999999999 9999999999999999999999876 46 78999999999997765
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=0.011 Score=57.93 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=33.5
Q ss_pred CCCccEEEEecCCCccccCcchhhhhccCCCEEEEeccccccceecccccccccceeecCccceeccccCcc
Q 001201 556 SQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSE 627 (1124)
Q Consensus 556 l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~c~~ 627 (1124)
++.++.|.+.+|..+.+....-+.+-.++|+.|+|++|+.|++-.... ...+++|+.|.|.+++.
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-------L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-------LLKLKNLRRLHLYDLPY 188 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-------HHHhhhhHHHHhcCchh
Confidence 566666677777666653222222234566666666666665432111 11345555555555443
No 81
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=93.08 E-value=0.63 Score=36.72 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=47.6
Q ss_pred EEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCC
Q 001201 1030 KAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLC 1088 (1124)
Q Consensus 1030 ~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~ 1088 (1124)
+..+.|+ ++|..|...+.+.+...+|+..+.++...+++++..+ .+...+...+...++
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 65 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGY 65 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 4567887 9999999999999999999999999999998887643 466677666655443
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.52 E-value=0.029 Score=55.01 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=42.3
Q ss_pred ccccccceeecccccccccccccccCccccCCccEEEEccCCCcCcccchhhhhccCcccEEecccccc
Q 001201 377 NAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKN 445 (1124)
Q Consensus 377 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~L~~c~~ 445 (1124)
..++.++.|.+.+|.++.+++...+.. .+++|+.|+|++|+++++-.. ..+..+++|+.|.|.+.+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchh
Confidence 345566677777777777765544433 667777777777777776422 3455666666666666443
No 83
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.34 E-value=0.084 Score=29.59 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=5.8
Q ss_pred cCcEEEccCCCCCccc
Q 001201 179 KLEILSLVDSNIEQLP 194 (1124)
Q Consensus 179 ~L~~L~Ls~~~i~~lp 194 (1124)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3445555555544443
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.01 E-value=0.0049 Score=61.18 Aligned_cols=84 Identities=15% Similarity=0.058 Sum_probs=49.8
Q ss_pred cCCCCCCcEEEccCCCCCCc-ccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccE
Q 001201 152 FHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLED 230 (1124)
Q Consensus 152 i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~ 230 (1124)
+.....-.+||++.|++..+ ..+..++.|..||++.|.+.-+|..++.+..++++++..|. +...|.+ ++.++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s-~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKS-QKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcc-ccccCCcch
Confidence 34444555555555555544 55555666666666666666666666666666666666555 6666655 566666666
Q ss_pred EEeeccc
Q 001201 231 LYMGNTS 237 (1124)
Q Consensus 231 L~l~~~~ 237 (1124)
++..++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 6655554
No 85
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.55 E-value=0.16 Score=28.51 Aligned_cols=16 Identities=63% Similarity=0.810 Sum_probs=5.9
Q ss_pred CCcEEEeecCCCccCC
Q 001201 134 NLRGLALSNMQFLSLP 149 (1124)
Q Consensus 134 ~Lr~L~Ls~~~i~~lp 149 (1124)
+|++|++++|.++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3455555555544443
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.68 E-value=0.011 Score=58.91 Aligned_cols=83 Identities=14% Similarity=0.105 Sum_probs=53.1
Q ss_pred cCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCc-ccccCcccCcEEEccCCCCCccchhhhCCCCccEEEe
Q 001201 130 AGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDL 208 (1124)
Q Consensus 130 ~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L 208 (1124)
...+...+||++.|++..+-..|+.++.|..|+++.|.+..+ ..++.+..++.+++..|+.+.+|.+++++.+++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 344555666666666555555555566666666666665555 5666666666666666677777777777777777777
Q ss_pred cCCC
Q 001201 209 SGCS 212 (1124)
Q Consensus 209 ~~~~ 212 (1124)
-++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 6665
No 87
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=87.01 E-value=1.5 Score=53.07 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=60.0
Q ss_pred eEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCceEEEec
Q 001201 1029 KKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELVSI 1095 (1124)
Q Consensus 1029 ~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~~~ 1095 (1124)
+++++.|. |.|+.|..++.+.+.+++||+++++|...++++|.=+ .-|-++++.+...+..+.+...
T Consensus 146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~~~ 216 (951)
T KOG0207|consen 146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASVRPY 216 (951)
T ss_pred CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccceeeec
Confidence 67899998 9999999999999999999999999999999998766 5788899999887888877653
No 88
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.79 E-value=0.58 Score=29.61 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=11.0
Q ss_pred ccCcEEEccCCCCCccchh
Q 001201 178 KKLEILSLVDSNIEQLPEE 196 (1124)
Q Consensus 178 ~~L~~L~Ls~~~i~~lp~~ 196 (1124)
.+|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666543
No 89
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.79 E-value=0.58 Score=29.61 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=11.0
Q ss_pred ccCcEEEccCCCCCccchh
Q 001201 178 KKLEILSLVDSNIEQLPEE 196 (1124)
Q Consensus 178 ~~L~~L~Ls~~~i~~lp~~ 196 (1124)
.+|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666543
No 90
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=86.20 E-value=2.9 Score=35.74 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=43.3
Q ss_pred eeEEEEEEeecchhHHHHHHhHhcCCCCeeEEE-----EeCCCC--eEEEEEe-cCHHHHHHHHHHhCC
Q 001201 1028 TKKAVLKLEIHGEKARQKAFSIVSKFTGVLSIL-----FDPKDK--KMIVIGD-IDAVPVVRKLRKQLC 1088 (1124)
Q Consensus 1028 ~~~~~~~~~~~c~~c~~~~~~~~~~~~gv~~v~-----~d~~~~--~~~v~g~-~d~~~~~~~l~k~~~ 1088 (1124)
.++++|.|..--+=-.-.+-+++++++||+.|. +|.+.. ++||.|+ +|.+++.+++.+.|+
T Consensus 4 irRlVLDVlKP~~p~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg 72 (95)
T PF02680_consen 4 IRRLVLDVLKPHEPSIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGG 72 (95)
T ss_dssp EEEEEEEEEEESSS-HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-
T ss_pred eeEEEEEeecCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCC
Confidence 456777776554444556677899999988764 444443 7999998 999999999999876
No 91
>PRK10671 copA copper exporting ATPase; Provisional
Probab=85.59 E-value=1.6 Score=55.67 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=54.4
Q ss_pred EEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHHhCCceE
Q 001201 1030 KAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATE 1091 (1124)
Q Consensus 1030 ~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~ 1091 (1124)
++.+.+. |+|..|...+.+.+.+.+||.++.++...+++.|.+..++.++.+.+++.++.+.
T Consensus 100 ~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~Gy~a~ 162 (834)
T PRK10671 100 SQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAE 162 (834)
T ss_pred eEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHHhcCCCcc
Confidence 4567777 9999999999999999999999999999999888877888888888888777654
No 92
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.66 E-value=0.69 Score=29.25 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=18.1
Q ss_pred CCCccEEEecCCCCCCccCccccC
Q 001201 200 LTQLRLFDLSGCSKLKVIPPNLLS 223 (1124)
Q Consensus 200 L~~L~~L~L~~~~~l~~lp~~~i~ 223 (1124)
|++|++|+|++|. +..+|.++|.
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHcc
Confidence 5678899999987 8888877543
No 93
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.66 E-value=0.69 Score=29.25 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=18.1
Q ss_pred CCCccEEEecCCCCCCccCccccC
Q 001201 200 LTQLRLFDLSGCSKLKVIPPNLLS 223 (1124)
Q Consensus 200 L~~L~~L~L~~~~~l~~lp~~~i~ 223 (1124)
|++|++|+|++|. +..+|.++|.
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHcc
Confidence 5678899999987 8888877543
No 94
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=76.75 E-value=5.3 Score=49.99 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=49.9
Q ss_pred cceeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEecC-HHHHHHHHHHhCCce
Q 001201 1026 TRTKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDID-AVPVVRKLRKQLCAT 1090 (1124)
Q Consensus 1026 ~~~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~~d-~~~~~~~l~k~~~~~ 1090 (1124)
+..+++.+++. |+|..|..++.+++.+.+||.++.++...++++|.-+.+ ..++.+.+++.++.+
T Consensus 50 ~~~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~~Gy~a 116 (741)
T PRK11033 50 VSGTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQKAGFSL 116 (741)
T ss_pred CCCceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHhccccc
Confidence 34556677787 999999999999999999999999999998877764321 245556666656544
No 95
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=75.06 E-value=0.043 Score=63.74 Aligned_cols=178 Identities=20% Similarity=0.148 Sum_probs=93.5
Q ss_pred CcCEEEeecCCCccCC-----CCC-CCCCccEEEecCCCCCCCCChh---hhcCC-CCCcEEEeecCCCc-----cCCcc
Q 001201 87 NCPTIFLHDCKHWEVP-----EGL-EYPQLEFFCMSPRDHSIKIPNH---VFAGM-SNLRGLALSNMQFL-----SLPSL 151 (1124)
Q Consensus 87 ~lr~L~l~~n~i~~l~-----~~~-~~~~L~~L~L~~n~~~~~~~~~---~f~~l-~~Lr~L~Ls~~~i~-----~lp~~ 151 (1124)
.++++++.+|.+..-. ... ..+.|..|++++|.+...--.. .+... ..|++|++..|.+. .+.+.
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3667777777664332 222 5667777777777665211111 11222 34566666666554 23445
Q ss_pred cCCCCCCcEEEccCCCCCCc------ccc----cCcccCcEEEccCCCCCcc-----chhhhCCCC-ccEEEecCCCCCC
Q 001201 152 FHLPLNLQTLCLDRCALGDI------AII----GNLKKLEILSLVDSNIEQL-----PEEMAQLTQ-LRLFDLSGCSKLK 215 (1124)
Q Consensus 152 i~~l~~Lr~L~L~~~~l~~l------~~i----~~L~~L~~L~Ls~~~i~~l-----p~~i~~L~~-L~~L~L~~~~~l~ 215 (1124)
+....+|+.++++.|.+... ..+ ....++++|.+.+|.++.- -..+..... ++.|++..|. +.
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~ 246 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LG 246 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cc
Confidence 55667777777777765311 222 2466677777777765521 122344444 5556666665 33
Q ss_pred cc-----CccccCCC-CCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCC
Q 001201 216 VI-----PPNLLSGL-SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1124)
Q Consensus 216 ~l-----p~~~i~~L-~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (1124)
.. .+. +..+ ..++++++..|.+.-.+. ......+..+++++.|.++.|.+
T Consensus 247 d~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~~~-------~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 247 DVGVEKLLPC-LSVLSETLRVLDLSRNSITEKGV-------RDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hHHHHHHHHH-hcccchhhhhhhhhcCCccccch-------HHHHHHHhhhHHHHHhhcccCcc
Confidence 22 111 3344 556777777776651111 12233455556666777766654
No 96
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=73.10 E-value=2.1 Score=27.06 Aligned_cols=17 Identities=29% Similarity=0.465 Sum_probs=10.7
Q ss_pred CCccEEEEcCCcCcccc
Q 001201 819 KNLTTLELWYCQRLMNL 835 (1124)
Q Consensus 819 ~~L~~L~i~~C~~L~~l 835 (1124)
++|++|+|++|+++++.
T Consensus 2 ~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 2 PNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCEeCCCCCCCcCHH
Confidence 45666666666666654
No 97
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=72.78 E-value=16 Score=30.71 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=40.5
Q ss_pred eEEEEEEeecc-hhHHHHHHhHhcCCCCeeEEE-------EeCCCCeEEEEEe-cCHHHHHHHHHHhCCc
Q 001201 1029 KKAVLKLEIHG-EKARQKAFSIVSKFTGVLSIL-------FDPKDKKMIVIGD-IDAVPVVRKLRKQLCA 1089 (1124)
Q Consensus 1029 ~~~~~~~~~~c-~~c~~~~~~~~~~~~gv~~v~-------~d~~~~~~~v~g~-~d~~~~~~~l~k~~~~ 1089 (1124)
+++||.|..-- +--.-.+-+.+++++||+-|. ++...-++||.|. .|-.++.+.+.+.|+.
T Consensus 6 RRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~ 75 (97)
T COG1888 6 RRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGA 75 (97)
T ss_pred eeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCe
Confidence 45555554222 223344556677888876543 3334458999997 9999999999998873
No 98
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=67.75 E-value=9.8 Score=46.56 Aligned_cols=61 Identities=15% Similarity=0.112 Sum_probs=53.6
Q ss_pred eecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe--cCHHHHHHHHHHhCCceEEEecC
Q 001201 1036 EIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD--IDAVPVVRKLRKQLCATELVSIG 1096 (1124)
Q Consensus 1036 ~~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~--~d~~~~~~~l~k~~~~~~~~~~~ 1096 (1124)
.|+|..|...+.+++++.+||.++++....+..+|.=+ ++|+.+.+.+...++.+++.+-.
T Consensus 2 gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied~gf~~~~~~~~ 64 (951)
T KOG0207|consen 2 GMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIEDMGFEASLLSDS 64 (951)
T ss_pred CccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhhcccceeeecccC
Confidence 58999999999999999999999999998887665443 89999999999989899887643
No 99
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.49 E-value=6.7 Score=24.89 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=8.6
Q ss_pred ccCcEEEccCCCCCcc
Q 001201 178 KKLEILSLVDSNIEQL 193 (1124)
Q Consensus 178 ~~L~~L~Ls~~~i~~l 193 (1124)
.+|++|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4555566666555433
No 100
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=59.79 E-value=5.8 Score=25.09 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=11.5
Q ss_pred cCcEEEccCCCCCccch
Q 001201 179 KLEILSLVDSNIEQLPE 195 (1124)
Q Consensus 179 ~L~~L~Ls~~~i~~lp~ 195 (1124)
+|++|++++|.+++||+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46667777777777764
No 101
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=54.22 E-value=81 Score=26.60 Aligned_cols=59 Identities=12% Similarity=0.038 Sum_probs=40.3
Q ss_pred EEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEE---ecCHHHHHHHHHHhCCc
Q 001201 1031 AVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIG---DIDAVPVVRKLRKQLCA 1089 (1124)
Q Consensus 1031 ~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g---~~d~~~~~~~l~k~~~~ 1089 (1124)
+.+.++ ++|..|...+.+.+...+|+....++....++.+.- ..++..+....++.+..
T Consensus 25 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 87 (92)
T TIGR02052 25 VTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYP 87 (92)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 345455 889999999999999999998888887777655442 13445444444443433
No 102
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=50.87 E-value=0.47 Score=55.29 Aligned_cols=156 Identities=21% Similarity=0.261 Sum_probs=90.6
Q ss_pred ccEEEecCCCCCCCCC---hhhhcCCCCCcEEEeecCCCcc-----CCcccCCC-CCCcEEEccCCCCCCc------ccc
Q 001201 110 LEFFCMSPRDHSIKIP---NHVFAGMSNLRGLALSNMQFLS-----LPSLFHLP-LNLQTLCLDRCALGDI------AII 174 (1124)
Q Consensus 110 L~~L~L~~n~~~~~~~---~~~f~~l~~Lr~L~Ls~~~i~~-----lp~~i~~l-~~Lr~L~L~~~~l~~l------~~i 174 (1124)
+..|.|.+|.+...-. ...+.....|..|++++|.+.. +-..+... ..|++|++..|.+... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7778888887653222 2345677888889999988762 11223333 5678888888876632 556
Q ss_pred cCcccCcEEEccCCCCCc-----cchhhh----CCCCccEEEecCCCCCCccC----ccccCCCCC-ccEEEeecccCcc
Q 001201 175 GNLKKLEILSLVDSNIEQ-----LPEEMA----QLTQLRLFDLSGCSKLKVIP----PNLLSGLSR-LEDLYMGNTSVKW 240 (1124)
Q Consensus 175 ~~L~~L~~L~Ls~~~i~~-----lp~~i~----~L~~L~~L~L~~~~~l~~lp----~~~i~~L~~-L~~L~l~~~~i~~ 240 (1124)
....+++.+|++.|.+.. ++..+. ...++++|++++|. ++... ..++...+. +.+|++..|.+.-
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 677888888888886631 233333 47778888888876 33111 011334444 5556666665540
Q ss_pred ccccccccCCCcChhhhcCC-CCCCEEEeecCCC
Q 001201 241 EFEGLNVGRSNASLQELKLL-SHLTTLEIQICDA 273 (1124)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 273 (1124)
. ........+..+ ..++.++++.|.+
T Consensus 248 ~-------g~~~L~~~l~~~~~~l~~l~l~~nsi 274 (478)
T KOG4308|consen 248 V-------GVEKLLPCLSVLSETLRVLDLSRNSI 274 (478)
T ss_pred H-------HHHHHHHHhcccchhhhhhhhhcCCc
Confidence 0 001112233334 4556666666664
No 103
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=41.42 E-value=12 Score=22.93 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=6.3
Q ss_pred ccCcEEEccCCCCC
Q 001201 178 KKLEILSLVDSNIE 191 (1124)
Q Consensus 178 ~~L~~L~Ls~~~i~ 191 (1124)
++|++|+|++|.|.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 44555555555543
No 104
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=39.14 E-value=25 Score=22.71 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=7.0
Q ss_pred CCcEEEccCCCCC
Q 001201 157 NLQTLCLDRCALG 169 (1124)
Q Consensus 157 ~Lr~L~L~~~~l~ 169 (1124)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 105
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=37.26 E-value=76 Score=26.84 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=34.4
Q ss_pred hcCCCCeeEEEEeCCC-CeEEEEEecCHHHHHHHHHHhCCceEEEec
Q 001201 1050 VSKFTGVLSILFDPKD-KKMIVIGDIDAVPVVRKLRKQLCATELVSI 1095 (1124)
Q Consensus 1050 ~~~~~gv~~v~~d~~~-~~~~v~g~~d~~~~~~~l~k~~~~~~~~~~ 1095 (1124)
+..++||.++..+... -.+.|.+..++.++++.+.+.+. +.-+.+
T Consensus 26 l~~~~~v~~v~~~~~~~~~i~l~~~~~~~~ll~~l~~~g~-I~~f~~ 71 (84)
T PF13732_consen 26 LEELPGVESVEQDGDGKLRIKLEDEETANELLQELIEKGI-IRSFEE 71 (84)
T ss_pred HhhCCCeEEEEEeCCcEEEEEECCcccHHHHHHHHHhCCC-eeEEEE
Confidence 6678999999986555 46777877889999999998776 544433
No 106
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=36.14 E-value=1.2e+02 Score=25.99 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=34.8
Q ss_pred HHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe-cCHHH---HHHHHHHhCC--ceEEEe
Q 001201 1043 RQKAFSIVSKFTGVLSILFDPKDKKMIVIGD-IDAVP---VVRKLRKQLC--ATELVS 1094 (1124)
Q Consensus 1043 ~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~-~d~~~---~~~~l~k~~~--~~~~~~ 1094 (1124)
...+.+++..+||++=-..|.+++|++|+=+ -+... .+++++..-+ .|.++-
T Consensus 19 ~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~~~~~~~~~i~~I~~l~GVlsa~lVY 76 (87)
T PRK10553 19 ISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIESVRNVEGVLAVSLVY 76 (87)
T ss_pred HHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeCChHHHHHHHHHHHcCCCceEEEEEE
Confidence 6788899999999999989888888666544 33344 4445554333 444443
No 107
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=33.86 E-value=1.9e+02 Score=24.36 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=31.4
Q ss_pred HHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe-cCHHHHHHHHHHh
Q 001201 1043 RQKAFSIVSKFTGVLSILFDPKDKKMIVIGD-IDAVPVVRKLRKQ 1086 (1124)
Q Consensus 1043 ~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~-~d~~~~~~~l~k~ 1086 (1124)
...+.+++.++|||+=-..|.+ +|++|+=+ -+...+.+.+++.
T Consensus 17 ~~~v~~~l~~~~gvEVh~~~~~-GKiVVtiE~~~~~~~~~~~~~i 60 (79)
T PF03927_consen 17 LEEVAEALAAIPGVEVHAVDED-GKIVVTIEAESSEEEVDLIDAI 60 (79)
T ss_dssp HHHHHHHHCCSTTEEEEEEETT-TEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEeeCCC-CeEEEEEEeCChHHHHHHHHHH
Confidence 5778899999999976667766 77666554 5666677766653
No 108
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=32.23 E-value=40 Score=28.46 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=25.2
Q ss_pred HhHhcCCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHH
Q 001201 1047 FSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRK 1085 (1124)
Q Consensus 1047 ~~~~~~~~gv~~v~~d~~~~~~~v~g~~d~~~~~~~l~k 1085 (1124)
++.+.+++=.......--.-++|+..+|.-++|.+++.-
T Consensus 53 mrhleklkipyefqygwlgvkitiksnvpndevtkkvsp 91 (138)
T PF05663_consen 53 MRHLEKLKIPYEFQYGWLGVKITIKSNVPNDEVTKKVSP 91 (138)
T ss_pred HHHHHhcCCCeeeeecceeEEEEEecCCCchHhhhccCc
Confidence 455655654455554444447889999988888776643
No 109
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=31.78 E-value=60 Score=26.60 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=22.5
Q ss_pred eEEEEEEeecchhH------HHHHHhHhcCCCCeeEEEE
Q 001201 1029 KKAVLKLEIHGEKA------RQKAFSIVSKFTGVLSILF 1061 (1124)
Q Consensus 1029 ~~~~~~~~~~c~~c------~~~~~~~~~~~~gv~~v~~ 1061 (1124)
.++.+.+.+...+| +..+++++..++||.+|++
T Consensus 34 ~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 34 GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 45666666655444 4889999999999999975
No 110
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=27.94 E-value=47 Score=26.36 Aligned_cols=35 Identities=9% Similarity=0.148 Sum_probs=18.9
Q ss_pred HHHHhHhcC---CCCeeEEEEeCCCCeEEEEEecCHHHH
Q 001201 1044 QKAFSIVSK---FTGVLSILFDPKDKKMIVIGDIDAVPV 1079 (1124)
Q Consensus 1044 ~~~~~~~~~---~~gv~~v~~d~~~~~~~v~g~~d~~~~ 1079 (1124)
.+|+++|.. +++- .|.+....+.|+++|.++-..-
T Consensus 2 ~~v~~~L~~~~~~~~~-~i~v~v~~g~v~L~G~v~s~~~ 39 (64)
T PF04972_consen 2 TKVRAALRADPWLPDS-NISVSVENGVVTLSGEVPSQEQ 39 (64)
T ss_dssp -----------CTT-T-TEEEEEECTEEEEEEEESSCHH
T ss_pred cccccccccccccCCC-eEEEEEECCEEEEEeeCcHHHH
Confidence 456666666 3444 5788888999999999855443
No 111
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=26.51 E-value=1.6e+02 Score=24.58 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=29.1
Q ss_pred ceeEEEEEEeecchhHHHHHHhHhcCCCCeeEEE
Q 001201 1027 RTKKAVLKLEIHGEKARQKAFSIVSKFTGVLSIL 1060 (1124)
Q Consensus 1027 ~~~~~~~~~~~~c~~c~~~~~~~~~~~~gv~~v~ 1060 (1124)
....+.+.+.+....=-..+++.|.+++||.+|.
T Consensus 46 ~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 46 GTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp TEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred CEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 3556788888888888899999999999999985
No 112
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.45 E-value=1.4e+02 Score=24.43 Aligned_cols=34 Identities=6% Similarity=0.166 Sum_probs=26.9
Q ss_pred eeEEEEEEeecchh-HHHHHHhHhcCCCCeeEEEE
Q 001201 1028 TKKAVLKLEIHGEK-ARQKAFSIVSKFTGVLSILF 1061 (1124)
Q Consensus 1028 ~~~~~~~~~~~c~~-c~~~~~~~~~~~~gv~~v~~ 1061 (1124)
...+.+.+...... --.++++++.+++||.+|.+
T Consensus 40 ~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 40 RANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred eEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 34556666667765 77999999999999999875
No 113
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=23.17 E-value=2.6e+02 Score=19.20 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=33.3
Q ss_pred eecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe--cCHHHHHHHHH
Q 001201 1036 EIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD--IDAVPVVRKLR 1084 (1124)
Q Consensus 1036 ~~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~--~d~~~~~~~l~ 1084 (1124)
.++|..|...+.......+|+...........+.+... .++..+...++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (63)
T cd00371 6 GMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIE 56 (63)
T ss_pred CeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHH
Confidence 47799999999988888899877777666666555433 24444433333
Done!