Query 001201
Match_columns 1124
No_of_seqs 729 out of 6228
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 16:10:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.3E-40 4.5E-45 417.5 29.8 497 348-944 244-760 (768)
2 3rgz_A Protein brassinosteroid 100.0 2E-38 6.9E-43 397.7 32.2 654 86-891 50-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 6.1E-37 2.1E-41 381.4 41.5 176 89-278 7-188 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-35 4.8E-40 369.1 42.3 540 71-753 11-575 (680)
5 3t6q_A CD180 antigen; protein- 100.0 3E-34 1E-38 352.3 38.4 178 89-280 15-198 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 6.4E-35 2.2E-39 358.2 31.5 181 88-280 13-200 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 7.7E-34 2.6E-38 348.6 34.4 189 70-273 17-216 (606)
8 3t6q_A CD180 antigen; protein- 100.0 7.3E-33 2.5E-37 339.9 36.8 529 110-777 14-557 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 7.9E-31 2.7E-35 332.3 39.2 526 71-726 11-559 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 5.2E-31 1.8E-35 334.0 34.1 171 89-274 7-187 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 5.1E-31 1.8E-35 321.3 31.4 145 91-239 12-162 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 1E-30 3.4E-35 318.7 33.0 187 71-272 14-211 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-30 6.4E-35 314.5 28.3 470 85-653 25-509 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 7.1E-29 2.4E-33 300.6 33.9 171 91-274 10-185 (549)
15 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-28 5.1E-33 304.0 30.5 180 89-280 34-220 (635)
16 2z7x_B TOLL-like receptor 1, v 100.0 2.4E-28 8.3E-33 293.6 28.6 143 89-238 3-150 (520)
17 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-27 5.7E-32 294.7 33.1 524 72-700 39-579 (635)
18 4ecn_A Leucine-rich repeat pro 100.0 9.7E-28 3.3E-32 297.3 24.8 176 86-277 323-611 (876)
19 4eco_A Uncharacterized protein 99.9 1.3E-27 4.5E-32 292.4 20.3 190 86-291 81-385 (636)
20 2z7x_B TOLL-like receptor 1, v 99.9 6.4E-27 2.2E-31 281.2 23.8 141 111-273 3-150 (520)
21 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.4E-26 2.5E-30 274.1 30.8 455 87-626 32-508 (562)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.1E-26 1.7E-30 275.5 28.3 149 106-273 29-181 (562)
23 4eco_A Uncharacterized protein 99.9 1.5E-26 5.3E-31 282.9 23.7 272 108-444 81-413 (636)
24 4ecn_A Leucine-rich repeat pro 99.9 2E-26 6.9E-31 285.5 21.6 37 108-145 323-360 (876)
25 1o6v_A Internalin A; bacterial 99.9 2.3E-25 7.8E-30 262.9 28.7 168 85-274 45-212 (466)
26 1o6v_A Internalin A; bacterial 99.9 1.4E-24 4.7E-29 256.3 30.8 348 106-600 44-391 (466)
27 3v47_A TOLL-like receptor 5B a 99.9 3E-24 1E-28 253.4 28.8 155 84-239 28-193 (455)
28 1jl5_A Outer protein YOPM; leu 99.9 4.3E-25 1.5E-29 257.7 20.8 148 105-277 8-169 (454)
29 3bz5_A Internalin-J, INLJ; leu 99.9 2.8E-23 9.5E-28 242.6 29.4 167 83-275 39-205 (457)
30 3bz5_A Internalin-J, INLJ; leu 99.9 5.8E-24 2E-28 248.4 23.4 264 106-450 40-303 (457)
31 1jl5_A Outer protein YOPM; leu 99.9 2.6E-24 8.7E-29 251.1 19.6 167 84-277 9-189 (454)
32 4fmz_A Internalin; leucine ric 99.9 2.5E-23 8.5E-28 235.8 25.4 174 83-276 41-214 (347)
33 4fmz_A Internalin; leucine ric 99.9 3.4E-23 1.2E-27 234.7 24.9 303 106-480 42-344 (347)
34 3o6n_A APL1; leucine-rich repe 99.9 9.8E-23 3.3E-27 234.7 25.1 154 105-274 42-199 (390)
35 2id5_A Lingo-1, leucine rich r 99.9 1.2E-22 4E-27 241.0 26.4 176 89-278 14-193 (477)
36 3o6n_A APL1; leucine-rich repe 99.9 9.4E-23 3.2E-27 234.8 24.3 302 84-480 43-350 (390)
37 3v47_A TOLL-like receptor 5B a 99.9 1.8E-22 6.3E-27 238.0 27.3 149 111-276 13-169 (455)
38 2id5_A Lingo-1, leucine rich r 99.9 1E-21 3.5E-26 232.9 27.8 305 71-442 18-329 (477)
39 3oja_B Anopheles plasmodium-re 99.9 3.8E-22 1.3E-26 242.7 24.1 282 106-443 49-334 (597)
40 3oja_B Anopheles plasmodium-re 99.9 7.1E-22 2.4E-26 240.3 25.1 235 131-442 49-287 (597)
41 2ft3_A Biglycan; proteoglycan, 99.8 1.6E-20 5.6E-25 210.8 18.7 121 88-212 35-158 (332)
42 4fcg_A Uncharacterized protein 99.8 1.4E-20 4.6E-25 210.2 17.3 174 85-273 80-265 (328)
43 1xku_A Decorin; proteoglycan, 99.8 1.9E-19 6.6E-24 201.9 25.2 148 87-239 32-184 (330)
44 1xku_A Decorin; proteoglycan, 99.8 1.7E-19 5.7E-24 202.5 24.5 170 86-273 52-228 (330)
45 4fcg_A Uncharacterized protein 99.8 1.2E-19 4E-24 202.6 21.1 131 132-275 80-220 (328)
46 2ft3_A Biglycan; proteoglycan, 99.8 1.3E-19 4.6E-24 203.3 20.7 283 71-443 40-330 (332)
47 2z80_A TOLL-like receptor 2, v 99.8 1.4E-19 5E-24 205.0 20.1 257 91-362 36-312 (353)
48 1ogq_A PGIP-2, polygalacturona 99.8 3.2E-20 1.1E-24 206.0 14.1 242 86-391 50-302 (313)
49 3ogk_B Coronatine-insensitive 99.8 4.9E-21 1.7E-25 234.1 7.7 169 405-594 340-524 (592)
50 1ozn_A Reticulon 4 receptor; N 99.8 2.6E-19 8.7E-24 196.3 20.0 194 71-278 18-218 (285)
51 3zyj_A Leucine-rich repeat-con 99.8 3.6E-19 1.2E-23 208.2 18.1 173 89-276 46-222 (440)
52 3zyi_A Leucine-rich repeat-con 99.8 4.7E-19 1.6E-23 208.0 18.5 175 88-277 56-234 (452)
53 2z66_A Variable lymphocyte rec 99.8 2E-19 7E-24 199.4 13.7 177 85-275 27-213 (306)
54 1ozn_A Reticulon 4 receptor; N 99.8 1.3E-18 4.4E-23 190.7 19.7 174 89-276 14-192 (285)
55 2z80_A TOLL-like receptor 2, v 99.8 1.4E-18 4.8E-23 196.8 20.5 155 106-276 29-189 (353)
56 2p1m_B Transport inhibitor res 99.8 2.2E-20 7.5E-25 228.5 4.0 63 530-594 455-517 (594)
57 3ogk_B Coronatine-insensitive 99.8 1.8E-19 6.2E-24 220.2 11.1 335 529-911 190-547 (592)
58 1z7x_W Ribonuclease inhibitor; 99.8 9.3E-21 3.2E-25 223.9 -0.4 158 108-273 3-182 (461)
59 3zyj_A Leucine-rich repeat-con 99.8 3E-18 1E-22 200.4 19.4 234 71-362 50-290 (440)
60 1ogq_A PGIP-2, polygalacturona 99.8 3.8E-19 1.3E-23 197.3 11.1 152 108-274 50-210 (313)
61 3g06_A SSPH2 (leucine-rich rep 99.8 2E-17 7E-22 198.4 26.7 158 87-278 41-198 (622)
62 3zyi_A Leucine-rich repeat-con 99.8 3.9E-18 1.3E-22 200.1 19.9 233 72-362 62-301 (452)
63 1p9a_G Platelet glycoprotein I 99.8 1.1E-17 3.7E-22 183.0 18.8 193 84-291 8-203 (290)
64 2o6q_A Variable lymphocyte rec 99.8 1.8E-17 6.3E-22 179.6 20.5 190 87-290 17-212 (270)
65 2z66_A Variable lymphocyte rec 99.8 1.2E-17 4E-22 185.2 18.8 236 89-337 10-260 (306)
66 2o6q_A Variable lymphocyte rec 99.8 3.6E-17 1.2E-21 177.4 21.6 189 71-273 23-217 (270)
67 3o53_A Protein LRIM1, AGAP0063 99.8 1.8E-19 6.1E-24 200.6 3.3 242 106-393 32-275 (317)
68 1z7x_W Ribonuclease inhibitor; 99.7 1.3E-19 4.5E-24 214.0 0.6 151 87-238 4-182 (461)
69 2p1m_B Transport inhibitor res 99.7 1.9E-18 6.5E-23 211.3 9.9 329 529-911 182-540 (594)
70 2xwt_C Thyrotropin receptor; s 99.7 1.9E-17 6.4E-22 176.1 15.8 198 76-290 23-233 (239)
71 1h6u_A Internalin H; cell adhe 99.7 4.6E-17 1.6E-21 179.9 19.4 190 84-294 39-228 (308)
72 3m19_A Variable lymphocyte rec 99.7 8E-17 2.7E-21 172.5 18.5 174 87-274 15-192 (251)
73 2z62_A TOLL-like receptor 4, v 99.7 4.5E-17 1.5E-21 177.4 16.8 197 83-293 25-234 (276)
74 2z62_A TOLL-like receptor 4, v 99.7 4.3E-17 1.5E-21 177.6 14.7 179 90-280 11-196 (276)
75 1p9a_G Platelet glycoprotein I 99.7 6.4E-17 2.2E-21 176.8 15.7 159 106-280 8-167 (290)
76 1wwl_A Monocyte differentiatio 99.7 2.6E-18 8.9E-23 190.6 3.3 34 325-362 274-307 (312)
77 3g06_A SSPH2 (leucine-rich rep 99.7 9.5E-16 3.3E-20 184.0 25.8 250 69-390 45-294 (622)
78 2xwt_C Thyrotropin receptor; s 99.7 8.6E-17 2.9E-21 171.0 14.0 170 93-278 18-197 (239)
79 3rfs_A Internalin B, repeat mo 99.7 2.9E-16 1E-20 170.3 17.7 177 83-274 38-218 (272)
80 1h6u_A Internalin H; cell adhe 99.7 3.2E-16 1.1E-20 173.1 17.9 188 71-279 48-235 (308)
81 1h6t_A Internalin B; cell adhe 99.7 1.4E-16 5E-21 174.2 14.9 174 83-277 43-216 (291)
82 3o53_A Protein LRIM1, AGAP0063 99.7 1.6E-17 5.5E-22 184.7 7.3 189 85-295 33-226 (317)
83 3oja_A Leucine-rich immune mol 99.7 7E-17 2.4E-21 190.2 11.9 150 108-276 34-184 (487)
84 3rfs_A Internalin B, repeat mo 99.7 3.3E-16 1.1E-20 169.8 14.7 183 71-273 48-234 (272)
85 3oja_A Leucine-rich immune mol 99.7 7.9E-17 2.7E-21 189.8 9.7 189 85-295 33-226 (487)
86 3m19_A Variable lymphocyte rec 99.7 1.9E-15 6.6E-20 161.7 18.8 166 71-239 21-192 (251)
87 4ay9_X Follicle-stimulating ho 99.6 3.6E-15 1.2E-19 168.2 18.3 130 89-220 12-147 (350)
88 4ay9_X Follicle-stimulating ho 99.6 3.8E-15 1.3E-19 168.0 18.3 197 70-280 15-221 (350)
89 3e6j_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 156.8 16.3 149 88-239 21-172 (229)
90 1m9s_A Internalin B; cell inva 99.6 1.3E-15 4.4E-20 182.7 14.3 175 83-278 40-214 (605)
91 2v9t_B SLIT homolog 2 protein 99.6 4E-15 1.4E-19 155.3 14.8 148 89-239 14-165 (220)
92 2o6s_A Variable lymphocyte rec 99.6 2.8E-15 9.7E-20 155.4 13.6 164 89-273 10-177 (208)
93 1h6t_A Internalin B; cell adhe 99.6 3E-15 1E-19 163.7 14.1 181 93-294 31-211 (291)
94 2v70_A SLIT-2, SLIT homolog 2 99.6 5.6E-15 1.9E-19 154.2 14.5 149 89-239 14-166 (220)
95 4glp_A Monocyte differentiatio 99.6 5.4E-16 1.8E-20 171.9 7.1 79 134-212 92-180 (310)
96 1wwl_A Monocyte differentiatio 99.6 4.6E-15 1.6E-19 164.4 14.6 189 85-290 94-303 (312)
97 4glp_A Monocyte differentiatio 99.6 6.2E-15 2.1E-19 163.3 14.0 192 86-293 91-304 (310)
98 4ezg_A Putative uncharacterize 99.6 1.3E-14 4.6E-19 148.7 14.5 150 83-239 41-194 (197)
99 1xeu_A Internalin C; cellular 99.6 1.9E-15 6.4E-20 162.5 8.2 167 87-275 20-186 (263)
100 2ast_B S-phase kinase-associat 99.6 2.5E-15 8.7E-20 168.9 9.0 147 110-271 49-205 (336)
101 2xot_A Amphoterin-induced prot 99.6 1E-14 3.4E-19 165.2 13.7 171 89-273 21-201 (361)
102 4ezg_A Putative uncharacterize 99.6 1.3E-14 4.6E-19 148.6 12.6 150 106-274 42-194 (197)
103 1xeu_A Internalin C; cellular 99.5 2.4E-14 8.3E-19 153.8 14.2 149 82-239 37-185 (263)
104 2ca6_A RAN GTPase-activating p 99.5 1E-15 3.6E-20 175.5 3.1 179 86-273 32-256 (386)
105 2o6s_A Variable lymphocyte rec 99.5 3.4E-14 1.2E-18 147.2 14.0 157 73-239 16-178 (208)
106 2v9t_B SLIT homolog 2 protein 99.5 5.2E-14 1.8E-18 146.8 14.6 147 111-273 14-164 (220)
107 3cvr_A Invasion plasmid antige 99.5 9.1E-14 3.1E-18 164.6 18.3 173 87-291 60-238 (571)
108 2ast_B S-phase kinase-associat 99.5 2.9E-15 9.9E-20 168.5 4.5 173 87-272 48-233 (336)
109 2xot_A Amphoterin-induced prot 99.5 3.2E-14 1.1E-18 161.0 12.5 168 69-239 23-202 (361)
110 1m9s_A Internalin B; cell inva 99.5 2.1E-14 7.1E-19 172.2 11.4 184 89-293 24-207 (605)
111 2v70_A SLIT-2, SLIT homolog 2 99.5 9.5E-14 3.3E-18 144.8 14.2 147 111-273 14-165 (220)
112 3e6j_A Variable lymphocyte rec 99.5 1.2E-13 4.3E-18 145.0 14.9 148 110-274 21-172 (229)
113 3goz_A Leucine-rich repeat-con 99.5 6.3E-15 2.1E-19 167.1 3.9 36 110-146 24-64 (362)
114 3cvr_A Invasion plasmid antige 99.5 4.2E-13 1.4E-17 158.9 18.7 174 69-275 64-244 (571)
115 2ell_A Acidic leucine-rich nuc 99.5 1.3E-13 4.3E-18 137.4 11.7 135 132-278 23-164 (168)
116 2ca6_A RAN GTPase-activating p 99.4 1.8E-14 6.2E-19 165.2 3.4 119 146-273 22-171 (386)
117 2ell_A Acidic leucine-rich nuc 99.4 3.2E-13 1.1E-17 134.5 10.1 130 86-219 24-164 (168)
118 1dce_A Protein (RAB geranylger 99.4 1.1E-15 3.8E-20 182.2 -10.1 189 85-288 348-565 (567)
119 2je0_A Acidic leucine-rich nuc 99.4 4.2E-13 1.4E-17 130.5 9.0 126 132-269 16-148 (149)
120 3goz_A Leucine-rich repeat-con 99.4 1.1E-13 3.8E-18 156.8 5.4 156 113-277 3-183 (362)
121 2wfh_A SLIT homolog 2 protein 99.4 1.2E-12 4.1E-17 133.1 12.4 123 112-239 14-139 (193)
122 2je0_A Acidic leucine-rich nuc 99.4 3.8E-13 1.3E-17 130.9 6.8 102 130-233 39-147 (149)
123 4b8c_D Glucose-repressible alc 99.3 1E-12 3.5E-17 161.9 10.0 151 85-239 172-329 (727)
124 1w8a_A SLIT protein; signaling 99.3 3.3E-12 1.1E-16 129.9 12.1 122 89-212 11-137 (192)
125 1w8a_A SLIT protein; signaling 99.3 3.9E-12 1.3E-16 129.4 12.2 123 136-272 11-137 (192)
126 1a9n_A U2A', U2A'; complex (nu 99.3 1.3E-12 4.6E-17 130.9 8.6 134 130-273 16-152 (176)
127 2wfh_A SLIT homolog 2 protein 99.3 6.8E-12 2.3E-16 127.5 13.5 121 89-212 13-137 (193)
128 1a9n_A U2A', U2A'; complex (nu 99.3 5.7E-13 2E-17 133.7 4.4 131 105-239 16-153 (176)
129 2o6r_A Variable lymphocyte rec 99.3 2.3E-11 7.9E-16 122.0 14.1 105 134-239 29-137 (177)
130 2o6r_A Variable lymphocyte rec 99.3 2.3E-11 7.7E-16 122.1 13.5 122 89-212 10-135 (177)
131 4b8c_D Glucose-repressible alc 99.2 5E-12 1.7E-16 155.8 8.1 131 106-239 222-354 (727)
132 1dce_A Protein (RAB geranylger 99.2 3E-11 1E-15 143.9 11.8 123 134-268 442-567 (567)
133 1ds9_A Outer arm dynein; leuci 99.2 1.6E-13 5.6E-18 140.6 -7.2 136 128-267 43-180 (198)
134 3sb4_A Hypothetical leucine ri 99.2 8.6E-11 2.9E-15 131.0 12.2 187 85-287 48-325 (329)
135 1ds9_A Outer arm dynein; leuci 99.1 4.4E-13 1.5E-17 137.4 -6.9 147 87-239 24-185 (198)
136 2r9u_A Variable lymphocyte rec 99.1 1.7E-10 6E-15 114.8 11.2 101 136-239 15-118 (174)
137 3g39_A Variable lymphocyte rec 99.1 2.1E-10 7.3E-15 113.8 11.0 102 135-239 11-115 (170)
138 2r9u_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 112.8 11.5 101 89-191 15-118 (174)
139 3iwl_A Copper transport protei 99.1 3.2E-10 1.1E-14 92.7 8.3 67 1028-1095 1-67 (68)
140 3g39_A Variable lymphocyte rec 99.1 5.8E-10 2E-14 110.6 11.2 99 89-189 12-113 (170)
141 1cc8_A Protein (metallochapero 99.0 2.5E-09 8.7E-14 88.9 9.8 68 1027-1094 3-71 (73)
142 2crl_A Copper chaperone for su 98.9 8.2E-09 2.8E-13 91.0 11.9 75 1025-1099 15-89 (98)
143 3sb4_A Hypothetical leucine ri 98.9 4.4E-09 1.5E-13 117.1 10.4 168 85-268 100-328 (329)
144 2ifg_A High affinity nerve gro 98.7 1.6E-08 5.5E-13 113.6 10.0 100 137-239 12-116 (347)
145 3un9_A NLR family member X1; l 98.7 7.8E-10 2.7E-14 124.5 -1.1 88 178-273 155-251 (372)
146 4a4j_A Pacszia, cation-transpo 98.7 3.4E-08 1.2E-12 80.9 8.5 64 1029-1092 2-68 (69)
147 3dxs_X Copper-transporting ATP 98.7 5.3E-08 1.8E-12 81.0 9.5 67 1028-1094 1-71 (74)
148 4fdw_A Leucine rich hypothetic 98.7 2.3E-07 8E-12 105.3 17.4 231 86-362 113-356 (401)
149 4fdw_A Leucine rich hypothetic 98.7 1.6E-07 5.3E-12 106.8 15.6 186 87-294 158-356 (401)
150 3un9_A NLR family member X1; l 98.7 5.4E-10 1.9E-14 125.8 -4.8 155 84-239 70-252 (372)
151 3fry_A Probable copper-exporti 98.7 3.1E-08 1.1E-12 82.1 6.4 66 1027-1094 3-69 (73)
152 2ifg_A High affinity nerve gro 98.6 6.2E-08 2.1E-12 108.8 10.0 97 113-212 13-114 (347)
153 2xmw_A PACS-N, cation-transpor 98.4 1.7E-06 5.8E-11 70.9 9.9 66 1027-1092 1-69 (71)
154 2roe_A Heavy metal binding pro 98.4 3.6E-07 1.2E-11 73.9 5.5 61 1032-1092 3-64 (66)
155 4fs7_A Uncharacterized protein 98.4 4.9E-06 1.7E-10 94.9 16.5 131 98-236 59-195 (394)
156 2k2p_A Uncharacterized protein 98.3 4.7E-07 1.6E-11 77.2 5.2 65 1026-1090 19-84 (85)
157 4fs7_A Uncharacterized protein 98.3 5.4E-06 1.8E-10 94.5 15.6 310 123-507 61-376 (394)
158 2xmm_A SSR2857 protein, ATX1; 98.3 5.6E-07 1.9E-11 72.1 5.2 60 1031-1090 3-63 (64)
159 2l3m_A Copper-ION-binding prot 98.3 1.8E-06 6E-11 70.9 8.3 64 1027-1090 3-70 (71)
160 1qup_A Superoxide dismutase 1 98.3 1.5E-06 5.3E-11 88.3 9.4 69 1029-1097 6-74 (222)
161 1aw0_A Menkes copper-transport 98.2 5.2E-06 1.8E-10 68.2 8.7 64 1029-1092 3-70 (72)
162 1y3j_A Copper-transporting ATP 98.2 3.8E-06 1.3E-10 70.2 7.9 67 1027-1093 1-71 (77)
163 1mwy_A ZNTA; open-faced beta-s 98.2 7.8E-06 2.7E-10 67.4 9.4 64 1028-1091 2-67 (73)
164 1jk9_B CCS, copper chaperone f 98.2 4E-06 1.4E-10 86.7 9.0 70 1029-1098 7-76 (249)
165 1osd_A MERP, hypothetical prot 98.2 6.6E-06 2.2E-10 67.6 8.6 65 1028-1092 2-70 (72)
166 3cjk_B Copper-transporting ATP 98.1 1.1E-05 3.8E-10 66.9 10.0 65 1030-1094 3-71 (75)
167 1yjr_A Copper-transporting ATP 98.1 5.4E-06 1.8E-10 68.8 7.6 65 1028-1092 3-71 (75)
168 1kvi_A Copper-transporting ATP 98.1 4.4E-06 1.5E-10 70.2 7.1 68 1026-1093 5-76 (79)
169 2g9o_A Copper-transporting ATP 98.1 7.4E-06 2.5E-10 70.8 8.5 64 1030-1093 4-74 (90)
170 2ra8_A Uncharacterized protein 98.1 1.7E-06 5.8E-11 96.2 5.1 178 86-273 107-319 (362)
171 2qif_A Copper chaperone COPZ; 98.1 8.7E-06 3E-10 65.9 8.0 63 1028-1090 1-67 (69)
172 1fvq_A Copper-transporting ATP 98.1 8.9E-06 3.1E-10 66.7 7.9 65 1030-1094 3-70 (72)
173 2aj0_A Probable cadmium-transp 98.1 6.9E-06 2.4E-10 67.3 6.7 62 1027-1092 1-63 (71)
174 1q8l_A Copper-transporting ATP 98.0 8.5E-06 2.9E-10 69.4 7.3 66 1028-1093 8-77 (84)
175 1cpz_A Protein (COPZ); copper 98.0 9.9E-06 3.4E-10 65.6 7.3 61 1032-1092 3-67 (68)
176 2ofg_X Zinc-transporting ATPas 98.0 1.5E-05 5.1E-10 72.0 8.9 67 1026-1092 5-75 (111)
177 3e4g_A ATP synthase subunit S, 98.0 2.8E-06 9.5E-11 82.5 4.0 19 639-657 137-155 (176)
178 1yg0_A COP associated protein; 98.0 1.5E-05 5E-10 64.0 7.2 59 1031-1089 3-64 (66)
179 1opz_A Potential copper-transp 98.0 1.9E-05 6.4E-10 65.5 7.8 64 1028-1091 5-72 (76)
180 2kt2_A Mercuric reductase; nme 97.9 1.3E-05 4.6E-10 65.1 6.5 60 1032-1091 3-65 (69)
181 3e4g_A ATP synthase subunit S, 97.9 6.8E-06 2.3E-10 79.7 5.3 18 817-834 83-100 (176)
182 1io0_A Tropomodulin; LRR prote 97.9 3.1E-06 1.1E-10 84.8 2.8 80 129-208 32-128 (185)
183 2ldi_A Zinc-transporting ATPas 97.9 1.9E-05 6.6E-10 64.3 7.1 63 1028-1090 2-68 (71)
184 4gt6_A Cell surface protein; l 97.9 0.0006 2E-08 77.4 22.0 155 99-272 52-216 (394)
185 2kkh_A Putative heavy metal tr 97.9 3.4E-05 1.2E-09 67.4 9.0 68 1026-1093 13-84 (95)
186 2kyz_A Heavy metal binding pro 97.9 9.3E-06 3.2E-10 65.6 4.8 59 1031-1091 3-62 (67)
187 1jww_A Potential copper-transp 97.9 3.5E-05 1.2E-09 64.7 8.3 65 1028-1092 2-70 (80)
188 2a5y_B CED-4; apoptosis; HET: 97.9 2.6E-06 9E-11 101.4 0.9 59 4-66 407-472 (549)
189 4gt6_A Cell surface protein; l 97.9 0.00043 1.5E-08 78.7 19.3 110 123-236 53-170 (394)
190 2ra8_A Uncharacterized protein 97.9 1.6E-05 5.4E-10 88.4 7.2 218 16-239 43-320 (362)
191 1io0_A Tropomodulin; LRR prote 97.8 7.7E-06 2.6E-10 81.8 3.4 117 149-274 29-164 (185)
192 1p6t_A Potential copper-transp 97.7 5.9E-05 2E-09 72.6 7.0 65 1029-1093 74-142 (151)
193 2ew9_A Copper-transporting ATP 97.6 8.6E-05 2.9E-09 71.2 7.4 64 1029-1092 80-147 (149)
194 2ew9_A Copper-transporting ATP 97.6 0.00013 4.3E-09 70.0 8.5 68 1026-1093 1-72 (149)
195 3rw6_A Nuclear RNA export fact 97.6 3.9E-05 1.3E-09 80.6 4.7 61 131-191 168-233 (267)
196 2rop_A Copper-transporting ATP 97.5 0.00019 6.6E-09 72.8 9.1 66 1029-1094 122-191 (202)
197 3rw6_A Nuclear RNA export fact 97.5 8.5E-06 2.9E-10 85.6 -2.0 40 154-193 168-211 (267)
198 1p6t_A Potential copper-transp 96.8 0.0022 7.5E-08 61.3 7.7 62 1028-1089 5-70 (151)
199 2rop_A Copper-transporting ATP 96.8 0.0018 6.3E-08 65.5 7.4 60 1027-1086 18-81 (202)
200 3j09_A COPA, copper-exporting 96.2 0.0084 2.9E-07 73.0 9.1 60 1031-1090 4-67 (723)
201 4h09_A Hypothetical leucine ri 96.1 0.021 7.2E-07 64.1 11.5 130 124-269 208-341 (379)
202 4h09_A Hypothetical leucine ri 96.1 0.021 7.3E-07 64.1 11.4 125 106-236 215-343 (379)
203 3rfe_A Platelet glycoprotein I 94.9 0.04 1.4E-06 50.7 6.3 35 134-168 32-67 (130)
204 3rfe_A Platelet glycoprotein I 94.7 0.032 1.1E-06 51.4 5.1 56 181-239 11-68 (130)
205 1pgv_A TMD-1, tropomodulin TMD 94.5 0.026 9E-07 55.6 4.5 62 130-191 38-111 (197)
206 1pgv_A TMD-1, tropomodulin TMD 94.1 0.023 7.7E-07 56.1 2.9 105 107-211 40-167 (197)
207 1vt4_I APAF-1 related killer D 90.6 0.13 4.4E-06 63.4 3.6 46 3-59 392-437 (1221)
208 3sfz_A APAF-1, apoptotic pepti 87.8 0.3 1E-05 64.4 4.6 39 27-65 412-452 (1249)
209 3bpd_A Uncharacterized protein 85.8 1.9 6.4E-05 35.7 6.3 61 1028-1088 6-74 (100)
210 2x3d_A SSO6206; unknown functi 83.2 5.5 0.00019 32.8 8.0 62 1027-1088 3-73 (96)
211 2raq_A Conserved protein MTH88 82.6 6.2 0.00021 32.7 8.1 61 1028-1088 6-74 (97)
212 1z6t_A APAF-1, apoptotic prote 70.7 2.7 9.2E-05 49.9 4.3 38 26-63 411-450 (591)
213 2jsx_A Protein NAPD; TAT, proo 51.6 42 0.0014 28.2 7.0 55 1028-1085 7-62 (95)
214 2cpq_A FragIle X mental retard 49.5 31 0.0011 28.7 5.7 36 1043-1079 33-68 (91)
215 3gzb_A Putative snoal-like pol 27.3 51 0.0018 28.9 3.6 32 1052-1083 119-151 (154)
216 3cq1_A Putative uncharacterize 22.5 50 0.0017 28.2 2.8 35 1030-1064 42-82 (103)
217 2jsx_A Protein NAPD; TAT, proo 20.4 1.5E+02 0.0052 24.8 5.3 34 1029-1062 42-75 (95)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-40 Score=417.55 Aligned_cols=497 Identities=13% Similarity=0.018 Sum_probs=270.2
Q ss_pred ccccccceeeeccCCCeeEEeeCCcccccccccccceeecccccccccccccccCccccCCccEEEEccCCCcCcccchh
Q 001201 348 EGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFS 427 (1124)
Q Consensus 348 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~ 427 (1124)
..+++|++|++++|.....+ +...+++|++|+++++.-...+.. .....+++|++|++++|. ++...+ .
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~-------~~~~l~~L~~L~L~~n~l~~~ip~--~~~~~~~~L~~L~Ls~n~-l~~~~p-~ 312 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPI-------PPLPLKSLQYLSLAENKFTGEIPD--FLSGACDTLTGLDLSGNH-FYGAVP-P 312 (768)
T ss_dssp TTCSSCCEEECCSSCCEESC-------CCCCCTTCCEEECCSSEEEESCCC--CSCTTCTTCSEEECCSSE-EEECCC-G
T ss_pred hcCCCCCEEECCCCcccCcc-------CccccCCCCEEECcCCccCCccCH--HHHhhcCcCCEEECcCCc-CCCccc-h
Confidence 34555556666555422111 111455666666665431111110 111235889999999864 443333 3
Q ss_pred hhhccCcccEEecccccccchhccccccCCcccCcccccccCccCEEeecCCCcccccccccccchhccc-ccceecccC
Q 001201 428 FVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQT-RLKELSTHT 506 (1124)
Q Consensus 428 ~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~L~~L~l~~ 506 (1124)
.+..+++|++|++++|.-...++.. ....+++|+.|+++++.-...++. .+..++ +|+.|++++
T Consensus 313 ~~~~l~~L~~L~L~~n~l~~~ip~~-----------~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~~L~~L~Ls~ 377 (768)
T 3rgz_A 313 FFGSCSLLESLALSSNNFSGELPMD-----------TLLKMRGLKVLDLSFNEFSGELPE----SLTNLSASLLTLDLSS 377 (768)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCHH-----------HHTTCTTCCEEECCSSEEEECCCT----THHHHTTTCSEEECCS
T ss_pred HHhcCCCccEEECCCCcccCcCCHH-----------HHhcCCCCCEEeCcCCccCccccH----HHHhhhcCCcEEEccC
Confidence 4788899999999886433344310 134678888888888754334443 244454 778888877
Q ss_pred CCcee-ecccccCcccccccccccccccceeeecccccccccccCcccccCCCccEEEEecCCCccccCcchhhhhccCC
Q 001201 507 LPREV-ILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQL 585 (1124)
Q Consensus 507 ~~~l~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L 585 (1124)
|.... ++.. .....+++|++|++++|.+....+..+. .+++|+.|++++| .++...| ..+..+++|
T Consensus 378 N~l~~~~~~~---------~~~~~~~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N-~l~~~~p-~~l~~l~~L 444 (768)
T 3rgz_A 378 NNFSGPILPN---------LCQNPKNTLQELYLQNNGFTGKIPPTLS--NCSELVSLHLSFN-YLSGTIP-SSLGSLSKL 444 (768)
T ss_dssp SEEEEECCTT---------TTCSTTCCCCEEECCSSEEEEECCGGGG--GCTTCCEEECCSS-EEESCCC-GGGGGCTTC
T ss_pred CCcCCCcChh---------hhhcccCCccEEECCCCccccccCHHHh--cCCCCCEEECcCC-cccCccc-HHHhcCCCC
Confidence 74321 1100 0001256677777777776544443333 3677777777774 4544334 335667777
Q ss_pred CEEEEeccccccceecccccccccceeecCccceeccccCcccceecCCCccCCCCcccEEEEecCCcceeecccccccc
Q 001201 586 EHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQ 665 (1124)
Q Consensus 586 ~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~ 665 (1124)
+.|++++|.--..++.... .+++|+.|+++++.-...++... ..+++|+.|++++|.--..+|...
T Consensus 445 ~~L~L~~n~l~~~~p~~~~--------~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p~~~---- 510 (768)
T 3rgz_A 445 RDLKLWLNMLEGEIPQELM--------YVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPKWI---- 510 (768)
T ss_dssp CEEECCSSCCCSCCCGGGG--------GCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGG----
T ss_pred CEEECCCCcccCcCCHHHc--------CCCCceEEEecCCcccCcCCHHH--hcCCCCCEEEccCCccCCcCChHH----
Confidence 7777777762223333211 45677777777765433333322 246677777777764333444221
Q ss_pred cccCCccccccccceeeeeeecCCceEEeeccccccccccccCCccccccccEEEEeeCCCc-ccchHHHhhcCCCcEEE
Q 001201 666 EINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESE-NFRIGFLERFHNLEKLE 744 (1124)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l-~~~~~~l~~l~~L~~L~ 744 (1124)
..+++|+.|++++|.+....+..+ ..+++|+.|++++|+.. .+|..... ...+..+.
T Consensus 511 -------------------~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~~~~~~~ 568 (768)
T 3rgz_A 511 -------------------GRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPAAMFK-QSGKIAAN 568 (768)
T ss_dssp -------------------GGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESBCCGGGGT-TTTCBCCS
T ss_pred -------------------hcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCccCCcCChHHhc-ccchhhhh
Confidence 345667777777776654322222 34566666666666654 44443332 22222111
Q ss_pred EE-cceeeEEccCh----------------hhhhhhhhccccceEeccCcccccccccCCCCcccccCcccEEEEeccCC
Q 001201 745 LR-WSSYKEIFSNE----------------EIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCEN 807 (1124)
Q Consensus 745 i~-c~~l~~l~~~~----------------~~~~~~~~l~~L~~L~l~~~~~L~~i~~~~~~~~~~l~~L~~L~i~~c~~ 807 (1124)
+. +..+..+.... .....+..++.++.+.+.. . .+.+..+.....+++|++|+++++.-
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~---~~~g~~~~~~~~l~~L~~LdLs~N~l 644 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS-R---VYGGHTSPTFDNNGSMMFLDMSYNML 644 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS-C---EEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhcccccccccccc-c---eecccCchhhhccccccEEECcCCcc
Confidence 11 11111110000 0000111112222222211 0 01111122345678999999999876
Q ss_pred cccccCCccccCCccEEEEcCCcCccccchhHHhhccCCccEEEEecccchhhhhccCcccccccccccccceeecccCC
Q 001201 808 LINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLE 887 (1124)
Q Consensus 808 l~~l~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 887 (1124)
-..+|..++.+++|+.|++++|.--..+| ..+..+++|+.|+++++.--..++.. ...+++|+.|++++++
T Consensus 645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip--~~l~~L~~L~~LdLs~N~l~g~ip~~-------l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 645 SGYIPKEIGSMPYLFILNLGHNDISGSIP--DEVGDLRGLNILDLSSNKLDGRIPQA-------MSALTMLTEIDLSNNN 715 (768)
T ss_dssp BSCCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCEECCCGG-------GGGCCCCSEEECCSSE
T ss_pred cccCCHHHhccccCCEEeCcCCccCCCCC--hHHhCCCCCCEEECCCCcccCcCChH-------HhCCCCCCEEECcCCc
Confidence 66788889999999999999986444564 45678999999999998643333322 2258899999999988
Q ss_pred CcccccCCCccccCCCccEEEEcccCCcccCCCCCcCCCCccEEEeccCCccccccC
Q 001201 888 NLTSFCSGNYTLKFPSLEDLFVIECPKMKIFSHRVLSTPRLREVRQNWGLYKGCWEG 944 (1124)
Q Consensus 888 ~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~~p~L~~~~~~~~~~~w~~~~ 944 (1124)
--..+|.++ .+.++....+.++|.+.-.|. . .|....+++|++++
T Consensus 716 l~g~iP~~~---~~~~~~~~~~~gN~~Lcg~~l--------~-~C~~~~~~~~~~~~ 760 (768)
T 3rgz_A 716 LSGPIPEMG---QFETFPPAKFLNNPGLCGYPL--------P-RCDPSNADGYAHHQ 760 (768)
T ss_dssp EEEECCSSS---SGGGSCGGGGCSCTEEESTTS--------C-CCCSCC--------
T ss_pred ccccCCCch---hhccCCHHHhcCCchhcCCCC--------c-CCCCCccCCCCCCC
Confidence 777888765 344555556778888765442 2 36677899999994
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-38 Score=397.73 Aligned_cols=654 Identities=15% Similarity=0.030 Sum_probs=330.9
Q ss_pred CCcCEEEeecCCCcc----CCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCc-cCCc--ccCCCCC
Q 001201 86 KNCPTIFLHDCKHWE----VPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPS--LFHLPLN 157 (1124)
Q Consensus 86 ~~lr~L~l~~n~i~~----l~~~~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~-~lp~--~i~~l~~ 157 (1124)
.+++.|+++++.+.. +++.+ .++.|+.++++.+.+. .+|. .|.++++|++|+|++|.+. .+|. .++.+++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCC-CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCch-hhccCCCCCEEECCCCcCCCcCCChHHHhCCCC
Confidence 456677777666543 44333 5666666666665443 2332 2466777777777777665 3455 6677777
Q ss_pred CcEEEccCCCCCCc---ccccCcccCcEEEccCCCCCccc-hh---hhCCCCccEEEecCCCCCCccCccccCCCCCccE
Q 001201 158 LQTLCLDRCALGDI---AIIGNLKKLEILSLVDSNIEQLP-EE---MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLED 230 (1124)
Q Consensus 158 Lr~L~L~~~~l~~l---~~i~~L~~L~~L~Ls~~~i~~lp-~~---i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~ 230 (1124)
||+|+|++|.+... ..++++++|++|++++|.+...+ .. ++++++|++|++++|. +..... ++.+++|++
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~ 204 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD--VSRCVNLEF 204 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB--CTTCTTCCE
T ss_pred CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccCC--cccCCcCCE
Confidence 77777777765422 22366777777777777666443 33 5667777777777766 443332 466777777
Q ss_pred EEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEEeCCcccccCCCCCceEEEE
Q 001201 231 LYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKL 310 (1124)
Q Consensus 231 L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l 310 (1124)
|++++|.+. ...+ .++++++|++|++++|.+...
T Consensus 205 L~Ls~n~l~-----------~~~~-~l~~l~~L~~L~Ls~n~l~~~---------------------------------- 238 (768)
T 3rgz_A 205 LDVSSNNFS-----------TGIP-FLGDCSALQHLDISGNKLSGD---------------------------------- 238 (768)
T ss_dssp EECCSSCCC-----------SCCC-BCTTCCSCCEEECCSSCCCSC----------------------------------
T ss_pred EECcCCcCC-----------CCCc-ccccCCCCCEEECcCCcCCCc----------------------------------
Confidence 777776654 1122 266667777777776665311
Q ss_pred eccccchhHHHHhhcccceeeccccCCccccccccccccccccceeeeccCCCeeEEeeCCcccccccccccceeecccc
Q 001201 311 KLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNL 390 (1124)
Q Consensus 311 ~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~ 390 (1124)
++..+..+++|+.|+++++.... ..+. ..+++|++|++++|.....++.. ....+++|+.|+++++
T Consensus 239 ------~~~~l~~l~~L~~L~Ls~n~l~~-~~~~---~~l~~L~~L~L~~n~l~~~ip~~----~~~~~~~L~~L~Ls~n 304 (768)
T 3rgz_A 239 ------FSRAISTCTELKLLNISSNQFVG-PIPP---LPLKSLQYLSLAENKFTGEIPDF----LSGACDTLTGLDLSGN 304 (768)
T ss_dssp ------HHHHTTTCSSCCEEECCSSCCEE-SCCC---CCCTTCCEEECCSSEEEESCCCC----SCTTCTTCSEEECCSS
T ss_pred ------ccHHHhcCCCCCEEECCCCcccC-ccCc---cccCCCCEEECcCCccCCccCHH----HHhhcCcCCEEECcCC
Confidence 11222233444444444432211 1111 13445555555555321111110 0111245555555543
Q ss_pred cccccccccccCccccCCccEEEEccCCCcC-cccchhhhhccCcccEEecccccccchhccccccCCcccCcccccccC
Q 001201 391 IHLEKICLGQLRAESFYKLKIIKVRNCDKLK-NIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFS 469 (1124)
Q Consensus 391 ~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~-~l~~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~ 469 (1124)
. +... .+...+.+++|++|++++|. +. .+|. ..+..+++|++|++++|.-...++. ....++
T Consensus 305 ~-l~~~--~p~~~~~l~~L~~L~L~~n~-l~~~ip~-~~l~~l~~L~~L~Ls~n~l~~~~p~------------~l~~l~ 367 (768)
T 3rgz_A 305 H-FYGA--VPPFFGSCSLLESLALSSNN-FSGELPM-DTLLKMRGLKVLDLSFNEFSGELPE------------SLTNLS 367 (768)
T ss_dssp E-EEEC--CCGGGGGCTTCCEEECCSSE-EEEECCH-HHHTTCTTCCEEECCSSEEEECCCT------------THHHHT
T ss_pred c-CCCc--cchHHhcCCCccEEECCCCc-ccCcCCH-HHHhcCCCCCEEeCcCCccCccccH------------HHHhhh
Confidence 2 1111 01112345555555555533 22 2222 2345555555555555422112221 112333
Q ss_pred -ccCEEeecCCCcccccccccccchhc--ccccceecccCCCceeecccccCcccccccccccccccceeeecccccccc
Q 001201 470 -QLHSLTLKFLPQLTSFYSQVKTSAAS--QTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKI 546 (1124)
Q Consensus 470 -~L~~L~l~~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 546 (1124)
+|+.|+++++.-...++. .+.. +++|++|++++|..... .......+++|++|++++|.+...
T Consensus 368 ~~L~~L~Ls~N~l~~~~~~----~~~~~~~~~L~~L~L~~n~l~~~----------~p~~l~~l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 368 ASLLTLDLSSNNFSGPILP----NLCQNPKNTLQELYLQNNGFTGK----------IPPTLSNCSELVSLHLSFNYLSGT 433 (768)
T ss_dssp TTCSEEECCSSEEEEECCT----TTTCSTTCCCCEEECCSSEEEEE----------CCGGGGGCTTCCEEECCSSEEESC
T ss_pred cCCcEEEccCCCcCCCcCh----hhhhcccCCccEEECCCCccccc----------cCHHHhcCCCCCEEECcCCcccCc
Confidence 555555555432222221 0111 44555555555532210 111222455566666666554433
Q ss_pred cccCcccccCCCccEEEEecCCCccccCcchhhhhccCCCEEEEeccccccceecccccccccceeecCccceeccccCc
Q 001201 547 WCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLS 626 (1124)
Q Consensus 547 ~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~c~ 626 (1124)
.+..+. .+++|+.|++++|. ++...|. .+..+++|+.|++++|.-...++.... .+++|+.|+++++.
T Consensus 434 ~p~~l~--~l~~L~~L~L~~n~-l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~--------~l~~L~~L~L~~N~ 501 (768)
T 3rgz_A 434 IPSSLG--SLSKLRDLKLWLNM-LEGEIPQ-ELMYVKTLETLILDFNDLTGEIPSGLS--------NCTNLNWISLSNNR 501 (768)
T ss_dssp CCGGGG--GCTTCCEEECCSSC-CCSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGG--------GCTTCCEEECCSSC
T ss_pred ccHHHh--cCCCCCEEECCCCc-ccCcCCH-HHcCCCCceEEEecCCcccCcCCHHHh--------cCCCCCEEEccCCc
Confidence 333332 25556666666542 3322232 244555666666666552222222111 35556666666555
Q ss_pred ccceecCCCccCCCCcccEEEEecCCcceeecccccccccccCCccccccccceeeeeeecCCceEEeeccccccccccc
Q 001201 627 ELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQS 706 (1124)
Q Consensus 627 ~L~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 706 (1124)
-...++.... .+++|+.|++++|.-...+|... ..+++|+.|++++|.+....+.
T Consensus 502 l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l-----------------------~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 502 LTGEIPKWIG--RLENLAILKLSNNSFSGNIPAEL-----------------------GDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCSCCCGGGG--GCTTCCEEECCSSCCEEECCGGG-----------------------GGCTTCCEEECCSSEEESBCCG
T ss_pred cCCcCChHHh--cCCCCCEEECCCCcccCcCCHHH-----------------------cCCCCCCEEECCCCccCCcCCh
Confidence 3333333222 35566666666653333343221 3355666666666655421111
Q ss_pred cCCc-------cccccccEEEEeeCCC-------------cccchHHHhhcCCCcEEEEEcceeeEEccChhhhhhhhhc
Q 001201 707 QFPK-------HIFRNLKNLEVVNDES-------------ENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 766 (1124)
Q Consensus 707 ~~~~-------~~~~~L~~L~i~~c~~-------------l~~~~~~l~~l~~L~~L~i~c~~l~~l~~~~~~~~~~~~l 766 (1124)
.+.. ......+...+.+... .......+..++.+..+++..+.+....+. .+..+
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~-----~~~~l 631 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP-----TFDNN 631 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC-----SCSSS
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch-----hhhcc
Confidence 1100 0000011111111110 001112223344444444444444443332 34567
Q ss_pred cccceEeccCcccccccccCCCCcccccCcccEEEEeccCCcccccCCccccCCccEEEEcCCcCccccchhHHhhccCC
Q 001201 767 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVC 846 (1124)
Q Consensus 767 ~~L~~L~l~~~~~L~~i~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~ 846 (1124)
++|+.|+++++.--..++ ...+.+++|+.|+++++.--..+|..++.+++|+.|++++|.--..+| ..+..+++
T Consensus 632 ~~L~~LdLs~N~l~g~ip----~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip--~~l~~l~~ 705 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIP----KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP--QAMSALTM 705 (768)
T ss_dssp BCCCEEECCSSCCBSCCC----GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC--GGGGGCCC
T ss_pred ccccEEECcCCcccccCC----HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC--hHHhCCCC
Confidence 899999999864333443 346788999999999998667888899999999999999986444554 45678999
Q ss_pred ccEEEEecccchhhhhccCcccccccccccccceeecccCCCccc
Q 001201 847 LTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTS 891 (1124)
Q Consensus 847 L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 891 (1124)
|++|++++++--..++... .+.++....+.++|.|-.
T Consensus 706 L~~L~ls~N~l~g~iP~~~--------~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 706 LTEIDLSNNNLSGPIPEMG--------QFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp CSEEECCSSEEEEECCSSS--------SGGGSCGGGGCSCTEEES
T ss_pred CCEEECcCCcccccCCCch--------hhccCCHHHhcCCchhcC
Confidence 9999999987544444321 466677777777776543
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.1e-37 Score=381.42 Aligned_cols=176 Identities=20% Similarity=0.255 Sum_probs=146.4
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccCCC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 167 (1124)
+.++.+++.+.++|..+. +++++|++++|.+. .++...|.++++|++|++++|.+..+ |.+++++++||+|+|++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 467888888888887664 78999999999887 57777789999999999999999877 6778999999999999999
Q ss_pred CCCc--ccccCcccCcEEEccCCCCCccc-hhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccccc
Q 001201 168 LGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (1124)
Q Consensus 168 l~~l--~~i~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~ 244 (1124)
+..+ ..|+++++|++|++++|.+..+| ..|+++++|++|++++|. +..++...++++++|++|++++|.+.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~----- 158 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQ----- 158 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCC-----
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCccc-----
Confidence 8877 36999999999999999999886 578999999999999998 76666565889999999999998876
Q ss_pred ccccCCCcChhhhc--CCCCCCEEEeecCCCcccCc
Q 001201 245 LNVGRSNASLQELK--LLSHLTTLEIQICDAMILPK 278 (1124)
Q Consensus 245 ~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~l~~ 278 (1124)
......++ .+++|+.|++++|.+..+++
T Consensus 159 ------~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 159 ------ALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp ------CBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred ------ccCHHHhhccccccccEEECCCCcccccCh
Confidence 33344443 55789999999888765544
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-35 Score=369.13 Aligned_cols=540 Identities=16% Similarity=0.160 Sum_probs=332.1
Q ss_pred ecCCcccCCCcccCCCCcCEEEeecCCCccCCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC
Q 001201 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (1124)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~--~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l 148 (1124)
+.+.+....|. +...++++|++++|.+..++... ++++|++|++++|.+. .+++..|.++++|++|++++|.+..+
T Consensus 11 cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 11 CSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp CCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCC
T ss_pred CCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccCcc
Confidence 33444444553 45689999999999999888653 8999999999999887 56667789999999999999999999
Q ss_pred Cc-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCcc-chhhhCCCCccEEEecCCCCCCccCccccC-
Q 001201 149 PS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLS- 223 (1124)
Q Consensus 149 p~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~- 223 (1124)
|. +|+.+++|++|+|++|.+..+ ..++++++|++|++++|.+..+ |..++++++|++|++++|. +..++...++
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 167 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDI 167 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGG
T ss_pred ChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhc
Confidence 86 699999999999999999877 5799999999999999999876 5678999999999999998 8777765443
Q ss_pred -CCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEEeCCcccccCCC
Q 001201 224 -GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNY 302 (1124)
Q Consensus 224 -~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~ 302 (1124)
.+++|++|++++|.+. ...+..++.+.+|+.|++.++.+.....
T Consensus 168 ~~~~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~l~~~~l~~~~~------------------------ 212 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIK-----------EFSPGCFHAIGRLFGLFLNNVQLGPSLT------------------------ 212 (680)
T ss_dssp GTTCEESEEECTTCCCC-----------CBCTTGGGGSSEECEEECTTCCCHHHHH------------------------
T ss_pred cccccccEEECCCCccc-----------ccChhhhhhhhhhhhhhccccccChhhH------------------------
Confidence 5689999999999876 3455678888899999887765321000
Q ss_pred CCceEEEEeccccchhHHHHhhcccceeeccccCCcccccccccccccc--ccceeeeccCCCeeEEeeCCccccccccc
Q 001201 303 KNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFL--QLKHLHVQNNPFILFIVDSMAWVRYNAFL 380 (1124)
Q Consensus 303 ~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~--~L~~L~L~~~~~l~~l~~~~~~~~~~~~~ 380 (1124)
..+.. ....++|+.|+++++.........+ ..++ +|++|++++|. +..++. ..+..++
T Consensus 213 ------------~~~~~-~l~~~~L~~L~L~~n~l~~~~~~~~--~~l~~~~L~~L~Ls~n~-l~~~~~----~~~~~l~ 272 (680)
T 1ziw_A 213 ------------EKLCL-ELANTSIRNLSLSNSQLSTTSNTTF--LGLKWTNLTMLDLSYNN-LNVVGN----DSFAWLP 272 (680)
T ss_dssp ------------HHHHH-HHTTSCCCEEECTTSCCCEECTTTT--GGGGGSCCCEEECTTSC-CCEECT----TTTTTCT
T ss_pred ------------HHHHH-HhhhccccEEEccCCcccccChhHh--hccCcCCCCEEECCCCC-cCccCc----ccccCcc
Confidence 00000 0112466666666543222111222 3333 37777776664 221110 1123334
Q ss_pred ccceeecccccccccccccccCccccCCccEEEEccCCCcCcccchhhhhccCcccEEecccccccc-----hhcccccc
Q 001201 381 LLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMK-----EIFTVGRE 455 (1124)
Q Consensus 381 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~L~~c~~l~-----~i~~~~~~ 455 (1124)
+|+.|+++++ .+..+++ ..+.++++|++|+++++..-. .++..
T Consensus 273 ~L~~L~L~~n----------------------------~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i--- 320 (680)
T 1ziw_A 273 QLEYFFLEYN----------------------------NIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKI--- 320 (680)
T ss_dssp TCCEEECCSC----------------------------CBSEECT-TTTTTCTTCCEEECTTCBCCC------CCEE---
T ss_pred cccEeeCCCC----------------------------ccCccCh-hhhcCCCCccEEeccchhhhccccccccccc---
Confidence 4444444442 2332222 223444444444444321110 00000
Q ss_pred CCcccCcccccccCccCEEeecCCCcccccccccccchhcccccceecccCCCce--eecccccCccccccccccccccc
Q 001201 456 NDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPRE--VILEDECDTLMPFFNEKVVFPNL 533 (1124)
Q Consensus 456 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~~~~~~~~~~~~~~~~~~~~~L 533 (1124)
.......+++|+.|+++++. +..+.. ..+..+++|++|++++|..- .++.. .+. ....++|
T Consensus 321 -----~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~Ls~n~~~~~~l~~~-------~f~-~~~~~~L 383 (680)
T 1ziw_A 321 -----DDFSFQWLKCLEHLNMEDND-IPGIKS---NMFTGLINLKYLSLSNSFTSLRTLTNE-------TFV-SLAHSPL 383 (680)
T ss_dssp -----CTTTTTTCTTCCEEECCSCC-BCCCCT---TTTTTCTTCCEEECTTCBSCCCEECTT-------TTG-GGTTSCC
T ss_pred -----ChhhcccCCCCCEEECCCCc-cCCCCh---hHhccccCCcEEECCCCchhhhhcchh-------hhc-ccccCcC
Confidence 00012334555555555442 222211 12445556666666555310 11100 000 0123578
Q ss_pred ceeeecccccccccccCcccccCCCccEEEEecCCCccccCcchhhhhccCCCEEEEeccccccceecccccccccceee
Q 001201 534 ETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFV 613 (1124)
Q Consensus 534 ~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~ 613 (1124)
+.|++++|.+..+.+..+.. +++|+.|++++| .+....+...+..+++|++|++++|. +..+...... .
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~ 452 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSW--LGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFA-------L 452 (680)
T ss_dssp CEEECTTSCCCEECTTTTTT--CTTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTT-------T
T ss_pred ceEECCCCCCCeEChhhhhC--CCCCCEEeCCCC-cCccccCcccccCcccccEEecCCCC-cceeChhhhh-------c
Confidence 88888888877776655543 788899998885 44433354557788889999998887 5544332211 5
Q ss_pred cCccceeccccCcc--cceecCCCccCCCCcccEEEEecCCcceeecccccccccccCCccccccccceeeeeeecCCce
Q 001201 614 FPKVTFLKLWNLSE--LKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLE 691 (1124)
Q Consensus 614 ~~~L~~L~L~~c~~--L~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 691 (1124)
+++|+.|++.++.. +...+... ..+++|+.|++++| +++.++...+ ..+++|+
T Consensus 453 ~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L~Ls~N-~l~~i~~~~~----------------------~~l~~L~ 507 (680)
T 1ziw_A 453 VPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTILDLSNN-NIANINDDML----------------------EGLEKLE 507 (680)
T ss_dssp CTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEEECCSS-CCCCCCTTTT----------------------TTCTTCC
T ss_pred CcccccchhccccccccccCCccc--ccCCCCCEEECCCC-CCCcCChhhh----------------------ccccccC
Confidence 67888888877652 22333222 25788888888875 5665553211 3467788
Q ss_pred EEeeccccccccccccCCc------cccccccEEEEeeCCCcccchHHHhhcCCCcEEEEEcceeeEE
Q 001201 692 ELKLSGKDIAMICQSQFPK------HIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEI 753 (1124)
Q Consensus 692 ~L~l~~~~~~~~~~~~~~~------~~~~~L~~L~i~~c~~l~~~~~~l~~l~~L~~L~i~c~~l~~l 753 (1124)
+|++++|.+..++...+|. ..+++|+.|++++|....+|...+.++++|+.|+++++++..+
T Consensus 508 ~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 575 (680)
T 1ziw_A 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575 (680)
T ss_dssp EEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcC
Confidence 8888888877665443332 2345566666666654455544555555555555555555443
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3e-34 Score=352.28 Aligned_cols=178 Identities=20% Similarity=0.175 Sum_probs=147.9
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccCCC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 167 (1124)
++++.++..+.++|..+. +.+++|++++|.+. .+++..|.++++|++|++++|.+..+ |.+|+++++|++|+|++|.
T Consensus 15 ~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLP-NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEECCCCCcccCcCCCC-CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 467777778888887663 47899999999887 57667789999999999999999876 7789999999999999999
Q ss_pred CCCc--ccccCcccCcEEEccCCCCCcc-chhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccccc
Q 001201 168 LGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (1124)
Q Consensus 168 l~~l--~~i~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~ 244 (1124)
+..+ ..++++++|++|++++|.+..+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~----- 166 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH----- 166 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC-----
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCccc-----
Confidence 8865 6799999999999999999988 5678999999999999998 77764222566999999999999876
Q ss_pred ccccCCCcChhhhcCCCCCC--EEEeecCCCcccCccc
Q 001201 245 LNVGRSNASLQELKLLSHLT--TLEIQICDAMILPKGL 280 (1124)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~l~~~~ 280 (1124)
...+..++.+++|+ .|++++|.+..+++..
T Consensus 167 ------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~ 198 (606)
T 3t6q_A 167 ------YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198 (606)
T ss_dssp ------EECHHHHHTTTTCCSEEEECTTCCCCEECTTT
T ss_pred ------ccChhhhhhhcccceeEEecCCCccCccChhH
Confidence 44567788899998 8889888877665543
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.4e-35 Score=358.21 Aligned_cols=181 Identities=18% Similarity=0.206 Sum_probs=143.1
Q ss_pred cCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccCC
Q 001201 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRC 166 (1124)
Q Consensus 88 lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~ 166 (1124)
.++++.+++.+..+|..+. +++++|++++|.+. .++...|.++++|++|++++|.+..+ |.+|+++++||+|+|++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCceEccCCCcccCCCCCC-CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 3577888888888887664 78999999998877 57766788999999999999998877 667889999999999999
Q ss_pred CCCCc--ccccCcccCcEEEccCCCCCccc-hhhhCCCCccEEEecCCCCCC--ccCccccCCCCCccEEEeecccCccc
Q 001201 167 ALGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLK--VIPPNLLSGLSRLEDLYMGNTSVKWE 241 (1124)
Q Consensus 167 ~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~--~lp~~~i~~L~~L~~L~l~~~~i~~~ 241 (1124)
.+..+ ..|+++++|++|++++|.+..+| ..++++++|++|++++|. +. .+|.. ++++++|++|++++|.+...
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-HhhcCCCCEEEccCCcceec
Confidence 88866 67889999999999999988886 678999999999999988 65 46766 88999999999999887611
Q ss_pred cccccccCCCcChhhhcCCCC-CCEEEeecCCCcccCccc
Q 001201 242 FEGLNVGRSNASLQELKLLSH-LTTLEIQICDAMILPKGL 280 (1124)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~l~~~~ 280 (1124)
....+..+.+++. +..|++++|.+..++...
T Consensus 169 --------~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~ 200 (606)
T 3vq2_A 169 --------TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200 (606)
T ss_dssp --------CTTTTHHHHHCTTCCCEEECTTCCCCEECTTT
T ss_pred --------ChhhhhhhhccccccceeeccCCCcceeCccc
Confidence 1122344444443 568999998887766654
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.7e-34 Score=348.60 Aligned_cols=189 Identities=21% Similarity=0.217 Sum_probs=158.0
Q ss_pred EecCCcccCCCcccCCCCcCEEEeecCCCccCCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCcc
Q 001201 70 MLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS 147 (1124)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~--~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~ 147 (1124)
.+.+......|. +..+++++|++++|.+..++... ++++|++|++++|.+. .+++..|.++++|++|+|++|.+..
T Consensus 17 ~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 17 QCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp ECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCC
T ss_pred EccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccc
Confidence 344555555554 56789999999999999888743 8999999999999887 6777778999999999999999998
Q ss_pred C-CcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCC--ccchhhhCCCCccEEEecCCCCCCccCcccc
Q 001201 148 L-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLL 222 (1124)
Q Consensus 148 l-p~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i 222 (1124)
+ |.+|+++++|++|+|++|.+..+ ..++++.+|++|++++|.+. .+|..++++++|++|++++|. +..++...+
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 173 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDL 173 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTT
T ss_pred cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhh
Confidence 8 88999999999999999999876 67999999999999999998 479999999999999999998 887776557
Q ss_pred CCCCCcc----EEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCC
Q 001201 223 SGLSRLE----DLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1124)
Q Consensus 223 ~~L~~L~----~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (1124)
+.+.+|+ +|++++|.+.. .....+... +|+.|++++|.+
T Consensus 174 ~~l~~L~~~l~~L~l~~n~l~~-----------~~~~~~~~~-~L~~L~L~~n~~ 216 (606)
T 3vq2_A 174 QFLRENPQVNLSLDMSLNPIDF-----------IQDQAFQGI-KLHELTLRGNFN 216 (606)
T ss_dssp HHHHHCTTCCCEEECTTCCCCE-----------ECTTTTTTC-EEEEEEEESCCS
T ss_pred hhhhccccccceeeccCCCcce-----------eCcccccCc-eeeeeeccCCcc
Confidence 7666665 89999998762 222233333 799999998875
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.3e-33 Score=339.91 Aligned_cols=529 Identities=18% Similarity=0.171 Sum_probs=316.5
Q ss_pred ccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEcc
Q 001201 110 LEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLV 186 (1124)
Q Consensus 110 L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls 186 (1124)
-++++..+..+. .+|..+ -.++++|++++|.+..+ |.+|+++++||+|+|++|.+..+ ..|+++++|++|+++
T Consensus 14 ~~~~~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 14 NKTYNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TTEEECTTSCCS-SCCTTS---CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCcc-cCcCCC---CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCC
Confidence 346777776665 688655 24799999999999988 67899999999999999998866 679999999999999
Q ss_pred CCCCCcc-chhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCE
Q 001201 187 DSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (1124)
Q Consensus 187 ~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (1124)
+|.+..+ |..|+++++|++|++++|. +..++...++++++|++|++++|.+. ...+..+..+++|+.
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~ 157 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHIS-----------SIKLPKGFPTEKLKV 157 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCC-----------CCCCCTTCCCTTCCE
T ss_pred CCcccccChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCccc-----------ccCcccccCCcccCE
Confidence 9999877 6789999999999999998 88885555899999999999999887 223345555899999
Q ss_pred EEeecCCCcccCccccccccceEEEEeCCcccccCCCCCceEEEEeccccchhHHHHhhcccc--eeeccccCCcccccc
Q 001201 266 LEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIE--ELYLDEVPGIKNVLY 343 (1124)
Q Consensus 266 L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~--~L~L~~~~~~~~~~~ 343 (1124)
|++++|.+..++.. .++.+++|+ .|+++++.... ..+
T Consensus 158 L~L~~n~l~~~~~~----------------------------------------~~~~l~~L~~l~L~l~~n~l~~-~~~ 196 (606)
T 3t6q_A 158 LDFQNNAIHYLSKE----------------------------------------DMSSLQQATNLSLNLNGNDIAG-IEP 196 (606)
T ss_dssp EECCSSCCCEECHH----------------------------------------HHHTTTTCCSEEEECTTCCCCE-ECT
T ss_pred EEcccCcccccChh----------------------------------------hhhhhcccceeEEecCCCccCc-cCh
Confidence 99999987655432 223334444 44444432211 122
Q ss_pred ccccccccccceeeeccCCCeeEEeeCCcccccccc--cccceeecccccccccccccccCcccc--CCccEEEEccCCC
Q 001201 344 DLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAF--LLLESLVLHNLIHLEKICLGQLRAESF--YKLKIIKVRNCDK 419 (1124)
Q Consensus 344 ~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~--~~L~~L~l~~C~~ 419 (1124)
.. .....|+.|++.+|..+... ...+ ..++.+.+..+..+............+ .+|+.|+++++ .
T Consensus 197 ~~--~~~~~L~~L~l~~~~~~~~~--------~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~ 265 (606)
T 3t6q_A 197 GA--FDSAVFQSLNFGGTQNLLVI--------FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-Y 265 (606)
T ss_dssp TT--TTTCEEEEEECTTCSCHHHH--------HHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC-C
T ss_pred hH--hhhccccccccCCchhHHHH--------hhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC-c
Confidence 11 12345666666666422110 0011 112223333222222110000001111 26777777774 4
Q ss_pred cCcccchhhhhccCcccEEecccccccchhccccccCCcccCcccccccCccCEEeecCCCcccccccccccchhccccc
Q 001201 420 LKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRL 499 (1124)
Q Consensus 420 L~~l~~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L 499 (1124)
++.+++ ..+..+++|++|+++++ .+..++. ....+++|++|+++++. +..+.. ..+..+++|
T Consensus 266 l~~~~~-~~~~~l~~L~~L~l~~n-~l~~lp~------------~l~~l~~L~~L~l~~n~-l~~~~~---~~~~~l~~L 327 (606)
T 3t6q_A 266 FFNISS-NTFHCFSGLQELDLTAT-HLSELPS------------GLVGLSTLKKLVLSANK-FENLCQ---ISASNFPSL 327 (606)
T ss_dssp CSSCCT-TTTTTCTTCSEEECTTS-CCSCCCS------------SCCSCTTCCEEECTTCC-CSBGGG---GCGGGCTTC
T ss_pred cCccCH-HHhccccCCCEEeccCC-ccCCCCh------------hhcccccCCEEECccCC-cCcCch---hhhhccCcC
Confidence 666654 44677788888888774 4555542 23456778888887764 233221 235567777
Q ss_pred ceecccCCCce-eecccccCcccccccccccccccceeeeccccccccc--ccCcccccCCCccEEEEecCCCccccCcc
Q 001201 500 KELSTHTLPRE-VILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIW--CNQLAAVYSQNLTRLIVHGCEKLKYLFPS 576 (1124)
Q Consensus 500 ~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~l~~L~~L~l~~C~~L~~l~~~ 576 (1124)
+.|++++|... .++ ......+++|++|++++|.+..+. ...+ ..+++|+.|++++| .+..+.+
T Consensus 328 ~~L~l~~n~~~~~~~----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~- 393 (606)
T 3t6q_A 328 THLSIKGNTKRLELG----------TGCLENLENLRELDLSHDDIETSDCCNLQL--RNLSHLQSLNLSYN-EPLSLKT- 393 (606)
T ss_dssp SEEECCSCSSCCBCC----------SSTTTTCTTCCEEECCSSCCCEEEESTTTT--TTCTTCCEEECCSC-SCEEECT-
T ss_pred CEEECCCCCcccccc----------hhhhhccCcCCEEECCCCccccccCcchhc--ccCCCCCEEECCCC-cCCcCCH-
Confidence 77777777432 111 011234677888888887766554 2222 23677888888774 4555433
Q ss_pred hhhhhccCCCEEEEeccccccceecccccccccceeecCccceeccccCcccceecCCCccCCCCcccEEEEecCCccee
Q 001201 577 SMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKI 656 (1124)
Q Consensus 577 ~~~~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~i~~C~~L~~ 656 (1124)
..+..+++|+.|++++|. +....... ....+++|+.|+++++.- ........ ..+++|+.|++++|. +..
T Consensus 394 ~~~~~l~~L~~L~l~~n~-l~~~~~~~------~~~~l~~L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~L~~n~-l~~ 463 (606)
T 3t6q_A 394 EAFKECPQLELLDLAFTR-LKVKDAQS------PFQNLHLLKVLNLSHSLL-DISSEQLF-DGLPALQHLNLQGNH-FPK 463 (606)
T ss_dssp TTTTTCTTCSEEECTTCC-EECCTTCC------TTTTCTTCCEEECTTCCC-BTTCTTTT-TTCTTCCEEECTTCB-CGG
T ss_pred HHhcCCccCCeEECCCCc-CCCcccch------hhhCcccCCEEECCCCcc-CCcCHHHH-hCCCCCCEEECCCCC-CCc
Confidence 446667788888887776 33321110 001456777777776643 22222222 246777777777763 221
Q ss_pred --ecccccccccccCCccccccccceeeeeeecCCceEEeeccccccccccccCCccccccccEEEEeeCCCcccchHHH
Q 001201 657 --FTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFL 734 (1124)
Q Consensus 657 --lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~l 734 (1124)
++... .-..+++|+.|++++|.+..+.+..+ ..+++|+.|++++|.....+...+
T Consensus 464 ~~~~~~~---------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l 520 (606)
T 3t6q_A 464 GNIQKTN---------------------SLQTLGRLEILVLSFCDLSSIDQHAF--TSLKMMNHVDLSHNRLTSSSIEAL 520 (606)
T ss_dssp GEECSSC---------------------GGGGCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCGGGGGGG
T ss_pred cccccch---------------------hhccCCCccEEECCCCccCccChhhh--ccccCCCEEECCCCccCcCChhHh
Confidence 11000 00345667777777776655443333 335666666666665554444455
Q ss_pred hhcCCCcEEEEEcceeeEEccChhhhhhhhhccccceEeccCc
Q 001201 735 ERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWEL 777 (1124)
Q Consensus 735 ~~l~~L~~L~i~c~~l~~l~~~~~~~~~~~~l~~L~~L~l~~~ 777 (1124)
.++++| .|+++.+.+..+.+. .+..+++|+.|+++++
T Consensus 521 ~~l~~L-~L~L~~N~l~~~~~~-----~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 521 SHLKGI-YLNLASNHISIILPS-----LLPILSQQRTINLRQN 557 (606)
T ss_dssp TTCCSC-EEECCSSCCCCCCGG-----GHHHHHTSSEEECTTC
T ss_pred Cccccc-EEECcCCcccccCHh-----hcccCCCCCEEeCCCC
Confidence 556666 565555555544332 2233455555555543
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.9e-31 Score=332.34 Aligned_cols=526 Identities=17% Similarity=0.155 Sum_probs=294.9
Q ss_pred ecCCcccCCCcccCCCCcCEEEeecCCCccCCCC-C-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC
Q 001201 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (1124)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~-~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l 148 (1124)
..+.+....|. .+.++++|++++|.+..+... + ++++|++|+|++|.....+++..|.++++|++|+|++|.+..+
T Consensus 11 cs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 11 YRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88 (844)
T ss_dssp ESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred ccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc
Confidence 34445555565 778899999999999877543 3 8899999999999777678777889999999999999999876
Q ss_pred -CcccCCCCCCcEEEccCCCCCC--cc--cccCcccCcEEEccCCCCCccc--hhhhCCCCccEEEecCCCCCCccCccc
Q 001201 149 -PSLFHLPLNLQTLCLDRCALGD--IA--IIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVIPPNL 221 (1124)
Q Consensus 149 -p~~i~~l~~Lr~L~L~~~~l~~--l~--~i~~L~~L~~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~~~ 221 (1124)
|.+|+.+++|++|+|++|.+.. +. .++++++|++|++++|.+..++ ..|+++++|++|++++|. +..+....
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~ 167 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHE 167 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGG
T ss_pred CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHH
Confidence 7889999999999999998875 33 3889999999999999888763 578999999999999988 65554444
Q ss_pred cCCC--CCccEEEeecccCccccccccccCCCcChhhhcCCC------CCCEEEeecCCCcc-cCccc----cccccceE
Q 001201 222 LSGL--SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLS------HLTTLEIQICDAMI-LPKGL----FSKKLERY 288 (1124)
Q Consensus 222 i~~L--~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~~-l~~~~----~~~~L~~l 288 (1124)
++.+ ++|++|++++|.+. ...+..++.+. .|+.|++++|.+.. .+..+ ....+..+
T Consensus 168 l~~l~~~~L~~L~L~~n~l~-----------~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANSLY-----------SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236 (844)
T ss_dssp GHHHHHCSSCCCEECCSBSC-----------CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred cccccCCccceEECCCCccc-----------cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence 6766 88999999998876 22222333333 48899998886532 22221 11222222
Q ss_pred EEEeCCcccccCCCCCceEEEEeccccchhHHHHhhcccceeeccccCCcccc-ccccccccccccceeeeccCCCeeEE
Q 001201 289 KIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNV-LYDLDIEGFLQLKHLHVQNNPFILFI 367 (1124)
Q Consensus 289 ~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~l~~l 367 (1124)
.+....... .. +....... ...+..-..++|+.|++++|.. ..+
T Consensus 237 ~l~~~~~~~---------------------------------~~-~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l-~~~ 281 (844)
T 3j0a_A 237 ILAHHIMGA---------------------------------GF-GFHNIKDPDQNTFAGLARSSVRHLDLSHGFV-FSL 281 (844)
T ss_dssp ECCSSCCBC---------------------------------SS-SCSSSTTGGGTTTTTTTTSCCCEEECTTCCC-CEE
T ss_pred ecccccccc---------------------------------cc-cccccCCCChhhhhccccCCccEEECCCCcc-ccc
Confidence 221000000 00 00000000 0011001235566666666642 211
Q ss_pred eeCCcccccccccccceeecccccccccccccccCccccCCccEEEEccCCCcCcccchhhhhccCcccEEecccccccc
Q 001201 368 VDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMK 447 (1124)
Q Consensus 368 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~L~~c~~l~ 447 (1124)
.. ..+..+++|+.|+++++ .+..+.. .....+++|++|+++++ .++.+.+ ..+..+++|++|+++++ .+.
T Consensus 282 ~~----~~~~~l~~L~~L~L~~n-~i~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~i~ 351 (844)
T 3j0a_A 282 NS----RVFETLKDLKVLNLAYN-KINKIAD--EAFYGLDNLQVLNLSYN-LLGELYS-SNFYGLPKVAYIDLQKN-HIA 351 (844)
T ss_dssp CS----CCSSSCCCCCEEEEESC-CCCEECT--TTTTTCSSCCEEEEESC-CCSCCCS-CSCSSCTTCCEEECCSC-CCC
T ss_pred Ch----hhhhcCCCCCEEECCCC-cCCCCCh--HHhcCCCCCCEEECCCC-CCCccCH-HHhcCCCCCCEEECCCC-CCC
Confidence 10 12334555666666553 2332211 11234566666666663 3444433 23556666777776663 344
Q ss_pred hhccccccCCcccCcccccccCccCEEeecCCCcccccccccccchhcccccceecccCCCceeecccccCccccccccc
Q 001201 448 EIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEK 527 (1124)
Q Consensus 448 ~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 527 (1124)
.+++ .....+++|+.|+++++. ++.++ .+++|+.|++++|....++
T Consensus 352 ~~~~-----------~~~~~l~~L~~L~Ls~N~-l~~i~--------~~~~L~~L~l~~N~l~~l~-------------- 397 (844)
T 3j0a_A 352 IIQD-----------QTFKFLEKLQTLDLRDNA-LTTIH--------FIPSIPDIFLSGNKLVTLP-------------- 397 (844)
T ss_dssp CCCS-----------SCSCSCCCCCEEEEETCC-SCCCS--------SCCSCSEEEEESCCCCCCC--------------
T ss_pred ccCh-----------hhhcCCCCCCEEECCCCC-CCccc--------CCCCcchhccCCCCccccc--------------
Confidence 3331 122345666666666542 22221 2455566666655422111
Q ss_pred ccccccceeeecccccccccccCcccccCCCccEEEEecCCCccccCcchhhhhccCCCEEEEeccccccceeccccccc
Q 001201 528 VVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEE 607 (1124)
Q Consensus 528 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~l~~i~~~~~~~~ 607 (1124)
....+++.|++++|.+..+..... ...+++|+.|++++ ++++...+...+..+++|+.|++++|. +..++.... .
T Consensus 398 ~~~~~l~~L~ls~N~l~~l~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~--~ 472 (844)
T 3j0a_A 398 KINLTANLIHLSENRLENLDILYF-LLRVPHLQILILNQ-NRFSSCSGDQTPSENPSLEQLFLGENM-LQLAWETEL--C 472 (844)
T ss_dssp CCCTTCCEEECCSCCCCSSTTHHH-HTTCTTCCEEEEES-CCCCCCCSSSSSCSCTTCCBCEEESCC-CSSSCCSCC--C
T ss_pred ccccccceeecccCccccCchhhh-hhcCCccceeeCCC-CcccccccccccccCCccccccCCCCc-ccccccccc--c
Confidence 013456666666666544321110 01356677777766 345443333334445667777776665 433221100 0
Q ss_pred ccceeecCccceeccccCcccceecCCCccCCCCcccEEEEecCCcceeecccccccccccCCccccccccceeeeeeec
Q 001201 608 ATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVT 687 (1124)
Q Consensus 608 ~~~~~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1124)
......+++|+.|+++++ .++.++...+. .+++|+.|+++++ +++.+|... ..
T Consensus 473 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~Ls~N-~l~~l~~~~------------------------~~ 525 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHN-YLNSLPPGVFS-HLTALRGLSLNSN-RLTVLSHND------------------------LP 525 (844)
T ss_dssp SSCSSCBCCEECCCCCHH-HHTTCCTTSSS-SCCSCSEEEEESC-CCSSCCCCC------------------------CC
T ss_pred hhhhcCcccccEEECCCC-cccccChhHcc-chhhhheeECCCC-CCCccChhh------------------------hh
Confidence 000113456666666665 34444443332 4666666666664 555554221 12
Q ss_pred CCceEEeeccccccccccccCCccccccccEEEEeeCCC
Q 001201 688 SKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDES 726 (1124)
Q Consensus 688 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~ 726 (1124)
++|+.|++++|.+....+ ..+.+|+.|++++|+.
T Consensus 526 ~~L~~L~Ls~N~l~~~~~-----~~~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 526 ANLEILDISRNQLLAPNP-----DVFVSLSVLDITHNKF 559 (844)
T ss_dssp SCCCEEEEEEECCCCCCS-----CCCSSCCEEEEEEECC
T ss_pred ccccEEECCCCcCCCCCh-----hHhCCcCEEEecCCCc
Confidence 556666666666544322 2234556666655553
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=5.2e-31 Score=334.03 Aligned_cols=171 Identities=18% Similarity=0.186 Sum_probs=140.0
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCC-CccC-CcccCCCCCCcEEEccCC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ-FLSL-PSLFHLPLNLQTLCLDRC 166 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~-i~~l-p~~i~~l~~Lr~L~L~~~ 166 (1124)
+..+.+++.+..+|. -.++|++|+|++|.+. .++...|.++++|++|+|++|. +..+ |.+|+++++||+|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 467788888999998 5689999999999887 5655668999999999999994 4566 778999999999999999
Q ss_pred CCCCc--ccccCcccCcEEEccCCCCCc-cchh--hhCCCCccEEEecCCCCCCccC-ccccCCCCCccEEEeecccCcc
Q 001201 167 ALGDI--AIIGNLKKLEILSLVDSNIEQ-LPEE--MAQLTQLRLFDLSGCSKLKVIP-PNLLSGLSRLEDLYMGNTSVKW 240 (1124)
Q Consensus 167 ~l~~l--~~i~~L~~L~~L~Ls~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~lp-~~~i~~L~~L~~L~l~~~~i~~ 240 (1124)
.+..+ ..|+++.+|++|+|++|.+.. +|.. ++++++|++|++++|. +..++ ...++++++|++|++++|.+.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~- 161 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIF- 161 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCC-
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCC-
Confidence 98865 789999999999999999885 5554 8999999999999998 65553 334899999999999999876
Q ss_pred ccccccccCCCcChhhhcCC--CCCCEEEeecCCCc
Q 001201 241 EFEGLNVGRSNASLQELKLL--SHLTTLEIQICDAM 274 (1124)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~ 274 (1124)
...+..+..+ ++|+.|+++.|.+.
T Consensus 162 ----------~~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 162 ----------LVCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp ----------CCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred ----------eeCHHHcccccCCccceEECCCCccc
Confidence 3334455555 78899999888754
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=5.1e-31 Score=321.30 Aligned_cols=145 Identities=18% Similarity=0.302 Sum_probs=68.5
Q ss_pred EEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccCCCCC
Q 001201 91 IFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALG 169 (1124)
Q Consensus 91 L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~ 169 (1124)
++.++..+.++|..+ .+++++|++++|.+. .++...|.++++|++|++++|.+..+ |.+|+++++||+|+|++|.+.
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp EECCSSCCSSCCSSS-CSSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEeCCCCccccCCCc-cccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC
Confidence 333333444444332 134455555555443 33333445555555555555555444 233455555555555555544
Q ss_pred Cc--ccccCcccCcEEEccCCCCCccch-hhhCCCCccEEEecCCCCCCc--cCccccCCCCCccEEEeecccCc
Q 001201 170 DI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 170 ~l--~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~i~ 239 (1124)
.+ ..|+++++|++|++++|.++.+|. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+.
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCccc
Confidence 33 344555555555555555554443 34555555555555554 332 3333 455555555555555443
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=1e-30 Score=318.73 Aligned_cols=187 Identities=21% Similarity=0.213 Sum_probs=155.7
Q ss_pred ecCCcccCCCcccCCCCcCEEEeecCCCccCCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC
Q 001201 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (1124)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~--~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l 148 (1124)
+.+.+...+|. ....++++|++++|.+..++... ++++|++|++++|.+. .++...|.++++|++|++++|.+..+
T Consensus 14 c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 14 CMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL 91 (570)
T ss_dssp CCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred eCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCcc
Confidence 33444555553 45778999999999999887543 8999999999999877 67778899999999999999999988
Q ss_pred C-cccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCc--cchhhhCCCCccEEEecCCCCCCccCccccC
Q 001201 149 P-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLS 223 (1124)
Q Consensus 149 p-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~ 223 (1124)
| .+|+.+++||+|++++|.+..+ ..++++++|++|++++|.+.. +|..|+++++|++|++++|. +..++...++
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 170 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR 170 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGH
T ss_pred CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHcc
Confidence 5 7899999999999999999987 369999999999999999985 69999999999999999998 8888766678
Q ss_pred CCCCc----cEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCC
Q 001201 224 GLSRL----EDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (1124)
Q Consensus 224 ~L~~L----~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (1124)
.+.+| ++|++++|.+. ...+..+..+ +|+.|++++|.
T Consensus 171 ~l~~L~~~~~~L~l~~n~l~-----------~~~~~~~~~~-~L~~L~l~~n~ 211 (570)
T 2z63_A 171 VLHQMPLLNLSLDLSLNPMN-----------FIQPGAFKEI-RLHKLTLRNNF 211 (570)
T ss_dssp HHHTCTTCCCEEECTTCCCC-----------EECTTTTTTC-EEEEEEEESCC
T ss_pred chhccchhhhhcccCCCCce-----------ecCHHHhccC-cceeEeccccc
Confidence 88888 88999988876 2223344444 68888887764
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.9e-30 Score=314.55 Aligned_cols=470 Identities=17% Similarity=0.146 Sum_probs=262.2
Q ss_pred CCCcCEEEeecCCCccCCCC-C-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcc-cCCCCCCcEE
Q 001201 85 LKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL-FHLPLNLQTL 161 (1124)
Q Consensus 85 ~~~lr~L~l~~n~i~~l~~~-~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~-i~~l~~Lr~L 161 (1124)
.+++++|++++|.+..++.. + ++++|++|++++|.+. .++...|.++++|++|++++|.+..+|.. |+.+++|++|
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 35566666666666555332 2 5566666666666555 34444556666666666666666655433 6666666666
Q ss_pred EccCCCCCCc---ccccCcccCcEEEccCCC-CCccc-hhhhCCCCccEEEecCCCCCCc-cCccccCCCCCccEEEeec
Q 001201 162 CLDRCALGDI---AIIGNLKKLEILSLVDSN-IEQLP-EEMAQLTQLRLFDLSGCSKLKV-IPPNLLSGLSRLEDLYMGN 235 (1124)
Q Consensus 162 ~L~~~~l~~l---~~i~~L~~L~~L~Ls~~~-i~~lp-~~i~~L~~L~~L~L~~~~~l~~-lp~~~i~~L~~L~~L~l~~ 235 (1124)
++++|.+..+ ..++++++|++|++++|. +..+| ..++++++|++|++++|. +.. +|.. ++++++|++|++++
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQS-LKSIRDIHHLTLHL 181 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTT-TTTCSEEEEEEEEC
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhh-hhccccCceEeccc
Confidence 6666665532 445566666666666664 44554 355666666666666665 433 3333 55666666666665
Q ss_pred ccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEEeCCcccccCCCCCceEEEEecccc
Q 001201 236 TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTS 315 (1124)
Q Consensus 236 ~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~ 315 (1124)
|.+.. .....++.+++|+.|++++|.+...+... .........++.+.+..+.
T Consensus 182 n~~~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------------~~~~~~~~~L~~L~l~~n~- 234 (549)
T 2z81_A 182 SESAF-----------LLEIFADILSSVRYLELRDTNLARFQFSP---------------LPVDEVSSPMKKLAFRGSV- 234 (549)
T ss_dssp SBSTT-----------HHHHHHHSTTTBSEEEEESCBCTTCCCCC---------------CSSCCCCCCCCEEEEESCE-
T ss_pred Ccccc-----------cchhhHhhcccccEEEccCCccccccccc---------------cchhhhhhcccceeccccc-
Confidence 55430 00111234556666666665544331100 0001112233333333221
Q ss_pred chhHHHHhhcccceeeccccCCcccccccc--ccccccccceeeeccCCCeeEEeeCC--cccccccccccceeeccccc
Q 001201 316 NVDEVIMQLKGIEELYLDEVPGIKNVLYDL--DIEGFLQLKHLHVQNNPFILFIVDSM--AWVRYNAFLLLESLVLHNLI 391 (1124)
Q Consensus 316 ~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~l~~~~--~~~~~~~~~~L~~L~l~~~~ 391 (1124)
.....+..+ ....+++|+.+++++|.. ..+.+.. .+.....+++|+.|.+.++.
T Consensus 235 ---------------------l~~~~~~~l~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 292 (549)
T 2z81_A 235 ---------------------LTDESFNELLKLLRYILELSEVEFDDCTL-NGLGDFNPSESDVVSELGKVETVTIRRLH 292 (549)
T ss_dssp ---------------------EEHHHHHHHHGGGGGCTTCCEEEEESCEE-ECCSCCCCCTTTCCCCCTTCCEEEEESCB
T ss_pred ---------------------cchhHHHHHHHHhhhhccccccccccccc-cccccccccchhhhhhhcccccccccccc
Confidence 100000000 012344555555555431 1110000 00122344556666655532
Q ss_pred ccccccccccC--ccccCCccEEEEccCCCcCcccchhhhhccCcccEEecccccccchhccccccCCcccCcccccccC
Q 001201 392 HLEKICLGQLR--AESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFS 469 (1124)
Q Consensus 392 ~l~~~~~~~~~--~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~ 469 (1124)
--........+ ...+++|+.|+++++ ++..+|. ..+..+++|++|+++++.-...++... .....++
T Consensus 293 i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~---------~~~~~l~ 361 (549)
T 2z81_A 293 IPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKNS---------ACKGAWP 361 (549)
T ss_dssp CSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCCCH-HHHHHCTTCCEEECCSSCCCHHHHHHH---------TCTTSST
T ss_pred cchhhhcccchhhhhhcccceEEEeccC-ccccCCH-HHHhcCccccEEEccCCccccccccch---------hhhhccc
Confidence 11100000000 124578999999985 4777765 445678999999999865333332100 0134678
Q ss_pred ccCEEeecCCCcccccccccccchhcccccceecccCCCceeecccccCcccccccccccccccceeeeccccccccccc
Q 001201 470 QLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCN 549 (1124)
Q Consensus 470 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 549 (1124)
+|+.|+++++. ++.++.. ...+..+++|+.|++++|....++ .....+++|++|++++|.++.+...
T Consensus 362 ~L~~L~Ls~N~-l~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~lp-----------~~~~~~~~L~~L~Ls~N~l~~l~~~ 428 (549)
T 2z81_A 362 SLQTLVLSQNH-LRSMQKT-GEILLTLKNLTSLDISRNTFHPMP-----------DSCQWPEKMRFLNLSSTGIRVVKTC 428 (549)
T ss_dssp TCCEEECTTSC-CCCHHHH-HHHGGGCTTCCEEECTTCCCCCCC-----------SCCCCCTTCCEEECTTSCCSCCCTT
T ss_pred cCcEEEccCCc-ccccccc-hhhhhcCCCCCEEECCCCCCccCC-----------hhhcccccccEEECCCCCcccccch
Confidence 99999999863 4443210 012567889999999998533222 1233578999999999997765432
Q ss_pred CcccccCCCccEEEEecCCCccccCcchhhhhccCCCEEEEeccccccceecccccccccceeecCccceeccccCcccc
Q 001201 550 QLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELK 629 (1124)
Q Consensus 550 ~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~ 629 (1124)
. .++|+.|++++| +++.+ + ..+++|++|++++|. ++.++... .+++|+.|+++++ .++
T Consensus 429 ~-----~~~L~~L~Ls~N-~l~~~-~----~~l~~L~~L~Ls~N~-l~~ip~~~---------~l~~L~~L~Ls~N-~l~ 486 (549)
T 2z81_A 429 I-----PQTLEVLDVSNN-NLDSF-S----LFLPRLQELYISRNK-LKTLPDAS---------LFPVLLVMKISRN-QLK 486 (549)
T ss_dssp S-----CTTCSEEECCSS-CCSCC-C----CCCTTCCEEECCSSC-CSSCCCGG---------GCTTCCEEECCSS-CCC
T ss_pred h-----cCCceEEECCCC-Chhhh-c----ccCChhcEEECCCCc-cCcCCCcc---------cCccCCEEecCCC-ccC
Confidence 1 368999999995 67765 2 468899999999996 88776521 5789999999986 566
Q ss_pred eecCCCccCCCCcccEEEEecCCc
Q 001201 630 TFYPGTHTSKWPMLKKLEVYGCDK 653 (1124)
Q Consensus 630 ~~~~~~~~~~l~~L~~L~i~~C~~ 653 (1124)
.++..... .+++|+.|++++|+-
T Consensus 487 ~~~~~~~~-~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 487 SVPDGIFD-RLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCCTTGGG-GCTTCCEEECCSSCB
T ss_pred CcCHHHHh-cCcccCEEEecCCCc
Confidence 66655433 689999999998763
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=7.1e-29 Score=300.65 Aligned_cols=171 Identities=20% Similarity=0.266 Sum_probs=138.6
Q ss_pred EEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC-cccCCCCCCcEEEccCCCCC
Q 001201 91 IFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALG 169 (1124)
Q Consensus 91 L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~ 169 (1124)
.+.+++.+.++|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+..++ .+|+.+++|++|+|++|.+.
T Consensus 10 c~~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT-AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp EECTTSCCSSCCSCCC-TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred EECCCCccccccccCC-CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 5667788888887664 78999999999876 455566788999999999999988774 67889999999999999888
Q ss_pred Cc--ccccCcccCcEEEccCCCCCcc--chhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccc
Q 001201 170 DI--AIIGNLKKLEILSLVDSNIEQL--PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (1124)
Q Consensus 170 ~l--~~i~~L~~L~~L~Ls~~~i~~l--p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~ 245 (1124)
.+ ..++++++|++|++++|.+..+ |..++++++|++|++++|..+..+|...++++++|++|++++|.+.
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~------ 161 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR------ 161 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC------
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc------
Confidence 76 4588999999999999988854 6678899999999999887677787655888999999999988876
Q ss_pred cccCCCcChhhhcCCCCCCEEEeecCCCc
Q 001201 246 NVGRSNASLQELKLLSHLTTLEIQICDAM 274 (1124)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (1124)
...+..++.+++|+.|+++++...
T Consensus 162 -----~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 162 -----NYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp -----EECTTTTTTCSEEEEEEEECSBST
T ss_pred -----ccChhhhhccccCceEecccCccc
Confidence 345567778888888888877643
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.5e-28 Score=304.03 Aligned_cols=180 Identities=17% Similarity=0.280 Sum_probs=134.9
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC-cccCCCCCCcEEEccCCC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCA 167 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~ 167 (1124)
++.+-++..+.++|..+. +++++|+|++|.+. .++...|.++++|++|+|++|.|+.+| .+|+++++|++|+|++|.
T Consensus 34 ~~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TEEECTTSCCSSCCSSSC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CEEECCCCCcCccCCCCC-cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 344555556778887652 57889999998887 688778889999999999999998885 468889999999999998
Q ss_pred CCCc--ccccCcccCcEEEccCCCCCccch-hhhCCCCccEEEecCCCCCCcc--CccccCCCCCccEEEeecccCcccc
Q 001201 168 LGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVI--PPNLLSGLSRLEDLYMGNTSVKWEF 242 (1124)
Q Consensus 168 l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l--p~~~i~~L~~L~~L~l~~~~i~~~~ 242 (1124)
++.+ ..|.++.+|++|++++|.++.+|. .|+++++|++|++++|. +..+ |.. ++.+++|++|++++|.+....
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEEC
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCccccccc
Confidence 8876 568889999999999999888875 58899999999999887 6544 443 788899999999988876111
Q ss_pred ccccccCCCcChhhhcCCCC-CCEEEeecCCCcccCccc
Q 001201 243 EGLNVGRSNASLQELKLLSH-LTTLEIQICDAMILPKGL 280 (1124)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~l~~~~ 280 (1124)
...+..+.+++. +..++++.+.+..++...
T Consensus 190 --------~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~ 220 (635)
T 4g8a_A 190 --------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 220 (635)
T ss_dssp --------GGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred --------cccccchhhhhhhhhhhhcccCcccccCccc
Confidence 112233334332 346778887776665543
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.4e-28 Score=293.58 Aligned_cols=143 Identities=20% Similarity=0.194 Sum_probs=116.5
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccCCC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 167 (1124)
+++++++|.+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+..+ |.+|+.+++|++|+|++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 678899999988887765 88999999998877 56667788899999999999988877 6788899999999999998
Q ss_pred CCCcccccCcccCcEEEccCCCCCc--cchhhhCCCCccEEEecCCCCCCccCccccCCCCCc--cEEEeecccC
Q 001201 168 LGDIAIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL--EDLYMGNTSV 238 (1124)
Q Consensus 168 l~~l~~i~~L~~L~~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L--~~L~l~~~~i 238 (1124)
+..++.. .+.+|++|++++|.+.. +|..++++++|++|++++|. +... .++.+++| ++|++++|.+
T Consensus 81 l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 81 LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred eeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeecccc
Confidence 8877444 78888888888888875 46788888888888888887 5542 26667777 8888888876
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.7e-27 Score=294.66 Aligned_cols=524 Identities=17% Similarity=0.135 Sum_probs=326.9
Q ss_pred cCCcccCCCcccCCCCcCEEEeecCCCccCCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC
Q 001201 72 RNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP 149 (1124)
Q Consensus 72 ~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~--~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp 149 (1124)
.+.+....|. +.+.++++|++++|.|..+++.. ++++|++|+|++|.+. .+++++|.++++|++|+|++|.++.+|
T Consensus 39 ~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 39 MELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp TTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 3445555553 56789999999999999998653 8999999999999987 688889999999999999999999997
Q ss_pred c-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCc--cchhhhCCCCccEEEecCCCCCCccCccccCC
Q 001201 150 S-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSG 224 (1124)
Q Consensus 150 ~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~ 224 (1124)
. .|+++++|++|+|++|.++.+ ..|+++++|++|++++|.+.. +|..++.+++|++|++++|. +..++...+..
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~ 195 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRV 195 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHH
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccc
Confidence 5 689999999999999999988 469999999999999999875 57889999999999999998 88887665665
Q ss_pred CCCcc----EEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCc-ccCcc-c-cccccceEEEEeCCccc
Q 001201 225 LSRLE----DLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM-ILPKG-L-FSKKLERYKIFIGDEWD 297 (1124)
Q Consensus 225 L~~L~----~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~-~-~~~~L~~l~l~~~~~~~ 297 (1124)
+.+++ .++++.|.+... .. .......++.+++..+... ..... + .+..++...+..+....
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i-----------~~-~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFI-----------QP-GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 263 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEE-----------CT-TTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred hhhhhhhhhhhhcccCccccc-----------Cc-ccccchhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence 55443 677777766521 11 1122234556666665432 11111 1 22333333332211100
Q ss_pred ccCCCCCceEEEEeccccchhHHHHhhcccceeeccccCCc---cccccccccccccccceeeeccCCCeeEEeeCCccc
Q 001201 298 WSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGI---KNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWV 374 (1124)
Q Consensus 298 ~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~---~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~ 374 (1124)
... .. ......+.....+..+.+...... ..... ....+.+++.+.+.++... .+ .
T Consensus 264 ~~~-l~-----------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~--~~~~~~~l~~l~~~~~~~~-~~------~ 322 (635)
T 4g8a_A 264 EGN-LE-----------KFDKSALEGLCNLTIEEFRLAYLDYYLDGIID--LFNCLTNVSSFSLVSVTIE-RV------K 322 (635)
T ss_dssp SCC-CS-----------CCCTTTTGGGGGSEEEEEEEECCCSCEEECTT--TTGGGTTCSEEEEESCEEE-EC------G
T ss_pred ccc-cc-----------cccccccccccchhhhhhhhhhhcccccchhh--hhhhhcccccccccccccc-cc------c
Confidence 000 00 000001111222222222211110 00111 1244566777776665421 11 1
Q ss_pred ccccccccceeecccccccccccccccCccccCCccEEEEccCCCcCcccchhhhhccCcccEEecccccccchhccccc
Q 001201 375 RYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGR 454 (1124)
Q Consensus 375 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~ 454 (1124)
.......|+.|++.++. +. ......++.|+.+.+.+.. ....+. ...+++|+.|++++. .+.....
T Consensus 323 ~~~~~~~L~~L~l~~~~-~~-----~~~~~~l~~L~~l~l~~n~-~~~~~~---~~~l~~L~~L~ls~n-~l~~~~~--- 388 (635)
T 4g8a_A 323 DFSYNFGWQHLELVNCK-FG-----QFPTLKLKSLKRLTFTSNK-GGNAFS---EVDLPSLEFLDLSRN-GLSFKGC--- 388 (635)
T ss_dssp GGGSCCCCSEEEEESCE-ES-----SCCCCBCTTCCEEEEESCC-SCCBCC---CCBCTTCCEEECCSS-CCBEEEE---
T ss_pred ccccchhhhhhhccccc-cc-----CcCcccchhhhhccccccc-CCCCcc---cccccccccchhhcc-ccccccc---
Confidence 23334567777776642 11 2233456777888777633 333322 346778888888763 3322210
Q ss_pred cCCcccCcccccccCccCEEeecCCCcccccccccccchhcccccceecccCCCceeecccccCcccccccccccccccc
Q 001201 455 ENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLE 534 (1124)
Q Consensus 455 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 534 (1124)
.........+|+.+++..+....... .+..+++|+.+++.++...... .......+++++
T Consensus 389 ------~~~~~~~~~~L~~L~~~~~~~~~~~~-----~~~~l~~L~~l~l~~~~~~~~~---------~~~~~~~l~~l~ 448 (635)
T 4g8a_A 389 ------CSQSDFGTISLKYLDLSFNGVITMSS-----NFLGLEQLEHLDFQHSNLKQMS---------EFSVFLSLRNLI 448 (635)
T ss_dssp ------CCHHHHSCSCCCEEECCSCSEEEECS-----CCTTCTTCCEEECTTSEEESTT---------SSCTTTTCTTCC
T ss_pred ------cccchhhhhhhhhhhccccccccccc-----cccccccccchhhhhccccccc---------cccccccccccc
Confidence 00112345677777776654332221 2456677777777776433221 111223567888
Q ss_pred eeeecccccccccccCcccccCCCccEEEEecCCCccccCcchhhhhccCCCEEEEeccccccceecccccccccceeec
Q 001201 535 TLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVF 614 (1124)
Q Consensus 535 ~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~ 614 (1124)
.+++++|.+.......+.. +++|+.|+++++.....+.| ..+..+++|+.|++++|. ++.++....+ .+
T Consensus 449 ~l~ls~n~l~~~~~~~~~~--~~~L~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~-------~l 517 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNG--LSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQ-LEQLSPTAFN-------SL 517 (635)
T ss_dssp EEECTTSCCEECCTTTTTT--CTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECTTTTT-------TC
T ss_pred ccccccccccccccccccc--chhhhhhhhhhcccccccCc-hhhhhccccCEEECCCCc-cCCcChHHHc-------CC
Confidence 8888888877666655543 78889999988766665533 457788899999999886 7776543221 57
Q ss_pred CccceeccccCcccceecCCCccCCCCcccEEEEecCCcceeecccccccccccCCccccccccceeeeeeecCCceEEe
Q 001201 615 PKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELK 694 (1124)
Q Consensus 615 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 694 (1124)
++|++|+|+++ +++.++...+. .+++|+.|+++++ +++.++...+ ....++|+.|+
T Consensus 518 ~~L~~L~Ls~N-~l~~l~~~~~~-~l~~L~~L~Ls~N-~l~~~~~~~l---------------------~~l~~~L~~L~ 573 (635)
T 4g8a_A 518 SSLQVLNMSHN-NFFSLDTFPYK-CLNSLQVLDYSLN-HIMTSKKQEL---------------------QHFPSSLAFLN 573 (635)
T ss_dssp TTCCEEECTTS-CCCBCCCGGGT-TCTTCCEEECTTS-CCCBCCSSCT---------------------TCCCTTCCEEE
T ss_pred CCCCEEECCCC-cCCCCChhHHh-CCCCCCEEECCCC-cCCCCCHHHH---------------------HhhhCcCCEEE
Confidence 88888888886 46666544433 6889999999885 6766653221 01235788888
Q ss_pred eccccc
Q 001201 695 LSGKDI 700 (1124)
Q Consensus 695 l~~~~~ 700 (1124)
+++|+.
T Consensus 574 L~~Np~ 579 (635)
T 4g8a_A 574 LTQNDF 579 (635)
T ss_dssp CTTCCB
T ss_pred eeCCCC
Confidence 887765
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=9.7e-28 Score=297.28 Aligned_cols=176 Identities=16% Similarity=0.237 Sum_probs=101.0
Q ss_pred CCcCEEEeecCCCc-cCCCCC-CCCCccEEEe-cCCCCCCC---------------------------------------
Q 001201 86 KNCPTIFLHDCKHW-EVPEGL-EYPQLEFFCM-SPRDHSIK--------------------------------------- 123 (1124)
Q Consensus 86 ~~lr~L~l~~n~i~-~l~~~~-~~~~L~~L~L-~~n~~~~~--------------------------------------- 123 (1124)
.+++.|+|+++.+. .+|+.+ .+++|++|+| ++|.+.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57888999999886 677666 8899999999 66643211
Q ss_pred -------------------------------------CChhhhcCCCCCcEEEeecCCCcc------------------C
Q 001201 124 -------------------------------------IPNHVFAGMSNLRGLALSNMQFLS------------------L 148 (1124)
Q Consensus 124 -------------------------------------~~~~~f~~l~~Lr~L~Ls~~~i~~------------------l 148 (1124)
+|.. |.++++|++|+|++|.+.. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 3332 4555555555555555555 5
Q ss_pred CcccC--CCCCCcEEEccCCCCC-Cc-ccccCcccCcEEEccCCC-CCc--cchhhhCCC-------CccEEEecCCCCC
Q 001201 149 PSLFH--LPLNLQTLCLDRCALG-DI-AIIGNLKKLEILSLVDSN-IEQ--LPEEMAQLT-------QLRLFDLSGCSKL 214 (1124)
Q Consensus 149 p~~i~--~l~~Lr~L~L~~~~l~-~l-~~i~~L~~L~~L~Ls~~~-i~~--lp~~i~~L~-------~L~~L~L~~~~~l 214 (1124)
|..++ ++++|++|+|++|.+. .+ ..++++++|++|++++|. ++. +|..++++. +|++|++++|. +
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-L 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-C
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-C
Confidence 55555 5555555555555533 22 455555555555555554 542 555554444 55555555555 4
Q ss_pred CccCc--cccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccC
Q 001201 215 KVIPP--NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILP 277 (1124)
Q Consensus 215 ~~lp~--~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 277 (1124)
..+|. . ++++++|++|++++|.+. ..+ .++.+++|+.|++++|.+..+|
T Consensus 561 ~~ip~~~~-l~~L~~L~~L~Ls~N~l~------------~lp-~~~~L~~L~~L~Ls~N~l~~lp 611 (876)
T 4ecn_A 561 EEFPASAS-LQKMVKLGLLDCVHNKVR------------HLE-AFGTNVKLTDLKLDYNQIEEIP 611 (876)
T ss_dssp CBCCCHHH-HTTCTTCCEEECTTSCCC------------BCC-CCCTTSEESEEECCSSCCSCCC
T ss_pred CccCChhh-hhcCCCCCEEECCCCCcc------------cch-hhcCCCcceEEECcCCccccch
Confidence 45554 3 555555555555555543 111 4555555555555555544333
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.3e-27 Score=292.38 Aligned_cols=190 Identities=13% Similarity=0.230 Sum_probs=153.4
Q ss_pred CCcCEEEeecCCCc-cCCCCC-CCCCccEEEecCCCC-------------------------------------------
Q 001201 86 KNCPTIFLHDCKHW-EVPEGL-EYPQLEFFCMSPRDH------------------------------------------- 120 (1124)
Q Consensus 86 ~~lr~L~l~~n~i~-~l~~~~-~~~~L~~L~L~~n~~------------------------------------------- 120 (1124)
.+++.|+++++.+. .+|+.+ .+++|++|+|++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47889999999986 677666 899999999988843
Q ss_pred -----------------------------------CCCCChhhhcCCCCCcEEEeecCCCcc------------------
Q 001201 121 -----------------------------------SIKIPNHVFAGMSNLRGLALSNMQFLS------------------ 147 (1124)
Q Consensus 121 -----------------------------------~~~~~~~~f~~l~~Lr~L~Ls~~~i~~------------------ 147 (1124)
. .+|.. |+++++|++|+|++|.+..
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~-~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEE-EECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCc-cCCHH-HhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 1 25543 6889999999999999987
Q ss_pred CCcccC--CCCCCcEEEccCCCCCC-c-ccccCcccCcEEEccCCC-CCc--cchhhhCC------CCccEEEecCCCCC
Q 001201 148 LPSLFH--LPLNLQTLCLDRCALGD-I-AIIGNLKKLEILSLVDSN-IEQ--LPEEMAQL------TQLRLFDLSGCSKL 214 (1124)
Q Consensus 148 lp~~i~--~l~~Lr~L~L~~~~l~~-l-~~i~~L~~L~~L~Ls~~~-i~~--lp~~i~~L------~~L~~L~L~~~~~l 214 (1124)
+|..++ ++++|++|+|++|.+.. + ..++++++|++|++++|. ++. +|..++++ ++|++|++++|. +
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-L 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-C
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-C
Confidence 899988 99999999999998653 3 788999999999999997 874 88888887 899999999998 7
Q ss_pred CccCc--cccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccc-cccc-cceEEE
Q 001201 215 KVIPP--NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKK-LERYKI 290 (1124)
Q Consensus 215 ~~lp~--~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~-L~~l~l 290 (1124)
..+|. . ++++++|++|++++|.+. +..+ .++.+++|+.|++++|.+..+|..+ .+.+ |+.+++
T Consensus 318 ~~ip~~~~-l~~l~~L~~L~L~~N~l~-----------g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~L 384 (636)
T 4eco_A 318 KTFPVETS-LQKMKKLGMLECLYNQLE-----------GKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384 (636)
T ss_dssp SSCCCHHH-HTTCTTCCEEECCSCCCE-----------EECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEEC
T ss_pred CccCchhh-hccCCCCCEEeCcCCcCc-----------cchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEc
Confidence 78887 5 899999999999998876 2334 7788888999999998877777655 4444 555544
Q ss_pred E
Q 001201 291 F 291 (1124)
Q Consensus 291 ~ 291 (1124)
.
T Consensus 385 s 385 (636)
T 4eco_A 385 A 385 (636)
T ss_dssp C
T ss_pred c
Confidence 4
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=6.4e-27 Score=281.18 Aligned_cols=141 Identities=16% Similarity=0.184 Sum_probs=121.3
Q ss_pred cEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC-cccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccC
Q 001201 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVD 187 (1124)
Q Consensus 111 ~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~ 187 (1124)
++|++++|.+. .+|..++ ++|++|++++|.+..++ .+|..+++||+|+|++|.+..+ ..++++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 57999999888 7887664 89999999999999886 6799999999999999999876 6899999999999999
Q ss_pred CCCCccchhhhCCCCccEEEecCCCCCCc--cCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCC--
Q 001201 188 SNIEQLPEEMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHL-- 263 (1124)
Q Consensus 188 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L-- 263 (1124)
|.++.+|.. .+.+|++|++++|. +.. +|.. ++++++|++|++++|.+. . ..+..+++|
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~-~~~l~~L~~L~L~~n~l~-----------~---~~~~~l~~L~L 140 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNA-FDALPICKE-FGNMSQLKFLGLSTTHLE-----------K---SSVLPIAHLNI 140 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSC-CSSCCCCGG-GGGCTTCCEEEEEESSCC-----------G---GGGGGGTTSCE
T ss_pred CceeecCcc--ccCCccEEeccCCc-cccccchhh-hccCCcceEEEecCcccc-----------h---hhcccccccee
Confidence 999999976 89999999999998 765 4555 899999999999999876 1 345666666
Q ss_pred CEEEeecCCC
Q 001201 264 TTLEIQICDA 273 (1124)
Q Consensus 264 ~~L~l~~~~~ 273 (1124)
+.|++++|.+
T Consensus 141 ~~L~l~~n~l 150 (520)
T 2z7x_B 141 SKVLLVLGET 150 (520)
T ss_dssp EEEEEEECTT
T ss_pred eEEEeecccc
Confidence 9999998876
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=7.4e-26 Score=274.11 Aligned_cols=455 Identities=15% Similarity=0.168 Sum_probs=281.6
Q ss_pred CcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccC
Q 001201 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDR 165 (1124)
Q Consensus 87 ~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~ 165 (1124)
..+++++++|.+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+..+ |.+|+.+++|++|+|++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 34899999999999998664 89999999999987 67777789999999999999999987 67899999999999999
Q ss_pred CCCCCcccccCcccCcEEEccCCCCCccc--hhhhCCCCccEEEecCCCCCCccCccccCCCCCc--cEEEeecccC--c
Q 001201 166 CALGDIAIIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL--EDLYMGNTSV--K 239 (1124)
Q Consensus 166 ~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L--~~L~l~~~~i--~ 239 (1124)
|.++.++.. .+.+|++|++++|.+..+| ..|+++++|++|++++|. +.... +..+.+| ++|++++|.+ .
T Consensus 110 N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 110 NRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp SCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSCCCC
T ss_pred CcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeeccccccc
Confidence 999988444 8999999999999998764 789999999999999987 65533 4555555 9999999987 3
Q ss_pred cccccccccCCCcChhhhcCCCC-CCEEEeecCCCcccCccc---cccccceEEEEeCCcccccCCCCCceEEEEecccc
Q 001201 240 WEFEGLNVGRSNASLQELKLLSH-LTTLEIQICDAMILPKGL---FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTS 315 (1124)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~l~~~~---~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~ 315 (1124)
...+..+..+.. .-.++++.|.+....... .+.+|+.+++..+.. ...
T Consensus 185 -----------~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~-----------------~~~ 236 (562)
T 3a79_B 185 -----------GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE-----------------NCQ 236 (562)
T ss_dssp -----------SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST-----------------THH
T ss_pred -----------ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccc-----------------ccc
Confidence 223444554431 113455555543221111 233344444332210 001
Q ss_pred chhH---HHHhhcccceeeccccCCcccccccc-ccccccccceeeeccCCCeeEEeeCCcccccccccccceeeccccc
Q 001201 316 NVDE---VIMQLKGIEELYLDEVPGIKNVLYDL-DIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLI 391 (1124)
Q Consensus 316 ~l~~---~~~~l~~L~~L~L~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~ 391 (1124)
.++. .+..+++++.|++.++....+.+... .....++|++|++++|.....++... + ....+.|+.|.+.++.
T Consensus 237 ~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~-~--~~~~~~L~~L~~~~~~ 313 (562)
T 3a79_B 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE-F--TYSETALKSLMIEHVK 313 (562)
T ss_dssp HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCC-C--CCCSCSCCEEEEEEEE
T ss_pred hHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchh-h--hcccccchheehhhcc
Confidence 1111 23445566666665543211111100 00123477777777775221221110 0 0001444444444432
Q ss_pred ccccccccccCcc------ccCCccEEEEccCCCcCcccchhhhhccCcccEEecccccccchhccccccCCcccCcccc
Q 001201 392 HLEKICLGQLRAE------SFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDK 465 (1124)
Q Consensus 392 ~l~~~~~~~~~~~------~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~ 465 (1124)
.... .++.. ...+|+.|+++++. +...+ ....+++|++|+++++ .+....+ ...
T Consensus 314 ~~~~----~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~---~~~~l~~L~~L~l~~n-~l~~~~~-----------~~~ 373 (562)
T 3a79_B 314 NQVF----LFSKEALYSVFAEMNIKMLSISDTP-FIHMV---CPPSPSSFTFLNFTQN-VFTDSVF-----------QGC 373 (562)
T ss_dssp ECCC----SSCHHHHHHHHHTCCCSEEEEESSC-CCCCC---CCSSCCCCCEEECCSS-CCCTTTT-----------TTC
T ss_pred ccee----ecChhhhhhhhccCcceEEEccCCC-ccccc---CccCCCCceEEECCCC-ccccchh-----------hhh
Confidence 2111 11100 12458888888754 33331 1256778888888874 3333211 123
Q ss_pred cccCccCEEeecCCCcccccccccccchhcccccceecccCCCcee-ecccccCcccccccccccccccceeeecccccc
Q 001201 466 IEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREV-ILEDECDTLMPFFNEKVVFPNLETLELCAISTE 544 (1124)
Q Consensus 466 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 544 (1124)
..+++|+.|+++++ .++.++.. ...+..+++|+.|++++|.... ++.. ....+++|++|++++|.++
T Consensus 374 ~~l~~L~~L~L~~N-~l~~~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~----------~~~~l~~L~~L~l~~n~l~ 441 (562)
T 3a79_B 374 STLKRLQTLILQRN-GLKNFFKV-ALMTKNMSSLETLDVSLNSLNSHAYDR----------TCAWAESILVLNLSSNMLT 441 (562)
T ss_dssp CSCSSCCEEECCSS-CCCBTTHH-HHTTTTCTTCCEEECTTSCCBSCCSSC----------CCCCCTTCCEEECCSSCCC
T ss_pred cccCCCCEEECCCC-CcCCcccc-hhhhcCCCCCCEEECCCCcCCCccChh----------hhcCcccCCEEECCCCCCC
Confidence 46778888888775 34433210 0125667888888888876332 2211 1224678888888888865
Q ss_pred cccccCcccccCCCccEEEEecCCCccccCcchhhhhccCCCEEEEeccccccceecccccccccceeecCccceecccc
Q 001201 545 KIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWN 624 (1124)
Q Consensus 545 ~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~ 624 (1124)
...+..+ .++|+.|++++| +++.+ |..+. .+++|+.|++++|. ++.++....+ .+++|+.|++++
T Consensus 442 ~~~~~~l----~~~L~~L~L~~N-~l~~i-p~~~~-~l~~L~~L~L~~N~-l~~l~~~~~~-------~l~~L~~L~l~~ 506 (562)
T 3a79_B 442 GSVFRCL----PPKVKVLDLHNN-RIMSI-PKDVT-HLQALQELNVASNQ-LKSVPDGVFD-------RLTSLQYIWLHD 506 (562)
T ss_dssp GGGGSSC----CTTCSEEECCSS-CCCCC-CTTTT-SSCCCSEEECCSSC-CCCCCTTSTT-------TCTTCCCEECCS
T ss_pred cchhhhh----cCcCCEEECCCC-cCccc-Chhhc-CCCCCCEEECCCCC-CCCCCHHHHh-------cCCCCCEEEecC
Confidence 4332221 158889998884 77776 54444 78889999998887 7777654111 578888888888
Q ss_pred Cc
Q 001201 625 LS 626 (1124)
Q Consensus 625 c~ 626 (1124)
++
T Consensus 507 N~ 508 (562)
T 3a79_B 507 NP 508 (562)
T ss_dssp CC
T ss_pred CC
Confidence 66
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=5.1e-26 Score=275.55 Aligned_cols=149 Identities=18% Similarity=0.258 Sum_probs=124.8
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC-cccCCCCCCcEEEccCCCCCCc--ccccCcccCcE
Q 001201 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEI 182 (1124)
Q Consensus 106 ~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~ 182 (1124)
.+...+++++++|.+. .+|..++ ++|++|++++|.+..+| .+|..+++||+|+|++|.++.+ ..|+++++|++
T Consensus 29 ~~~~~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 29 SNELESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ----CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred ccCCCcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 4555689999999888 6997664 79999999999999886 6899999999999999999876 67999999999
Q ss_pred EEccCCCCCccchhhhCCCCccEEEecCCCCCCccCc-cccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCC
Q 001201 183 LSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLS 261 (1124)
Q Consensus 183 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~ 261 (1124)
|++++|.++.+|.. .+.+|++|++++|. +..++. ..++++++|++|++++|.+. ...+..+..+
T Consensus 105 L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~-----------~~~~~~l~~L- 169 (562)
T 3a79_B 105 LDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFR-----------QLDLLPVAHL- 169 (562)
T ss_dssp EECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCC-----------TTTTGGGTTS-
T ss_pred EECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccc-----------cCchhhhhhc-
Confidence 99999999999977 89999999999998 887762 34899999999999999876 2233444444
Q ss_pred CCCEEEeecCCC
Q 001201 262 HLTTLEIQICDA 273 (1124)
Q Consensus 262 ~L~~L~l~~~~~ 273 (1124)
+|+.|++++|.+
T Consensus 170 ~L~~L~L~~n~l 181 (562)
T 3a79_B 170 HLSCILLDLVSY 181 (562)
T ss_dssp CEEEEEEEESSC
T ss_pred eeeEEEeecccc
Confidence 459999999886
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.5e-26 Score=282.86 Aligned_cols=272 Identities=14% Similarity=0.111 Sum_probs=140.5
Q ss_pred CCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCc-------------cCCcccCCCCCCcEEEccCCCCCC-c-c
Q 001201 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-------------SLPSLFHLPLNLQTLCLDRCALGD-I-A 172 (1124)
Q Consensus 108 ~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~-------------~lp~~i~~l~~Lr~L~L~~~~l~~-l-~ 172 (1124)
.+++.|+|+++.+.+.+|.. |+++++|++|+|++|.+. .+|... +.+|| ++++++.+.. + .
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~-l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGG-GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChH-HhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchh
Confidence 47899999999988888864 589999999999999652 222221 23344 4443333221 1 1
Q ss_pred cccC-------------------cccCcEEEcc--CCCCCccchhhhCCCCccEEEecCCCCCCc---------------
Q 001201 173 IIGN-------------------LKKLEILSLV--DSNIEQLPEEMAQLTQLRLFDLSGCSKLKV--------------- 216 (1124)
Q Consensus 173 ~i~~-------------------L~~L~~L~Ls--~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~--------------- 216 (1124)
.++. ...++.+.+. +|+++.+|..++++++|++|++++|. +..
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYA 235 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHH
T ss_pred hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchh
Confidence 1110 0111111111 34455566666666666666666666 555
Q ss_pred ---cCccccC--CCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCC-Ccc--cCccc-cccccce
Q 001201 217 ---IPPNLLS--GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD-AMI--LPKGL-FSKKLER 287 (1124)
Q Consensus 217 ---lp~~~i~--~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~--l~~~~-~~~~L~~ 287 (1124)
+|.. ++ ++++|++|++++|.+. +..+..++++++|+.|++++|. +.. +|..+ .+.
T Consensus 236 ~~~ip~~-l~~~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~---- 299 (636)
T 4eco_A 236 QQYKTED-LKWDNLKDLTDVEVYNCPNL-----------TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA---- 299 (636)
T ss_dssp HHHTTSC-CCGGGCTTCCEEEEECCTTC-----------SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHH----
T ss_pred cccCchh-hhhcccCCCCEEEecCCcCC-----------ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhh----
Confidence 6655 56 6666666666666654 3445566666666666666665 431 33221 000
Q ss_pred EEEEeCCcccccCCCCCceEEEEeccccchhHHHHhhcccceeeccccCCccccccccccccccccceeeeccCCCeeEE
Q 001201 288 YKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFI 367 (1124)
Q Consensus 288 l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l 367 (1124)
....+++|+.|+++++... .++..-.+..+++|++|++++|.....+
T Consensus 300 --------------------------------~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 300 --------------------------------DAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp --------------------------------HSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred --------------------------------ccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch
Confidence 0001245555555544322 2221001245556666666665422122
Q ss_pred eeCCcccccccccccceeecccccccccccccccCccccCC-ccEEEEccCCCcCcccchhhhhccCcccEEeccccc
Q 001201 368 VDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYK-LKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCK 444 (1124)
Q Consensus 368 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~L~~c~ 444 (1124)
+ ....+++|+.|+++++ .+..+ +.....+++ |+.|+++++. ++.+|..-....+++|++|+++++.
T Consensus 347 p------~~~~l~~L~~L~L~~N-~l~~l---p~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 347 P------AFGSEIKLASLNLAYN-QITEI---PANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp C------CCEEEEEESEEECCSS-EEEEC---CTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSC
T ss_pred h------hhCCCCCCCEEECCCC-ccccc---cHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCc
Confidence 1 2334455555555553 22222 112345566 7777777643 5555542111223467777777743
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2e-26 Score=285.50 Aligned_cols=37 Identities=8% Similarity=0.221 Sum_probs=25.5
Q ss_pred CCccEEEecCCCCCCCCChhhhcCCCCCcEEEe-ecCCC
Q 001201 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLAL-SNMQF 145 (1124)
Q Consensus 108 ~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~L-s~~~i 145 (1124)
.++..|+|+++.+.+.+|+. |+++++|++|+| ++|.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~-l~~L~~L~~LdLss~N~l 360 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSET 360 (876)
T ss_dssp SCEEEEECTTTCCEEEECGG-GGGCTTCCEEESCCTTHH
T ss_pred CCEEEEECccCCCCCcCchH-HhccccceEeeecccccc
Confidence 46777777777777667654 477777777777 66543
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.3e-25 Score=262.92 Aligned_cols=168 Identities=20% Similarity=0.248 Sum_probs=124.2
Q ss_pred CCCcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEcc
Q 001201 85 LKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLD 164 (1124)
Q Consensus 85 ~~~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~ 164 (1124)
+.+++.|++.++.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..++. ++.+++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 5678888888888887776447788888888888766 4554 6788888888888888877765 7788888888888
Q ss_pred CCCCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccccc
Q 001201 165 RCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (1124)
Q Consensus 165 ~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~ 244 (1124)
+|.+..+..++++++|++|++++|.+..+| .++.+.+|++|+++++ +..++. ++++++|++|++++|.+.
T Consensus 121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~----- 190 (466)
T 1o6v_A 121 NNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVS----- 190 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCC-----
T ss_pred CCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCC-----
Confidence 888777766778888888888888777776 4777888888887632 444443 677788888888777765
Q ss_pred ccccCCCcChhhhcCCCCCCEEEeecCCCc
Q 001201 245 LNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (1124)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (1124)
.+..+..+++|++|++++|.+.
T Consensus 191 --------~~~~l~~l~~L~~L~l~~n~l~ 212 (466)
T 1o6v_A 191 --------DISVLAKLTNLESLIATNNQIS 212 (466)
T ss_dssp --------CCGGGGGCTTCSEEECCSSCCC
T ss_pred --------CChhhccCCCCCEEEecCCccc
Confidence 2344677777777777777643
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.4e-24 Score=256.26 Aligned_cols=348 Identities=20% Similarity=0.246 Sum_probs=221.6
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEc
Q 001201 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (1124)
Q Consensus 106 ~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L 185 (1124)
.+++++.|++.++.+. .++. |..+++|++|++++|.+..+|. ++.+++|++|++++|.+..+..++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEEC
Confidence 3578999999998876 5764 6789999999999999999876 9999999999999999988866999999999999
Q ss_pred cCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCE
Q 001201 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (1124)
Q Consensus 186 s~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (1124)
++|.+..+|. ++++++|++|++++|. +..++. ++++++|++|+++++ +. ....++++++|+.
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~-~~-------------~~~~~~~l~~L~~ 181 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQ-VT-------------DLKPLANLTTLER 181 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEES-CC-------------CCGGGTTCTTCCE
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCc-cc-------------CchhhccCCCCCE
Confidence 9999999876 8999999999999998 878774 899999999999743 22 2345888999999
Q ss_pred EEeecCCCcccCccccccccceEEEEeCCcccccCCCCCceEEEEeccccchhHHHHhhcccceeeccccCCcccccccc
Q 001201 266 LEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDL 345 (1124)
Q Consensus 266 L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 345 (1124)
|++++|.+..++. +..+++|+.|+++++.. ....+
T Consensus 182 L~l~~n~l~~~~~------------------------------------------l~~l~~L~~L~l~~n~l-~~~~~-- 216 (466)
T 1o6v_A 182 LDISSNKVSDISV------------------------------------------LAKLTNLESLIATNNQI-SDITP-- 216 (466)
T ss_dssp EECCSSCCCCCGG------------------------------------------GGGCTTCSEEECCSSCC-CCCGG--
T ss_pred EECcCCcCCCChh------------------------------------------hccCCCCCEEEecCCcc-ccccc--
Confidence 9999887644321 12244566666655432 11111
Q ss_pred ccccccccceeeeccCCCeeEEeeCCcccccccccccceeecccccccccccccccCccccCCccEEEEccCCCcCcccc
Q 001201 346 DIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFS 425 (1124)
Q Consensus 346 ~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~ 425 (1124)
.+.+++|+.|++++|. +..+ ..... +++|+.|++++| .+..+++
T Consensus 217 -~~~l~~L~~L~l~~n~-l~~~------~~l~~---------------------------l~~L~~L~l~~n-~l~~~~~ 260 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQ-LKDI------GTLAS---------------------------LTNLTDLDLANN-QISNLAP 260 (466)
T ss_dssp -GGGCTTCCEEECCSSC-CCCC------GGGGG---------------------------CTTCSEEECCSS-CCCCCGG
T ss_pred -ccccCCCCEEECCCCC-cccc------hhhhc---------------------------CCCCCEEECCCC-ccccchh
Confidence 2456677777777664 1111 12233 344444444443 2333322
Q ss_pred hhhhhccCcccEEecccccccchhccccccCCcccCcccccccCccCEEeecCCCcccccccccccchhcccccceeccc
Q 001201 426 FSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTH 505 (1124)
Q Consensus 426 ~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 505 (1124)
+..+++|++|++++| .+..++ ....+++|+.|+++++. +..++. +..+++|+.|+++
T Consensus 261 ---~~~l~~L~~L~l~~n-~l~~~~-------------~~~~l~~L~~L~L~~n~-l~~~~~-----~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 261 ---LSGLTKLTELKLGAN-QISNIS-------------PLAGLTALTNLELNENQ-LEDISP-----ISNLKNLTYLTLY 317 (466)
T ss_dssp ---GTTCTTCSEEECCSS-CCCCCG-------------GGTTCTTCSEEECCSSC-CSCCGG-----GGGCTTCSEEECC
T ss_pred ---hhcCCCCCEEECCCC-ccCccc-------------cccCCCccCeEEcCCCc-ccCchh-----hcCCCCCCEEECc
Confidence 344455555555542 222222 11234455555554432 222221 3344555555555
Q ss_pred CCCceeecccccCcccccccccccccccceeeecccccccccccCcccccCCCccEEEEecCCCccccCcchhhhhccCC
Q 001201 506 TLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQL 585 (1124)
Q Consensus 506 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L 585 (1124)
+|.....+ ....+++|++|++++|.+..+. .+ ..+++|+.|++++| .++...| +..+++|
T Consensus 318 ~n~l~~~~------------~~~~l~~L~~L~l~~n~l~~~~--~l--~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L 377 (466)
T 1o6v_A 318 FNNISDIS------------PVSSLTKLQRLFFYNNKVSDVS--SL--ANLTNINWLSAGHN-QISDLTP---LANLTRI 377 (466)
T ss_dssp SSCCSCCG------------GGGGCTTCCEEECCSSCCCCCG--GG--TTCTTCCEEECCSS-CCCBCGG---GTTCTTC
T ss_pred CCcCCCch------------hhccCccCCEeECCCCccCCch--hh--ccCCCCCEEeCCCC-ccCccch---hhcCCCC
Confidence 55311111 1224667777777777655541 12 23677777777774 4555433 5667777
Q ss_pred CEEEEecccccccee
Q 001201 586 EHLEICYCSSLESIV 600 (1124)
Q Consensus 586 ~~L~l~~C~~l~~i~ 600 (1124)
+.|++++|+ +..+|
T Consensus 378 ~~L~l~~n~-~~~~p 391 (466)
T 1o6v_A 378 TQLGLNDQA-WTNAP 391 (466)
T ss_dssp CEEECCCEE-EECCC
T ss_pred CEEeccCCc-ccCCc
Confidence 777777776 54443
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=3e-24 Score=253.36 Aligned_cols=155 Identities=25% Similarity=0.379 Sum_probs=83.3
Q ss_pred CCCCcCEEEeecCCCccCCC-CC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcE
Q 001201 84 MLKNCPTIFLHDCKHWEVPE-GL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQT 160 (1124)
Q Consensus 84 ~~~~lr~L~l~~n~i~~l~~-~~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~ 160 (1124)
..+++++|++++|.+..++. .+ ++++|++|++++|.+...++...|.++++|++|++++|.+..+ |..|+.+++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 34556666666666655432 22 5566666666666554445555555666666666666665544 455566666666
Q ss_pred EEccCCCCCC--cc--cccCcccCcEEEccCCCCCcc-chh-hhCCCCccEEEecCCCCCCccCccccCCC--CCccEEE
Q 001201 161 LCLDRCALGD--IA--IIGNLKKLEILSLVDSNIEQL-PEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGL--SRLEDLY 232 (1124)
Q Consensus 161 L~L~~~~l~~--l~--~i~~L~~L~~L~Ls~~~i~~l-p~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L--~~L~~L~ 232 (1124)
|+|++|.+.. +. .++++++|++|++++|.+..+ |.. ++++++|++|++++|. +..++...+..+ .+|+.|+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEE
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccc
Confidence 6666665553 22 255556666666666655554 333 5556666666666555 444333323333 3455555
Q ss_pred eecccCc
Q 001201 233 MGNTSVK 239 (1124)
Q Consensus 233 l~~~~i~ 239 (1124)
+++|.+.
T Consensus 187 l~~n~l~ 193 (455)
T 3v47_A 187 LSSITLQ 193 (455)
T ss_dssp CTTCBCT
T ss_pred cccCccc
Confidence 5555443
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=4.3e-25 Score=257.68 Aligned_cols=148 Identities=18% Similarity=0.163 Sum_probs=78.4
Q ss_pred CCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCc-cCCcccCCCCCC-------------cEEEccCCCCCC
Q 001201 105 LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPSLFHLPLNL-------------QTLCLDRCALGD 170 (1124)
Q Consensus 105 ~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~-~lp~~i~~l~~L-------------r~L~L~~~~l~~ 170 (1124)
+..+.|++|++++|.+ +.+|.. |+++++|++|++++|.+. .+|.+++.+++| ++|++++|.++.
T Consensus 8 ~~~~~L~~L~l~~n~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNL-TEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred cccccchhhhcccCch-hhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 3456677777777766 466655 477777777777777765 567777776654 777777777665
Q ss_pred cccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCC
Q 001201 171 IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRS 250 (1124)
Q Consensus 171 l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~ 250 (1124)
+..+ ..+|++|++++|.++.+|.. +.+|++|++++|. +..+|.. .++|++|++++|.+.
T Consensus 86 lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~----~~~L~~L~L~~n~l~----------- 144 (454)
T 1jl5_A 86 LPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL----PPLLEYLGVSNNQLE----------- 144 (454)
T ss_dssp CCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC----CTTCCEEECCSSCCS-----------
T ss_pred CCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC----CCCCCEEECcCCCCC-----------
Confidence 5332 35677777777777766642 3667777777776 6655531 156777777777655
Q ss_pred CcChhhhcCCCCCCEEEeecCCCcccC
Q 001201 251 NASLQELKLLSHLTTLEIQICDAMILP 277 (1124)
Q Consensus 251 ~~~~~~l~~l~~L~~L~l~~~~~~~l~ 277 (1124)
. +.+++++++|++|++++|.+..+|
T Consensus 145 ~--lp~~~~l~~L~~L~l~~N~l~~lp 169 (454)
T 1jl5_A 145 K--LPELQNSSFLKIIDVDNNSLKKLP 169 (454)
T ss_dssp S--CCCCTTCTTCCEEECCSSCCSCCC
T ss_pred C--CcccCCCCCCCEEECCCCcCcccC
Confidence 1 124666777777777776655443
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=2.8e-23 Score=242.58 Aligned_cols=167 Identities=14% Similarity=0.142 Sum_probs=131.7
Q ss_pred cCCCCcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEE
Q 001201 83 DMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (1124)
Q Consensus 83 ~~~~~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~ 162 (1124)
..++++++|++++|.+..+|....+++|++|++++|.+. .++ |.++++|++|++++|.+..+| ++.+++|++|+
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 346788899998888888874447888888888888876 354 678888888888888888875 78888888888
Q ss_pred ccCCCCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccc
Q 001201 163 LDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (1124)
Q Consensus 163 L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~ 242 (1124)
+++|.+..+. ++.+++|++|++++|.++.+| ++++++|++|++++|..+..++ ++.+++|++|++++|.+.
T Consensus 113 L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~--- 183 (457)
T 3bz5_A 113 CDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT--- 183 (457)
T ss_dssp CCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC---
T ss_pred CCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc---
Confidence 8888887764 788888888888888888875 7888888888888886577663 678888888888888776
Q ss_pred ccccccCCCcChhhhcCCCCCCEEEeecCCCcc
Q 001201 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMI 275 (1124)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 275 (1124)
. +. ++.+++|+.|++++|.+..
T Consensus 184 --------~--l~-l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 184 --------E--LD-VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp --------C--CC-CTTCTTCCEEECCSSCCSC
T ss_pred --------e--ec-cccCCCCCEEECcCCcCCe
Confidence 1 11 6677888888888777543
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=5.8e-24 Score=248.36 Aligned_cols=264 Identities=17% Similarity=0.144 Sum_probs=188.1
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEc
Q 001201 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (1124)
Q Consensus 106 ~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L 185 (1124)
.+++|++|++++|.+. .+| .|..+++|++|++++|.+..+| ++.+++|++|++++|.+..++ ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 4678889999888877 455 3678888999999999888876 888889999999988888774 888888999999
Q ss_pred cCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCE
Q 001201 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (1124)
Q Consensus 186 s~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (1124)
++|.++.+| ++++++|++|++++|. +..++ ++++++|++|++++|... .. + .++.+++|+.
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~-----------~~-~-~~~~l~~L~~ 174 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKI-----------TK-L-DVTPQTQLTT 174 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCC-----------CC-C-CCTTCTTCCE
T ss_pred CCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCcc-----------cc-c-ccccCCcCCE
Confidence 998888886 8888899999998887 77774 688888999998888533 11 1 4677888889
Q ss_pred EEeecCCCcccCccccccccceEEEEeCCcccccCCCCCceEEEEeccccchhHHHHhhcccceeeccccCCcccccccc
Q 001201 266 LEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDL 345 (1124)
Q Consensus 266 L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 345 (1124)
|++++|.+..++ ...+++|+.+.+..+.+- .+ .++.+++|+.|+++++.... ++
T Consensus 175 L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~-------------------~~--~l~~l~~L~~L~Ls~N~l~~--ip-- 228 (457)
T 3bz5_A 175 LDCSFNKITELD-VSQNKLLNRLNCDTNNIT-------------------KL--DLNQNIQLTFLDCSSNKLTE--ID-- 228 (457)
T ss_dssp EECCSSCCCCCC-CTTCTTCCEEECCSSCCS-------------------CC--CCTTCTTCSEEECCSSCCSC--CC--
T ss_pred EECCCCccceec-cccCCCCCEEECcCCcCC-------------------ee--ccccCCCCCEEECcCCcccc--cC--
Confidence 999888887765 224566666665544331 11 12346778888887754322 22
Q ss_pred ccccccccceeeeccCCCeeEEeeCCcccccccccccceeecccccccccccccccCccccCCccEEEEccCCCcCcccc
Q 001201 346 DIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFS 425 (1124)
Q Consensus 346 ~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~ 425 (1124)
+..+++|+.|++++|. +..+ ....+++|+.|++.+ .+|+.|++++|..+..+|
T Consensus 229 -~~~l~~L~~L~l~~N~-l~~~-------~~~~l~~L~~L~l~~-----------------n~L~~L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNP-LTEL-------DVSTLSKLTTLHCIQ-----------------TDLLEIDLTHNTQLIYFQ- 281 (457)
T ss_dssp -CTTCTTCSEEECCSSC-CSCC-------CCTTCTTCCEEECTT-----------------CCCSCCCCTTCTTCCEEE-
T ss_pred -ccccCCCCEEEeeCCc-CCCc-------CHHHCCCCCEEeccC-----------------CCCCEEECCCCccCCccc-
Confidence 3678888888888886 2221 134566666665543 246666777766555553
Q ss_pred hhhhhccCcccEEecccccccchhc
Q 001201 426 FSFVRGLPQLQTLNVINCKNMKEIF 450 (1124)
Q Consensus 426 ~~~~~~l~~L~~L~L~~c~~l~~i~ 450 (1124)
...+++|+.|++++|..+..++
T Consensus 282 ---~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 282 ---AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp ---CTTCTTCCCCCCTTCTTCCEEE
T ss_pred ---ccccccCCEEECCCCcccceec
Confidence 3567788888888877666665
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=2.6e-24 Score=251.14 Aligned_cols=167 Identities=20% Similarity=0.192 Sum_probs=114.8
Q ss_pred CCCCcCEEEeecCCCccCCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCC-------------CcEEEeecCCCccCC
Q 001201 84 MLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSN-------------LRGLALSNMQFLSLP 149 (1124)
Q Consensus 84 ~~~~lr~L~l~~n~i~~l~~~~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~-------------Lr~L~Ls~~~i~~lp 149 (1124)
....++.+++++|.+..+|..+ ++++|++|++++|.+.+.+|..+ +++++ +++|++++|.+..+|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 3578999999999999999877 89999999999998876777653 66665 499999999999888
Q ss_pred cccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCcc
Q 001201 150 SLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLE 229 (1124)
Q Consensus 150 ~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~ 229 (1124)
.. .++|++|++++|.++.+.. .+.+|++|++++|.++.+|.. ..+|++|++++|. +..+| + ++++++|+
T Consensus 88 ~~---~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~-~~~l~~L~ 156 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-E-LQNSSFLK 156 (454)
T ss_dssp SC---CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-C-CTTCTTCC
T ss_pred CC---cCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-c-cCCCCCCC
Confidence 63 4789999999999887743 247899999999999887742 2789999999998 88888 4 89999999
Q ss_pred EEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccC
Q 001201 230 DLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILP 277 (1124)
Q Consensus 230 ~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 277 (1124)
+|++++|.+.. .+. ...+|++|++++|.+..+|
T Consensus 157 ~L~l~~N~l~~------------lp~---~~~~L~~L~L~~n~l~~l~ 189 (454)
T 1jl5_A 157 IIDVDNNSLKK------------LPD---LPPSLEFIAAGNNQLEELP 189 (454)
T ss_dssp EEECCSSCCSC------------CCC---CCTTCCEEECCSSCCSSCC
T ss_pred EEECCCCcCcc------------cCC---CcccccEEECcCCcCCcCc
Confidence 99999998761 111 1248999999999887765
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.5e-23 Score=235.79 Aligned_cols=174 Identities=16% Similarity=0.245 Sum_probs=127.8
Q ss_pred cCCCCcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEE
Q 001201 83 DMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (1124)
Q Consensus 83 ~~~~~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~ 162 (1124)
..++++++|+++++.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..+| ++..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 346778888888888887776447788888888888766 4554 678888888888888877765 577888888888
Q ss_pred ccCCCCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccc
Q 001201 163 LDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (1124)
Q Consensus 163 L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~ 242 (1124)
+++|.+..+..+..+++|++|++++|.....+..+..+++|++|++++|. +..++. ++.+++|++|++++|.+.
T Consensus 117 l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~--- 190 (347)
T 4fmz_A 117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIE--- 190 (347)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCC---
T ss_pred CcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccc---
Confidence 88888777766778888888888887444334457788888888888877 666665 677888888888877765
Q ss_pred ccccccCCCcChhhhcCCCCCCEEEeecCCCccc
Q 001201 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMIL 276 (1124)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 276 (1124)
.+..+..+++|+.|++++|.+...
T Consensus 191 ----------~~~~~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 191 ----------DISPLASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp ----------CCGGGGGCTTCCEEECCSSCCCCC
T ss_pred ----------ccccccCCCccceeecccCCCCCC
Confidence 223367777788888777765433
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=3.4e-23 Score=234.67 Aligned_cols=303 Identities=18% Similarity=0.248 Sum_probs=211.6
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEc
Q 001201 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (1124)
Q Consensus 106 ~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L 185 (1124)
.+++|++|+++++.+. .++. |..+++|++|++++|.+..+|. +..+++|++|++++|.+..+..+.++++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEEC
Confidence 5677888888887765 4553 5778888888888888887765 7888888888888888887777888888888888
Q ss_pred cCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCE
Q 001201 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (1124)
Q Consensus 186 s~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (1124)
++|.+..+|. +..+++|++|++++|..+..++. +..+++|++|++++|.+. ....+..+++|+.
T Consensus 118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~-------------~~~~~~~l~~L~~ 181 (347)
T 4fmz_A 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK-------------DVTPIANLTDLYS 181 (347)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC-------------CCGGGGGCTTCSE
T ss_pred cCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcC-------------CchhhccCCCCCE
Confidence 8888887776 78888888888888865665554 788888888888887765 2223777888888
Q ss_pred EEeecCCCcccCccccccccceEEEEeCCcccccCCCCCceEEEEeccccchhHHHHhhcccceeeccccCCcccccccc
Q 001201 266 LEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDL 345 (1124)
Q Consensus 266 L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 345 (1124)
|++++|.+..++....+.+|+.+.+..+.+ ..++. +..+++|+.|+++++... ...+
T Consensus 182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l-------------------~~~~~-~~~~~~L~~L~l~~n~l~-~~~~-- 238 (347)
T 4fmz_A 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQI-------------------TDITP-VANMTRLNSLKIGNNKIT-DLSP-- 238 (347)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCC-------------------CCCGG-GGGCTTCCEEECCSSCCC-CCGG--
T ss_pred EEccCCcccccccccCCCccceeecccCCC-------------------CCCch-hhcCCcCCEEEccCCccC-CCcc--
Confidence 888888877666533555666665544332 11111 345667777777765332 2222
Q ss_pred ccccccccceeeeccCCCeeEEeeCCcccccccccccceeecccccccccccccccCccccCCccEEEEccCCCcCcccc
Q 001201 346 DIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFS 425 (1124)
Q Consensus 346 ~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~ 425 (1124)
...+++|++|++++|. +..+ .....+++|+.|+++++ .+..+ .....+++|+.|++++|. ++..++
T Consensus 239 -~~~l~~L~~L~l~~n~-l~~~------~~~~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~L~~n~-l~~~~~ 304 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQ-ISDI------NAVKDLTKLKMLNVGSN-QISDI----SVLNNLSQLNSLFLNNNQ-LGNEDM 304 (347)
T ss_dssp -GTTCTTCCEEECCSSC-CCCC------GGGTTCTTCCEEECCSS-CCCCC----GGGGGCTTCSEEECCSSC-CCGGGH
T ss_pred -hhcCCCCCEEECCCCc-cCCC------hhHhcCCCcCEEEccCC-ccCCC----hhhcCCCCCCEEECcCCc-CCCcCh
Confidence 3677888888888875 2221 33556778888888775 44433 123477889999998864 555544
Q ss_pred hhhhhccCcccEEecccccccchhccccccCCcccCcccccccCccCEEeecCCC
Q 001201 426 FSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLP 480 (1124)
Q Consensus 426 ~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 480 (1124)
..+..+++|++|++++|+ +..++ ....+++|+.|++++++
T Consensus 305 -~~l~~l~~L~~L~L~~n~-l~~~~-------------~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 305 -EVIGGLTNLTTLFLSQNH-ITDIR-------------PLASLSKMDSADFANQV 344 (347)
T ss_dssp -HHHHTCTTCSEEECCSSS-CCCCG-------------GGGGCTTCSEESSSCC-
T ss_pred -hHhhccccCCEEEccCCc-ccccc-------------Chhhhhccceeehhhhc
Confidence 457788999999999864 55554 24578899999998875
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=9.8e-23 Score=234.72 Aligned_cols=154 Identities=16% Similarity=0.284 Sum_probs=122.8
Q ss_pred CCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC-cccCCCCCCcEEEccCCCCCCc--ccccCcccCc
Q 001201 105 LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLE 181 (1124)
Q Consensus 105 ~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~ 181 (1124)
..++++++|++.+|.+. .+|..+|.++++|++|++++|.+..+| .+|..+++|++|+|++|.+..+ ..++++++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 35678888888888766 688888888888999999888888775 4788888889998888888766 5578888888
Q ss_pred EEEccCCCCCccchh-hhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCC
Q 001201 182 ILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLL 260 (1124)
Q Consensus 182 ~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l 260 (1124)
+|++++|.++.+|.. ++++++|++|++++|. +..++...++++++|++|++++|.+. .. .++.+
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~---~~~~l 185 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT-----------HV---DLSLI 185 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCS-----------BC---CGGGC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCC-----------cc---ccccc
Confidence 888888888888875 5888888888888887 77777666888888888888888776 11 35567
Q ss_pred CCCCEEEeecCCCc
Q 001201 261 SHLTTLEIQICDAM 274 (1124)
Q Consensus 261 ~~L~~L~l~~~~~~ 274 (1124)
++|+.|++++|.+.
T Consensus 186 ~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 186 PSLFHANVSYNLLS 199 (390)
T ss_dssp TTCSEEECCSSCCS
T ss_pred cccceeeccccccc
Confidence 77888888777643
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.2e-22 Score=241.00 Aligned_cols=176 Identities=22% Similarity=0.320 Sum_probs=137.2
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccCCC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 167 (1124)
+.++.+++.+..+|..+ .+++++|+|++|.+. .++...|.++++|++|+|++|.+..+ |.+|+++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 46777777788887765 367888888888876 56666778888888888888888876 6778888888888888888
Q ss_pred CCCc--ccccCcccCcEEEccCCCCCcc-chhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccccc
Q 001201 168 LGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (1124)
Q Consensus 168 l~~l--~~i~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~ 244 (1124)
+..+ ..++++.+|++|++++|.+..+ |..|.++.+|++|++++|. +..++...++++++|++|++++|.+.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~----- 165 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLT----- 165 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCS-----
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCc-----
Confidence 8876 4578888888888888888866 4578888888888888887 77776656888888888888888776
Q ss_pred ccccCCCcChhhhcCCCCCCEEEeecCCCcccCc
Q 001201 245 LNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (1124)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 278 (1124)
......+..+++|+.|++++|.+..++.
T Consensus 166 ------~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 166 ------SIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp ------SCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred ------ccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 3344567888888888888887655443
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=9.4e-23 Score=234.85 Aligned_cols=302 Identities=19% Similarity=0.213 Sum_probs=223.1
Q ss_pred CCCCcCEEEeecCCCccCCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcE
Q 001201 84 MLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQT 160 (1124)
Q Consensus 84 ~~~~lr~L~l~~n~i~~l~~~~--~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~ 160 (1124)
...+++++++++|.+..+|... .+++|++|++++|.+. .++...|.++++|++|++++|.+..+ |..++.+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3688999999999999999865 7999999999999887 67777889999999999999999988 456899999999
Q ss_pred EEccCCCCCCc--ccccCcccCcEEEccCCCCCccc-hhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeeccc
Q 001201 161 LCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (1124)
Q Consensus 161 L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 237 (1124)
|+|++|.+..+ ..++++++|++|++++|.+..++ ..++.+++|++|++++|. +..++ ++.+++|++|++++|.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeeccccc
Confidence 99999999988 34799999999999999999885 469999999999999998 88776 5778999999999987
Q ss_pred CccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEEeCCcccccCCCCCceEEEEeccccch
Q 001201 238 VKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNV 317 (1124)
Q Consensus 238 i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l 317 (1124)
+. .+....+|+.|++++|.+..++...
T Consensus 198 l~----------------~~~~~~~L~~L~l~~n~l~~~~~~~------------------------------------- 224 (390)
T 3o6n_A 198 LS----------------TLAIPIAVEELDASHNSINVVRGPV------------------------------------- 224 (390)
T ss_dssp CS----------------EEECCSSCSEEECCSSCCCEEECCC-------------------------------------
T ss_pred cc----------------ccCCCCcceEEECCCCeeeeccccc-------------------------------------
Confidence 65 3345568999999999876554422
Q ss_pred hHHHHhhcccceeeccccCCccccccccccccccccceeeeccCCCeeEEeeCCcccccccccccceeeccccccccccc
Q 001201 318 DEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKIC 397 (1124)
Q Consensus 318 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 397 (1124)
.++|+.|+++++... . .+. +..+++|++|++++|. +..+.. ..+..+++|+.|+++++ .++.+.
T Consensus 225 ------~~~L~~L~l~~n~l~-~-~~~--l~~l~~L~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L~L~~n-~l~~~~ 288 (390)
T 3o6n_A 225 ------NVELTILKLQHNNLT-D-TAW--LLNYPGLVEVDLSYNE-LEKIMY----HPFVKMQRLERLYISNN-RLVALN 288 (390)
T ss_dssp ------CSSCCEEECCSSCCC-C-CGG--GGGCTTCSEEECCSSC-CCEEES----GGGTTCSSCCEEECCSS-CCCEEE
T ss_pred ------cccccEEECCCCCCc-c-cHH--HcCCCCccEEECCCCc-CCCcCh----hHccccccCCEEECCCC-cCcccC
Confidence 234555555554321 1 122 2567778888887775 222211 22445667777777663 344331
Q ss_pred ccccCccccCCccEEEEccCCCcCcccchhhhhccCcccEEecccccccchhccccccCCcccCcccccccCccCEEeec
Q 001201 398 LGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLK 477 (1124)
Q Consensus 398 ~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 477 (1124)
.....+++|+.|++++| +++.++. .+..+++|++|+++++ .+..++ ...+++|+.|+++
T Consensus 289 ---~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N-~i~~~~--------------~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 289 ---LYGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHN-SIVTLK--------------LSTHHTLKNLTLS 347 (390)
T ss_dssp ---CSSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSS-CCCCCC--------------CCTTCCCSEEECC
T ss_pred ---cccCCCCCCCEEECCCC-cceecCc--cccccCcCCEEECCCC-ccceeC--------------chhhccCCEEEcC
Confidence 12235677888888775 4666654 2566778888888774 344332 2456677777777
Q ss_pred CCC
Q 001201 478 FLP 480 (1124)
Q Consensus 478 ~~~ 480 (1124)
+++
T Consensus 348 ~N~ 350 (390)
T 3o6n_A 348 HND 350 (390)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.8e-22 Score=238.03 Aligned_cols=149 Identities=20% Similarity=0.263 Sum_probs=117.6
Q ss_pred cEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccCCCCC-Cc--ccccCcccCcEEEcc
Q 001201 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALG-DI--AIIGNLKKLEILSLV 186 (1124)
Q Consensus 111 ~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~-~l--~~i~~L~~L~~L~Ls 186 (1124)
+.++.+++.+. .+|. + .++|++|+|++|.+..+ |..|+++++||+|+|++|.+. .+ ..+.++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 35666666655 6775 2 37899999999999877 778999999999999999875 33 668999999999999
Q ss_pred CCCCCcc-chhhhCCCCccEEEecCCCCCCc--cCccccCCCCCccEEEeecccCccccccccccCCCcChhh-hcCCCC
Q 001201 187 DSNIEQL-PEEMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQE-LKLLSH 262 (1124)
Q Consensus 187 ~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~-l~~l~~ 262 (1124)
+|.+..+ |..|+++++|++|++++|. +.. .+...++++++|++|++++|.+. ...+.. ++++++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~~l~~ 155 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIK-----------KIQPASFFLNMRR 155 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCC-----------SCCCCGGGGGCTT
T ss_pred CCccCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccC-----------ccCcccccCCCCc
Confidence 9998876 6789999999999999998 654 33334788999999999998876 223333 788889
Q ss_pred CCEEEeecCCCccc
Q 001201 263 LTTLEIQICDAMIL 276 (1124)
Q Consensus 263 L~~L~l~~~~~~~l 276 (1124)
|++|++++|.+...
T Consensus 156 L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 156 FHVLDLTFNKVKSI 169 (455)
T ss_dssp CCEEECTTCCBSCC
T ss_pred ccEEeCCCCccccc
Confidence 99999988876544
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1e-21 Score=232.91 Aligned_cols=305 Identities=19% Similarity=0.230 Sum_probs=213.4
Q ss_pred ecCCcccCCCcccCCCCcCEEEeecCCCccCCCC-C-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC
Q 001201 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (1124)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~-~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l 148 (1124)
+.+.+...+|. ....++++|++++|.+..++.. + ++++|++|+|++|.+. .++...|.++++|++|+|++|.+..+
T Consensus 18 c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 95 (477)
T 2id5_A 18 CHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLI 95 (477)
T ss_dssp CCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred eCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCcc
Confidence 34445555553 5678999999999999988653 3 8999999999999887 56667789999999999999999999
Q ss_pred Cc-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCcc-chhhhCCCCccEEEecCCCCCCccCccccCC
Q 001201 149 PS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSG 224 (1124)
Q Consensus 149 p~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~ 224 (1124)
|. .|..+++|++|+|++|.+..+ ..+.++.+|++|++++|.+..+ |..|+.+.+|++|++++|. +..++...+.+
T Consensus 96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~ 174 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSH 174 (477)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTT
T ss_pred CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcc
Confidence 75 579999999999999999866 6799999999999999999977 4589999999999999998 99999877999
Q ss_pred CCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCC-cccCccccccccceEEEEeCCcccccCCCC
Q 001201 225 LSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA-MILPKGLFSKKLERYKIFIGDEWDWSGNYK 303 (1124)
Q Consensus 225 L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~ 303 (1124)
+++|++|++++|.+. ......+..+++|+.|++++|.. ..++...
T Consensus 175 l~~L~~L~l~~n~i~-----------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----------------------- 220 (477)
T 2id5_A 175 LHGLIVLRLRHLNIN-----------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNC----------------------- 220 (477)
T ss_dssp CTTCCEEEEESCCCC-----------EECTTCSCSCTTCCEEEEECCTTCCEECTTT-----------------------
T ss_pred cCCCcEEeCCCCcCc-----------EeChhhcccCcccceeeCCCCccccccCccc-----------------------
Confidence 999999999999887 33445688899999999998764 2333322
Q ss_pred CceEEEEeccccchhHHHHhhcccceeeccccCCccccccccccccccccceeeeccCCCeeEEeeCCcccccccccccc
Q 001201 304 NKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLE 383 (1124)
Q Consensus 304 ~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~ 383 (1124)
....+|+.|+++++.. .. ++...+..+++|+.|++++|. +..++. ..+..+++|+
T Consensus 221 ------------------~~~~~L~~L~l~~n~l-~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~----~~~~~l~~L~ 275 (477)
T 2id5_A 221 ------------------LYGLNLTSLSITHCNL-TA-VPYLAVRHLVYLRFLNLSYNP-ISTIEG----SMLHELLRLQ 275 (477)
T ss_dssp ------------------TTTCCCSEEEEESSCC-CS-CCHHHHTTCTTCCEEECCSSC-CCEECT----TSCTTCTTCC
T ss_pred ------------------ccCccccEEECcCCcc-cc-cCHHHhcCccccCeeECCCCc-CCccCh----hhccccccCC
Confidence 0012455555554322 11 121123566777777777775 222211 1123344555
Q ss_pred eeecccccccccccccccCccccCCccEEEEccCCCcCcccchhhhhccCcccEEeccc
Q 001201 384 SLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVIN 442 (1124)
Q Consensus 384 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~L~~ 442 (1124)
.|+++++ .+..+. ......+++|+.|+++++ +++.++. ..+..+++|++|++++
T Consensus 276 ~L~L~~n-~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 276 EIQLVGG-QLAVVE--PYAFRGLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDS 329 (477)
T ss_dssp EEECCSS-CCSEEC--TTTBTTCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCS
T ss_pred EEECCCC-ccceEC--HHHhcCcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccC
Confidence 5555542 222221 111224555666666653 4555443 3345555666666555
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.8e-22 Score=242.73 Aligned_cols=282 Identities=15% Similarity=0.183 Sum_probs=148.2
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC-cccCCCCCCcEEEccCCCCCCc--ccccCcccCcE
Q 001201 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEI 182 (1124)
Q Consensus 106 ~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~ 182 (1124)
.+++++.|++++|.+. .+|..+|.++++|++|+|++|.+..+| .+|+.+++|++|+|++|.+..+ ..++++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4556666666666554 566666666666666666666666553 3566666666666666666655 34566666666
Q ss_pred EEccCCCCCccchh-hhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCC
Q 001201 183 LSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLS 261 (1124)
Q Consensus 183 L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~ 261 (1124)
|+|++|.+..+|.. |+++++|++|++++|. +..++...++++++|++|++++|.+. .. .++.++
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~---~~~~l~ 192 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT-----------HV---DLSLIP 192 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCS-----------BC---CGGGCT
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCC-----------Cc---Chhhhh
Confidence 66666666666654 3666666666666665 55555544666666666666666654 11 244456
Q ss_pred CCCEEEeecCCCcccCccccccccceEEEEeCCcccccCCCCCceEEEEeccccchhHHHHhhcccceeeccccCCcccc
Q 001201 262 HLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNV 341 (1124)
Q Consensus 262 ~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~ 341 (1124)
+|+.|++++|.+..++. ..+|+.+++..+.+.. ++. ...++|+.|+++++....
T Consensus 193 ~L~~L~l~~n~l~~l~~---~~~L~~L~ls~n~l~~-------------------~~~--~~~~~L~~L~L~~n~l~~-- 246 (597)
T 3oja_B 193 SLFHANVSYNLLSTLAI---PIAVEELDASHNSINV-------------------VRG--PVNVELTILKLQHNNLTD-- 246 (597)
T ss_dssp TCSEEECCSSCCSEEEC---CTTCSEEECCSSCCCE-------------------EEC--SCCSCCCEEECCSSCCCC--
T ss_pred hhhhhhcccCccccccC---CchhheeeccCCcccc-------------------ccc--ccCCCCCEEECCCCCCCC--
Confidence 66666666665433221 1223333332221100 000 001345555555443211
Q ss_pred ccccccccccccceeeeccCCCeeEEeeCCcccccccccccceeecccccccccccccccCccccCCccEEEEccCCCcC
Q 001201 342 LYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLK 421 (1124)
Q Consensus 342 ~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~ 421 (1124)
.+. +..+++|+.|++++|......+ ..+..+++|+.|+++++ .+..+ +.....+++|+.|++++| .+.
T Consensus 247 ~~~--l~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~l---~~~~~~l~~L~~L~Ls~N-~l~ 314 (597)
T 3oja_B 247 TAW--LLNYPGLVEVDLSYNELEKIMY-----HPFVKMQRLERLYISNN-RLVAL---NLYGQPIPTLKVLDLSHN-HLL 314 (597)
T ss_dssp CGG--GGGCTTCSEEECCSSCCCEEES-----GGGTTCSSCCEEECTTS-CCCEE---ECSSSCCTTCCEEECCSS-CCC
T ss_pred Chh--hccCCCCCEEECCCCccCCCCH-----HHhcCccCCCEEECCCC-CCCCC---CcccccCCCCcEEECCCC-CCC
Confidence 122 2456666666666665221111 12334555666666552 33332 111234566666666663 344
Q ss_pred cccchhhhhccCcccEEecccc
Q 001201 422 NIFSFSFVRGLPQLQTLNVINC 443 (1124)
Q Consensus 422 ~l~~~~~~~~l~~L~~L~L~~c 443 (1124)
.+|. .+..+++|++|++++|
T Consensus 315 ~i~~--~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 315 HVER--NQPQFDRLENLYLDHN 334 (597)
T ss_dssp CCGG--GHHHHTTCSEEECCSS
T ss_pred ccCc--ccccCCCCCEEECCCC
Confidence 4443 2455566666666653
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=7.1e-22 Score=240.28 Aligned_cols=235 Identities=15% Similarity=0.165 Sum_probs=168.1
Q ss_pred CCCCCcEEEeecCCCccCCcc-cCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCccch-hhhCCCCccEE
Q 001201 131 GMSNLRGLALSNMQFLSLPSL-FHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLF 206 (1124)
Q Consensus 131 ~l~~Lr~L~Ls~~~i~~lp~~-i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L 206 (1124)
.+.++++|++++|.+..+|.. +..+++|++|+|++|.+..+ ..|+.+++|++|+|++|.+..+|. .|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467899999999999999765 68899999999999999877 589999999999999999998875 57999999999
Q ss_pred EecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccc
Q 001201 207 DLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLE 286 (1124)
Q Consensus 207 ~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~ 286 (1124)
++++|. +..+|...++++++|++|++++|.+. ...+..++.+++|+.|++++|.+..++..
T Consensus 129 ~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------- 189 (597)
T 3oja_B 129 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLE-----------RIEDDTFQATTSLQNLQLSSNRLTHVDLS------- 189 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-----------BCCTTTTTTCTTCCEEECTTSCCSBCCGG-------
T ss_pred EeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCC-----------CCChhhhhcCCcCcEEECcCCCCCCcChh-------
Confidence 999998 99999987799999999999999887 34456789999999999999987654321
Q ss_pred eEEEEeCCcccccCCCCCceEEEEeccccchhHHHHhhcccceeeccccCCccccccccccccccccceeeeccCCCeeE
Q 001201 287 RYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILF 366 (1124)
Q Consensus 287 ~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~ 366 (1124)
.+++|+.|+++++.. ..+ ...++|+.|++++|. +..
T Consensus 190 ------------------------------------~l~~L~~L~l~~n~l-----~~l--~~~~~L~~L~ls~n~-l~~ 225 (597)
T 3oja_B 190 ------------------------------------LIPSLFHANVSYNLL-----STL--AIPIAVEELDASHNS-INV 225 (597)
T ss_dssp ------------------------------------GCTTCSEEECCSSCC-----SEE--ECCTTCSEEECCSSC-CCE
T ss_pred ------------------------------------hhhhhhhhhcccCcc-----ccc--cCCchhheeeccCCc-ccc
Confidence 134555555554311 111 334567777777765 222
Q ss_pred EeeCCcccccccccccceeecccccccccccccccCccccCCccEEEEccCCCcCcccchhhhhccCcccEEeccc
Q 001201 367 IVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVIN 442 (1124)
Q Consensus 367 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~L~~ 442 (1124)
++ ...+++|+.|+++++ .+... .....+++|+.|++++| .+..+++ ..+..+++|++|++++
T Consensus 226 ~~-------~~~~~~L~~L~L~~n-~l~~~----~~l~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 226 VR-------GPVNVELTILKLQHN-NLTDT----AWLLNYPGLVEVDLSYN-ELEKIMY-HPFVKMQRLERLYISN 287 (597)
T ss_dssp EE-------CSCCSCCCEEECCSS-CCCCC----GGGGGCTTCSEEECCSS-CCCEEES-GGGTTCSSCCEEECTT
T ss_pred cc-------cccCCCCCEEECCCC-CCCCC----hhhccCCCCCEEECCCC-ccCCCCH-HHhcCccCCCEEECCC
Confidence 21 112345666666553 22211 12335566666666663 3444433 2355566666666665
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=1.6e-20 Score=210.78 Aligned_cols=121 Identities=21% Similarity=0.325 Sum_probs=57.2
Q ss_pred cCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccCC
Q 001201 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRC 166 (1124)
Q Consensus 88 lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~ 166 (1124)
++.++++++.+..+|..+ .++|++|++++|.+. .++...|.++++|++|++++|.+..+ |.+|+.+++|++|+|++|
T Consensus 35 l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred CCEEECCCCCccccCCCC-CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 455555555555554433 244555555555443 33333444555555555555555444 344555555555555555
Q ss_pred CCCCc-ccccCcccCcEEEccCCCCCccch-hhhCCCCccEEEecCCC
Q 001201 167 ALGDI-AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCS 212 (1124)
Q Consensus 167 ~l~~l-~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~ 212 (1124)
.+..+ ..+. .+|++|++++|.+..+|. .++.+++|++|++++|.
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence 44443 2222 445555555554444443 24445555555555444
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.4e-20 Score=210.17 Aligned_cols=174 Identities=18% Similarity=0.305 Sum_probs=149.3
Q ss_pred CCCcCEEEeecCCCccCCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEc
Q 001201 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (1124)
Q Consensus 85 ~~~lr~L~l~~n~i~~l~~~~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L 163 (1124)
..+++.|++++|.+..+|..+ .+++|++|++++|.+. .+|.. |.++++|++|++++|.+..+|..++.+++|++|+|
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 468999999999999999877 7899999999999888 78854 58899999999999999999999999999999999
Q ss_pred cCCC-CCCc-ccc---------cCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEE
Q 001201 164 DRCA-LGDI-AII---------GNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLY 232 (1124)
Q Consensus 164 ~~~~-l~~l-~~i---------~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~ 232 (1124)
++|. +..+ ..+ +++++|++|++++|.++.+|..++++++|++|++++|. +..+|.. ++.+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEEE
Confidence 9976 3444 343 45999999999999999999999999999999999998 8888877 88999999999
Q ss_pred eecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCC
Q 001201 233 MGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1124)
Q Consensus 233 l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (1124)
+++|.+. ...+..++.+++|+.|++++|..
T Consensus 236 Ls~n~~~-----------~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 236 LRGCTAL-----------RNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp CTTCTTC-----------CBCCCCTTCCCCCCEEECTTCTT
T ss_pred CcCCcch-----------hhhHHHhcCCCCCCEEECCCCCc
Confidence 9998776 34566788888999999988764
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=1.9e-19 Score=201.93 Aligned_cols=148 Identities=21% Similarity=0.348 Sum_probs=83.9
Q ss_pred CcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccC
Q 001201 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDR 165 (1124)
Q Consensus 87 ~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~ 165 (1124)
+++.++++++.+..+|.... +.+++|++++|.+. .++...|.++++|++|++++|.+..+ |..++.+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 45566666666665554432 45666666666555 35544556666666666666666655 55566666666666666
Q ss_pred CCCCCc-ccccCcccCcEEEccCCCCCccch-hhhCCCCccEEEecCCCCCCc--cCccccCCCCCccEEEeecccCc
Q 001201 166 CALGDI-AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 166 ~~l~~l-~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~i~ 239 (1124)
|.+..+ ..+. ++|++|++++|.+..++. .++++.+|++|++++|. +.. +....+.++++|++|++++|.+.
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccc
Confidence 665544 2222 556666666666665543 35666666666666665 432 22223556666666666666554
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=1.7e-19 Score=202.47 Aligned_cols=170 Identities=19% Similarity=0.312 Sum_probs=78.2
Q ss_pred CCcCEEEeecCCCccCCCC-C-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEc
Q 001201 86 KNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (1124)
Q Consensus 86 ~~lr~L~l~~n~i~~l~~~-~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L 163 (1124)
..+++|++++|.+..++.. + ++++|++|++++|.+. .+++..|.++++|++|++++|.+..+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEEC
Confidence 4445555555555444432 1 4455555555555444 2322334455555555555555554444332 44555555
Q ss_pred cCCCCCCc--ccccCcccCcEEEccCCCCCc---cchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccC
Q 001201 164 DRCALGDI--AIIGNLKKLEILSLVDSNIEQ---LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 238 (1124)
Q Consensus 164 ~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~---lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i 238 (1124)
++|.+..+ ..+.++++|++|++++|.+.. .|..++.+++|++|++++|. +..+|.. + .++|++|++++|.+
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~-~--~~~L~~L~l~~n~l 204 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG-L--PPSLTELHLDGNKI 204 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSS-C--CTTCSEEECTTSCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcc-c--cccCCEEECCCCcC
Confidence 55554443 234445555555555554431 23344455555555555554 4444443 1 14455555555444
Q ss_pred ccccccccccCCCcChhhhcCCCCCCEEEeecCCC
Q 001201 239 KWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1124)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (1124)
. ...+..+..+++|+.|++++|.+
T Consensus 205 ~-----------~~~~~~~~~l~~L~~L~Ls~n~l 228 (330)
T 1xku_A 205 T-----------KVDAASLKGLNNLAKLGLSFNSI 228 (330)
T ss_dssp C-----------EECTGGGTTCTTCCEEECCSSCC
T ss_pred C-----------ccCHHHhcCCCCCCEEECCCCcC
Confidence 3 12233444444555555544443
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.2e-19 Score=202.63 Aligned_cols=131 Identities=23% Similarity=0.385 Sum_probs=84.7
Q ss_pred CCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCc-ccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecC
Q 001201 132 MSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSG 210 (1124)
Q Consensus 132 l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 210 (1124)
..++++|+|++|.+..+|..++.+++|++|+|++|.+..+ ..++++.+|++|++++|.+..+|..++++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 4566666666666666666666666666666666666655 556666777777777776777777777777777777777
Q ss_pred CCCCCccCccccC---------CCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcc
Q 001201 211 CSKLKVIPPNLLS---------GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMI 275 (1124)
Q Consensus 211 ~~~l~~lp~~~i~---------~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 275 (1124)
|..+..+|.. ++ ++++|++|++++|.+. ..+..++++++|+.|++++|.+..
T Consensus 160 n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~------------~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 160 CPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR------------SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp ETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC------------CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC------------cchHhhcCCCCCCEEEccCCCCCc
Confidence 6656666654 33 3666666666666554 233456666666666666665543
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.3e-19 Score=203.31 Aligned_cols=283 Identities=17% Similarity=0.195 Sum_probs=200.8
Q ss_pred ecCCcccCCCcccCCCCcCEEEeecCCCccCCCC-C-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC
Q 001201 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (1124)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~-~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l 148 (1124)
+.+......|. ...+++++|++++|.+..++.. + ++++|++|++++|.+. .++...|.++++|++|++++|.+..+
T Consensus 40 ~~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l 117 (332)
T 2ft3_A 40 CSDLGLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEI 117 (332)
T ss_dssp CCSSCCSSCCS-CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSC
T ss_pred CCCCCccccCC-CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCCcc
Confidence 33444444443 4467899999999999988653 3 8999999999999887 56667789999999999999999999
Q ss_pred CcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCc---cchhhhCCCCccEEEecCCCCCCccCccccC
Q 001201 149 PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQ---LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLS 223 (1124)
Q Consensus 149 p~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~---lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~ 223 (1124)
|..+. ++|++|++++|.+..+ ..+.++++|++|++++|.++. .|..+..+ +|++|++++|. +..+|.. +.
T Consensus 118 ~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~-~~ 192 (332)
T 2ft3_A 118 PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKD-LP 192 (332)
T ss_dssp CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSS-SC
T ss_pred Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcc-cc
Confidence 98766 8999999999999977 468999999999999999873 46677888 99999999998 8899976 33
Q ss_pred CCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEEeCCcccccCCCC
Q 001201 224 GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYK 303 (1124)
Q Consensus 224 ~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~ 303 (1124)
++|++|++++|.+. ...+..+..+++|+.|++++|.+..++...
T Consensus 193 --~~L~~L~l~~n~i~-----------~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~----------------------- 236 (332)
T 2ft3_A 193 --ETLNELHLDHNKIQ-----------AIELEDLLRYSKLYRLGLGHNQIRMIENGS----------------------- 236 (332)
T ss_dssp --SSCSCCBCCSSCCC-----------CCCTTSSTTCTTCSCCBCCSSCCCCCCTTG-----------------------
T ss_pred --CCCCEEECCCCcCC-----------ccCHHHhcCCCCCCEEECCCCcCCcCChhH-----------------------
Confidence 79999999999887 334567888999999999999876554421
Q ss_pred CceEEEEeccccchhHHHHhhcccceeeccccCCccccccccccccccccceeeeccCCCeeEEeeCCcccccccccccc
Q 001201 304 NKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLE 383 (1124)
Q Consensus 304 ~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~ 383 (1124)
+..+++|+.|+++++.. ..+...+ ..+++|++|++++|. ++.++.. .|.
T Consensus 237 -----------------~~~l~~L~~L~L~~N~l-~~lp~~l--~~l~~L~~L~l~~N~-l~~~~~~-------~~~--- 285 (332)
T 2ft3_A 237 -----------------LSFLPTLRELHLDNNKL-SRVPAGL--PDLKLLQVVYLHTNN-ITKVGVN-------DFC--- 285 (332)
T ss_dssp -----------------GGGCTTCCEEECCSSCC-CBCCTTG--GGCTTCCEEECCSSC-CCBCCTT-------SSS---
T ss_pred -----------------hhCCCCCCEEECCCCcC-eecChhh--hcCccCCEEECCCCC-CCccChh-------Hcc---
Confidence 12245566666665432 2222222 567777777777765 2221100 000
Q ss_pred eeecccccccccccccccCccccCCccEEEEccCCCcC-cccchhhhhccCcccEEecccc
Q 001201 384 SLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLK-NIFSFSFVRGLPQLQTLNVINC 443 (1124)
Q Consensus 384 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~-~l~~~~~~~~l~~L~~L~L~~c 443 (1124)
.......++.|+.|++.+++-.. .+++ ..+..+++|+.++++++
T Consensus 286 ---------------~~~~~~~~~~l~~L~l~~N~~~~~~~~~-~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 286 ---------------PVGFGVKRAYYNGISLFNNPVPYWEVQP-ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp ---------------CSSCCSSSCCBSEEECCSSSSCGGGSCG-GGGTTBCCSTTEEC---
T ss_pred ---------------ccccccccccccceEeecCcccccccCc-ccccccchhhhhhcccc
Confidence 00001124567777777754221 2222 44667777888877765
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=204.98 Aligned_cols=257 Identities=18% Similarity=0.235 Sum_probs=124.4
Q ss_pred EEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccCCCCC
Q 001201 91 IFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALG 169 (1124)
Q Consensus 91 L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~ 169 (1124)
.+.+++.+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+..+ |.+|+.+++|++|+|++|.+.
T Consensus 36 c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT-EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EECCSTTCSSCCTTCC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eeCCCCCccccccccc-ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 4445555555554332 35555555555544 34444455555555555555555544 334555555555555555555
Q ss_pred Cc--ccccCcccCcEEEccCCCCCccch--hhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccc
Q 001201 170 DI--AIIGNLKKLEILSLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (1124)
Q Consensus 170 ~l--~~i~~L~~L~~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~ 245 (1124)
.+ ..++++++|++|++++|.+..+|. .++++++|++|++++|..+..++...++++++|++|++++|.+.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~------ 187 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ------ 187 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC------
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC------
Confidence 44 225555555555555555555554 45555555555555553344444433555555555555555544
Q ss_pred cccCCCcChhhhcCCCCCCEEEeecCCCcccCccc--cccccceEEEEeCCcccc-------cCCCCCceEEEEeccc--
Q 001201 246 NVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIGDEWDW-------SGNYKNKRVLKLKLYT-- 314 (1124)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~l~l~~~~~~~~-------~~~~~~l~~l~l~~~~-- 314 (1124)
...+..++.+++|++|++++|.+..++... ...+|+.+++..+.+-.. ......++.+.+....
T Consensus 188 -----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~ 262 (353)
T 2z80_A 188 -----SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262 (353)
T ss_dssp -----EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred -----ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence 222344455555555555555554444333 234455555543332110 0112223334443322
Q ss_pred ----cchhHHHHhhcccceeeccccCCccccccccccccccccceeeeccCC
Q 001201 315 ----SNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (1124)
Q Consensus 315 ----~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 362 (1124)
..++..+..+++|+.|+++++.- +.. +...+..+++|++|++++|+
T Consensus 263 ~~~l~~l~~~l~~l~~L~~L~Ls~N~l-~~i-~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 263 DESLFQVMKLLNQISGLLELEFSRNQL-KSV-PDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCSSCC-CCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CcchhhhHHHHhcccCCCEEECCCCCC-Ccc-CHHHHhcCCCCCEEEeeCCC
Confidence 12333445566666666665432 222 22112455666666666664
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=3.2e-20 Score=205.98 Aligned_cols=242 Identities=16% Similarity=0.168 Sum_probs=176.4
Q ss_pred CCcCEEEeecCCCc---cCCCCC-CCCCccEEEecC-CCCCCCCChhhhcCCCCCcEEEeecCCCc-cCCcccCCCCCCc
Q 001201 86 KNCPTIFLHDCKHW---EVPEGL-EYPQLEFFCMSP-RDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPSLFHLPLNLQ 159 (1124)
Q Consensus 86 ~~lr~L~l~~n~i~---~l~~~~-~~~~L~~L~L~~-n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~-~lp~~i~~l~~Lr 159 (1124)
.++++|++++|.+. .+|..+ .+++|++|++++ |.+...+|.. |.++++|++|++++|.+. .+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 57889999999887 467666 788999999985 7777667654 588899999999999887 6788888999999
Q ss_pred EEEccCCCCC-Cc-ccccCcccCcEEEccCCCCC-ccchhhhCCC-CccEEEecCCCCCC-ccCccccCCCCCccEEEee
Q 001201 160 TLCLDRCALG-DI-AIIGNLKKLEILSLVDSNIE-QLPEEMAQLT-QLRLFDLSGCSKLK-VIPPNLLSGLSRLEDLYMG 234 (1124)
Q Consensus 160 ~L~L~~~~l~-~l-~~i~~L~~L~~L~Ls~~~i~-~lp~~i~~L~-~L~~L~L~~~~~l~-~lp~~~i~~L~~L~~L~l~ 234 (1124)
+|+|++|.+. .+ ..++.+++|++|++++|.+. .+|..++.+. +|++|++++|. +. .+|.. ++.+. |++|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~-~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPT-FANLN-LAFVDLS 205 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGG-GGGCC-CSEEECC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChH-HhCCc-ccEEECc
Confidence 9999998877 34 77888999999999999888 7888888888 89999999887 55 56655 77776 9999998
Q ss_pred cccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEEeCCcccccCCCCCceEEEEeccc
Q 001201 235 NTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYT 314 (1124)
Q Consensus 235 ~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~ 314 (1124)
+|.+. ...+..+..+++|+.|++++|.+...++.+
T Consensus 206 ~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---------------------------------- 240 (313)
T 1ogq_A 206 RNMLE-----------GDASVLFGSDKNTQKIHLAKNSLAFDLGKV---------------------------------- 240 (313)
T ss_dssp SSEEE-----------ECCGGGCCTTSCCSEEECCSSEECCBGGGC----------------------------------
T ss_pred CCccc-----------CcCCHHHhcCCCCCEEECCCCceeeecCcc----------------------------------
Confidence 88876 345667788888999998888754322211
Q ss_pred cchhHHHHhhcccceeeccccCCccccccccccccccccceeeeccCCCeeEEeeCCcccccccccccceeeccccc
Q 001201 315 SNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLI 391 (1124)
Q Consensus 315 ~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~ 391 (1124)
..+++|+.|+++++......+..+ ..+++|++|++++|.....++ ....+++|+.+++.+.+
T Consensus 241 -------~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~ip------~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 241 -------GLSKNLNGLDLRNNRIYGTLPQGL--TQLKFLHSLNVSFNNLCGEIP------QGGNLQRFDVSAYANNK 302 (313)
T ss_dssp -------CCCTTCCEEECCSSCCEECCCGGG--GGCTTCCEEECCSSEEEEECC------CSTTGGGSCGGGTCSSS
T ss_pred -------cccCCCCEEECcCCcccCcCChHH--hcCcCCCEEECcCCcccccCC------CCccccccChHHhcCCC
Confidence 123466666666654332322233 567778888888776332322 22456666666666644
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=4.9e-21 Score=234.14 Aligned_cols=169 Identities=12% Similarity=0.089 Sum_probs=82.2
Q ss_pred ccCCccEEEEcc----------CCCcCcccchhhhhccCcccEEecccccccchhccccccCCcccCcccc-cccCccCE
Q 001201 405 SFYKLKIIKVRN----------CDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDK-IEFSQLHS 473 (1124)
Q Consensus 405 ~~~~L~~L~l~~----------C~~L~~l~~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~-~~~~~L~~ 473 (1124)
.+++|++|++.+ |+.++..........+++|++|++ .|+.+...... .. ..+++|+.
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~-----------~l~~~~~~L~~ 407 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLE-----------SIGTYLKNLCD 407 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHH-----------HHHHHCCSCCE
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHH-----------HHHhhCCCCcE
Confidence 456677777774 666655433233455677777777 44444322100 11 13666777
Q ss_pred EeecC---CCcccccccc--cccchhcccccceecccCCCceeecccccCcccccccccccccccceeeecccccccccc
Q 001201 474 LTLKF---LPQLTSFYSQ--VKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWC 548 (1124)
Q Consensus 474 L~l~~---~~~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 548 (1124)
|++.+ |+.+++.+.. ....+..+++|+.|+++.|...... .....-...+++|++|++++|.++....
T Consensus 408 L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~-------~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD-------LGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp EEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH-------HHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred EEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH-------HHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 77763 4445443210 1112344566666666554321000 0000000125566777776666443211
Q ss_pred cCcccccCCCccEEEEecCCCccccCcchhhhhccCCCEEEEeccc
Q 001201 549 NQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCS 594 (1124)
Q Consensus 549 ~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~ 594 (1124)
..+. ..+++|+.|+|++|+ ++......++..+++|++|++++|.
T Consensus 481 ~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 481 MEFS-RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHH-TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHH-hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 1110 125667777777765 4433223344566677777777776
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=2.6e-19 Score=196.32 Aligned_cols=194 Identities=26% Similarity=0.398 Sum_probs=148.9
Q ss_pred ecCCcccCCCcccCCCCcCEEEeecCCCccCCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCC-Ccc
Q 001201 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ-FLS 147 (1124)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~--~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~-i~~ 147 (1124)
+.+.+....| .....++++|++++|.+..++... .+++|++|++++|.+. .++...|.++++|++|++++|. +..
T Consensus 18 c~~~~l~~ip-~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~ 95 (285)
T 1ozn_A 18 CPQQGLQAVP-VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRS 95 (285)
T ss_dssp CCSSCCSSCC-TTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred cCcCCcccCC-cCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccc
Confidence 3344444444 245678888888888888777543 7888888888888776 4555667888888888888886 777
Q ss_pred C-CcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCccch-hhhCCCCccEEEecCCCCCCccCccccC
Q 001201 148 L-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLS 223 (1124)
Q Consensus 148 l-p~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~ 223 (1124)
+ |..+..+++|++|++++|.+..+ ..+.++++|++|++++|.+..+|. .++.+++|++|++++|. +..+|...+.
T Consensus 96 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 174 (285)
T 1ozn_A 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFR 174 (285)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTT
T ss_pred cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhc
Confidence 7 66788888888888888887766 567888888888888888888765 47888888888888887 7788776678
Q ss_pred CCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCc
Q 001201 224 GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (1124)
Q Consensus 224 ~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 278 (1124)
.+++|++|++++|.+. ...+..+..+++|+.|++++|.+..++.
T Consensus 175 ~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVA-----------HVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp TCTTCCEEECCSSCCC-----------EECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred CccccCEEECCCCccc-----------ccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 8888888888888776 3345667788888888888887766554
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=208.17 Aligned_cols=173 Identities=24% Similarity=0.312 Sum_probs=99.0
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC-cccCCCCCCcEEEccCCC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCA 167 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~ 167 (1124)
+.++..++.+..+|..+. ++++.|+|++|.+. .++...|.++++|++|+|++|.+..++ ..|..+++|++|+|++|.
T Consensus 46 ~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS-TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp CEEECCSCCCSSCCSCCC-TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 455555555555555442 45666666666554 344445566666666666666665553 455666666666666666
Q ss_pred CCCc--ccccCcccCcEEEccCCCCCccch-hhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccccc
Q 001201 168 LGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (1124)
Q Consensus 168 l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~ 244 (1124)
++.+ ..+..+.+|++|++++|.+..+|. .|.++.+|++|++++|..+..++...+.++++|++|++++|.+.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~----- 198 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR----- 198 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-----
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-----
Confidence 5555 345666666666666666665543 45666666666666655455555555566666666666666554
Q ss_pred ccccCCCcChhhhcCCCCCCEEEeecCCCccc
Q 001201 245 LNVGRSNASLQELKLLSHLTTLEIQICDAMIL 276 (1124)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 276 (1124)
.+..+..+++|+.|++++|.+..+
T Consensus 199 --------~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 199 --------EIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp --------SCCCCTTCSSCCEEECTTSCCCEE
T ss_pred --------cccccCCCcccCEEECCCCccCcc
Confidence 122355555666666666655444
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=4.7e-19 Score=207.96 Aligned_cols=175 Identities=23% Similarity=0.278 Sum_probs=116.0
Q ss_pred cCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC-cccCCCCCCcEEEccCC
Q 001201 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRC 166 (1124)
Q Consensus 88 lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~ 166 (1124)
.+.++..++.+..+|..+. +++++|+|++|.+. .++...|.++++|++|+|++|.+..++ ..|..+++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC-CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 3456666666666665543 56777777777665 455555677777777777777776653 56777777777777777
Q ss_pred CCCCc--ccccCcccCcEEEccCCCCCccch-hhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccc
Q 001201 167 ALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (1124)
Q Consensus 167 ~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~ 243 (1124)
.+..+ ..+..+++|++|++++|.+..+|. .|.++.+|++|++++|..+..++.+.+.++.+|++|++++|.+.
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---- 209 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---- 209 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS----
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc----
Confidence 76655 446667777777777777776654 56777777777777766567776666677777777777777655
Q ss_pred cccccCCCcChhhhcCCCCCCEEEeecCCCcccC
Q 001201 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILP 277 (1124)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 277 (1124)
.+..+..+++|+.|++++|.+..++
T Consensus 210 ---------~~~~~~~l~~L~~L~Ls~N~l~~~~ 234 (452)
T 3zyi_A 210 ---------DMPNLTPLVGLEELEMSGNHFPEIR 234 (452)
T ss_dssp ---------SCCCCTTCTTCCEEECTTSCCSEEC
T ss_pred ---------ccccccccccccEEECcCCcCcccC
Confidence 1234566667777777777665443
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=2e-19 Score=199.43 Aligned_cols=177 Identities=19% Similarity=0.245 Sum_probs=91.6
Q ss_pred CCCcCEEEeecCCCccCCCCC--CCCCccEEEecCCCCCC--CCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcE
Q 001201 85 LKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSI--KIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQT 160 (1124)
Q Consensus 85 ~~~lr~L~l~~n~i~~l~~~~--~~~~L~~L~L~~n~~~~--~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~ 160 (1124)
..++++|++++|.+..++... ++++|++|++++|.+.. ..+.. +.++++|++|++++|.+..+|..+..+++|++
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 105 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccChhhcCCCCCCCE
Confidence 445555555555555555432 55555555555555431 01222 23455555555555555555555555555555
Q ss_pred EEccCCCCCCc---ccccCcccCcEEEccCCCCCcc-chhhhCCCCccEEEecCCCCCCc--cCccccCCCCCccEEEee
Q 001201 161 LCLDRCALGDI---AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMG 234 (1124)
Q Consensus 161 L~L~~~~l~~l---~~i~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~--lp~~~i~~L~~L~~L~l~ 234 (1124)
|++++|.+..+ ..+..+++|++|++++|.+... |..++.+++|++|++++|. +.. +|.. +..+++|++|+++
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~l~~L~~L~Ls 183 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI-FTELRNLTFLDLS 183 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECSC-CTTCTTCCEEECT
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccchhH-HhhCcCCCEEECC
Confidence 55555554433 2455555555555555555533 3345555555555555554 332 3333 5555555555555
Q ss_pred cccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcc
Q 001201 235 NTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMI 275 (1124)
Q Consensus 235 ~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 275 (1124)
+|.+. ...+..+..+++|+.|++++|.+..
T Consensus 184 ~n~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 184 QCQLE-----------QLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp TSCCC-----------EECTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCcC-----------CcCHHHhcCCCCCCEEECCCCccCc
Confidence 55544 2223344555555555555555433
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=1.3e-18 Score=190.73 Aligned_cols=174 Identities=20% Similarity=0.251 Sum_probs=154.0
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccCCC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 167 (1124)
+.++.+++.+..+|... .++|++|++++|.+. .++...|.++++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 68889999999998755 579999999999987 67777889999999999999999987 7789999999999999997
Q ss_pred -CCCc--ccccCcccCcEEEccCCCCCcc-chhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccc
Q 001201 168 -LGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (1124)
Q Consensus 168 -l~~l--~~i~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~ 243 (1124)
+..+ ..+..+++|++|++++|.+..+ |..++++++|++|++++|. +..++...++.+++|++|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~---- 166 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS---- 166 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC----
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccc----
Confidence 8876 6799999999999999999988 5678999999999999998 88888877899999999999999876
Q ss_pred cccccCCCcChhhhcCCCCCCEEEeecCCCccc
Q 001201 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMIL 276 (1124)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 276 (1124)
......+..+++|+.|++++|.+..+
T Consensus 167 -------~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 167 -------SVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp -------EECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred -------ccCHHHhcCccccCEEECCCCccccc
Confidence 22334588899999999999987655
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=196.81 Aligned_cols=155 Identities=24% Similarity=0.313 Sum_probs=134.3
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCc-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcE
Q 001201 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEI 182 (1124)
Q Consensus 106 ~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~ 182 (1124)
.|+.....+++++.+. .+|..++ ++|++|++++|.+..+|. .+..+++|++|++++|.+..+ ..++++++|++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 5666677888888877 7887654 589999999999999876 799999999999999999877 56999999999
Q ss_pred EEccCCCCCccchh-hhCCCCccEEEecCCCCCCccCc-cccCCCCCccEEEeeccc-CccccccccccCCCcChhhhcC
Q 001201 183 LSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTS-VKWEFEGLNVGRSNASLQELKL 259 (1124)
Q Consensus 183 L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~-i~~~~~~~~~~~~~~~~~~l~~ 259 (1124)
|++++|.++.+|.. ++++++|++|++++|. +..+|. ..++++++|++|++++|. +. ......+++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~-----------~~~~~~~~~ 172 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT-----------KIQRKDFAG 172 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC-----------EECTTTTTT
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccc-----------ccCHHHccC
Confidence 99999999999876 8999999999999998 889987 558999999999999984 43 233457888
Q ss_pred CCCCCEEEeecCCCccc
Q 001201 260 LSHLTTLEIQICDAMIL 276 (1124)
Q Consensus 260 l~~L~~L~l~~~~~~~l 276 (1124)
+++|+.|++++|.+...
T Consensus 173 l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 173 LTFLEELEIDASDLQSY 189 (353)
T ss_dssp CCEEEEEEEEETTCCEE
T ss_pred CCCCCEEECCCCCcCcc
Confidence 99999999999987655
No 56
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=2.2e-20 Score=228.53 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=33.5
Q ss_pred ccccceeeecccccccccccCcccccCCCccEEEEecCCCccccCcchhhhhccCCCEEEEeccc
Q 001201 530 FPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCS 594 (1124)
Q Consensus 530 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~ 594 (1124)
+++|++|++++|.++......+. ..+++|+.|++++|+. +......++..+++|+.|++++|+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~-~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVL-SGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHH-HHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSC
T ss_pred chhccEeeccCCCCcHHHHHHHH-hcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCC
Confidence 45666666666664332211110 1256677777777654 332222344556677777777776
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=1.8e-19 Score=220.21 Aligned_cols=335 Identities=13% Similarity=0.045 Sum_probs=187.9
Q ss_pred cccccceeeecccccccccccCcc--cccCCCccEEEEecCCCccccCcchhhhhccCCCEEEEeccccccceecccccc
Q 001201 529 VFPNLETLELCAISTEKIWCNQLA--AVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGE 606 (1124)
Q Consensus 529 ~~~~L~~L~l~~~~l~~~~~~~~~--~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~l~~i~~~~~~~ 606 (1124)
.+++|++|++++|.+..+....+. ...+++|+.|++++| .+..+ + ..+..+++|++|+++.+.........
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l-~-~~~~~~~~L~~L~l~~~~~~~~~~~~---- 262 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILEL-V-GFFKAAANLEEFCGGSLNEDIGMPEK---- 262 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGG-H-HHHHHCTTCCEEEECBCCCCTTCTTS----
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHH-H-HHHhhhhHHHhhcccccccccchHHH----
Confidence 356677777766665422111111 013577888888775 34443 3 45667778888888764322111000
Q ss_pred cccceeecCccceeccccCcccceecCCCccCCCCcccEEEEecCCcceeecccccccccccCCccccccccceeeeeee
Q 001201 607 EATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKV 686 (1124)
Q Consensus 607 ~~~~~~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1124)
......+++|+.|.++++. ...++.. ...+++|++|++++|. +...... ..-..
T Consensus 263 -~~~l~~~~~L~~L~l~~~~-~~~l~~~--~~~~~~L~~L~Ls~~~-l~~~~~~---------------------~~~~~ 316 (592)
T 3ogk_B 263 -YMNLVFPRKLCRLGLSYMG-PNEMPIL--FPFAAQIRKLDLLYAL-LETEDHC---------------------TLIQK 316 (592)
T ss_dssp -SSCCCCCTTCCEEEETTCC-TTTGGGG--GGGGGGCCEEEETTCC-CCHHHHH---------------------HHHTT
T ss_pred -HHHhhccccccccCccccc-hhHHHHH--HhhcCCCcEEecCCCc-CCHHHHH---------------------HHHHh
Confidence 0111145677777776642 1122211 1246788888888876 4321100 00034
Q ss_pred cCCceEEeeccccccccccccCCccccccccEEEEee----------CCCcc--cchHHHhhcCCCcEEEEEcceeeEEc
Q 001201 687 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVN----------DESEN--FRIGFLERFHNLEKLELRWSSYKEIF 754 (1124)
Q Consensus 687 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~----------c~~l~--~~~~~l~~l~~L~~L~i~c~~l~~l~ 754 (1124)
+++|+.|+++++-.....+ .....+++|++|++++ |..+. ......+.+++|+.|+++|+.+....
T Consensus 317 ~~~L~~L~L~~~~~~~~l~--~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~ 394 (592)
T 3ogk_B 317 CPNLEVLETRNVIGDRGLE--VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394 (592)
T ss_dssp CTTCCEEEEEGGGHHHHHH--HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred CcCCCEEeccCccCHHHHH--HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence 6788888887332211110 0113467788888885 66552 22334567889999999877765321
Q ss_pred cChhhhhhhh-hccccceEeccC---cccccccccC-C-CCcccccCcccEEEEeccCC-ccc--ccCCccccCCccEEE
Q 001201 755 SNEEIVEHAE-MLTQVKSLKLWE---LSDLMYIWKQ-D-SKLDSITENLESLEVWWCEN-LIN--LVPSSASFKNLTTLE 825 (1124)
Q Consensus 755 ~~~~~~~~~~-~l~~L~~L~l~~---~~~L~~i~~~-~-~~~~~~l~~L~~L~i~~c~~-l~~--l~~~~~~~~~L~~L~ 825 (1124)
.. .+. .+++|++|++++ |+.++..+.. + ......+++|++|++++|.. +.. +......+++|+.|+
T Consensus 395 ~~-----~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 395 LE-----SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469 (592)
T ss_dssp HH-----HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred HH-----HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence 11 222 378899999874 4555543110 0 01134578999999988775 211 111123478899999
Q ss_pred EcCCcCccccchhHHhhccCCccEEEEecccchhhhhccCcccccccccccccceeecccCCCcccccCCCccccCCCcc
Q 001201 826 LWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLE 905 (1124)
Q Consensus 826 i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~ 905 (1124)
+++|. +........+.++++|++|++++|+ +...... +....+++|+.|++++|+ ++..........+|.|.
T Consensus 470 L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-----~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~ 541 (592)
T 3ogk_B 470 LGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIA-----AAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWN 541 (592)
T ss_dssp ECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHH-----HHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEE
T ss_pred ccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHH-----HHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcE
Confidence 99886 6554445667788999999999998 3321100 001147899999999998 55544333334566666
Q ss_pred EEEEcc
Q 001201 906 DLFVIE 911 (1124)
Q Consensus 906 ~L~i~~ 911 (1124)
...|..
T Consensus 542 ~~~~~~ 547 (592)
T 3ogk_B 542 IELIPS 547 (592)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 555543
No 58
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=9.3e-21 Score=223.91 Aligned_cols=158 Identities=19% Similarity=0.194 Sum_probs=107.2
Q ss_pred CCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCc-----cCCcccCCCCCCcEEEccCCCCCCc--ccc-cCcc-
Q 001201 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-----SLPSLFHLPLNLQTLCLDRCALGDI--AII-GNLK- 178 (1124)
Q Consensus 108 ~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~-----~lp~~i~~l~~Lr~L~L~~~~l~~l--~~i-~~L~- 178 (1124)
++|++|++++|.+.......+|..+++|++|++++|.+. .++..+..+++|++|+|++|.+... ..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 467778887777653333445778888888888888877 4567778888888888888887642 222 2344
Q ss_pred ---cCcEEEccCCCCC-----ccchhhhCCCCccEEEecCCCCCCccC-----ccccCCCCCccEEEeecccCccccccc
Q 001201 179 ---KLEILSLVDSNIE-----QLPEEMAQLTQLRLFDLSGCSKLKVIP-----PNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (1124)
Q Consensus 179 ---~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~lp-----~~~i~~L~~L~~L~l~~~~i~~~~~~~ 245 (1124)
+|++|++++|.+. .+|..+.++++|++|++++|. +.... ........+|++|++++|.+...+.
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-- 159 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC-- 159 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH--
Confidence 6888888888877 457778888888888888887 54321 1212335678888888887651110
Q ss_pred cccCCCcChhhhcCCCCCCEEEeecCCC
Q 001201 246 NVGRSNASLQELKLLSHLTTLEIQICDA 273 (1124)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (1124)
......++.+++|++|++++|.+
T Consensus 160 -----~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 160 -----EPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp -----HHHHHHHHHCTTCCEEECCSSBC
T ss_pred -----HHHHHHHhhCCCCCEEECcCCCc
Confidence 12244566677888888877764
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=3e-18 Score=200.37 Aligned_cols=234 Identities=21% Similarity=0.286 Sum_probs=190.6
Q ss_pred ecCCcccCCCcccCCCCcCEEEeecCCCccCCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC
Q 001201 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (1124)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~--~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l 148 (1124)
..+......|. ....++++|++++|.+..++... ++++|++|+|++|.+. .++...|.++++|++|+|++|.+..+
T Consensus 50 c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~ 127 (440)
T 3zyj_A 50 CVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTI 127 (440)
T ss_dssp CCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSC
T ss_pred eCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCee
Confidence 33444555553 56789999999999999887543 8999999999999887 68878899999999999999999999
Q ss_pred Cc-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCC-CCCccch-hhhCCCCccEEEecCCCCCCccCccccC
Q 001201 149 PS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDS-NIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLS 223 (1124)
Q Consensus 149 p~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~-~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~ 223 (1124)
|. .|..+++|++|+|++|.+..+ ..+.++++|++|++++| .+..+|. .|..+.+|++|++++|. +..+|. +.
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~ 204 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LT 204 (440)
T ss_dssp CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CT
T ss_pred CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cC
Confidence 75 699999999999999999977 57999999999999995 6777775 68999999999999998 999986 89
Q ss_pred CCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEEeCCcccccCCCC
Q 001201 224 GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYK 303 (1124)
Q Consensus 224 ~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~ 303 (1124)
.+.+|++|++++|.+. ...+..+..+++|+.|++++|.+..++...
T Consensus 205 ~l~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------------------- 250 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLS-----------AIRPGSFQGLMHLQKLWMIQSQIQVIERNA----------------------- 250 (440)
T ss_dssp TCSSCCEEECTTSCCC-----------EECTTTTTTCTTCCEEECTTCCCCEECTTS-----------------------
T ss_pred CCcccCEEECCCCccC-----------ccChhhhccCccCCEEECCCCceeEEChhh-----------------------
Confidence 9999999999999887 345678899999999999999887665432
Q ss_pred CceEEEEeccccchhHHHHhhcccceeeccccCCccccccccccccccccceeeeccCC
Q 001201 304 NKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (1124)
Q Consensus 304 ~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 362 (1124)
+..+++|+.|+|+++....-... .+..+++|+.|++++|+
T Consensus 251 -----------------~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 -----------------FDNLQSLVEINLAHNNLTLLPHD--LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -----------------STTCTTCCEEECTTSCCCCCCTT--TTSSCTTCCEEECCSSC
T ss_pred -----------------hcCCCCCCEEECCCCCCCccChh--HhccccCCCEEEcCCCC
Confidence 11244566666666555432222 23678889999999887
No 60
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=3.8e-19 Score=197.27 Aligned_cols=152 Identities=15% Similarity=0.244 Sum_probs=132.5
Q ss_pred CCccEEEecCCCCCC--CCChhhhcCCCCCcEEEeec-CCCc-cCCcccCCCCCCcEEEccCCCCC-Cc-ccccCcccCc
Q 001201 108 PQLEFFCMSPRDHSI--KIPNHVFAGMSNLRGLALSN-MQFL-SLPSLFHLPLNLQTLCLDRCALG-DI-AIIGNLKKLE 181 (1124)
Q Consensus 108 ~~L~~L~L~~n~~~~--~~~~~~f~~l~~Lr~L~Ls~-~~i~-~lp~~i~~l~~Lr~L~L~~~~l~-~l-~~i~~L~~L~ 181 (1124)
.+++.|++++|.+.. .+|. .|.++++|++|++++ |.+. .+|..|+.+++|++|+|++|.+. .+ ..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 589999999999886 6775 468999999999995 8777 67999999999999999999987 34 7899999999
Q ss_pred EEEccCCCCC-ccchhhhCCCCccEEEecCCCCCC-ccCccccCCCC-CccEEEeecccCccccccccccCCCcChhhhc
Q 001201 182 ILSLVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLK-VIPPNLLSGLS-RLEDLYMGNTSVKWEFEGLNVGRSNASLQELK 258 (1124)
Q Consensus 182 ~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~-~lp~~~i~~L~-~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~ 258 (1124)
+|++++|.+. .+|..++.+++|++|++++|. +. .+|.. ++.+. +|++|++++|.+. +..+..+.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~-l~~l~~~L~~L~L~~N~l~-----------~~~~~~~~ 195 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDS-YGSFSKLFTSMTISRNRLT-----------GKIPPTFA 195 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGG-GGCCCTTCCEEECCSSEEE-----------EECCGGGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHH-HhhhhhcCcEEECcCCeee-----------ccCChHHh
Confidence 9999999998 789999999999999999998 65 78877 78888 9999999999876 34566777
Q ss_pred CCCCCCEEEeecCCCc
Q 001201 259 LLSHLTTLEIQICDAM 274 (1124)
Q Consensus 259 ~l~~L~~L~l~~~~~~ 274 (1124)
.++ |+.|++++|.+.
T Consensus 196 ~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLE 210 (313)
T ss_dssp GCC-CSEEECCSSEEE
T ss_pred CCc-ccEEECcCCccc
Confidence 776 999999988754
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=2e-17 Score=198.44 Aligned_cols=158 Identities=22% Similarity=0.265 Sum_probs=131.4
Q ss_pred CcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCC
Q 001201 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (1124)
Q Consensus 87 ~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~ 166 (1124)
+++.|++++|.+..+|..+. ++|++|++++|.+. .+|. .+++|++|+|++|.++.+|. .+++|++|+|++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 57899999999999988765 89999999999877 6775 57899999999999999987 7789999999999
Q ss_pred CCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccccccc
Q 001201 167 ALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLN 246 (1124)
Q Consensus 167 ~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~ 246 (1124)
.+..+.. .+.+|++|++++|.++.+|.. +++|++|++++|. +..+|.. +.+|+.|++++|.+.
T Consensus 112 ~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~----~~~L~~L~L~~N~l~------- 174 (622)
T 3g06_A 112 PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLT------- 174 (622)
T ss_dssp CCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCS-------
T ss_pred cCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCCc----cCCCCEEECCCCCCC-------
Confidence 9888754 678899999999999999864 4889999999997 8888753 468899999998876
Q ss_pred ccCCCcChhhhcCCCCCCEEEeecCCCcccCc
Q 001201 247 VGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (1124)
Q Consensus 247 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 278 (1124)
. +. ..+++|+.|++++|.+..++.
T Consensus 175 ----~--l~--~~~~~L~~L~Ls~N~l~~l~~ 198 (622)
T 3g06_A 175 ----S--LP--MLPSGLQELSVSDNQLASLPT 198 (622)
T ss_dssp ----C--CC--CCCTTCCEEECCSSCCSCCCC
T ss_pred ----C--Cc--ccCCCCcEEECCCCCCCCCCC
Confidence 1 11 456789999999988766554
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=3.9e-18 Score=200.13 Aligned_cols=233 Identities=21% Similarity=0.247 Sum_probs=188.6
Q ss_pred cCCcccCCCcccCCCCcCEEEeecCCCccCCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC
Q 001201 72 RNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP 149 (1124)
Q Consensus 72 ~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~--~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp 149 (1124)
.+......| .....++++|++++|.+..++... ++++|++|+|++|.+. .++...|.++++|++|+|++|.+..+|
T Consensus 62 ~~~~l~~iP-~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~ 139 (452)
T 3zyi_A 62 TRRGLSEVP-QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIP 139 (452)
T ss_dssp CSSCCSSCC-SCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred CCCCcCccC-CCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccC
Confidence 334444444 346689999999999999886543 8999999999999887 677778899999999999999999986
Q ss_pred c-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCC-CCCccch-hhhCCCCccEEEecCCCCCCccCccccCC
Q 001201 150 S-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDS-NIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSG 224 (1124)
Q Consensus 150 ~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~-~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~ 224 (1124)
. .|..+++|++|+|++|.+..+ ..+.++++|++|++++| .+..+|. .+..+.+|++|++++|. +..+|. +..
T Consensus 140 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~ 216 (452)
T 3zyi_A 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LTP 216 (452)
T ss_dssp TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CTT
T ss_pred hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--ccc
Confidence 5 589999999999999999977 57999999999999995 6778875 68999999999999998 999986 899
Q ss_pred CCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEEeCCcccccCCCCC
Q 001201 225 LSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKN 304 (1124)
Q Consensus 225 L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 304 (1124)
+.+|++|++++|.+. ...+..+.++++|+.|++++|.+..++...
T Consensus 217 l~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------------------ 261 (452)
T 3zyi_A 217 LVGLEELEMSGNHFP-----------EIRPGSFHGLSSLKKLWVMNSQVSLIERNA------------------------ 261 (452)
T ss_dssp CTTCCEEECTTSCCS-----------EECGGGGTTCTTCCEEECTTSCCCEECTTT------------------------
T ss_pred cccccEEECcCCcCc-----------ccCcccccCccCCCEEEeCCCcCceECHHH------------------------
Confidence 999999999999987 445678999999999999999876654432
Q ss_pred ceEEEEeccccchhHHHHhhcccceeeccccCCccccccccccccccccceeeeccCC
Q 001201 305 KRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (1124)
Q Consensus 305 l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 362 (1124)
+..+++|+.|+|+++....- +.-.+..+++|+.|++++|+
T Consensus 262 ----------------~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 ----------------FDGLASLVELNLAHNNLSSL--PHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ----------------TTTCTTCCEEECCSSCCSCC--CTTSSTTCTTCCEEECCSSC
T ss_pred ----------------hcCCCCCCEEECCCCcCCcc--ChHHhccccCCCEEEccCCC
Confidence 12244566666665555322 11123567889999999887
No 63
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1.1e-17 Score=182.97 Aligned_cols=193 Identities=22% Similarity=0.235 Sum_probs=166.8
Q ss_pred CCCCcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEc
Q 001201 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (1124)
Q Consensus 84 ~~~~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L 163 (1124)
...++++++++++.+..+|..+. +.++.|++++|.+. .++...|.++++|++|++++|.+..+|.. +.+++|++|+|
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 46689999999999999997764 78999999999987 56667789999999999999999988654 88999999999
Q ss_pred cCCCCCCc-ccccCcccCcEEEccCCCCCccc-hhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccc
Q 001201 164 DRCALGDI-AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWE 241 (1124)
Q Consensus 164 ~~~~l~~l-~~i~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~ 241 (1124)
++|.+..+ ..+..+++|++|++++|.++.+| ..|..+.+|++|++++|. +..+|.+.+..+++|++|++++|.+.
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-- 161 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT-- 161 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCS--
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCC--
Confidence 99999988 77889999999999999999997 569999999999999998 88999887899999999999999887
Q ss_pred cccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccc-cccccceEEEE
Q 001201 242 FEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKKLERYKIF 291 (1124)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~l~l~ 291 (1124)
......+..+++|+.|++++|.+..+|..+ ...+|+.+.+.
T Consensus 162 ---------~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 162 ---------ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp ---------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred ---------ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence 233345788999999999999999888876 44556665554
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=1.8e-17 Score=179.64 Aligned_cols=190 Identities=23% Similarity=0.340 Sum_probs=126.2
Q ss_pred CcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcc-cCCCCCCcEEEccC
Q 001201 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL-FHLPLNLQTLCLDR 165 (1124)
Q Consensus 87 ~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~-i~~l~~Lr~L~L~~ 165 (1124)
+.+.++++++.+..+|..+. ++++.|++++|.+. .++...|.++++|++|++++|.+..+|.. +..+++|++|+|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45667777777777765543 56777777777665 46655667777777777777777766543 46677777777777
Q ss_pred CCCCCc--ccccCcccCcEEEccCCCCCccch-hhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccc
Q 001201 166 CALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (1124)
Q Consensus 166 ~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~ 242 (1124)
|.+..+ ..+..+.+|++|++++|.++.+|. .++.+++|++|++++|. +..+|...++.+++|++|++++|.+.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~--- 170 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK--- 170 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS---
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCc---
Confidence 777655 456677777777777777776653 46777777777777776 66776665677777777777777665
Q ss_pred ccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccc--cccccceEEE
Q 001201 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKI 290 (1124)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~l~l 290 (1124)
......+..+++|+.|++++|.+..++... .+.+|+.+.+
T Consensus 171 --------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 171 --------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred --------EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 222334666777777777777766665543 3344554444
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=1.2e-17 Score=185.22 Aligned_cols=236 Identities=20% Similarity=0.194 Sum_probs=185.5
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC---CcccCCCCCCcEEEccC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL---PSLFHLPLNLQTLCLDR 165 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l---p~~i~~l~~Lr~L~L~~ 165 (1124)
+.++.+++.+..+|..+. ++|++|++++|.+. .+|..+|.++++|++|++++|.+..+ |..+..+++|++|+|++
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 467888888888887653 68999999999887 78888889999999999999988755 56777889999999999
Q ss_pred CCCCCc-ccccCcccCcEEEccCCCCCccch--hhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccc
Q 001201 166 CALGDI-AIIGNLKKLEILSLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (1124)
Q Consensus 166 ~~l~~l-~~i~~L~~L~~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~ 242 (1124)
|.+..+ ..+..+++|++|++++|.+..+|. .+..+++|++|++++|. +..++...++++++|++|++++|.+..
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 164 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE-- 164 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG--
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc--
Confidence 998877 668899999999999999888864 78999999999999998 766665668899999999999988751
Q ss_pred ccccccCCCcChhhhcCCCCCCEEEeecCCCcccCcc-c-cccccceEEEEeCCcc----cccCCCCCceEEEEeccc--
Q 001201 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKG-L-FSKKLERYKIFIGDEW----DWSGNYKNKRVLKLKLYT-- 314 (1124)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-~-~~~~L~~l~l~~~~~~----~~~~~~~~l~~l~l~~~~-- 314 (1124)
...+..+..+++|+.|++++|.+..++.. + .+++|+.+++..+.+. .....+.+++.+++..+.
T Consensus 165 --------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 165 --------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp --------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred --------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 12345678889999999999998877443 3 6788999888766542 234566788999988765
Q ss_pred cchhHHHHhh-cccceeeccccCC
Q 001201 315 SNVDEVIMQL-KGIEELYLDEVPG 337 (1124)
Q Consensus 315 ~~l~~~~~~l-~~L~~L~L~~~~~ 337 (1124)
...+..+..+ ++|+.|+++++..
T Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 237 TSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp BCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ccCHHHHHhhhccCCEEEccCCCe
Confidence 2222233444 4899999988654
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=3.6e-17 Score=177.40 Aligned_cols=189 Identities=23% Similarity=0.362 Sum_probs=164.2
Q ss_pred ecCCcccCCCcccCCCCcCEEEeecCCCccCCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC
Q 001201 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (1124)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~--~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l 148 (1124)
+.+.....+|. ....++++|++++|.+..++... ++++|++|++++|.+. .++..+|.++++|++|++++|.+..+
T Consensus 23 ~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~ 100 (270)
T 2o6q_A 23 CSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100 (270)
T ss_dssp CTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCC
T ss_pred ccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcC
Confidence 44445554443 45678999999999999998643 8999999999999887 78888999999999999999999988
Q ss_pred Cc-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCccchh-hhCCCCccEEEecCCCCCCccCccccCC
Q 001201 149 PS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSG 224 (1124)
Q Consensus 149 p~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~ 224 (1124)
|. .+..+++|++|++++|.+..+ ..++.+++|++|++++|.+..+|.. ++.+++|++|++++|. +..++...+.+
T Consensus 101 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 179 (270)
T 2o6q_A 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDK 179 (270)
T ss_dssp CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTT
T ss_pred CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhcc
Confidence 64 578999999999999999877 5689999999999999999999865 8999999999999998 99998877899
Q ss_pred CCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCC
Q 001201 225 LSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1124)
Q Consensus 225 L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (1124)
+++|++|++++|.+. ......+..+++|+.|++++|..
T Consensus 180 l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 180 LTELKTLKLDNNQLK-----------RVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CTTCCEEECCSSCCS-----------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCcCEEECCCCcCC-----------cCCHHHhccccCCCEEEecCCCe
Confidence 999999999999887 33344678899999999999975
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=1.8e-19 Score=200.58 Aligned_cols=242 Identities=14% Similarity=0.076 Sum_probs=138.3
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEc
Q 001201 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (1124)
Q Consensus 106 ~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L 185 (1124)
.+++|++|++++|.+. .++...|.++++|++|++++|.+..++. +..+++|++|++++|.+..+ ...++|++|++
T Consensus 32 ~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l---~~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE---EECTTCCEEEC
T ss_pred cCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc---cCCCCcCEEEC
Confidence 3556777777777666 4555566777777777777777765543 67777777777777765433 23367777777
Q ss_pred cCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhh-cCCCCCC
Q 001201 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQEL-KLLSHLT 264 (1124)
Q Consensus 186 s~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l-~~l~~L~ 264 (1124)
++|.+..++. ..+.+|++|++++|. +..++...++.+++|++|++++|.+. ...+..+ ..+++|+
T Consensus 107 ~~n~l~~~~~--~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 107 ANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID-----------TVNFAELAASSDTLE 172 (317)
T ss_dssp CSSCCSEEEE--CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCC-----------EEEGGGGGGGTTTCC
T ss_pred CCCccCCcCc--cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCC-----------cccHHHHhhccCcCC
Confidence 7777776653 235667777777776 66665544666777777777777665 2223333 3566777
Q ss_pred EEEeecCCCcccCccccccccceEEEEeCCcccccCCCCCceEEEEeccccchhHHHHhhcccceeeccccCCccccccc
Q 001201 265 TLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYD 344 (1124)
Q Consensus 265 ~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~ 344 (1124)
.|++++|.+..++....+.+|+.++++.+.+ ..++..+..+++|+.|+++++.. ......
T Consensus 173 ~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l-------------------~~l~~~~~~l~~L~~L~L~~N~l-~~l~~~ 232 (317)
T 3o53_A 173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKL-------------------AFMGPEFQSAAGVTWISLRNNKL-VLIEKA 232 (317)
T ss_dssp EEECTTSCCCEEECCCCCTTCCEEECCSSCC-------------------CEECGGGGGGTTCSEEECTTSCC-CEECTT
T ss_pred EEECCCCcCcccccccccccCCEEECCCCcC-------------------CcchhhhcccCcccEEECcCCcc-cchhhH
Confidence 7777777765554433334444443332222 11221233455666666665432 222222
Q ss_pred cccccccccceeeeccCCCeeEEeeCCcc-cccccccccceeeccccccc
Q 001201 345 LDIEGFLQLKHLHVQNNPFILFIVDSMAW-VRYNAFLLLESLVLHNLIHL 393 (1124)
Q Consensus 345 ~~~~~l~~L~~L~L~~~~~l~~l~~~~~~-~~~~~~~~L~~L~l~~~~~l 393 (1124)
+ ..+++|+.|++++|+.... .. .....++.|+.+++.++..+
T Consensus 233 ~--~~l~~L~~L~l~~N~~~~~-----~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 233 L--RFSQNLEHFDLRGNGFHCG-----TLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp C--CCCTTCCEEECTTCCCBHH-----HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred h--hcCCCCCEEEccCCCccCc-----CHHHHHhccccceEEECCCchhc
Confidence 2 4566677777776652200 00 12334455555555554443
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=1.3e-19 Score=214.02 Aligned_cols=151 Identities=15% Similarity=0.183 Sum_probs=63.4
Q ss_pred CcCEEEeecCCCccCCCC--C-CCCCccEEEecCCCCCCC---CChhhhcCCCCCcEEEeecCCCccC-Ccc-cCCCC--
Q 001201 87 NCPTIFLHDCKHWEVPEG--L-EYPQLEFFCMSPRDHSIK---IPNHVFAGMSNLRGLALSNMQFLSL-PSL-FHLPL-- 156 (1124)
Q Consensus 87 ~lr~L~l~~n~i~~l~~~--~-~~~~L~~L~L~~n~~~~~---~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~-i~~l~-- 156 (1124)
++++|++++|++...+.. + .+++|++|++++|.+... .....|..+++|++|++++|.+... +.. ...+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 344555555554332211 1 344555555555543311 0012334455555555555554421 111 11222
Q ss_pred --CCcEEEccCCCCCC-----c-ccccCcccCcEEEccCCCCCcc-chhh-----hCCCCccEEEecCCCCCCccC----
Q 001201 157 --NLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIEQL-PEEM-----AQLTQLRLFDLSGCSKLKVIP---- 218 (1124)
Q Consensus 157 --~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~Ls~~~i~~l-p~~i-----~~L~~L~~L~L~~~~~l~~lp---- 218 (1124)
+|++|+|++|.+.. + ..+..+++|++|++++|.+... +..+ ....+|++|++++|. +....
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l 162 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPL 162 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHH
Confidence 45555555555442 1 3445555555555555544321 1111 113345555555554 33211
Q ss_pred ccccCCCCCccEEEeecccC
Q 001201 219 PNLLSGLSRLEDLYMGNTSV 238 (1124)
Q Consensus 219 ~~~i~~L~~L~~L~l~~~~i 238 (1124)
...+..+++|++|++++|.+
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBC
T ss_pred HHHHhhCCCCCEEECcCCCc
Confidence 01133445555555555544
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=1.9e-18 Score=211.27 Aligned_cols=329 Identities=14% Similarity=0.091 Sum_probs=183.3
Q ss_pred cccccceeeecccccccccccCccc--ccCCCccEEEEecCCCccccCcchhhhhccCCCEEEEecccc------cccee
Q 001201 529 VFPNLETLELCAISTEKIWCNQLAA--VYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSS------LESIV 600 (1124)
Q Consensus 529 ~~~~L~~L~l~~~~l~~~~~~~~~~--~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~C~~------l~~i~ 600 (1124)
.+++|++|++++|. ..+....+.. ..+++|+.|++++|..++.+ + ..+..+++|++|+++.|.. +..++
T Consensus 182 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l-~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 182 TYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKL-A-TLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp TCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH-H-HHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred cCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH-H-HHHhcCCcceEcccccccCccchhhHHHHH
Confidence 45677788877775 1111111100 12588888888888777764 3 4567788888888776642 11111
Q ss_pred cccccccccceeecCcccee-ccccCcccceecCCCccCCCCcccEEEEecCCcceeecccccccccccCCccccccccc
Q 001201 601 GKESGEEATTTFVFPKVTFL-KLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQA 679 (1124)
Q Consensus 601 ~~~~~~~~~~~~~~~~L~~L-~L~~c~~L~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~ 679 (1124)
.. ...+++|+.| .+.+... ..++. ....+++|+.|++++|. +..-...
T Consensus 259 ~~--------l~~~~~L~~Ls~~~~~~~-~~l~~--~~~~~~~L~~L~L~~~~-l~~~~l~------------------- 307 (594)
T 2p1m_B 259 VA--------LSGCKELRCLSGFWDAVP-AYLPA--VYSVCSRLTTLNLSYAT-VQSYDLV------------------- 307 (594)
T ss_dssp HH--------HHTCTTCCEEECCBTCCG-GGGGG--GHHHHTTCCEEECTTCC-CCHHHHH-------------------
T ss_pred HH--------HhcCCCcccccCCcccch-hhHHH--HHHhhCCCCEEEccCCC-CCHHHHH-------------------
Confidence 00 0134555555 2222111 11111 01136778888888876 4421100
Q ss_pred eeeeeeecCCceEEeeccccccccccccCC--ccccccccEEEEeeC--------CCc--ccchHHHhhcCCCcEEEEEc
Q 001201 680 LFLVEKVTSKLEELKLSGKDIAMICQSQFP--KHIFRNLKNLEVVND--------ESE--NFRIGFLERFHNLEKLELRW 747 (1124)
Q Consensus 680 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~i~~c--------~~l--~~~~~~l~~l~~L~~L~i~c 747 (1124)
..-..+++|+.|++++| .... .++ ...+++|++|++++| ..+ ........++++|+.|.+.|
T Consensus 308 --~~~~~~~~L~~L~l~~~-~~~~---~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 308 --KLLCQCPKLQRLWVLDY-IEDA---GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp --HHHTTCTTCCEEEEEGG-GHHH---HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred --HHHhcCCCcCEEeCcCc-cCHH---HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 00024678888888877 2211 111 124678888888553 333 11122334689999997778
Q ss_pred ceeeEEccChhhhhhhhhccccceEecc-----CcccccccccC-CC-CcccccCcccEEEEeccCCcccc-cCCcc-cc
Q 001201 748 SSYKEIFSNEEIVEHAEMLTQVKSLKLW-----ELSDLMYIWKQ-DS-KLDSITENLESLEVWWCENLINL-VPSSA-SF 818 (1124)
Q Consensus 748 ~~l~~l~~~~~~~~~~~~l~~L~~L~l~-----~~~~L~~i~~~-~~-~~~~~l~~L~~L~i~~c~~l~~l-~~~~~-~~ 818 (1124)
+++....... -...+++|++|++. +|..++..+.. +. .....+++|++|++++ .+..- +..+. .+
T Consensus 382 ~~l~~~~~~~----l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~ 455 (594)
T 2p1m_B 382 RQMTNAALIT----IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYA 455 (594)
T ss_dssp SCCCHHHHHH----HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHC
T ss_pred CCcCHHHHHH----HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhc
Confidence 8775421110 11357899999998 67777643210 00 0134578999999976 44221 11222 37
Q ss_pred CCccEEEEcCCcCccccchhHHhhccCCccEEEEecccchhhhhccCcccccccccccccceeecccCCCcccccCCCcc
Q 001201 819 KNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYT 898 (1124)
Q Consensus 819 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~ 898 (1124)
++|+.|++++|. +........+.++++|++|++++|+.-....... ...+++|+.|.+++|+. ..-......
T Consensus 456 ~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~------~~~l~~L~~L~l~~~~~-~~~~~~~l~ 527 (594)
T 2p1m_B 456 KKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN------ASKLETMRSLWMSSCSV-SFGACKLLG 527 (594)
T ss_dssp TTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT------GGGGGGSSEEEEESSCC-BHHHHHHHH
T ss_pred hhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH------HHhCCCCCEEeeeCCCC-CHHHHHHHH
Confidence 889999999986 5554444555778999999999998522221111 12478999999999985 221111111
Q ss_pred ccCCCccEEEEcc
Q 001201 899 LKFPSLEDLFVIE 911 (1124)
Q Consensus 899 ~~~~sL~~L~i~~ 911 (1124)
..+|.|+...+..
T Consensus 528 ~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 528 QKMPKLNVEVIDE 540 (594)
T ss_dssp HHCTTEEEEEECS
T ss_pred HhCCCCEEEEecC
Confidence 3456665544443
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=1.9e-17 Score=176.11 Aligned_cols=198 Identities=14% Similarity=0.203 Sum_probs=168.8
Q ss_pred ccCCCcccCCCCcCEEEeecCCCccCCCCC--CCCCccEEEecCCC-CCCCCChhhhcCCCCCcEEEeec-CCCccCC-c
Q 001201 76 QIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRD-HSIKIPNHVFAGMSNLRGLALSN-MQFLSLP-S 150 (1124)
Q Consensus 76 ~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~--~~~~L~~L~L~~n~-~~~~~~~~~f~~l~~Lr~L~Ls~-~~i~~lp-~ 150 (1124)
...+|. ...++++|++++|.+..++... ++++|++|++++|. +. .++...|.++++|++|++++ |.+..+| .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 445554 6679999999999999998743 89999999999997 55 78888899999999999998 9999886 5
Q ss_pred ccCCCCCCcEEEccCCCCCCcccccCcccCc---EEEccCC-CCCccch-hhhCCCCcc-EEEecCCCCCCccCccccCC
Q 001201 151 LFHLPLNLQTLCLDRCALGDIAIIGNLKKLE---ILSLVDS-NIEQLPE-EMAQLTQLR-LFDLSGCSKLKVIPPNLLSG 224 (1124)
Q Consensus 151 ~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~---~L~Ls~~-~i~~lp~-~i~~L~~L~-~L~L~~~~~l~~lp~~~i~~ 224 (1124)
.|..+++|++|++++|.+..+..++.+.+|+ +|++++| .++.+|. .|..+.+|+ +|++++|. +..+|...+..
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~ 178 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG 178 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC
Confidence 7899999999999999998886688888888 9999999 9999986 589999999 99999998 88999885555
Q ss_pred CCCccEEEeeccc-CccccccccccCCCcChhhhcCC-CCCCEEEeecCCCcccCccccccccceEEE
Q 001201 225 LSRLEDLYMGNTS-VKWEFEGLNVGRSNASLQELKLL-SHLTTLEIQICDAMILPKGLFSKKLERYKI 290 (1124)
Q Consensus 225 L~~L~~L~l~~~~-i~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l 290 (1124)
.+|++|++++|. +. ......+..+ ++|+.|++++|.+..+|.. .+.+|+.|.+
T Consensus 179 -~~L~~L~L~~n~~l~-----------~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 179 -TKLDAVYLNKNKYLT-----------VIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp -CEEEEEECTTCTTCC-----------EECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred -CCCCEEEcCCCCCcc-----------cCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 899999999994 76 2234567888 9999999999999888776 4566666654
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=4.6e-17 Score=179.86 Aligned_cols=190 Identities=15% Similarity=0.182 Sum_probs=164.6
Q ss_pred CCCCcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEc
Q 001201 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (1124)
Q Consensus 84 ~~~~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L 163 (1124)
.++++++|++++|.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 46789999999999999885558999999999999887 5665 789999999999999999886 6999999999999
Q ss_pred cCCCCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccc
Q 001201 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (1124)
Q Consensus 164 ~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~ 243 (1124)
++|.+..+..+..+++|++|++++|.+..+|. ++.+.+|++|++++|. +..++. +..+++|++|++++|.+.
T Consensus 115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~---- 186 (308)
T 1h6u_A 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKIS---- 186 (308)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccC----
Confidence 99999988779999999999999999999886 8999999999999998 888876 899999999999999876
Q ss_pred cccccCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEEeCC
Q 001201 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGD 294 (1124)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~ 294 (1124)
.+..+..+++|+.|++++|.+..++....+++|+.+++..+.
T Consensus 187 ---------~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 187 ---------DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp ---------CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred ---------cChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 233488899999999999998877753366777777776544
No 72
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=8e-17 Score=172.50 Aligned_cols=174 Identities=21% Similarity=0.306 Sum_probs=151.8
Q ss_pred CcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC-cccCCCCCCcEEEccC
Q 001201 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDR 165 (1124)
Q Consensus 87 ~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~ 165 (1124)
..++++++++.+..+|..+. +.++.|++++|.+. .++...|.++++|++|+|++|.+..++ ..+..+++|++|+|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45789999999999998765 78999999999987 566677899999999999999999874 4589999999999999
Q ss_pred CCCCCc--ccccCcccCcEEEccCCCCCccchh-hhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccc
Q 001201 166 CALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (1124)
Q Consensus 166 ~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~ 242 (1124)
|.+..+ ..+..+.+|++|++++|.++.+|.. ++.+.+|++|++++|. +..+|.+.++.+++|++|++++|.+.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~--- 168 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQ--- 168 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS---
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCC---
Confidence 999877 5788999999999999999999865 6899999999999998 88998877899999999999999887
Q ss_pred ccccccCCCcChhhhcCCCCCCEEEeecCCCc
Q 001201 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (1124)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (1124)
......+..+++|+.|++++|.+.
T Consensus 169 --------~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 169 --------SVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred --------ccCHHHHhCCCCCCEEEeeCCcee
Confidence 334457888999999999998864
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=4.5e-17 Score=177.44 Aligned_cols=197 Identities=21% Similarity=0.251 Sum_probs=158.6
Q ss_pred cCCCCcCEEEeecCCCccCCCC-C-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC-cccCCCCCCc
Q 001201 83 DMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQ 159 (1124)
Q Consensus 83 ~~~~~lr~L~l~~n~i~~l~~~-~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr 159 (1124)
....++++|++++|.+..++.. + ++++|++|++++|.+. .++...|.++++|++|++++|.+..++ ..+..+++|+
T Consensus 25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 4567899999999999888763 3 7899999999999877 677777899999999999999998775 6789999999
Q ss_pred EEEccCCCCCCc--ccccCcccCcEEEccCCCCCc--cchhhhCCCCccEEEecCCCCCCccCccccCCCCCcc----EE
Q 001201 160 TLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLE----DL 231 (1124)
Q Consensus 160 ~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~----~L 231 (1124)
+|++++|.+..+ ..++++++|++|++++|.+.. +|..++.+++|++|++++|. +..++...+..+.+|+ +|
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEE
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceee
Confidence 999999998877 468899999999999999886 68899999999999999998 8888766577666666 89
Q ss_pred EeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccc--cccccceEEEEeC
Q 001201 232 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIG 293 (1124)
Q Consensus 232 ~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~l~l~~~ 293 (1124)
++++|.+.. ... ......+|+.|++++|.+..++..+ .+.+|+.+++..+
T Consensus 183 ~ls~n~l~~-----------~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 183 DLSLNPMNF-----------IQP-GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ECCSSCCCE-----------ECT-TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ecCCCcccc-----------cCc-cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 999988762 112 2223347999999999988877664 4566666655433
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=4.3e-17 Score=177.63 Aligned_cols=179 Identities=18% Similarity=0.307 Sum_probs=145.5
Q ss_pred EEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCc-ccCCCCCCcEEEccCCCC
Q 001201 90 TIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCAL 168 (1124)
Q Consensus 90 ~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l 168 (1124)
.++..+..+.++|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+..++. .+..+++|++|+|++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC-CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 45555666778887653 67999999999887 6777678999999999999999998854 799999999999999999
Q ss_pred CCc--ccccCcccCcEEEccCCCCCccch-hhhCCCCccEEEecCCCCCCc--cCccccCCCCCccEEEeecccCccccc
Q 001201 169 GDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (1124)
Q Consensus 169 ~~l--~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~i~~~~~ 243 (1124)
..+ ..+.++.+|++|++++|.+..++. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+....
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~- 165 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY- 165 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEEC-
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcCC-
Confidence 866 679999999999999999998875 69999999999999998 776 5655 899999999999999887111
Q ss_pred cccccCCCcChhhhcCCCCCC-EEEeecCCCcccCccc
Q 001201 244 GLNVGRSNASLQELKLLSHLT-TLEIQICDAMILPKGL 280 (1124)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~l~~~~ 280 (1124)
...+..+..++.|. .|++++|.+..++...
T Consensus 166 -------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~ 196 (276)
T 2z62_A 166 -------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196 (276)
T ss_dssp -------GGGGHHHHTCTTCCEEEECCSSCCCEECTTS
T ss_pred -------HHHhhhhhhccccceeeecCCCcccccCccc
Confidence 12234455555555 8999999887766544
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=6.4e-17 Score=176.76 Aligned_cols=159 Identities=24% Similarity=0.304 Sum_probs=141.7
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccCCCCCCcccccCcccCcEEE
Q 001201 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILS 184 (1124)
Q Consensus 106 ~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~ 184 (1124)
.++++++++++++.+. .+|..++ +++++|++++|.+..+ |..|..+++|++|+|++|.+..+...+.+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 5688999999999887 7887653 6899999999999987 568999999999999999999886668999999999
Q ss_pred ccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCC
Q 001201 185 LVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLT 264 (1124)
Q Consensus 185 Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~ 264 (1124)
+++|.+..+|..+..+.+|++|++++|. +..+|.+.+.++++|++|++++|.+. ......+..+++|+
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELK-----------TLPPGLLTPTPKLE 151 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCC-----------CCCTTTTTTCTTCC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCC-----------ccChhhcccccCCC
Confidence 9999999999999999999999999998 99998877999999999999999887 33445678899999
Q ss_pred EEEeecCCCcccCccc
Q 001201 265 TLEIQICDAMILPKGL 280 (1124)
Q Consensus 265 ~L~l~~~~~~~l~~~~ 280 (1124)
.|++++|.+..++..+
T Consensus 152 ~L~L~~N~l~~l~~~~ 167 (290)
T 1p9a_G 152 KLSLANNNLTELPAGL 167 (290)
T ss_dssp EEECTTSCCSCCCTTT
T ss_pred EEECCCCcCCccCHHH
Confidence 9999999988877654
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=2.6e-18 Score=190.64 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=20.2
Q ss_pred cccceeeccccCCccccccccccccccccceeeeccCC
Q 001201 325 KGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (1124)
Q Consensus 325 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 362 (1124)
++|+.|+++++.-..- +.+ ..+++|++|++++|+
T Consensus 274 ~~L~~L~Ls~N~l~~~--p~~--~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN--PSP--DELPQVGNLSLKGNP 307 (312)
T ss_dssp SEEEEEECCSSCCCSC--CCT--TTSCEEEEEECTTCT
T ss_pred CCceEEECCCCCCCCC--hhH--hhCCCCCEEeccCCC
Confidence 3455555555554332 222 567788888888776
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=9.5e-16 Score=183.97 Aligned_cols=250 Identities=17% Similarity=0.105 Sum_probs=181.3
Q ss_pred EEecCCcccCCCcccCCCCcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC
Q 001201 69 FMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (1124)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l 148 (1124)
..+.+......|. ...+++++|++++|.+..+|. .+++|++|+|++|.+. .+|. .+++|++|++++|.+..+
T Consensus 45 L~ls~n~L~~lp~-~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l 116 (622)
T 3g06_A 45 LNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHL 116 (622)
T ss_dssp EECCSSCCSCCCS-CCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCC
T ss_pred EEecCCCcCccCh-hhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCC
Confidence 3455555555543 345899999999999999988 6799999999999987 6775 689999999999999999
Q ss_pred CcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCc
Q 001201 149 PSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL 228 (1124)
Q Consensus 149 p~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L 228 (1124)
|. .+.+|++|++++|.+..+.. .+++|++|++++|.++.+|. .+.+|+.|++++|. +..+| ..+++|
T Consensus 117 ~~---~l~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~-l~~l~----~~~~~L 183 (622)
T 3g06_A 117 PA---LPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQ-LTSLP----MLPSGL 183 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCC----CCCTTC
T ss_pred CC---CCCCcCEEECCCCCCCcCCC--CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCC-CCCCc----ccCCCC
Confidence 87 67899999999999888743 24899999999999999985 45789999999998 88888 346899
Q ss_pred cEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEEeCCcccccCCCCCceEE
Q 001201 229 EDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVL 308 (1124)
Q Consensus 229 ~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l 308 (1124)
++|++++|.+.. .+ ..+++|+.|++++|.+..++.. ..+|+.|+++.+.+-....
T Consensus 184 ~~L~Ls~N~l~~------------l~---~~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp~-------- 238 (622)
T 3g06_A 184 QELSVSDNQLAS------------LP---TLPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPV-------- 238 (622)
T ss_dssp CEEECCSSCCSC------------CC---CCCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCC--------
T ss_pred cEEECCCCCCCC------------CC---CccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCCC--------
Confidence 999999998761 11 1246899999999998887764 3677777776554422222
Q ss_pred EEeccccchhHHHHhhcccceeeccccCCccccccccccccccccceeeeccCCCeeEEeeCCcccccccccccceeecc
Q 001201 309 KLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLH 388 (1124)
Q Consensus 309 ~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~ 388 (1124)
.+++|+.|+++++. +..+ +. .+++|+.|++++|. +..++ .....+++|+.|+++
T Consensus 239 --------------~l~~L~~L~Ls~N~-L~~l-p~----~~~~L~~L~Ls~N~-L~~lp-----~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 239 --------------LPSELKELMVSGNR-LTSL-PM----LPSGLLSLSVYRNQ-LTRLP-----ESLIHLSSETTVNLE 292 (622)
T ss_dssp --------------CCTTCCEEECCSSC-CSCC-CC----CCTTCCEEECCSSC-CCSCC-----GGGGGSCTTCEEECC
T ss_pred --------------CCCcCcEEECCCCC-CCcC-Cc----ccccCcEEeCCCCC-CCcCC-----HHHhhccccCEEEec
Confidence 23456666665542 2221 11 34566666666664 33222 124455666666666
Q ss_pred cc
Q 001201 389 NL 390 (1124)
Q Consensus 389 ~~ 390 (1124)
++
T Consensus 293 ~N 294 (622)
T 3g06_A 293 GN 294 (622)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=8.6e-17 Score=170.99 Aligned_cols=170 Identities=16% Similarity=0.248 Sum_probs=132.5
Q ss_pred eecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCC-CccCCc-ccCCCCCCcEEEccC-CCCC
Q 001201 93 LHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ-FLSLPS-LFHLPLNLQTLCLDR-CALG 169 (1124)
Q Consensus 93 l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~-i~~lp~-~i~~l~~Lr~L~L~~-~~l~ 169 (1124)
+..+.+.++|. + .++|++|++++|.+. .++...|.++++|++|++++|. +..+|. +|..+++|++|++++ |.++
T Consensus 18 v~c~~l~~ip~-~-~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 18 VTCKDIQRIPS-L-PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp EEECSCSSCCC-C-CTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC
T ss_pred eEccCccccCC-C-CCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee
Confidence 33444778887 3 458999999999887 6787788999999999999997 888865 788999999999998 8888
Q ss_pred Cc--ccccCcccCcEEEccCCCCCccchhhhCCCCcc---EEEecCCCCCCccCccccCCCCCcc-EEEeecccCccccc
Q 001201 170 DI--AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLR---LFDLSGCSKLKVIPPNLLSGLSRLE-DLYMGNTSVKWEFE 243 (1124)
Q Consensus 170 ~l--~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~---~L~L~~~~~l~~lp~~~i~~L~~L~-~L~l~~~~i~~~~~ 243 (1124)
.+ ..+.++++|++|++++|.++.+|. ++.+.+|+ +|++++|..+..+|...+.++++|+ +|++++|.+...
T Consensus 95 ~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i-- 171 (239)
T 2xwt_C 95 YIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV-- 171 (239)
T ss_dssp EECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE--
T ss_pred EcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc--
Confidence 76 568889999999999999988886 78888887 9999998338888887788889999 999888877611
Q ss_pred cccccCCCcChhhhcCCCCCCEEEeecCC-CcccCc
Q 001201 244 GLNVGRSNASLQELKLLSHLTTLEIQICD-AMILPK 278 (1124)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~l~~ 278 (1124)
....+.. ++|+.|++++|. +..++.
T Consensus 172 ---------~~~~~~~-~~L~~L~L~~n~~l~~i~~ 197 (239)
T 2xwt_C 172 ---------QGYAFNG-TKLDAVYLNKNKYLTVIDK 197 (239)
T ss_dssp ---------CTTTTTT-CEEEEEECTTCTTCCEECT
T ss_pred ---------CHhhcCC-CCCCEEEcCCCCCcccCCH
Confidence 1122333 577888887773 554443
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=2.9e-16 Score=170.26 Aligned_cols=177 Identities=23% Similarity=0.327 Sum_probs=153.5
Q ss_pred cCCCCcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCc-ccCCCCCCcEE
Q 001201 83 DMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTL 161 (1124)
Q Consensus 83 ~~~~~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L 161 (1124)
..+++++.|++.+|.+..++....+++|++|++++|.+. .++ .|.++++|++|++++|.+..+|. .++.+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 456789999999999988876668999999999999887 354 47899999999999999998865 47999999999
Q ss_pred EccCCCCCCc--ccccCcccCcEEEccCCCCCccchh-hhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccC
Q 001201 162 CLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 238 (1124)
Q Consensus 162 ~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i 238 (1124)
++++|.+..+ ..++.+.+|++|++++|.++.+|.. ++.+++|++|++++|. +..++...++.+++|++|++++|.+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcC
Confidence 9999999877 4589999999999999999988764 6899999999999998 8888887789999999999999988
Q ss_pred ccccccccccCCCcChhhhcCCCCCCEEEeecCCCc
Q 001201 239 KWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (1124)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (1124)
. ......++.+++|+.|++++|...
T Consensus 194 ~-----------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 194 K-----------SVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp S-----------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C-----------ccCHHHHhCCcCCCEEEccCCCcc
Confidence 7 334456788999999999998753
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=3.2e-16 Score=173.15 Aligned_cols=188 Identities=19% Similarity=0.225 Sum_probs=163.7
Q ss_pred ecCCcccCCCcccCCCCcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCc
Q 001201 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS 150 (1124)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~ 150 (1124)
+.+.....++....++++++|++++|.+..++....+++|++|++++|.+. .++ .|.++++|++|++++|.+..+|.
T Consensus 48 l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~~~ 124 (308)
T 1h6u_A 48 AFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK-NVS--AIAGLQSIKTLDLTSTQITDVTP 124 (308)
T ss_dssp CTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS-CCG--GGTTCTTCCEEECTTSCCCCCGG
T ss_pred eeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCC-Cch--hhcCCCCCCEEECCCCCCCCchh
Confidence 444444455555678999999999999998888558999999999999977 454 47899999999999999999875
Q ss_pred ccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccE
Q 001201 151 LFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLED 230 (1124)
Q Consensus 151 ~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~ 230 (1124)
+..+++|++|++++|.+..+..++.+++|++|++++|.+..+|. +..+.+|++|++++|. +..++. +..+++|++
T Consensus 125 -l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~ 199 (308)
T 1h6u_A 125 -LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPNLIE 199 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCE
T ss_pred -hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCCCCE
Confidence 99999999999999999998779999999999999999999987 9999999999999998 888886 799999999
Q ss_pred EEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCcc
Q 001201 231 LYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKG 279 (1124)
Q Consensus 231 L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 279 (1124)
|++++|.+. ....+..+++|+.|++++|.+...|..
T Consensus 200 L~L~~N~l~-------------~~~~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 200 VHLKNNQIS-------------DVSPLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp EECTTSCCC-------------BCGGGTTCTTCCEEEEEEEEEECCCEE
T ss_pred EEccCCccC-------------ccccccCCCCCCEEEccCCeeecCCee
Confidence 999999887 122488999999999999987665543
No 81
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=1.4e-16 Score=174.18 Aligned_cols=174 Identities=24% Similarity=0.352 Sum_probs=154.5
Q ss_pred cCCCCcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEE
Q 001201 83 DMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (1124)
Q Consensus 83 ~~~~~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~ 162 (1124)
..++++++|++++|.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..+|. +..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 346789999999999999876558999999999999887 4655 7899999999999999998864 99999999999
Q ss_pred ccCCCCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccc
Q 001201 163 LDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (1124)
Q Consensus 163 L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~ 242 (1124)
+++|.+..+..+..+++|++|++++|.++.+ ..++.+++|++|++++|. +..++. +..+++|++|++++|.+.
T Consensus 119 L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~--- 191 (291)
T 1h6t_A 119 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS--- 191 (291)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred CCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCC---
Confidence 9999999998899999999999999999988 579999999999999998 888876 899999999999999886
Q ss_pred ccccccCCCcChhhhcCCCCCCEEEeecCCCcccC
Q 001201 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMILP 277 (1124)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 277 (1124)
.+..+..+++|+.|++++|.+...+
T Consensus 192 ----------~l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 ----------DLRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ----------BCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred ----------CChhhccCCCCCEEECcCCcccCCc
Confidence 2346889999999999999865543
No 82
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=1.6e-17 Score=184.73 Aligned_cols=189 Identities=14% Similarity=0.147 Sum_probs=138.2
Q ss_pred CCCcCEEEeecCCCccCCCC-C-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEE
Q 001201 85 LKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (1124)
Q Consensus 85 ~~~lr~L~l~~n~i~~l~~~-~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~ 162 (1124)
.+++++|++++|.+..++.. + .+++|++|++++|.+.. +++ |.++++|++|++++|.+..+|. .++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh--hhhcCCCCEEECcCCccccccC----CCCcCEEE
Confidence 44788899998888877643 2 78889999998888763 333 6888889999999988887653 37888888
Q ss_pred ccCCCCCCcccccCcccCcEEEccCCCCCccch-hhhCCCCccEEEecCCCCCCccCcccc-CCCCCccEEEeecccCcc
Q 001201 163 LDRCALGDIAIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLL-SGLSRLEDLYMGNTSVKW 240 (1124)
Q Consensus 163 L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i-~~L~~L~~L~l~~~~i~~ 240 (1124)
+++|.+..+.. ..+++|++|++++|.++.++. .++.+++|++|++++|. +..++...+ ..+++|++|++++|.+..
T Consensus 106 l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 106 AANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 88888776521 236778888888888887754 67888888888888887 666543334 467888888888887761
Q ss_pred ccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccc-cccccceEEEEeCCc
Q 001201 241 EFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKKLERYKIFIGDE 295 (1124)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~l~l~~~~~ 295 (1124)
......+++|+.|++++|.+..++..+ .+.+|+.+++..+.+
T Consensus 184 -------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 184 -------------VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL 226 (317)
T ss_dssp -------------EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC
T ss_pred -------------cccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcc
Confidence 122334778888888888887777665 566777777665443
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=7e-17 Score=190.24 Aligned_cols=150 Identities=17% Similarity=0.104 Sum_probs=79.6
Q ss_pred CCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccC
Q 001201 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVD 187 (1124)
Q Consensus 108 ~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~ 187 (1124)
++|++|+|++|.+. .+++..|.++++|++|+|++|.+..++. ++.+++|++|+|++|.+..+ ...++|++|++++
T Consensus 34 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l---~~~~~L~~L~L~~ 108 (487)
T 3oja_A 34 WNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLHAAN 108 (487)
T ss_dssp GGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE---EECTTCCEEECCS
T ss_pred CCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC---CCCCCcCEEECcC
Confidence 35566666665554 3444445566666666666665554433 55566666666666554333 2225566666666
Q ss_pred CCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhc-CCCCCCEE
Q 001201 188 SNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELK-LLSHLTTL 266 (1124)
Q Consensus 188 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~-~l~~L~~L 266 (1124)
|.+..+|. ..+++|++|++++|. +..++...++.+++|++|++++|.+. ...+..+. .+++|+.|
T Consensus 109 N~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 109 NNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID-----------TVNFAELAASSDTLEHL 174 (487)
T ss_dssp SCCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCC-----------EEEGGGGGGGTTTCCEE
T ss_pred CcCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCC-----------CcChHHHhhhCCcccEE
Confidence 65555543 234556666666655 44443333555566666666665554 12233333 45556666
Q ss_pred EeecCCCccc
Q 001201 267 EIQICDAMIL 276 (1124)
Q Consensus 267 ~l~~~~~~~l 276 (1124)
++++|.+..+
T Consensus 175 ~Ls~N~l~~~ 184 (487)
T 3oja_A 175 NLQYNFIYDV 184 (487)
T ss_dssp ECTTSCCCEE
T ss_pred ecCCCccccc
Confidence 6666555444
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=3.3e-16 Score=169.85 Aligned_cols=183 Identities=24% Similarity=0.323 Sum_probs=156.3
Q ss_pred ecCCcccCCCcccCCCCcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCc
Q 001201 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS 150 (1124)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~ 150 (1124)
+.+.....++....++++++|++++|.+..++....+++|++|++++|.+. .++..+|.++++|++|++++|.+..+|.
T Consensus 48 l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 126 (272)
T 3rfs_A 48 ANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPD 126 (272)
T ss_dssp CTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred eCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCH
Confidence 444445555556678999999999999998875558999999999999887 6887888999999999999999998865
Q ss_pred -ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCccchh-hhCCCCccEEEecCCCCCCccCccccCCCC
Q 001201 151 -LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLS 226 (1124)
Q Consensus 151 -~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~ 226 (1124)
.++.+++|++|++++|.+..+ ..++.+++|++|++++|.++.+|.. ++.+++|++|++++|. +..++...++.++
T Consensus 127 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 205 (272)
T 3rfs_A 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLT 205 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCT
T ss_pred HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCc
Confidence 489999999999999999877 4579999999999999999988764 6999999999999998 8888887789999
Q ss_pred CccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCC
Q 001201 227 RLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1124)
Q Consensus 227 ~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (1124)
+|++|++++|.+. +.+++|+.|+++.|..
T Consensus 206 ~L~~L~l~~N~~~------------------~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 206 SLQYIWLHDNPWD------------------CTCPGIRYLSEWINKH 234 (272)
T ss_dssp TCCEEECCSSCBC------------------CCTTTTHHHHHHHHHT
T ss_pred CCCEEEccCCCcc------------------ccCcHHHHHHHHHHhC
Confidence 9999999999765 2355677777776654
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=7.9e-17 Score=189.80 Aligned_cols=189 Identities=14% Similarity=0.138 Sum_probs=151.4
Q ss_pred CCCcCEEEeecCCCccCCCC-C-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEE
Q 001201 85 LKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (1124)
Q Consensus 85 ~~~lr~L~l~~n~i~~l~~~-~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~ 162 (1124)
..++++|++++|.+..+++. + .+++|++|+|++|.+....| |.++++|++|+|++|.+..+|.. ++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 34799999999999988753 3 89999999999998874333 78999999999999999887643 8999999
Q ss_pred ccCCCCCCcccccCcccCcEEEccCCCCCcc-chhhhCCCCccEEEecCCCCCCccCccccC-CCCCccEEEeecccCcc
Q 001201 163 LDRCALGDIAIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLS-GLSRLEDLYMGNTSVKW 240 (1124)
Q Consensus 163 L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~-~L~~L~~L~l~~~~i~~ 240 (1124)
+++|.+..+.. ..+++|++|++++|.+..+ |..++.+++|++|++++|. +..++...+. .+++|++|++++|.+..
T Consensus 106 L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 106 AANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99999887732 3468899999999999987 4578999999999999998 6654333354 78999999999998761
Q ss_pred ccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccc-cccccceEEEEeCCc
Q 001201 241 EFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKKLERYKIFIGDE 295 (1124)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~l~l~~~~~ 295 (1124)
+..+..+++|+.|++++|.+..+++.+ .+.+|+.++++.+.+
T Consensus 184 -------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 184 -------------VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp -------------EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC
T ss_pred -------------ccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcC
Confidence 133446889999999999998887776 667788877765543
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=1.9e-15 Score=161.68 Aligned_cols=166 Identities=20% Similarity=0.325 Sum_probs=145.7
Q ss_pred ecCCcccCCCcccCCCCcCEEEeecCCCccCCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC
Q 001201 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (1124)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~--~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l 148 (1124)
+.+......|. ....++++|++++|.+..++... ++++|++|++++|.+. .++...|.++++|++|++++|.+..+
T Consensus 21 ~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 98 (251)
T 3m19_A 21 CQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASL 98 (251)
T ss_dssp CTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred cCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCccccc
Confidence 44555555443 45678999999999999887653 8999999999999988 57777889999999999999999988
Q ss_pred C-cccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCccch-hhhCCCCccEEEecCCCCCCccCccccCC
Q 001201 149 P-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSG 224 (1124)
Q Consensus 149 p-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~ 224 (1124)
| ..+..+++|++|+|++|.+..+ ..+..+.+|++|++++|.++.+|. .++.+.+|++|++++|. +..++...+..
T Consensus 99 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 177 (251)
T 3m19_A 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDR 177 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTT
T ss_pred ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhC
Confidence 6 5689999999999999999987 457999999999999999999986 68999999999999998 88998877999
Q ss_pred CCCccEEEeecccCc
Q 001201 225 LSRLEDLYMGNTSVK 239 (1124)
Q Consensus 225 L~~L~~L~l~~~~i~ 239 (1124)
+++|++|++++|.+.
T Consensus 178 l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 178 LGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTCCEEECCSCCBC
T ss_pred CCCCCEEEeeCCcee
Confidence 999999999999876
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=3.6e-15 Score=168.19 Aligned_cols=130 Identities=20% Similarity=0.254 Sum_probs=66.0
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCc-cCC-cccCCCCCCcE-EEccC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLP-SLFHLPLNLQT-LCLDR 165 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~-~lp-~~i~~l~~Lr~-L~L~~ 165 (1124)
+.++.+++++.++|..+ .+++++|+|++|.+. .+|.++|.++++|++|+|++|.+. .+| .+|.++++|+. +.+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 34555666666666544 245566666666554 455555566666666666666553 233 23555555443 33344
Q ss_pred CCCCCc--ccccCcccCcEEEccCCCCCccch-hhhCCCCccEEEecCCCCCCccCcc
Q 001201 166 CALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPN 220 (1124)
Q Consensus 166 ~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~ 220 (1124)
|.+..+ ..+..+++|++|++++|.+..+|. .+....++.+|++.++..+..++..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~ 147 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc
Confidence 444443 344555555555555555554442 2333444445555444334444443
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=3.8e-15 Score=167.98 Aligned_cols=197 Identities=18% Similarity=0.188 Sum_probs=159.9
Q ss_pred EecCCcccCCCcccCCCCcCEEEeecCCCccCCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcE-EEeecCCCc
Q 001201 70 MLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRG-LALSNMQFL 146 (1124)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~--~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~-L~Ls~~~i~ 146 (1124)
...+.+...+|. +.++++++|++++|+|..++... ++++|++|+|++|.+...++..+|.++++++. +.+.+|.+.
T Consensus 15 ~C~~~~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 15 LCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp EEESTTCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred EecCCCCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 345556666653 46789999999999999999764 89999999999999877789899999998775 677789999
Q ss_pred cC-CcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCC-CCCccch-hhhCC-CCccEEEecCCCCCCccCcc
Q 001201 147 SL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDS-NIEQLPE-EMAQL-TQLRLFDLSGCSKLKVIPPN 220 (1124)
Q Consensus 147 ~l-p~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~-~i~~lp~-~i~~L-~~L~~L~L~~~~~l~~lp~~ 220 (1124)
.+ |..|..+++|++|++++|.+..+ ..+....++.+|++.++ .+..+|. .|..+ ..+++|++++|. ++.+|.+
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~ 172 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS 172 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT
T ss_pred ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChh
Confidence 88 56799999999999999999877 45566778889999774 7888875 46665 469999999998 9999988
Q ss_pred ccCCCCCccEEEeec-ccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccc
Q 001201 221 LLSGLSRLEDLYMGN-TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL 280 (1124)
Q Consensus 221 ~i~~L~~L~~L~l~~-~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~ 280 (1124)
+....+|++|++.+ |.+. ......++.+++|+.|++++|.+..+|.+.
T Consensus 173 -~f~~~~L~~l~l~~~n~l~-----------~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~ 221 (350)
T 4ay9_X 173 -AFNGTQLDELNLSDNNNLE-----------ELPNDVFHGASGPVILDISRTRIHSLPSYG 221 (350)
T ss_dssp -SSTTEEEEEEECTTCTTCC-----------CCCTTTTTTEECCSEEECTTSCCCCCCSSS
T ss_pred -hccccchhHHhhccCCccc-----------CCCHHHhccCcccchhhcCCCCcCccChhh
Confidence 45667899999975 4444 222345788999999999999988887653
No 89
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=3.6e-15 Score=156.82 Aligned_cols=149 Identities=26% Similarity=0.362 Sum_probs=132.9
Q ss_pred cCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCc-ccCCCCCCcEEEccCC
Q 001201 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRC 166 (1124)
Q Consensus 88 lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~ 166 (1124)
.+.++.+++.+..+|..+. ++|++|++++|.+. .++...|.++++|++|+|++|.+..+|. .|..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 5578888999999998764 89999999999988 4666778999999999999999999874 5789999999999999
Q ss_pred CCCCc--ccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCc
Q 001201 167 ALGDI--AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 167 ~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~ 239 (1124)
.++.+ ..+..+.+|++|++++|.++.+|..+..+.+|++|++++|. +..+|...+..+++|++|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99887 45789999999999999999999999999999999999998 88998777899999999999998765
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=1.3e-15 Score=182.67 Aligned_cols=175 Identities=23% Similarity=0.336 Sum_probs=156.5
Q ss_pred cCCCCcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEE
Q 001201 83 DMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (1124)
Q Consensus 83 ~~~~~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~ 162 (1124)
..+.+++.|++++|.+..++....+++|+.|+|++|.+. .++. |.++++|++|+|++|.+..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 457789999999999999986558999999999999887 4655 789999999999999999887 799999999999
Q ss_pred ccCCCCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccc
Q 001201 163 LDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (1124)
Q Consensus 163 L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~ 242 (1124)
|++|.+..+..+..+++|+.|+|++|.+..+ ..++.+.+|++|+|++|. +..++. +..+++|++|++++|.+.
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~--- 188 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS--- 188 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred ecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCC---
Confidence 9999999998899999999999999999988 579999999999999998 888876 899999999999999887
Q ss_pred ccccccCCCcChhhhcCCCCCCEEEeecCCCcccCc
Q 001201 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (1124)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 278 (1124)
.+..+..+++|+.|++++|.+...|.
T Consensus 189 ----------~l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 189 ----------DLRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp ----------BCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred ----------CChHHccCCCCCEEEccCCcCcCCcc
Confidence 23578999999999999998765543
No 91
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=4e-15 Score=155.31 Aligned_cols=148 Identities=22% Similarity=0.296 Sum_probs=123.2
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccCCC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 167 (1124)
+.++++++.+..+|..+. ++|+.|++++|.+. .++...|.++++|++|+|++|.+..+ |.+|..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567888888888887664 78899999998877 67777788899999999999998877 7788899999999999998
Q ss_pred CCCc--ccccCcccCcEEEccCCCCCcc-chhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCc
Q 001201 168 LGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 168 l~~l--~~i~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~ 239 (1124)
+..+ ..+..+.+|++|+|++|.+..+ |..|..+.+|++|+|++|. +..++.+.+..+++|++|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8877 4478888999999999888877 4578888889999998888 88888776888888888888888765
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=2.8e-15 Score=155.39 Aligned_cols=164 Identities=23% Similarity=0.357 Sum_probs=131.6
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCc-ccCCCCCCcEEEccCCC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCA 167 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~ 167 (1124)
+.++..++.+..+|... .++|++|++++|.+. .++..+|.++++|++|++++|.+..+|. .+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 46677777787787655 468899999988877 6777778889999999999998888865 46888999999999998
Q ss_pred CCCc--ccccCcccCcEEEccCCCCCccchh-hhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccccc
Q 001201 168 LGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (1124)
Q Consensus 168 l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~ 244 (1124)
+..+ ..++.+++|++|++++|.++.+|.. +..+.+|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-----
Confidence 8877 4478889999999999988888764 7889999999999987 88888776788999999999888654
Q ss_pred ccccCCCcChhhhcCCCCCCEEEeecCCC
Q 001201 245 LNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1124)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (1124)
+.+++|+.|+++.|.+
T Consensus 162 -------------~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 162 -------------CTCPGIRYLSEWINKH 177 (208)
T ss_dssp -------------CCTTTTHHHHHHHHHC
T ss_pred -------------cCCCCHHHHHHHHHhC
Confidence 2345677777776654
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=3e-15 Score=163.69 Aligned_cols=181 Identities=21% Similarity=0.243 Sum_probs=152.1
Q ss_pred eecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCcc
Q 001201 93 LHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIA 172 (1124)
Q Consensus 93 l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~ 172 (1124)
+..+.+..+.....+++|+.|++++|.+. .++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..+.
T Consensus 31 l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 106 (291)
T 1h6t_A 31 LKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS 106 (291)
T ss_dssp TTCSCTTSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG
T ss_pred hcCCCcccccchhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh
Confidence 33344444333336789999999999876 5653 6889999999999999999876 999999999999999999998
Q ss_pred cccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCc
Q 001201 173 IIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNA 252 (1124)
Q Consensus 173 ~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~ 252 (1124)
.++.+++|++|++++|.+..++ .+..+++|++|++++|. +..++. ++.+++|++|++++|.+.
T Consensus 107 ~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~------------- 169 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS------------- 169 (291)
T ss_dssp GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCC-------------
T ss_pred hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCccc-------------
Confidence 8999999999999999999985 68999999999999998 888843 899999999999999886
Q ss_pred ChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEEeCC
Q 001201 253 SLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGD 294 (1124)
Q Consensus 253 ~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~~ 294 (1124)
.+..+..+++|+.|++++|.+..++....+.+|+.+++..+.
T Consensus 170 ~~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 170 DIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred cchhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence 122388999999999999999887653366778877776544
No 94
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=5.6e-15 Score=154.18 Aligned_cols=149 Identities=17% Similarity=0.276 Sum_probs=122.4
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCc-ccCCCCCCcEEEccCCC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCA 167 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~ 167 (1124)
+++++++|.+..+|..+ .+.++.|++++|.+..-.+..+|.++++|++|+|++|.+..++. +|..+++|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 47889999998888765 35678999999988743355678889999999999999988754 78899999999999998
Q ss_pred CCCc--ccccCcccCcEEEccCCCCCcc-chhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCc
Q 001201 168 LGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 168 l~~l--~~i~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~ 239 (1124)
+..+ ..++.+.+|++|+|++|.+..+ |..|..+.+|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8876 4588889999999999988877 5678888999999998888 77775555888888888888888765
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=5.4e-16 Score=171.87 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=33.0
Q ss_pred CCcEEEeecCCCcc-CCccc--CCCCCCcEEEccCCCCCCc------ccccCcccCcEEEccCCCCCccc-hhhhCCCCc
Q 001201 134 NLRGLALSNMQFLS-LPSLF--HLPLNLQTLCLDRCALGDI------AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQL 203 (1124)
Q Consensus 134 ~Lr~L~Ls~~~i~~-lp~~i--~~l~~Lr~L~L~~~~l~~l------~~i~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L 203 (1124)
+|++|++++|.+.. .|..+ ..+++|++|+|++|.+... ..+..+++|++|++++|.+..+| ..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34444444444432 23333 4444444444444444321 11223444444444444444333 234444444
Q ss_pred cEEEecCCC
Q 001201 204 RLFDLSGCS 212 (1124)
Q Consensus 204 ~~L~L~~~~ 212 (1124)
++|++++|.
T Consensus 172 ~~L~Ls~N~ 180 (310)
T 4glp_A 172 TSLDLSDNP 180 (310)
T ss_dssp CEEECCSCT
T ss_pred CEEECCCCC
Confidence 444444443
No 96
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=4.6e-15 Score=164.44 Aligned_cols=189 Identities=18% Similarity=0.169 Sum_probs=134.2
Q ss_pred CCCcCEEEeecCCCc-cCCCC---CCCCCccEEEecCCCCCCCCChhhhcCC-----CCCcEEEeecCCCccCC-cccCC
Q 001201 85 LKNCPTIFLHDCKHW-EVPEG---LEYPQLEFFCMSPRDHSIKIPNHVFAGM-----SNLRGLALSNMQFLSLP-SLFHL 154 (1124)
Q Consensus 85 ~~~lr~L~l~~n~i~-~l~~~---~~~~~L~~L~L~~n~~~~~~~~~~f~~l-----~~Lr~L~Ls~~~i~~lp-~~i~~ 154 (1124)
..++++|++++|.+. .+|.. ..+++|++|++++|.+.. +| ..|.++ ++|++|++++|.+..+| ..++.
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS-SS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc-hh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 667888888888886 45654 367888888888888774 45 344555 78888888888888775 67888
Q ss_pred CCCCcEEEccCCCCCC----cccc--cCcccCcEEEccCCCCCccc---h-hhhCCCCccEEEecCCCCCCccC-ccccC
Q 001201 155 PLNLQTLCLDRCALGD----IAII--GNLKKLEILSLVDSNIEQLP---E-EMAQLTQLRLFDLSGCSKLKVIP-PNLLS 223 (1124)
Q Consensus 155 l~~Lr~L~L~~~~l~~----l~~i--~~L~~L~~L~Ls~~~i~~lp---~-~i~~L~~L~~L~L~~~~~l~~lp-~~~i~ 223 (1124)
+++|++|+|++|.+.. +..+ +.+++|++|++++|.++.+| . .+..+++|++|++++|. +...+ ...+.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 250 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCD 250 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhh
Confidence 8888888888888542 2333 78888888888888888543 2 34677888888888887 65543 33366
Q ss_pred CCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEE
Q 001201 224 GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKI 290 (1124)
Q Consensus 224 ~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l 290 (1124)
.+++|++|++++|.+. ..+..+. ++|+.|++++|.+..+|....+++|+.+++
T Consensus 251 ~l~~L~~L~Ls~N~l~------------~ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L 303 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK------------QVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSL 303 (312)
T ss_dssp CCTTCCEEECTTSCCS------------SCCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEEC
T ss_pred hcCCCCEEECCCCccC------------hhhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEec
Confidence 7788888888888776 1222333 678888888888877755224455555444
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=6.2e-15 Score=163.29 Aligned_cols=192 Identities=15% Similarity=0.055 Sum_probs=136.6
Q ss_pred CCcCEEEeecCCCccC-CCC---CCCCCccEEEecCCCCCCCCC---hhhhcCCCCCcEEEeecCCCccCC-cccCCCCC
Q 001201 86 KNCPTIFLHDCKHWEV-PEG---LEYPQLEFFCMSPRDHSIKIP---NHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLN 157 (1124)
Q Consensus 86 ~~lr~L~l~~n~i~~l-~~~---~~~~~L~~L~L~~n~~~~~~~---~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~ 157 (1124)
.++++|++++|.+... |.. ..+++|++|++++|.+....+ ...+..+++|++|++++|.+..+| ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 4588888888887643 333 457888888888888775433 233457888888888888888764 67888888
Q ss_pred CcEEEccCCCCCC---c---ccccCcccCcEEEccCCCCCccchh----hhCCCCccEEEecCCCCCCcc-CccccCCC-
Q 001201 158 LQTLCLDRCALGD---I---AIIGNLKKLEILSLVDSNIEQLPEE----MAQLTQLRLFDLSGCSKLKVI-PPNLLSGL- 225 (1124)
Q Consensus 158 Lr~L~L~~~~l~~---l---~~i~~L~~L~~L~Ls~~~i~~lp~~----i~~L~~L~~L~L~~~~~l~~l-p~~~i~~L- 225 (1124)
|++|+|++|.+.. + ..++.+++|++|++++|.++.+|.. ++.+.+|++|++++|. +..+ |.. ++.+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHhcc
Confidence 8888888888653 2 2346788888888888888877653 5778888888888888 6665 554 5555
Q ss_pred --CCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEEeC
Q 001201 226 --SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIG 293 (1124)
Q Consensus 226 --~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~ 293 (1124)
++|++|++++|.+.. .+..+. ++|+.|++++|.+..+|....+++|+.+++..+
T Consensus 249 ~~~~L~~L~Ls~N~l~~------------lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQ------------VPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CCTTCCCEECCSSCCCS------------CCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSST
T ss_pred CcCcCCEEECCCCCCCc------------hhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCC
Confidence 588888888888761 122222 678888888888877655335566666655433
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=1.3e-14 Score=148.66 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=119.3
Q ss_pred cCCCCcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCcc-CCcccCCCCCCcEE
Q 001201 83 DMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS-LPSLFHLPLNLQTL 161 (1124)
Q Consensus 83 ~~~~~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~-lp~~i~~l~~Lr~L 161 (1124)
..+.++++|++++|.+..++....+++|++|++++|.+. .++ .|.++++|++|++++|.+.. .|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 346678999999999988884337889999999888554 333 46788899999999998885 57788888999999
Q ss_pred EccCCCCCC--cccccCcccCcEEEccCCC-CCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccC
Q 001201 162 CLDRCALGD--IAIIGNLKKLEILSLVDSN-IEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 238 (1124)
Q Consensus 162 ~L~~~~l~~--l~~i~~L~~L~~L~Ls~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i 238 (1124)
++++|.+.. +..++.+++|++|++++|. +..+| .+..+++|++|++++|. +..++. +..+++|++|++++|.+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCccc
Confidence 999888876 3778888888888888887 88887 68888888888888887 777773 78888888888888876
Q ss_pred c
Q 001201 239 K 239 (1124)
Q Consensus 239 ~ 239 (1124)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=1.9e-15 Score=162.53 Aligned_cols=167 Identities=20% Similarity=0.199 Sum_probs=97.0
Q ss_pred CcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCC
Q 001201 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (1124)
Q Consensus 87 ~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~ 166 (1124)
++..+++.++.+..++....+++|++|++++|.+. .++ .|..+++|++|++++|.+..+|. +..+++|++|+|++|
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence 34444455555555543225566666666666554 344 24556666666666666666654 666666666666666
Q ss_pred CCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccccccc
Q 001201 167 ALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLN 246 (1124)
Q Consensus 167 ~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~ 246 (1124)
.++.+..+.. .+|++|++++|.++.+| .++.+++|++|++++|. +..++. ++.+++|++|++++|.+.
T Consensus 96 ~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~------- 163 (263)
T 1xeu_A 96 RLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEIT------- 163 (263)
T ss_dssp CCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCC-------
T ss_pred ccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCc-------
Confidence 6665544444 66666666666666654 36666666666666665 555542 566666666666666654
Q ss_pred ccCCCcChhhhcCCCCCCEEEeecCCCcc
Q 001201 247 VGRSNASLQELKLLSHLTTLEIQICDAMI 275 (1124)
Q Consensus 247 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 275 (1124)
. ...+..+++|+.|++++|.+..
T Consensus 164 ----~--~~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 164 ----N--TGGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp ----B--CTTSTTCCCCCEEEEEEEEEEC
T ss_pred ----c--hHHhccCCCCCEEeCCCCcccC
Confidence 1 1445566666666666665443
No 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=2.5e-15 Score=168.94 Aligned_cols=147 Identities=18% Similarity=0.227 Sum_probs=82.8
Q ss_pred ccEEEecCCCCCCCCChhhhcCC--CCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCC--c-ccccCcccCcEEE
Q 001201 110 LEFFCMSPRDHSIKIPNHVFAGM--SNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD--I-AIIGNLKKLEILS 184 (1124)
Q Consensus 110 L~~L~L~~n~~~~~~~~~~f~~l--~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~--l-~~i~~L~~L~~L~ 184 (1124)
++.++++++.+. +..+..+ +++++|++++|.+...+..+..+++|++|++++|.+.. + ..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 344455444332 2334444 56666666666666554455566666666666666542 3 4556666666666
Q ss_pred ccCCCCC-ccchhhhCCCCccEEEecCCCCCCc--cCccccCCCCCccEEEeecc-cCccccccccccCCCcChhhhcCC
Q 001201 185 LVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNT-SVKWEFEGLNVGRSNASLQELKLL 260 (1124)
Q Consensus 185 Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~--lp~~~i~~L~~L~~L~l~~~-~i~~~~~~~~~~~~~~~~~~l~~l 260 (1124)
+++|.+. ..|..++.+++|++|++++|..+.. ++.. +.++++|++|++++| .+.. ......+..+
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~----------~~~~~~~~~l 193 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE----------KHVQVAVAHV 193 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH----------HHHHHHHHHS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh----------HHHHHHHHhc
Confidence 6666655 4455666666666666666632442 3332 455666666666666 4430 0123345566
Q ss_pred C-CCCEEEeecC
Q 001201 261 S-HLTTLEIQIC 271 (1124)
Q Consensus 261 ~-~L~~L~l~~~ 271 (1124)
+ +|++|++++|
T Consensus 194 ~~~L~~L~l~~~ 205 (336)
T 2ast_B 194 SETITQLNLSGY 205 (336)
T ss_dssp CTTCCEEECCSC
T ss_pred ccCCCEEEeCCC
Confidence 6 6666666665
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=1e-14 Score=165.19 Aligned_cols=171 Identities=21% Similarity=0.256 Sum_probs=142.6
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhc-CCCCCcEEEeecCCCccCC-cccCCCCCCcEEEccCC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFA-GMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRC 166 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~-~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~ 166 (1124)
+.++++++.+..+|..+ .+.++.|+|++|.+. .++...|. ++++|++|+|++|.|..++ .+|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 57889999999998765 356899999999887 67777777 8999999999999999885 56999999999999999
Q ss_pred CCCCc--ccccCcccCcEEEccCCCCCcc-chhhhCCCCccEEEecCCCCCCccCcccc---CCCCCccEEEeecccCcc
Q 001201 167 ALGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLL---SGLSRLEDLYMGNTSVKW 240 (1124)
Q Consensus 167 ~l~~l--~~i~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i---~~L~~L~~L~l~~~~i~~ 240 (1124)
.+..+ ..|..+.+|++|+|++|.|..+ |..|..+.+|++|+|++|. +..+|...+ ..+.+|++|++++|.+.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~- 176 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK- 176 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence 99877 5688999999999999999987 5679999999999999998 989998765 57899999999999887
Q ss_pred ccccccccCCCcChhhhcCCCC--CCEEEeecCCC
Q 001201 241 EFEGLNVGRSNASLQELKLLSH--LTTLEIQICDA 273 (1124)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~ 273 (1124)
......+..++. |+.|++++|..
T Consensus 177 ----------~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 ----------KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ----------CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ----------ccCHHHhhhccHhhcceEEecCCCc
Confidence 334456777766 47788888763
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=1.3e-14 Score=148.63 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=129.7
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCC--cccccCcccCcEE
Q 001201 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEIL 183 (1124)
Q Consensus 106 ~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~--l~~i~~L~~L~~L 183 (1124)
.+++|+.|++++|.+. .++ . +..+++|++|++++|.+..++ .+..+++|++|++++|.+.. +..++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 5788999999999887 677 2 688999999999999887765 78999999999999999986 4889999999999
Q ss_pred EccCCCCCc-cchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCC
Q 001201 184 SLVDSNIEQ-LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSH 262 (1124)
Q Consensus 184 ~Ls~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~ 262 (1124)
++++|.+.. .|..++.+++|++|++++|..+..+|. +..+++|++|++++|.+. .+..+..+++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~-------------~~~~l~~l~~ 182 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH-------------DYRGIEDFPK 182 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC-------------CCTTGGGCSS
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc-------------ChHHhccCCC
Confidence 999999985 678899999999999999976888874 899999999999999876 2337888999
Q ss_pred CCEEEeecCCCc
Q 001201 263 LTTLEIQICDAM 274 (1124)
Q Consensus 263 L~~L~l~~~~~~ 274 (1124)
|+.|++++|.+.
T Consensus 183 L~~L~l~~N~i~ 194 (197)
T 4ezg_A 183 LNQLYAFSQTIG 194 (197)
T ss_dssp CCEEEECBC---
T ss_pred CCEEEeeCcccC
Confidence 999999999864
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=2.4e-14 Score=153.78 Aligned_cols=149 Identities=18% Similarity=0.247 Sum_probs=134.1
Q ss_pred ccCCCCcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEE
Q 001201 82 ADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTL 161 (1124)
Q Consensus 82 ~~~~~~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L 161 (1124)
...+.++++|++++|.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..+|.... ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccCCcCcccc--CcccEE
Confidence 3457899999999999999985448999999999999887 5665 7999999999999999999876443 999999
Q ss_pred EccCCCCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCc
Q 001201 162 CLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 162 ~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~ 239 (1124)
+|++|.++.+..++.+++|++|++++|.++.+| .++.+.+|++|++++|. +..++. +..+++|++|++++|.+.
T Consensus 112 ~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGG--LTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTT--STTCCCCCEEEEEEEEEE
T ss_pred EccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHH--hccCCCCCEEeCCCCccc
Confidence 999999999988999999999999999999997 79999999999999998 888843 899999999999999876
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=1e-15 Score=175.52 Aligned_cols=179 Identities=17% Similarity=0.177 Sum_probs=82.3
Q ss_pred CCcCEEEeecCCCcc-----CCCCC-CCCCccEEEecCCCCC---CCCChhh------hcCCCCCcEEEeecCCCcc---
Q 001201 86 KNCPTIFLHDCKHWE-----VPEGL-EYPQLEFFCMSPRDHS---IKIPNHV------FAGMSNLRGLALSNMQFLS--- 147 (1124)
Q Consensus 86 ~~lr~L~l~~n~i~~-----l~~~~-~~~~L~~L~L~~n~~~---~~~~~~~------f~~l~~Lr~L~Ls~~~i~~--- 147 (1124)
+++++|++++|.+.. ++..+ .+++|++|+|++|.+. ..+|..+ |..+++|++|+|++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 445555555555432 11112 4555555555554221 1223222 3455555555555555543
Q ss_pred --CCcccCCCCCCcEEEccCCCCCCc------ccccCc---------ccCcEEEccCCCCC--ccc---hhhhCCCCccE
Q 001201 148 --LPSLFHLPLNLQTLCLDRCALGDI------AIIGNL---------KKLEILSLVDSNIE--QLP---EEMAQLTQLRL 205 (1124)
Q Consensus 148 --lp~~i~~l~~Lr~L~L~~~~l~~l------~~i~~L---------~~L~~L~Ls~~~i~--~lp---~~i~~L~~L~~ 205 (1124)
+|..+..+++|++|+|++|.+... ..+..+ ++|++|++++|.+. .+| ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 444555555555555555554311 122222 55555555555553 233 34445555555
Q ss_pred EEecCCCCCC------ccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCC
Q 001201 206 FDLSGCSKLK------VIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1124)
Q Consensus 206 L~L~~~~~l~------~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (1124)
|++++|. +. -+|.. +..+++|++|++++|.+...+. ...+..+..+++|+.|++++|.+
T Consensus 192 L~L~~n~-l~~~g~~~l~~~~-l~~~~~L~~L~Ls~n~l~~~g~-------~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 192 VKMVQNG-IRPEGIEHLLLEG-LAYCQELKVLDLQDNTFTHLGS-------SALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp EECCSSC-CCHHHHHHHHHTT-GGGCTTCCEEECCSSCCHHHHH-------HHHHHHGGGCTTCCEEECTTCCC
T ss_pred EECcCCC-CCHhHHHHHHHHH-hhcCCCccEEECcCCCCCcHHH-------HHHHHHHccCCCcCEEECCCCCC
Confidence 5555554 43 11112 4455555555555555431000 11233445555555555555543
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=3.4e-14 Score=147.16 Aligned_cols=157 Identities=21% Similarity=0.292 Sum_probs=134.8
Q ss_pred CCcccCCCcccCCCCcCEEEeecCCCccCCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCc
Q 001201 73 NDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS 150 (1124)
Q Consensus 73 ~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~--~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~ 150 (1124)
+.+....+ .....++++|++++|.+..++... .+++|++|++++|.+. .++..+|.++++|++|++++|.+..+|.
T Consensus 16 ~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 93 (208)
T 2o6s_A 16 SQGRTSVP-TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPN 93 (208)
T ss_dssp SSCCSSCC-SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCccCCC-CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCH
Confidence 33444444 345678999999999999888754 8999999999999887 7888889999999999999999998865
Q ss_pred -ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCccchh-hhCCCCccEEEecCCCCCCccCccccCCCC
Q 001201 151 -LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLS 226 (1124)
Q Consensus 151 -~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~ 226 (1124)
.+..+++|++|++++|.+..+ ..+.++.+|++|++++|.++.+|.. +..+.+|++|++++|. + .+.+.
T Consensus 94 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-~-------~~~~~ 165 (208)
T 2o6s_A 94 GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-W-------DCTCP 165 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-B-------CCCTT
T ss_pred hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC-e-------ecCCC
Confidence 479999999999999999977 4589999999999999999999865 7999999999999996 2 35677
Q ss_pred CccEEEeecccCc
Q 001201 227 RLEDLYMGNTSVK 239 (1124)
Q Consensus 227 ~L~~L~l~~~~i~ 239 (1124)
+|++|+++.|.+.
T Consensus 166 ~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 166 GIRYLSEWINKHS 178 (208)
T ss_dssp TTHHHHHHHHHCT
T ss_pred CHHHHHHHHHhCC
Confidence 8999999888876
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=5.2e-14 Score=146.81 Aligned_cols=147 Identities=16% Similarity=0.264 Sum_probs=127.6
Q ss_pred cEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCc-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccC
Q 001201 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVD 187 (1124)
Q Consensus 111 ~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~ 187 (1124)
+.++++++.+. .+|..+. ++|+.|++++|.|..+|. .|..+++|++|+|++|.+..+ ..|.++.+|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 57888888776 6886553 689999999999998865 799999999999999999876 7899999999999999
Q ss_pred CCCCccchh-hhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEE
Q 001201 188 SNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTL 266 (1124)
Q Consensus 188 ~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L 266 (1124)
|.++.+|.. |..+.+|++|+|++|. +..++...+..+++|++|++++|.+. ......+..+++|+.|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQ-----------TIAKGTFSPLRAIQTM 157 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-----------CCCTTTTTTCTTCCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCC-----------EECHHHHhCCCCCCEE
Confidence 999999865 6899999999999998 88887777999999999999999987 3344568889999999
Q ss_pred EeecCCC
Q 001201 267 EIQICDA 273 (1124)
Q Consensus 267 ~l~~~~~ 273 (1124)
++++|..
T Consensus 158 ~L~~N~~ 164 (220)
T 2v9t_B 158 HLAQNPF 164 (220)
T ss_dssp ECCSSCE
T ss_pred EeCCCCc
Confidence 9998874
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=9.1e-14 Score=164.55 Aligned_cols=173 Identities=16% Similarity=0.196 Sum_probs=128.8
Q ss_pred CcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCC
Q 001201 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (1124)
Q Consensus 87 ~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~ 166 (1124)
+++.|++++|.+..+|..+ +++|++|+|++|.+. .+| ..+++|++|++++|.+..+|. +.. +|++|+|++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 6888888888888888765 378888888888877 677 346788888888888888887 655 8888888888
Q ss_pred CCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccccccc
Q 001201 167 ALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLN 246 (1124)
Q Consensus 167 ~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~ 246 (1124)
.++.++. .+.+|++|++++|.++.+|. .+++|++|++++|. +..+|. +. ++|++|++++|.+..
T Consensus 131 ~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~------ 194 (571)
T 3cvr_A 131 QLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLES------ 194 (571)
T ss_dssp CCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSS------
T ss_pred cCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCc------
Confidence 8887754 67888888888888888886 57888888888887 777886 55 788888888887761
Q ss_pred ccCCCcChhhhcC-----CCCCCEEEeecCCCcccCccc-cccccceEEEE
Q 001201 247 VGRSNASLQELKL-----LSHLTTLEIQICDAMILPKGL-FSKKLERYKIF 291 (1124)
Q Consensus 247 ~~~~~~~~~~l~~-----l~~L~~L~l~~~~~~~l~~~~-~~~~L~~l~l~ 291 (1124)
.+. +.. ...|+.|++++|.+..+|..+ .+.+|+.+++.
T Consensus 195 ------lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 195 ------LPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238 (571)
T ss_dssp ------CCC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECC
T ss_pred ------hhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEee
Confidence 111 222 122388888888888777765 45555555444
No 108
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=2.9e-15 Score=168.47 Aligned_cols=173 Identities=15% Similarity=0.137 Sum_probs=114.6
Q ss_pred CcCEEEeecCCCccCCCCC-CC--CCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCcc--CCcccCCCCCCcEE
Q 001201 87 NCPTIFLHDCKHWEVPEGL-EY--PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS--LPSLFHLPLNLQTL 161 (1124)
Q Consensus 87 ~lr~L~l~~n~i~~l~~~~-~~--~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~--lp~~i~~l~~Lr~L 161 (1124)
.+++++++++.+. +... .+ ++++.|++++|.+....+ .+ .++++|++|++++|.+.. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLA-EH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCC-SC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccch-hh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777776554 1111 33 677888887777664333 33 467788888888887763 66677778888888
Q ss_pred EccCCCCCCc--ccccCcccCcEEEccCC-CCC--ccchhhhCCCCccEEEecCCCCCCc--cCccccCCCC-CccEEEe
Q 001201 162 CLDRCALGDI--AIIGNLKKLEILSLVDS-NIE--QLPEEMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLS-RLEDLYM 233 (1124)
Q Consensus 162 ~L~~~~l~~l--~~i~~L~~L~~L~Ls~~-~i~--~lp~~i~~L~~L~~L~L~~~~~l~~--lp~~~i~~L~-~L~~L~l 233 (1124)
+|++|.+... ..++.+++|++|++++| .++ .+|..+..+++|++|++++|..+.. ++.. +..++ +|++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEEC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEe
Confidence 8888876632 66777888888888887 566 3666677788888888888732654 3433 66777 8888888
Q ss_pred ecccCccccccccccCCCcChhhhcCCCCCCEEEeecCC
Q 001201 234 GNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (1124)
Q Consensus 234 ~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (1124)
++|.+... ....+..++.+++|+.|++++|.
T Consensus 203 ~~~~~~~~--------~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 203 SGYRKNLQ--------KSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp CSCGGGSC--------HHHHHHHHHHCTTCSEEECTTCT
T ss_pred CCCcccCC--------HHHHHHHHhhCCCCCEEeCCCCC
Confidence 87742100 01123455677788888887776
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.52 E-value=3.2e-14 Score=160.99 Aligned_cols=168 Identities=23% Similarity=0.281 Sum_probs=144.0
Q ss_pred EEecCCcccCCCcccCCCCcCEEEeecCCCccCCCCC---CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCC
Q 001201 69 FMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL---EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQF 145 (1124)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~---~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i 145 (1124)
..+.+......|. .....+++|++++|.+..++... ++++|++|+|++|.+. .++...|.++++|++|+|++|.+
T Consensus 23 l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 23 LSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp EECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcC
Confidence 3345555555553 46778999999999999888754 7899999999999987 68878899999999999999999
Q ss_pred ccCCc-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCccchhh----hCCCCccEEEecCCCCCCccC
Q 001201 146 LSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEEM----AQLTQLRLFDLSGCSKLKVIP 218 (1124)
Q Consensus 146 ~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~~i----~~L~~L~~L~L~~~~~l~~lp 218 (1124)
..+|. .|..+++|++|+|++|.|..+ ..|..+.+|++|+|++|.+..+|..+ ..+.+|++|+|++|. +..+|
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~ 179 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLP 179 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccC
Confidence 98864 689999999999999999876 68999999999999999999999765 679999999999998 99999
Q ss_pred ccccCCCCC--ccEEEeecccCc
Q 001201 219 PNLLSGLSR--LEDLYMGNTSVK 239 (1124)
Q Consensus 219 ~~~i~~L~~--L~~L~l~~~~i~ 239 (1124)
...+..+.. |+.|++.+|.+.
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHHhhhccHhhcceEEecCCCcc
Confidence 776788877 488999999875
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=2.1e-14 Score=172.23 Aligned_cols=184 Identities=21% Similarity=0.223 Sum_probs=153.0
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCAL 168 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l 168 (1124)
..+.+..+.+..+.....+++|+.|++++|.+. .++. |..+++|+.|+|++|.+..+|. +..+++|++|+|++|.+
T Consensus 24 ~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred HHHhccCCCcccccchhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC
Confidence 334444445554444446889999999999876 5653 6899999999999999999876 99999999999999999
Q ss_pred CCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccccccccc
Q 001201 169 GDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVG 248 (1124)
Q Consensus 169 ~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~ 248 (1124)
..+..++.+++|++|+|++|.+..+| .+..+.+|++|+|++|. +..++. ++.+++|++|++++|.+.
T Consensus 100 ~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~--------- 166 (605)
T 1m9s_A 100 KDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS--------- 166 (605)
T ss_dssp CCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCC---------
T ss_pred CCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCC---------
Confidence 99999999999999999999999886 59999999999999998 888843 899999999999999886
Q ss_pred CCCcChhhhcCCCCCCEEEeecCCCcccCccccccccceEEEEeC
Q 001201 249 RSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIG 293 (1124)
Q Consensus 249 ~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~l~l~~~ 293 (1124)
. +..+..+++|+.|++++|.+..++....+.+|+.|.+..+
T Consensus 167 --~--~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 167 --D--IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp --C--CGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred --C--chhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCC
Confidence 1 2228899999999999999988754336677777766543
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=9.5e-14 Score=144.79 Aligned_cols=147 Identities=18% Similarity=0.257 Sum_probs=128.0
Q ss_pred cEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC--cccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEcc
Q 001201 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP--SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLV 186 (1124)
Q Consensus 111 ~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp--~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls 186 (1124)
+++++++|.+. .+|..+ ...+++|+|++|.+..++ ..|..+++|++|+|++|.++.+ ..|.++.+|++|+|+
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 58999999877 688655 345789999999999884 3489999999999999999977 479999999999999
Q ss_pred CCCCCccch-hhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCE
Q 001201 187 DSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (1124)
Q Consensus 187 ~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (1124)
+|.++.+|. .|+.+.+|++|++++|. +..++...+..+.+|++|++++|.+. ...+..+..+++|+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT-----------TVAPGAFDTLHSLST 157 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCC-----------CBCTTTTTTCTTCCE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCC-----------EECHHHhcCCCCCCE
Confidence 999998875 58999999999999998 88886666999999999999999987 444677889999999
Q ss_pred EEeecCCC
Q 001201 266 LEIQICDA 273 (1124)
Q Consensus 266 L~l~~~~~ 273 (1124)
|++++|.+
T Consensus 158 L~L~~N~l 165 (220)
T 2v70_A 158 LNLLANPF 165 (220)
T ss_dssp EECCSCCE
T ss_pred EEecCcCC
Confidence 99999874
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=1.2e-13 Score=144.98 Aligned_cols=148 Identities=22% Similarity=0.317 Sum_probs=128.7
Q ss_pred ccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEcc
Q 001201 110 LEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLV 186 (1124)
Q Consensus 110 L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls 186 (1124)
.+.++++++.+. .+|..+ .++|++|+|++|.+..+ |..|..+++|++|+|++|.+..+ ..+..+.+|++|+|+
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 456888888766 788655 38899999999999988 67899999999999999999887 557999999999999
Q ss_pred CCCCCccchh-hhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCE
Q 001201 187 DSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (1124)
Q Consensus 187 ~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (1124)
+|.++.+|.. +..+.+|++|++++|. +..+|.. +..+.+|++|++++|.+. ......+..+++|+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLK-----------SIPHGAFDRLSSLTH 163 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCC-----------CCCTTTTTTCTTCCE
T ss_pred CCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCC-----------ccCHHHHhCCCCCCE
Confidence 9999999764 7899999999999998 9999987 799999999999999887 333456888999999
Q ss_pred EEeecCCCc
Q 001201 266 LEIQICDAM 274 (1124)
Q Consensus 266 L~l~~~~~~ 274 (1124)
|++++|.+.
T Consensus 164 L~l~~N~~~ 172 (229)
T 3e6j_A 164 AYLFGNPWD 172 (229)
T ss_dssp EECTTSCBC
T ss_pred EEeeCCCcc
Confidence 999998754
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.49 E-value=6.3e-15 Score=167.14 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=15.7
Q ss_pred ccEEEecCCCCCCCCCh----hhhcCCC-CCcEEEeecCCCc
Q 001201 110 LEFFCMSPRDHSIKIPN----HVFAGMS-NLRGLALSNMQFL 146 (1124)
Q Consensus 110 L~~L~L~~n~~~~~~~~----~~f~~l~-~Lr~L~Ls~~~i~ 146 (1124)
|++|++++|.+. ..+. ..|.+++ +|++|+|++|.+.
T Consensus 24 L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 64 (362)
T 3goz_A 24 VTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLG 64 (362)
T ss_dssp CCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGG
T ss_pred ceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCC
Confidence 444444444433 2222 3334444 4444444444444
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=4.2e-13 Score=158.89 Aligned_cols=174 Identities=19% Similarity=0.219 Sum_probs=145.5
Q ss_pred EEecCCcccCCCcccCCCCcCEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC
Q 001201 69 FMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (1124)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~lr~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l 148 (1124)
..+.+......+. ...+++++|++++|.+..+| ..+++|++|++++|.+.. +|. |.+ +|++|++++|.+..+
T Consensus 64 L~Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls~N~l~~l 135 (571)
T 3cvr_A 64 LQLNRLNLSSLPD-NLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDVDNNQLTML 135 (571)
T ss_dssp EECCSSCCSCCCS-CCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEECCSSCCSCC
T ss_pred EEeCCCCCCccCH-hHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch--hhc--CCCEEECCCCcCCCC
Confidence 3455555555443 34688999999999999999 457999999999999884 887 444 999999999999999
Q ss_pred CcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCc
Q 001201 149 PSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL 228 (1124)
Q Consensus 149 p~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L 228 (1124)
|. .+++|++|+|++|.++.+.. .+++|++|++++|.++.+|. |. .+|++|++++|. +..+|. +.. +|
T Consensus 136 p~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L 202 (571)
T 3cvr_A 136 PE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RN 202 (571)
T ss_dssp CC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC-----
T ss_pred CC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hh
Confidence 87 68999999999999988855 68899999999999999998 76 999999999998 999997 444 77
Q ss_pred -------cEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcc
Q 001201 229 -------EDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMI 275 (1124)
Q Consensus 229 -------~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 275 (1124)
++|++++|.+. ..+..+..+++|+.|++++|.+..
T Consensus 203 ~~~~~~L~~L~Ls~N~l~------------~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 203 HHSEETEIFFRCRENRIT------------HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp -----CCEEEECCSSCCC------------CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred hcccccceEEecCCCcce------------ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 99999999886 345667789999999999998743
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=1.3e-13 Score=137.43 Aligned_cols=135 Identities=29% Similarity=0.269 Sum_probs=92.7
Q ss_pred CCCCcEEEeecCCCc--cCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCc-cchhhhCCCCccEEEe
Q 001201 132 MSNLRGLALSNMQFL--SLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQ-LPEEMAQLTQLRLFDL 208 (1124)
Q Consensus 132 l~~Lr~L~Ls~~~i~--~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~-lp~~i~~L~~L~~L~L 208 (1124)
.++|++|++++|.+. .+|..+..+++|++|++++|.+..+..++.+++|++|++++|.+.. +|..++++++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 356777777777776 6666667777777777777776666667777777777777777776 5666666777777777
Q ss_pred cCCCCCCccCc-cccCCCCCccEEEeecccCccccccccccCCCcCh---hhhcCCCCCCEEEeecCCCcccCc
Q 001201 209 SGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASL---QELKLLSHLTTLEIQICDAMILPK 278 (1124)
Q Consensus 209 ~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~l~~ 278 (1124)
++|. +..+|. ..++.+++|++|++++|.+. .... ..+..+++|+.|+++.|....+|.
T Consensus 103 s~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~-----------~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 103 SGNK-LKDISTLEPLKKLECLKSLDLFNCEVT-----------NLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp BSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG-----------TSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred cCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc-----------chHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 7776 666652 23677777777777777665 1111 356777777777777777665554
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=1.8e-14 Score=165.18 Aligned_cols=119 Identities=20% Similarity=0.204 Sum_probs=57.5
Q ss_pred ccCCcccCCCCCCcEEEccCCCCCCc------ccccCcccCcEEEccCCCCC----ccchhh-------hCCCCccEEEe
Q 001201 146 LSLPSLFHLPLNLQTLCLDRCALGDI------AIIGNLKKLEILSLVDSNIE----QLPEEM-------AQLTQLRLFDL 208 (1124)
Q Consensus 146 ~~lp~~i~~l~~Lr~L~L~~~~l~~l------~~i~~L~~L~~L~Ls~~~i~----~lp~~i-------~~L~~L~~L~L 208 (1124)
..++..+..+++|++|+|++|.+... ..+..+++|++|+|++|.+. .+|.++ ..+++|++|+|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 33444444444555555555544321 22444555555555554332 223332 45566666666
Q ss_pred cCCCCCCc-----cCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCC---------CCCCEEEeecCCC
Q 001201 209 SGCSKLKV-----IPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLL---------SHLTTLEIQICDA 273 (1124)
Q Consensus 209 ~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l---------~~L~~L~l~~~~~ 273 (1124)
++|. +.. +|.. +..+++|++|++++|.+...+. ......+..+ ++|++|++++|.+
T Consensus 102 s~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~-------~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 102 SDNA-FGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAG-------AKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp CSCC-CCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHH-------HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred CCCc-CCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHH-------HHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 6665 433 3333 4556666666666665531100 0111223333 7788888887765
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=3.2e-13 Score=134.48 Aligned_cols=130 Identities=23% Similarity=0.298 Sum_probs=70.8
Q ss_pred CCcCEEEeecCCCc--cCCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCcc-CCcccCCCCCCcEE
Q 001201 86 KNCPTIFLHDCKHW--EVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS-LPSLFHLPLNLQTL 161 (1124)
Q Consensus 86 ~~lr~L~l~~n~i~--~l~~~~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~-lp~~i~~l~~Lr~L 161 (1124)
.++++|++++|.+. .+|..+ .+++|++|++++|.+. .+ ..|..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 45666666666665 555543 5555666666555544 22 334555555666666555554 44444455555555
Q ss_pred EccCCCCCCc---ccccCcccCcEEEccCCCCCccch----hhhCCCCccEEEecCCCCCCccCc
Q 001201 162 CLDRCALGDI---AIIGNLKKLEILSLVDSNIEQLPE----EMAQLTQLRLFDLSGCSKLKVIPP 219 (1124)
Q Consensus 162 ~L~~~~l~~l---~~i~~L~~L~~L~Ls~~~i~~lp~----~i~~L~~L~~L~L~~~~~l~~lp~ 219 (1124)
++++|.+..+ ..++.+++|++|++++|.+..+|. .+..+++|++|++++|. +..+|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 5555555543 345555555555555555555543 45555555555555554 444443
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=1.1e-15 Score=182.23 Aligned_cols=189 Identities=16% Similarity=0.132 Sum_probs=148.6
Q ss_pred CCCcCEEEeecCCCccCCCCC-CCCCccEEEecCCC-------------CCCCCChhhhcCCCCCcEEE-eecCCCccCC
Q 001201 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRD-------------HSIKIPNHVFAGMSNLRGLA-LSNMQFLSLP 149 (1124)
Q Consensus 85 ~~~lr~L~l~~n~i~~l~~~~-~~~~L~~L~L~~n~-------------~~~~~~~~~f~~l~~Lr~L~-Ls~~~i~~lp 149 (1124)
.+.+++|++++|.+..+|..+ .+++|+.|++++|. .. ..++..++++++|+.|+ ++.|.+..++
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~-~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc-cCCHHHHHHHHhcccCcchhhcccchhh
Confidence 456778888888888888777 78888888886653 22 34445567788888888 5555433332
Q ss_pred c------ccCC--CCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccc
Q 001201 150 S------LFHL--PLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNL 221 (1124)
Q Consensus 150 ~------~i~~--l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~ 221 (1124)
. .+.. ...|++|+|++|.++.++.++.+++|++|+|++|.++.+|..++.+++|++|+|++|. ++.+| .
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~- 503 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G- 503 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-
T ss_pred hhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-
Confidence 1 1111 1259999999999998866999999999999999999999999999999999999998 88898 4
Q ss_pred cCCCCCccEEEeecccCccccccccccCCCcC-hhhhcCCCCCCEEEeecCCCcccCccc-----cccccceE
Q 001201 222 LSGLSRLEDLYMGNTSVKWEFEGLNVGRSNAS-LQELKLLSHLTTLEIQICDAMILPKGL-----FSKKLERY 288 (1124)
Q Consensus 222 i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~l~~~~-----~~~~L~~l 288 (1124)
++++++|++|++++|.+. ... +..++.+++|+.|++++|.+...++.. .+++|+.|
T Consensus 504 l~~l~~L~~L~Ls~N~l~-----------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQ-----------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp GTTCSSCCEEECCSSCCC-----------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred cCCCCCCcEEECCCCCCC-----------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 899999999999999987 333 778999999999999999988877654 24555554
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=4.2e-13 Score=130.54 Aligned_cols=126 Identities=29% Similarity=0.285 Sum_probs=88.3
Q ss_pred CCCCcEEEeecCCCc--cCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCc-cchhhhCCCCccEEEe
Q 001201 132 MSNLRGLALSNMQFL--SLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQ-LPEEMAQLTQLRLFDL 208 (1124)
Q Consensus 132 l~~Lr~L~Ls~~~i~--~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~-lp~~i~~L~~L~~L~L 208 (1124)
.++|+.|++++|.+. .+|..++.+++|++|++++|.+..+..++.+++|++|++++|.+.. +|..++.+++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 356777777777776 6677777777777777777777766667777777777777777776 6666677777777777
Q ss_pred cCCCCCCccCc-cccCCCCCccEEEeecccCccccccccccCCCcCh---hhhcCCCCCCEEEee
Q 001201 209 SGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASL---QELKLLSHLTTLEIQ 269 (1124)
Q Consensus 209 ~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~---~~l~~l~~L~~L~l~ 269 (1124)
++|. +..+|. ..++.+++|++|++++|.+. .... ..++.+++|+.|+++
T Consensus 96 s~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~-----------~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNK-IKDLSTIEPLKKLENLKSLDLFNCEVT-----------NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSC-CCSHHHHGGGGGCTTCCEEECTTCGGG-----------GSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCc-CCChHHHHHHhhCCCCCEEeCcCCccc-----------chHHHHHHHHHHCCCcccccCC
Confidence 7777 666541 22677777777777777665 1111 356777777777654
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.40 E-value=1.1e-13 Score=156.79 Aligned_cols=156 Identities=13% Similarity=0.156 Sum_probs=117.9
Q ss_pred EEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC-----cccCCCC-CCcEEEccCCCCCCc--ccccCc-----cc
Q 001201 113 FCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-----SLFHLPL-NLQTLCLDRCALGDI--AIIGNL-----KK 179 (1124)
Q Consensus 113 L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp-----~~i~~l~-~Lr~L~L~~~~l~~l--~~i~~L-----~~ 179 (1124)
+.++.|.+...+| .++...++|++|+|++|.+...+ ..+..++ +|++|+|++|.+... ..+..+ .+
T Consensus 3 ~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 5677887775444 55566677999999999999876 5788888 999999999998754 556654 99
Q ss_pred CcEEEccCCCCCccc-hh----hhCC-CCccEEEecCCCCCCccCcccc----CC-CCCccEEEeecccCcccccccccc
Q 001201 180 LEILSLVDSNIEQLP-EE----MAQL-TQLRLFDLSGCSKLKVIPPNLL----SG-LSRLEDLYMGNTSVKWEFEGLNVG 248 (1124)
Q Consensus 180 L~~L~Ls~~~i~~lp-~~----i~~L-~~L~~L~L~~~~~l~~lp~~~i----~~-L~~L~~L~l~~~~i~~~~~~~~~~ 248 (1124)
|++|++++|.+...+ .. +..+ ++|++|++++|. +...+...+ .. .++|++|++++|.+...+.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~----- 155 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS----- 155 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH-----
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH-----
Confidence 999999999998654 33 5555 899999999998 877765433 34 3699999999998872111
Q ss_pred CCCcChhhhcCCC-CCCEEEeecCCCcccC
Q 001201 249 RSNASLQELKLLS-HLTTLEIQICDAMILP 277 (1124)
Q Consensus 249 ~~~~~~~~l~~l~-~L~~L~l~~~~~~~l~ 277 (1124)
......+..++ +|++|++++|.+....
T Consensus 156 --~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 156 --DELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp --HHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred --HHHHHHHhcCCccccEeeecCCCCchhh
Confidence 12234456666 8999999999875443
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.39 E-value=1.2e-12 Score=133.09 Aligned_cols=123 Identities=22% Similarity=0.337 Sum_probs=82.2
Q ss_pred EEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCC
Q 001201 112 FFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSN 189 (1124)
Q Consensus 112 ~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~ 189 (1124)
+++++++.+. .+|..++ ++|++|++++|.+..+|..|..+++|++|+|++|.|+.+ ..|.++.+|++|+|++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC---TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4444444443 4444332 356666666666666666666677777777777776655 456677777777777777
Q ss_pred CCccch-hhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCc
Q 001201 190 IEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 190 i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~ 239 (1124)
++.+|. .|+.+.+|++|+|++|. +..+|.+.+..+++|++|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 776653 57777777777777777 77777766777777778877777654
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=3.8e-13 Score=130.86 Aligned_cols=102 Identities=22% Similarity=0.285 Sum_probs=48.6
Q ss_pred cCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCC-c-ccccCcccCcEEEccCCCCCccc--hhhhCCCCccE
Q 001201 130 AGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD-I-AIIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRL 205 (1124)
Q Consensus 130 ~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~-l-~~i~~L~~L~~L~Ls~~~i~~lp--~~i~~L~~L~~ 205 (1124)
..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. + ..++.+++|++|++++|.++.+| ..++.+++|++
T Consensus 39 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 4444444444444444444 344444555555555554443 2 33334455555555555555443 44555555555
Q ss_pred EEecCCCCCCccCc---cccCCCCCccEEEe
Q 001201 206 FDLSGCSKLKVIPP---NLLSGLSRLEDLYM 233 (1124)
Q Consensus 206 L~L~~~~~l~~lp~---~~i~~L~~L~~L~l 233 (1124)
|++++|. +..+|. ..++.+++|++|++
T Consensus 118 L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 118 LDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred EeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 5555554 444443 23445555555543
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=1e-12 Score=161.93 Aligned_cols=151 Identities=22% Similarity=0.270 Sum_probs=94.9
Q ss_pred CCCcCEEEeecCCCccCCCCC-CCCCccEEEe-----cCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCC
Q 001201 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCM-----SPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNL 158 (1124)
Q Consensus 85 ~~~lr~L~l~~n~i~~l~~~~-~~~~L~~L~L-----~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~L 158 (1124)
..++++|++.+|.+...+... ....|+.+.+ ..|.+ .++...|..+..|++|+|++|.+..+|..+..+++|
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 345888899888887765543 3333333332 22322 255667888999999999999998888888889999
Q ss_pred cEEEccCCCCCCc-ccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeeccc
Q 001201 159 QTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (1124)
Q Consensus 159 r~L~L~~~~l~~l-~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 237 (1124)
++|+|++|.|..+ ..|++|.+|++|+|++|.|+.+|..|++|.+|++|+|++|. +..+|.. |++|++|++|++++|.
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCc
Confidence 9999999988877 77889999999999999988889889999999999999987 8888887 8889999999998888
Q ss_pred Cc
Q 001201 238 VK 239 (1124)
Q Consensus 238 i~ 239 (1124)
+.
T Consensus 328 l~ 329 (727)
T 4b8c_D 328 LE 329 (727)
T ss_dssp CC
T ss_pred cC
Confidence 76
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=3.3e-12 Score=129.92 Aligned_cols=122 Identities=20% Similarity=0.326 Sum_probs=61.8
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCCh-hhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccCC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPN-HVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRC 166 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~-~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~ 166 (1124)
++++++++.+.++|..+. .+|++|++++|.+. .++. .+|.++++|++|+|++|.+..+ |..|..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 456666666666665442 25566666665554 2332 2455555555555555555544 445555555555555555
Q ss_pred CCCCc--ccccCcccCcEEEccCCCCCcc-chhhhCCCCccEEEecCCC
Q 001201 167 ALGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCS 212 (1124)
Q Consensus 167 ~l~~l--~~i~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~ 212 (1124)
.+..+ ..+.++++|++|++++|.++.+ |..++.+.+|++|++++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 55443 2344444444444444444433 3334444444444444443
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=3.9e-12 Score=129.41 Aligned_cols=123 Identities=20% Similarity=0.328 Sum_probs=62.9
Q ss_pred cEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCc-c--cccCcccCcEEEccCCCCCcc-chhhhCCCCccEEEecCC
Q 001201 136 RGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-A--IIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGC 211 (1124)
Q Consensus 136 r~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~--~i~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~ 211 (1124)
++++++++.+..+|..+.. +|++|++++|.+..+ . .++.+++|++|+|++|.++.+ |..|+.+.+|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4455555555555543322 555555555555444 1 245555555555555555544 344555555555555555
Q ss_pred CCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCC
Q 001201 212 SKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (1124)
Q Consensus 212 ~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (1124)
. +..++...++++++|++|++++|.+. ...+..+..+++|+.|++++|.
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 K-IKEISNKMFLGLHQLKTLNLYDNQIS-----------CVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp C-CCEECSSSSTTCTTCCEEECCSSCCC-----------EECTTSSTTCTTCCEEECTTCC
T ss_pred c-CCccCHHHhcCCCCCCEEECCCCcCC-----------eeCHHHhhcCCCCCEEEeCCCC
Confidence 5 55554444555555555555555544 2223345555555555555554
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=1.3e-12 Score=130.94 Aligned_cols=134 Identities=16% Similarity=0.187 Sum_probs=73.9
Q ss_pred cCCCCCcEEEeecCCCccCCcccCCCC-CCcEEEccCCCCCCcccccCcccCcEEEccCCCCCccchhh-hCCCCccEEE
Q 001201 130 AGMSNLRGLALSNMQFLSLPSLFHLPL-NLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEM-AQLTQLRLFD 207 (1124)
Q Consensus 130 ~~l~~Lr~L~Ls~~~i~~lp~~i~~l~-~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~~i-~~L~~L~~L~ 207 (1124)
.++.+|++|++++|.+..+|. +..+. +|++|++++|.+..+..++.+++|++|++++|.++.+|..+ +.+++|++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 445555666666665555543 33332 66666666666555555566666666666666666665433 6666666666
Q ss_pred ecCCCCCCccCc-cccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCC
Q 001201 208 LSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1124)
Q Consensus 208 L~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (1124)
+++|. +..+|. ..++.+++|++|++++|.+...+ ......+..+++|+.|+++.|..
T Consensus 95 L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~--------~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKK--------HYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGST--------THHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcH--------hHHHHHHHHCCccceeCCCcCCH
Confidence 66665 555554 12556666666666666554100 00111355666666666666553
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=6.8e-12 Score=127.53 Aligned_cols=121 Identities=21% Similarity=0.287 Sum_probs=109.6
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC-cccCCCCCCcEEEccCCC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCA 167 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~ 167 (1124)
+.++++++.+.++|..+ .++|++|++++|.+. .+| ..|.++++|++|+|++|.|..++ .+|..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~-~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFT-LVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCC-SCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCc-hhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 57899999999999766 378999999999987 788 56799999999999999999885 579999999999999999
Q ss_pred CCCc--ccccCcccCcEEEccCCCCCccch-hhhCCCCccEEEecCCC
Q 001201 168 LGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCS 212 (1124)
Q Consensus 168 l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~ 212 (1124)
+..+ ..|..+++|++|+|++|.++.+|. .|..+.+|++|++++|.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 9977 579999999999999999999986 58999999999999987
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=5.7e-13 Score=133.65 Aligned_cols=131 Identities=16% Similarity=0.145 Sum_probs=95.5
Q ss_pred CCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCc-cc-ccCcccCcE
Q 001201 105 LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AI-IGNLKKLEI 182 (1124)
Q Consensus 105 ~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~-i~~L~~L~~ 182 (1124)
..+++|+.|++++|.+. .++. +....++|++|++++|.+..+ ..+..+++|++|+|++|.+..+ .. ++.+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 35667777777777666 4543 323334788888888887777 5677788888888888887766 23 477888888
Q ss_pred EEccCCCCCccch--hhhCCCCccEEEecCCCCCCccCcc---ccCCCCCccEEEeecccCc
Q 001201 183 LSLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIPPN---LLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 183 L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~---~i~~L~~L~~L~l~~~~i~ 239 (1124)
|++++|.+..+|. .++.+++|++|++++|. +..+|.. .++.+++|++|++++|...
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888888887776 67888888888888887 7777753 4677888888888777654
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=2.3e-11 Score=122.04 Aligned_cols=105 Identities=26% Similarity=0.469 Sum_probs=56.2
Q ss_pred CCcEEEeecCCCccCCc-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCccchh-hhCCCCccEEEec
Q 001201 134 NLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLS 209 (1124)
Q Consensus 134 ~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~ 209 (1124)
+|++|++++|.+..+|. .++.+++|++|++++|.+..+ ..++.+.+|++|++++|.++.+|.. ++.+.+|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444444432 234444455555544444443 2244555555555555555555543 4566666666666
Q ss_pred CCCCCCccCccccCCCCCccEEEeecccCc
Q 001201 210 GCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 210 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~ 239 (1124)
+|. +..+|...+..+++|++|++++|.+.
T Consensus 109 ~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 109 TNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 665 56666554566666666666666554
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=2.3e-11 Score=122.13 Aligned_cols=122 Identities=24% Similarity=0.348 Sum_probs=87.8
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCc-ccCCCCCCcEEEccCCC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCA 167 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~ 167 (1124)
+.++++++.+..+|... .++|++|++++|.+. .++...|.++++|++|++++|.+..+|. .+..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC-CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 56777777777777544 367777777777766 5666667777777777777777777754 35777777777777777
Q ss_pred CCCc--ccccCcccCcEEEccCCCCCccchh-hhCCCCccEEEecCCC
Q 001201 168 LGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCS 212 (1124)
Q Consensus 168 l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~ 212 (1124)
++.+ ..+..+.+|++|++++|.++.+|.. +..+.+|++|++++|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 7766 3467777777777777777777654 4677777777777776
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=5e-12 Score=155.78 Aligned_cols=131 Identities=21% Similarity=0.244 Sum_probs=109.6
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCc-ccccCcccCcEEE
Q 001201 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILS 184 (1124)
Q Consensus 106 ~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~ 184 (1124)
.++.|+.|+|++|.+. .+|..+| ++++|++|+|++|.|..+|..|+.+++|++|+|++|.|+.+ ..|++|.+|++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 7899999999999987 7888876 89999999999999999999999999999999999999988 7899999999999
Q ss_pred ccCCCCCccchhhhCCCCccEEEecCCCCCCccCccccCCCCC-ccEEEeecccCc
Q 001201 185 LVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSR-LEDLYMGNTSVK 239 (1124)
Q Consensus 185 Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~-L~~L~l~~~~i~ 239 (1124)
|++|.+..+|..|++|.+|++|+|++|. +...+...+..+.. +..|++++|.+.
T Consensus 300 L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 300 FFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp CCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCccc
Confidence 9999999999999999999999999998 65444332333211 122455555544
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=3e-11 Score=143.95 Aligned_cols=123 Identities=21% Similarity=0.241 Sum_probs=99.7
Q ss_pred CCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCc-ccccCcccCcEEEccCCCCCccchhhhCCCCccEEEecCCC
Q 001201 134 NLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCS 212 (1124)
Q Consensus 134 ~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~ 212 (1124)
.|++|+|++|.++.+|. ++.+++|++|+|++|.++.+ ..++++++|++|+|++|.++.+| .++.+++|++|+|++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 58899999999988886 88899999999999998877 78889999999999999998888 88999999999999988
Q ss_pred CCCcc--CccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEe
Q 001201 213 KLKVI--PPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEI 268 (1124)
Q Consensus 213 ~l~~l--p~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 268 (1124)
+..+ |.. ++.+++|++|++++|.+... ......-+..+++|+.|++
T Consensus 520 -l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~--------~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 -LQQSAAIQP-LVSCPRLVLLNLQGNSLCQE--------EGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CCSSSTTGG-GGGCTTCCEEECTTSGGGGS--------SSCTTHHHHHCTTCSEEEC
T ss_pred -CCCCCCcHH-HhcCCCCCEEEecCCcCCCC--------ccHHHHHHHHCcccCccCC
Confidence 7777 555 88899999999999887611 1122233455788888864
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=1.6e-13 Score=140.63 Aligned_cols=136 Identities=22% Similarity=0.290 Sum_probs=92.2
Q ss_pred hhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCc-ccccCcccCcEEEccCCCCCccchhhhCCCCccEE
Q 001201 128 VFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLF 206 (1124)
Q Consensus 128 ~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 206 (1124)
.|.++++|++|++++|.+..+| .+..+++|++|++++|.+..+ ..+..+++|++|++++|.++.+| .++.+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 4577788888888888777777 777778888888888877766 55566678888888888877776 57778888888
Q ss_pred EecCCCCCCccCc-cccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEE
Q 001201 207 DLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLE 267 (1124)
Q Consensus 207 ~L~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 267 (1124)
++++|. +..++. ..+..+++|++|++++|.+....... ..........+..+++|+.|+
T Consensus 121 ~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 121 YMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN-NATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT-TTHHHHHHHHHHHCSSCSEEC
T ss_pred ECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccc-cchHHHHHHHHHhCCCcEEEC
Confidence 888877 666654 23677888888888887764110000 000011122367778888776
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=8.6e-11 Score=131.02 Aligned_cols=187 Identities=18% Similarity=0.142 Sum_probs=125.1
Q ss_pred CCCcCEEEeecCCCc--------------------cCCCCC--C--------CCCccEEEecCCCCCCCCChhhhcCCCC
Q 001201 85 LKNCPTIFLHDCKHW--------------------EVPEGL--E--------YPQLEFFCMSPRDHSIKIPNHVFAGMSN 134 (1124)
Q Consensus 85 ~~~lr~L~l~~n~i~--------------------~l~~~~--~--------~~~L~~L~L~~n~~~~~~~~~~f~~l~~ 134 (1124)
+.++++|+|++|++. .+|... + +++|+.|++.+ .+. .++..+|.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcc
Confidence 567888888888877 444444 5 78888888877 444 677777888888
Q ss_pred CcEEEeecCCCccC-CcccCCCCCCcEEEccCCC----CCCc--ccc---------------------------------
Q 001201 135 LRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA----LGDI--AII--------------------------------- 174 (1124)
Q Consensus 135 Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~----l~~l--~~i--------------------------------- 174 (1124)
|+.|++++|.+..+ +.+|..+.++.++.+.... ...+ ..+
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 88888888877766 3456666666666654411 0000 000
Q ss_pred -----------------cCcccCcEEEccCCCCCccch-hhhCCCCccEEEecCCCCCCccCccccCCCCCcc-EEEeec
Q 001201 175 -----------------GNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLE-DLYMGN 235 (1124)
Q Consensus 175 -----------------~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~-~L~l~~ 235 (1124)
..+.+|+.|++++|.++.+|. .|..+.+|+.|++.++ +..++..+|.++.+|+ .+++.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc
Confidence 025678888888877887765 5777888888888775 7777777788888887 888776
Q ss_pred ccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccc--cccccce
Q 001201 236 TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLER 287 (1124)
Q Consensus 236 ~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~ 287 (1124)
.+. ......|.++++|+.+++..+.+..++..+ ...+|+.
T Consensus 284 -~l~-----------~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 284 -SVT-----------AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp -TCC-----------EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred -cce-----------EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 333 223456777888888888777777776654 3334443
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.15 E-value=4.4e-13 Score=137.39 Aligned_cols=147 Identities=22% Similarity=0.269 Sum_probs=122.4
Q ss_pred CcCEEEeecC--CCccCCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcccCCCCCCcEEEc
Q 001201 87 NCPTIFLHDC--KHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (1124)
Q Consensus 87 ~lr~L~l~~n--~i~~l~~~~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L 163 (1124)
.++...+.++ .+..+|..+ .+++|++|++++|.+. .+| .|.++++|++|++++|.+..+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 4566666654 455666555 7899999999999887 477 578999999999999999999988888899999999
Q ss_pred cCCCCCCcccccCcccCcEEEccCCCCCccch--hhhCCCCccEEEecCCCCCCccC----------ccccCCCCCccEE
Q 001201 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIP----------PNLLSGLSRLEDL 231 (1124)
Q Consensus 164 ~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp----------~~~i~~L~~L~~L 231 (1124)
++|.+..+..++.+++|++|++++|.+..+|. .+..+++|++|++++|. +...+ ...+..+++|++|
T Consensus 101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEE
Confidence 99999998889999999999999999998875 79999999999999997 54332 2236789999999
Q ss_pred EeecccCc
Q 001201 232 YMGNTSVK 239 (1124)
Q Consensus 232 ~l~~~~i~ 239 (1124)
+ ++.+.
T Consensus 180 d--~~~i~ 185 (198)
T 1ds9_A 180 D--GMPVD 185 (198)
T ss_dssp C--CGGGT
T ss_pred C--CcccC
Confidence 7 55544
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=1.7e-10 Score=114.77 Aligned_cols=101 Identities=24% Similarity=0.391 Sum_probs=73.3
Q ss_pred cEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCccchh-hhCCCCccEEEecCCC
Q 001201 136 RGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCS 212 (1124)
Q Consensus 136 r~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~ 212 (1124)
+.++++++.+..+|..+. .+|++|+|++|.+..+ ..++++++|++|+|++|.++.+|.. |.++.+|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777777777776553 6777777777777665 4577777777777777777777654 4777778888887777
Q ss_pred CCCccCccccCCCCCccEEEeecccCc
Q 001201 213 KLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 213 ~l~~lp~~~i~~L~~L~~L~l~~~~i~ 239 (1124)
+..+|.+.+..+++|++|++++|.+.
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -cceeCHHHhccccCCCEEEeCCCCcc
Confidence 77777666777777777777777654
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=2.1e-10 Score=113.77 Aligned_cols=102 Identities=24% Similarity=0.334 Sum_probs=75.2
Q ss_pred CcEEEeecCCCccCCcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCccchh-hhCCCCccEEEecCC
Q 001201 135 LRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGC 211 (1124)
Q Consensus 135 Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~ 211 (1124)
.+++++++|.+..+|..+. ++|++|+|++|.|+.+ ..+.++.+|++|+|++|.++.+|.. |..+.+|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4567777777777776553 6777777777777765 4577777777777777777777654 577888888888887
Q ss_pred CCCCccCccccCCCCCccEEEeecccCc
Q 001201 212 SKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 212 ~~l~~lp~~~i~~L~~L~~L~l~~~~i~ 239 (1124)
. +..+|.+.+.++++|++|++++|.+.
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred c-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7 77777766777788888888777654
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=3.3e-10 Score=112.77 Aligned_cols=101 Identities=21% Similarity=0.309 Sum_probs=47.0
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcc-cCCCCCCcEEEccCCC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL-FHLPLNLQTLCLDRCA 167 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~-i~~l~~Lr~L~L~~~~ 167 (1124)
+.+++++|.+..+|..+. ++|++|+|++|.+. .++...|.++++|++|+|++|.+..+|.. |..+++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 455555555555554432 45555555555444 33334444555555555555555544432 3444444444444444
Q ss_pred CCCc--ccccCcccCcEEEccCCCCC
Q 001201 168 LGDI--AIIGNLKKLEILSLVDSNIE 191 (1124)
Q Consensus 168 l~~l--~~i~~L~~L~~L~Ls~~~i~ 191 (1124)
|..+ ..+..+.+|++|+|++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 4433 12344444444444444433
No 139
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=99.07 E-value=3.2e-10 Score=92.75 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=62.7
Q ss_pred eeEEEEEEeecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHHhCCceEEEec
Q 001201 1028 TKKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVSI 1095 (1124)
Q Consensus 1028 ~~~~~~~~~~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~~ 1095 (1124)
|++..++|+|+|.+|+.+|.+++.+++|| ++.+|...++++|.|++++.++.+++++.|+.++++++
T Consensus 1 m~~~~~~vgm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~~ 67 (68)
T 3iwl_A 1 MPKHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLGL 67 (68)
T ss_dssp -CEEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHTTCSCEEEEEC
T ss_pred CceEEEEECcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEecCCHHHHHHHHHHcCCceEecCC
Confidence 45778889999999999999999999999 99999999999999999999999999999999998864
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=5.8e-10 Score=110.59 Aligned_cols=99 Identities=25% Similarity=0.322 Sum_probs=46.9
Q ss_pred CEEEeecCCCccCCCCCCCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCCcc-cCCCCCCcEEEccCCC
Q 001201 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL-FHLPLNLQTLCLDRCA 167 (1124)
Q Consensus 89 r~L~l~~n~i~~l~~~~~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~~-i~~l~~Lr~L~L~~~~ 167 (1124)
+.+++++|.+..+|..+ .++|++|+|++|.+. .++...|.++++|++|+|++|.|..+|.. |..+++|++|+|++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 45555555555555443 245555555555444 33334445555555555555555544332 3444444444444444
Q ss_pred CCCc--ccccCcccCcEEEccCCC
Q 001201 168 LGDI--AIIGNLKKLEILSLVDSN 189 (1124)
Q Consensus 168 l~~l--~~i~~L~~L~~L~Ls~~~ 189 (1124)
++.+ ..+..+.+|++|+|++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 4433 224444444444444443
No 141
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=98.96 E-value=2.5e-09 Score=88.86 Aligned_cols=68 Identities=10% Similarity=0.046 Sum_probs=63.8
Q ss_pred ceeEEEEEEeecchhHHHHHHhHhcCCC-CeeEEEEeCCCCeEEEEEecCHHHHHHHHHHhCCceEEEe
Q 001201 1027 RTKKAVLKLEIHGEKARQKAFSIVSKFT-GVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVS 1094 (1124)
Q Consensus 1027 ~~~~~~~~~~~~c~~c~~~~~~~~~~~~-gv~~v~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~ 1094 (1124)
||+++.++|+|+|.+|+.+|.+++.+++ ||.++.+|...++++|.+.+++.++.+.+++.|+.++.+.
T Consensus 3 ~m~~~~~~v~m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (73)
T 1cc8_A 3 EIKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVRSGK 71 (73)
T ss_dssp CCEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCEEEEE
T ss_pred CceEEEEEEeeECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCCceeee
Confidence 3678899999999999999999999999 9999999999999999999999999999999999888764
No 142
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=8.2e-09 Score=90.99 Aligned_cols=75 Identities=11% Similarity=0.098 Sum_probs=68.7
Q ss_pred ccceeEEEEEEeecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHHhCCceEEEecCCCC
Q 001201 1025 STRTKKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVSIGPAN 1099 (1124)
Q Consensus 1025 ~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~~~~~~ 1099 (1124)
+|.++++.++|+|+|.+|+.+|.+++.+++||.++.+|...++++|.+++++.++.+.+++.++.++++..+++.
T Consensus 15 ~~~~~~~~l~V~m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~ 89 (98)
T 2crl_A 15 QGTLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQ 89 (98)
T ss_dssp CCCCEEEEEEECCCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHTTTSCEEEEESCCCC
T ss_pred cccceEEEEEEeeECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCceEEccCCCCc
Confidence 466788899999999999999999999999999999999999999999999999999999999999988765543
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=4.4e-09 Score=117.06 Aligned_cols=168 Identities=11% Similarity=0.093 Sum_probs=136.0
Q ss_pred CCCcCEEEeecCCCccCCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCC----ccCC-ccc-----
Q 001201 85 LKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQF----LSLP-SLF----- 152 (1124)
Q Consensus 85 ~~~lr~L~l~~n~i~~l~~~~--~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i----~~lp-~~i----- 152 (1124)
..+++.|.+.. .+..+++.. +|++|+.|++.+|.+. .++..+|.++.++..+.+..+.. ..+. .+|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 67899999988 898998876 8999999999999876 78888898888887776655211 0000 000
Q ss_pred ---------------------------------------------CCCCCCcEEEccCCCCCCc--ccccCcccCcEEEc
Q 001201 153 ---------------------------------------------HLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSL 185 (1124)
Q Consensus 153 ---------------------------------------------~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L 185 (1124)
..+++|++|+|++|.+..+ ..|.++.+|+.|++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 0278999999999999988 77999999999999
Q ss_pred cCCCCCccch-hhhCCCCcc-EEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCC
Q 001201 186 VDSNIEQLPE-EMAQLTQLR-LFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHL 263 (1124)
Q Consensus 186 s~~~i~~lp~-~i~~L~~L~-~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L 263 (1124)
.+| ++.++. .|..+.+|+ .+++.+ . +..++..+|.++.+|+++++.++.+. ......|.++++|
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~-l~~I~~~aF~~c~~L~~l~l~~n~i~-----------~I~~~aF~~~~~L 323 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-S-VTAIEFGAFMGCDNLRYVLATGDKIT-----------TLGDELFGNGVPS 323 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-T-CCEECTTTTTTCTTEEEEEECSSCCC-----------EECTTTTCTTCCC
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-c-ceEEchhhhhCCccCCEEEeCCCccC-----------ccchhhhcCCcch
Confidence 997 888875 699999999 999988 4 89999988999999999999888876 3344578899999
Q ss_pred CEEEe
Q 001201 264 TTLEI 268 (1124)
Q Consensus 264 ~~L~l 268 (1124)
+.+..
T Consensus 324 ~~ly~ 328 (329)
T 3sb4_A 324 KLIYK 328 (329)
T ss_dssp CEEEC
T ss_pred hhhcc
Confidence 98763
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.75 E-value=1.6e-08 Score=113.59 Aligned_cols=100 Identities=22% Similarity=0.282 Sum_probs=72.3
Q ss_pred EEEeecC-CCccCCcccCCCCCCcEEEccC-CCCCCc--ccccCcccCcEEEccCCCCCccch-hhhCCCCccEEEecCC
Q 001201 137 GLALSNM-QFLSLPSLFHLPLNLQTLCLDR-CALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGC 211 (1124)
Q Consensus 137 ~L~Ls~~-~i~~lp~~i~~l~~Lr~L~L~~-~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~ 211 (1124)
.++++++ .+..+|. |..+.+|++|+|++ |.+..+ ..|++|.+|++|+|++|.|+.+|. .|++|.+|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3466666 6777777 77777777777775 777765 457777777777777777777654 5678888888888887
Q ss_pred CCCCccCccccCCCCCccEEEeecccCc
Q 001201 212 SKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 212 ~~l~~lp~~~i~~L~~L~~L~l~~~~i~ 239 (1124)
. +..+|.+.+..+. |++|++.+|.+.
T Consensus 91 ~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 A-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp C-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred c-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7 7777776555554 888888777665
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.74 E-value=7.8e-10 Score=124.53 Aligned_cols=88 Identities=16% Similarity=0.103 Sum_probs=39.4
Q ss_pred ccCcEEEccCCCCCc-----cchhhhCCCCccEEEecCCCCCCccC----ccccCCCCCccEEEeecccCcccccccccc
Q 001201 178 KKLEILSLVDSNIEQ-----LPEEMAQLTQLRLFDLSGCSKLKVIP----PNLLSGLSRLEDLYMGNTSVKWEFEGLNVG 248 (1124)
Q Consensus 178 ~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~lp----~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~ 248 (1124)
.+|++|+|++|.++. ++..+..+++|++|+|++|. +.... ...+...++|++|++++|.+...+.
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~----- 228 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA----- 228 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH-----
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH-----
Confidence 445555555554432 23334445555555555554 33211 0113344455555555555441111
Q ss_pred CCCcChhhhcCCCCCCEEEeecCCC
Q 001201 249 RSNASLQELKLLSHLTTLEIQICDA 273 (1124)
Q Consensus 249 ~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (1124)
......+...++|++|++++|.+
T Consensus 229 --~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 229 --LALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp --HHHHHHHHHCSSCCEEECTTSSC
T ss_pred --HHHHHHHHhCCCCCEEeccCCCC
Confidence 11223344455566666666654
No 146
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=98.72 E-value=3.4e-08 Score=80.91 Aligned_cols=64 Identities=14% Similarity=0.164 Sum_probs=59.9
Q ss_pred eEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEE--EecCHHHHHHHHHHhCCceEE
Q 001201 1029 KKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVI--GDIDAVPVVRKLRKQLCATEL 1092 (1124)
Q Consensus 1029 ~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~--g~~d~~~~~~~l~k~~~~~~~ 1092 (1124)
+++.++|+ |+|.+|+.+|.+++.+++||.++.+|...++++|. +.+++.++.+.+++.|+.+++
T Consensus 2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~ 68 (69)
T 4a4j_A 2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV 68 (69)
T ss_dssp EEEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCCceEe
Confidence 57889998 99999999999999999999999999999999999 668999999999999998775
No 147
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=98.71 E-value=5.3e-08 Score=81.03 Aligned_cols=67 Identities=9% Similarity=0.138 Sum_probs=62.3
Q ss_pred eeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCceEEEe
Q 001201 1028 TKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELVS 1094 (1124)
Q Consensus 1028 ~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~~ 1094 (1124)
|+++.++|+ |+|.+|+.+|.+++.+++||.++.+|...++++|..+ +++.++.+.+++.|+.+++++
T Consensus 1 M~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (74)
T 3dxs_X 1 MRKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEILA 71 (74)
T ss_dssp CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEEEEE
T ss_pred CcEEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceEEcc
Confidence 678899998 9999999999999999999999999999999999875 689999999999999998774
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.69 E-value=2.3e-07 Score=105.31 Aligned_cols=231 Identities=13% Similarity=0.170 Sum_probs=129.7
Q ss_pred CCcCEEEeecCCCccCCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC-cccCCCCCCcEEEc
Q 001201 86 KNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCL 163 (1124)
Q Consensus 86 ~~lr~L~l~~n~i~~l~~~~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L 163 (1124)
..+..+.+. +.+..++... .-.+|+.+.+..+ + ..+...+|.+. +|+.+.+.. .+..++ .+|..+.+|+.+++
T Consensus 113 ~~l~~i~ip-~~i~~I~~~aF~~~~L~~i~l~~~-i-~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILP-NSVKSIPKDAFRNSQIAKVVLNEG-L-KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECC-TTCCEECTTTTTTCCCSEEECCTT-C-CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEEC-CccCEehHhhcccCCccEEEeCCC-c-cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 445555554 2455555444 2235777777655 2 25666667664 577777765 555553 45777777777777
Q ss_pred cCCCCCCc--ccccCcccCcEEEccCCCCCccch-hhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcc
Q 001201 164 DRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKW 240 (1124)
Q Consensus 164 ~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~ 240 (1124)
.+|.+..+ ..|. ..+|+.+.+.. +++.++. .|.++.+|+.+++..+ +..++..+|.+ .+|+.+.+.++ +.
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~- 260 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VT- 260 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CC-
T ss_pred CCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-cc-
Confidence 77766655 3343 46777777764 3666653 5667777777777653 56666666666 66777776433 22
Q ss_pred ccccccccCCCcChhhhcCCCCCCEEEeecCCCc-----ccCccc--cccccceEEEEeCCcccccCCCCCceEEEEecc
Q 001201 241 EFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM-----ILPKGL--FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLY 313 (1124)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~l~~~~--~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~ 313 (1124)
......+.++++|+.+.+..+... .++... ...+|+.+.+..+ +
T Consensus 261 ----------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i------------------ 311 (401)
T 4fdw_A 261 ----------NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I------------------ 311 (401)
T ss_dssp ----------EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C------------------
T ss_pred ----------EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e------------------
Confidence 122345666777777777665443 333333 2334444433210 0
Q ss_pred ccchhH-HHHhhcccceeeccccCCccccccccccccccccceeeeccCC
Q 001201 314 TSNVDE-VIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (1124)
Q Consensus 314 ~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 362 (1124)
..++. .+..+.+|+.+.|.. ++..+ ..-.+..+ +|+.+.+.++.
T Consensus 312 -~~I~~~aF~~c~~L~~l~lp~--~l~~I-~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 312 -RILGQGLLGGNRKVTQLTIPA--NVTQI-NFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp -CEECTTTTTTCCSCCEEEECT--TCCEE-CTTSSSSS-CCCEEEECCSS
T ss_pred -EEEhhhhhcCCCCccEEEECc--cccEE-cHHhCCCC-CCCEEEEcCCC
Confidence 11211 344466677777643 23322 22233566 88888888775
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.68 E-value=1.6e-07 Score=106.77 Aligned_cols=186 Identities=13% Similarity=0.163 Sum_probs=112.6
Q ss_pred CcCEEEeecCCCccCCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC-cccCCCCCCcEEEc
Q 001201 87 NCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCL 163 (1124)
Q Consensus 87 ~lr~L~l~~n~i~~l~~~~--~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L 163 (1124)
+++.+.+.. .+..++... +|++|+.+++.+|.+. .++..+|. ..+|+.+.+..+ +..++ .+|.++.+|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 466777664 566666554 6778888888777665 57777776 467777777643 66553 45777777777777
Q ss_pred cCCCCCCc--ccccCcccCcEEEccCCCCCccc-hhhhCCCCccEEEecCCCCCC-----ccCccccCCCCCccEEEeec
Q 001201 164 DRCALGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLK-----VIPPNLLSGLSRLEDLYMGN 235 (1124)
Q Consensus 164 ~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~-----~lp~~~i~~L~~L~~L~l~~ 235 (1124)
..+ +..+ ..|.+ .+|+.+.+. +.++.++ ..|..+.+|+.+.+.++. +. .++...|.++.+|+.+.+.+
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~-~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGST-FNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSC-CCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred CCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcc-ccCCcccEECHHHhhCCccCCeEEeCC
Confidence 654 4444 44444 567777773 3466664 356677777777776654 32 46666667777777776663
Q ss_pred ccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCccc--cccccceEEEEeCC
Q 001201 236 TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIGD 294 (1124)
Q Consensus 236 ~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~l~l~~~~ 294 (1124)
+ +. ......+.++++|+.+.+..+ +..+...+ .. +|+.+.+..+.
T Consensus 310 ~-i~-----------~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 310 S-IR-----------ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp T-CC-----------EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred c-eE-----------EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 2 33 122345566666666666433 44444444 23 56666665443
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.68 E-value=5.4e-10 Score=125.80 Aligned_cols=155 Identities=15% Similarity=0.086 Sum_probs=117.7
Q ss_pred CCCCcCEEEeecCCCccCC-----CCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-----Ccc
Q 001201 84 MLKNCPTIFLHDCKHWEVP-----EGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-----PSL 151 (1124)
Q Consensus 84 ~~~~lr~L~l~~n~i~~l~-----~~~--~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-----p~~ 151 (1124)
..+.++.|++++|.+.... ..+ ..++|++|+|++|.+...-...++..+++|++|+|++|.+... ...
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4568999999999986432 111 3479999999999876433334455677999999999998743 222
Q ss_pred c-CCCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEccCCCCCc-----cchhhhCCCCccEEEecCCCCCCccCc
Q 001201 152 F-HLPLNLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIEQ-----LPEEMAQLTQLRLFDLSGCSKLKVIPP 219 (1124)
Q Consensus 152 i-~~l~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~lp~ 219 (1124)
+ ...++|++|+|++|.++. + ..+..+++|++|+|++|.|.. ++..+...++|++|+|++|. ++....
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHH
Confidence 3 357899999999999874 2 455788999999999998873 45677888999999999998 764332
Q ss_pred c----ccCCCCCccEEEeecccCc
Q 001201 220 N----LLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 220 ~----~i~~L~~L~~L~l~~~~i~ 239 (1124)
. .+...++|++|++++|.+.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHhCCCCCEEeccCCCCC
Confidence 1 1445689999999999887
No 151
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=98.66 E-value=3.1e-08 Score=82.14 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=61.4
Q ss_pred ceeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHHhCCceEEEe
Q 001201 1027 RTKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVS 1094 (1124)
Q Consensus 1027 ~~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~ 1094 (1124)
+|+++.++|. |+|.+|+.+|.+++.+ +||..+.+|...++++|.++ ++.++.+.+++.|+.++..+
T Consensus 3 ~m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~-~~~~i~~~i~~~Gy~~~~~~ 69 (73)
T 3fry_A 3 SVEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKE-DVDKYIKAVEAAGYQAKLRS 69 (73)
T ss_dssp CCEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGG-GHHHHHHHHHHTTCEEEECC
T ss_pred ccEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEEC-CHHHHHHHHHHcCCceEecC
Confidence 4678899998 9999999999999999 99999999999999999999 99999999999999887654
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.63 E-value=6.2e-08 Score=108.76 Aligned_cols=97 Identities=20% Similarity=0.175 Sum_probs=60.9
Q ss_pred EEecCC-CCCCCCChhhhcCCCCCcEEEeec-CCCccCC-cccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccC
Q 001201 113 FCMSPR-DHSIKIPNHVFAGMSNLRGLALSN-MQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVD 187 (1124)
Q Consensus 113 L~L~~n-~~~~~~~~~~f~~l~~Lr~L~Ls~-~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~ 187 (1124)
++++++ .+. .+|. +..+.+|++|+|++ |.+..+| ..|+.+++|++|+|++|.|..+ ..|++|.+|++|+|++
T Consensus 13 v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 344444 343 4555 46666666777764 6666665 4566677777777777766655 4566777777777777
Q ss_pred CCCCccchhhhCCCCccEEEecCCC
Q 001201 188 SNIEQLPEEMAQLTQLRLFDLSGCS 212 (1124)
Q Consensus 188 ~~i~~lp~~i~~L~~L~~L~L~~~~ 212 (1124)
|.+..+|..+.....|++|+|.+|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CccceeCHHHcccCCceEEEeeCCC
Confidence 7777776544333337777777776
No 153
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=98.38 E-value=1.7e-06 Score=70.92 Aligned_cols=66 Identities=12% Similarity=0.088 Sum_probs=57.9
Q ss_pred ceeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe--cCHHHHHHHHHHhCCceEE
Q 001201 1027 RTKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD--IDAVPVVRKLRKQLCATEL 1092 (1124)
Q Consensus 1027 ~~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~--~d~~~~~~~l~k~~~~~~~ 1092 (1124)
|++++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+..
T Consensus 1 m~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~ 69 (71)
T 2xmw_A 1 MAQTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV 69 (71)
T ss_dssp -CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCCCcee
Confidence 4677889998 9999999999999999999999999999999999765 6788899999999987653
No 154
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=98.37 E-value=3.6e-07 Score=73.88 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=55.9
Q ss_pred EEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHHhCCceEE
Q 001201 1032 VLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATEL 1092 (1124)
Q Consensus 1032 ~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~ 1092 (1124)
.++|. |+|.+|+.++.+++.+++||.++.+|...++++|.+.+++..+.+.+++.|+.+..
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~ 64 (66)
T 2roe_A 3 KLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAEV 64 (66)
T ss_dssp CEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECSCCCHHHHHHHHHTTTCEEEE
T ss_pred EEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECCCCCHHHHHHHHHHcCCCcEe
Confidence 46777 99999999999999999999999999999999997778999999999999987654
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.35 E-value=4.9e-06 Score=94.86 Aligned_cols=131 Identities=15% Similarity=0.165 Sum_probs=73.3
Q ss_pred CccCCCCC--CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccCC-cccCCCCCCcEEEccCCCCCCc--c
Q 001201 98 HWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--A 172 (1124)
Q Consensus 98 i~~l~~~~--~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~ 172 (1124)
+.++.... +|.+|+.+.+..+ +. .+...+|.++.+|+.+++..+ +..++ .+|..+.+|+.+.+..+ +..+ .
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 34555544 6778888888644 33 577777888888888888654 55553 45777777776655433 2222 3
Q ss_pred cccCcccCcEEEccCCCCCccc-hhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecc
Q 001201 173 IIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (1124)
Q Consensus 173 ~i~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 236 (1124)
.|.+...+...... .+..+. ..|.++.+|+.+.+..+ +..++..+|.++.+|+.+.+..+
T Consensus 135 aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 135 AFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred eeecccccccccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC
Confidence 34343333222221 122222 34566666666666543 44555555666666666665443
No 156
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=98.32 E-value=4.7e-07 Score=77.23 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=58.0
Q ss_pred cceeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHHhCCce
Q 001201 1026 TRTKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCAT 1090 (1124)
Q Consensus 1026 ~~~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~ 1090 (1124)
..++++.++|. |+|..|+.+|.+++.+++||.++.+|...++++|.+++++.++.+.+++.|+.+
T Consensus 19 ~~~~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~~~~~~i~~~i~~~Gy~~ 84 (85)
T 2k2p_A 19 FQGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSDAAHIAEIITAAGYTP 84 (85)
T ss_dssp ---CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESCCCHHHHHHHHHHTTCCC
T ss_pred ccccEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence 34566789997 999999999999999999999999999999999999999999999999988754
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.31 E-value=5.4e-06 Score=94.55 Aligned_cols=310 Identities=13% Similarity=0.104 Sum_probs=172.0
Q ss_pred CCChhhhcCCCCCcEEEeecCCCccCC-cccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCccc-hhhh
Q 001201 123 KIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMA 198 (1124)
Q Consensus 123 ~~~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp-~~i~ 198 (1124)
.|...+|.++.+|+.+.+.. .++.++ .+|.++.+|+.+++..+ +..+ ..+.++.+|+.+.+..+ +..+. ..|.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence 57788899999999999975 477774 57999999999999755 6655 67888888888777654 55554 3566
Q ss_pred CCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCcccCc
Q 001201 199 QLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (1124)
Q Consensus 199 ~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 278 (1124)
....+....... ...+...+|.++.+|+.+.+.++... .....+.++.+|+.+.+..+ +..+..
T Consensus 138 ~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~~~~------------I~~~~F~~c~~L~~i~l~~~-~~~I~~ 201 (394)
T 4fs7_A 138 GCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDSMET------------LHNGLFSGCGKLKSIKLPRN-LKIIRD 201 (394)
T ss_dssp TCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTTCCE------------ECTTTTTTCTTCCBCCCCTT-CCEECT
T ss_pred cccccccccCcc---ccccchhhhcccCCCcEEecCCccce------------eccccccCCCCceEEEcCCC-ceEeCc
Confidence 665444433322 55677777999999999998765432 22345677778887777543 333333
Q ss_pred cc--cccccceEEEEeCCcccccCCCCCceEEEEeccccchhHHHHhhcccceeeccccCCcccccccccccccccccee
Q 001201 279 GL--FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHL 356 (1124)
Q Consensus 279 ~~--~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L 356 (1124)
.. ....|+.+.+.... ..+........+|+.+.+... ... +....+..+..|+.+
T Consensus 202 ~~F~~~~~L~~i~~~~~~--------------------~~i~~~~~~~~~l~~i~ip~~--~~~-i~~~~f~~~~~l~~~ 258 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSL--------------------YYLGDFALSKTGVKNIIIPDS--FTE-LGKSVFYGCTDLESI 258 (394)
T ss_dssp TTTTTCTTCCBCCCCTTC--------------------CEECTTTTTTCCCCEEEECTT--CCE-ECSSTTTTCSSCCEE
T ss_pred hhhccccccceeecCCCc--------------------eEeehhhcccCCCceEEECCC--cee-cccccccccccceeE
Confidence 22 12223322211000 000111112334555544321 111 111223456666666
Q ss_pred eeccCCCeeEEeeCCcccccccccccceeecccccccccccccccCccccCCccEEEEccCCCcCcccchhhhhccCccc
Q 001201 357 HVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQ 436 (1124)
Q Consensus 357 ~L~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~ 436 (1124)
.+..+. ..+.. ..+.....++.+.+... .+ +......+.+|+.+.+.+ .++.+.. ..|.++.+|+
T Consensus 259 ~~~~~~--~~i~~----~~F~~~~~l~~~~~~~~----~i--~~~~F~~~~~L~~i~l~~--~i~~I~~-~aF~~c~~L~ 323 (394)
T 4fs7_A 259 SIQNNK--LRIGG----SLFYNCSGLKKVIYGSV----IV--PEKTFYGCSSLTEVKLLD--SVKFIGE-EAFESCTSLV 323 (394)
T ss_dssp EECCTT--CEECS----CTTTTCTTCCEEEECSS----EE--CTTTTTTCTTCCEEEECT--TCCEECT-TTTTTCTTCC
T ss_pred EcCCCc--ceeec----cccccccccceeccCce----ee--cccccccccccccccccc--ccceech-hhhcCCCCCC
Confidence 665442 12211 11222333444333221 01 111223556777777753 3555544 4577778888
Q ss_pred EEecccccccchhccccccCCcccCcccccccCccCEEeecCCCcccccccccccchhcccccceecccCC
Q 001201 437 TLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTL 507 (1124)
Q Consensus 437 ~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~ 507 (1124)
.++|.+ +++.+.. ..+..+.+|+.+.+.. +++.+.. .++.++.+|+++++...
T Consensus 324 ~i~lp~--~v~~I~~-----------~aF~~c~~L~~i~lp~--~l~~I~~---~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 324 SIDLPY--LVEEIGK-----------RSFRGCTSLSNINFPL--SLRKIGA---NAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECCCT--TCCEECT-----------TTTTTCTTCCEECCCT--TCCEECT---TTBTTCTTCCEEEEEGG
T ss_pred EEEeCC--cccEEhH-----------HhccCCCCCCEEEECc--cccEehH---HHhhCCCCCCEEEECCC
Confidence 888753 3554431 1233456777777643 2455443 35677777887777543
No 158
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=98.30 E-value=5.6e-07 Score=72.11 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=55.5
Q ss_pred EEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHHhCCce
Q 001201 1031 AVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCAT 1090 (1124)
Q Consensus 1031 ~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~ 1090 (1124)
+.++|. |+|.+|+.++.+++.+++||.++.+|...++++|.+.+++..+.+.+++.|+.+
T Consensus 3 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~G~~~ 63 (64)
T 2xmm_A 3 IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYEV 63 (64)
T ss_dssp EEEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEECSSCHHHHHHHHHHTTCCC
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence 467886 999999999999999999999999999999999998899999999999988754
No 159
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=98.30 E-value=1.8e-06 Score=70.90 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=57.0
Q ss_pred ceeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCce
Q 001201 1027 RTKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCAT 1090 (1124)
Q Consensus 1027 ~~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~ 1090 (1124)
.|+++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+
T Consensus 3 ~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 70 (71)
T 2l3m_A 3 AMEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYDV 70 (71)
T ss_dssp SEEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTTCEE
T ss_pred CcEEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence 3567789998 9999999999999999999999999999999999855 57888999999988754
No 160
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=98.30 E-value=1.5e-06 Score=88.34 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=63.1
Q ss_pred eEEEEEEeecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHHhCCceEEEecCC
Q 001201 1029 KKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVSIGP 1097 (1124)
Q Consensus 1029 ~~~~~~~~~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~~~~ 1097 (1124)
.+++++|+|+|..|+.+|.+++.+++||+++.+|...++++|.+.+++.++.+++++.++.++++..++
T Consensus 6 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aI~~~Gy~a~~~~~~~ 74 (222)
T 1qup_A 6 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGK 74 (222)
T ss_dssp EEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCCEEECCSC
T ss_pred eEEEEEEccccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEeccCCHHHHHHHHHHcCCccccccCCC
Confidence 456788889999999999999999999999999999999999999999999999999999988876544
No 161
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=98.19 E-value=5.2e-06 Score=68.18 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=57.2
Q ss_pred eEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCceEE
Q 001201 1029 KKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATEL 1092 (1124)
Q Consensus 1029 ~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~ 1092 (1124)
+++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+.+
T Consensus 3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 70 (72)
T 1aw0_A 3 QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATL 70 (72)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEE
T ss_pred eEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCCCCcEe
Confidence 45678887 9999999999999999999999999999999999876 5778899999999987654
No 162
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=98.18 E-value=3.8e-06 Score=70.19 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=60.0
Q ss_pred ceeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCceEEE
Q 001201 1027 RTKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1093 (1124)
Q Consensus 1027 ~~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1093 (1124)
+|+++.++|. |+|..|+.+|.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+..+
T Consensus 1 ~m~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 71 (77)
T 1y3j_A 1 NSSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVI 71 (77)
T ss_dssp CCEEEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTSCEEEE
T ss_pred CCEEEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEEC
Confidence 3677889997 9999999999999999999999999999999999875 57788999999999887664
No 163
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=98.17 E-value=7.8e-06 Score=67.42 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=56.1
Q ss_pred eeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEec-CHHHHHHHHHHhCCceE
Q 001201 1028 TKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDI-DAVPVVRKLRKQLCATE 1091 (1124)
Q Consensus 1028 ~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~~-d~~~~~~~l~k~~~~~~ 1091 (1124)
|.++.++|. |+|.+|..+|.+++.+++||.++.+|...++++|..+. .+..+.+.+++.|+.+.
T Consensus 2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy~~~ 67 (73)
T 1mwy_A 2 GTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLR 67 (73)
T ss_dssp CEEEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCEEE
T ss_pred CeEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCCccc
Confidence 556788998 99999999999999999999999999999999998764 35678888999888654
No 164
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=98.16 E-value=4e-06 Score=86.66 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=63.8
Q ss_pred eEEEEEEeecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHHhCCceEEEecCCC
Q 001201 1029 KKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVSIGPA 1098 (1124)
Q Consensus 1029 ~~~~~~~~~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~~~~~ 1098 (1124)
.++.++|.|+|..|+.+|.+++.+++||.++.+|...++++|.+.+++.++.+++++.++.+.+...+++
T Consensus 7 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~ 76 (249)
T 1jk9_B 7 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGKP 76 (249)
T ss_dssp EEEEEECCCCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHTTTCCCEEEEESST
T ss_pred eeEEEEEeeccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEecCCCHHHHHHHHHHhCCCcccccCCcc
Confidence 4567888899999999999999999999999999999999999999999999999999999888766543
No 165
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=98.15 E-value=6.6e-06 Score=67.57 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=57.7
Q ss_pred eeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCceEE
Q 001201 1028 TKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATEL 1092 (1124)
Q Consensus 1028 ~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~ 1092 (1124)
++++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+.+
T Consensus 2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 70 (72)
T 1osd_A 2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSV 70 (72)
T ss_dssp EEEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCEE
T ss_pred ceEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence 456788887 9999999999999999999999999999999999876 5778899999998887654
No 166
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=98.15 E-value=1.1e-05 Score=66.87 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=57.9
Q ss_pred EEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCceEEEe
Q 001201 1030 KAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELVS 1094 (1124)
Q Consensus 1030 ~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~~ 1094 (1124)
++.++|. |+|..|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+.+..
T Consensus 3 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (75)
T 3cjk_B 3 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN 71 (75)
T ss_dssp EEEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEeec
Confidence 4578887 9999999999999999999999999999999999875 577889999999998877654
No 167
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=98.12 E-value=5.4e-06 Score=68.76 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=56.8
Q ss_pred eeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCceEE
Q 001201 1028 TKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATEL 1092 (1124)
Q Consensus 1028 ~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~ 1092 (1124)
.+++.++|. |+|..|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+..
T Consensus 3 ~~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 71 (75)
T 1yjr_A 3 DGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSL 71 (75)
T ss_dssp CCCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHHHCEEEE
T ss_pred ceEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcee
Confidence 455678887 9999999999999999999999999999999999876 4567788889998887654
No 168
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=98.12 E-value=4.4e-06 Score=70.19 Aligned_cols=68 Identities=12% Similarity=0.107 Sum_probs=60.2
Q ss_pred cceeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCceEEE
Q 001201 1026 TRTKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1093 (1124)
Q Consensus 1026 ~~~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1093 (1124)
..++++.++|. |+|..|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+.+.
T Consensus 5 ~~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 76 (79)
T 1kvi_A 5 MGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIH 76 (79)
T ss_dssp TTCEEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCCCEEEC
T ss_pred CCcEEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCCceEec
Confidence 44667889997 9999999999999999999999999999999999865 57788999999999887654
No 169
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=98.11 E-value=7.4e-06 Score=70.77 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=56.1
Q ss_pred EEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHh---CCceEEE
Q 001201 1030 KAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQ---LCATELV 1093 (1124)
Q Consensus 1030 ~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~---~~~~~~~ 1093 (1124)
++.++|. |+|..|+.+|.+++.+++||.++.+|...++++|..+ +++.++.+.+++. ++.|.++
T Consensus 4 ~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~g~Ggy~~~~~ 74 (90)
T 2g9o_A 4 TATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGLYRVSIT 74 (90)
T ss_dssp EEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTTSTTTCEEECC
T ss_pred EEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhccCCCeEEEEe
Confidence 4578887 9999999999999999999999999999999999864 5788999999998 4766544
No 170
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=1.7e-06 Score=96.22 Aligned_cols=178 Identities=16% Similarity=0.143 Sum_probs=107.3
Q ss_pred CCcCEEEeecCCCcc---------CCCCC-CCCCccEEEecCCCCC--------CCCChhhhcCCCCCcEEEeecCCCcc
Q 001201 86 KNCPTIFLHDCKHWE---------VPEGL-EYPQLEFFCMSPRDHS--------IKIPNHVFAGMSNLRGLALSNMQFLS 147 (1124)
Q Consensus 86 ~~lr~L~l~~n~i~~---------l~~~~-~~~~L~~L~L~~n~~~--------~~~~~~~f~~l~~Lr~L~Ls~~~i~~ 147 (1124)
.+++.|.+....... +...+ .+++|+.|.+...... ..-...++..+++|+.|+++++.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 456777776544321 11112 5688999988654321 01123556788999999998874234
Q ss_pred CCcccCCCCCCcEEEccCCCCCC--ccccc--CcccCcEEEccCC--C------CCccchhh--hCCCCccEEEecCCCC
Q 001201 148 LPSLFHLPLNLQTLCLDRCALGD--IAIIG--NLKKLEILSLVDS--N------IEQLPEEM--AQLTQLRLFDLSGCSK 213 (1124)
Q Consensus 148 lp~~i~~l~~Lr~L~L~~~~l~~--l~~i~--~L~~L~~L~Ls~~--~------i~~lp~~i--~~L~~L~~L~L~~~~~ 213 (1124)
++. +. +++|++|+|..|.+.. +..++ .+++|++|+|+.+ . +..+...+ ..+++|++|++.+|.
T Consensus 187 l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~- 263 (362)
T 2ra8_A 187 IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE- 263 (362)
T ss_dssp CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-
T ss_pred ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-
Confidence 544 43 7899999998887652 23443 6888999988531 1 22222222 357889999998887
Q ss_pred CCc-cCccc--cCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCC
Q 001201 214 LKV-IPPNL--LSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (1124)
Q Consensus 214 l~~-lp~~~--i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (1124)
+.. .+... ...+++|++|+++.|.+...+. ......+..+++|+.|+++.|.+
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~-------~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGA-------RLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH-------HHHHTTHHHHTTCSEEECCSBBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHH-------HHHHhhcccCCcceEEECCCCcC
Confidence 432 11111 1356788899988887651111 11223345678888888887764
No 171
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=98.08 E-value=8.7e-06 Score=65.94 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=55.3
Q ss_pred eeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCce
Q 001201 1028 TKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCAT 1090 (1124)
Q Consensus 1028 ~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~ 1090 (1124)
|.++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+
T Consensus 1 m~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 67 (69)
T 2qif_A 1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV 67 (69)
T ss_dssp CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEE
T ss_pred CeEEEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence 345678888 9999999999999999999999999999999999864 57788999999988754
No 172
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=98.08 E-value=8.9e-06 Score=66.75 Aligned_cols=65 Identities=11% Similarity=0.106 Sum_probs=57.9
Q ss_pred EEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe--cCHHHHHHHHHHhCCceEEEe
Q 001201 1030 KAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD--IDAVPVVRKLRKQLCATELVS 1094 (1124)
Q Consensus 1030 ~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~--~d~~~~~~~l~k~~~~~~~~~ 1094 (1124)
++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+.++.
T Consensus 3 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~~ 70 (72)
T 1fvq_A 3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILR 70 (72)
T ss_dssp EEEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHHTCCEEEEE
T ss_pred EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHCCCceEEcc
Confidence 4578887 9999999999999999999999999999999999865 677889999999999887663
No 173
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=98.05 E-value=6.9e-06 Score=67.30 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=52.7
Q ss_pred ceeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHHhCCceEE
Q 001201 1027 RTKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATEL 1092 (1124)
Q Consensus 1027 ~~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~ 1092 (1124)
|++++.++|. |+|.+|+.+|.+++.+++||.++.+|...++++|.++.+ .+.+++.|+.+.+
T Consensus 1 m~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~----~~~i~~~Gy~~~~ 63 (71)
T 2aj0_A 1 MAEKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS----IQQVEQAGAFEHL 63 (71)
T ss_dssp CCCEEEEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEESCC----HHHHHHHHTTTTC
T ss_pred CCeEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEecCc----HHHHHHhCCCccc
Confidence 3456788998 999999999999999999999999999999999998875 4466777775443
No 174
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=98.04 E-value=8.5e-06 Score=69.40 Aligned_cols=66 Identities=11% Similarity=0.124 Sum_probs=58.3
Q ss_pred eeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCceEEE
Q 001201 1028 TKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1093 (1124)
Q Consensus 1028 ~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1093 (1124)
.+++.++|. |+|..|+.+|.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+.+.
T Consensus 8 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 77 (84)
T 1q8l_A 8 EVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVK 77 (84)
T ss_dssp CEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECS
T ss_pred ceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEec
Confidence 356778887 9999999999999999999999999999999999875 57888999999999876543
No 175
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=98.03 E-value=9.9e-06 Score=65.55 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=54.6
Q ss_pred EEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCceEE
Q 001201 1032 VLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATEL 1092 (1124)
Q Consensus 1032 ~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~ 1092 (1124)
.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+++
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 67 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEV 67 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEE
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCccc
Confidence 46676 9999999999999999999999999999999999875 5788899999998887764
No 176
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=98.02 E-value=1.5e-05 Score=71.97 Aligned_cols=67 Identities=9% Similarity=0.137 Sum_probs=58.9
Q ss_pred cceeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCceEE
Q 001201 1026 TRTKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATEL 1092 (1124)
Q Consensus 1026 ~~~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~ 1092 (1124)
..|+++.++|. |+|..|+.+|.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+..
T Consensus 5 ~~~~~~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~Gy~~~~ 75 (111)
T 2ofg_X 5 SPLKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTLAE 75 (111)
T ss_dssp -CCEEEEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTTTCCEEC
T ss_pred CcceEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHcCCeeee
Confidence 34677889998 9999999999999999999999999999999999876 5778899999998887653
No 177
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=2.8e-06 Score=82.45 Aligned_cols=19 Identities=26% Similarity=0.065 Sum_probs=14.2
Q ss_pred CCCcccEEEEecCCcceee
Q 001201 639 KWPMLKKLEVYGCDKVKIF 657 (1124)
Q Consensus 639 ~l~~L~~L~i~~C~~L~~l 657 (1124)
.+++|+.|++++|++++..
T Consensus 137 ~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp GCTTCCEEEEESCTTCCCH
T ss_pred cCCCCCEEECCCCCCCCch
Confidence 4677888888888877753
No 178
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=97.97 E-value=1.5e-05 Score=64.02 Aligned_cols=59 Identities=19% Similarity=0.113 Sum_probs=52.6
Q ss_pred EEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe--cCHHHHHHHHHHhCCc
Q 001201 1031 AVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD--IDAVPVVRKLRKQLCA 1089 (1124)
Q Consensus 1031 ~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~--~d~~~~~~~l~k~~~~ 1089 (1124)
+.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ .++..+.+.+++.|+.
T Consensus 3 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~ 64 (66)
T 1yg0_A 3 ATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQE 64 (66)
T ss_dssp EEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 457776 9999999999999999999999999999999999876 4778899999988874
No 179
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=97.96 E-value=1.9e-05 Score=65.54 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=56.7
Q ss_pred eeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCceE
Q 001201 1028 TKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATE 1091 (1124)
Q Consensus 1028 ~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~ 1091 (1124)
|.++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|.-+ +++..+.+.+++.|+.+.
T Consensus 5 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~ 72 (76)
T 1opz_A 5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVV 72 (76)
T ss_dssp CEEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEE
T ss_pred ceEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCcee
Confidence 566788998 9999999999999999999999999999999999753 578889999999888654
No 180
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=97.95 E-value=1.3e-05 Score=65.06 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=53.6
Q ss_pred EEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe--cCHHHHHHHHHHhCCceE
Q 001201 1032 VLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD--IDAVPVVRKLRKQLCATE 1091 (1124)
Q Consensus 1032 ~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~--~d~~~~~~~l~k~~~~~~ 1091 (1124)
.++|. |+|..|+.++.+++.+++||.++.+|...++++|..+ .++.++.+.+++.|+.+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~ 65 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYKAT 65 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTTSEEE
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCCCceE
Confidence 46676 9999999999999999999999999999999999765 577889999999888765
No 181
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=6.8e-06 Score=79.74 Aligned_cols=18 Identities=11% Similarity=0.414 Sum_probs=8.5
Q ss_pred ccCCccEEEEcCCcCccc
Q 001201 817 SFKNLTTLELWYCQRLMN 834 (1124)
Q Consensus 817 ~~~~L~~L~i~~C~~L~~ 834 (1124)
.+++|++|++++|..+++
T Consensus 83 ~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp TCSCCCEEEEESCTTCCH
T ss_pred CCCCCCEEEeCCCCccCH
Confidence 444444444444444444
No 182
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.93 E-value=3.1e-06 Score=84.75 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=39.7
Q ss_pred hcCCCCCcEEEeecC-CCc-----cCCcccCCCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEccCCCCCc----
Q 001201 129 FAGMSNLRGLALSNM-QFL-----SLPSLFHLPLNLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIEQ---- 192 (1124)
Q Consensus 129 f~~l~~Lr~L~Ls~~-~i~-----~lp~~i~~l~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~Ls~~~i~~---- 192 (1124)
+...+.|++|+|++| .+. .+...+...++|++|+|++|.|.. + ..+...++|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 445555666666555 543 233344555566666666665542 1 333344555555555555542
Q ss_pred -cchhhhCCCCccEEEe
Q 001201 193 -LPEEMAQLTQLRLFDL 208 (1124)
Q Consensus 193 -lp~~i~~L~~L~~L~L 208 (1124)
+...+...++|++|++
T Consensus 112 ~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 112 ALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHhCCCceEEEe
Confidence 2333444444555554
No 183
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=97.92 E-value=1.9e-05 Score=64.34 Aligned_cols=63 Identities=8% Similarity=0.134 Sum_probs=55.1
Q ss_pred eeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCce
Q 001201 1028 TKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCAT 1090 (1124)
Q Consensus 1028 ~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~ 1090 (1124)
+.++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+
T Consensus 2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 68 (71)
T 2ldi_A 2 LKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTL 68 (71)
T ss_dssp CEEEEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTTCEE
T ss_pred cEEEEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence 345678888 9999999999999999999999999999999999864 56788899999888754
No 184
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.92 E-value=0.0006 Score=77.44 Aligned_cols=155 Identities=10% Similarity=0.187 Sum_probs=98.7
Q ss_pred ccCCCCC--CC-CCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCC---CccCC-cccCCCCCCcEEEccCCCCCCc
Q 001201 99 WEVPEGL--EY-PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ---FLSLP-SLFHLPLNLQTLCLDRCALGDI 171 (1124)
Q Consensus 99 ~~l~~~~--~~-~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~---i~~lp-~~i~~l~~Lr~L~L~~~~l~~l 171 (1124)
.++++.. ++ ..|+.+.+..+ + ..+...+|.++.+|+.+.+..+. ++.+. .+|..+.+|+.+.+..+ +..+
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-v-t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-V-TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-C-CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eEcCHhhccCCCCcCEEEEECCC-e-eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 3454443 45 35888888654 2 36777888888888888887763 55553 46777778877766543 4444
Q ss_pred --ccccCcccCcEEEccCCCCCccc-hhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCcccccccccc
Q 001201 172 --AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVG 248 (1124)
Q Consensus 172 --~~i~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~ 248 (1124)
..+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..+...+|.. .+|+.+.+..+...
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~~~--------- 195 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKVTR--------- 195 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTCCE---------
T ss_pred hhhhhhhhcccccccccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCcccc---------
Confidence 56777788888888653 45554 35777888888887654 66677665544 56777777654322
Q ss_pred CCCcChhhhcCCCCCCEEEeecCC
Q 001201 249 RSNASLQELKLLSHLTTLEIQICD 272 (1124)
Q Consensus 249 ~~~~~~~~l~~l~~L~~L~l~~~~ 272 (1124)
.....+..+.++.........
T Consensus 196 ---i~~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 196 ---IGTNAFSECFALSTITSDSES 216 (394)
T ss_dssp ---ECTTTTTTCTTCCEEEECCSS
T ss_pred ---cccchhhhccccceecccccc
Confidence 123345566667766655443
No 185
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=97.91 E-value=3.4e-05 Score=67.38 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=59.7
Q ss_pred cceeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCceEEE
Q 001201 1026 TRTKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1093 (1124)
Q Consensus 1026 ~~~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1093 (1124)
..|.++.++|. |+|.+|+.+|.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+.+.
T Consensus 13 ~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 84 (95)
T 2kkh_A 13 KKLQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEANVR 84 (95)
T ss_dssp SCSEEEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEES
T ss_pred cceEEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEe
Confidence 34567789997 9999999999999999999999999999999999876 47788999999999877654
No 186
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=97.90 E-value=9.3e-06 Score=65.60 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=52.5
Q ss_pred EEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHHhCCceE
Q 001201 1031 AVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATE 1091 (1124)
Q Consensus 1031 ~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~ 1091 (1124)
+.++|. |+|.+|+.++.+++.++ ||.++.+|...++++|.++.+ .++.+.+++.|+.+.
T Consensus 3 ~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~-~~i~~~i~~~Gy~~~ 62 (67)
T 2kyz_A 3 YVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENL-DSVLKKLEEIDYPVE 62 (67)
T ss_dssp EEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCH-HHHHHHHHTTTCCCC
T ss_pred EEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCH-HHHHHHHHHcCCcee
Confidence 468885 99999999999999999 999999999999999988766 788899999887543
No 187
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=97.88 E-value=3.5e-05 Score=64.67 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=57.3
Q ss_pred eeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCceEE
Q 001201 1028 TKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATEL 1092 (1124)
Q Consensus 1028 ~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~ 1092 (1124)
|.++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+.+.|+.+..
T Consensus 2 m~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 70 (80)
T 1jww_A 2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKL 70 (80)
T ss_dssp CEEEEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHHHTSEEEE
T ss_pred ceEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCeEEe
Confidence 456778888 9999999999999999999999999999999999754 5778899999998987665
No 188
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.85 E-value=2.6e-06 Score=101.37 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=46.7
Q ss_pred hhhhhcc--cCcCC---cccHHHHHHHHHHHHHHHhhcCcccccC--CCCcEEechhHHHHHHHHHccCC
Q 001201 4 LKYGTGL--HIFKG---TYTMQETRDRLYALVHKLKDYCLLLDGP--TEDWIRMHDLVREVAISIASRDR 66 (1124)
Q Consensus 4 i~~wi~~--g~~~~---~~~~~~~~~~~~~~~~~L~~~~l~~~~~--~~~~~~mHDlv~dla~~i~~~e~ 66 (1124)
|++|+|+ ||+.. ..+.+++++ | |++|++|||++... +..+|+|||+|||+|+.++++++
T Consensus 407 i~~w~a~~~G~i~~~~~~~~~~~~~~-~---l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 407 VKLWSCVIPVDICSNEEEQLDDEVAD-R---LKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHHHHSCC-------CCCTHHHHH-H---HHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred eeeeeeeccceeccCCCCCCHHHHHH-H---HHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 6899999 99974 456788887 6 99999999999643 45689999999999999988765
No 189
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.85 E-value=0.00043 Score=78.66 Aligned_cols=110 Identities=13% Similarity=0.225 Sum_probs=84.0
Q ss_pred CCChhhhcCCC-CCcEEEeecCCCccC-CcccCCCCCCcEEEccCCC---CCCc--ccccCcccCcEEEccCCCCCccch
Q 001201 123 KIPNHVFAGMS-NLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA---LGDI--AIIGNLKKLEILSLVDSNIEQLPE 195 (1124)
Q Consensus 123 ~~~~~~f~~l~-~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~---l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~ 195 (1124)
.|...+|.+++ .|+.+.+..+ ++.+ ..+|.++.+|+.+.+..+. ++.+ ..|..+.+|+.+.+..+ ++.++.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 57778888885 5999999754 6766 4679999999999998764 5555 66778888888777654 666653
Q ss_pred -hhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecc
Q 001201 196 -EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (1124)
Q Consensus 196 -~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 236 (1124)
.|..+.+|+.+.+... +..++...+..+.+|+.+.+..+
T Consensus 131 ~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 5788888998888653 67777777888888888887654
No 190
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.85 E-value=1.6e-05 Score=88.39 Aligned_cols=218 Identities=14% Similarity=0.084 Sum_probs=132.9
Q ss_pred cccHHHHHHHHHHHHHHHhhcCccccc--------CCCCcEEe-c-------hhHHHHHHHHHccCCceEEecCCccc--
Q 001201 16 TYTMQETRDRLYALVHKLKDYCLLLDG--------PTEDWIRM-H-------DLVREVAISIASRDRHVFMLRNDIQI-- 77 (1124)
Q Consensus 16 ~~~~~~~~~~~~~~~~~L~~~~l~~~~--------~~~~~~~m-H-------Dlv~dla~~i~~~e~~~~~~~~~~~~-- 77 (1124)
..+.++|...+.+++.+=..||-.... ....++.. . |++..+-..+....-....++.-...
T Consensus 43 f~~~~~a~~~~~~l~~~k~~kGy~~~~~~~~~~p~~~a~rl~~~~~~~~~~~~~~~~fl~~~~~~~v~~L~lg~~~~~~~ 122 (362)
T 2ra8_A 43 FSSAGEAEKAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGXWGYEGE 122 (362)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCEECCHHHHHHCCCCEEEECCCHHHHHTTCCHHHHHHHCTTGGGCSEEEECCCCSSSC
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccccCCCCchhhceEEEeecCCcccHHHHHHHHhcCCCchhcceEEEcccccCCC
Confidence 346788988888888887778775421 11122322 1 23333333333222112223322111
Q ss_pred -C-------CCcccCCCCcCEEEeecCCCcc----------CCCCC-CCCCccEEEecCCCCCCCCChhhhcCCCCCcEE
Q 001201 78 -E-------WPVADMLKNCPTIFLHDCKHWE----------VPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGL 138 (1124)
Q Consensus 78 -~-------~~~~~~~~~lr~L~l~~n~i~~----------l~~~~-~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L 138 (1124)
. ......+.+++.|.+.+..... +...+ .+|+|+.|.+.+|... .++. + .+.+|+.|
T Consensus 123 ~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L 198 (362)
T 2ra8_A 123 DCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSL 198 (362)
T ss_dssp CSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEE
T ss_pred cHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEE
Confidence 0 0012236799999997654321 11112 6799999999988422 4554 3 38899999
Q ss_pred EeecCCCccC-Cccc--CCCCCCcEEEccCC--C------CCCc-ccc--cCcccCcEEEccCCCCCc-cchhh---hCC
Q 001201 139 ALSNMQFLSL-PSLF--HLPLNLQTLCLDRC--A------LGDI-AII--GNLKKLEILSLVDSNIEQ-LPEEM---AQL 200 (1124)
Q Consensus 139 ~Ls~~~i~~l-p~~i--~~l~~Lr~L~L~~~--~------l~~l-~~i--~~L~~L~~L~Ls~~~i~~-lp~~i---~~L 200 (1124)
+|..+.+..- ...+ ..+++|++|+|+.+ . +..+ ..+ ..+++|++|+|++|.+.. .+..+ ..+
T Consensus 199 ~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~ 278 (362)
T 2ra8_A 199 EIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278 (362)
T ss_dssp EEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSG
T ss_pred EEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccC
Confidence 9999887521 1223 37899999998632 1 2222 222 357899999999998763 22333 357
Q ss_pred CCccEEEecCCCCCCc-----cCccccCCCCCccEEEeecccCc
Q 001201 201 TQLRLFDLSGCSKLKV-----IPPNLLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 201 ~~L~~L~L~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~i~ 239 (1124)
++|++|+|+.|. +.. ++.. +..+++|+.|++++|.+.
T Consensus 279 ~~L~~LdLs~n~-L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 279 PQLETMDISAGV-LTDEGARLLLDH-VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGCSEEECCSSC-CBHHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred CCCCEEECCCCC-CChHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence 899999999887 765 3332 356799999999999876
No 191
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.81 E-value=7.7e-06 Score=81.83 Aligned_cols=117 Identities=11% Similarity=0.104 Sum_probs=89.8
Q ss_pred CcccCCCCCCcEEEccCC-CCCC-----c-ccccCcccCcEEEccCCCCCc-----cchhhhCCCCccEEEecCCCCCCc
Q 001201 149 PSLFHLPLNLQTLCLDRC-ALGD-----I-AIIGNLKKLEILSLVDSNIEQ-----LPEEMAQLTQLRLFDLSGCSKLKV 216 (1124)
Q Consensus 149 p~~i~~l~~Lr~L~L~~~-~l~~-----l-~~i~~L~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~ 216 (1124)
...+...++|++|+|++| .+.. + ..+....+|++|+|++|.|.. +...+...++|++|+|++|. +..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCH
Confidence 345778899999999999 8873 3 667778999999999998873 45567778999999999998 665
Q ss_pred -----cCccccCCCCCccEEEe--ecccCccccccccccCCCcChhhhcCCCCCCEEEeecCCCc
Q 001201 217 -----IPPNLLSGLSRLEDLYM--GNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (1124)
Q Consensus 217 -----lp~~~i~~L~~L~~L~l--~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (1124)
+... +...++|++|++ ++|.+...+. ......+...+.|++|++++|.+.
T Consensus 108 ~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g~-------~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEA-LQSNTSLIELRIDNQSQPLGNNVE-------MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHHH-------HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHH-HHhCCCceEEEecCCCCCCCHHHH-------HHHHHHHHhCCCcCEEeccCCCCC
Confidence 2333 677789999999 7888762221 123445677789999999998763
No 192
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=97.66 E-value=5.9e-05 Score=72.57 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=58.5
Q ss_pred eEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCceEEE
Q 001201 1029 KKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1093 (1124)
Q Consensus 1029 ~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1093 (1124)
.++.++|. |+|..|+.+|.+++.+++||.++.++...++++|.-+ +++.++.+.+++.|+.+...
T Consensus 74 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 142 (151)
T 1p6t_A 74 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLK 142 (151)
T ss_dssp EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEES
T ss_pred cccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEc
Confidence 45789997 9999999999999999999999999999999999854 68899999999999987653
No 193
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=97.62 E-value=8.6e-05 Score=71.20 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=57.5
Q ss_pred eEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCceEE
Q 001201 1029 KKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATEL 1092 (1124)
Q Consensus 1029 ~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~ 1092 (1124)
+++.++|. |+|..|+.+|.+++.+++||.++.+|...++++|..+ +++.++.+.+++.|+.+++
T Consensus 80 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 147 (149)
T 2ew9_A 80 GNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASL 147 (149)
T ss_dssp SEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTCEEEC
T ss_pred ceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhCCCceEe
Confidence 35678997 9999999999999999999999999999999999865 5788999999999987653
No 194
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=97.61 E-value=0.00013 Score=70.04 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=60.2
Q ss_pred cceeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCceEEE
Q 001201 1026 TRTKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1093 (1124)
Q Consensus 1026 ~~~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1093 (1124)
|.|+++.++|. |+|.+|+.++.+++.+++||.++.++...++++|..+ +++.++.+.+++.|+.+..+
T Consensus 1 ~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 72 (149)
T 2ew9_A 1 MAPQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVM 72 (149)
T ss_dssp CCCEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEEC
T ss_pred CCcEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCCceEee
Confidence 45788999997 9999999999999999999999999999999999764 56788999999989877653
No 195
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.59 E-value=3.9e-05 Score=80.57 Aligned_cols=61 Identities=30% Similarity=0.324 Sum_probs=31.1
Q ss_pred CCCCCcEEEeecCCCccC---CcccCCCCCCcEEEccCCCCCCcccccCcc--cCcEEEccCCCCC
Q 001201 131 GMSNLRGLALSNMQFLSL---PSLFHLPLNLQTLCLDRCALGDIAIIGNLK--KLEILSLVDSNIE 191 (1124)
Q Consensus 131 ~l~~Lr~L~Ls~~~i~~l---p~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~--~L~~L~Ls~~~i~ 191 (1124)
++++|++|+|++|.|..+ |..+..+++|++|+|++|.|..+..+..+. +|++|+|++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 455555555555555543 233445555555555555555443333333 5555555555543
No 196
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=97.54 E-value=0.00019 Score=72.80 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=59.1
Q ss_pred eEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCceEEEe
Q 001201 1029 KKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELVS 1094 (1124)
Q Consensus 1029 ~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~~ 1094 (1124)
.++.++|. |+|.+|+.+|.+++.+++||.++.+|...++++|..+ +++.++.+.+++.|+.+.++.
T Consensus 122 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 191 (202)
T 2rop_A 122 STTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVS 191 (202)
T ss_dssp EEEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSCEEEC-
T ss_pred eEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEcC
Confidence 56789998 9999999999999999999999999999999999864 578899999999999887653
No 197
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.49 E-value=8.5e-06 Score=85.60 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=19.3
Q ss_pred CCCCCcEEEccCCCCCCccc----ccCcccCcEEEccCCCCCcc
Q 001201 154 LPLNLQTLCLDRCALGDIAI----IGNLKKLEILSLVDSNIEQL 193 (1124)
Q Consensus 154 ~l~~Lr~L~L~~~~l~~l~~----i~~L~~L~~L~Ls~~~i~~l 193 (1124)
++++|++|+|++|.|..+.. +..+++|++|+|++|.|..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence 34555555555555544322 22444555555555544443
No 198
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=96.82 E-value=0.0022 Score=61.35 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=53.5
Q ss_pred eeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCc
Q 001201 1028 TKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCA 1089 (1124)
Q Consensus 1028 ~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~ 1089 (1124)
+++..+.|. |+|.+|..++.+++.+++||.++.++...++++|..+ +++..+.+.+++.++.
T Consensus 5 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~ 70 (151)
T 1p6t_A 5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYH 70 (151)
T ss_dssp CEEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCE
T ss_pred ceEEEEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHcCCc
Confidence 455678888 9999999999999999999999999999999988754 5778888889887764
No 199
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=96.81 E-value=0.0018 Score=65.45 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=52.8
Q ss_pred ceeEEEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHh
Q 001201 1027 RTKKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQ 1086 (1124)
Q Consensus 1027 ~~~~~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~ 1086 (1124)
.|+++.++|. |+|.+|+.+|.+++.+++||.++.++...++++|..+ +++..+.+.+++.
T Consensus 18 ~~~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 81 (202)
T 2rop_A 18 HVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEAL 81 (202)
T ss_dssp --CEEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTS
T ss_pred ccEEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4566789998 9999999999999999999999999999999999865 5678888888886
No 200
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=96.21 E-value=0.0084 Score=73.03 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=55.4
Q ss_pred EEEEEe-ecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHHhCCce
Q 001201 1031 AVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCAT 1090 (1124)
Q Consensus 1031 ~~~~~~-~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~ 1090 (1124)
+.++|+ |+|.+|+.++.+++.+++||+++.++...++++|.-+ +++.++.+.+++.|+.+
T Consensus 4 ~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy~~ 67 (723)
T 3j09_A 4 RTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYGV 67 (723)
T ss_dssp EEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCCEE
T ss_pred EEEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcCCcc
Confidence 578888 9999999999999999999999999999999999864 68999999999999865
No 201
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.14 E-value=0.021 Score=64.14 Aligned_cols=130 Identities=14% Similarity=0.241 Sum_probs=74.2
Q ss_pred CChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCccch-hhhC
Q 001201 124 IPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQ 199 (1124)
Q Consensus 124 ~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~ 199 (1124)
+....|....+|+.+.+..+ +..+ ..++..+.+|+.+.+..+ +..+ ..+.++.+|+.+.+.. .+..++. .|..
T Consensus 208 i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~ 284 (379)
T 4h09_A 208 VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSG 284 (379)
T ss_dssp ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTT
T ss_pred Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccc
Confidence 33444556666666666543 3333 334566666666666544 4444 4555666666666654 3555543 4666
Q ss_pred CCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCccccccccccCCCcChhhhcCCCCCCEEEee
Q 001201 200 LTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQ 269 (1124)
Q Consensus 200 L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 269 (1124)
+.+|+.+.+.++. ++.++..+|.++.+|+.+.+..+ +. ......+.++.+|+.+.+.
T Consensus 285 c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-----------~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 285 CSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LK-----------TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-----------EECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccc-cceehhhhhcCCCCCCEEEcCcc-cc-----------EEHHHHhhCCCCCCEEEEC
Confidence 6777777776655 66666666677777777766543 22 1123356666666666654
No 202
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.11 E-value=0.021 Score=64.08 Aligned_cols=125 Identities=18% Similarity=0.191 Sum_probs=99.3
Q ss_pred CCCCccEEEecCCCCCCCCChhhhcCCCCCcEEEeecCCCccC-CcccCCCCCCcEEEccCCCCCCc--ccccCcccCcE
Q 001201 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEI 182 (1124)
Q Consensus 106 ~~~~L~~L~L~~n~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~ 182 (1124)
.+..|+.+.+..+- ..+...+|.++..|+.+.+..+ +..+ ..++..+.+|+.+.+..+ +..+ ..|.++.+|+.
T Consensus 215 ~~~~l~~i~~~~~~--~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSGV--TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTTC--CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccce--eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 67888888886552 2567778889999999998765 6666 356888899999998654 5555 67888999999
Q ss_pred EEccCCCCCccc-hhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecc
Q 001201 183 LSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (1124)
Q Consensus 183 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 236 (1124)
+++.++.++.++ ..|.++.+|+.+.+..+ ++.++..+|.++.+|+.+.+..+
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc
Confidence 999988888886 46889999999999653 78888888999999999888654
No 203
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.85 E-value=0.04 Score=50.66 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=17.8
Q ss_pred CCcEEEeecCCCccCCc-ccCCCCCCcEEEccCCCC
Q 001201 134 NLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCAL 168 (1124)
Q Consensus 134 ~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l 168 (1124)
+|++|+|++|.|+.+|. .|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 34555555555555532 344555555555555543
No 204
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.66 E-value=0.032 Score=51.36 Aligned_cols=56 Identities=21% Similarity=0.417 Sum_probs=44.1
Q ss_pred cEEEccCCCCC--ccchhhhCCCCccEEEecCCCCCCccCccccCCCCCccEEEeecccCc
Q 001201 181 EILSLVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (1124)
Q Consensus 181 ~~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~i~ 239 (1124)
.+++.++++++ .+|..+. .+|++|+|++|. +..+|.++|..+.+|++|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 36777888887 8885432 468889999888 88888888888888999998888654
No 205
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.54 E-value=0.026 Score=55.63 Aligned_cols=62 Identities=18% Similarity=0.300 Sum_probs=34.0
Q ss_pred cCCCCCcEEEeecC-CCc-----cCCcccCCCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEccCCCCC
Q 001201 130 AGMSNLRGLALSNM-QFL-----SLPSLFHLPLNLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIE 191 (1124)
Q Consensus 130 ~~l~~Lr~L~Ls~~-~i~-----~lp~~i~~l~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~Ls~~~i~ 191 (1124)
.+-..|+.|+|+++ .|. .+-+++..-+.|+.|+|++|.|.+ + ..+..-+.|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34455666666553 443 233345555666667766666652 2 33444556666666666654
No 206
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.12 E-value=0.023 Score=56.12 Aligned_cols=105 Identities=10% Similarity=0.026 Sum_probs=57.6
Q ss_pred CCCccEEEecCC-CCCCC---CChhhhcCCCCCcEEEeecCCCc-----cCCcccCCCCCCcEEEccCCCCCC-----c-
Q 001201 107 YPQLEFFCMSPR-DHSIK---IPNHVFAGMSNLRGLALSNMQFL-----SLPSLFHLPLNLQTLCLDRCALGD-----I- 171 (1124)
Q Consensus 107 ~~~L~~L~L~~n-~~~~~---~~~~~f~~l~~Lr~L~Ls~~~i~-----~lp~~i~~l~~Lr~L~L~~~~l~~-----l- 171 (1124)
-+.|+.|+|++| .+... .....+..-..|+.|+|++|.|. .+-+.+..-+.|++|+|++|.|.. +
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 355666666654 33210 11223455667777777777765 233344455677888888887762 2
Q ss_pred ccccCcccCcEEEccCCCC---C-----ccchhhhCCCCccEEEecCC
Q 001201 172 AIIGNLKKLEILSLVDSNI---E-----QLPEEMAQLTQLRLFDLSGC 211 (1124)
Q Consensus 172 ~~i~~L~~L~~L~Ls~~~i---~-----~lp~~i~~L~~L~~L~L~~~ 211 (1124)
..+..-+.|++|+|+++.. . .+-..+..=+.|+.|+++.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 4555556677777765422 2 12223344455666665544
No 207
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=90.57 E-value=0.13 Score=63.39 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=35.9
Q ss_pred hhhhhhcccCcCCcccHHHHHHHHHHHHHHHhhcCcccccCCCCcEEechhHHHHHH
Q 001201 3 LLKYGTGLHIFKGTYTMQETRDRLYALVHKLKDYCLLLDGPTEDWIRMHDLVREVAI 59 (1124)
Q Consensus 3 Li~~wi~~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~mHDlv~dla~ 59 (1124)
++.+|+++| ++.+..+ |++|+++|||+..+...+|+|||++++++.
T Consensus 392 La~LW~aeG--------eedAe~~---L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 392 LSLIWFDVI--------KSDVMVV---VNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHCSSC--------SHHHHHH---HHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHhcCCC--------HHHHHHH---HHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 677888887 1223344 999999999998656689999999999763
No 208
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=87.78 E-value=0.3 Score=64.35 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=31.9
Q ss_pred HHHHHHHhhcCcccccC--CCCcEEechhHHHHHHHHHccC
Q 001201 27 YALVHKLKDYCLLLDGP--TEDWIRMHDLVREVAISIASRD 65 (1124)
Q Consensus 27 ~~~~~~L~~~~l~~~~~--~~~~~~mHDlv~dla~~i~~~e 65 (1124)
.+++++|++++|++... +..+|+|||+||++|+..+.+|
T Consensus 412 ~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 412 EDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 44499999999998643 2336999999999999998776
No 209
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=85.77 E-value=1.9 Score=35.71 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=44.7
Q ss_pred eeEEEEEEeecchhHHHHHHhHhcCCCCeeEEE-----EeCCCC--eEEEEEe-cCHHHHHHHHHHhCC
Q 001201 1028 TKKAVLKLEIHGEKARQKAFSIVSKFTGVLSIL-----FDPKDK--KMIVIGD-IDAVPVVRKLRKQLC 1088 (1124)
Q Consensus 1028 ~~~~~~~~~~~c~~c~~~~~~~~~~~~gv~~v~-----~d~~~~--~~~v~g~-~d~~~~~~~l~k~~~ 1088 (1124)
.+++||.|.---+=-.-.+-+++++++||+.|. +|.+.. |+||.|+ +|.+++.+.+.+.|+
T Consensus 6 iRRlVLDVlKPh~P~ivdlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~Gg 74 (100)
T 3bpd_A 6 LRRLVLDVLKPHEPKTIVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGG 74 (100)
T ss_dssp EEEEEEEEEEESCSCHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTC
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCC
Confidence 456777776333333455667888999988764 444443 7999998 999999999999886
No 210
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=83.23 E-value=5.5 Score=32.84 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=44.0
Q ss_pred ceeEEEEEEeec-chhHHHHHHhHhcCCCCeeEEE-----EeCCCC--eEEEEEe-cCHHHHHHHHHHhCC
Q 001201 1027 RTKKAVLKLEIH-GEKARQKAFSIVSKFTGVLSIL-----FDPKDK--KMIVIGD-IDAVPVVRKLRKQLC 1088 (1124)
Q Consensus 1027 ~~~~~~~~~~~~-c~~c~~~~~~~~~~~~gv~~v~-----~d~~~~--~~~v~g~-~d~~~~~~~l~k~~~ 1088 (1124)
..++++|.|.-- -+=-.-.+-+++++++||+.|. +|.+.. |+||.|+ .|.+++.+.+.+.|+
T Consensus 3 ~irRlVLDVlKP~h~P~ivd~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg 73 (96)
T 2x3d_A 3 AIRRLVLDVLKPIRGTSIVDLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGC 73 (96)
T ss_dssp CEEEEEEEEEEESSSSCHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTTC
T ss_pred ceEEEEEEcccCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCC
Confidence 456677777622 2222344566788999988764 444443 7999998 999999999999886
No 211
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=82.63 E-value=6.2 Score=32.67 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=42.9
Q ss_pred eeEEEEEEeecchhHHHHHHhHhcCCCCeeEE-----EEeCCCC--eEEEEEe-cCHHHHHHHHHHhCC
Q 001201 1028 TKKAVLKLEIHGEKARQKAFSIVSKFTGVLSI-----LFDPKDK--KMIVIGD-IDAVPVVRKLRKQLC 1088 (1124)
Q Consensus 1028 ~~~~~~~~~~~c~~c~~~~~~~~~~~~gv~~v-----~~d~~~~--~~~v~g~-~d~~~~~~~l~k~~~ 1088 (1124)
.++++|.|.---+=-.-.+-+++++++||+.| ++|.+.. ++||.|+ +|.+++.+.+.+.|+
T Consensus 6 irRlVLDVlKPh~p~i~d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE~~Gg 74 (97)
T 2raq_A 6 LIRIVLDILKPHEPIIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGG 74 (97)
T ss_dssp EEEEEEEEECCSCSCHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTC
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCC
Confidence 45666666533222334555677888887765 3455553 7999998 999999999999887
No 212
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=70.72 E-value=2.7 Score=49.94 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCcccccC--CCCcEEechhHHHHHHHHHc
Q 001201 26 LYALVHKLKDYCLLLDGP--TEDWIRMHDLVREVAISIAS 63 (1124)
Q Consensus 26 ~~~~~~~L~~~~l~~~~~--~~~~~~mHDlv~dla~~i~~ 63 (1124)
..+++++|+++||++... ...+|+|||++|++++....
T Consensus 411 ~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 411 VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 344599999999998532 34589999999999998743
No 213
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=51.58 E-value=42 Score=28.18 Aligned_cols=55 Identities=13% Similarity=0.228 Sum_probs=35.4
Q ss_pred eeEEEEEEeecchhHHHHHHhHhcCCCCeeEEEEeCCCCeEEEEEe-cCHHHHHHHHHH
Q 001201 1028 TKKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD-IDAVPVVRKLRK 1085 (1124)
Q Consensus 1028 ~~~~~~~~~~~c~~c~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~-~d~~~~~~~l~k 1085 (1124)
..-+++.+. -+=...|.++|.++|||+--.+|...+|++|+=+ -+..++.+.+++
T Consensus 7 IsslvV~~~---p~~~~~V~~~L~~ipgvEi~~~~~~~GkiVV~iEa~~~~~l~~~i~~ 62 (95)
T 2jsx_A 7 VCSLVVQAK---SERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLIQTIES 62 (95)
T ss_dssp EEEEEEEEC---TTSHHHHHHHHTTSTTEEEEEEETTTTEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEEEEEC---CCCHHHHHHHHHCCCCeEEEEecCCCCCEEEEEEeCCHHHHHHHHHH
Confidence 334444443 2347889999999999965556777788776555 344455555543
No 214
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=49.52 E-value=31 Score=28.71 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=27.6
Q ss_pred HHHHHhHhcCCCCeeEEEEeCCCCeEEEEEecCHHHH
Q 001201 1043 RQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPV 1079 (1124)
Q Consensus 1043 ~~~~~~~~~~~~gv~~v~~d~~~~~~~v~g~~d~~~~ 1079 (1124)
..+..+.+....||++|.+|.++++|+|.| .|++.+
T Consensus 33 gGk~Ik~I~e~tGv~~IdI~eddG~V~I~g-~~~ea~ 68 (91)
T 2cpq_A 33 HGSNIQQARKVPGVTAIELDEDTGTFRIYG-ESADAV 68 (91)
T ss_dssp TTHHHHHHHTSTTEEEEEEETTTTEEEEEE-SSHHHH
T ss_pred CcHHHHHHHHHhCCeEEEEEcCCCEEEEEE-CCHHHH
Confidence 456677777889998899997779999999 344443
No 215
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*
Probab=27.34 E-value=51 Score=28.92 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=27.6
Q ss_pred CCCCeeEEEEeCCCCeEEEEEe-cCHHHHHHHH
Q 001201 1052 KFTGVLSILFDPKDKKMIVIGD-IDAVPVVRKL 1083 (1124)
Q Consensus 1052 ~~~gv~~v~~d~~~~~~~v~g~-~d~~~~~~~l 1083 (1124)
++|||+.+..|++.++|+-.-| +|-..+.+.+
T Consensus 119 aiPGVTtlklDm~~~Rv~eh~DlmDyqTm~DQl 151 (154)
T 3gzb_A 119 AIPAVTSLKLDMLNRRVTEHVDLIDYQTMSDQL 151 (154)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEECHHHHHHHH
T ss_pred ecCceEEEeecCCccchhhhHhHHhHHHHHHHh
Confidence 5899999999999999998777 8888777655
No 216
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=22.46 E-value=50 Score=28.18 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=26.3
Q ss_pred EEEEEEeecchhHH------HHHHhHhcCCCCeeEEEEeCC
Q 001201 1030 KAVLKLEIHGEKAR------QKAFSIVSKFTGVLSILFDPK 1064 (1124)
Q Consensus 1030 ~~~~~~~~~c~~c~------~~~~~~~~~~~gv~~v~~d~~ 1064 (1124)
++.+.+.+.+.+|. ..+.+++.+++||++|.++..
T Consensus 42 ~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~ 82 (103)
T 3cq1_A 42 RAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVT 82 (103)
T ss_dssp EEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEEC
T ss_pred EEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEe
Confidence 45566666666664 678889999999999988753
No 217
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=20.41 E-value=1.5e+02 Score=24.76 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=28.0
Q ss_pred eEEEEEEeecchhHHHHHHhHhcCCCCeeEEEEe
Q 001201 1029 KKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFD 1062 (1124)
Q Consensus 1029 ~~~~~~~~~~c~~c~~~~~~~~~~~~gv~~v~~d 1062 (1124)
-++++.+.-.+.+-..+..+.+.+++||.++..=
T Consensus 42 GkiVV~iEa~~~~~l~~~i~~I~~i~GVlst~lv 75 (95)
T 2jsx_A 42 GQLIVVVEAEDSETLIQTIESVRNVEGVLAVSLV 75 (95)
T ss_dssp TEEEEEEEESSHHHHHHHHHHHTTSTTEEEEEES
T ss_pred CCEEEEEEeCCHHHHHHHHHHHhcCCCccEEeEE
Confidence 4789999977766666677999999999998763
Done!