Query 001202
Match_columns 1124
No_of_seqs 582 out of 3849
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 18:35:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2006 WD40 repeat protein [G 100.0 4E-100 8E-105 898.5 31.1 827 228-1112 121-985 (1023)
2 PF07064 RIC1: RIC1; InterPro 100.0 4E-65 8.6E-70 549.4 23.0 247 680-937 4-257 (258)
3 KOG0276 Vesicle coat complex C 100.0 3.8E-38 8.3E-43 352.1 41.5 630 67-924 13-690 (794)
4 KOG0271 Notchless-like WD40 re 100.0 5.8E-35 1.3E-39 310.8 26.9 345 37-479 84-479 (480)
5 KOG0291 WD40-repeat-containing 100.0 1.4E-32 3E-37 313.9 46.5 406 22-483 99-552 (893)
6 KOG0271 Notchless-like WD40 re 100.0 3.3E-32 7.2E-37 289.9 26.6 313 203-569 110-479 (480)
7 KOG0272 U4/U6 small nuclear ri 100.0 9.1E-32 2E-36 290.7 23.3 276 66-479 174-458 (459)
8 KOG0291 WD40-repeat-containing 100.0 9E-28 1.9E-32 274.8 47.9 468 23-571 59-612 (893)
9 KOG0318 WD40 repeat stress pro 100.0 4.4E-27 9.5E-32 260.2 47.5 444 21-571 61-602 (603)
10 KOG0319 WD40-repeat-containing 100.0 1.1E-27 2.3E-32 274.5 36.8 425 24-482 67-620 (775)
11 KOG0272 U4/U6 small nuclear ri 100.0 3.8E-29 8.3E-34 270.5 21.3 265 222-527 179-458 (459)
12 KOG0318 WD40 repeat stress pro 100.0 5.2E-27 1.1E-31 259.5 38.3 374 23-419 194-601 (603)
13 KOG0286 G-protein beta subunit 99.9 1.2E-25 2.7E-30 233.2 29.6 282 66-479 54-343 (343)
14 KOG0292 Vesicle coat complex C 99.9 2.1E-23 4.6E-28 241.8 47.5 264 138-481 17-321 (1202)
15 KOG0645 WD40 repeat protein [G 99.9 2.2E-24 4.7E-29 222.1 31.7 280 253-571 10-311 (312)
16 KOG0263 Transcription initiati 99.9 1.2E-25 2.5E-30 261.1 23.4 230 219-482 379-650 (707)
17 KOG0279 G protein beta subunit 99.9 2.4E-24 5.1E-29 222.7 29.5 278 203-527 10-311 (315)
18 KOG0279 G protein beta subunit 99.9 5.8E-24 1.2E-28 219.9 30.8 277 253-571 11-313 (315)
19 KOG0319 WD40-repeat-containing 99.9 1.2E-24 2.5E-29 249.7 28.2 309 24-418 287-617 (775)
20 KOG0263 Transcription initiati 99.9 5.1E-25 1.1E-29 255.9 23.1 243 203-470 446-703 (707)
21 KOG0286 G-protein beta subunit 99.9 8.5E-24 1.8E-28 219.6 29.4 278 202-527 49-343 (343)
22 KOG0284 Polyadenylation factor 99.9 2.9E-25 6.3E-30 239.4 17.4 276 68-480 97-379 (464)
23 KOG0273 Beta-transducin family 99.9 1E-23 2.2E-28 231.1 29.5 328 66-481 177-523 (524)
24 KOG0645 WD40 repeat protein [G 99.9 5.6E-23 1.2E-27 211.7 30.3 270 205-528 11-310 (312)
25 KOG0306 WD40-repeat-containing 99.9 7.8E-22 1.7E-26 226.4 41.9 455 25-529 71-664 (888)
26 KOG0276 Vesicle coat complex C 99.9 1.9E-23 4.1E-28 234.9 27.9 306 224-570 61-379 (794)
27 KOG0281 Beta-TrCP (transducin 99.9 7.8E-25 1.7E-29 230.7 15.4 272 132-483 197-479 (499)
28 KOG0273 Beta-transducin family 99.9 9.4E-23 2E-27 223.6 26.4 314 23-420 182-523 (524)
29 KOG0306 WD40-repeat-containing 99.9 2.1E-21 4.5E-26 222.9 38.3 308 145-482 337-665 (888)
30 KOG0295 WD40 repeat-containing 99.9 3.1E-23 6.7E-28 221.2 20.9 264 205-514 105-396 (406)
31 KOG0284 Polyadenylation factor 99.9 1.6E-23 3.5E-28 225.9 18.7 268 223-529 101-380 (464)
32 KOG0266 WD40 repeat-containing 99.9 2.5E-22 5.5E-27 239.8 30.3 267 137-480 166-453 (456)
33 KOG0281 Beta-TrCP (transducin 99.9 9E-24 2E-28 222.7 15.2 255 228-529 205-477 (499)
34 KOG0315 G-protein beta subunit 99.9 1.2E-21 2.5E-26 199.5 29.6 282 32-398 11-305 (311)
35 KOG0295 WD40 repeat-containing 99.9 1.7E-22 3.8E-27 215.5 24.6 238 203-480 145-405 (406)
36 KOG0266 WD40 repeat-containing 99.9 4.4E-22 9.6E-27 237.7 31.1 269 222-528 163-453 (456)
37 KOG0285 Pleiotropic regulator 99.9 4.3E-22 9.4E-27 211.3 24.9 274 205-529 148-439 (460)
38 KOG0315 G-protein beta subunit 99.9 6.4E-22 1.4E-26 201.4 24.2 227 224-484 46-291 (311)
39 PLN00181 protein SPA1-RELATED; 99.9 4.9E-21 1.1E-25 245.2 37.5 228 229-480 544-792 (793)
40 KOG0285 Pleiotropic regulator 99.9 7.1E-22 1.5E-26 209.7 24.0 274 254-569 148-437 (460)
41 KOG1408 WD40 repeat protein [F 99.9 1.9E-20 4.1E-25 212.8 36.7 322 223-571 329-713 (1080)
42 KOG0265 U5 snRNP-specific prot 99.9 2.1E-21 4.6E-26 202.8 25.5 226 206-476 88-332 (338)
43 KOG0278 Serine/threonine kinas 99.9 1.9E-22 4.1E-27 205.0 15.6 236 204-484 55-300 (334)
44 KOG0296 Angio-associated migra 99.9 2.2E-20 4.8E-25 199.7 30.4 316 66-480 63-397 (399)
45 PLN00181 protein SPA1-RELATED; 99.9 2.1E-20 4.5E-25 239.4 35.7 273 221-527 486-791 (793)
46 KOG0293 WD40 repeat-containing 99.9 3E-21 6.4E-26 208.3 23.0 273 25-381 230-513 (519)
47 cd00200 WD40 WD40 domain, foun 99.9 5.4E-20 1.2E-24 202.8 33.1 270 130-479 7-289 (289)
48 KOG0293 WD40 repeat-containing 99.9 3.5E-21 7.7E-26 207.7 22.5 223 224-481 275-513 (519)
49 cd00200 WD40 WD40 domain, foun 99.9 1.2E-19 2.6E-24 200.0 34.2 270 205-527 6-289 (289)
50 KOG0313 Microtubule binding pr 99.9 2.2E-20 4.7E-25 200.5 26.0 270 132-480 105-417 (423)
51 KOG0265 U5 snRNP-specific prot 99.9 2.5E-20 5.3E-25 194.9 25.6 237 254-528 44-295 (338)
52 KOG0296 Angio-associated migra 99.9 9.5E-20 2.1E-24 194.9 30.3 311 222-570 68-397 (399)
53 KOG0275 Conserved WD40 repeat- 99.9 8.2E-22 1.8E-26 206.0 13.5 258 222-516 217-499 (508)
54 KOG0292 Vesicle coat complex C 99.9 1.1E-19 2.4E-24 211.2 32.4 237 206-484 7-283 (1202)
55 KOG0316 Conserved WD40 repeat- 99.9 7.5E-20 1.6E-24 184.9 24.8 254 254-550 14-275 (307)
56 KOG0640 mRNA cleavage stimulat 99.9 1.4E-20 3.1E-25 196.3 19.6 239 203-480 167-425 (430)
57 PTZ00421 coronin; Provisional 99.8 5.4E-19 1.2E-23 210.7 32.0 201 253-485 71-294 (493)
58 KOG0282 mRNA splicing factor [ 99.8 1E-20 2.3E-25 208.7 15.0 254 253-526 210-502 (503)
59 KOG1407 WD40 repeat protein [F 99.8 4.6E-19 1E-23 182.0 25.2 258 204-513 16-289 (313)
60 KOG0313 Microtubule binding pr 99.8 2.2E-19 4.7E-24 192.9 23.5 263 230-528 115-417 (423)
61 KOG0643 Translation initiation 99.8 7.6E-19 1.6E-23 180.8 25.6 253 203-480 5-316 (327)
62 KOG0275 Conserved WD40 repeat- 99.8 4.1E-20 8.9E-25 193.4 15.8 222 226-479 271-507 (508)
63 KOG0277 Peroxisomal targeting 99.8 2.4E-19 5.1E-24 183.4 20.8 200 204-480 100-308 (311)
64 KOG0274 Cdc4 and related F-box 99.8 6.4E-19 1.4E-23 210.3 27.0 268 132-485 208-486 (537)
65 KOG0641 WD40 repeat protein [G 99.8 2.2E-17 4.8E-22 165.6 30.0 264 23-362 36-331 (350)
66 KOG0310 Conserved WD40 repeat- 99.8 3E-18 6.5E-23 189.9 25.1 274 65-476 24-303 (487)
67 KOG0305 Anaphase promoting com 99.8 4.9E-18 1.1E-22 195.6 27.7 267 25-383 183-463 (484)
68 KOG1063 RNA polymerase II elon 99.8 4.7E-16 1E-20 178.3 43.3 303 31-381 25-391 (764)
69 KOG0316 Conserved WD40 repeat- 99.8 2E-18 4.3E-23 174.7 20.9 235 204-484 13-260 (307)
70 KOG0283 WD40 repeat-containing 99.8 2.1E-18 4.5E-23 202.9 24.3 202 203-482 364-577 (712)
71 PTZ00420 coronin; Provisional 99.8 2.2E-17 4.8E-22 197.8 33.4 216 238-484 52-296 (568)
72 KOG2096 WD40 repeat protein [G 99.8 6.4E-18 1.4E-22 177.5 24.8 324 42-477 63-398 (420)
73 KOG0772 Uncharacterized conser 99.8 2.2E-18 4.9E-23 190.8 22.4 289 70-417 170-484 (641)
74 KOG1407 WD40 repeat protein [F 99.8 5.5E-18 1.2E-22 174.1 23.3 254 23-362 24-284 (313)
75 KOG2048 WD40 repeat protein [G 99.8 1.3E-15 2.8E-20 174.8 44.8 409 20-514 26-538 (691)
76 KOG0310 Conserved WD40 repeat- 99.8 8.9E-18 1.9E-22 186.2 25.4 281 206-570 24-308 (487)
77 KOG2096 WD40 repeat protein [G 99.8 9.6E-18 2.1E-22 176.2 23.5 278 23-373 90-392 (420)
78 KOG0973 Histone transcription 99.8 9.5E-18 2.1E-22 201.9 26.6 305 68-484 14-358 (942)
79 PTZ00421 coronin; Provisional 99.8 3E-17 6.6E-22 195.8 30.9 198 204-423 71-293 (493)
80 KOG2106 Uncharacterized conser 99.8 4.9E-16 1.1E-20 172.0 37.7 399 25-480 206-625 (626)
81 KOG0305 Anaphase promoting com 99.8 6.1E-18 1.3E-22 194.8 23.7 245 203-482 201-462 (484)
82 KOG0973 Histone transcription 99.8 1.2E-17 2.5E-22 201.2 25.9 261 222-514 17-345 (942)
83 KOG1539 WD repeat protein [Gen 99.8 1.1E-15 2.5E-20 178.4 40.3 374 134-571 116-564 (910)
84 KOG0288 WD40 repeat protein Ti 99.8 1.7E-18 3.7E-23 187.8 15.5 263 224-526 181-458 (459)
85 KOG1408 WD40 repeat protein [F 99.8 6.1E-17 1.3E-21 184.6 28.7 404 28-482 267-714 (1080)
86 KOG0277 Peroxisomal targeting 99.8 9.5E-18 2.1E-22 171.7 19.9 235 255-527 58-307 (311)
87 KOG0294 WD40 repeat-containing 99.8 4.5E-17 9.7E-22 171.6 24.9 231 205-483 40-283 (362)
88 KOG0274 Cdc4 and related F-box 99.8 5.3E-17 1.2E-21 194.0 28.4 268 254-571 204-482 (537)
89 KOG0640 mRNA cleavage stimulat 99.8 1.2E-17 2.6E-22 174.7 19.7 249 23-336 116-425 (430)
90 KOG1446 Histone H3 (Lys4) meth 99.8 3.6E-16 7.8E-21 165.8 30.9 276 67-419 14-302 (311)
91 KOG2048 WD40 repeat protein [G 99.8 3.3E-15 7.2E-20 171.4 41.0 423 68-571 26-505 (691)
92 KOG1539 WD repeat protein [Gen 99.8 4.5E-16 9.7E-21 181.7 33.8 377 28-479 167-646 (910)
93 KOG0643 Translation initiation 99.8 3.2E-17 6.9E-22 169.0 20.9 279 253-571 6-317 (327)
94 KOG0300 WD40 repeat-containing 99.8 2.6E-17 5.7E-22 172.3 20.2 266 219-510 149-458 (481)
95 KOG0283 WD40 repeat-containing 99.8 1.8E-17 3.9E-22 195.1 21.4 243 255-571 265-576 (712)
96 KOG0308 Conserved WD40 repeat- 99.8 6.3E-18 1.4E-22 192.1 16.7 222 228-482 35-286 (735)
97 KOG1063 RNA polymerase II elon 99.8 9.5E-16 2.1E-20 175.8 33.9 393 68-529 192-699 (764)
98 KOG1274 WD40 repeat protein [G 99.8 8.1E-17 1.8E-21 189.9 25.4 245 65-382 11-263 (933)
99 KOG0282 mRNA splicing factor [ 99.8 7.7E-18 1.7E-22 186.2 15.8 276 126-479 208-503 (503)
100 PTZ00420 coronin; Provisional 99.8 3.4E-16 7.3E-21 187.7 31.3 218 204-464 70-318 (568)
101 KOG0641 WD40 repeat protein [G 99.8 1.5E-15 3.3E-20 152.4 30.3 286 257-570 32-348 (350)
102 KOG0299 U3 snoRNP-associated p 99.8 1.7E-16 3.6E-21 174.8 24.9 267 220-514 144-445 (479)
103 KOG0647 mRNA export protein (c 99.7 1.4E-16 3.1E-21 166.9 22.9 242 256-510 26-309 (347)
104 KOG0288 WD40 repeat protein Ti 99.7 1.8E-17 3.8E-22 180.0 15.7 261 138-478 183-458 (459)
105 KOG0289 mRNA splicing factor [ 99.7 5.5E-16 1.2E-20 169.2 26.4 229 228-488 229-469 (506)
106 KOG0294 WD40 repeat-containing 99.7 4.5E-16 9.7E-21 164.1 23.9 241 254-576 40-286 (362)
107 KOG2919 Guanine nucleotide-bin 99.7 3.3E-16 7.3E-21 165.2 22.3 217 228-473 121-361 (406)
108 KOG0772 Uncharacterized conser 99.7 6.2E-16 1.3E-20 171.7 23.6 285 254-568 164-484 (641)
109 KOG0308 Conserved WD40 repeat- 99.7 1.4E-16 3E-21 181.3 17.1 231 224-479 79-325 (735)
110 KOG0289 mRNA splicing factor [ 99.7 8.5E-16 1.8E-20 167.7 22.1 216 261-512 224-450 (506)
111 KOG1446 Histone H3 (Lys4) meth 99.7 1.1E-14 2.3E-19 154.7 29.7 268 206-528 12-302 (311)
112 KOG0301 Phospholipase A2-activ 99.7 1.7E-15 3.7E-20 173.9 24.8 213 228-485 69-292 (745)
113 KOG0639 Transducin-like enhanc 99.7 7.3E-16 1.6E-20 170.1 20.8 221 223-480 470-703 (705)
114 KOG0268 Sof1-like rRNA process 99.7 2.1E-16 4.6E-21 168.9 15.4 249 254-528 63-344 (433)
115 KOG1332 Vesicle coat complex C 99.7 1.2E-15 2.6E-20 155.6 19.5 238 229-490 22-296 (299)
116 KOG0269 WD40 repeat-containing 99.7 6.3E-16 1.4E-20 179.2 19.5 259 22-358 42-317 (839)
117 KOG2106 Uncharacterized conser 99.7 1.7E-13 3.8E-18 152.1 37.0 402 23-481 158-581 (626)
118 KOG0299 U3 snoRNP-associated p 99.7 2.1E-15 4.5E-20 166.3 21.8 272 254-559 139-443 (479)
119 KOG0301 Phospholipase A2-activ 99.7 4.6E-15 1E-19 170.4 23.7 246 228-529 23-288 (745)
120 KOG2055 WD40 repeat protein [G 99.7 7.7E-15 1.7E-19 161.6 24.4 222 67-362 213-447 (514)
121 KOG1274 WD40 repeat protein [G 99.7 8.3E-15 1.8E-19 173.2 26.3 256 134-506 17-280 (933)
122 KOG1273 WD40 repeat protein [G 99.7 6.9E-15 1.5E-19 154.8 22.5 238 255-529 22-280 (405)
123 KOG0269 WD40 repeat-containing 99.7 2.2E-15 4.8E-20 174.8 19.1 276 68-416 40-336 (839)
124 KOG0300 WD40 repeat-containing 99.7 1.3E-14 2.7E-19 152.4 21.9 236 253-529 144-428 (481)
125 KOG0278 Serine/threonine kinas 99.6 2E-15 4.3E-20 154.2 15.1 277 204-529 10-297 (334)
126 KOG0264 Nucleosome remodeling 99.6 5.2E-14 1.1E-18 155.7 27.1 177 232-420 192-404 (422)
127 KOG0646 WD40 repeat protein [G 99.6 5.2E-15 1.1E-19 163.6 18.9 264 32-361 51-330 (476)
128 KOG1036 Mitotic spindle checkp 99.6 4.6E-14 1E-18 149.1 24.8 239 208-484 13-265 (323)
129 KOG0267 Microtubule severing p 99.6 3.7E-16 8E-21 179.7 9.4 215 227-475 37-261 (825)
130 KOG0647 mRNA export protein (c 99.6 3.6E-14 7.8E-19 149.1 23.3 120 208-346 27-154 (347)
131 KOG0639 Transducin-like enhanc 99.6 4.2E-15 9.1E-20 164.2 17.2 264 25-373 425-693 (705)
132 KOG1332 Vesicle coat complex C 99.6 8.1E-15 1.8E-19 149.7 17.2 252 254-574 8-289 (299)
133 KOG0264 Nucleosome remodeling 99.6 2.2E-14 4.8E-19 158.6 21.8 241 64-362 121-385 (422)
134 KOG4283 Transcription-coupled 99.6 6.3E-14 1.4E-18 146.3 22.8 217 205-485 40-280 (397)
135 KOG0267 Microtubule severing p 99.6 9.5E-16 2.1E-20 176.4 9.8 236 237-512 11-254 (825)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 6.3E-13 1.4E-17 149.7 32.8 280 32-360 2-300 (300)
137 KOG1036 Mitotic spindle checkp 99.6 2.5E-13 5.3E-18 143.7 26.4 267 19-372 11-292 (323)
138 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 5.3E-13 1.2E-17 150.3 31.4 224 224-484 36-282 (300)
139 KOG0646 WD40 repeat protein [G 99.6 5.5E-14 1.2E-18 155.5 21.7 236 231-484 51-310 (476)
140 KOG4283 Transcription-coupled 99.6 1.4E-13 3E-18 143.8 21.8 290 132-480 43-364 (397)
141 KOG0268 Sof1-like rRNA process 99.6 1.2E-14 2.7E-19 155.6 14.2 270 69-382 68-346 (433)
142 KOG1034 Transcriptional repres 99.6 2.2E-13 4.9E-18 144.6 22.4 221 231-481 106-383 (385)
143 KOG2055 WD40 repeat protein [G 99.6 3.1E-13 6.6E-18 149.2 23.5 273 22-379 216-510 (514)
144 KOG2445 Nuclear pore complex c 99.5 8.5E-13 1.8E-17 139.2 21.2 249 224-481 19-318 (361)
145 KOG0650 WD40 repeat nucleolar 99.5 7E-13 1.5E-17 150.0 20.7 295 254-603 397-717 (733)
146 KOG1273 WD40 repeat protein [G 99.5 4.6E-12 1E-16 133.8 23.3 277 6-360 12-303 (405)
147 KOG0303 Actin-binding protein 99.5 1.2E-12 2.5E-17 142.1 18.5 171 304-534 78-254 (472)
148 KOG0302 Ribosome Assembly prot 99.5 6.5E-13 1.4E-17 143.3 16.3 222 63-338 147-379 (440)
149 KOG0270 WD40 repeat-containing 99.5 1.3E-12 2.8E-17 144.0 17.9 222 228-483 190-451 (463)
150 KOG2445 Nuclear pore complex c 99.5 8.2E-12 1.8E-16 131.8 22.3 269 23-337 17-318 (361)
151 COG2319 FOG: WD40 repeat [Gene 99.5 1.6E-09 3.4E-14 125.8 43.9 351 24-482 70-443 (466)
152 KOG1538 Uncharacterized conser 99.4 2.8E-12 6.1E-17 145.9 19.0 233 203-482 48-294 (1081)
153 KOG4328 WD40 protein [Function 99.4 9.9E-12 2.2E-16 137.4 22.6 279 66-417 185-492 (498)
154 KOG4378 Nuclear protein COP1 [ 99.4 7.3E-12 1.6E-16 138.9 21.3 212 259-506 82-303 (673)
155 KOG0307 Vesicle coat complex C 99.4 1.3E-12 2.8E-17 158.7 15.0 200 204-423 112-330 (1049)
156 KOG1445 Tumor-specific antigen 99.4 2.7E-12 5.9E-17 145.3 15.8 235 265-572 588-843 (1012)
157 KOG4328 WD40 protein [Function 99.4 1.5E-11 3.2E-16 136.0 20.5 276 255-568 184-492 (498)
158 KOG1524 WD40 repeat-containing 99.4 2.6E-11 5.7E-16 135.6 22.3 218 71-362 18-239 (737)
159 KOG1538 Uncharacterized conser 99.4 7.5E-12 1.6E-16 142.5 17.8 261 259-571 14-293 (1081)
160 KOG0270 WD40 repeat-containing 99.4 1.2E-11 2.6E-16 136.5 18.4 192 267-483 191-406 (463)
161 COG2319 FOG: WD40 repeat [Gene 99.4 5.3E-09 1.1E-13 121.4 42.0 321 66-487 64-406 (466)
162 KOG0650 WD40 repeat nucleolar 99.4 2.5E-11 5.4E-16 137.7 21.0 204 205-478 518-732 (733)
163 KOG1963 WD40 repeat protein [G 99.4 9.6E-10 2.1E-14 131.0 35.2 295 254-572 202-539 (792)
164 KOG1034 Transcriptional repres 99.4 1.8E-11 4E-16 130.3 18.4 204 255-484 87-340 (385)
165 KOG0302 Ribosome Assembly prot 99.4 1.6E-11 3.4E-16 132.7 18.1 200 254-483 148-380 (440)
166 PF04762 IKI3: IKI3 family; I 99.4 7.3E-07 1.6E-11 114.4 62.9 357 66-482 74-457 (928)
167 KOG1009 Chromatin assembly com 99.4 1.8E-10 3.9E-15 126.1 24.9 130 228-362 23-177 (434)
168 KOG0321 WD40 repeat-containing 99.3 5.3E-11 1.2E-15 136.2 20.8 248 203-483 95-393 (720)
169 KOG0649 WD40 repeat protein [G 99.3 3.4E-10 7.4E-15 116.0 24.1 258 67-382 10-275 (325)
170 KOG1963 WD40 repeat protein [G 99.3 1.6E-09 3.5E-14 129.0 32.7 357 23-483 164-540 (792)
171 KOG0771 Prolactin regulatory e 99.3 2.8E-11 6E-16 133.4 16.6 185 260-507 148-335 (398)
172 KOG0303 Actin-binding protein 99.3 7.7E-11 1.7E-15 128.1 19.5 194 204-421 77-295 (472)
173 KOG0771 Prolactin regulatory e 99.3 3.4E-11 7.3E-16 132.7 17.0 205 21-338 146-355 (398)
174 KOG0307 Vesicle coat complex C 99.3 1.1E-11 2.5E-16 150.6 14.0 246 208-487 64-333 (1049)
175 KOG1009 Chromatin assembly com 99.3 4.4E-10 9.6E-15 123.0 24.6 80 254-342 120-200 (434)
176 KOG2919 Guanine nucleotide-bin 99.3 1.6E-10 3.4E-15 122.8 20.0 228 28-329 120-362 (406)
177 KOG1007 WD repeat protein TSSC 99.3 1.9E-10 4.1E-15 120.5 20.0 247 27-338 71-362 (370)
178 PF04053 Coatomer_WDAD: Coatom 99.3 7.3E-11 1.6E-15 138.6 19.1 337 454-927 34-374 (443)
179 PRK01742 tolB translocation pr 99.3 1.2E-10 2.6E-15 138.9 21.4 234 40-362 184-427 (429)
180 KOG0644 Uncharacterized conser 99.3 9.2E-12 2E-16 145.5 11.0 225 222-480 194-467 (1113)
181 KOG4497 Uncharacterized conser 99.3 1.5E-09 3.2E-14 115.7 25.9 359 22-512 11-420 (447)
182 KOG1007 WD repeat protein TSSC 99.3 6.8E-10 1.5E-14 116.4 22.8 215 257-479 123-358 (370)
183 KOG0642 Cell-cycle nuclear pro 99.3 4E-11 8.6E-16 136.0 13.6 234 223-484 299-564 (577)
184 KOG1517 Guanine nucleotide bin 99.3 6.5E-10 1.4E-14 133.3 24.1 291 71-483 1068-1383(1387)
185 KOG4378 Nuclear protein COP1 [ 99.3 6.6E-10 1.4E-14 123.6 22.5 204 229-464 90-305 (673)
186 PRK11028 6-phosphogluconolacto 99.2 8.2E-09 1.8E-13 119.0 32.6 268 233-529 5-304 (330)
187 KOG0321 WD40 repeat-containing 99.2 5.6E-10 1.2E-14 128.0 21.1 241 253-529 96-391 (720)
188 KOG2394 WD40 protein DMR-N9 [G 99.2 5.7E-10 1.2E-14 125.7 18.5 95 258-362 291-386 (636)
189 KOG0322 G-protein beta subunit 99.2 2.5E-10 5.4E-15 118.4 14.1 269 22-337 17-323 (323)
190 KOG2111 Uncharacterized conser 99.2 5.1E-09 1.1E-13 111.8 23.6 233 25-339 11-258 (346)
191 KOG1188 WD40 repeat protein [G 99.2 1.1E-09 2.4E-14 117.6 18.8 191 80-343 41-248 (376)
192 PRK11028 6-phosphogluconolacto 99.2 1.2E-08 2.6E-13 117.6 28.4 240 223-489 39-314 (330)
193 KOG4227 WD40 repeat protein [G 99.1 1E-09 2.2E-14 118.7 16.7 248 254-528 53-321 (609)
194 KOG1517 Guanine nucleotide bin 99.1 4.4E-09 9.6E-14 126.4 23.5 274 22-362 1067-1363(1387)
195 KOG2110 Uncharacterized conser 99.1 3.7E-08 8.1E-13 107.2 28.5 128 242-382 108-249 (391)
196 KOG1587 Cytoplasmic dynein int 99.1 3.2E-09 7E-14 126.6 21.5 263 18-339 241-518 (555)
197 PRK01742 tolB translocation pr 99.1 3.6E-09 7.7E-14 126.3 21.9 208 222-463 207-426 (429)
198 KOG0649 WD40 repeat protein [G 99.1 1.7E-08 3.7E-13 103.8 22.2 239 136-419 16-273 (325)
199 KOG0644 Uncharacterized conser 99.1 9.5E-11 2.1E-15 137.2 6.8 214 253-483 186-428 (1113)
200 KOG1524 WD40 repeat-containing 99.1 2.6E-09 5.6E-14 120.0 17.0 166 269-471 76-245 (737)
201 KOG2110 Uncharacterized conser 99.1 3.4E-08 7.3E-13 107.5 24.5 231 24-339 10-250 (391)
202 KOG0322 G-protein beta subunit 99.0 9.7E-09 2.1E-13 106.8 17.8 134 233-379 168-321 (323)
203 PRK03629 tolB translocation pr 99.0 2E-08 4.3E-13 119.8 23.4 233 41-361 180-428 (429)
204 KOG1240 Protein kinase contain 99.0 6.3E-08 1.4E-12 118.7 27.2 217 71-347 1052-1283(1431)
205 KOG1188 WD40 repeat protein [G 99.0 5.4E-09 1.2E-13 112.4 16.0 186 269-484 41-245 (376)
206 KOG1310 WD40 repeat protein [G 99.0 4E-09 8.6E-14 118.8 15.1 162 305-481 48-231 (758)
207 KOG4227 WD40 repeat protein [G 99.0 3.8E-08 8.2E-13 106.8 20.8 248 228-486 115-392 (609)
208 PF08662 eIF2A: Eukaryotic tra 99.0 2.5E-08 5.4E-13 105.4 19.4 115 208-341 59-183 (194)
209 KOG0642 Cell-cycle nuclear pro 99.0 4.2E-09 9.2E-14 119.8 13.9 240 254-528 291-560 (577)
210 KOG1445 Tumor-specific antigen 99.0 3.2E-09 7E-14 120.9 12.9 103 229-340 639-753 (1012)
211 PF08662 eIF2A: Eukaryotic tra 99.0 3.6E-08 7.8E-13 104.1 20.1 98 257-373 59-162 (194)
212 KOG1587 Cytoplasmic dynein int 99.0 2.9E-08 6.3E-13 118.6 21.5 231 229-482 254-517 (555)
213 KOG2394 WD40 protein DMR-N9 [G 98.9 1.5E-08 3.3E-13 114.4 16.1 123 209-340 281-455 (636)
214 KOG2139 WD40 repeat protein [G 98.9 2.6E-07 5.7E-12 100.1 24.7 256 71-392 102-367 (445)
215 KOG1523 Actin-related protein 98.9 7E-08 1.5E-12 103.2 19.9 237 223-489 15-287 (361)
216 KOG1523 Actin-related protein 98.9 6.8E-08 1.5E-12 103.3 19.4 235 258-514 11-268 (361)
217 PRK05137 tolB translocation pr 98.9 3.5E-07 7.6E-12 109.5 28.0 196 253-487 197-418 (435)
218 KOG1240 Protein kinase contain 98.9 1.5E-07 3.2E-12 115.5 24.3 269 204-483 1034-1336(1431)
219 PRK03629 tolB translocation pr 98.9 2.9E-07 6.3E-12 109.8 24.9 207 220-462 200-427 (429)
220 PRK04922 tolB translocation pr 98.9 1.2E-07 2.6E-12 113.4 21.4 232 41-360 185-432 (433)
221 KOG0290 Conserved WD40 repeat- 98.8 7.7E-08 1.7E-12 101.4 15.8 208 64-338 93-319 (364)
222 KOG2321 WD40 repeat protein [G 98.8 4.7E-07 1E-11 103.3 23.1 130 257-391 175-312 (703)
223 KOG2139 WD40 repeat protein [G 98.8 7.4E-08 1.6E-12 104.3 15.9 187 261-481 103-309 (445)
224 PRK02889 tolB translocation pr 98.8 6.6E-07 1.4E-11 106.8 25.6 97 254-362 192-295 (427)
225 KOG0290 Conserved WD40 repeat- 98.8 6.4E-07 1.4E-11 94.6 21.4 185 254-483 93-320 (364)
226 KOG2111 Uncharacterized conser 98.8 6.4E-06 1.4E-10 88.5 28.6 87 267-362 147-238 (346)
227 KOG1310 WD40 repeat protein [G 98.8 8E-08 1.7E-12 108.6 14.9 121 203-338 45-179 (758)
228 KOG2315 Predicted translation 98.8 2E-06 4.3E-11 98.6 25.9 99 256-373 269-373 (566)
229 PRK04922 tolB translocation pr 98.8 1.1E-06 2.4E-11 105.2 25.6 205 241-483 185-413 (433)
230 PF02239 Cytochrom_D1: Cytochr 98.8 3.4E-05 7.4E-10 89.8 36.7 294 211-531 29-349 (369)
231 KOG1272 WD40-repeat-containing 98.8 1.5E-08 3.3E-13 112.6 8.0 221 219-479 130-360 (545)
232 PRK02889 tolB translocation pr 98.7 1.1E-06 2.3E-11 105.0 24.3 171 224-409 201-389 (427)
233 KOG1272 WD40-repeat-containing 98.7 3.2E-08 6.9E-13 110.2 10.1 213 64-361 127-345 (545)
234 KOG4497 Uncharacterized conser 98.7 2.1E-06 4.6E-11 92.0 21.0 286 222-528 12-390 (447)
235 PRK05137 tolB translocation pr 98.7 2.6E-06 5.7E-11 102.1 24.0 170 221-406 204-392 (435)
236 PF15492 Nbas_N: Neuroblastoma 98.6 6E-06 1.3E-10 88.3 22.1 71 26-99 4-75 (282)
237 KOG2006 WD40 repeat protein [G 98.6 3.5E-08 7.6E-13 120.0 5.7 86 974-1059 903-991 (1023)
238 PF04762 IKI3: IKI3 family; I 98.6 8.4E-05 1.8E-09 95.7 35.7 216 206-487 73-339 (928)
239 TIGR02800 propeller_TolB tol-p 98.6 5.9E-06 1.3E-10 98.5 23.9 184 253-474 185-386 (417)
240 PRK04792 tolB translocation pr 98.6 8.9E-06 1.9E-10 97.6 25.3 213 68-360 218-446 (448)
241 KOG1912 WD40 repeat protein [G 98.6 2.9E-05 6.3E-10 91.7 27.5 470 6-572 4-552 (1062)
242 KOG4547 WD40 repeat-containing 98.6 6.8E-06 1.5E-10 95.1 22.2 161 229-401 4-192 (541)
243 PF02239 Cytochrom_D1: Cytochr 98.6 2.6E-05 5.7E-10 90.7 27.7 283 25-389 42-355 (369)
244 PF10282 Lactonase: Lactonase, 98.6 0.0008 1.7E-08 78.1 39.9 71 260-337 147-222 (345)
245 KOG0974 WD-repeat protein WDR6 98.5 1.5E-06 3.2E-11 106.0 17.1 140 228-382 143-289 (967)
246 TIGR02658 TTQ_MADH_Hv methylam 98.5 5E-05 1.1E-09 86.6 27.6 77 261-347 252-340 (352)
247 PF10282 Lactonase: Lactonase, 98.5 0.00038 8.2E-09 80.8 35.7 268 23-342 40-329 (345)
248 KOG1354 Serine/threonine prote 98.5 6E-06 1.3E-10 89.3 17.9 259 68-348 26-313 (433)
249 COG2706 3-carboxymuconate cycl 98.5 0.0003 6.5E-09 77.6 30.7 210 260-529 92-321 (346)
250 KOG1334 WD40 repeat protein [G 98.5 1.7E-06 3.6E-11 97.4 13.5 292 204-528 138-465 (559)
251 KOG4547 WD40 repeat-containing 98.5 4.6E-06 9.9E-11 96.4 17.3 209 76-338 2-221 (541)
252 PRK01029 tolB translocation pr 98.5 2.6E-05 5.6E-10 93.0 24.6 126 224-361 286-425 (428)
253 PRK00178 tolB translocation pr 98.4 4E-05 8.7E-10 91.8 26.3 116 254-385 195-323 (430)
254 COG5354 Uncharacterized protei 98.4 0.0001 2.2E-09 84.0 26.0 93 255-362 272-371 (561)
255 KOG1334 WD40 repeat protein [G 98.4 2.6E-06 5.6E-11 95.9 12.7 288 128-421 138-467 (559)
256 PRK01029 tolB translocation pr 98.4 5.8E-05 1.3E-09 89.9 24.3 132 223-362 189-338 (428)
257 KOG0974 WD-repeat protein WDR6 98.4 7.5E-06 1.6E-10 100.0 16.6 144 263-423 140-291 (967)
258 KOG1354 Serine/threonine prote 98.3 6.1E-05 1.3E-09 81.7 20.9 275 23-339 29-361 (433)
259 TIGR02800 propeller_TolB tol-p 98.3 0.00014 3.1E-09 86.5 26.5 207 279-528 171-396 (417)
260 KOG2321 WD40 repeat protein [G 98.3 8.4E-05 1.8E-09 85.5 22.5 238 254-529 48-302 (703)
261 PRK04792 tolB translocation pr 98.3 0.0001 2.2E-09 88.6 24.9 116 255-386 215-343 (448)
262 KOG3881 Uncharacterized conser 98.3 3.3E-05 7.1E-10 85.3 18.0 143 232-387 163-326 (412)
263 KOG3881 Uncharacterized conser 98.3 4E-05 8.8E-10 84.6 17.9 216 28-318 113-342 (412)
264 PRK00178 tolB translocation pr 98.2 0.00017 3.7E-09 86.4 24.4 150 222-387 202-369 (430)
265 KOG2314 Translation initiation 98.2 0.00056 1.2E-08 78.6 25.2 307 21-375 212-558 (698)
266 KOG2315 Predicted translation 98.1 0.00032 6.9E-09 81.0 22.5 70 261-341 316-394 (566)
267 KOG1409 Uncharacterized conser 98.1 0.00021 4.6E-09 77.8 19.9 240 70-384 27-273 (404)
268 KOG2041 WD40 repeat protein [G 98.1 0.00082 1.8E-08 79.0 25.8 218 66-336 13-246 (1189)
269 KOG4532 WD40-like repeat conta 98.1 0.00023 4.9E-09 75.1 19.4 208 71-341 71-286 (344)
270 PF00400 WD40: WD domain, G-be 98.1 7.4E-06 1.6E-10 62.1 6.1 38 290-335 2-39 (39)
271 COG2706 3-carboxymuconate cycl 98.1 0.013 2.9E-07 65.0 33.4 249 33-337 6-274 (346)
272 KOG2314 Translation initiation 98.1 0.002 4.4E-08 74.2 27.6 305 223-560 215-556 (698)
273 KOG1409 Uncharacterized conser 98.1 0.00033 7.2E-09 76.3 19.5 231 224-484 30-273 (404)
274 PF15492 Nbas_N: Neuroblastoma 98.0 0.0016 3.5E-08 70.0 23.9 219 262-487 3-269 (282)
275 KOG3914 WD repeat protein WDR4 98.0 4.3E-05 9.4E-10 84.8 12.3 99 239-346 131-232 (390)
276 PRK04043 tolB translocation pr 98.0 0.0006 1.3E-08 80.9 23.0 68 262-340 324-403 (419)
277 COG4946 Uncharacterized protei 98.0 0.0049 1.1E-07 69.8 28.1 135 208-362 359-500 (668)
278 KOG2041 WD40 repeat protein [G 98.0 0.00033 7.2E-09 82.1 18.5 148 205-362 11-168 (1189)
279 PLN02919 haloacid dehalogenase 97.9 0.005 1.1E-07 81.2 29.8 117 223-341 744-892 (1057)
280 TIGR02658 TTQ_MADH_Hv methylam 97.8 0.024 5.3E-07 65.0 30.9 276 40-389 27-338 (352)
281 KOG4532 WD40-like repeat conta 97.8 0.0012 2.7E-08 69.7 18.3 199 233-489 131-339 (344)
282 KOG0309 Conserved WD40 repeat- 97.8 4.7E-05 1E-09 89.4 8.6 201 204-421 110-340 (1081)
283 KOG0280 Uncharacterized conser 97.8 0.0011 2.4E-08 71.0 17.4 201 71-339 73-286 (339)
284 KOG0280 Uncharacterized conser 97.8 0.0016 3.4E-08 69.9 18.5 113 213-338 126-242 (339)
285 TIGR03300 assembly_YfgL outer 97.8 0.024 5.2E-07 66.6 31.0 248 267-568 104-376 (377)
286 KOG1064 RAVE (regulator of V-A 97.8 0.00014 2.9E-09 93.2 12.2 184 134-390 2210-2407(2439)
287 KOG3914 WD repeat protein WDR4 97.7 0.00024 5.2E-09 79.1 12.3 78 306-388 150-230 (390)
288 PRK04043 tolB translocation pr 97.7 0.0045 9.8E-08 73.5 24.1 90 261-362 192-288 (419)
289 PLN02919 haloacid dehalogenase 97.7 0.0092 2E-07 78.7 29.0 247 223-484 572-891 (1057)
290 PF04841 Vps16_N: Vps16, N-ter 97.7 0.022 4.8E-07 67.5 29.7 246 22-340 31-290 (410)
291 PF11768 DUF3312: Protein of u 97.7 0.0036 7.9E-08 73.6 22.3 75 256-341 258-333 (545)
292 KOG1920 IkappaB kinase complex 97.7 0.012 2.6E-07 74.0 27.5 241 68-339 69-324 (1265)
293 KOG4190 Uncharacterized conser 97.7 8.9E-05 1.9E-09 84.2 8.3 176 254-484 732-909 (1034)
294 KOG1064 RAVE (regulator of V-A 97.7 0.00019 4.1E-09 91.9 11.7 182 255-482 2206-2399(2439)
295 PF06433 Me-amine-dh_H: Methyl 97.6 0.028 6.2E-07 63.1 25.7 258 25-349 41-332 (342)
296 PF00400 WD40: WD domain, G-be 97.6 0.00014 2.9E-09 55.1 5.4 35 445-479 4-39 (39)
297 TIGR03300 assembly_YfgL outer 97.6 0.024 5.2E-07 66.7 27.0 143 269-423 191-341 (377)
298 KOG1912 WD40 repeat protein [G 97.6 0.012 2.6E-07 70.5 23.2 116 261-388 20-150 (1062)
299 KOG4190 Uncharacterized conser 97.5 0.0006 1.3E-08 77.6 10.9 173 128-346 731-915 (1034)
300 COG5354 Uncharacterized protei 97.5 0.041 8.9E-07 63.4 25.1 268 224-528 38-347 (561)
301 COG5170 CDC55 Serine/threonine 97.3 0.0013 2.9E-08 70.5 10.4 265 64-348 23-321 (460)
302 KOG1645 RING-finger-containing 97.3 0.013 2.8E-07 65.6 18.0 76 254-339 190-268 (463)
303 KOG3621 WD40 repeat-containing 97.3 0.005 1.1E-07 73.3 15.9 114 222-338 37-155 (726)
304 KOG2066 Vacuolar assembly/sort 97.2 0.0062 1.3E-07 73.4 16.1 189 257-528 39-232 (846)
305 COG4946 Uncharacterized protei 97.2 0.027 5.9E-07 64.0 20.0 123 254-391 356-487 (668)
306 KOG4714 Nucleoporin [Nuclear s 97.2 0.0048 1E-07 65.2 12.6 152 306-482 88-255 (319)
307 KOG2695 WD40 repeat protein [G 97.2 0.0015 3.3E-08 71.3 9.1 120 258-390 253-385 (425)
308 PF00930 DPPIV_N: Dipeptidyl p 97.1 0.1 2.3E-06 60.7 24.7 61 28-97 1-71 (353)
309 KOG0309 Conserved WD40 repeat- 97.1 0.0044 9.6E-08 73.5 12.7 214 223-465 29-258 (1081)
310 KOG2114 Vacuolar assembly/sort 97.0 0.095 2.1E-06 64.1 22.8 134 258-401 126-264 (933)
311 PF08450 SGL: SMP-30/Gluconola 97.0 0.49 1.1E-05 51.9 27.4 92 261-359 138-233 (246)
312 PF07433 DUF1513: Protein of u 97.0 0.15 3.2E-06 56.9 22.4 61 255-327 214-276 (305)
313 KOG1920 IkappaB kinase complex 97.0 0.33 7.1E-06 61.8 27.5 65 259-333 71-135 (1265)
314 KOG4640 Anaphase-promoting com 96.9 0.0026 5.7E-08 74.8 8.7 73 261-343 25-98 (665)
315 KOG4714 Nucleoporin [Nuclear s 96.9 0.0037 8E-08 66.0 8.9 74 258-339 180-256 (319)
316 COG5170 CDC55 Serine/threonine 96.8 0.014 3E-07 63.0 12.5 223 258-488 27-316 (460)
317 PF04053 Coatomer_WDAD: Coatom 96.8 0.41 9E-06 57.0 26.4 108 761-923 298-412 (443)
318 PF04841 Vps16_N: Vps16, N-ter 96.8 0.9 1.9E-05 54.0 29.2 70 451-528 215-286 (410)
319 PF07433 DUF1513: Protein of u 96.8 0.18 3.9E-06 56.2 21.3 94 261-362 9-110 (305)
320 KOG4640 Anaphase-promoting com 96.7 0.0063 1.4E-07 71.7 9.8 76 209-292 21-97 (665)
321 PRK11138 outer membrane biogen 96.6 2 4.4E-05 50.7 30.7 67 268-347 120-188 (394)
322 KOG2066 Vacuolar assembly/sort 96.6 0.013 2.7E-07 70.9 11.2 149 134-347 41-197 (846)
323 KOG3617 WD40 and TPR repeat-co 96.3 0.029 6.3E-07 67.7 11.7 69 260-337 63-131 (1416)
324 KOG1832 HIV-1 Vpr-binding prot 96.2 0.0035 7.7E-08 75.5 3.9 196 130-391 1099-1301(1516)
325 smart00320 WD40 WD40 repeats. 96.2 0.013 2.8E-07 42.1 5.6 30 306-335 11-40 (40)
326 KOG2695 WD40 repeat protein [G 96.2 0.014 3E-07 64.1 7.7 111 228-347 262-386 (425)
327 PF00930 DPPIV_N: Dipeptidyl p 96.1 1.7 3.6E-05 50.7 25.6 75 21-97 44-131 (353)
328 KOG0882 Cyclophilin-related pe 96.1 0.031 6.8E-07 63.3 10.4 202 229-486 19-236 (558)
329 PF13360 PQQ_2: PQQ-like domai 96.1 0.75 1.6E-05 49.8 21.3 110 266-389 34-148 (238)
330 KOG1832 HIV-1 Vpr-binding prot 96.0 0.0051 1.1E-07 74.2 3.6 188 254-482 1098-1292(1516)
331 PF08450 SGL: SMP-30/Gluconola 96.0 3.3 7.2E-05 45.3 28.1 128 226-362 7-145 (246)
332 KOG2114 Vacuolar assembly/sort 95.8 1.6 3.5E-05 53.9 23.6 80 257-346 171-252 (933)
333 KOG3621 WD40 repeat-containing 95.7 1.8 3.8E-05 52.5 22.7 101 261-373 38-143 (726)
334 PRK11138 outer membrane biogen 95.7 4.5 9.7E-05 47.8 27.0 74 269-345 206-282 (394)
335 PF11768 DUF3312: Protein of u 95.6 0.28 6.1E-06 58.2 15.9 78 257-340 206-292 (545)
336 KOG1275 PAB-dependent poly(A) 95.4 0.21 4.5E-06 61.5 14.3 190 268-494 147-353 (1118)
337 KOG3617 WD40 and TPR repeat-co 95.4 0.073 1.6E-06 64.4 10.3 105 261-381 20-131 (1416)
338 PF14783 BBS2_Mid: Ciliary BBS 95.4 0.41 9E-06 45.1 13.0 92 228-332 12-109 (111)
339 COG0823 TolB Periplasmic compo 94.6 0.58 1.2E-05 55.6 15.0 65 26-98 199-269 (425)
340 KOG1897 Damage-specific DNA bi 94.6 18 0.0004 45.9 36.0 81 67-163 530-616 (1096)
341 KOG2079 Vacuolar assembly/sort 94.5 0.1 2.2E-06 65.3 8.5 75 266-348 97-171 (1206)
342 PF13360 PQQ_2: PQQ-like domai 94.4 4.4 9.5E-05 43.7 20.6 183 229-423 35-233 (238)
343 KOG0882 Cyclophilin-related pe 94.4 0.84 1.8E-05 52.3 14.5 124 223-347 101-241 (558)
344 smart00320 WD40 WD40 repeats. 94.4 0.067 1.5E-06 38.1 4.2 34 446-479 6-40 (40)
345 KOG1008 Uncharacterized conser 94.4 0.016 3.5E-07 68.2 1.2 204 258-529 57-275 (783)
346 PF00780 CNH: CNH domain; Int 94.3 11 0.00023 42.0 25.9 63 266-340 5-67 (275)
347 PF08596 Lgl_C: Lethal giant l 94.2 8.7 0.00019 45.3 23.4 236 70-347 4-300 (395)
348 KOG2079 Vacuolar assembly/sort 94.2 0.59 1.3E-05 58.9 14.0 72 257-336 130-202 (1206)
349 PF06977 SdiA-regulated: SdiA- 94.1 5.4 0.00012 43.8 20.1 125 208-338 21-148 (248)
350 KOG1275 PAB-dependent poly(A) 94.1 1.1 2.3E-05 55.7 15.4 92 239-336 245-341 (1118)
351 COG3490 Uncharacterized protei 93.8 6.8 0.00015 42.9 19.1 68 452-529 279-348 (366)
352 COG0823 TolB Periplasmic compo 93.7 0.87 1.9E-05 54.1 13.9 93 226-328 289-390 (425)
353 PRK02888 nitrous-oxide reducta 93.6 2.6 5.7E-05 51.5 17.6 105 222-327 324-451 (635)
354 PF12894 Apc4_WD40: Anaphase-p 93.3 0.22 4.7E-06 39.5 5.4 34 307-340 11-44 (47)
355 PF08596 Lgl_C: Lethal giant l 93.3 2.7 5.8E-05 49.5 16.9 67 267-339 271-337 (395)
356 PRK02888 nitrous-oxide reducta 92.4 3.2 6.9E-05 50.8 16.1 98 316-421 285-405 (635)
357 PRK13616 lipoprotein LpqB; Pro 92.1 5.7 0.00012 49.4 18.4 108 222-333 353-472 (591)
358 KOG4441 Proteins containing BT 92.0 6.1 0.00013 49.1 18.6 67 461-528 473-545 (571)
359 PF12894 Apc4_WD40: Anaphase-p 91.9 0.41 8.9E-06 37.9 5.3 29 258-286 12-41 (47)
360 PF14783 BBS2_Mid: Ciliary BBS 91.6 6.5 0.00014 37.2 13.8 61 263-336 9-70 (111)
361 PF15390 DUF4613: Domain of un 91.2 18 0.00038 43.7 19.8 60 261-327 343-404 (671)
362 KOG4649 PQQ (pyrrolo-quinoline 90.8 27 0.00059 37.8 26.0 83 267-360 62-145 (354)
363 PF10647 Gmad1: Lipoprotein Lp 90.8 29 0.00062 38.3 20.6 95 258-362 25-123 (253)
364 COG3204 Uncharacterized protei 89.8 37 0.0008 37.7 21.6 176 206-401 83-262 (316)
365 COG3391 Uncharacterized conser 89.7 49 0.0011 39.0 23.6 110 261-386 78-195 (381)
366 PF10168 Nup88: Nuclear pore c 89.5 12 0.00025 47.6 17.9 76 25-100 90-182 (717)
367 PF02897 Peptidase_S9_N: Proly 89.5 52 0.0011 39.0 27.0 206 310-572 126-356 (414)
368 PRK13616 lipoprotein LpqB; Pro 88.6 26 0.00056 43.7 19.8 91 258-362 350-459 (591)
369 KOG1897 Damage-specific DNA bi 87.0 1E+02 0.0023 39.6 38.1 80 261-345 588-667 (1096)
370 PF11635 Med16: Mediator compl 85.7 57 0.0012 42.1 21.2 71 261-332 264-345 (753)
371 PF12657 TFIIIC_delta: Transcr 85.6 2.8 6E-05 43.4 7.8 30 69-98 87-122 (173)
372 PF02897 Peptidase_S9_N: Proly 84.6 94 0.002 36.8 34.7 57 261-328 128-190 (414)
373 PF03178 CPSF_A: CPSF A subuni 83.6 87 0.0019 35.7 26.1 67 261-333 177-261 (321)
374 PF08553 VID27: VID27 cytoplas 83.2 18 0.00039 46.0 14.7 121 240-370 504-634 (794)
375 PF15390 DUF4613: Domain of un 82.8 88 0.0019 38.1 18.9 113 25-163 62-187 (671)
376 PF08553 VID27: VID27 cytoplas 82.6 7.6 0.00016 49.3 11.1 93 232-336 544-646 (794)
377 KOG2444 WD40 repeat protein [G 82.3 4.5 9.7E-05 43.0 7.5 100 230-338 70-178 (238)
378 KOG2280 Vacuolar assembly/sort 81.6 85 0.0018 39.2 18.6 49 42-99 66-114 (829)
379 cd00216 PQQ_DH Dehydrogenases 80.8 1.4E+02 0.0031 36.3 30.4 72 269-347 111-193 (488)
380 PF10647 Gmad1: Lipoprotein Lp 80.6 32 0.00068 38.0 14.1 102 210-327 25-131 (253)
381 PF12234 Rav1p_C: RAVE protein 80.3 13 0.00027 46.1 11.6 83 6-96 18-103 (631)
382 KOG1008 Uncharacterized conser 80.1 0.9 2E-05 54.2 1.7 141 222-379 72-223 (783)
383 KOG2377 Uncharacterized conser 80.0 32 0.00069 40.2 13.6 72 23-100 26-99 (657)
384 COG3386 Gluconolactonase [Carb 79.6 1.2E+02 0.0026 34.6 19.0 89 232-327 39-130 (307)
385 KOG3630 Nuclear pore complex, 79.3 18 0.0004 46.5 12.5 74 454-528 200-281 (1405)
386 PF10168 Nup88: Nuclear pore c 77.9 38 0.00083 43.1 15.1 81 259-339 86-181 (717)
387 KOG1898 Splicing factor 3b, su 77.7 2.3E+02 0.0051 36.9 29.2 76 20-100 538-621 (1205)
388 KOG1645 RING-finger-containing 77.6 10 0.00023 43.3 8.9 73 304-381 190-266 (463)
389 COG3391 Uncharacterized conser 77.2 1.5E+02 0.0032 34.9 19.2 108 224-342 79-195 (381)
390 PF06433 Me-amine-dh_H: Methyl 76.7 1.5E+02 0.0032 34.1 28.2 127 278-420 17-165 (342)
391 PF00780 CNH: CNH domain; Int 76.6 1.3E+02 0.0027 33.3 26.4 61 29-98 5-65 (275)
392 PF03178 CPSF_A: CPSF A subuni 76.0 1.5E+02 0.0032 33.8 19.1 177 278-481 2-202 (321)
393 TIGR02604 Piru_Ver_Nterm putat 76.0 66 0.0014 37.6 15.8 66 258-326 73-142 (367)
394 PF12234 Rav1p_C: RAVE protein 75.3 29 0.00063 43.1 12.7 105 224-336 35-155 (631)
395 KOG2444 WD40 repeat protein [G 74.6 8.9 0.00019 40.8 7.0 73 268-348 70-143 (238)
396 PF10313 DUF2415: Uncharacteri 73.7 8.6 0.00019 29.8 4.9 30 453-482 1-34 (43)
397 PF11715 Nup160: Nucleoporin N 73.1 14 0.00031 45.7 9.8 40 307-346 214-257 (547)
398 PF07995 GSDH: Glucose / Sorbo 71.4 1E+02 0.0022 35.6 15.5 26 367-392 174-202 (331)
399 KOG2395 Protein involved in va 71.1 51 0.0011 39.4 12.5 118 239-362 355-483 (644)
400 COG3490 Uncharacterized protei 70.7 1E+02 0.0023 34.1 13.9 66 257-335 279-346 (366)
401 KOG3630 Nuclear pore complex, 69.9 16 0.00034 47.1 8.6 69 261-338 160-229 (1405)
402 COG3386 Gluconolactonase [Carb 69.7 2.1E+02 0.0045 32.7 20.2 91 261-358 167-262 (307)
403 KOG2377 Uncharacterized conser 68.4 2.5E+02 0.0055 33.2 19.0 35 306-340 65-99 (657)
404 TIGR02604 Piru_Ver_Nterm putat 68.3 1.5E+02 0.0032 34.7 16.3 96 257-362 14-135 (367)
405 PF06977 SdiA-regulated: SdiA- 68.1 1.9E+02 0.0042 31.8 22.5 209 22-274 24-239 (248)
406 KOG4441 Proteins containing BT 68.1 2.5E+02 0.0054 35.0 18.9 68 459-528 423-498 (571)
407 PF10313 DUF2415: Uncharacteri 67.2 12 0.00026 29.0 4.4 31 68-98 1-34 (43)
408 KOG2280 Vacuolar assembly/sort 66.8 1.5E+02 0.0034 37.1 15.8 52 278-340 64-115 (829)
409 PF07676 PD40: WD40-like Beta 65.5 11 0.00024 28.1 4.1 28 67-94 8-38 (39)
410 PF14655 RAB3GAP2_N: Rab3 GTPa 64.1 20 0.00044 42.3 7.8 96 261-359 6-117 (415)
411 PHA03098 kelch-like protein; P 63.4 2.6E+02 0.0056 34.5 18.0 28 463-490 487-520 (534)
412 PHA02713 hypothetical protein; 63.3 2.1E+02 0.0045 35.7 16.9 27 463-489 512-541 (557)
413 PF07676 PD40: WD40-like Beta 63.0 19 0.00042 26.7 5.0 23 451-473 7-29 (39)
414 KOG4499 Ca2+-binding protein R 62.9 1.4E+02 0.003 32.3 12.6 94 261-359 162-262 (310)
415 PF12341 DUF3639: Protein of u 62.7 12 0.00026 25.9 3.3 24 70-95 4-27 (27)
416 PLN00033 photosystem II stabil 61.0 3.4E+02 0.0073 32.2 17.2 131 224-362 244-382 (398)
417 KOG4649 PQQ (pyrrolo-quinoline 60.8 2.6E+02 0.0057 30.7 27.9 20 463-483 333-353 (354)
418 PRK10115 protease 2; Provision 60.1 4.7E+02 0.01 33.5 23.9 32 309-340 128-164 (686)
419 PF14781 BBS2_N: Ciliary BBSom 58.7 1.9E+02 0.0042 28.5 14.2 114 263-388 5-132 (136)
420 TIGR03606 non_repeat_PQQ dehyd 58.0 2.2E+02 0.0047 34.3 15.0 48 221-268 32-90 (454)
421 COG5290 IkappaB kinase complex 57.5 1.9E+02 0.0042 36.3 14.2 31 69-99 114-144 (1243)
422 KOG2395 Protein involved in va 56.5 53 0.0012 39.2 9.2 91 234-336 398-499 (644)
423 TIGR03074 PQQ_membr_DH membran 56.3 5.6E+02 0.012 33.2 22.8 77 268-346 260-353 (764)
424 PRK13684 Ycf48-like protein; P 55.0 3.8E+02 0.0083 30.8 21.1 123 208-345 172-295 (334)
425 PF11134 Phage_stabilise: Phag 54.6 4E+02 0.0088 31.5 15.6 76 257-337 89-164 (469)
426 PF14655 RAB3GAP2_N: Rab3 GTPa 54.2 48 0.001 39.3 8.6 81 261-346 312-407 (415)
427 KOG1900 Nuclear pore complex, 53.4 2.6E+02 0.0055 37.5 15.2 110 38-162 97-209 (1311)
428 PRK13684 Ycf48-like protein; P 53.0 4.1E+02 0.0089 30.6 19.9 117 258-388 173-294 (334)
429 PHA02790 Kelch-like protein; P 52.7 5E+02 0.011 31.5 17.9 64 461-528 405-469 (480)
430 PF14761 HPS3_N: Hermansky-Pud 52.5 3.2E+02 0.007 29.2 15.0 45 320-370 29-75 (215)
431 PF07569 Hira: TUP1-like enhan 52.0 72 0.0016 34.4 9.0 74 264-339 18-97 (219)
432 KOG4460 Nuclear pore complex, 51.2 1.2E+02 0.0027 36.2 10.9 34 309-342 167-203 (741)
433 KOG1916 Nuclear protein, conta 50.0 18 0.00038 45.5 4.3 113 138-287 191-324 (1283)
434 PF12657 TFIIIC_delta: Transcr 49.8 88 0.0019 32.2 9.0 33 307-339 85-123 (173)
435 KOG4460 Nuclear pore complex, 49.3 69 0.0015 38.2 8.6 76 25-100 109-201 (741)
436 PHA03098 kelch-like protein; P 48.8 4E+02 0.0087 32.7 16.3 68 460-528 434-510 (534)
437 KOG1062 Vesicle coat complex A 48.5 76 0.0016 39.9 9.2 163 757-934 177-402 (866)
438 KOG1983 Tomosyn and related SN 46.8 6.1E+02 0.013 34.0 17.9 26 316-341 243-268 (993)
439 KOG4659 Uncharacterized conser 46.4 7E+02 0.015 33.7 17.0 65 261-326 597-680 (1899)
440 PF05694 SBP56: 56kDa selenium 45.6 6E+02 0.013 30.3 18.6 194 268-483 87-344 (461)
441 cd00216 PQQ_DH Dehydrogenases 45.5 6.4E+02 0.014 30.7 26.6 75 269-347 62-138 (488)
442 PF10214 Rrn6: RNA polymerase 43.5 7.8E+02 0.017 32.0 18.1 101 260-361 149-257 (765)
443 TIGR03075 PQQ_enz_alc_DH PQQ-d 43.1 7.3E+02 0.016 30.6 19.1 70 269-347 121-199 (527)
444 PHA02713 hypothetical protein; 41.7 7.8E+02 0.017 30.6 19.3 63 461-528 461-532 (557)
445 KOG1916 Nuclear protein, conta 41.5 84 0.0018 39.9 8.1 76 263-342 242-328 (1283)
446 PF14781 BBS2_N: Ciliary BBSom 39.4 3.9E+02 0.0085 26.4 12.0 68 267-346 63-134 (136)
447 PF07569 Hira: TUP1-like enhan 38.7 1.3E+02 0.0028 32.4 8.5 74 22-98 13-96 (219)
448 PF07995 GSDH: Glucose / Sorbo 38.6 6.6E+02 0.014 28.8 28.9 71 256-331 252-329 (331)
449 KOG0783 Uncharacterized conser 38.0 6.4E+02 0.014 32.3 14.5 114 223-342 189-316 (1267)
450 PF05096 Glu_cyclase_2: Glutam 37.3 6.2E+02 0.013 28.1 21.2 190 258-473 45-251 (264)
451 PF14761 HPS3_N: Hermansky-Pud 35.6 1.1E+02 0.0024 32.6 7.0 45 275-328 35-80 (215)
452 KOG1898 Splicing factor 3b, su 35.4 1.2E+03 0.026 30.9 26.8 49 523-572 914-963 (1205)
453 PF13449 Phytase-like: Esteras 34.3 6.3E+02 0.014 28.9 13.8 118 209-328 20-167 (326)
454 COG3204 Uncharacterized protei 33.3 7.5E+02 0.016 27.9 19.0 129 254-401 82-211 (316)
455 COG4590 ABC-type uncharacteriz 33.3 2.4E+02 0.0052 33.3 9.5 30 69-99 222-251 (733)
456 PF14870 PSII_BNR: Photosynthe 33.1 7.7E+02 0.017 28.0 30.5 118 258-389 145-268 (302)
457 PF11715 Nup160: Nucleoporin N 33.0 1.5E+02 0.0033 36.6 9.1 35 261-296 219-257 (547)
458 PHA02790 Kelch-like protein; P 32.3 9.9E+02 0.021 29.0 17.5 27 462-488 445-477 (480)
459 PF12768 Rax2: Cortical protei 31.6 3.7E+02 0.008 30.2 10.8 95 474-571 17-121 (281)
460 PF13432 TPR_16: Tetratricopep 31.2 1.6E+02 0.0035 24.2 6.3 59 872-932 5-63 (65)
461 TIGR03606 non_repeat_PQQ dehyd 31.1 9.2E+02 0.02 29.1 14.6 63 255-319 28-90 (454)
462 PF08728 CRT10: CRT10; InterP 31.1 3E+02 0.0065 35.0 10.7 73 258-336 164-245 (717)
463 KOG4499 Ca2+-binding protein R 30.2 2.8E+02 0.0062 30.0 8.8 47 261-316 216-262 (310)
464 TIGR02276 beta_rpt_yvtn 40-res 29.5 1.3E+02 0.0029 22.2 4.9 31 317-347 1-32 (42)
465 PLN00033 photosystem II stabil 29.2 1E+03 0.022 28.2 21.6 113 261-389 243-363 (398)
466 PF13964 Kelch_6: Kelch motif 28.6 80 0.0017 24.8 3.7 32 459-490 7-45 (50)
467 PF05096 Glu_cyclase_2: Glutam 28.4 8.5E+02 0.019 27.0 13.4 108 226-346 52-166 (264)
468 PF14870 PSII_BNR: Photosynthe 26.8 9.8E+02 0.021 27.2 25.4 250 206-488 14-268 (302)
469 KOG1983 Tomosyn and related SN 26.4 1E+03 0.022 32.0 15.1 42 447-488 229-271 (993)
470 PF01417 ENTH: ENTH domain; I 26.2 3.3E+02 0.0072 26.3 8.3 83 826-912 22-121 (125)
471 cd07357 HN_L-whirlin_R2_like S 25.7 81 0.0018 27.9 3.3 50 978-1038 4-56 (81)
472 PF14583 Pectate_lyase22: Olig 25.5 1.2E+03 0.025 27.6 27.4 73 263-342 42-115 (386)
473 PF01344 Kelch_1: Kelch motif; 25.3 1.2E+02 0.0027 23.2 4.2 31 459-489 7-44 (47)
474 PF04840 Vps16_C: Vps16, C-ter 25.1 4.3E+02 0.0093 30.3 10.1 70 841-923 210-285 (319)
475 PF14727 PHTB1_N: PTHB1 N-term 24.8 1.2E+03 0.027 27.7 31.5 278 268-570 37-359 (418)
476 PF03378 CAS_CSE1: CAS/CSE pro 24.3 3.5E+02 0.0076 32.5 9.5 110 789-929 156-270 (435)
477 KOG4659 Uncharacterized conser 24.1 2E+03 0.043 29.9 16.3 18 71-88 596-613 (1899)
478 PF14559 TPR_19: Tetratricopep 22.7 2E+02 0.0043 23.7 5.4 57 874-932 1-57 (68)
479 PF05694 SBP56: 56kDa selenium 21.4 1.2E+03 0.026 27.9 12.6 100 239-338 221-343 (461)
480 COG4257 Vgb Streptogramin lyas 21.4 1.2E+03 0.025 26.2 20.0 229 223-488 66-312 (353)
481 PF10395 Utp8: Utp8 family; I 21.1 1.8E+03 0.038 28.1 17.8 30 452-481 129-159 (670)
482 TIGR03075 PQQ_enz_alc_DH PQQ-d 20.7 1.6E+03 0.035 27.6 15.2 30 318-347 471-500 (527)
483 PF13418 Kelch_4: Galactose ox 20.3 1.2E+02 0.0026 23.6 3.2 28 461-488 10-44 (49)
484 PF11090 DUF2833: Protein of u 20.1 83 0.0018 28.4 2.3 32 457-488 2-33 (86)
485 PF04910 Tcf25: Transcriptiona 20.1 6.8E+02 0.015 29.2 10.6 64 853-924 99-163 (360)
No 1
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.6e-100 Score=898.49 Aligned_cols=827 Identities=33% Similarity=0.442 Sum_probs=664.6
Q ss_pred cCCcEEEEEecCCceEeeeccccceecCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCC
Q 001202 228 SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT 307 (1124)
Q Consensus 228 ~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~ 307 (1124)
.||+......+....+.-.....+. .--++++|++++..++++|+|...|.+.+|+.+...+.........++ ++
T Consensus 121 sD~q~a~~~~n~~~~~~t~~i~~~~-~l~~DAvc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~----~t 195 (1023)
T KOG2006|consen 121 SDGQAAQLLLNHQGFKYTESIGAWK-PLGGDAVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDT----LT 195 (1023)
T ss_pred ccchhhhhhcccccchhhhhhhhhc-cccccceeeeccchhhhheecccccceeehhhhhhccceeeecccCcc----cc
Confidence 7887766555543333222222211 233688899999999999999999999999987633333333333334 56
Q ss_pred CCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEE
Q 001202 308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYA 387 (1124)
Q Consensus 308 g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~ 387 (1124)
-++.-+.|+|+++.++.++..|...+|+..++..+.+.............|+|.......+-.+......|...+..++.
T Consensus 196 i~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~~~ms~v~~~~~ts~~~~~f~~~~~l~e~~~~s~~~~~q~~e~~~~L~~ 275 (1023)
T KOG2006|consen 196 VPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGNILMLPVKKLELTSKVVLKFNPLIIMKGEPTFSKVGAIQWEEVGIVLFP 275 (1023)
T ss_pred ccccccCcCCccceeeeeecccceEEecccccccccchhhhhccchhhhccCcceeeecccccCccchhhccceeeeeec
Confidence 68999999999999999999999999999999877776654344555666666543333444445577778888877776
Q ss_pred EecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCC---CccceeeecccceeeccCCCceEEEEEccCC
Q 001202 388 IEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSED---TDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (1124)
Q Consensus 388 ~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~---~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG 464 (1124)
........+..+..... ..- .++........++.++.+....+ .+...|.++++|.+|...+|||++++.++||
T Consensus 276 ~~~~~~~~~~~~~s~sc-~~~--S~~~~~~~~l~~d~~~l~~~~~~~s~~~~~~w~~~~~P~~y~ssnwpiry~s~~~dg 352 (1023)
T KOG2006|consen 276 HGEQILTISDFKVSKSC-LVE--SKTIVCRAQLMGDSHDLVSKATDVSITDIEKWDHLALPLTYTSSNWPIRYVSIDYDG 352 (1023)
T ss_pred ccccccchhheeecccc-ccc--ccceeechhhccchhhhhhhhccccccchhhhheeecccccccccCceeEEeecCCc
Confidence 54332222211111111 110 22222223344444444443333 4456899999999999999999999999999
Q ss_pred CEEEEEcCCCeEEEEcCCCcEEEecCcCceeeeEEEE-EEecCCEEEEEEEecCCCeEEEEEeeCC-CCCCcceEEEeec
Q 001202 465 MFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKG-LLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSL 542 (1124)
Q Consensus 465 ~~lAvag~dG~vlwd~~sg~wk~f~~~~~e~~~~v~g-l~W~~~~liv~~~~~~~~~~elrly~~~-~ld~~~~l~~~~l 542 (1124)
.++|+||..|.++|+..+++||.|+++.||+.+.|+| +.|+++++++||+...+..+++++|+++ ++|+. +.+....
T Consensus 353 ~~lavAgl~gla~y~~~~~~Wk~f~~~sqEq~i~vtg~liW~~~f~v~~~~~~~~~~~~L~fy~~~~~~dn~-~a~k~~~ 431 (1023)
T KOG2006|consen 353 KHLAVAGLHGLARYSLSSKRWKLFGDESQEQNINVTGGLIWWDDFVVHGCVEEGNRTFELYFYPRDYNLDNN-LAHKSAA 431 (1023)
T ss_pred cEEEEeecccceEEEeecceeecCCccchhhceecceeeEEecceEEEEEEeecCceeeeEecccccccchh-hccchhh
Confidence 9999999999999999999999999999999999885 9999999999999999999999999998 66664 4444433
Q ss_pred CCccEEEEeeCCEEEEEEcCCeEEEEEEEEecccCCCCCCcEEEEEEEEEeeeccccCCceEEEccCCCccccccCCCCC
Q 001202 543 LAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVS 622 (1124)
Q Consensus 543 ~s~~l~l~~~~~~llv~~~d~~i~l~~~~~~~~~~~~~~~~i~l~~~~~i~i~~~~~hp~~v~~i~~~~~~~~~~~~~~~ 622 (1124)
...+..+.+.++.+++++.|+.+.+|++..+. ...+.+..+++++++.++.||++|++++.+.|++....+ .+
T Consensus 432 ~~~~~d~v~~~~~livitad~~~~~~~~~~~s------~t~l~~~~~~~~~~~~i~thP~~ivs~t~t~~~l~~i~~-~~ 504 (1023)
T KOG2006|consen 432 SAKVSDLVCVDYSLIVITADGKYQHWELWRNS------QTQLDLENVTEVSIVLINTHPACIVSLTVTSPSLANIGN-DN 504 (1023)
T ss_pred hhhhhheeeecceeEEEEecceEEEEEeccch------hhccccceeeEEEEEeecCCCcEEEEeeccCccccccCc-cc
Confidence 34444556777888889999999999887433 456788899999999999999999999998876432111 11
Q ss_pred CcccccccCCceeEEEeeCCEEEEEecCC-------CcceeeccceeEEEEcCCCCcccccccceeeEEEECCCC-----
Q 001202 623 TSSDMLAREPARCLILRANGELSLLDLDD-------GRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRG----- 690 (1124)
Q Consensus 623 ~~~~~~~~~~~~~lil~~~g~l~~l~~~~-------~~~~~l~~~VE~~w~~~~~~~~~~~~~~~~~~~~~~~~g----- 690 (1124)
.+.+ ..+....+|.+.++.... ..+..++.+||++|++. +. . ...+.+..|+.+|..|
T Consensus 505 -l~~~------~~~~~~~~n~i~~l~~~~~~~~~~~~~~~~la~~Ve~~~~~s-s~-~-~~~~~d~~Wl~~g~~~~~~~~ 574 (1023)
T KOG2006|consen 505 -LQFY------KSITVTFNNLIGRLIINSSLRDGALYQENKLASLVENFWLNS-SF-E-DQQVLDLHWLGDGANGCHMKN 574 (1023)
T ss_pred -hhHh------hhhhhhhcchhheeehhhhccchhhhhhhhhhhhHHHeecCc-HH-h-hhhhhhceeeccCCCcccccc
Confidence 1111 222333455555544321 24578999999999883 22 2 2345577899999999
Q ss_pred cEEe---------ecC-----CCCCCCCcccccccCCcccccCceeeeeeccCCcEEEEEeeeeeeccCc-----Cccce
Q 001202 691 MQVW---------YPS-----PGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACT-----EFPCF 751 (1124)
Q Consensus 691 ~~vw---------~~~-----~~~~~~~~~~~~~~~~~l~~~~~~yPl~i~~~~~~i~G~~~~~~~~~~~-----~~~~~ 751 (1124)
|+.| ++. .+.+.+..++|.++++|++|++++|||.++++++++.|++|+.....+. .+++.
T Consensus 575 ~~g~~~~l~~~~~~~~g~~~~~~~~~~~~~sF~~k~~ml~f~l~~Ypl~~l~~~~~~~gv~~~~~l~asa~~~~~~~~f~ 654 (1023)
T KOG2006|consen 575 MDGCPNHLCLALWLSEGNVWDLVMDAYRVPSFLSKRIMLPFTLNIYPLVLLKNVNLVLGVEQEDALLASAEIILFTLTFD 654 (1023)
T ss_pred ccCCccccccceeecccchhhcccccccCchhhhhccccccchhhceeeeecccceeeeccchhhhhhhccccccccchH
Confidence 6554 443 3456778889999999999999999999999999999999986654333 34444
Q ss_pred eccCcccccHHHHHH--HHHhcccHHHHHHHHHHcCCCCCchHHHHHHHHHHhhcccccccccccccCCccccchhhhHH
Q 001202 752 EPTPQAQTILHCLLR--HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLE 829 (1124)
Q Consensus 752 ~~~~~~~~~L~~il~--~ll~~~~~~~a~~~a~~~~~l~~F~h~LE~lLh~vle~e~~~~~~~~~~~~i~~~~~~~~ll~ 829 (1124)
-..++|++|+|.+++ ++|+||.++.|+.+|+.|+.+|||+|+||+|||+|||+|+++++| ||| ++||
T Consensus 655 v~~~~h~~~l~~i~~l~q~lkrnl~~~aLllaq~~a~~p~f~h~le~ll~~Vle~e~ts~~p------~~d-----~~l~ 723 (1023)
T KOG2006|consen 655 VQERLHQIYLHIILHLYQLLKRNLGEDALLLAQECAILPHFTHALELLLHFVLEEEATSSEP------IPD-----KLLP 723 (1023)
T ss_pred HhhhhhhhHHHHHHHHHHHHHhhccHHHHHhHHHHHhcccchHHHHHHHHHHHHHhhcCCCC------ccc-----hhHH
Confidence 456889999999999 999999999999999999999999999999999999999999875 887 7999
Q ss_pred HHHHHhHcCchhHHHHHhhcccccccchHHHHhhcCChHHHHHHHHhcCcHHHHhhHHhhhhhccCchhhHHHHHHHHHH
Q 001202 830 KTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQA 909 (1124)
Q Consensus 830 ~v~~fi~~f~~~l~ivv~caRKtE~~~W~~LF~~~g~P~~Lf~~cl~~~~l~taa~yLivl~n~e~~~~~~~~a~~Ll~~ 909 (1124)
++++||++||+|+++|||||||||.++|++||+++|.|+||||+||++.+++|||+||||+||+|++++++++|++|+++
T Consensus 724 ~i~d~I~eFp~fl~~vv~caRKTe~~lW~~lF~~~G~PkdLfe~Clqt~~~~tAA~~Liilqnle~savs~~~a~~L~q~ 803 (1023)
T KOG2006|consen 724 KIIDFIREFPEFLKTVVNCARKTEAALWPDLFSAVGIPKDLFEECLQTEDLDTAASYLIILQNLEGSAVSVQHALRLLQL 803 (1023)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHhcCCcHHHHHHHhhccchhhhceeeeeeeccccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccHhHHHHHHHhhhccccccccCCCCCCCCCCcccceeecCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhh
Q 001202 910 TLDECLYELAGELVRFLLRSGREYEQASTDSDKLSPRFLGYFLFPSSYRRPSLDKSTSFKEQSPNVASVKNILESHASYL 989 (1124)
Q Consensus 910 al~~~~w~l~~eL~RFl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~l 989 (1124)
||++++||+|+||+|||++|||+..+.|+- ..++.+.+.+|.|++.++.++..+......|++.|+..+
T Consensus 804 aL~~~kwdl~~Elirfl~~i~p~~~~~~~~-----------~~~~~~~~~~s~d~~~~f~~~~~~~~~~~~~~~~~~s~~ 872 (1023)
T KOG2006|consen 804 ALEEKKWDLAKELIRFLRSIGPEKIDLPTK-----------LIATPTLRSPSLDKSLEFIDQRNNVLSEHAILESVHSSM 872 (1023)
T ss_pred HHHhhcchhHHHHHHHHHhcCcchhhccch-----------hccCccccCccchhhhHHHHhhccccccccccCCccchh
Confidence 999999999999999999999998766541 122345677888888888888777777888999999999
Q ss_pred hcccchhhHHHHHhccCCChHHHhhhcCccccccccHHHHHHHHhhhcccccccccccHHHHHHhhcccccchHHHHHHH
Q 001202 990 MSGKELSKLVAFVKGTQFDLVEYLQREGRVCARLENFASGLELIGQKLQMGTLQSRLDAEFLLAHMCSVKFKEWIVVLAT 1069 (1124)
Q Consensus 990 ~~~~~l~~l~~f~~~~~f~~~~~l~~e~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1124)
++....-.+..+.++..++.-. +--++..+|...-++..|+.++.++++.+|++.||.+.+.+|.++.++
T Consensus 873 ~s~~~~~~~~~~~~g~~~~~~~----------~~~~~~~~l~~~i~~~l~~ha~~lL~~~~l~dlg~~~~~l~f~l~~~l 942 (1023)
T KOG2006|consen 873 LSIQKNCKRKSGTKGWNHDKTN----------LKQTPRDRLALCIDEILARHARVLLLNFLLLDLGCFGADLHFKLVSLL 942 (1023)
T ss_pred hccccccccccCCCCcccchhh----------cccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcceeehhhh
Confidence 9999999999999999987765 667888999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHhccCHHHHHHHHHhhccchhHHhHHHHHHHHH
Q 001202 1070 LLRRSEVLFDLFRHDMRLWEAYAITLQSYPAFAEYHDLLEALD 1112 (1124)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1112 (1124)
..+|.++...-+..+.+.|.+|..+|..+-.||+|.|...+.+
T Consensus 943 ~~er~~~~~~~~~~~~~~~l~~~~~l~l~~~~a~~~~~~~~~g 985 (1023)
T KOG2006|consen 943 TEERKRAADNDTFKSELSVLHEDFDLELPLKVAQLLDTSQING 985 (1023)
T ss_pred HHHHHHHhcCchhhhHHHHHHHhhccccchhhHhhcchHhhcc
Confidence 9999999999999999999999999999999999999999887
No 2
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=100.00 E-value=4e-65 Score=549.37 Aligned_cols=247 Identities=40% Similarity=0.640 Sum_probs=224.9
Q ss_pred eeeEEEECCCCcEEeecCCCC--CCCCcccccccCCcccccCceeeeeeccCCcEEEEEeeeeeeccCcCccceeccCcc
Q 001202 680 EVSWLDYGYRGMQVWYPSPGV--DPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQA 757 (1124)
Q Consensus 680 ~~~~~~~~~~g~~vw~~~~~~--~~~~~~~~~~~~~~l~~~~~~yPl~i~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~ 757 (1124)
+.+|+.||++||+||+|+.+. .....+.+.+.+++++ .|+|||+|++++|+++|+++++..+++.++|++++.+++
T Consensus 4 ~~lW~~~g~~~~~vW~~~~~~~~~~~~~~~~~~~~i~l~--~d~yPlsil~~~gii~Gv~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T PF07064_consen 4 DSLWLFCGAQGMKVWLPVFPVSPASSDSHSFLSKRIMLP--SDFYPLSILSEKGIILGVEQDTSQRRSSSFPFFKFEIKT 81 (258)
T ss_pred cceehhcCcccceeecccccccccccccccccccCccCC--ccccceEEEcCCcEEEEEEEEeeccCCcCccceEeecCc
Confidence 456666666999999999876 2334444555555555 999999999999999999999988888999999999999
Q ss_pred cccHHHHHHHHHhcccHHHHHHHHHHcCCCCCchHHHHHHHHHHhhcccccccccccccCCccccchhhhHHHHHHHhHc
Q 001202 758 QTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRN 837 (1124)
Q Consensus 758 ~~~L~~il~~ll~~~~~~~a~~~a~~~~~l~~F~h~LE~lLh~vle~e~~~~~~~~~~~~i~~~~~~~~ll~~v~~fi~~ 837 (1124)
|+|||+||+++|++|.+.+|++|+++|+++|||+||||+|||+|||+|++.+.++ +++ +++||+|++||++
T Consensus 82 ~l~L~~iL~~lL~~~~~~~a~~i~~~y~~l~~F~~~LE~LLh~vL~~e~~~~~~~----~~~-----~~~L~~v~~ll~~ 152 (258)
T PF07064_consen 82 QLFLHHILRHLLRRNLDEEALEIASKYRSLPYFSHALELLLHTVLEEEADSSEDS----PIP-----DALLPRVISLLQE 152 (258)
T ss_pred eechHHHHHHHHhcCCcHHHHHHHHHhccCCCcHHHHHHHHHHHHhhcccccccc----cch-----HHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999875321 223 3899999999999
Q ss_pred CchhHHHHHhhcccccccchHHHHhhcCChHHHHHHHHhcCcHHHHhhHHhhhhhccCchh-----hHHHHHHHHHHHHh
Q 001202 838 FPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAV-----SQYSALRLLQATLD 912 (1124)
Q Consensus 838 f~~~l~ivv~caRKtE~~~W~~LF~~~g~P~~Lf~~cl~~~~l~taa~yLivl~n~e~~~~-----~~~~a~~Ll~~al~ 912 (1124)
||+|++||||||||||+++|++||+++|+|+|||++||++|+++|||+||||+||+|+.+. ++++|++||++|++
T Consensus 153 f~~~l~Ivv~C~RKtE~~~W~~LF~~lg~P~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~ 232 (258)
T PF07064_consen 153 FPEYLEIVVNCARKTEVRYWPYLFDYLGSPRDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALE 232 (258)
T ss_pred CcchHHHHHHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred cccHhHHHHHHHhhhccccccccCC
Q 001202 913 ECLYELAGELVRFLLRSGREYEQAS 937 (1124)
Q Consensus 913 ~~~w~l~~eL~RFl~~~~~~~~~~~ 937 (1124)
+++||||+||+|||++||+++++++
T Consensus 233 ~~~w~Lc~eL~RFL~~ld~~~~~l~ 257 (258)
T PF07064_consen 233 SGDWDLCFELVRFLKALDPEGNTLP 257 (258)
T ss_pred cccHHHHHHHHHHHHHhCcccCcCC
Confidence 9999999999999999999988664
No 3
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-38 Score=352.15 Aligned_cols=630 Identities=16% Similarity=0.174 Sum_probs=433.6
Q ss_pred hcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEE--EeecCCe
Q 001202 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKH 144 (1124)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~d~~~ 144 (1124)
...+.+|.|-|--..+..+-.+|.+.||+.++... +.+ +...+.+|.+ +..-.+-
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm-------------Vks----------feV~~~PvRa~kfiaRknW 69 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM-------------VKS----------FEVSEVPVRAAKFIARKNW 69 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEeccccee-------------eee----------eeecccchhhheeeeccce
Confidence 35578999999999999999999999999875321 011 1111222322 3333466
Q ss_pred EEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEE
Q 001202 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1124)
Q Consensus 145 llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~ 224 (1124)
+++|++|..|+++..+.. ..|..++.+++...++
T Consensus 70 iv~GsDD~~IrVfnynt~----------------------------------------------ekV~~FeAH~DyIR~i 103 (794)
T KOG0276|consen 70 IVTGSDDMQIRVFNYNTG----------------------------------------------EKVKTFEAHSDYIRSI 103 (794)
T ss_pred EEEecCCceEEEEecccc----------------------------------------------eeeEEeeccccceeee
Confidence 888999999998865532 2344555666666777
Q ss_pred EEecCCcEEEEEecCCceEeeecccc----ceecCCCCeE-EEEEccC-CCEEEEEecCCeEEEEEcCCCCceeEEEeec
Q 001202 225 VLYSNGQLMSCSVSKKGLKLAEFIKI----DKELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1124)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~wd~~~~----~~~~gh~~~v-~va~spd-g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~ 298 (1124)
+++|.-.+++++++|.++++|+.... +...||+.-| +++|||+ ...+|++|-|+||+||.+.. ..+..++.
T Consensus 104 avHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~-- 180 (794)
T KOG0276|consen 104 AVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLE-- 180 (794)
T ss_pred eecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCceeee--
Confidence 88888999999999999999987643 1237999999 9999995 67899999999999999987 77778888
Q ss_pred cCCCCCCCCCCeEEEEECCCC--CEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---
Q 001202 299 DWGYSMDDTGPVSCIAWTPDN--SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (1124)
Q Consensus 299 ~~g~~~~h~g~V~~lawSPDG--~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~--- 373 (1124)
| |..+|+||.+-|-| -+|+||++|.+++|||..+..|+.||.|| .+.|+.+.|+|.- ..++||+
T Consensus 181 --g----HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH-t~Nvs~v~fhp~l----piiisgsEDG 249 (794)
T KOG0276|consen 181 --G----HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH-TNNVSFVFFHPEL----PIIISGSEDG 249 (794)
T ss_pred --c----cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc-cccceEEEecCCC----cEEEEecCCc
Confidence 6 99999999998865 49999999999999999999999999999 8899999999987 8889998
Q ss_pred eEEEEeCCCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCCeE-------EEee-cCCCccc-----
Q 001202 374 SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRL-------LVVQ-SEDTDEL----- 437 (1124)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l-------~l~~-~~~~~~~----- 437 (1124)
++++|+..++++-.+..-.-+++|++.. .+.++.|...|.+.+ .+..++..+ ++.. ..+....
T Consensus 250 TvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~ 328 (794)
T KOG0276|consen 250 TVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSV 328 (794)
T ss_pred cEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecCCccEEEEcCceeeeeeceec
Confidence 9999999999987776655678887774 233444444443322 221111110 0110 0000000
Q ss_pred -----eeeecccce--eeccCCCc-eEEEEEccCCCEEEEEcCCCeEEEEcCCCcEEEecCcCceeeeEEEEEEecCCEE
Q 001202 438 -----KILHLNLPV--SYISQNWP-VQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKII 509 (1124)
Q Consensus 438 -----~w~~~~~p~--~~~~~~~~-I~~va~SpdG~~lAvag~dG~vlwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~l 509 (1124)
.-+-..+|. .-++...- -..++-||+|++++++|....++|....-|-|.||. ...+.|..+--
T Consensus 329 ~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~RnK~fG~--------~~eFvw~~dsn 400 (794)
T KOG0276|consen 329 GAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRNKAFGS--------GLEFVWAADSN 400 (794)
T ss_pred cCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehhhccccc--------ceeEEEcCCCC
Confidence 000001111 11121111 135788999999999998888899987767677753 34578865522
Q ss_pred EEEEEecCCCeEEEEEeeCCCCCCcceEEEeecCCccEEEEeeCCEEEEEEcCCeEEEEEEEEecccCCCCCCcEEEEEE
Q 001202 510 VVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTV 589 (1124)
Q Consensus 510 iv~~~~~~~~~~elrly~~~~ld~~~~l~~~~l~s~~l~l~~~~~~llv~~~d~~i~l~~~~~~~~~~~~~~~~i~l~~~ 589 (1124)
..+.+ +....+.+| +. +-....+..+......+++.|+...+++.+++|+++ ++. .+
T Consensus 401 e~avR---es~~~vki~-kn------fke~ksi~~~~~~e~i~gg~Llg~~ss~~~~fydW~-~~~------------lV 457 (794)
T KOG0276|consen 401 EFAVR---ESNGNVKIF-KN------FKEHKSIRPDMSAEGIFGGPLLGVRSSDFLCFYDWE-SGE------------LV 457 (794)
T ss_pred eEEEE---ecCCceEEE-ec------ceeccccccccceeeecCCceEEEEeCCeEEEEEcc-cce------------EE
Confidence 22212 222356666 41 222222333334556788999998999999999997 232 37
Q ss_pred EEEeeeccccCCceEEEccCCCccccccCCCCCCcccccccCCceeEEEeeCCEEEEEecCCC----------cceeecc
Q 001202 590 RELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDG----------RERELTD 659 (1124)
Q Consensus 590 ~~i~i~~~~~hp~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~~~g~l~~l~~~~~----------~~~~l~~ 659 (1124)
|+|.+. ...|.|. +.+..+++.....++||.+|-+.+.-..+.+ .-.+|.+
T Consensus 458 rrI~v~--------~k~v~w~-----------d~g~lVai~~d~Sfyil~~n~d~v~~a~e~g~~v~eeGiedAfevLgE 518 (794)
T KOG0276|consen 458 RRIEVT--------SKHVYWS-----------DNGELVAIAGDDSFYILKFNADAVANAVEQGIEVTEEGIEDAFEVLGE 518 (794)
T ss_pred EEEeec--------cceeEEe-----------cCCCEEEEEecCceeEEEecHHHHHHHHhcCCCCcchhHHHHHHHHhh
Confidence 778765 2223332 1123334444445777777766654332222 1146777
Q ss_pred ceeEEEEcCCCCcccccccceeeEEEECCCCcEEeecCCCCCCCCcccccccCCcccccCceeeeeeccCCcEEEEEeee
Q 001202 660 SVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQR 739 (1124)
Q Consensus 660 ~VE~~w~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~yPl~i~~~~~~i~G~~~~ 739 (1124)
.-|++ ..+.|..++ ++|+....|+.|.+++. ...+..++..+|-||..+++..++-.+.+
T Consensus 519 ~sE~v--~tg~WvgD~--------fiytts~nrlnY~vgGe----------~~~v~h~~~~mylLgy~~~~~rvYL~Dke 578 (794)
T KOG0276|consen 519 VSESV--KTGKWVGDC--------FIYTTSNNRLNYLVGGE----------TYTVAHLDRIMYLLGYVANDNRVYLHDKE 578 (794)
T ss_pred hhhhe--eeceeeeeE--------EEEeecccceeEEcCCc----------eEEEEEeccchhheeeeecCCEEEEeecc
Confidence 77773 334455554 88999999999887766 34566788899999999999999999987
Q ss_pred eeecc-CcCccceeccCcccccHHHHHHHHHhcccHHHHHHHHHHcCCCCCchHHHHHHHHHHhhcccccccccccccCC
Q 001202 740 MSFSA-CTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISI 818 (1124)
Q Consensus 740 ~~~~~-~~~~~~~~~~~~~~~~L~~il~~ll~~~~~~~a~~~a~~~~~l~~F~h~LE~lLh~vle~e~~~~~~~~~~~~i 818 (1124)
+.+-+ +..+.++++ +.++.|++.+.|-.+. | .|
T Consensus 579 ~nVi~y~l~l~vley------------qt~vmrrd~~~a~~vL-----------------------------p-----~I 612 (794)
T KOG0276|consen 579 LNVISYKILLEVLEY------------QTLVLRRDLEVADGVL-----------------------------P-----TI 612 (794)
T ss_pred cceEeEeeehHHHHH------------HHHhhhcccccccccc-----------------------------c-----cC
Confidence 54321 223334444 3467777766665331 1 46
Q ss_pred ccccchhhhHHHHHHHhHcCchhHHHHHhhcccccccchHHHHhhcCChHHHHHHHHhcCcHHHHhhHHhhhhhccCchh
Q 001202 819 PKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAV 898 (1124)
Q Consensus 819 ~~~~~~~~ll~~v~~fi~~f~~~l~ivv~caRKtE~~~W~~LF~~~g~P~~Lf~~cl~~~~l~taa~yLivl~n~e~~~~ 898 (1124)
|. +...+++.|++.. +|.|-..+.+-..+.+ ||.+|+.|+|++|...+. ++.
T Consensus 613 ~k-----~~rt~va~Fle~~-g~~e~AL~~s~D~d~r---------------Felal~lgrl~iA~~la~-------e~~ 664 (794)
T KOG0276|consen 613 PK-----EIRTKVAHFLESQ-GMKEQALELSTDPDQR---------------FELALKLGRLDIAFDLAV-------EAN 664 (794)
T ss_pred ch-----hhhhhHHhHhhhc-cchHhhhhcCCChhhh---------------hhhhhhcCcHHHHHHHHH-------hhc
Confidence 65 7889999999876 7777777666666666 999999999999999877 566
Q ss_pred hHHHHHHHHHHHHhcccHhHHHHHHH
Q 001202 899 SQYSALRLLQATLDECLYELAGELVR 924 (1124)
Q Consensus 899 ~~~~a~~Ll~~al~~~~w~l~~eL~R 924 (1124)
+.+++.+|.+.|+..++..||.|-..
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~ 690 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFL 690 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHH
Confidence 78999999999999999999999753
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.8e-35 Score=310.82 Aligned_cols=345 Identities=15% Similarity=0.150 Sum_probs=282.8
Q ss_pred EcCCcEEEEecCCCceeEEEEeeChHHHhhhc-ceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcce
Q 001202 37 ASPCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFF 115 (1124)
Q Consensus 37 ~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G-~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~ 115 (1124)
.+.+.|.|-+..|--..+....|...++..|+ .+.++.|||||+.||+|+.|.++||||+.+.....
T Consensus 84 ~te~~l~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~------------ 151 (480)
T KOG0271|consen 84 STEDVLTLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF------------ 151 (480)
T ss_pred chhheeeEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce------------
Confidence 34456665555333334555677777887665 57899999999999999999999999998643211
Q ss_pred eeEEEEeeeeeecccccceEEE--EeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccc
Q 001202 116 IKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASV 193 (1124)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~v~~--i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~ 193 (1124)
..+++..-|.| ++||++.|+.|+.||.|.+ |+..++..+.
T Consensus 152 -----------t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l--wdpktg~~~g------------------------- 193 (480)
T KOG0271|consen 152 -----------TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL--WDPKTGQQIG------------------------- 193 (480)
T ss_pred -----------eecCCccEEEEEEECCCcchhhccccCCeEEE--ecCCCCCccc-------------------------
Confidence 22334444544 6689999999999999987 7877665431
Q ss_pred cCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCC
Q 001202 194 DTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQ 269 (1124)
Q Consensus 194 ~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~ 269 (1124)
..+.+|+..|++++|.|. -..|.++.+++++.|+++++||...+.+. .||+.+| |+.|--+|
T Consensus 194 --------~~l~gH~K~It~Lawep~-----hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g- 259 (480)
T KOG0271|consen 194 --------RALRGHKKWITALAWEPL-----HLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG- 259 (480)
T ss_pred --------ccccCcccceeEEeeccc-----ccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-
Confidence 135688999999999874 23488899999999999999998876554 7999999 99987665
Q ss_pred EEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEEC-----------CCCC------------------
Q 001202 270 ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT-----------PDNS------------------ 320 (1124)
Q Consensus 270 lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawS-----------PDG~------------------ 320 (1124)
+|++|+.|++|++|+..+ +.+.+.++ | |...|+.++.| |.|.
T Consensus 260 liySgS~DrtIkvw~a~d-G~~~r~lk----G----HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~ 330 (480)
T KOG0271|consen 260 LIYSGSQDRTIKVWRALD-GKLCRELK----G----HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA 330 (480)
T ss_pred eEEecCCCceEEEEEccc-hhHHHhhc----c----cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence 899999999999999988 88888888 6 99999998877 3344
Q ss_pred -------EEEEEECCCcEEEEEcCC-CeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEe
Q 001202 321 -------AFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE 389 (1124)
Q Consensus 321 -------~Lasgs~Dg~I~vWdv~~-~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~ 389 (1124)
.|++|++|.++.+|+.+. .+++..+.|| ..-|+.+.||||+ .+++|++ ++++|+..+++.+.+.
T Consensus 331 ~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~V~fSPd~----r~IASaSFDkSVkLW~g~tGk~lasf 405 (480)
T KOG0271|consen 331 VLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNHVSFSPDG----RYIASASFDKSVKLWDGRTGKFLASF 405 (480)
T ss_pred hhccCcceeEEecCCceEEEecccccccchhhhhch-hhheeeEEECCCc----cEEEEeecccceeeeeCCCcchhhhh
Confidence 499999999999999865 4477788888 8899999999999 9999998 9999999999999999
Q ss_pred cCCcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCE
Q 001202 390 EGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMF 466 (1124)
Q Consensus 390 ~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~ 466 (1124)
.||-..|+++.. .+.+++++.|.|+++|++....- ...+-||...|.++.|||||+.
T Consensus 406 RGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl--------------------~~DLpGh~DEVf~vDwspDG~r 465 (480)
T KOG0271|consen 406 RGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL--------------------KQDLPGHADEVFAVDWSPDGQR 465 (480)
T ss_pred hhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee--------------------cccCCCCCceEEEEEecCCCce
Confidence 999999988777 67899999999999999877543 4556789999999999999999
Q ss_pred EEEEcCCCeE-EEE
Q 001202 467 LAVAGLHGLI-LYD 479 (1124)
Q Consensus 467 lAvag~dG~v-lwd 479 (1124)
+|+||.|..+ +|.
T Consensus 466 V~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 466 VASGGKDKVLRLWR 479 (480)
T ss_pred eecCCCceEEEeec
Confidence 9999999999 884
No 5
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=313.88 Aligned_cols=406 Identities=18% Similarity=0.229 Sum_probs=288.4
Q ss_pred ceEEEEeeCCeEEEEEcCCcEEEEecCCCcee--EEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeec
Q 001202 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVR--LGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1124)
Q Consensus 22 ~~iv~fS~dg~llA~~~~~~l~IW~~~~~~~~--l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~ 99 (1124)
...+.|||||++||++..+-+.||... .... ...+.+...-+.++..++++.||-|++.|++++.|-..++|.+...
T Consensus 99 v~~i~fSPng~~fav~~gn~lqiw~~P-~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~ 177 (893)
T KOG0291|consen 99 VGAIKFSPNGKFFAVGCGNLLQIWHAP-GEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGN 177 (893)
T ss_pred cceEEECCCCcEEEEEecceeEEEecC-cchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccc
Confidence 455899999999999999999999984 2122 3444444444556788899999999999999999999999999764
Q ss_pred CceeecCCCCCCCcceeeEEEEeeeeeecccccc-eEEEEe-ecCCeEEEEecCCcEEEEeccCcccccee---------
Q 001202 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGL-SVSNIV-SDNKHMLLGLSDGSLYSISWKGEFYGAFE--------- 168 (1124)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~-~d~~~llv~t~dg~v~~~~Wd~~~~~~~~--------- 168 (1124)
+.-. ...+.++.. -|.|+. .+...+++-+.||.+..|..+........
T Consensus 178 k~~~---------------------~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~ 236 (893)
T KOG0291|consen 178 KNLF---------------------TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSD 236 (893)
T ss_pred cccc---------------------eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccc
Confidence 4310 011222222 244433 35567888889998887765511000000
Q ss_pred -------------------e--ccCCCCccccccccccCCCC-cccccCCCCeeecccCCCCceEEEEEecCCcceEEEE
Q 001202 169 -------------------L--VHSSNDSSVAALSHHFPSNG-LASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (1124)
Q Consensus 169 -------------------l--~~~~~~~~~i~~i~fs~~~q-l~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~ 226 (1124)
+ .--...+.++....|.+... ++.+-..+... ..-.+.-.-|.++..+......+++
T Consensus 237 d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~-LyelP~f~lih~LSis~~~I~t~~~ 315 (893)
T KOG0291|consen 237 DEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG-LYELPDFNLIHSLSISDQKILTVSF 315 (893)
T ss_pred cccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE-EEecCCceEEEEeecccceeeEEEe
Confidence 0 00000111222222322222 11111111000 0111222233344444344455666
Q ss_pred ecCCcEEEEEecC-CceEeeeccccce---ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCC
Q 001202 227 YSNGQLMSCSVSK-KGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (1124)
Q Consensus 227 s~dG~~~~~~~~d-~~i~~wd~~~~~~---~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g 301 (1124)
+..|..++.++.. +.+-+|+.....- .+||.+.+ |+++||||++||+|+.||.|||||... +-|..++. .
T Consensus 316 N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S-gfC~vTFt----e 390 (893)
T KOG0291|consen 316 NSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS-GFCFVTFT----E 390 (893)
T ss_pred cccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC-ceEEEEec----c
Confidence 6777777777654 4556676554322 27999999 999999999999999999999999988 88999988 4
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee----eEEE
Q 001202 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQ 377 (1124)
Q Consensus 302 ~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~----~i~~ 377 (1124)
|+..|+.+.|+.+|+.+.+++-||+|+.||+...+...|+.....-..++++..|.| +.+..|. .+.+
T Consensus 391 ----Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG----elV~AG~~d~F~Ifv 462 (893)
T KOG0291|consen 391 ----HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG----ELVCAGAQDSFEIFV 462 (893)
T ss_pred ----CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC----CEEEeeccceEEEEE
Confidence 999999999999999999999999999999999999999988655667888888888 7777666 8899
Q ss_pred EeCCCCeEEEEecCCcceEEE--Eec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCc
Q 001202 378 WDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (1124)
Q Consensus 378 W~~~~~~l~~~~~~~~~~v~~--~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~ 454 (1124)
|+.++|+++-+..||.+.|.. |++ +..++|+|+|.|+++|++...... .....+...
T Consensus 463 WS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~--------------------vEtl~i~sd 522 (893)
T KOG0291|consen 463 WSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT--------------------VETLEIRSD 522 (893)
T ss_pred EEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce--------------------eeeEeeccc
Confidence 999999999999999999964 666 889999999999999998765441 122234456
Q ss_pred eEEEEEccCCCEEEEEcCCCeE-EEEcCCC
Q 001202 455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 455 I~~va~SpdG~~lAvag~dG~v-lwd~~sg 483 (1124)
+..++|+|||+-+|+++-||.+ +||+..+
T Consensus 523 vl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 523 VLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred eeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 8899999999999999999999 9998754
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-32 Score=289.90 Aligned_cols=313 Identities=15% Similarity=0.226 Sum_probs=236.2
Q ss_pred ccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCC
Q 001202 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRG 278 (1124)
Q Consensus 203 ~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~Dg 278 (1124)
.+.+|..+|.++.|+ |+|+.+++|+.|.|+++||..+.... .||...| |++|+|||+.||+|+.||
T Consensus 110 S~~GH~e~Vl~~~fs----------p~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFS----------PTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred ccCCCCCcEEEEEec----------CCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCC
Confidence 355788888665555 89999999999999999998765432 7999999 999999999999999999
Q ss_pred eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECC-----CCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCce
Q 001202 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-----DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 353 (1124)
Q Consensus 279 tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP-----DG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V 353 (1124)
+|++||-.++....+.+. | |+..|++++|-| .+++||+++.||+++|||+..+.++.++.|| +.+|
T Consensus 180 ~I~lwdpktg~~~g~~l~----g----H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH-T~~V 250 (480)
T KOG0271|consen 180 SIRLWDPKTGQQIGRALR----G----HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH-TASV 250 (480)
T ss_pred eEEEecCCCCCccccccc----C----cccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC-ccce
Confidence 999999888455556666 6 999999999975 6789999999999999999999999999999 8999
Q ss_pred eeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec--------------cc-------------
Q 001202 354 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--------------GK------------- 403 (1124)
Q Consensus 354 ~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~--------------~k------------- 403 (1124)
+++.|.-+ ..+.||+ ++++|....+.+.....||...|-.++. ++
T Consensus 251 TCvrwGG~-----gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al 325 (480)
T KOG0271|consen 251 TCVRWGGE-----GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL 325 (480)
T ss_pred EEEEEcCC-----ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence 99999765 4788888 9999999999999999998887743333 11
Q ss_pred ------------eEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEc
Q 001202 404 ------------CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG 471 (1124)
Q Consensus 404 ------------~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag 471 (1124)
.+++||.|.++.+|+-..... ......+|+.-|+++.|||||+|+|+|+
T Consensus 326 ~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk-------------------pi~rmtgHq~lVn~V~fSPd~r~IASaS 386 (480)
T KOG0271|consen 326 ERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK-------------------PITRMTGHQALVNHVSFSPDGRYIASAS 386 (480)
T ss_pred HHHHHhhccCcceeEEecCCceEEEeccccccc-------------------chhhhhchhhheeeEEECCCccEEEEee
Confidence 245555555555554332222 2245679999999999999999999999
Q ss_pred CCCeE-EEEcCCCcEE-EecCcCceeeeEEEEEEecCC--EEEEEEEecCCCeEEEEEeeCC--CCCCcceEEEeecCCc
Q 001202 472 LHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAK 545 (1124)
Q Consensus 472 ~dG~v-lwd~~sg~wk-~f~~~~~e~~~~v~gl~W~~~--~liv~~~~~~~~~~elrly~~~--~ld~~~~l~~~~l~s~ 545 (1124)
-|..| +||-.+|+.- .|.. | --.|..++|..| .++.| +.+..|.+|+.. ++-.+-..|..++ -
T Consensus 387 FDkSVkLW~g~tGk~lasfRG--H--v~~VYqvawsaDsRLlVS~-----SkDsTLKvw~V~tkKl~~DLpGh~DEV--f 455 (480)
T KOG0271|consen 387 FDKSVKLWDGRTGKFLASFRG--H--VAAVYQVAWSADSRLLVSG-----SKDSTLKVWDVRTKKLKQDLPGHADEV--F 455 (480)
T ss_pred cccceeeeeCCCcchhhhhhh--c--cceeEEEEeccCccEEEEc-----CCCceEEEEEeeeeeecccCCCCCceE--E
Confidence 99999 9999999843 2221 1 123778999887 44544 344588999773 2322111111110 1
Q ss_pred cEEEEeeCCEEEEEEcCCeEEEEE
Q 001202 546 PIVMDVYEDYILVTYRPFDVHIFH 569 (1124)
Q Consensus 546 ~l~l~~~~~~llv~~~d~~i~l~~ 569 (1124)
.+-.++.|..++-...|..+++|+
T Consensus 456 ~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 456 AVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEecCCCceeecCCCceEEEeec
Confidence 233456666666666777777774
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.1e-32 Score=290.73 Aligned_cols=276 Identities=14% Similarity=0.144 Sum_probs=226.0
Q ss_pred hhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEe--ec--
Q 001202 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SD-- 141 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~d-- 141 (1124)
..+++..+.||+||+.||+++-+|.+++|++........+. ++...|.++. |.
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~-----------------------gH~~~v~~~~fhP~~~ 230 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLR-----------------------GHTSRVGAAVFHPVDS 230 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEe-----------------------ccccceeeEEEccCCC
Confidence 34678899999999999999999999999987653322233 3333333322 22
Q ss_pred CCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcc
Q 001202 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (1124)
Q Consensus 142 ~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~ 221 (1124)
+..|+.|+.||++.+|..+.+..-. .+.+|...|..+.|+
T Consensus 231 ~~~lat~s~Dgtvklw~~~~e~~l~------------------------------------~l~gH~~RVs~VafH---- 270 (459)
T KOG0272|consen 231 DLNLATASADGTVKLWKLSQETPLQ------------------------------------DLEGHLARVSRVAFH---- 270 (459)
T ss_pred ccceeeeccCCceeeeccCCCcchh------------------------------------hhhcchhhheeeeec----
Confidence 4578899999999997666542211 234666777665555
Q ss_pred eEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEee
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~ 297 (1124)
|+|+++.+++-|.+-++||..+.... .||...| +++|+|||+++++|+.|..-+|||+.+ +.++..+.
T Consensus 271 ------PsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~- 342 (459)
T KOG0272|consen 271 ------PSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-GRCIMFLA- 342 (459)
T ss_pred ------CCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc-CcEEEEec-
Confidence 99999999999999999999987654 7999999 999999999999999999999999999 88888888
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEE
Q 001202 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQ 377 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~ 377 (1124)
| |..+|.+|+|||+|+.||||+.|++++|||+....++.++.+| .+-|+.+.|+|..
T Consensus 343 ---g----H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH-~nlVS~Vk~~p~~--------------- 399 (459)
T KOG0272|consen 343 ---G----HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH-SNLVSQVKYSPQE--------------- 399 (459)
T ss_pred ---c----cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc-cchhhheEecccC---------------
Confidence 6 9999999999999999999999999999999999999999998 7778888887732
Q ss_pred EeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEE
Q 001202 378 WDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (1124)
Q Consensus 378 W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~ 457 (1124)
|..++|++.|+++++|.-..... ..++.||.+.|.+
T Consensus 400 ------------------------g~fL~TasyD~t~kiWs~~~~~~--------------------~ksLaGHe~kV~s 435 (459)
T KOG0272|consen 400 ------------------------GYFLVTASYDNTVKIWSTRTWSP--------------------LKSLAGHEGKVIS 435 (459)
T ss_pred ------------------------CeEEEEcccCcceeeecCCCccc--------------------chhhcCCccceEE
Confidence 23457788888999887443322 4567899999999
Q ss_pred EEEccCCCEEEEEcCCCeE-EEE
Q 001202 458 VAASKDGMFLAVAGLHGLI-LYD 479 (1124)
Q Consensus 458 va~SpdG~~lAvag~dG~v-lwd 479 (1124)
+.+|+||++++++|.|.++ +|.
T Consensus 436 ~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 436 LDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999 985
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=9e-28 Score=274.79 Aligned_cols=468 Identities=17% Similarity=0.185 Sum_probs=298.9
Q ss_pred eEEEEeeCCeEEEEEcCCc-EEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCc
Q 001202 23 QIIYFKVNNGLLLIASPCH-IELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~~~~-l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~ 101 (1124)
.-+++||+|.+|.++.+.. ..+-+. ..+..+..+. -.+++-+++|||||+.+|++.. +.+.||......+
T Consensus 59 ~~ialSp~g~lllavdE~g~~~lvs~-~~r~Vlh~f~-------fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~ 129 (893)
T KOG0291|consen 59 TRIALSPDGTLLLAVDERGRALLVSL-LSRSVLHRFN-------FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIK 129 (893)
T ss_pred EEEEeCCCceEEEEEcCCCcEEEEec-ccceeeEEEe-------ecCccceEEECCCCcEEEEEec-ceeEEEecCcchh
Confidence 3478899999988887654 333333 2333332221 1355679999999999999865 5799999864332
Q ss_pred eeecCCCCCCCcceeeEEEEeeeeeecccccceEEEE--eecCCeEEEEecCCcEEEEeccCcccc-ceeeccCCCCccc
Q 001202 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYG-AFELVHSSNDSSV 178 (1124)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~d~~~llv~t~dg~v~~~~Wd~~~~~-~~~l~~~~~~~~~ 178 (1124)
..+. ...+. ....++...++++ +.|...+++|+.|-..+++.-++..+- .+.+. .|...
T Consensus 130 ~~~~-----------pFvl~----r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~---gHkd~ 191 (893)
T KOG0291|consen 130 NEFN-----------PFVLH----RTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALN---GHKDY 191 (893)
T ss_pred cccC-----------cceEe----eeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEecc---CCCcc
Confidence 1111 11111 1122333344443 445667778888888888766654431 11111 12222
Q ss_pred cccccccCCCC-cccccCCCCee-------------------------------------------ecccCCCCceEEEE
Q 001202 179 AALSHHFPSNG-LASVDTSGAFV-------------------------------------------SDHKFPISSAIIWL 214 (1124)
Q Consensus 179 i~~i~fs~~~q-l~s~~~~~~~~-------------------------------------------~~~~~~~~~~I~~i 214 (1124)
+-..-|..++. +.+.+.++.+. +..+....+.|++.
T Consensus 192 VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa 271 (893)
T KOG0291|consen 192 VVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAA 271 (893)
T ss_pred eEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeee
Confidence 22222333321 22222221111 11222233445555
Q ss_pred EecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecC-CeEEEEEcCCCC
Q 001202 215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRR-GVVELYDLAESA 289 (1124)
Q Consensus 215 ~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~D-gtV~vwd~~~~~ 289 (1124)
.|++.. ++++++...+...+++....... .-....+ .++||..|.+||.||.- |.+-||+... .
T Consensus 272 ~fH~~t----------~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs-E 340 (893)
T KOG0291|consen 272 AFHKGT----------NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS-E 340 (893)
T ss_pred eccCCc----------eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec-c
Confidence 555444 44444444444444444332221 1112456 89999999999999875 8999999987 4
Q ss_pred ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceE
Q 001202 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (1124)
Q Consensus 290 ~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l 369 (1124)
..+.+.. | |...++|+++||||+++|+|++||.|||||...+-|+.|+..| ++.|+.+.|+..+ +.+
T Consensus 341 sYVlKQQ----g----H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH-ts~Vt~v~f~~~g----~~l 407 (893)
T KOG0291|consen 341 SYVLKQQ----G----HSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH-TSGVTAVQFTARG----NVL 407 (893)
T ss_pred ceeeecc----c----cccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC-CCceEEEEEEecC----CEE
Confidence 4443333 5 9999999999999999999999999999999999999999999 8999999999998 888
Q ss_pred EEee---eEEEEeCCCCeEEEEecCCc-ceE--EEEec-cceEEeeccCC-ceeeeEeeecCCeEEEeecCCCccceeee
Q 001202 370 MSGT---SMMQWDEYGYRLYAIEEGSS-ERV--LIFSF-GKCCLNRGVSG-MTYARQVIYGEDRLLVVQSEDTDELKILH 441 (1124)
Q Consensus 370 ~sg~---~i~~W~~~~~~l~~~~~~~~-~~v--~~~s~-~k~~~s~s~d~-~v~~w~l~~~~~~l~l~~~~~~~~~~w~~ 441 (1124)
.|.+ +++.||...|+.+.+..... .+. ++.++ |..+..|+.|. .+.+|++.+|..
T Consensus 408 lssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql----------------- 470 (893)
T KOG0291|consen 408 LSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL----------------- 470 (893)
T ss_pred EEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee-----------------
Confidence 8776 99999999999998876522 122 55666 66666777665 478888877664
Q ss_pred cccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCC--cEEEecCcCceeeeEEEEEEec--CCEEEEEEEec
Q 001202 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK--KWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYID 516 (1124)
Q Consensus 442 ~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg--~wk~f~~~~~e~~~~v~gl~W~--~~~liv~~~~~ 516 (1124)
...+.||.+||.+++|+|+|..||+|+-|.+| +||+-+. ....+ +..-.+.++... |+-+.++..
T Consensus 471 ---lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-----~i~sdvl~vsfrPdG~elaVaTl-- 540 (893)
T KOG0291|consen 471 ---LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-----EIRSDVLAVSFRPDGKELAVATL-- 540 (893)
T ss_pred ---eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-----eeccceeEEEEcCCCCeEEEEEe--
Confidence 55677999999999999999999999999999 9998543 11111 110114455665 566666644
Q ss_pred CCCeEEEEEeeCC-C---------CC-------CcceEEEe---ecCCccEEEEeeCCEEEEEEcCCeEEEEEEE
Q 001202 517 SSNTYELLFYPRY-H---------LD-------QSSLLCRK---SLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (1124)
Q Consensus 517 ~~~~~elrly~~~-~---------ld-------~~~~l~~~---~l~s~~l~l~~~~~~llv~~~d~~i~l~~~~ 571 (1124)
+.+|-+|+.+ . .| ++.+.... .-+-..+.++..|..++.+.....|++|++.
T Consensus 541 ---dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 541 ---DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVP 612 (893)
T ss_pred ---cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence 2367777762 1 11 11111110 0112346778888899998888999999885
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=4.4e-27 Score=260.17 Aligned_cols=444 Identities=12% Similarity=0.156 Sum_probs=278.9
Q ss_pred CceEEEEeeCCeEEEEEcC-CcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCC----CeEEEEE
Q 001202 21 SQQIIYFKVNNGLLLIASP-CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS----LYLHIFK 95 (1124)
Q Consensus 21 ~~~iv~fS~dg~llA~~~~-~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d----g~l~i~~ 95 (1124)
..-+..|||.|.++|++.. ++|+||+..+. ..+.+..-.. --|++..+.|++||++|++.+.. |.+.+||
T Consensus 61 ~vtVAkySPsG~yiASGD~sG~vRIWdtt~~-~hiLKnef~v----~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D 135 (603)
T KOG0318|consen 61 QVTVAKYSPSGFYIASGDVSGKVRIWDTTQK-EHILKNEFQV----LAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD 135 (603)
T ss_pred eeEEEEeCCCceEEeecCCcCcEEEEeccCc-ceeeeeeeee----cccccccceeCCCCcEEEEEecCccceeEEEEec
Confidence 3456889999999999875 58999999632 3332222111 14999999999999999887644 3445555
Q ss_pred eeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEe--ec-CCeEEEEecCCcEEEEeccCccccceeeccC
Q 001202 96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHS 172 (1124)
Q Consensus 96 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~d-~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~ 172 (1124)
-..+. + .+.++...+.++. +. +-+++.|++|+.+..+ ++. .+.+.
T Consensus 136 SG~Sv-----G--------------------ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ff--eGP---PFKFk-- 183 (603)
T KOG0318|consen 136 SGNSV-----G--------------------EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFF--EGP---PFKFK-- 183 (603)
T ss_pred CCCcc-----c--------------------eeeccceeEeeeeccCCCceEEEeccCCCeEEEe--eCC---Ceeee--
Confidence 43211 0 0112222233322 21 3578888999998875 332 22111
Q ss_pred CCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce
Q 001202 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK 252 (1124)
Q Consensus 173 ~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~ 252 (1124)
.....|...|.++.|+ |||..+++.+.|+.+-++|+.++++
T Consensus 184 -----------------------------~s~r~HskFV~~VRys----------PDG~~Fat~gsDgki~iyDGktge~ 224 (603)
T KOG0318|consen 184 -----------------------------SSFREHSKFVNCVRYS----------PDGSRFATAGSDGKIYIYDGKTGEK 224 (603)
T ss_pred -----------------------------ecccccccceeeEEEC----------CCCCeEEEecCCccEEEEcCCCccE
Confidence 1244677788888888 5666666666666666677777665
Q ss_pred e------cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccC---------------------C---
Q 001202 253 E------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW---------------------G--- 301 (1124)
Q Consensus 253 ~------~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~---------------------g--- 301 (1124)
. .+|.+.+ .++|+||++.+++.+.|.++||||+.+ .++++++..... |
T Consensus 225 vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~-~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in 303 (603)
T KOG0318|consen 225 VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST-NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTIN 303 (603)
T ss_pred EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec-cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEE
Confidence 4 4799999 999999999999999999999999987 444443321110 1
Q ss_pred -----------CCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEe-ccCCcCceeeeEEcCCCCCCcceE
Q 001202 302 -----------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI-RQISLSSISSPIVKPNQDCKYEPL 369 (1124)
Q Consensus 302 -----------~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl-~~h~~~~V~s~~~sp~~~~~~~~l 369 (1124)
...+|...|++++.+|||++|.+|+.||.|.-|+..++..-.-. ++| .+.|..++.+..+ +.+
T Consensus 304 ~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h-~nqI~~~~~~~~~----~~~ 378 (603)
T KOG0318|consen 304 YLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGH-TNQIKGMAASESG----ELF 378 (603)
T ss_pred EecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccc-cceEEEEeecCCC----cEE
Confidence 01279999999999999999999999999999999887643333 234 6677777665543 333
Q ss_pred EEee--eEEEEeCCCC------------------------eEEEEe-------cCC----------cceEEEEec-cceE
Q 001202 370 MSGT--SMMQWDEYGY------------------------RLYAIE-------EGS----------SERVLIFSF-GKCC 405 (1124)
Q Consensus 370 ~sg~--~i~~W~~~~~------------------------~l~~~~-------~~~----------~~~v~~~s~-~k~~ 405 (1124)
..|- +++.-+..+. -.+++. +++ .....++++ ++.+
T Consensus 379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v 458 (603)
T KOG0318|consen 379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV 458 (603)
T ss_pred EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence 3222 3333222110 111110 000 111234444 4455
Q ss_pred EeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccc-eeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCC
Q 001202 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 406 ~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p-~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg 483 (1124)
+-|+.|+.++++.+..++. .. .....|.++|+++++||||.|||+|...+.+ +||+.++
T Consensus 459 aVGG~Dgkvhvysl~g~~l-------------------~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 459 AVGGQDGKVHVYSLSGDEL-------------------KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASR 519 (603)
T ss_pred EEecccceEEEEEecCCcc-------------------cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccC
Confidence 5666677766666544332 12 2456799999999999999999999999999 9999887
Q ss_pred cEEEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEeecCCccEEEE-eeCCEEEEEEcC
Q 001202 484 KWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD-VYEDYILVTYRP 562 (1124)
Q Consensus 484 ~wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~~~ld~~~~l~~~~l~s~~l~l~-~~~~~llv~~~d 562 (1124)
.-++-.-.. +.-.+.+++|.++...++.. +-+..+.+|+.++.... +..+-.++..+-.+. ..+..++....|
T Consensus 520 ~~~~~~w~F--HtakI~~~aWsP~n~~vATG---SlDt~Viiysv~kP~~~-i~iknAH~~gVn~v~wlde~tvvSsG~D 593 (603)
T KOG0318|consen 520 EVKTNRWAF--HTAKINCVAWSPNNKLVATG---SLDTNVIIYSVKKPAKH-IIIKNAHLGGVNSVAWLDESTVVSSGQD 593 (603)
T ss_pred ceecceeee--eeeeEEEEEeCCCceEEEec---cccceEEEEEccChhhh-eEeccccccCceeEEEecCceEEeccCc
Confidence 543211000 11236789999887666643 34457899988633222 322222222222222 233456667789
Q ss_pred CeEEEEEEE
Q 001202 563 FDVHIFHVK 571 (1124)
Q Consensus 563 ~~i~l~~~~ 571 (1124)
..|++|++.
T Consensus 594 a~iK~W~v~ 602 (603)
T KOG0318|consen 594 ANIKVWNVT 602 (603)
T ss_pred ceeEEeccc
Confidence 999999874
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.1e-27 Score=274.55 Aligned_cols=425 Identities=16% Similarity=0.179 Sum_probs=292.0
Q ss_pred EEEEeeCCeEEEEEcCC-cEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCce
Q 001202 24 IIYFKVNNGLLLIASPC-HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (1124)
Q Consensus 24 iv~fS~dg~llA~~~~~-~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~ 102 (1124)
...++||++.|.++..+ -+++|+.. .+ .+.|+-+. .+.+++..++|.|-|..+|+++.||.+++||+..+...
T Consensus 67 a~~l~~d~~~L~~a~rs~llrv~~L~-tg----k~irswKa-~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 67 ALALTPDEEVLVTASRSQLLRVWSLP-TG----KLIRSWKA-IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred eeeecCCccEEEEeeccceEEEEEcc-cc----hHhHhHhh-ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 36789999988888765 59999995 43 34444332 35799999999999999999999999999999876655
Q ss_pred eecCCCCCC-----------------C-cceeeEEEEeeeee----ecccccceEEE--EeecCCeEEEEecCCcEEEEe
Q 001202 103 IQIGGKQPS-----------------G-LFFIKISLVLNEQL----PFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSIS 158 (1124)
Q Consensus 103 ~~~~~~~~~-----------------~-~~~~~~~~~~~~~~----~~~~~~~~v~~--i~~d~~~llv~t~dg~v~~~~ 158 (1124)
.++.++.+. | ....-..|...-+. ....+...|++ +.+|+..++.++.|..+.+|+
T Consensus 141 h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd 220 (775)
T KOG0319|consen 141 HSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWD 220 (775)
T ss_pred EEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEee
Confidence 445444321 0 00111123322111 11223333444 557888899999999888754
Q ss_pred ccCccccce-ee------cc----CC------------CCcccc-------------cccc----------ccCCCCccc
Q 001202 159 WKGEFYGAF-EL------VH----SS------------NDSSVA-------------ALSH----------HFPSNGLAS 192 (1124)
Q Consensus 159 Wd~~~~~~~-~l------~~----~~------------~~~~~i-------------~~i~----------fs~~~ql~s 192 (1124)
. ...... .+ +. .. ..++.+ ...| ....+++..
T Consensus 221 ~--~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~ 298 (775)
T KOG0319|consen 221 L--VQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLL 298 (775)
T ss_pred h--hhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEE
Confidence 4 221110 00 00 00 000000 0000 000111100
Q ss_pred ccCCCCee---------ecccCCCCceEEEEE--------------------------------ecCCcceEEEEecCCc
Q 001202 193 VDTSGAFV---------SDHKFPISSAIIWLE--------------------------------LCLPMRLLFVLYSNGQ 231 (1124)
Q Consensus 193 ~~~~~~~~---------~~~~~~~~~~I~~i~--------------------------------~s~~~~~~~~~s~dG~ 231 (1124)
...+.++- ...+.+....|.+|- -+.+....+.+..+|-
T Consensus 299 vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~ 378 (775)
T KOG0319|consen 299 VTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGD 378 (775)
T ss_pred EEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCc
Confidence 11110000 000111111222221 1222334555668898
Q ss_pred EEEEEecCCceEeeeccccce-------ecCCCCeE-EEEEccC-CCEEEEEecCCeEEEEEcCCCCceeE-EEeeccCC
Q 001202 232 LMSCSVSKKGLKLAEFIKIDK-------ELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIR-TVSLYDWG 301 (1124)
Q Consensus 232 ~~~~~~~d~~i~~wd~~~~~~-------~~gh~~~v-~va~spd-g~lLAsGs~DgtV~vwd~~~~~~~~~-~l~~~~~g 301 (1124)
++++++.|.++++|...+... ..||+..| +|+++.. ...+|++|.|+++++|++.. .+... ...+...-
T Consensus 379 llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~-s~~~~~~~~~~~~~ 457 (775)
T KOG0319|consen 379 LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK-SKETAFPIVLTCRY 457 (775)
T ss_pred EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCC-cccccccceehhhH
Confidence 999999999999997633221 16899999 9999875 46899999999999999976 21111 11110000
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEE
Q 001202 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQW 378 (1124)
Q Consensus 302 ~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W 378 (1124)
.-..|...|+||+.+|+.+.+||||.|++.+||++..+.+..+|.|| ...|.++.|+|.+ +.+++++ ++++|
T Consensus 458 t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH-~RGvw~V~Fs~~d----q~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 458 TERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH-TRGVWCVSFSKND----QLLATCSGDKTVKIW 532 (775)
T ss_pred HHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC-ccceEEEEecccc----ceeEeccCCceEEEE
Confidence 11358999999999999999999999999999999999999999999 8899999999998 8888876 99999
Q ss_pred eCCCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCce
Q 001202 379 DEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (1124)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I 455 (1124)
.+.++.++.+..||...|+..+| ++.++|++.||-+++|++.+++. ..++-+|+..|
T Consensus 533 ~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC--------------------~~tlD~H~Drv 592 (775)
T KOG0319|consen 533 SISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC--------------------EMTLDAHNDRV 592 (775)
T ss_pred EeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh--------------------hhhhhhcccee
Confidence 99999999999999999988888 89999999999999999988776 67788999999
Q ss_pred EEEEEccCCCEEEEEcCCCeE-EEEcCC
Q 001202 456 QHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 456 ~~va~SpdG~~lAvag~dG~v-lwd~~s 482 (1124)
+.++.+|++.++++||.||.+ +|.=.|
T Consensus 593 WaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 593 WALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred EEEeecCccceeEecCCCeEEEEeecCc
Confidence 999999999999999999999 886443
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.8e-29 Score=270.47 Aligned_cols=265 Identities=15% Similarity=0.187 Sum_probs=223.0
Q ss_pred eEEEEecCCcEEEEEecCCceEeeeccccce---ecCCCCeE-EEEEccC--CCEEEEEecCCeEEEEEcCCCCceeEEE
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPE--QQILAVGTRRGVVELYDLAESASLIRTV 295 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~---~~gh~~~v-~va~spd--g~lLAsGs~DgtV~vwd~~~~~~~~~~l 295 (1124)
..+.++.||+.+++++-++..++|+..+... +.||+..+ ++.|+|. +..+|+|+.||+|++|+++. ..++..+
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~-e~~l~~l 257 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ-ETPLQDL 257 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC-Ccchhhh
Confidence 3566779999999999999999998876643 37999999 9999997 56899999999999999987 6777777
Q ss_pred eeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee--
Q 001202 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (1124)
Q Consensus 296 ~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~-- 373 (1124)
. | |...|..++|+|+|++|+|++.|.++++||+.++..+.-.+|| ...|.+++|+|+| ..++||+
T Consensus 258 ~----g----H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH-s~~v~~iaf~~DG----SL~~tGGlD 324 (459)
T KOG0272|consen 258 E----G----HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH-SKGVFSIAFQPDG----SLAATGGLD 324 (459)
T ss_pred h----c----chhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc-ccccceeEecCCC----ceeeccCcc
Confidence 7 6 9999999999999999999999999999999999988888898 7889999999999 8888887
Q ss_pred -eEEEEeCCCCeEEEEecCCcceEEE--Eec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeec
Q 001202 374 -SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (1124)
Q Consensus 374 -~i~~W~~~~~~l~~~~~~~~~~v~~--~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~ 449 (1124)
..++||..+++.++...+|...|+. |++ |-.++|||.|+++++||+..... ..+..
T Consensus 325 ~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~--------------------ly~ip 384 (459)
T KOG0272|consen 325 SLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE--------------------LYTIP 384 (459)
T ss_pred chhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc--------------------ceecc
Confidence 8899999999999999999999955 455 88899999999999999876554 33455
Q ss_pred cCCCceEEEEEcc-CCCEEEEEcCCCeE-EEEcCCCcEEEec-CcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEe
Q 001202 450 SQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQKKWRVFG-DITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFY 526 (1124)
Q Consensus 450 ~~~~~I~~va~Sp-dG~~lAvag~dG~v-lwd~~sg~wk~f~-~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly 526 (1124)
+|..-|..|.|+| .|++|++||.|+++ +|+..+ |...+ -..||..+....+.-.++.++++++ | ..+++|
T Consensus 385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~--~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~---D--RT~KLW 457 (459)
T KOG0272|consen 385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT--WSPLKSLAGHEGKVISLDISPDSQAIATSSF---D--RTIKLW 457 (459)
T ss_pred cccchhhheEecccCCeEEEEcccCcceeeecCCC--cccchhhcCCccceEEEEeccCCceEEEecc---C--ceeeec
Confidence 7999999999998 89999999999999 998765 44333 2345554444455556677888755 2 367776
Q ss_pred e
Q 001202 527 P 527 (1124)
Q Consensus 527 ~ 527 (1124)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 3
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=5.2e-27 Score=259.55 Aligned_cols=374 Identities=16% Similarity=0.233 Sum_probs=255.3
Q ss_pred eEEEEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCc
Q 001202 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~ 101 (1124)
+.|.|||||++||+++ |+++.|+|. +.+.+++.+.- +..+.|.+.++.||||++.+++++.|.+++|||+.+...
T Consensus 194 ~~VRysPDG~~Fat~gsDgki~iyDG-ktge~vg~l~~---~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 194 NCVRYSPDGSRFATAGSDGKIYIYDG-KTGEKVGELED---SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred eeEEECCCCCeEEEecCCccEEEEcC-CCccEEEEecC---CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence 4489999999999966 678999999 68998887753 345789999999999999999999999999999987652
Q ss_pred eee--cCCC---CCCCcce----eeEEEEeeeee------------ecccccceEEEEe--ecCCeEEEEecCCcEEEEe
Q 001202 102 SIQ--IGGK---QPSGLFF----IKISLVLNEQL------------PFAEKGLSVSNIV--SDNKHMLLGLSDGSLYSIS 158 (1124)
Q Consensus 102 ~~~--~~~~---~~~~~~~----~~~~~~~~~~~------------~~~~~~~~v~~i~--~d~~~llv~t~dg~v~~~~ 158 (1124)
-.. .+.. ++.| ++ .-+..+.++.+ .+.++...|++++ ++++.++.|+.||.|..
T Consensus 270 v~t~~~~~~v~dqqvG-~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~-- 346 (603)
T KOG0318|consen 270 VSTWPMGSTVEDQQVG-CLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINS-- 346 (603)
T ss_pred EEEeecCCchhceEEE-EEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEE--
Confidence 111 1111 1111 00 01122222222 3356666777755 57789999999998865
Q ss_pred ccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCC---CceEEEEEecCCcceEEEEecCCcEEEE
Q 001202 159 WKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI---SSAIIWLELCLPMRLLFVLYSNGQLMSC 235 (1124)
Q Consensus 159 Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~---~~~I~~i~~s~~~~~~~~~s~dG~~~~~ 235 (1124)
|+........+.+ ..+...|..+.-+..+++.+.+-++.++.+..... +..+..+..- ...+++.+||.+++.
T Consensus 347 W~~~~g~~~~~~g-~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q---P~~lav~~d~~~avv 422 (603)
T KOG0318|consen 347 WDSGSGTSDRLAG-KGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ---PKGLAVLSDGGTAVV 422 (603)
T ss_pred EecCCcccccccc-ccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCC---ceeEEEcCCCCEEEE
Confidence 7765543332221 22444555555555555666666666665544222 1222222222 236777788766665
Q ss_pred EecCCceEeeeccccceecCCC-CeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEE
Q 001202 236 SVSKKGLKLAEFIKIDKELGSG-DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA 314 (1124)
Q Consensus 236 ~~~d~~i~~wd~~~~~~~~gh~-~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~la 314 (1124)
...+.- .+....+.-...... .+.|+|++|+++.+|+|++||.|+||.+.. +.+.....+. .|.++|++++
T Consensus 423 ~~~~~i-v~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g-~~l~ee~~~~------~h~a~iT~va 494 (603)
T KOG0318|consen 423 ACISDI-VLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG-DELKEEAKLL------EHRAAITDVA 494 (603)
T ss_pred EecCcE-EEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC-Ccccceeeee------cccCCceEEE
Confidence 554433 232211110001111 233899999999999999999999999987 4333222211 2999999999
Q ss_pred ECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCe-EEEEec
Q 001202 315 WTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR-LYAIEE 390 (1124)
Q Consensus 315 wSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~-l~~~~~ 390 (1124)
+||||.+||+|...+.+.+||+.+.......-..|++.|.+++|+|+. ..+++|+ .+.+|+.+... -+....
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n----~~vATGSlDt~Viiysv~kP~~~i~ikn 570 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN----KLVATGSLDTNVIIYSVKKPAKHIIIKN 570 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc----eEEEeccccceEEEEEccChhhheEecc
Confidence 999999999999999999999999876433334458899999999998 8999998 88899987543 244455
Q ss_pred CCcceEEEEec--cceEEeeccCCceeeeEe
Q 001202 391 GSSERVLIFSF--GKCCLNRGVSGMTYARQV 419 (1124)
Q Consensus 391 ~~~~~v~~~s~--~k~~~s~s~d~~v~~w~l 419 (1124)
.|...|..+.+ ...+++.+.|..++.|.+
T Consensus 571 AH~~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 571 AHLGGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred ccccCceeEEEecCceEEeccCcceeEEecc
Confidence 67777866666 667889999999999985
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=1.2e-25 Score=233.24 Aligned_cols=282 Identities=14% Similarity=0.166 Sum_probs=218.7
Q ss_pred hhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeE
Q 001202 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~l 145 (1124)
+.+.+.++-|++|++.|++++.||.+.|||.-+..|... +++.....-.++++|.+..+
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~ha---------------------ipl~s~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHA---------------------IPLPSSWVMTCAYSPSGNFV 112 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeE---------------------EecCceeEEEEEECCCCCeE
Confidence 457789999999999999999999999999877654221 12233334456788889988
Q ss_pred EEEecCCcEEEEeccCcc-ccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEE
Q 001202 146 LLGLSDGSLYSISWKGEF-YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1124)
Q Consensus 146 lv~t~dg~v~~~~Wd~~~-~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~ 224 (1124)
++|+-|....++...... .+.. .....+.+|.+++.+..|-
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~-------------------------------~v~r~l~gHtgylScC~f~------- 154 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNV-------------------------------RVSRELAGHTGYLSCCRFL------- 154 (343)
T ss_pred EecCcCceeEEEecccccccccc-------------------------------eeeeeecCccceeEEEEEc-------
Confidence 888888766665544211 1110 1112456788888765553
Q ss_pred EEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEcc-CCCEEEEEecCCeEEEEEcCCCCceeEEEeecc
Q 001202 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1124)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~sp-dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~ 299 (1124)
+|+ .+++++.|.+.-+||++++++. .||..-| +++++| +++.+++|+-|++.+|||+.. +.+.+++.
T Consensus 155 ---dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~--- 226 (343)
T KOG0286|consen 155 ---DDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFE--- 226 (343)
T ss_pred ---CCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-cceeEeec---
Confidence 444 4788899999999999999765 6999999 999999 999999999999999999998 88999998
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccC-CcCceeeeEEcCCCCCCcceEEEeeeEEEE
Q 001202 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGTSMMQW 378 (1124)
Q Consensus 300 ~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h-~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W 378 (1124)
| |..-|++|+|.|+|..+|+|++|++.++||+...+.+..+... -..+|++++||..
T Consensus 227 -g----hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S----------------- 284 (343)
T KOG0286|consen 227 -G----HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS----------------- 284 (343)
T ss_pred -c----cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc-----------------
Confidence 7 9999999999999999999999999999999987766665421 0122333333322
Q ss_pred eCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEE
Q 001202 379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (1124)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~v 458 (1124)
|+.+.+|..|.++.+||.+.++. ...+.+|.+.|.++
T Consensus 285 -----------------------GRlLfagy~d~~c~vWDtlk~e~--------------------vg~L~GHeNRvScl 321 (343)
T KOG0286|consen 285 -----------------------GRLLFAGYDDFTCNVWDTLKGER--------------------VGVLAGHENRVSCL 321 (343)
T ss_pred -----------------------ccEEEeeecCCceeEeeccccce--------------------EEEeeccCCeeEEE
Confidence 45556667788999999887765 45677999999999
Q ss_pred EEccCCCEEEEEcCCCeE-EEE
Q 001202 459 AASKDGMFLAVAGLHGLI-LYD 479 (1124)
Q Consensus 459 a~SpdG~~lAvag~dG~v-lwd 479 (1124)
..+|||.-+++|+-|.++ +|.
T Consensus 322 ~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 322 GVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EECCCCcEEEecchhHheeecC
Confidence 999999999999999988 884
No 14
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.1e-23 Score=241.80 Aligned_cols=264 Identities=13% Similarity=0.197 Sum_probs=219.3
Q ss_pred EeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEec
Q 001202 138 IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (1124)
Q Consensus 138 i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s 217 (1124)
+.|..--++++..+|.|+. ||=..+... -.+.+|+++|+.+.|+
T Consensus 17 FHP~rPwILtslHsG~IQl--WDYRM~tli----------------------------------~rFdeHdGpVRgv~FH 60 (1202)
T KOG0292|consen 17 FHPKRPWILTSLHSGVIQL--WDYRMGTLI----------------------------------DRFDEHDGPVRGVDFH 60 (1202)
T ss_pred cCCCCCEEEEeecCceeee--ehhhhhhHH----------------------------------hhhhccCCccceeeec
Confidence 3344556889999999998 553332211 0256889999888777
Q ss_pred CCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeE
Q 001202 218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIR 293 (1124)
Q Consensus 218 ~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~ 293 (1124)
|++.++++|++|..|++|+..+.++. .||-|.| .+.|++...+|.++|.|.||+||+..+ .+++.
T Consensus 61 ----------~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs-r~~ia 129 (1202)
T KOG0292|consen 61 ----------PTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS-RKCIA 129 (1202)
T ss_pred ----------CCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-CceEE
Confidence 67888899999999999998887765 7999999 999999999999999999999999998 89999
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC-----------------------------eeeEE
Q 001202 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-----------------------------RLMST 344 (1124)
Q Consensus 294 ~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~-----------------------------~l~~t 344 (1124)
.+. | |.-.|.|..|.|....++|||-|.+|||||+.|- -....
T Consensus 130 vlt----G----HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 130 VLT----G----HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred EEe----c----CceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 998 7 9999999999999999999999999999998541 11235
Q ss_pred eccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEE--ecCCcceE--EEEec-cceEEeeccCCceee
Q 001202 345 IRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI--EEGSSERV--LIFSF-GKCCLNRGVSGMTYA 416 (1124)
Q Consensus 345 l~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~--~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~ 416 (1124)
+.|| ...|+-++|+|.. ..++||+ .+++|.....+.|-+ ..||.+.| +.|.+ ...++|.|.|+++++
T Consensus 202 LEGH-DRGVNwaAfhpTl----pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirV 276 (1202)
T KOG0292|consen 202 LEGH-DRGVNWAAFHPTL----PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV 276 (1202)
T ss_pred eccc-ccccceEEecCCc----ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEE
Confidence 6677 7889999999987 8889988 889999888887765 46888888 55666 678899999999999
Q ss_pred eEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeEEEEcC
Q 001202 417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIR 481 (1124)
Q Consensus 417 w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~vlwd~~ 481 (1124)
||...... ..++...++..+.++..|.++.+|.|-..|.++|-+.
T Consensus 277 wDm~kRt~--------------------v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 277 WDMTKRTS--------------------VQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred Eecccccc--------------------eeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence 99755433 4667778889999999999999999988888888765
No 15
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.2e-24 Score=222.05 Aligned_cols=280 Identities=13% Similarity=0.154 Sum_probs=215.7
Q ss_pred ecCCCCeE-EEEEccC-CCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCc
Q 001202 253 ELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (1124)
Q Consensus 253 ~~gh~~~v-~va~spd-g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~ 330 (1124)
..+|.+.+ .++|+|- |..||+|+.|.+||+|+... +.........+-+ |+..|++++|||.|++||+|+.|.+
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~vld~~----hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS-GDSWTCKTVLDDG----HKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCC-CCcEEEEEecccc----chheeeeeeecCCCcEEEEeeccce
Confidence 37899999 9999998 99999999999999999885 3222222222224 9999999999999999999999999
Q ss_pred EEEEEcCCC--eeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCC---CCeEEEEecCCcceE--EEEe
Q 001202 331 LTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY---GYRLYAIEEGSSERV--LIFS 400 (1124)
Q Consensus 331 I~vWdv~~~--~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~---~~~l~~~~~~~~~~v--~~~s 400 (1124)
+.||.-..+ +++.+|+|| .+.|.+++|+++| .+|++++ ++-+|... .+++..++++|...| +.+.
T Consensus 85 ~~Iw~k~~~efecv~~lEGH-EnEVK~Vaws~sG----~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGH-ENEVKCVAWSASG----NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred EEEeecCCCceeEEeeeecc-ccceeEEEEcCCC----CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence 999998755 678899999 8999999999999 9999988 77788765 467888899998887 7777
Q ss_pred c-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EE
Q 001202 401 F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 478 (1124)
Q Consensus 401 ~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lw 478 (1124)
| ...++|+|+|+++++|.-..+++ |. +..++.+|+..|++++|+|+|..|++++.|+++ +|
T Consensus 160 Pt~dlL~S~SYDnTIk~~~~~~ddd--------------W~---c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw 222 (312)
T KOG0645|consen 160 PTEDLLFSCSYDNTIKVYRDEDDDD--------------WE---CVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIW 222 (312)
T ss_pred CCcceeEEeccCCeEEEEeecCCCC--------------ee---EEEEecCccceEEEEEecCCCceEEEecCCcceEee
Confidence 7 66789999999999998654443 32 356778899999999999999999999999999 99
Q ss_pred EcCCCcEEEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeCC-CCCCcce--E----EEeecCCccEEEEe
Q 001202 479 DIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSL--L----CRKSLLAKPIVMDV 551 (1124)
Q Consensus 479 d~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~~-~ld~~~~--l----~~~~l~s~~l~l~~ 551 (1124)
-..+ .....++..+..+.|.++.|..+ .++..||+|... ..+...+ + ..+...-..+.-++
T Consensus 223 ~~~~-------~~~~~~sr~~Y~v~W~~~~IaS~-----ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 223 RLYT-------DLSGMHSRALYDVPWDNGVIASG-----GGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNP 290 (312)
T ss_pred eecc-------CcchhcccceEeeeecccceEec-----cCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcC
Confidence 7553 23333444577789995555555 334589999774 3232211 1 11222334456666
Q ss_pred -eCCEEEEEEcCCeEEEEEEE
Q 001202 552 -YEDYILVTYRPFDVHIFHVK 571 (1124)
Q Consensus 552 -~~~~llv~~~d~~i~l~~~~ 571 (1124)
..+.|+...+||.+.+|.++
T Consensus 291 ~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 291 KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCceeecCCCceEEEEEec
Confidence 35566668899999999875
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=1.2e-25 Score=261.12 Aligned_cols=230 Identities=18% Similarity=0.283 Sum_probs=206.0
Q ss_pred CcceEEEEecCCcEEEEEecCCceEeeeccccc----------------------------------eecCCCCeE-EEE
Q 001202 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----------------------------------KELGSGDAV-CAS 263 (1124)
Q Consensus 219 ~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~----------------------------------~~~gh~~~v-~va 263 (1124)
..-.++.|++|++.+|+|..|..+++|.....+ .+.||+++| .++
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS 458 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence 344688889999999999999999999765210 014899999 999
Q ss_pred EccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeE
Q 001202 264 IAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS 343 (1124)
Q Consensus 264 ~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~ 343 (1124)
|+|+.++|.+++.|++||+|.+++ ..++-..+ | |..||+++.|+|-|.++|||+.|++-++|+........
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t-~s~~V~y~----G----H~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDT-WSCLVIYK----G----HLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR 529 (707)
T ss_pred ecccccceeeccCCcceeeeeccc-ceeEEEec----C----CCcceeeEEecCCceEEEecCCCceeeeeecccCCchh
Confidence 999999999999999999999998 66665555 6 99999999999999999999999999999999999999
Q ss_pred EeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceE--EEEec-cceEEeeccCCceeee
Q 001202 344 TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYAR 417 (1124)
Q Consensus 344 tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w 417 (1124)
.+.|| .+.|.++.|+|+. .++++|+ ++++|+..++..+....||.+.| +++++ |+.+++|+.|+.+++|
T Consensus 530 ifagh-lsDV~cv~FHPNs----~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iW 604 (707)
T KOG0263|consen 530 IFAGH-LSDVDCVSFHPNS----NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIW 604 (707)
T ss_pred hhccc-ccccceEEECCcc----cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEE
Confidence 99998 8999999999998 8999998 99999999999999999999999 55566 9999999999999999
Q ss_pred EeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC
Q 001202 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 418 ~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s 482 (1124)
|+..+.. ...+.+|.+.|.++.||.||..||+||.|..+ +||+..
T Consensus 605 Dl~~~~~--------------------v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 605 DLANGSL--------------------VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EcCCCcc--------------------hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9887665 56788999999999999999999999999999 999854
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=2.4e-24 Score=222.73 Aligned_cols=278 Identities=18% Similarity=0.255 Sum_probs=218.5
Q ss_pred ccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccc--------ceecCCCCeE-EEEEccCCCEEEE
Q 001202 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI--------DKELGSGDAV-CASIAPEQQILAV 273 (1124)
Q Consensus 203 ~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~--------~~~~gh~~~v-~va~spdg~lLAs 273 (1124)
.+.+|...|+.+...+ .+-..++.++.|.++-+|+.... +.+.||.+.| .++.++||++..+
T Consensus 10 tl~gh~d~Vt~la~~~---------~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS 80 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKI---------KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS 80 (315)
T ss_pred eecCCCceEEEEEeec---------CCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe
Confidence 3556777777655442 23456777778888888876532 1237999999 9999999999999
Q ss_pred EecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCC-cCc
Q 001202 274 GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS-LSS 352 (1124)
Q Consensus 274 Gs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~-~~~ 352 (1124)
|+.||++++||+.+ ++..+.+. | |+..|.+++||||.+.++||+.|++|++|++-+.+. .++..++ .+.
T Consensus 81 ~swD~~lrlWDl~~-g~~t~~f~----G----H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~W 150 (315)
T KOG0279|consen 81 ASWDGTLRLWDLAT-GESTRRFV----G----HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREW 150 (315)
T ss_pred ccccceEEEEEecC-CcEEEEEE----e----cCCceEEEEecCCCceeecCCCcceeeeeeecccEE-EEEecCCCcCc
Confidence 99999999999998 77778887 6 999999999999999999999999999999998754 4444443 789
Q ss_pred eeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceE--EEEec-cceEEeeccCCceeeeEeeecCCeE
Q 001202 353 ISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRL 426 (1124)
Q Consensus 353 V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l 426 (1124)
|+++.|+|+. ....+++++ ++++|+.++.++.....||...+ +.+++ |..+++|+.||...+|++..+..
T Consensus 151 VscvrfsP~~--~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-- 226 (315)
T KOG0279|consen 151 VSCVRFSPNE--SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-- 226 (315)
T ss_pred EEEEEEcCCC--CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce--
Confidence 9999999985 226778877 99999999999999999998888 66777 88999999999999999988776
Q ss_pred EEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeEEEEcCCCcEE------EecCcCceeeeEEE
Q 001202 427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR------VFGDITQEQKIQSK 500 (1124)
Q Consensus 427 ~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~vlwd~~sg~wk------~f~~~~~e~~~~v~ 500 (1124)
..+.+|+.+|++++|+|+.-.|+.|...+..|||+.+++.- ..++.....+..|.
T Consensus 227 -------------------lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cl 287 (315)
T KOG0279|consen 227 -------------------LYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICL 287 (315)
T ss_pred -------------------eEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEE
Confidence 23567889999999999999999888887559999987631 11221222334578
Q ss_pred EEEecC--CEEEEEEEecCCCeEEEEEee
Q 001202 501 GLLWLG--KIIVVCNYIDSSNTYELLFYP 527 (1124)
Q Consensus 501 gl~W~~--~~liv~~~~~~~~~~elrly~ 527 (1124)
.++|.. ..|.++ +.+ .-||+|.
T Consensus 288 slaws~dG~tLf~g-~td----~~irv~q 311 (315)
T KOG0279|consen 288 SLAWSADGQTLFAG-YTD----NVIRVWQ 311 (315)
T ss_pred EEEEcCCCcEEEee-ecC----CcEEEEE
Confidence 899984 344444 422 2567664
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=5.8e-24 Score=219.87 Aligned_cols=277 Identities=17% Similarity=0.240 Sum_probs=216.7
Q ss_pred ecCCCCeE-EEEEccC-CCEEEEEecCCeEEEEEcCCC----CceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE
Q 001202 253 ELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAES----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (1124)
Q Consensus 253 ~~gh~~~v-~va~spd-g~lLAsGs~DgtV~vwd~~~~----~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs 326 (1124)
+.+|++.| .++..++ ...+.+++.|.++.+|++... +...+.+. | |.-.|..+..++||++..+++
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~----G----HsH~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT----G----HSHFVSDVVLSSDGNFALSAS 82 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee----c----cceEecceEEccCCceEEecc
Confidence 37899999 9999987 568999999999999998753 34455666 6 999999999999999999999
Q ss_pred CCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCC-cceE--EEEe
Q 001202 327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS-SERV--LIFS 400 (1124)
Q Consensus 327 ~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~-~~~v--~~~s 400 (1124)
.|+++++||+.+++..+.|.|| ...|.+++|+|+. ..++||+ ++++|+.-+...+....+. .+.| +.|+
T Consensus 83 wD~~lrlWDl~~g~~t~~f~GH-~~dVlsva~s~dn----~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfs 157 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRRFVGH-TKDVLSVAFSTDN----RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFS 157 (315)
T ss_pred ccceEEEEEecCCcEEEEEEec-CCceEEEEecCCC----ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEc
Confidence 9999999999999999999999 7889999999998 8899998 9999999988777776654 6777 5556
Q ss_pred cc---ceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-
Q 001202 401 FG---KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (1124)
Q Consensus 401 ~~---k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v- 476 (1124)
|. ..+++++.|+++++|++.+-+- ...+.+|++.++.+++||||..+|+||+||.+
T Consensus 158 P~~~~p~Ivs~s~DktvKvWnl~~~~l--------------------~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~ 217 (315)
T KOG0279|consen 158 PNESNPIIVSASWDKTVKVWNLRNCQL--------------------RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAM 217 (315)
T ss_pred CCCCCcEEEEccCCceEEEEccCCcch--------------------hhccccccccEEEEEECCCCCEEecCCCCceEE
Confidence 63 4689999999999999866443 56889999999999999999999999999999
Q ss_pred EEEcCCCcEEEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeCC-C--CCC---cceEEEeecCCccEEEE
Q 001202 477 LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-H--LDQ---SSLLCRKSLLAKPIVMD 550 (1124)
Q Consensus 477 lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~~-~--ld~---~~~l~~~~l~s~~l~l~ 550 (1124)
+||++.++. +.. -+..-.|..++..++-...|..... .|++|+.+ . .+. +...... -...|.+++
T Consensus 218 LwdL~~~k~-lys---l~a~~~v~sl~fspnrywL~~at~~----sIkIwdl~~~~~v~~l~~d~~g~s~-~~~~~~cls 288 (315)
T KOG0279|consen 218 LWDLNEGKN-LYS---LEAFDIVNSLCFSPNRYWLCAATAT----SIKIWDLESKAVVEELKLDGIGPSS-KAGDPICLS 288 (315)
T ss_pred EEEccCCce-eEe---ccCCCeEeeEEecCCceeEeeccCC----ceEEEeccchhhhhhcccccccccc-ccCCcEEEE
Confidence 999999874 221 1222346788888876655544322 49999884 1 111 1111100 012344443
Q ss_pred ----eeCCEEEEEEcCCeEEEEEEE
Q 001202 551 ----VYEDYILVTYRPFDVHIFHVK 571 (1124)
Q Consensus 551 ----~~~~~llv~~~d~~i~l~~~~ 571 (1124)
..|..|+..+.|+.|++|.+.
T Consensus 289 laws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 289 LAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEcCCCcEEEeeecCCcEEEEEee
Confidence 346678889999999999875
No 19
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.2e-24 Score=249.75 Aligned_cols=309 Identities=17% Similarity=0.236 Sum_probs=242.3
Q ss_pred EEEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEE-EecCCcEEEEEeCCCeEEEEEeeecCce
Q 001202 24 IIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAV-WSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (1124)
Q Consensus 24 iv~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~-wSPDg~~Lav~t~dg~l~i~~v~~~~~~ 102 (1124)
...+..++++|++..+.++.++|.+ ....... -+.-++++.+++ |-|+.+.+||+|..+.+++|++.+....
T Consensus 287 ~~~~~~~~~~l~vtaeQnl~l~d~~-~l~i~k~------ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ 359 (775)
T KOG0319|consen 287 LLAIESMSQLLLVTAEQNLFLYDED-ELTIVKQ------IVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ 359 (775)
T ss_pred ceeccccCceEEEEccceEEEEEcc-ccEEehh------hcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE
Confidence 3556677888888889999999885 3322211 122367788776 5788899999999999999988765443
Q ss_pred eecCCCCCCCcceeeEEEEeeeeeecccccceEEEEe--ecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccc
Q 001202 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1124)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~ 180 (1124)
+ +.+++..|.++. .+|..++.|++|.++++|..+........
T Consensus 360 i------------------------i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~------------ 403 (775)
T KOG0319|consen 360 I------------------------IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLC------------ 403 (775)
T ss_pred E------------------------EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhh------------
Confidence 2 223444455554 45668888999999998766321110000
Q ss_pred cccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce------e-
Q 001202 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK------E- 253 (1124)
Q Consensus 181 ~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~------~- 253 (1124)
.-...+|...|..+..+.. .-.++++++.|.++++|+....+. +
T Consensus 404 --------------------~a~~~gH~~svgava~~~~---------~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~ 454 (775)
T KOG0319|consen 404 --------------------VAQANGHTNSVGAVAGSKL---------GASFFVSVSQDCTLKLWDLPKSKETAFPIVLT 454 (775)
T ss_pred --------------------hhhhcccccccceeeeccc---------CccEEEEecCCceEEEecCCCcccccccceeh
Confidence 0012356667766555421 124678888999999998876211 1
Q ss_pred -----cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC
Q 001202 254 -----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1124)
Q Consensus 254 -----~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~ 327 (1124)
..|.+-| ||+++|+.++||+||.|.+.+||+++. .....+++ | |+.+|.||.|+|..+.+||+|.
T Consensus 455 ~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~vLs----G----H~RGvw~V~Fs~~dq~laT~Sg 525 (775)
T KOG0319|consen 455 CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLS----G----HTRGVWCVSFSKNDQLLATCSG 525 (775)
T ss_pred hhHHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEEEee----C----CccceEEEEeccccceeEeccC
Confidence 4699999 999999999999999999999999996 88888998 7 9999999999999999999999
Q ss_pred CCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec---
Q 001202 328 SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--- 401 (1124)
Q Consensus 328 Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~--- 401 (1124)
|+|||||++.+..|+.||.|| .+.|.-+.|-.++ ..++|+. -+++|+..++.+.++...|.++||+++.
T Consensus 526 D~TvKIW~is~fSClkT~eGH-~~aVlra~F~~~~----~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~ 600 (775)
T KOG0319|consen 526 DKTVKIWSISTFSCLKTFEGH-TSAVLRASFIRNG----KQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPL 600 (775)
T ss_pred CceEEEEEeccceeeeeecCc-cceeEeeeeeeCC----cEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCc
Confidence 999999999999999999999 8899999998888 7888765 8899999999999999999999999987
Q ss_pred cceEEeeccCCceeeeE
Q 001202 402 GKCCLNRGVSGMTYARQ 418 (1124)
Q Consensus 402 ~k~~~s~s~d~~v~~w~ 418 (1124)
...++||+.|+.+..|.
T Consensus 601 ~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 601 LDMFVTGGGDGRIIFWK 617 (775)
T ss_pred cceeEecCCCeEEEEee
Confidence 45679999999999986
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.93 E-value=5.1e-25 Score=255.88 Aligned_cols=243 Identities=18% Similarity=0.238 Sum_probs=197.7
Q ss_pred ccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCC
Q 001202 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRG 278 (1124)
Q Consensus 203 ~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~Dg 278 (1124)
.+.+|.++|....|+ ||.+++++++.|+++++|...+..+. .||..+| +|.|+|.|-++|+|+.|+
T Consensus 446 ~L~GH~GPVyg~sFs----------Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~ 515 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFS----------PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQ 515 (707)
T ss_pred EeecCCCceeeeeec----------ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCc
Confidence 366888888665554 89999999999999999999877654 7999999 999999999999999999
Q ss_pred eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEE
Q 001202 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (1124)
Q Consensus 279 tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~ 358 (1124)
+-++|..+. ....+.+. | |-+-|.|++|+|+..++|+||.|++||+||+.+|..+..+.|| .++|++++|
T Consensus 516 tArLWs~d~-~~PlRifa----g----hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~V~al~~ 585 (707)
T KOG0263|consen 516 TARLWSTDH-NKPLRIFA----G----HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGPVTALAF 585 (707)
T ss_pred eeeeeeccc-CCchhhhc----c----cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCceEEEEE
Confidence 999999987 66677666 6 9999999999999999999999999999999999999999998 899999999
Q ss_pred cCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEE----
Q 001202 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLV---- 428 (1124)
Q Consensus 359 sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l---- 428 (1124)
||+| .+++||+ .+++||..+++++....+|.+.|..++| +..+++++.|+++++||+.+.......
T Consensus 586 Sp~G----r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~ 661 (707)
T KOG0263|consen 586 SPCG----RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHIS 661 (707)
T ss_pred cCCC----ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccc
Confidence 9999 9999988 8999999999999999999888876666 888999999999999997654432110
Q ss_pred -eecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEE
Q 001202 429 -VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA 470 (1124)
Q Consensus 429 -~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAva 470 (1124)
+.+....... ....+..+|...+-||..+.|....-.+++|
T Consensus 662 ~~~~~~~~~~~-~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 662 TSNSAITQENN-ASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred cccccccccCC-CCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 0000000000 0111234555666788888888655445444
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.93 E-value=8.5e-24 Score=219.64 Aligned_cols=278 Identities=16% Similarity=0.161 Sum_probs=216.4
Q ss_pred cccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecC
Q 001202 202 DHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRR 277 (1124)
Q Consensus 202 ~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~D 277 (1124)
..+.+|...|.+|.|+ +|++.+++++.|+.+-+||..+..+. .-....| .+||+|.|+++|.|+-|
T Consensus 49 r~LkGH~~Ki~~~~ws----------~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd 118 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWS----------TDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD 118 (343)
T ss_pred EEecccccceeeeEec----------CCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcC
Confidence 4577899999998888 66777777777777777988766443 2335678 99999999999999999
Q ss_pred CeEEEEEcCCC--C---ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCc
Q 001202 278 GVVELYDLAES--A---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS 352 (1124)
Q Consensus 278 gtV~vwd~~~~--~---~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~ 352 (1124)
....||++... . ...+.+. | |+|.+.|+.|-+|+ .|++|+.|.+..+||+++++.+..+.|| ...
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~----g----HtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH-~gD 188 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELA----G----HTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGH-TGD 188 (343)
T ss_pred ceeEEEecccccccccceeeeeec----C----ccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCC-ccc
Confidence 99999999852 1 1223344 5 99999999998854 6889999999999999999999999999 788
Q ss_pred eeeeEEcC-CCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceE--EEEec-cceEEeeccCCceeeeEeeecCCe
Q 001202 353 ISSPIVKP-NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDR 425 (1124)
Q Consensus 353 V~s~~~sp-~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~ 425 (1124)
|-++.++| ++ +.++||+ +.++||...+....+..+|+..| +.|-| |..++||+.|++.+++|+....+
T Consensus 189 V~slsl~p~~~----ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~- 263 (343)
T KOG0286|consen 189 VMSLSLSPSDG----NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE- 263 (343)
T ss_pred EEEEecCCCCC----CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-
Confidence 99999999 55 7888887 89999999999999999999999 44444 88999999999999999876544
Q ss_pred EEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEe
Q 001202 426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW 504 (1124)
Q Consensus 426 l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W 504 (1124)
+.+|.. ..-+.+|++++||..|++|..|..|.++ +||...++-- -.-..||+.+.+.++.-
T Consensus 264 ~a~ys~-----------------~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~v-g~L~GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 264 LAVYSH-----------------DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERV-GVLAGHENRVSCLGVSP 325 (343)
T ss_pred Eeeecc-----------------CcccCCceeEEEcccccEEEeeecCCceeEeeccccceE-EEeeccCCeeEEEEECC
Confidence 333322 1235689999999999999999999999 9998766522 11235666555555544
Q ss_pred cCCEEEEEEEecCCCeEEEEEee
Q 001202 505 LGKIIVVCNYIDSSNTYELLFYP 527 (1124)
Q Consensus 505 ~~~~liv~~~~~~~~~~elrly~ 527 (1124)
.+--+..+ +-+..+|+|.
T Consensus 326 DG~av~Tg-----SWDs~lriW~ 343 (343)
T KOG0286|consen 326 DGMAVATG-----SWDSTLRIWA 343 (343)
T ss_pred CCcEEEec-----chhHheeecC
Confidence 44334333 3345788873
No 22
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=2.9e-25 Score=239.37 Aligned_cols=276 Identities=17% Similarity=0.200 Sum_probs=218.0
Q ss_pred cceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEE--EeecCCeE
Q 001202 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHM 145 (1124)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~d~~~l 145 (1124)
-.+..|.|.|+|+.|+||+..|.+.+|+... +.+...+..++..|++ ++.++..+
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-----------------------fnFEtilQaHDs~Vr~m~ws~~g~wm 153 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-----------------------FNFETILQAHDSPVRTMKWSHNGTWM 153 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCce-----------------------eeHHHHhhhhcccceeEEEccCCCEE
Confidence 4567899999999999999999999999742 2333334445555555 55677888
Q ss_pred EEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEE
Q 001202 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (1124)
Q Consensus 146 lv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~ 225 (1124)
+.|..+|.|+. |+...+.... .-..+...|++++||
T Consensus 154 iSgD~gG~iKy--WqpnmnnVk~----------------------------------~~ahh~eaIRdlafS-------- 189 (464)
T KOG0284|consen 154 ISGDKGGMIKY--WQPNMNNVKI----------------------------------IQAHHAEAIRDLAFS-------- 189 (464)
T ss_pred EEcCCCceEEe--cccchhhhHH----------------------------------hhHhhhhhhheeccC--------
Confidence 88888999887 6665443221 112345778887777
Q ss_pred EecCCcEEEEEecCCceEeeeccccce---ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCC
Q 001202 226 LYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (1124)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~wd~~~~~~---~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g 301 (1124)
|+...++++++|+++++||...++. +.||.--| |++|+|...+||+|+.|..|++||-.+ ++++.++. +
T Consensus 190 --pnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~tlh----~ 262 (464)
T KOG0284|consen 190 --PNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLATLH----G 262 (464)
T ss_pred --CCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC-cchhhhhh----h
Confidence 5566788889999999999886643 47999888 999999999999999999999999998 88888887 5
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCC
Q 001202 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEY 381 (1124)
Q Consensus 302 ~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~ 381 (1124)
|+..|..+.|+|+|.+|+++|+|..++++|+.+.+.+.++++| ...|+++.|+|-. +-
T Consensus 263 ----HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H-kkdv~~~~WhP~~----~~------------- 320 (464)
T KOG0284|consen 263 ----HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH-KKDVTSLTWHPLN----ES------------- 320 (464)
T ss_pred ----ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc-hhhheeecccccc----cc-------------
Confidence 9999999999999999999999999999999988888899998 6777777777754 11
Q ss_pred CCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEc
Q 001202 382 GYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAAS 461 (1124)
Q Consensus 382 ~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S 461 (1124)
.+.+|+.||.+..|.+...+. ++.--.+|...|++++++
T Consensus 321 ----------------------lftsgg~Dgsvvh~~v~~~~p-------------------~~~i~~AHd~~iwsl~~h 359 (464)
T KOG0284|consen 321 ----------------------LFTSGGSDGSVVHWVVGLEEP-------------------LGEIPPAHDGEIWSLAYH 359 (464)
T ss_pred ----------------------ceeeccCCCceEEEecccccc-------------------ccCCCcccccceeeeecc
Confidence 225677788888887652222 122334788999999999
Q ss_pred cCCCEEEEEcCCCeE-EEEc
Q 001202 462 KDGMFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 462 pdG~~lAvag~dG~v-lwd~ 480 (1124)
|=|..||+|+.|.++ .|..
T Consensus 360 PlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 360 PLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccceeEeecCCCcceeeecc
Confidence 999999999999999 8864
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.93 E-value=1e-23 Score=231.14 Aligned_cols=328 Identities=16% Similarity=0.161 Sum_probs=251.3
Q ss_pred hhcceeEEEEecCCc-EEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEe--ecC
Q 001202 66 REGENLQAVWSPDTK-LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SDN 142 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg~-~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~d~ 142 (1124)
+..++...+|+|-.. .+|++..+-..++|++......... +..+. ..+ ...++-... ...|++++ .+|
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~----q~~lr-h~~--~~~~~s~~~--nkdVT~L~Wn~~G 247 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST----QLVLR-HCI--REGGKSVPS--NKDVTSLDWNNDG 247 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccch----hhhhh-hhh--hhhcccCCc--cCCcceEEecCCC
Confidence 456788999999766 9999999999999999742111000 00000 000 000000111 12345544 457
Q ss_pred CeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcce
Q 001202 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (1124)
Q Consensus 143 ~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~ 222 (1124)
..|++|..||.+++|.-++.... .+..|+++|.++.|+
T Consensus 248 ~~LatG~~~G~~riw~~~G~l~~-------------------------------------tl~~HkgPI~slKWn----- 285 (524)
T KOG0273|consen 248 TLLATGSEDGEARIWNKDGNLIS-------------------------------------TLGQHKGPIFSLKWN----- 285 (524)
T ss_pred CeEEEeecCcEEEEEecCchhhh-------------------------------------hhhccCCceEEEEEc-----
Confidence 88999999999998655544221 245788999888887
Q ss_pred EEEEecCCcEEEEEecCCceEeeecccccee---cCCCCe-EEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeec
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDA-VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~-v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~ 298 (1124)
.+|.++++++.|+++.+||..+++.. .-|..+ +.|.|-.+ .-+|+.+.||.|+|+.+.. ..++.++.
T Consensus 286 -----k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~-~~P~~t~~-- 356 (524)
T KOG0273|consen 286 -----KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGE-DRPVKTFI-- 356 (524)
T ss_pred -----CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecC-CCcceeee--
Confidence 78999999999999999999887654 345555 36666443 4588999999999999987 77888888
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCC-----CcceEEEee
Q 001202 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC-----KYEPLMSGT 373 (1124)
Q Consensus 299 ~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~-----~~~~l~sg~ 373 (1124)
| |.|+|.++.|.|.|..|+|+++|+|++||+.........|..| ...|..+.|+|++.- .+..+++.+
T Consensus 357 --G----H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H-skei~t~~wsp~g~v~~n~~~~~~l~sas 429 (524)
T KOG0273|consen 357 --G----HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH-SKEIYTIKWSPTGPVTSNPNMNLMLASAS 429 (524)
T ss_pred --c----ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh-ccceeeEeecCCCCccCCCcCCceEEEee
Confidence 6 9999999999999999999999999999999888888999988 778999999998762 223555554
Q ss_pred ---eEEEEeCCCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeeccccee
Q 001202 374 ---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (1124)
Q Consensus 374 ---~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~ 447 (1124)
++++|+++.+.++.+...|...|++++| ++.+++|+.|+.+++|+...+.. ...
T Consensus 430 ~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l--------------------~~s 489 (524)
T KOG0273|consen 430 FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL--------------------VKS 489 (524)
T ss_pred cCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe--------------------eEe
Confidence 9999999999999999999999976666 89999999999999999877654 344
Q ss_pred eccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcC
Q 001202 448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (1124)
Q Consensus 448 ~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~ 481 (1124)
|.+ ++-|..++|+.+|.+|.++-.||.+ +-|++
T Consensus 490 ~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 490 YQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 544 4459999999999999999999998 87764
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.6e-23 Score=211.72 Aligned_cols=270 Identities=13% Similarity=0.238 Sum_probs=213.1
Q ss_pred CCCCceEEEEEecCCcceEEEEecC-CcEEEEEecCCceEeeecccccee-------cCCCCeE-EEEEccCCCEEEEEe
Q 001202 205 FPISSAIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAV-CASIAPEQQILAVGT 275 (1124)
Q Consensus 205 ~~~~~~I~~i~~s~~~~~~~~~s~d-G~~~~~~~~d~~i~~wd~~~~~~~-------~gh~~~v-~va~spdg~lLAsGs 275 (1124)
.+|+..+-.++++ |- |.++++++.|+.+++|+...+..+ .+|..+| ++||+|.|++||+|+
T Consensus 11 ~gh~~r~W~~awh----------p~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS 80 (312)
T KOG0645|consen 11 SGHKDRVWSVAWH----------PGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS 80 (312)
T ss_pred cCCCCcEEEEEec----------cCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee
Confidence 3555566555555 55 889999999999999987743222 4799999 999999999999999
Q ss_pred cCCeEEEEEcCCC-CceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC---eeeEEeccCCcC
Q 001202 276 RRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLS 351 (1124)
Q Consensus 276 ~DgtV~vwd~~~~-~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~---~l~~tl~~h~~~ 351 (1124)
-|+++.||.-.+. -+++.++. | |...|.|++||++|++||++++|+.|-||.+... .+...|..| +.
T Consensus 81 FD~t~~Iw~k~~~efecv~~lE----G----HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-tq 151 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEFECVATLE----G----HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQ 151 (312)
T ss_pred ccceEEEeecCCCceeEEeeee----c----cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-cc
Confidence 9999999986541 25667777 7 9999999999999999999999999999999744 467788888 78
Q ss_pred ceeeeEEcCCCCCCcceEEEee---eEEEEeCC---CCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeec
Q 001202 352 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEY---GYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYG 422 (1124)
Q Consensus 352 ~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~---~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~ 422 (1124)
.|..+.|+|.. ..|+|++ ++++|.-+ ..++..++.+|...|+++.| |..+++++.|+++++|....+
T Consensus 152 DVK~V~WHPt~----dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 152 DVKHVIWHPTE----DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD 227 (312)
T ss_pred cccEEEEcCCc----ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC
Confidence 89999999987 8889887 99999765 45788889999999988777 778999999999999985432
Q ss_pred CCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC----CcEEEecCcCceeee
Q 001202 423 EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ----KKWRVFGDITQEQKI 497 (1124)
Q Consensus 423 ~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s----g~wk~f~~~~~e~~~ 497 (1124)
-. .-|.+++..+++. + ..||+||.|+.+ +|.... ..|+++....+.++.
T Consensus 228 ~~------------------------~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~ 281 (312)
T KOG0645|consen 228 LS------------------------GMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV 281 (312)
T ss_pred cc------------------------hhcccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc
Confidence 11 2377889999998 4 479999999998 887654 467776644444445
Q ss_pred EEEEEEecC---CEEEEEEEecCCCeEEEEEeeC
Q 001202 498 QSKGLLWLG---KIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 498 ~v~gl~W~~---~~liv~~~~~~~~~~elrly~~ 528 (1124)
.|..+.|.+ +.|++| . .+..+++|..
T Consensus 282 dVNsV~w~p~~~~~L~s~-~----DDG~v~~W~l 310 (312)
T KOG0645|consen 282 DVNSVQWNPKVSNRLASG-G----DDGIVNFWEL 310 (312)
T ss_pred ccceEEEcCCCCCceeec-C----CCceEEEEEe
Confidence 677889986 344444 2 2357888854
No 25
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=7.8e-22 Score=226.37 Aligned_cols=455 Identities=15% Similarity=0.165 Sum_probs=297.7
Q ss_pred EEEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCcee
Q 001202 25 IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (1124)
Q Consensus 25 v~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~ 103 (1124)
++-++|.-+||++. |+.|+||+.. ....+..+.. +...++.+.|+.+|.+||+|+.|+.|.+||+-...-..
T Consensus 71 l~~~~d~l~lAVGYaDGsVqif~~~-s~~~~~tfng------HK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~ 143 (888)
T KOG0306|consen 71 LRSSDDILLLAVGYADGSVQIFSLE-SEEILITFNG------HKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF 143 (888)
T ss_pred eeccCCcceEEEEecCceEEeeccC-CCceeeeecc------cccceEEEEEcccCceEeecCCCccEEEEEeccceeeE
Confidence 44467777889876 5689999986 4443333321 22346788999999999999999999999996544333
Q ss_pred ecCCCCC---------CCccee-------eEEEEeeeeeecc---cccceEEEEeecCCeEEEEecCCcEEEEeccCccc
Q 001202 104 QIGGKQP---------SGLFFI-------KISLVLNEQLPFA---EKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFY 164 (1124)
Q Consensus 104 ~~~~~~~---------~~~~~~-------~~~~~~~~~~~~~---~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~ 164 (1124)
...+|.. .+..+- .--|.+.-+..+. .+.+.+.+++.+++.+++++.|+.+.+|...-+..
T Consensus 144 rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D 223 (888)
T KOG0306|consen 144 RLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDD 223 (888)
T ss_pred EeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccc
Confidence 3333321 010110 1123333332222 33456777778888999999999888865511110
Q ss_pred c-------------ce-------eec-----------cCCC----Cccccccc-----------------cc------cC
Q 001202 165 G-------------AF-------ELV-----------HSSN----DSSVAALS-----------------HH------FP 186 (1124)
Q Consensus 165 ~-------------~~-------~l~-----------~~~~----~~~~i~~i-----------------~f------s~ 186 (1124)
. .+ .++ ++.. ..+.++.- .. +.
T Consensus 224 ~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v 303 (888)
T KOG0306|consen 224 EKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDV 303 (888)
T ss_pred cccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccch
Confidence 0 00 000 0000 00000000 00 00
Q ss_pred CCC-------cccccCCCCeee-------------cccCCCCceEEEEEe------------------cCCcceEEEEec
Q 001202 187 SNG-------LASVDTSGAFVS-------------DHKFPISSAIIWLEL------------------CLPMRLLFVLYS 228 (1124)
Q Consensus 187 ~~q-------l~s~~~~~~~~~-------------~~~~~~~~~I~~i~~------------------s~~~~~~~~~s~ 228 (1124)
+.. +.+...+..... ..+........+++. +..-...+++++
T Consensus 304 ~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~ 383 (888)
T KOG0306|consen 304 EKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS 383 (888)
T ss_pred hhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec
Confidence 000 000000000000 001111122222222 222235677777
Q ss_pred CCcEEEEEecCCceEeeecccccee--cCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCC
Q 001202 229 NGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (1124)
Q Consensus 229 dG~~~~~~~~d~~i~~wd~~~~~~~--~gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h 306 (1124)
|..++++++ .+.+++|+..+.++. .+.....|..|-|.++++++|..+|.+.+||+.. ..++.++. +|
T Consensus 384 d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-~~l~Eti~--------AH 453 (888)
T KOG0306|consen 384 DSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLAS-ASLVETIR--------AH 453 (888)
T ss_pred CceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeeh-hhhhhhhh--------cc
Confidence 877776654 567999999888776 3333344999999999999999999999999988 66666655 49
Q ss_pred CCCeEEEEECCCCCEEEEEECCCcEEEEEcC------CCe-ee------EEeccCCcCceeeeEEcCCCCCCcceEEEee
Q 001202 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS------GCR-LM------STIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1124)
Q Consensus 307 ~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~------~~~-l~------~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~ 373 (1124)
.|.+++++-+|||..+++||.|.+|++||.. +.+ -+ .+++- .+.|.++.+|||+ .+++-|-
T Consensus 454 dgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel--~ddvL~v~~Spdg----k~LaVsL 527 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL--EDDVLCVSVSPDG----KLLAVSL 527 (888)
T ss_pred ccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec--cccEEEEEEcCCC----cEEEEEe
Confidence 9999999999999999999999999999972 111 11 12221 4679999999999 8887665
Q ss_pred ---eEEEEeCCCCeEEEEecCCcceEEEE--ec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeeccccee
Q 001202 374 ---SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (1124)
Q Consensus 374 ---~i~~W~~~~~~l~~~~~~~~~~v~~~--s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~ 447 (1124)
+++++..++-+.+...-||.-+|.++ ++ ++.++|||.|.++++|-+..|+. ..+
T Consensus 528 LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC--------------------HKS 587 (888)
T KOG0306|consen 528 LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC--------------------HKS 587 (888)
T ss_pred ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh--------------------hhh
Confidence 99999999999999999999998555 55 89999999999999999999887 678
Q ss_pred eccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEec-CcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEE
Q 001202 448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFG-DITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLF 525 (1124)
Q Consensus 448 ~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~-~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrl 525 (1124)
+.+|...|.++.|-|....+.++|+||.+ -||-.. ...+. -..|-.++-+..+.-.|++++.+ +.+..||+
T Consensus 588 ~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k--Fe~iq~L~~H~~ev~cLav~~~G~~vvs~-----shD~sIRl 660 (888)
T KOG0306|consen 588 FFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK--FEEIQKLDGHHSEVWCLAVSPNGSFVVSS-----SHDKSIRL 660 (888)
T ss_pred hhcccCceeEEEEcccceeEEEecCcceEEeechhh--hhhheeeccchheeeeeEEcCCCCeEEec-----cCCceeEe
Confidence 89999999999999999999999999999 998643 22221 11222223344455567788887 44568999
Q ss_pred eeCC
Q 001202 526 YPRY 529 (1124)
Q Consensus 526 y~~~ 529 (1124)
|.+.
T Consensus 661 wE~t 664 (888)
T KOG0306|consen 661 WERT 664 (888)
T ss_pred eecc
Confidence 9873
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.9e-23 Score=234.88 Aligned_cols=306 Identities=15% Similarity=0.147 Sum_probs=230.0
Q ss_pred EEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeecc
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~ 299 (1124)
+.|-+-.+.+++|++|+.|++++..+.++. ..|.|-+ |++++|...++.++|.|-+|++||.+..-.+.+++.
T Consensus 61 ~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe--- 137 (794)
T KOG0276|consen 61 AKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE--- 137 (794)
T ss_pred heeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc---
Confidence 344456677888899999999998887765 6899999 999999999999999999999999998667888888
Q ss_pred CCCCCCCCCCeEEEEECC-CCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eE
Q 001202 300 WGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM 375 (1124)
Q Consensus 300 ~g~~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i 375 (1124)
| |+--|.+++|.| |.+.+|||+-|+||+||++....+..||.|| ...|+++.+.+.++ ..+++||+ ++
T Consensus 138 -G----H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~~gd--kpylIsgaDD~ti 209 (794)
T KOG0276|consen 138 -G----HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGH-EKGVNCVDYYTGGD--KPYLISGADDLTI 209 (794)
T ss_pred -C----cceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecc-ccCcceEEeccCCC--cceEEecCCCceE
Confidence 7 999999999999 6779999999999999999999999999998 88999999988763 36789988 99
Q ss_pred EEEeCCCCeEEEEecCCcceE--EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCC
Q 001202 376 MQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (1124)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~ 452 (1124)
++||..+..++.+..||...| ..|.+ -..++||+.||++++|...+-.. -.++.-.-
T Consensus 210 KvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l--------------------E~tLn~gl 269 (794)
T KOG0276|consen 210 KVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL--------------------EKTLNYGL 269 (794)
T ss_pred EEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh--------------------hhhhhcCC
Confidence 999999999999999999888 55555 66789999999999999544222 22333344
Q ss_pred CceEEEEEccCCCEEEEEcCCCeEEEEcCCCcEEEecCcCceeeeEEE-EEEecCCEEEEEEEecCC-CeEEEEEeeCCC
Q 001202 453 WPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSK-GLLWLGKIIVVCNYIDSS-NTYELLFYPRYH 530 (1124)
Q Consensus 453 ~~I~~va~SpdG~~lAvag~dG~vlwd~~sg~wk~f~~~~~e~~~~v~-gl~W~~~~liv~~~~~~~-~~~elrly~~~~ 530 (1124)
..|+|++-.+.++.+|+|...|.+...+ +.+...-.|... .+.|.++.-|.+.....- ...++.=-.+-+
T Consensus 270 eRvW~I~~~k~~~~i~vG~Deg~i~v~l--------greeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~ 341 (794)
T KOG0276|consen 270 ERVWCIAAHKGDGKIAVGFDEGSVTVKL--------GREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLP 341 (794)
T ss_pred ceEEEEeecCCCCeEEEeccCCcEEEEc--------cCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCcccc
Confidence 6799999999999999999999986554 222222233333 478876544433221111 111221111112
Q ss_pred CCCcceEEEeecCCccEEEEeeCCEEEEEEcCCeEEEEEE
Q 001202 531 LDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHV 570 (1124)
Q Consensus 531 ld~~~~l~~~~l~s~~l~l~~~~~~llv~~~d~~i~l~~~ 570 (1124)
|.-..+.... +-.+.+..+++|..++| +.||...||.-
T Consensus 342 LsvKeLgs~e-iyPq~L~hsPNGrfV~V-cgdGEyiIyTa 379 (794)
T KOG0276|consen 342 LSVKELGSVE-IYPQTLAHSPNGRFVVV-CGDGEYIIYTA 379 (794)
T ss_pred chhhhccccc-cchHHhccCCCCcEEEE-ecCccEEEEEe
Confidence 2222333333 22346778888777666 78999999964
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.92 E-value=7.8e-25 Score=230.68 Aligned_cols=272 Identities=15% Similarity=0.224 Sum_probs=221.1
Q ss_pred cceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceE
Q 001202 132 GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (1124)
Q Consensus 132 ~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I 211 (1124)
..+|.|+..|.+.|+.|..|.+|.+ ||....... ..+.+|.+.|
T Consensus 197 skgVYClQYDD~kiVSGlrDnTiki--WD~n~~~c~----------------------------------~~L~GHtGSV 240 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKI--WDKNSLECL----------------------------------KILTGHTGSV 240 (499)
T ss_pred CCceEEEEecchhhhcccccCceEE--eccccHHHH----------------------------------HhhhcCCCcE
Confidence 3469999999999999999999998 664432211 2467889999
Q ss_pred EEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCC
Q 001202 212 IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE 287 (1124)
Q Consensus 212 ~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~ 287 (1124)
.++.|+ .+++++|+.|.|+++||..+++.+ .+|+++| .+.||.. ++++++.|.+++|||+..
T Consensus 241 LCLqyd------------~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng--~mvtcSkDrsiaVWdm~s 306 (499)
T KOG0281|consen 241 LCLQYD------------ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG--YMVTCSKDRSIAVWDMAS 306 (499)
T ss_pred Eeeecc------------ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC--EEEEecCCceeEEEeccC
Confidence 888886 567899999999999999998875 6899999 9999854 799999999999999987
Q ss_pred CC--ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCC
Q 001202 288 SA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK 365 (1124)
Q Consensus 288 ~~--~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~ 365 (1124)
+. .+.+.+. | |..+|+.+.|+ .+++++++.|++|++|++.++..+.++.+| ...+.++.+ .+
T Consensus 307 ps~it~rrVLv----G----HrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gH-kRGIAClQY--r~--- 370 (499)
T KOG0281|consen 307 PTDITLRRVLV----G----HRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGH-KRGIACLQY--RD--- 370 (499)
T ss_pred chHHHHHHHHh----h----hhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcc-cccceehhc--cC---
Confidence 33 2223344 5 99999999995 569999999999999999999999999998 566665543 23
Q ss_pred cceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeee
Q 001202 366 YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (1124)
Q Consensus 366 ~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~ 441 (1124)
..++||+ ++++|+++.|.++.+..||.+-|-++.| .+.+++|+.||++++|++..+.+.-... .
T Consensus 371 -rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~-----------~ 438 (499)
T KOG0281|consen 371 -RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPA-----------S 438 (499)
T ss_pred -eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccc-----------c
Confidence 7888988 9999999999999999999999988999 8899999999999999998877610000 0
Q ss_pred cccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCC
Q 001202 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 442 ~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg 483 (1124)
.-+..+...|.+.|..+.| |...+++++.|.+| +||...+
T Consensus 439 ~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 439 TLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred chHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 0012345578889999998 56788888999999 9998765
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.91 E-value=9.4e-23 Score=223.63 Aligned_cols=314 Identities=16% Similarity=0.212 Sum_probs=218.6
Q ss_pred eEEEEeeCCe-EEEEEcC-CcEEEEecCCCceeEEEE---eeCh-----HHHhhhcceeEEEEecCCcEEEEEeCCCeEE
Q 001202 23 QIIYFKVNNG-LLLIASP-CHIELWSSSQHKVRLGKY---KRDS-----ESVQREGENLQAVWSPDTKLIAVVTSSLYLH 92 (1124)
Q Consensus 23 ~iv~fS~dg~-llA~~~~-~~l~IW~~~~~~~~l~~~---~r~~-----~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~ 92 (1124)
-+.+++|-.. ++|+++. .+.+||+.. ...-.+.. .|.. ++....-.++++.|+.||..||+|..+|.++
T Consensus 182 ~~~~WnP~~~~llasg~~~s~ari~~l~-e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~r 260 (524)
T KOG0273|consen 182 FICAWNPLRDGLLASGSGDSTARIWNLL-ENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEAR 260 (524)
T ss_pred EEEecCchhhhhhhccCCccceeeeeeh-hhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEE
Confidence 3345678766 8888765 579999985 21111100 1111 1222234578999999999999999999999
Q ss_pred EEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEee--cCCeEEEEecCCcEEEEeccCccccceeec
Q 001202 93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS--DNKHMLLGLSDGSLYSISWKGEFYGAFELV 170 (1124)
Q Consensus 93 i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~ 170 (1124)
||+...+... .+..+.++|.++-. .+.+|+.++.||++.+ ||..++...+.
T Consensus 261 iw~~~G~l~~------------------------tl~~HkgPI~slKWnk~G~yilS~~vD~ttil--wd~~~g~~~q~- 313 (524)
T KOG0273|consen 261 IWNKDGNLIS------------------------TLGQHKGPIFSLKWNKKGTYILSGGVDGTTIL--WDAHTGTVKQQ- 313 (524)
T ss_pred EEecCchhhh------------------------hhhccCCceEEEEEcCCCCEEEeccCCccEEE--EeccCceEEEe-
Confidence 9998753211 11122334444443 3567999999999876 77544332210
Q ss_pred cCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccc
Q 001202 171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI 250 (1124)
Q Consensus 171 ~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~ 250 (1124)
...+...-.+++|-.. ..++.-++||.+.++......+.
T Consensus 314 ---------------------------------f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~------- 352 (524)
T KOG0273|consen 314 ---------------------------------FEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPV------- 352 (524)
T ss_pred ---------------------------------eeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcc-------
Confidence 0011111112233211 13445556666666544322211
Q ss_pred ceecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCC---------C
Q 001202 251 DKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN---------S 320 (1124)
Q Consensus 251 ~~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG---------~ 320 (1124)
+...||.+.| ++.|+|.|.+||+++.|+|++||++.. ....+.+. + |...|..+.|||+| .
T Consensus 353 ~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~----~----Hskei~t~~wsp~g~v~~n~~~~~ 423 (524)
T KOG0273|consen 353 KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQ----A----HSKEIYTIKWSPTGPVTSNPNMNL 423 (524)
T ss_pred eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC-Ccchhhhh----h----hccceeeEeecCCCCccCCCcCCc
Confidence 1237899999 999999999999999999999999877 66666666 4 89999999999964 5
Q ss_pred EEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceE-
Q 001202 321 AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV- 396 (1124)
Q Consensus 321 ~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v- 396 (1124)
.+++++.|++|++||+..+.++++|..| ..+|.+++|+|++ .++++|+ .+.+|+...++++....+ .+.|
T Consensus 424 ~l~sas~dstV~lwdv~~gv~i~~f~kH-~~pVysvafS~~g----~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~If 497 (524)
T KOG0273|consen 424 MLASASFDSTVKLWDVESGVPIHTLMKH-QEPVYSVAFSPNG----RYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIF 497 (524)
T ss_pred eEEEeecCCeEEEEEccCCceeEeeccC-CCceEEEEecCCC----cEEEecCCCCeeEeccccchheeEeecC-CCeEE
Confidence 8999999999999999999999999888 8899999999999 9999998 889999999999998877 4556
Q ss_pred -EEEec-cceEEeeccCCceeeeEee
Q 001202 397 -LIFSF-GKCCLNRGVSGMTYARQVI 420 (1124)
Q Consensus 397 -~~~s~-~k~~~s~s~d~~v~~w~l~ 420 (1124)
+++++ +..+...-.|+.+.+-+++
T Consensus 498 el~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 498 ELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEcCCCCEEEEEecCCCceEEEec
Confidence 55666 6666666667777766643
No 29
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=2.1e-21 Score=222.94 Aligned_cols=308 Identities=13% Similarity=0.124 Sum_probs=236.3
Q ss_pred EEEEecCCcEEEEeccCccccc---e---eeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecC
Q 001202 145 MLLGLSDGSLYSISWKGEFYGA---F---ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL 218 (1124)
Q Consensus 145 llv~t~dg~v~~~~Wd~~~~~~---~---~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~ 218 (1124)
-++...+.++..++.+...... . ++ ..+.|...++.+.++.++.+.. +..+....+|......+|+.+.-.
T Consensus 337 ~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i-~~~GHR~dVRsl~vS~d~~~~~-Sga~~SikiWn~~t~kciRTi~~~- 413 (888)
T KOG0306|consen 337 TLVLLANNTVEWYSLENSGKTSPEADRTSNI-EIGGHRSDVRSLCVSSDSILLA-SGAGESIKIWNRDTLKCIRTITCG- 413 (888)
T ss_pred eEEEeecCceEEEEeccCCCCCcccccccee-eeccchhheeEEEeecCceeee-ecCCCcEEEEEccCcceeEEeccc-
Confidence 4455788888777666521110 0 01 1345666788888888776322 222234455666667778776544
Q ss_pred CcceEEEEecCCcEEEEEecCCceEeeeccccce---ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCC----CCc
Q 001202 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE----SAS 290 (1124)
Q Consensus 219 ~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~---~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~----~~~ 290 (1124)
...+..+-|.++++++|...|.+.++|...... ...|.+++ .++.+||++.+++|+.|.+|++|+..- ++.
T Consensus 414 -y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 414 -YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred -cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence 556777889999999999999999999876543 26899999 999999999999999999999999642 122
Q ss_pred eeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEE
Q 001202 291 LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM 370 (1124)
Q Consensus 291 ~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~ 370 (1124)
..+.+++.+. ..-+-+..|.|+++||||++||++--|.+++||-+.+-+..-+|-|| .=+|.++..+||+ ..++
T Consensus 493 ~~k~lsl~~~-rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGH-kLPV~smDIS~DS----kliv 566 (888)
T KOG0306|consen 493 QKKVLSLKHT-RTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGH-KLPVLSMDISPDS----KLIV 566 (888)
T ss_pred cceeeeeccc-eEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccc-ccceeEEeccCCc----CeEE
Confidence 2222322210 00013466999999999999999999999999999999999999999 6789999999999 8999
Q ss_pred Eee---eEEEEeCCCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeeccc
Q 001202 371 SGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL 444 (1124)
Q Consensus 371 sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~ 444 (1124)
+|+ ++++|+.+=|.+-...-+|++.|..+.| .....|++.|+.++.||-..-+.
T Consensus 567 TgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~-------------------- 626 (888)
T KOG0306|consen 567 TGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEE-------------------- 626 (888)
T ss_pred eccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhh--------------------
Confidence 988 9999999999998888899999865555 55678999999999998433322
Q ss_pred ceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC
Q 001202 445 PVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 445 p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s 482 (1124)
.+++.+|...|++++.+|+|.+++++|.|..+ +|....
T Consensus 627 iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 627 IQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred heeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 56788999999999999999999999999999 998543
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.1e-23 Score=221.17 Aligned_cols=264 Identities=14% Similarity=0.108 Sum_probs=214.8
Q ss_pred CCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeE
Q 001202 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVV 280 (1124)
Q Consensus 205 ~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV 280 (1124)
.++..+|+.+-|+ |+-.+.++++.|.+++.||..+++.. .||++++ .++|+..|+++|++++|-.+
T Consensus 105 ~g~r~~vt~v~~h----------p~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 105 AGHRSSVTRVIFH----------PSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred hccccceeeeeec----------cCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence 3456666655554 66777888889999999999988753 7999999 99999999999999999999
Q ss_pred EEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcC
Q 001202 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (1124)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp 360 (1124)
++||.++..++++.+. | |.-.|.+++|-|-|.+++|++.|.+|+.|++.++-++.++.+| ...|..++.+.
T Consensus 175 ~LWd~~~~~~c~ks~~----g----h~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h-~ewvr~v~v~~ 245 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLI----G----HEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH-SEWVRMVRVNQ 245 (406)
T ss_pred hheeHHHHHHHHHHhc----C----cccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc-hHhEEEEEecC
Confidence 9999987446666665 5 8888999999999999999999999999999999999999999 67999999999
Q ss_pred CCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceE--EEEec-----------c-----ceEEeeccCCceeeeEe
Q 001202 361 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-----------G-----KCCLNRGVSGMTYARQV 419 (1124)
Q Consensus 361 ~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~s~-----------~-----k~~~s~s~d~~v~~w~l 419 (1124)
|+ ..+++++ ++.+|-.++.++.....+|.-.| .++.+ + ..+.+++.|+++++|++
T Consensus 246 DG----ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv 321 (406)
T KOG0295|consen 246 DG----TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV 321 (406)
T ss_pred Ce----eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec
Confidence 98 8888887 89999999987777766665544 22211 2 36788999999999998
Q ss_pred eecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeE
Q 001202 420 IYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ 498 (1124)
Q Consensus 420 ~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~ 498 (1124)
..+.. ..++.+|...|+.++|+|.|+||+++.+|+++ +||+++++.-.- -+.+|. .
T Consensus 322 ~tg~c--------------------L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~-~~ah~h--f 378 (406)
T KOG0295|consen 322 STGMC--------------------LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT-LEAHEH--F 378 (406)
T ss_pred cCCeE--------------------EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec-cCCCcc--e
Confidence 88755 67888999999999999999999999999999 999999875322 224443 3
Q ss_pred EEEEEecC--CEEEEEEE
Q 001202 499 SKGLLWLG--KIIVVCNY 514 (1124)
Q Consensus 499 v~gl~W~~--~~liv~~~ 514 (1124)
|..+...+ .++++|..
T Consensus 379 vt~lDfh~~~p~VvTGsV 396 (406)
T KOG0295|consen 379 VTSLDFHKTAPYVVTGSV 396 (406)
T ss_pred eEEEecCCCCceEEeccc
Confidence 44455543 46666533
No 31
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.91 E-value=1.6e-23 Score=225.95 Aligned_cols=268 Identities=13% Similarity=0.179 Sum_probs=216.8
Q ss_pred EEEEecCCcEEEEEecCCceEeeecccc--c-eecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeec
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKI--D-KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~--~-~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~ 298 (1124)
.+..+|+||.+++++..+...+|++... + ..+.|.++| ++.|++++.++++|..+|.||+|+.+. ..++.+.
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk~~~-- 176 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVKIIQ-- 176 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhHHhh--
Confidence 4556699999999999999999998543 2 237899999 999999999999999999999999765 2222222
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eE
Q 001202 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM 375 (1124)
Q Consensus 299 ~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i 375 (1124)
. .|+..|++++|||....++++++||+|+|||....+.-..|+|| .-.|.++.|+|.. ..+++|+ .+
T Consensus 177 --a---hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH-gwdVksvdWHP~k----gLiasgskDnlV 246 (464)
T KOG0284|consen 177 --A---HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH-GWDVKSVDWHPTK----GLIASGSKDNLV 246 (464)
T ss_pred --H---hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccC-CCCcceeccCCcc----ceeEEccCCcee
Confidence 1 26689999999999999999999999999999988888889999 4679999999987 7888888 89
Q ss_pred EEEeCCCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCC
Q 001202 376 MQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (1124)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~ 452 (1124)
++||+.+++++.++.+|...|..+.| +..++|+|.|..++++|+..-.+ ..+|.+|.
T Consensus 247 KlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE--------------------l~~~r~Hk 306 (464)
T KOG0284|consen 247 KLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE--------------------LFTYRGHK 306 (464)
T ss_pred EeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH--------------------HHHhhcch
Confidence 99999999999999999999977666 77899999999999999875444 56788999
Q ss_pred CceEEEEEccC-CCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeCC
Q 001202 453 WPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 453 ~~I~~va~Spd-G~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~~ 529 (1124)
..|++++|+|- ...+++||.||.+ +|.+...+ -.+......+-.|.+|.|++=.-|.|.. +++..+|+|.+.
T Consensus 307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil~tg---snd~t~rfw~r~ 380 (464)
T KOG0284|consen 307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHILATG---SNDRTVRFWTRN 380 (464)
T ss_pred hhheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccceeEeec---CCCcceeeeccC
Confidence 99999999995 5678899999999 99886221 1222223333457799997533333322 556689999985
No 32
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=2.5e-22 Score=239.80 Aligned_cols=267 Identities=18% Similarity=0.269 Sum_probs=219.0
Q ss_pred EEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEe
Q 001202 137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (1124)
Q Consensus 137 ~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~ 216 (1124)
.+++++..++.++.++.+.++.+..... ... ....+|...|.++.|
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~---------------------------------~~l~~h~~~v~~~~f 211 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKS-NLL---------------------------------RELSGHTRGVSDVAF 211 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccc-hhh---------------------------------ccccccccceeeeEE
Confidence 4677888888888999998865532211 010 012456667766555
Q ss_pred cCCcceEEEEecCCcEEEEEecCCceEeeecccc-ce---ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCce
Q 001202 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-DK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASL 291 (1124)
Q Consensus 217 s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~-~~---~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~ 291 (1124)
+ |||+++++++.|+++++||.... .. +.||...| |++|+|+++++++|+.|++|+|||+.+ +++
T Consensus 212 s----------~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~ 280 (456)
T KOG0266|consen 212 S----------PDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GEC 280 (456)
T ss_pred C----------CCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeE
Confidence 5 89999999999999999999433 22 37999999 999999999999999999999999998 899
Q ss_pred eEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCe--eeEEeccCCcC-ceeeeEEcCCCCCCcce
Q 001202 292 IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISLS-SISSPIVKPNQDCKYEP 368 (1124)
Q Consensus 292 ~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~--l~~tl~~h~~~-~V~s~~~sp~~~~~~~~ 368 (1124)
.+++. + |.++|++++|++||+.|++++.|+.|+|||+.++. +..++.++... .++++.|+|++ .+
T Consensus 281 ~~~l~----~----hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~----~~ 348 (456)
T KOG0266|consen 281 VRKLK----G----HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG----KY 348 (456)
T ss_pred EEeee----c----cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC----cE
Confidence 99888 5 99999999999999999999999999999999998 66788776444 69999999999 88
Q ss_pred EEEee---eEEEEeCCCCeEEEEecCCcceE---EEE--ec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCcccee
Q 001202 369 LMSGT---SMMQWDEYGYRLYAIEEGSSERV---LIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (1124)
Q Consensus 369 l~sg~---~i~~W~~~~~~l~~~~~~~~~~v---~~~--s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w 439 (1124)
++++. .++.|+...++......+|...+ ... .. ++.+++++.|+.+.+|+...+..
T Consensus 349 ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~--------------- 413 (456)
T KOG0266|consen 349 LLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI--------------- 413 (456)
T ss_pred EEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccch---------------
Confidence 88766 89999999999888888877653 222 22 88999999999999999876444
Q ss_pred eecccceeeccC-CCceEEEEEccCCCEEEEEc--CCCeE-EEEc
Q 001202 440 LHLNLPVSYISQ-NWPVQHVAASKDGMFLAVAG--LHGLI-LYDI 480 (1124)
Q Consensus 440 ~~~~~p~~~~~~-~~~I~~va~SpdG~~lAvag--~dG~v-lwd~ 480 (1124)
...+.+| ..++..++++|..+++++++ .|+.+ +|..
T Consensus 414 -----~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 414 -----LQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred -----hhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 4566778 88899999999999999999 78888 8864
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.91 E-value=9e-24 Score=222.72 Aligned_cols=255 Identities=11% Similarity=0.167 Sum_probs=209.4
Q ss_pred cCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCC
Q 001202 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (1124)
Q Consensus 228 ~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~ 303 (1124)
-|...+++|..|.|+++||..+..+. .||++.| |+.+.. +.|++|+.|.||+|||+++ ++++.++- +
T Consensus 205 YDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~t-ge~l~tli----h-- 275 (499)
T KOG0281|consen 205 YDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNT-GEPLNTLI----H-- 275 (499)
T ss_pred ecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccC-CchhhHHh----h--
Confidence 34556788999999999998776543 7999999 998754 4999999999999999998 88888776 5
Q ss_pred CCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCe---eeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEE
Q 001202 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQ 377 (1124)
Q Consensus 304 ~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~---l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~ 377 (1124)
|...|..+.|+ ..++++++.|++++|||+.... +...+.|| ...|+.+.|+. ++++|++ +++.
T Consensus 276 --HceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH-rAaVNvVdfd~------kyIVsASgDRTikv 344 (499)
T KOG0281|consen 276 --HCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDFDD------KYIVSASGDRTIKV 344 (499)
T ss_pred --hcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhh-hhheeeecccc------ceEEEecCCceEEE
Confidence 99999999997 4689999999999999997653 45677888 78899988742 5777766 9999
Q ss_pred EeCCCCeEEEEecCCcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceE
Q 001202 378 WDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (1124)
Q Consensus 378 W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~ 456 (1124)
|+..+++++.+..+|...|.++.+ ++.+++|+.|.++++|++..|.. ...+.||..-|+
T Consensus 345 W~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~c--------------------LRvLeGHEeLvR 404 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC--------------------LRVLEGHEELVR 404 (499)
T ss_pred EeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHH--------------------HHHHhchHHhhh
Confidence 999999999999999999999999 99999999999999999887765 566779999999
Q ss_pred EEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEe------cCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeCC
Q 001202 457 HVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF------GDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 457 ~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f------~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~~ 529 (1124)
++.| |.+.+++|+.||.+ +||++++.=..- -....|+...|.++.+..-.+|++ +.+++|.+|++.
T Consensus 405 ciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvss-----sHddtILiWdFl 477 (499)
T KOG0281|consen 405 CIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISS-----SHDDTILIWDFL 477 (499)
T ss_pred heee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEec-----cCCCeEEEEEcC
Confidence 9999 56789999999999 999987642100 011123444577788777777776 344589999996
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.91 E-value=1.2e-21 Score=199.47 Aligned_cols=282 Identities=13% Similarity=0.228 Sum_probs=206.6
Q ss_pred eEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhh-hcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCC
Q 001202 32 GLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQR-EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQ 109 (1124)
Q Consensus 32 ~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~-~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~ 109 (1124)
-+||+++ |-+|++|.+. .+. +.|+ +++ .+.+..++..||+++||+++.. .||+||+.++...
T Consensus 11 viLvsA~YDhTIRfWqa~-tG~----C~rT---iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~------- 74 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQAL-TGI----CSRT---IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN------- 74 (311)
T ss_pred eEEEeccCcceeeeeehh-cCe----EEEE---EecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC-------
Confidence 4778876 5689999996 544 3333 222 4667899999999999998765 7999999875320
Q ss_pred CCCcceeeEEEEeeeeeeccccc--ceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCC
Q 001202 110 PSGLFFIKISLVLNEQLPFAEKG--LSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPS 187 (1124)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~--~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~ 187 (1124)
++ ..+.++. ..+..|..++.-|+.|+.||++++ ||-......
T Consensus 75 ----Pv----------~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kI--WdlR~~~~q-------------------- 118 (311)
T KOG0315|consen 75 ----PV----------ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKI--WDLRSLSCQ-------------------- 118 (311)
T ss_pred ----ce----------eEEeccCCceEEEEEeecCeEEEecCCCceEEE--EeccCcccc--------------------
Confidence 11 1122232 234456678999999999999998 553222111
Q ss_pred CCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee----cCCCCeE-EE
Q 001202 188 NGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CA 262 (1124)
Q Consensus 188 ~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~----~gh~~~v-~v 262 (1124)
-.+.+.++|+++ +.+|+..-++++-.++.|++||.....+. ..-...+ ++
T Consensus 119 ---------------R~~~~~spVn~v----------vlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl 173 (311)
T KOG0315|consen 119 ---------------RNYQHNSPVNTV----------VLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSL 173 (311)
T ss_pred ---------------hhccCCCCcceE----------EecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeE
Confidence 123445667654 44477777888888899999998765332 3334566 99
Q ss_pred EEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC-ee
Q 001202 263 SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RL 341 (1124)
Q Consensus 263 a~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~-~l 341 (1124)
++.|||+.++.+..-|...+|++-..........+.++ .+|.+-+..+.+|||+++||+++.|++++||++.+- ++
T Consensus 174 ~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~---~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kl 250 (311)
T KOG0315|consen 174 TVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF---QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKL 250 (311)
T ss_pred EEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe---ecccceEEEEEECCCCcEEEeecCCceEEEEecCCceee
Confidence 99999999999999999999998652211111111111 259999999999999999999999999999999987 56
Q ss_pred eEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEE
Q 001202 342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI 398 (1124)
Q Consensus 342 ~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~ 398 (1124)
-.++.+| ...+..++||.++ +++++|+ ..++|++..++.+....+|....++
T Consensus 251 e~~l~gh-~rWvWdc~FS~dg----~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc 305 (311)
T KOG0315|consen 251 ELVLTGH-QRWVWDCAFSADG----EYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVC 305 (311)
T ss_pred EEEeecC-CceEEeeeeccCc----cEEEecCCCCceeecccccCceeeecCCcccccEE
Confidence 6677887 7899999999999 9999987 8999999999988888887655443
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.7e-22 Score=215.48 Aligned_cols=238 Identities=14% Similarity=0.163 Sum_probs=206.8
Q ss_pred ccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccc-ce---ecCCCCeE-EEEEccCCCEEEEEecC
Q 001202 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-DK---ELGSGDAV-CASIAPEQQILAVGTRR 277 (1124)
Q Consensus 203 ~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~-~~---~~gh~~~v-~va~spdg~lLAsGs~D 277 (1124)
++.+|...+.++.|+ ..|+++++++.|-.+++||..+. ++ ..||...| ++.|-|.|.+|++++.|
T Consensus 145 ~LrGHt~sv~di~~~----------a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD 214 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFD----------ASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRD 214 (406)
T ss_pred hhhccccceeEEEEe----------cCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccc
Confidence 355676678777666 77899999999999999998763 22 26999999 99999999999999999
Q ss_pred CeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeE
Q 001202 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 357 (1124)
Q Consensus 278 gtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~ 357 (1124)
.+|+.|++++ +-++.++. | |...|..++-+.||..+|+++.|.++++|-+.++++...+++| ...|..++
T Consensus 215 ~tik~We~~t-g~cv~t~~----~----h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~h-Eh~vEci~ 284 (406)
T KOG0295|consen 215 NTIKAWECDT-GYCVKTFP----G----HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREH-EHPVECIA 284 (406)
T ss_pred cceeEEeccc-ceeEEecc----C----chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcc-ccceEEEE
Confidence 9999999999 88899988 6 9999999999999999999999999999999999998999998 77899998
Q ss_pred EcCCCC-----------CCcceEEEee---eEEEEeCCCCeEEEEecCCcceE--EEEec-cceEEeeccCCceeeeEee
Q 001202 358 VKPNQD-----------CKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVI 420 (1124)
Q Consensus 358 ~sp~~~-----------~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~ 420 (1124)
|-|... ...+.+.+|+ ++++|++.++.+++++.||++.| ++|++ ||+++|...|+++++|++.
T Consensus 285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred ecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 876532 1124677777 99999999999999999999999 67777 9999999999999999987
Q ss_pred ecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEc
Q 001202 421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 421 ~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~ 480 (1124)
.... -.+...|..-|.++.|..+-.|+++|+-|.++ +|..
T Consensus 365 ~~~c--------------------mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 365 NLQC--------------------MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ccee--------------------eeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 7655 34455778889999999999999999999999 9864
No 36
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=4.4e-22 Score=237.74 Aligned_cols=269 Identities=16% Similarity=0.238 Sum_probs=213.8
Q ss_pred eEEEEecCCcEEEEEecCCceEeeeccccc--e---ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEE
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKID--K---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~--~---~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l 295 (1124)
..+.+++||+.++++..++.+++|+....+ . ..+|...| +++|+|+++++++|+.|+++++||+...+..++++
T Consensus 163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l 242 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL 242 (456)
T ss_pred EEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe
Confidence 346677999999999999999999884443 1 26899999 99999999999999999999999995546888888
Q ss_pred eeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee--
Q 001202 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (1124)
Q Consensus 296 ~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~-- 373 (1124)
+ | |+..|++++|+|+|+.+++|+.|++|+|||+.++.+..++.+| .+.|++++|++++ ..+++++
T Consensus 243 ~----g----H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h-s~~is~~~f~~d~----~~l~s~s~d 309 (456)
T KOG0266|consen 243 K----G----HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH-SDGISGLAFSPDG----NLLVSASYD 309 (456)
T ss_pred c----C----CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc-CCceEEEEECCCC----CEEEEcCCC
Confidence 8 6 9999999999999999999999999999999999999999999 7799999999999 8888877
Q ss_pred -eEEEEeCCCCe--EEEEecCCcce--E--EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccc
Q 001202 374 -SMMQWDEYGYR--LYAIEEGSSER--V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (1124)
Q Consensus 374 -~i~~W~~~~~~--l~~~~~~~~~~--v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p 445 (1124)
.+++||..+++ +.....++... + .+|++ ++.+++++.|+++++|++..+.. +
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~--------------------~ 369 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS--------------------V 369 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc--------------------e
Confidence 89999999999 44555444433 4 56666 99999999999999999877655 5
Q ss_pred eeeccCCC---ceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecC--CEEEEEEEecCCC
Q 001202 446 VSYISQNW---PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSN 519 (1124)
Q Consensus 446 ~~~~~~~~---~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~--~~liv~~~~~~~~ 519 (1124)
..+.+|+. .+.+...+++|+++.+|+.|+.+ +||+.++.-.. ....+. .-.+..+.|.. ++++.+.. ..
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~-~l~~h~-~~~~~~~~~~~~~~~~~s~s~---~~ 444 (456)
T KOG0266|consen 370 GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQ-RLEGHS-KAAVSDLSSHPTENLIASSSF---EG 444 (456)
T ss_pred eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhh-hhcCCC-CCceeccccCCCcCeeeecCc---CC
Confidence 56666655 45555668999999999999999 99999854221 111111 23355677764 34444322 34
Q ss_pred eEEEEEeeC
Q 001202 520 TYELLFYPR 528 (1124)
Q Consensus 520 ~~elrly~~ 528 (1124)
+..+++|..
T Consensus 445 d~~~~~w~~ 453 (456)
T KOG0266|consen 445 DGLIRLWKY 453 (456)
T ss_pred CceEEEecC
Confidence 457888855
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.90 E-value=4.3e-22 Score=211.32 Aligned_cols=274 Identities=14% Similarity=0.193 Sum_probs=219.8
Q ss_pred CCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeE
Q 001202 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVV 280 (1124)
Q Consensus 205 ~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV 280 (1124)
.+|.+-|+++++. |-.+.+++++.|.++++||..+++.. .||-..| .+++|+...++.+++.|+.|
T Consensus 148 ~gHlgWVr~vavd----------P~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 148 SGHLGWVRSVAVD----------PGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred hhccceEEEEeeC----------CCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 4566677665555 66788889999999999999998754 6899999 99999999999999999999
Q ss_pred EEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcC
Q 001202 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (1124)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp 360 (1124)
+.||+.. .+.++... | |-..|.|++..|.-..|++|+.|.+++|||+.+...+.++.|| .+.|.++.+.|
T Consensus 218 KCwDLe~-nkvIR~Yh----G----HlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~~V~~V~~~~ 287 (460)
T KOG0285|consen 218 KCWDLEY-NKVIRHYH----G----HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TNPVASVMCQP 287 (460)
T ss_pred EEEechh-hhhHHHhc----c----ccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC-CCcceeEEeec
Confidence 9999988 77777766 6 9999999999999999999999999999999999999999999 89999999998
Q ss_pred CCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEE--EEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCC
Q 001202 361 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (1124)
Q Consensus 361 ~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~--~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~ 434 (1124)
.+ ..+++|+ ++++||...++-..+...|...+. ++.+ ...+++++.| .++.|.+-.|.-
T Consensus 288 ~d----pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f---------- 352 (460)
T KOG0285|consen 288 TD----PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEF---------- 352 (460)
T ss_pred CC----CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccch----------
Confidence 87 7788888 999999999999998888887774 4555 3456777777 677888766554
Q ss_pred ccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEec-CcCceeee----EEEEEEe--cC
Q 001202 435 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFG-DITQEQKI----QSKGLLW--LG 506 (1124)
Q Consensus 435 ~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~-~~~~e~~~----~v~gl~W--~~ 506 (1124)
...+.+|+..|.+++...|| ++++||++|.+ .||..+|--..+. ...|..++ -+...++ .+
T Consensus 353 ----------~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg 421 (460)
T KOG0285|consen 353 ----------LQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG 421 (460)
T ss_pred ----------hhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC
Confidence 34577899999999999887 66789999999 9999988543332 12221111 1333344 34
Q ss_pred CEEEEEEEecCCCeEEEEEeeCC
Q 001202 507 KIIVVCNYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 507 ~~liv~~~~~~~~~~elrly~~~ 529 (1124)
.-||.| ..+..|.+|..+
T Consensus 422 ~rlit~-----eadKtIk~~keD 439 (460)
T KOG0285|consen 422 SRLITG-----EADKTIKMYKED 439 (460)
T ss_pred ceEEec-----cCCcceEEEecc
Confidence 566766 334578899764
No 38
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.90 E-value=6.4e-22 Score=201.35 Aligned_cols=227 Identities=17% Similarity=0.203 Sum_probs=182.6
Q ss_pred EEEecCCcEEEEEecCCceEeeeccccce-----ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEee
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~~-----~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~ 297 (1124)
+.++||++.+++++.. .++++|..+... ..+|++-| .|.|.-+|+++.+|++||++||||+.. ..+-+.++
T Consensus 46 LeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-~~~qR~~~- 122 (311)
T KOG0315|consen 46 LEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-LSCQRNYQ- 122 (311)
T ss_pred EEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC-cccchhcc-
Confidence 3445888888876654 488888876543 26898888 999999999999999999999999987 55555555
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---e
Q 001202 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~ 374 (1124)
|..+|+++...|+...|++|..+|.|+|||+....+.+.+--.-...|.++...|++ ..++.+. .
T Consensus 123 --------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg----sml~a~nnkG~ 190 (311)
T KOG0315|consen 123 --------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG----SMLAAANNKGN 190 (311)
T ss_pred --------CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC----cEEEEecCCcc
Confidence 889999999999999999999999999999998877776654335679999999998 6665443 7
Q ss_pred EEEEeCCCCeE------EEEecCCcceEE--EEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccc
Q 001202 375 MMQWDEYGYRL------YAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (1124)
Q Consensus 375 i~~W~~~~~~l------~~~~~~~~~~v~--~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p 445 (1124)
..+|+.-+.+- +...+.|...++ .+++ +|.++++|.|.++++|....- - +.-
T Consensus 191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~------------------kle 251 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-F------------------KLE 251 (311)
T ss_pred EEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-e------------------eeE
Confidence 88998765332 223456777773 4666 899999999999999986432 1 123
Q ss_pred eeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 446 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 446 ~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
..+.+|+..++.++||.||+||++|+.|+++ +|++..++
T Consensus 252 ~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 252 LVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred EEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 4567899999999999999999999999999 99998876
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.90 E-value=4.9e-21 Score=245.17 Aligned_cols=228 Identities=12% Similarity=0.146 Sum_probs=176.4
Q ss_pred CCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEcc-CCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCC
Q 001202 229 NGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (1124)
Q Consensus 229 dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~sp-dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~ 303 (1124)
++.++++++.|+++++||..+++.. .+|.+.| +++|+| ++.+|++|+.||+|++||+.+ +..+.++.
T Consensus 544 ~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~~------- 615 (793)
T PLN00181 544 IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGTIK------- 615 (793)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEEEe-------
Confidence 4678888899999999998876543 6899999 999997 789999999999999999987 66666665
Q ss_pred CCCCCCeEEEEEC-CCCCEEEEEECCCcEEEEEcCCCe-eeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEE
Q 001202 304 MDDTGPVSCIAWT-PDNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQW 378 (1124)
Q Consensus 304 ~~h~g~V~~lawS-PDG~~Lasgs~Dg~I~vWdv~~~~-l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W 378 (1124)
+...|.+++|+ ++|..||+|+.||.|++||+.... ...++.+| ...|+++.|. ++ ..+++++ ++++|
T Consensus 616 --~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h-~~~V~~v~f~-~~----~~lvs~s~D~~ikiW 687 (793)
T PLN00181 616 --TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH-SKTVSYVRFV-DS----STLVSSSTDNTLKLW 687 (793)
T ss_pred --cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC-CCCEEEEEEe-CC----CEEEEEECCCEEEEE
Confidence 34679999995 679999999999999999997654 56777777 6789999996 44 5677765 89999
Q ss_pred eCCC------CeEEEEecCCcceE--EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccc-eee
Q 001202 379 DEYG------YRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSY 448 (1124)
Q Consensus 379 ~~~~------~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p-~~~ 448 (1124)
+... ...+....+|...+ +.+++ ++.+++|+.|+++++|+...... +..+..... ..++ ...
T Consensus 688 d~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~-~~s~~~~~~-------~~~~~~~~ 759 (793)
T PLN00181 688 DLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP-VLSYKFKTI-------DPVSGLEV 759 (793)
T ss_pred eCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCc-eEEEecccC-------Cccccccc
Confidence 9863 35666777887766 55565 78999999999999999654322 111100000 0001 112
Q ss_pred ccCCCceEEEEEccCCCEEEEEcCCCeE-EEEc
Q 001202 449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 449 ~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~ 480 (1124)
..+...|++++|+|+|.+|++|+.||.+ +|++
T Consensus 760 ~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 760 DDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 3456789999999999999999999999 9986
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.89 E-value=7.1e-22 Score=209.71 Aligned_cols=274 Identities=11% Similarity=0.173 Sum_probs=217.4
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEE
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~ 332 (1124)
.||.+.| |+++.|-..++|+|+.|++++|||+.+ +.+..++. | |...|..+++|+---+++++++|+.|+
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~Lkltlt----G----hi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLT----G----HIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeec----c----hhheeeeeeecccCceEEEecCCCeeE
Confidence 6999999 999999999999999999999999998 88888887 6 999999999999999999999999999
Q ss_pred EEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEE--Eec-cceEE
Q 001202 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCL 406 (1124)
Q Consensus 333 vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~--~s~-~k~~~ 406 (1124)
.||+...+.+....|| .+.|.+++.+|.. +.+++|+ ++++||..+..-+.+..||...|.. +.+ ..+++
T Consensus 219 CwDLe~nkvIR~YhGH-lS~V~~L~lhPTl----dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi 293 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGH-LSGVYCLDLHPTL----DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI 293 (460)
T ss_pred EEechhhhhHHHhccc-cceeEEEeccccc----eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence 9999999999999998 8999999999988 7888877 9999999999999999999998843 333 67899
Q ss_pred eeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeEEEEcCCCcEE
Q 001202 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR 486 (1124)
Q Consensus 407 s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~vlwd~~sg~wk 486 (1124)
|+|.|+++++||+..|.. ..++..|+-.|++++.+|....+|+||.|..-.|++-.|..
T Consensus 294 t~S~D~tvrlWDl~agkt--------------------~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f- 352 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKT--------------------MITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEF- 352 (460)
T ss_pred EecCCceEEEeeeccCce--------------------eEeeecccceeeEEecCCchhhhhccCCccceeccCCccch-
Confidence 999999999999998877 45667899999999999999999999999877999877652
Q ss_pred EecCcCceeeeEEEEEEecCC-EEEEEEEecCCCeEEEEEeeCCCCCCcceEEEeecCC-----ccEEEEeeC---CEEE
Q 001202 487 VFGDITQEQKIQSKGLLWLGK-IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLA-----KPIVMDVYE---DYIL 557 (1124)
Q Consensus 487 ~f~~~~~e~~~~v~gl~W~~~-~liv~~~~~~~~~~elrly~~~~ld~~~~l~~~~l~s-----~~l~l~~~~---~~ll 557 (1124)
..|. .++.-.+..+.-+.| ++++| . ....+-+|+...-.+.+.+.+..-|. .-+..++++ ..|+
T Consensus 353 -~~nl-sgh~~iintl~~nsD~v~~~G-~----dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 353 -LQNL-SGHNAIINTLSVNSDGVLVSG-G----DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred -hhcc-ccccceeeeeeeccCceEEEc-C----CceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence 2342 222223445666554 55554 2 22367788775222222222222222 123344444 3477
Q ss_pred EEEcCCeEEEEE
Q 001202 558 VTYRPFDVHIFH 569 (1124)
Q Consensus 558 v~~~d~~i~l~~ 569 (1124)
..-+|.+|.+|.
T Consensus 426 t~eadKtIk~~k 437 (460)
T KOG0285|consen 426 TGEADKTIKMYK 437 (460)
T ss_pred eccCCcceEEEe
Confidence 777888999885
No 41
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=1.9e-20 Score=212.77 Aligned_cols=322 Identities=15% Similarity=0.124 Sum_probs=208.4
Q ss_pred EEEEecCCcEEEEEecCCceEeeecccccee------cCCCCeE-EEEEcc------------CCCEEEEEecCCeEEEE
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAV-CASIAP------------EQQILAVGTRRGVVELY 283 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~------~gh~~~v-~va~sp------------dg~lLAsGs~DgtV~vw 283 (1124)
.+.|.+....+.+-.+|..+-+||.....+. .-|...| .|..-| .+ -+.+++.|||||+|
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLW 407 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEe
Confidence 3344455556666677777778887654432 3355444 443222 23 37899999999999
Q ss_pred EcCCCCceeEEEe-------eccCCC----------------------CCCCCCCeEEEEECCCCCEEEEEECCCcEEEE
Q 001202 284 DLAESASLIRTVS-------LYDWGY----------------------SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (1124)
Q Consensus 284 d~~~~~~~~~~l~-------~~~~g~----------------------~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vW 334 (1124)
+++. +..-.++. +....+ ..+..-.+.+++.||||++||+|..-|+++|+
T Consensus 408 ~l~~-ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 408 DLAF-CTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eccc-ccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 9875 21111100 000000 01234568999999999999999999999999
Q ss_pred EcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCC-CCeEEEEecCCcceEEEEec---c--ceE
Q 001202 335 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY-GYRLYAIEEGSSERVLIFSF---G--KCC 405 (1124)
Q Consensus 335 dv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~-~~~l~~~~~~~~~~v~~~s~---~--k~~ 405 (1124)
++..-+.++.++.| .+.|.++.++... .....++|++ -+.++|.. .|.+..+..+|...|..+.| + ..+
T Consensus 487 ~Lq~l~~~~~~eAH-esEilcLeyS~p~-~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~M 564 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAH-ESEILCLEYSFPV-LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKM 564 (1080)
T ss_pred Eehhhhhhhheecc-cceeEEEeecCch-hhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEE
Confidence 99999999999988 8899999997643 2336778877 56678875 56777788899999988777 2 567
Q ss_pred EeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccce-eeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCC
Q 001202 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 406 ~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~-~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg 483 (1124)
++.+.|..+.........+..+ .|. +-......+..+++.|.-+++++++.|..| +|++.+|
T Consensus 565 iscGADksimFr~~qk~~~g~~----------------f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg 628 (1080)
T KOG1408|consen 565 ISCGADKSIMFRVNQKASSGRL----------------FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG 628 (1080)
T ss_pred EeccCchhhheehhccccCcee----------------ccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc
Confidence 7888887765433222222111 111 111223458889999999999999999999 9999998
Q ss_pred cE-EEec-CcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeCC--CCCCcceEEEeecCCccEEEEeeCCEEEEE
Q 001202 484 KW-RVFG-DITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVT 559 (1124)
Q Consensus 484 ~w-k~f~-~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~~--~ld~~~~l~~~~l~s~~l~l~~~~~~llv~ 559 (1124)
|- |.|. ...+|.+..-..+.-.+.|+.+.|.+ ..|-+|++. ..-.....|.+-+.+ +-+...-.+|+-+
T Consensus 629 Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd-----ktl~~~Df~sgEcvA~m~GHsE~VTG--~kF~nDCkHlISv 701 (1080)
T KOG1408|consen 629 KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD-----KTLCFVDFVSGECVAQMTGHSEAVTG--VKFLNDCKHLISV 701 (1080)
T ss_pred ceeeeecccccCCCceEEEEECCCccEEEEeecC-----CceEEEEeccchhhhhhcCcchheee--eeecccchhheee
Confidence 85 4664 33444443333455566677666552 267777773 222222233222222 2223333578888
Q ss_pred EcCCeEEEEEEE
Q 001202 560 YRPFDVHIFHVK 571 (1124)
Q Consensus 560 ~~d~~i~l~~~~ 571 (1124)
..|+.|-+|++.
T Consensus 702 sgDgCIFvW~lp 713 (1080)
T KOG1408|consen 702 SGDGCIFVWKLP 713 (1080)
T ss_pred cCCceEEEEECc
Confidence 999999999875
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.89 E-value=2.1e-21 Score=202.79 Aligned_cols=226 Identities=14% Similarity=0.154 Sum_probs=185.9
Q ss_pred CCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCC-CEEEEEecCCeE
Q 001202 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQ-QILAVGTRRGVV 280 (1124)
Q Consensus 206 ~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg-~lLAsGs~DgtV 280 (1124)
+|.++|..+.|. +||+.+++++.|+++..||..++++. .+|.+.| .+..+..| .++.+|+.||++
T Consensus 88 gHsgAVM~l~~~----------~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~ 157 (338)
T KOG0265|consen 88 GHSGAVMELHGM----------RDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTL 157 (338)
T ss_pred cccceeEeeeec----------cCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceE
Confidence 455667666665 88999999999999999999999865 6888888 77655555 468899999999
Q ss_pred EEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcC
Q 001202 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (1124)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp 360 (1124)
||||+.+ ...++++. .+-.++++.|..++..+.+|+-|+.|++||+..+....++.|| .+.|+++..+|
T Consensus 158 kl~D~R~-k~~~~t~~---------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh-~DtIt~lsls~ 226 (338)
T KOG0265|consen 158 KLWDIRK-KEAIKTFE---------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH-ADTITGLSLSR 226 (338)
T ss_pred EEEeecc-cchhhccc---------cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecc-cCceeeEEecc
Confidence 9999987 66666654 5667999999999999999999999999999999999999999 88999999999
Q ss_pred CCCCCcceEEEee---eEEEEeCC----CCeEEEEecCCcceE------EEEec-cceEEeeccCCceeeeEeeecCCeE
Q 001202 361 NQDCKYEPLMSGT---SMMQWDEY----GYRLYAIEEGSSERV------LIFSF-GKCCLNRGVSGMTYARQVIYGEDRL 426 (1124)
Q Consensus 361 ~~~~~~~~l~sg~---~i~~W~~~----~~~l~~~~~~~~~~v------~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l 426 (1124)
++ .++.|-+ ++++|+.. +++++.+..+|.... ..+++ ++.+.+|+.|..+++|+...-.-
T Consensus 227 ~g----s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~-- 300 (338)
T KOG0265|consen 227 YG----SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI-- 300 (338)
T ss_pred CC----CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccE--
Confidence 99 6777655 89999986 456677777754332 45566 67778899999999999654222
Q ss_pred EEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE
Q 001202 427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (1124)
Q Consensus 427 ~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v 476 (1124)
...+-||.+.|.+++|+|....+.+++.|.++
T Consensus 301 ------------------lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 301 ------------------LYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred ------------------EEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence 34556899999999999999999999999988
No 43
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.89 E-value=1.9e-22 Score=204.99 Aligned_cols=236 Identities=18% Similarity=0.231 Sum_probs=195.3
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee--cCCCCeE-EEEEccCCCEEEEEecCCeE
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRRGVV 280 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~--~gh~~~v-~va~spdg~lLAsGs~DgtV 280 (1124)
+.+|+++|.. +.+..|-...++++.|++.++||..++..+ ..|...| .++|+.|...|.+|+.+..+
T Consensus 55 feghkgavw~----------~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekll 124 (334)
T KOG0278|consen 55 FEGHKGAVWS----------ATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLL 124 (334)
T ss_pred eeccCcceee----------eecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHh
Confidence 4567777743 444466677888889999999999998765 5789999 99999999999999999999
Q ss_pred EEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcC
Q 001202 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (1124)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp 360 (1124)
||||++........+. | |++.|..+-|....+++.|+.+|++||+||..++..+++|.- .+.|+++.+++
T Consensus 125 rvfdln~p~App~E~~----g----htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~--~s~VtSlEvs~ 194 (334)
T KOG0278|consen 125 RVFDLNRPKAPPKEIS----G----HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF--NSPVTSLEVSQ 194 (334)
T ss_pred hhhhccCCCCCchhhc----C----CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec--CCCCcceeecc
Confidence 9999987444444454 5 999999999999999999999999999999999999999976 46899999999
Q ss_pred CCCCCcceEEE--eeeEEEEeCCCCeEEEEecCCcceE--EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCc
Q 001202 361 NQDCKYEPLMS--GTSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (1124)
Q Consensus 361 ~~~~~~~~l~s--g~~i~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~ 435 (1124)
++ +++.. |+++++|++.+..++....- ...| ..+.| ....+.|+.|..++.+|..++++
T Consensus 195 dG----~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE----------- 258 (334)
T KOG0278|consen 195 DG----RILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE----------- 258 (334)
T ss_pred CC----CEEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCce-----------
Confidence 98 66543 56999999999888776533 3344 45666 44667899999999999888887
Q ss_pred cceeeecccceee-ccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 436 ELKILHLNLPVSY-ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 436 ~~~w~~~~~p~~~-~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
...| .+|-+||-|+.|||||...|+|++||++ +|.+..++
T Consensus 259 ---------i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 259 ---------IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ---------eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 2334 6899999999999999999999999999 99987653
No 44
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.88 E-value=2.2e-20 Score=199.71 Aligned_cols=316 Identities=12% Similarity=0.132 Sum_probs=238.9
Q ss_pred hhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEee--cCC
Q 001202 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS--DNK 143 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--d~~ 143 (1124)
+.+++.++...|+.+.+|+|+.|..-.+|++.+++... .+.++..+|+|+.. ++.
T Consensus 63 H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~-----------------------eltgHKDSVt~~~Fshdgt 119 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG-----------------------ELTGHKDSVTCCSFSHDGT 119 (399)
T ss_pred cCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee-----------------------EecCCCCceEEEEEccCce
Confidence 45788999999999999999999999999998765211 12233445666554 555
Q ss_pred eEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceE
Q 001202 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1124)
Q Consensus 144 ~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~ 223 (1124)
.++.|.-+|.+++ |+..+..... .+......|.-+.|+
T Consensus 120 lLATGdmsG~v~v--~~~stg~~~~----------------------------------~~~~e~~dieWl~WH------ 157 (399)
T KOG0296|consen 120 LLATGDMSGKVLV--FKVSTGGEQW----------------------------------KLDQEVEDIEWLKWH------ 157 (399)
T ss_pred EEEecCCCccEEE--EEcccCceEE----------------------------------EeecccCceEEEEec------
Confidence 5666666888877 5544432220 111223344444555
Q ss_pred EEEecCCcEEEEEecCCceEeeecccc-c--eecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeecc
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKI-D--KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~-~--~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~ 299 (1124)
|-+.+++.|+.|+.+..|...+. . ...||+..+ |=.|.|+|+.+++|..||+|++|+..+ +..+.++.
T Consensus 158 ----p~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt-g~p~~~~~--- 229 (399)
T KOG0296|consen 158 ----PRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT-GQPLHKIT--- 229 (399)
T ss_pred ----ccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCC-CceeEEec---
Confidence 66788888888888888887763 2 237999998 899999999999999999999999998 87777766
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEecc-------CCcCceeeeEEcCCCCCCcceEEEe
Q 001202 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-------ISLSSISSPIVKPNQDCKYEPLMSG 372 (1124)
Q Consensus 300 ~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~-------h~~~~V~s~~~sp~~~~~~~~l~sg 372 (1124)
+ +..++-.++.++.+|..+.+|+.++.+.+-+-.+++.+....+ .....+.++.+.|.. ++....+.|
T Consensus 230 -~---~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s-s~lpL~A~G 304 (399)
T KOG0296|consen 230 -Q---AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS-SKLPLAACG 304 (399)
T ss_pred -c---cccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc-cccchhhcc
Confidence 2 1245678999999999999999999999999988888777663 113445555555542 223555666
Q ss_pred e---eEEEEeCCCCeEEEEecCCcceEEEEec--cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeeccccee
Q 001202 373 T---SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (1124)
Q Consensus 373 ~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~--~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~ 447 (1124)
+ ++.+||.....+.... .|...|..+.+ .+.+++++.+|.++.|+.+.|.. ..+
T Consensus 305 ~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l--------------------~~~ 363 (399)
T KOG0296|consen 305 SVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQL--------------------KFT 363 (399)
T ss_pred cccceEEEEecccchhheec-cCCCceEEEEEcCcchheeeccCceEEeeeccccce--------------------EEE
Confidence 5 9999999877665554 45677877777 57899999999999999988876 678
Q ss_pred eccCCCceEEEEEccCCCEEEEEcCCCeE-EEEc
Q 001202 448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 448 ~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~ 480 (1124)
|.||+.+|...+++|++++++++|.|++. +|++
T Consensus 364 y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 364 YTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred EecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 99999999999999999999999999999 8875
No 45
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.88 E-value=2.1e-20 Score=239.45 Aligned_cols=273 Identities=16% Similarity=0.209 Sum_probs=204.8
Q ss_pred ceEEEEecCCcEEEEEecCCceEeeecccc----c------eecCCCCeE-EEEEccC-CCEEEEEecCCeEEEEEcCCC
Q 001202 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKI----D------KELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAES 288 (1124)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~----~------~~~gh~~~v-~va~spd-g~lLAsGs~DgtV~vwd~~~~ 288 (1124)
...+++++||+++++++.|+++++|+.... . ....+...+ +++|+|. +.+||+|+.||+|++||+.+
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~- 564 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR- 564 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC-
Confidence 355667799999999999999999986421 0 011233456 8999874 78999999999999999987
Q ss_pred CceeEEEeeccCCCCCCCCCCeEEEEECC-CCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcC-CCCCCc
Q 001202 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP-NQDCKY 366 (1124)
Q Consensus 289 ~~~~~~l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp-~~~~~~ 366 (1124)
++.+..+. + |.+.|++++|+| ||.+|++|+.||+|++||+.++..+.++..+ ..+.++.|++ ++
T Consensus 565 ~~~~~~~~----~----H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g---- 630 (793)
T PLN00181 565 SQLVTEMK----E----HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--ANICCVQFPSESG---- 630 (793)
T ss_pred CeEEEEec----C----CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC--CCeEEEEEeCCCC----
Confidence 66666665 5 999999999997 8899999999999999999998888888754 4688898854 45
Q ss_pred ceEEEee---eEEEEeCCCCe-EEEEecCCcceEEEEec--cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceee
Q 001202 367 EPLMSGT---SMMQWDEYGYR-LYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (1124)
Q Consensus 367 ~~l~sg~---~i~~W~~~~~~-l~~~~~~~~~~v~~~s~--~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~ 440 (1124)
..+++|+ ++.+|+....+ ......+|...|..+.+ +..+++++.|+++++|++..+.... .
T Consensus 631 ~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~-----------~-- 697 (793)
T PLN00181 631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGI-----------N-- 697 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcccc-----------C--
Confidence 6778776 89999998765 45566788888866655 7789999999999999976432100 0
Q ss_pred ecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc--E-EEecCcC-------ceeeeEEEEEEecCC--
Q 001202 441 HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--W-RVFGDIT-------QEQKIQSKGLLWLGK-- 507 (1124)
Q Consensus 441 ~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~--w-k~f~~~~-------~e~~~~v~gl~W~~~-- 507 (1124)
......+.+|...+.+++|+|+|++||+|+.||.+ +|+..... | ..|.... ....-.|..++|.++
T Consensus 698 -~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~ 776 (793)
T PLN00181 698 -ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS 776 (793)
T ss_pred -CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC
Confidence 01134677899999999999999999999999999 99976542 1 1122111 111224778999754
Q ss_pred EEEEEEEecCCCeEEEEEee
Q 001202 508 IIVVCNYIDSSNTYELLFYP 527 (1124)
Q Consensus 508 ~liv~~~~~~~~~~elrly~ 527 (1124)
.+++|+. +..|++|+
T Consensus 777 ~lva~~~-----dG~I~i~~ 791 (793)
T PLN00181 777 TLVAANS-----TGNIKILE 791 (793)
T ss_pred eEEEecC-----CCcEEEEe
Confidence 5666633 33688875
No 46
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3e-21 Score=208.34 Aligned_cols=273 Identities=16% Similarity=0.238 Sum_probs=200.7
Q ss_pred EEEeeCCeEEEEEcC-CcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCcee
Q 001202 25 IYFKVNNGLLLIASP-CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (1124)
Q Consensus 25 v~fS~dg~llA~~~~-~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~ 103 (1124)
+.||++|++||+++. .+..||.+. +...+. .+.+. ..+..++..+.||||+++|++++.+..+++||+.++....
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~-~d~~~k-l~~tl--vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~ 305 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVV-YDVHFK-LKKTL--VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRH 305 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEe-cCccee-eeeee--ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhh
Confidence 789999999999885 478899985 555432 22222 2355778889999999999999999999999999886432
Q ss_pred -ecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccc
Q 001202 104 -QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (1124)
Q Consensus 104 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i 182 (1124)
|..++ +...+.+++.||+.++++|+.|+.+..|+-|++.....
T Consensus 306 ~y~~~~---------------------~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W--------------- 349 (519)
T KOG0293|consen 306 LYPSGL---------------------GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNW--------------- 349 (519)
T ss_pred hcccCc---------------------CCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcc---------------
Confidence 11111 11224566788999999999999988766665533221
Q ss_pred cccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce--ecCCCCeE
Q 001202 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAV 260 (1124)
Q Consensus 183 ~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~--~~gh~~~v 260 (1124)
-.-....|. .+++++||+.+++...|..+++.+.++... ...-..++
T Consensus 350 ---------------------~gvr~~~v~----------dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~i 398 (519)
T KOG0293|consen 350 ---------------------EGVRDPKVH----------DLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPI 398 (519)
T ss_pred ---------------------cccccceeE----------EEEEcCCCcEEEEEecccceeeechhhhhhhccccccCce
Confidence 111223443 456678999998888898898887664322 12223455
Q ss_pred -EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCC--eEEEEEC-CCCCEEEEEECCCcEEEEEc
Q 001202 261 -CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP--VSCIAWT-PDNSAFAVGWKSRGLTVWSV 336 (1124)
Q Consensus 261 -~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~--V~~lawS-PDG~~Lasgs~Dg~I~vWdv 336 (1124)
+..+|.+++++.+--.+.++++||+.+ ...++... | |+.. +..-+|- .|..++|||++|+.|.||+.
T Consensus 399 ts~~iS~d~k~~LvnL~~qei~LWDl~e-~~lv~kY~----G----hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 399 TSFSISKDGKLALVNLQDQEIHLWDLEE-NKLVRKYF----G----HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred eEEEEcCCCcEEEEEcccCeeEEeecch-hhHHHHhh----c----ccccceEEEeccCCCCcceEEecCCCceEEEEEc
Confidence 999999999999999999999999996 66666665 5 5543 3333454 35579999999999999999
Q ss_pred CCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCC
Q 001202 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (1124)
Q Consensus 337 ~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~ 381 (1124)
.+++++.++.|| ...|++++++|.+. ..++|++ ++++|.+.
T Consensus 470 ~sgkll~~LsGH-s~~vNcVswNP~~p---~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 470 ISGKLLAVLSGH-SKTVNCVSWNPADP---EMFASASDDGTIRIWGPS 513 (519)
T ss_pred cCCceeEeecCC-cceeeEEecCCCCH---HHhhccCCCCeEEEecCC
Confidence 999999999999 67899999999763 5566665 77777764
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.88 E-value=5.4e-20 Score=202.83 Aligned_cols=270 Identities=19% Similarity=0.277 Sum_probs=206.8
Q ss_pred cccceEEEEe--ecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCC
Q 001202 130 EKGLSVSNIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (1124)
Q Consensus 130 ~~~~~v~~i~--~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~ 207 (1124)
++...|+++. ++++.+++++.+|.+.+|+.+... ... ....+
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~--~~~----------------------------------~~~~~ 50 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE--LLR----------------------------------TLKGH 50 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC--cEE----------------------------------EEecC
Confidence 3344566655 455778888889999886554321 110 11223
Q ss_pred CceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce---ecCCCCeE-EEEEccCCCEEEEEecCCeEEEE
Q 001202 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELY 283 (1124)
Q Consensus 208 ~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~---~~gh~~~v-~va~spdg~lLAsGs~DgtV~vw 283 (1124)
...+..+.+ +++++.+++++.++.+.+|+....+. ..+|...+ ++.|+|+++++++++.||.|++|
T Consensus 51 ~~~i~~~~~----------~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 120 (289)
T cd00200 51 TGPVRDVAA----------SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120 (289)
T ss_pred CcceeEEEE----------CCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEE
Confidence 344444444 47778888888899999999876432 25777777 99999999999999989999999
Q ss_pred EcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCC
Q 001202 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 363 (1124)
Q Consensus 284 d~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~ 363 (1124)
++.+ .+....+. + |.+.|.+++|+|++.++++++.|+.+++||+.+++....+..| ...+.++.++|++
T Consensus 121 ~~~~-~~~~~~~~----~----~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~- 189 (289)
T cd00200 121 DVET-GKCLTTLR----G----HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDG- 189 (289)
T ss_pred ECCC-cEEEEEec----c----CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC-ccccceEEECCCc-
Confidence 9986 66565555 3 8889999999999999999998999999999988888888876 6689999999987
Q ss_pred CCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEeecCCCccc
Q 001202 364 CKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL 437 (1124)
Q Consensus 364 ~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~ 437 (1124)
+.++.++ .+.+|+...++.......|...+..+.+ +..+++++.++.+++|++..+..
T Consensus 190 ---~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~------------- 253 (289)
T cd00200 190 ---EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC------------- 253 (289)
T ss_pred ---CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee-------------
Confidence 5555544 8899999988887777677777755444 55667777799999999765433
Q ss_pred eeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEE
Q 001202 438 KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (1124)
Q Consensus 438 ~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd 479 (1124)
...+..|..+|.+++|+|+|+++++++.||.+ +|+
T Consensus 254 -------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 254 -------VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -------EEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 23344788899999999999999999999999 985
No 48
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.5e-21 Score=207.74 Aligned_cols=223 Identities=15% Similarity=0.136 Sum_probs=178.3
Q ss_pred EEEecCCcEEEEEecCCceEeeecccccee----cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeec
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~----~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~ 298 (1124)
+.++||.+++++++.+..+++||..++... .+|...+ |++|.|||..+++|+.|+++..||++. ..+....
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg--n~~~~W~-- 350 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG--NILGNWE-- 350 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc--chhhccc--
Confidence 344488899999998888999999988765 4556777 999999999999999999999999974 3333333
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eE
Q 001202 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM 375 (1124)
Q Consensus 299 ~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i 375 (1124)
|. ....|.+++.++||+++.+...|..|++++..+......+.. ...+++...|.++ +++.... .+
T Consensus 351 --gv---r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise--~~~its~~iS~d~----k~~LvnL~~qei 419 (519)
T KOG0293|consen 351 --GV---RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE--EQPITSFSISKDG----KLALVNLQDQEI 419 (519)
T ss_pred --cc---ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccc--cCceeEEEEcCCC----cEEEEEcccCee
Confidence 21 234599999999999999999999999999987665544444 3579999999887 6655433 88
Q ss_pred EEEeCCCCeEEEEecCCcceEEE----Eec--cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeec
Q 001202 376 MQWDEYGYRLYAIEEGSSERVLI----FSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (1124)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v~~----~s~--~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~ 449 (1124)
.+||.+...++....||...-+. |.- .+.++|||.|+.+++|+...|.. ...+.
T Consensus 420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl--------------------l~~Ls 479 (519)
T KOG0293|consen 420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL--------------------LAVLS 479 (519)
T ss_pred EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce--------------------eEeec
Confidence 99999988888877888765432 222 35789999999999999777654 56788
Q ss_pred cCCCceEEEEEccC-CCEEEEEcCCCeE-EEEcC
Q 001202 450 SQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIR 481 (1124)
Q Consensus 450 ~~~~~I~~va~Spd-G~~lAvag~dG~v-lwd~~ 481 (1124)
||...|+||+++|. -.++|+||.||+| +|...
T Consensus 480 GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 480 GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999999995 5689999999999 99764
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.87 E-value=1.2e-19 Score=200.02 Aligned_cols=270 Identities=20% Similarity=0.301 Sum_probs=211.0
Q ss_pred CCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccc---eecCCCCeE-EEEEccCCCEEEEEecCCeE
Q 001202 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID---KELGSGDAV-CASIAPEQQILAVGTRRGVV 280 (1124)
Q Consensus 205 ~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~---~~~gh~~~v-~va~spdg~lLAsGs~DgtV 280 (1124)
.+|...|.++.++ ++|+.++++..++.+.+|+..+.+ ...+|...+ ++.|+|+++.+++++.||.|
T Consensus 6 ~~h~~~i~~~~~~----------~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 6 KGHTGGVTCVAFS----------PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred cccCCCEEEEEEc----------CCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeE
Confidence 3566778777666 678888888888899999887553 236788888 99999999999999999999
Q ss_pred EEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcC
Q 001202 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (1124)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp 360 (1124)
++|++.. ++....+. + |.+.|.+++|+|++..+++++.||.+.+|++.+++....+..| ...+.++.++|
T Consensus 76 ~i~~~~~-~~~~~~~~----~----~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~~~~~ 145 (289)
T cd00200 76 RLWDLET-GECVRTLT----G----HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDWVNSVAFSP 145 (289)
T ss_pred EEEEcCc-ccceEEEe----c----cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC-CCcEEEEEEcC
Confidence 9999987 55555555 3 7889999999999999999998999999999988888888876 67899999999
Q ss_pred CCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEeecCCC
Q 001202 361 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (1124)
Q Consensus 361 ~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~ 434 (1124)
++ ..++++. .+.+|+..+++.......|...+..+.+ ++.+++++.++.+++|++..+..
T Consensus 146 ~~----~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~---------- 211 (289)
T cd00200 146 DG----TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC---------- 211 (289)
T ss_pred cC----CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce----------
Confidence 86 6666654 8899999988887777777767755444 55788888899999999765333
Q ss_pred ccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEE-EecCcCceeeeEEEEEEecC--CEEE
Q 001202 435 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWLG--KIIV 510 (1124)
Q Consensus 435 ~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk-~f~~~~~e~~~~v~gl~W~~--~~li 510 (1124)
...+..|..+|.+++++|++.++++++.+|.+ +|++.+++-. .+. .+ .-.+..+.|.+ ..++
T Consensus 212 ----------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~--~~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 212 ----------LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--GH--TNSVTSLAWSPDGKRLA 277 (289)
T ss_pred ----------ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc--cc--CCcEEEEEECCCCCEEE
Confidence 23344677899999999999999999989999 9999875532 222 11 12467888976 4666
Q ss_pred EEEEecCCCeEEEEEee
Q 001202 511 VCNYIDSSNTYELLFYP 527 (1124)
Q Consensus 511 v~~~~~~~~~~elrly~ 527 (1124)
+++. +..+++|+
T Consensus 278 ~~~~-----d~~i~iw~ 289 (289)
T cd00200 278 SGSA-----DGTIRIWD 289 (289)
T ss_pred EecC-----CCeEEecC
Confidence 6532 33677773
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.87 E-value=2.2e-20 Score=200.52 Aligned_cols=270 Identities=17% Similarity=0.187 Sum_probs=205.8
Q ss_pred cceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceE
Q 001202 132 GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (1124)
Q Consensus 132 ~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I 211 (1124)
+.-|+++...++.|+.|+-||.+++|+-.|.. .. ...+|.++|
T Consensus 105 dDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~--~~-----------------------------------~~~Ght~~i 147 (423)
T KOG0313|consen 105 DDWVSSVKGASKWILTGSYDGTSRIWDLKGKS--IK-----------------------------------TIVGHTGPI 147 (423)
T ss_pred hhhhhhhcccCceEEEeecCCeeEEEecCCce--EE-----------------------------------EEecCCcce
Confidence 33456666668999999999999985444332 22 123556666
Q ss_pred EEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee-------cCCCCeE-EEEEccCCCEEEEEecCCeEEEE
Q 001202 212 IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAV-CASIAPEQQILAVGTRRGVVELY 283 (1124)
Q Consensus 212 ~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~-------~gh~~~v-~va~spdg~lLAsGs~DgtV~vw 283 (1124)
.++++-- -.+....+++++.|.++++|....++.. .||..+| ||+++++|..+++|+.|.++++|
T Consensus 148 k~v~~v~-------~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiW 220 (423)
T KOG0313|consen 148 KSVAWVI-------KNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIW 220 (423)
T ss_pred eeeEEEe-------cCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeec
Confidence 6543321 0122236888899999999987765432 5999999 99999999999999999999999
Q ss_pred EcCCCC------------------------ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001202 284 DLAESA------------------------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1124)
Q Consensus 284 d~~~~~------------------------~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~ 339 (1124)
+..... .++-++. +|+++|.+|.|++ ...+.+++.|.+|++||+.++
T Consensus 221 s~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~--------GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 221 SVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE--------GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred ccCCCccccccccchhhhhhhhhhhcccccCceEEec--------ccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence 932210 0111222 5999999999998 778999999999999999999
Q ss_pred eeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCe---EEEEecCCcceE--EEEec--cceEEeec
Q 001202 340 RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR---LYAIEEGSSERV--LIFSF--GKCCLNRG 409 (1124)
Q Consensus 340 ~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~---l~~~~~~~~~~v--~~~s~--~k~~~s~s 409 (1124)
.+..++.+ ....+++..+|.. ..+++|+ .+++||+.++. .-....||...| +.+++ ...+++++
T Consensus 292 ~~~~~~~~--~ksl~~i~~~~~~----~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 292 GLKSTLTT--NKSLNCISYSPLS----KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS 365 (423)
T ss_pred cceeeeec--CcceeEeeccccc----ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe
Confidence 99998877 3578899999977 8888887 78899998643 234566888888 44555 45789999
Q ss_pred cCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEc
Q 001202 410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 410 ~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~ 480 (1124)
.|+++++||+...... .....+|+..|.++.|+ +|.++++||.|..+ ++.-
T Consensus 366 ~D~t~klWDvRS~k~p-------------------lydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 366 YDNTVKLWDVRSTKAP-------------------LYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred cCCeEEEEEeccCCCc-------------------ceeeccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 9999999999887752 24667899999999998 78899999999999 7753
No 51
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.87 E-value=2.5e-20 Score=194.85 Aligned_cols=237 Identities=12% Similarity=0.176 Sum_probs=187.8
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEE
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~ 332 (1124)
.||.+.| ++.|+|+|..+|+|+.|..|.+|++....+...+++ | |+|+|..+.|++||+.+++++.|++++
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk----g----HsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLK----G----HSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeec----c----ccceeEeeeeccCCCEEEEecCCceEE
Confidence 6999999 999999999999999999999999876455555666 6 999999999999999999999999999
Q ss_pred EEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec---cceEE
Q 001202 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCL 406 (1124)
Q Consensus 333 vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~ 406 (1124)
.||+.+|+.+..+++| .+-|+++..+..+ ...+.||+ ++++||....+.+.+... .-++.++.| +..+.
T Consensus 116 ~wD~~tG~~~rk~k~h-~~~vNs~~p~rrg---~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGH-TSFVNSLDPSRRG---PQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVI 190 (338)
T ss_pred EEecccceeeehhccc-cceeeecCccccC---CeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEeccccccee
Confidence 9999999999999998 6778887633333 25666776 999999997776666533 456667777 67889
Q ss_pred eeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC---
Q 001202 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ--- 482 (1124)
Q Consensus 407 s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s--- 482 (1124)
+|+-|+.+++|++..++. .....||..+|..++.||+|.++.+-+-|.++ +||++-
T Consensus 191 sggIdn~ikvWd~r~~d~--------------------~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDG--------------------LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP 250 (338)
T ss_pred eccccCceeeeccccCcc--------------------eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC
Confidence 999999999999887665 45677999999999999999999999999999 999862
Q ss_pred -Cc-EEEecCcCceeeeEEEEEEecCC--EEEEEEEecCCCeEEEEEeeC
Q 001202 483 -KK-WRVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 483 -g~-wk~f~~~~~e~~~~v~gl~W~~~--~liv~~~~~~~~~~elrly~~ 528 (1124)
.| .+.|....+..+.+.....|.++ ++-++ . .+..+.+|+.
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ag-s----~dr~vyvwd~ 295 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAG-S----ADRFVYVWDT 295 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccc-c----ccceEEEeec
Confidence 33 45554433332233447788654 33333 2 2335677766
No 52
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.87 E-value=9.5e-20 Score=194.92 Aligned_cols=311 Identities=14% Similarity=0.210 Sum_probs=224.1
Q ss_pred eEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEee
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~ 297 (1124)
..+..+|+.+++++|+.|.-..+|+..+++.. .||.+.| |+.||.+|.+||+|..+|.|+||.+++ +....++.
T Consensus 68 Favsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st-g~~~~~~~- 145 (399)
T KOG0296|consen 68 FAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST-GGEQWKLD- 145 (399)
T ss_pred EEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc-CceEEEee-
Confidence 34555577888888888888889998887632 7999999 999999999999999999999999998 55444443
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---e
Q 001202 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~ 374 (1124)
+ .-+.+.=+.|+|-+..|+.|+.||.+.+|.+..+...+.+.|| ..++++-.|.|+| +.+++|. +
T Consensus 146 ---~----e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh-~~~ct~G~f~pdG----Kr~~tgy~dgt 213 (399)
T KOG0296|consen 146 ---Q----EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH-NSPCTCGEFIPDG----KRILTGYDDGT 213 (399)
T ss_pred ---c----ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCC-CCCcccccccCCC----ceEEEEecCce
Confidence 1 2345677899999999999999999999999998888899998 7889999999998 7888876 9
Q ss_pred EEEEeCCCCeEEEEecCCcce-E--EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeecc
Q 001202 375 MMQWDEYGYRLYAIEEGSSER-V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (1124)
Q Consensus 375 i~~W~~~~~~l~~~~~~~~~~-v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~ 450 (1124)
+++|++.+++.+....+.... . ..+.. +..+++++.++..++-.... .++....... .|....+
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s--gKVv~~~n~~----------~~~l~~~ 281 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS--GKVVNCNNGT----------VPELKPS 281 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcccc--ceEEEecCCC----------Ccccccc
Confidence 999999999988877643221 1 33333 55677888887776543222 2221111100 1222222
Q ss_pred CC---CceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecC-CEEEEEEEecCCCeEEEEE
Q 001202 451 QN---WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG-KIIVVCNYIDSSNTYELLF 525 (1124)
Q Consensus 451 ~~---~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~-~~liv~~~~~~~~~~elrl 525 (1124)
+. ..|.++.+|..=...|+|+-||++ +||..+.+.+.. -.+| -.|+.+.|.+ +++.+||.+ ..+|.
T Consensus 282 ~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~--c~he--~~V~~l~w~~t~~l~t~c~~-----g~v~~ 352 (399)
T KOG0296|consen 282 QEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI--CEHE--DGVTKLKWLNTDYLLTACAN-----GKVRQ 352 (399)
T ss_pred chhhhhhhhhcccccccchhhcccccceEEEEecccchhhee--ccCC--CceEEEEEcCcchheeeccC-----ceEEe
Confidence 22 345666677778899999999999 999987654432 1223 2488999988 788888773 27888
Q ss_pred eeCCCCCCcceEEEeecC-Ccc--EEEEeeCCEEEEEEcCCeEEEEEE
Q 001202 526 YPRYHLDQSSLLCRKSLL-AKP--IVMDVYEDYILVTYRPFDVHIFHV 570 (1124)
Q Consensus 526 y~~~~ld~~~~l~~~~l~-s~~--l~l~~~~~~llv~~~d~~i~l~~~ 570 (1124)
|+.. ...++.++.-. ..+ +.+++..+.++.++.|++..+|.+
T Consensus 353 wDaR---tG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 353 WDAR---TGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred eecc---ccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 8762 22333333222 233 345666677777899999999975
No 53
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=8.2e-22 Score=206.00 Aligned_cols=258 Identities=14% Similarity=0.232 Sum_probs=201.8
Q ss_pred eEEEEecCCcEEEEEecCCceEeeecccccee-----------cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCC
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA 289 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~-----------~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~ 289 (1124)
-++.|+|||+++++++.|+-+.+|+..+++.. .-+.++| |+.||.|...+|+|+.||.|+||.+.+ +
T Consensus 217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t-G 295 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET-G 295 (508)
T ss_pred hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-c
Confidence 46778899999999999999999999887643 2377899 999999999999999999999999998 8
Q ss_pred ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceE
Q 001202 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (1124)
Q Consensus 290 ~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l 369 (1124)
.+++.+. .+|+..|+|+.||.|+..+.+++.|.+++|--+.+|+++..++|| .+.|+...|.++| ..+
T Consensus 296 ~ClRrFd-------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH-sSyvn~a~ft~dG----~~i 363 (508)
T KOG0275|consen 296 QCLRRFD-------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH-SSYVNEATFTDDG----HHI 363 (508)
T ss_pred hHHHHhh-------hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc-cccccceEEcCCC----CeE
Confidence 8887665 359999999999999999999999999999999999999999999 7899999999999 888
Q ss_pred EEee---eEEEEeCCCCeEEEEecCC--cceE---EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceee
Q 001202 370 MSGT---SMMQWDEYGYRLYAIEEGS--SERV---LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (1124)
Q Consensus 370 ~sg~---~i~~W~~~~~~l~~~~~~~--~~~v---~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~ 440 (1124)
++++ ++++|+..+.+++.+.... +-.| .-++- ...++.++..+++.+-++ +| +
T Consensus 364 isaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qG-Q---------------- 425 (508)
T KOG0275|consen 364 ISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QG-Q---------------- 425 (508)
T ss_pred EEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cc-e----------------
Confidence 8766 9999999999988776532 2223 22211 334555666666655332 11 1
Q ss_pred ecccceeec---cCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecCCEEEEEEEec
Q 001202 441 HLNLPVSYI---SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYID 516 (1124)
Q Consensus 441 ~~~~p~~~~---~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~ 516 (1124)
+..++. ...+..-++++||.|.++...|+|+.. .|++.+|+...+-.. +|+ .+.|+..+++.-+.+.|.+
T Consensus 426 ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-hEk--dvIGl~HHPHqNllAsYsE 499 (508)
T KOG0275|consen 426 ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-HEK--DVIGLTHHPHQNLLASYSE 499 (508)
T ss_pred ---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-ccc--cccccccCcccchhhhhcc
Confidence 122222 123445678899999999999999999 999999987665443 333 3678888777666666643
No 54
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.1e-19 Score=211.24 Aligned_cols=237 Identities=12% Similarity=0.138 Sum_probs=198.8
Q ss_pred CCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEE
Q 001202 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVE 281 (1124)
Q Consensus 206 ~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~ 281 (1124)
.+.+.+..++|+ |....++++--.+.|++||...+..+ .+|.++| .++|+|++.++++|+.|-+|+
T Consensus 7 skSsRvKglsFH----------P~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIk 76 (1202)
T KOG0292|consen 7 SKSSRVKGLSFH----------PKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIK 76 (1202)
T ss_pred cccccccceecC----------CCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEE
Confidence 345667666676 55566666677788999998766443 6899999 999999999999999999999
Q ss_pred EEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCC
Q 001202 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (1124)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~ 361 (1124)
||+.++ .+++.++. | |-..|+.+.|++.--.|.|+|+|.||+||+..++.+++++.|| ...|-+..|+|.
T Consensus 77 VWnYk~-rrclftL~----G----HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH-nHYVMcAqFhpt 146 (1202)
T KOG0292|consen 77 VWNYKT-RRCLFTLL----G----HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH-NHYVMCAQFHPT 146 (1202)
T ss_pred EEeccc-ceehhhhc----c----ccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC-ceEEEeeccCCc
Confidence 999998 88888888 7 9999999999999999999999999999999999999999999 789999999998
Q ss_pred CCCCcceEEEee---eEEEEeCCCCe---------------------EE--------EEecCCcceE--EEEec-cceEE
Q 001202 362 QDCKYEPLMSGT---SMMQWDEYGYR---------------------LY--------AIEEGSSERV--LIFSF-GKCCL 406 (1124)
Q Consensus 362 ~~~~~~~l~sg~---~i~~W~~~~~~---------------------l~--------~~~~~~~~~v--~~~s~-~k~~~ 406 (1124)
. +.++|++ ++++||+.|-+ |+ .+..||+..| .+|.+ ...++
T Consensus 147 E----DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliV 222 (1202)
T KOG0292|consen 147 E----DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIV 222 (1202)
T ss_pred c----ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEE
Confidence 7 8899998 99999986511 11 2346788888 45555 57889
Q ss_pred eeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 407 s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
||+.|..+++|....... |+ ..+..+|.++|.++-|+|....+.+.|+|+++ +||+..+.
T Consensus 223 SG~DDRqVKlWrmnetKa--------------WE----vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 223 SGADDRQVKLWRMNETKA--------------WE----VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred ecCCcceeeEEEeccccc--------------ee----ehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 999999999998654332 43 23567999999999999999999999999999 99997654
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=7.5e-20 Score=184.88 Aligned_cols=254 Identities=19% Similarity=0.227 Sum_probs=200.7
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEE
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~ 332 (1124)
..|.++| .+.||-||++..+++.|.+||+|+... +.++++.+ | |-..|..++-+.|...+|+|+.|+.+.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r-g~liktYs----g----hG~EVlD~~~s~Dnskf~s~GgDk~v~ 84 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-GALIKTYS----G----HGHEVLDAALSSDNSKFASCGGDKAVQ 84 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccc-cceeeeec----C----CCceeeeccccccccccccCCCCceEE
Confidence 4678899 999999999999999999999999988 89999988 6 889999999999999999999999999
Q ss_pred EEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCC--CeEEEEecCCcceEEEEec-cceEE
Q 001202 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG--YRLYAIEEGSSERVLIFSF-GKCCL 406 (1124)
Q Consensus 333 vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~--~~l~~~~~~~~~~v~~~s~-~k~~~ 406 (1124)
+||+.+|+....+++| ...|+.+.|+-+. ..++||+ ++++||-.. .+.+.+.....+.|..+.. ...++
T Consensus 85 vwDV~TGkv~Rr~rgH-~aqVNtV~fNees----SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIv 159 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGH-LAQVNTVRFNEES----SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIV 159 (307)
T ss_pred EEEcccCeeeeecccc-cceeeEEEecCcc----eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEE
Confidence 9999999999999999 7899999998776 7888887 999999764 5667777666778888888 77899
Q ss_pred eeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcE
Q 001202 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (1124)
Q Consensus 407 s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~w 485 (1124)
+|+.||+++.+++..|.. ...|.+| ||++++||+||+...+++-|+++ +-|-.||+.
T Consensus 160 aGS~DGtvRtydiR~G~l--------------------~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTL--------------------SSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred eeccCCcEEEEEeeccee--------------------ehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence 999999999999988765 4456665 89999999999999999999999 999999873
Q ss_pred EEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEeecCCccEEEE
Q 001202 486 RVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD 550 (1124)
Q Consensus 486 k~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~~~ld~~~~l~~~~l~s~~l~l~ 550 (1124)
-.--.-.+..+|.+....-..+-.++++. .+..+-+|+.. +..++...++++.++..+
T Consensus 218 L~sYkGhkn~eykldc~l~qsdthV~sgS----EDG~Vy~wdLv---d~~~~sk~~~~~~v~v~d 275 (307)
T KOG0316|consen 218 LKSYKGHKNMEYKLDCCLNQSDTHVFSGS----EDGKVYFWDLV---DETQISKLSVVSTVIVTD 275 (307)
T ss_pred HHHhcccccceeeeeeeecccceeEEecc----CCceEEEEEec---cceeeeeeccCCceeEEe
Confidence 21111112233444322222333333332 33477888763 334555666666664443
No 56
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=1.4e-20 Score=196.33 Aligned_cols=239 Identities=16% Similarity=0.215 Sum_probs=180.3
Q ss_pred ccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee-----cCCCCeE-EEEEccCCCEEEEEec
Q 001202 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPEQQILAVGTR 276 (1124)
Q Consensus 203 ~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~-----~gh~~~v-~va~spdg~lLAsGs~ 276 (1124)
.++.|--.|.+++|+ |-..++++++.|++++++|..+.... ..-...| |++|+|.|.+|++|..
T Consensus 167 TlYDH~devn~l~FH----------Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd 236 (430)
T KOG0640|consen 167 TLYDHVDEVNDLDFH----------PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD 236 (430)
T ss_pred ehhhccCcccceeec----------chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC
Confidence 355666778777777 66788999999999999998754321 2335678 9999999999999999
Q ss_pred CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEecc-CCcCceee
Q 001202 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-ISLSSISS 355 (1124)
Q Consensus 277 DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~-h~~~~V~s 355 (1124)
--++++||+++ .++..... ++.+ |++.|++|.+|+.|+.-++|+.||.|++||--+++|+.++.. |+.+.|.+
T Consensus 237 Hp~~rlYdv~T-~Qcfvsan-Pd~q----ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcS 310 (430)
T KOG0640|consen 237 HPTLRLYDVNT-YQCFVSAN-PDDQ----HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCS 310 (430)
T ss_pred CCceeEEeccc-eeEeeecC-cccc----cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeee
Confidence 99999999998 44433222 2224 999999999999999999999999999999999999999976 77889999
Q ss_pred eEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCC--cceE-----EEEec-cceEEe-eccCCceeeeEeeecC
Q 001202 356 PIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS--SERV-----LIFSF-GKCCLN-RGVSGMTYARQVIYGE 423 (1124)
Q Consensus 356 ~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~--~~~v-----~~~s~-~k~~~s-~s~d~~v~~w~l~~~~ 423 (1124)
..|..++ ++++|.+ .+++|.+.+++.+....|. .++. ..|.- ...++. --..+.+..|+..+++
T Consensus 311 a~Ftkn~----kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad 386 (430)
T KOG0640|consen 311 AVFTKNG----KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD 386 (430)
T ss_pred EEEccCC----eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchh
Confidence 9999998 8887755 8999999999988876542 1111 11111 111111 1112344556655544
Q ss_pred CeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEc
Q 001202 424 DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 424 ~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~ 480 (1124)
.. ..--.+||++++++.-||.+.-+.++|.|-.+ .|--
T Consensus 387 r~-------------------~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 387 RV-------------------ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hh-------------------hhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 31 22335899999999999999999999999988 8854
No 57
>PTZ00421 coronin; Provisional
Probab=99.85 E-value=5.4e-19 Score=210.73 Aligned_cols=201 Identities=14% Similarity=0.161 Sum_probs=158.7
Q ss_pred ecCCCCeE-EEEEcc-CCCEEEEEecCCeEEEEEcCCCC------ceeEEEeeccCCCCCCCCCCeEEEEECCCC-CEEE
Q 001202 253 ELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESA------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFA 323 (1124)
Q Consensus 253 ~~gh~~~v-~va~sp-dg~lLAsGs~DgtV~vwd~~~~~------~~~~~l~~~~~g~~~~h~g~V~~lawSPDG-~~La 323 (1124)
+.||.+.| +++|+| ++.+||+|+.||+|++||+.+.+ ..+..+. | |.+.|.+++|+|++ ..|+
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~----g----H~~~V~~l~f~P~~~~iLa 142 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ----G----HTKKVGIVSFHPSAMNVLA 142 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec----C----CCCcEEEEEeCcCCCCEEE
Confidence 46899999 999999 88999999999999999997622 2334444 5 99999999999986 6999
Q ss_pred EEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceE---E
Q 001202 324 VGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV---L 397 (1124)
Q Consensus 324 sgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v---~ 397 (1124)
+|+.|++|+|||+.++....++.+| ...|.+++|+|++ ..+++|+ ++++||+.+++......+|.... .
T Consensus 143 Sgs~DgtVrIWDl~tg~~~~~l~~h-~~~V~sla~spdG----~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~ 217 (493)
T PTZ00421 143 SAGADMVVNVWDVERGKAVEVIKCH-SDQITSLEWNLDG----SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRC 217 (493)
T ss_pred EEeCCCEEEEEECCCCeEEEEEcCC-CCceEEEEEECCC----CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEE
Confidence 9999999999999999999999888 6789999999998 7888877 89999999998887777776432 2
Q ss_pred EEec-cceEEeec----cCCceeeeEeeecCCeEEEeecCCCccceeeecccceeec-cCCCceEEEEEccCCCEEEEEc
Q 001202 398 IFSF-GKCCLNRG----VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQHVAASKDGMFLAVAG 471 (1124)
Q Consensus 398 ~~s~-~k~~~s~s----~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~-~~~~~I~~va~SpdG~~lAvag 471 (1124)
.+.. ...+++++ .|+.+++||+......+ .... .+...+....|++||+++++||
T Consensus 218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~-------------------~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY-------------------STVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce-------------------eEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 3333 44555543 57899999986544311 1111 2233466678999999999998
Q ss_pred C-CCeE-EEEcCCCcE
Q 001202 472 L-HGLI-LYDIRQKKW 485 (1124)
Q Consensus 472 ~-dG~v-lwd~~sg~w 485 (1124)
. ||.| +||+.+++.
T Consensus 279 kgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 279 KGEGNIRCFELMNERL 294 (493)
T ss_pred eCCCeEEEEEeeCCce
Confidence 5 9999 999988763
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.84 E-value=1e-20 Score=208.70 Aligned_cols=254 Identities=16% Similarity=0.238 Sum_probs=188.7
Q ss_pred ecCCCCeE-EEEEcc-CCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCc
Q 001202 253 ELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (1124)
Q Consensus 253 ~~gh~~~v-~va~sp-dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~ 330 (1124)
|.||++.| ++.|.| .+.+|++|+.|+.|+||++-+.+++++++. | |..+|.+++|+++|..+.|++.|++
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~----g----H~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK----G----HRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh----c----chhhhhhhhccccCCeeeeeeccee
Confidence 37999999 999999 899999999999999999988789999998 7 9999999999999999999999999
Q ss_pred EEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee--eEEEEeCCCCeEEEEecCCcceEEEEec---cceE
Q 001202 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCC 405 (1124)
Q Consensus 331 I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~ 405 (1124)
+++||+++|++...+.. ...++++.|+|++ .+..++.|+ .++.||..+++++.....|-+.|..+.| ++..
T Consensus 282 lKlwDtETG~~~~~f~~--~~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHL--DKVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred eeeeccccceEEEEEec--CCCceeeecCCCC--CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceE
Confidence 99999999999988865 3568899999997 224455444 8999999999977766666677766666 8999
Q ss_pred EeeccCCceeeeEeeecCCeEEEeec--CCCcc------cee-------------e-----ecccceeeccCCCc--eEE
Q 001202 406 LNRGVSGMTYARQVIYGEDRLLVVQS--EDTDE------LKI-------------L-----HLNLPVSYISQNWP--VQH 457 (1124)
Q Consensus 406 ~s~s~d~~v~~w~l~~~~~~l~l~~~--~~~~~------~~w-------------~-----~~~~p~~~~~~~~~--I~~ 457 (1124)
++.+.|+++++|.....-.--++... +..|. ..| . ....-..+.+|.-+ -..
T Consensus 358 issSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 358 ISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred eeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence 99999999999986544321111111 11110 011 0 01111245566433 456
Q ss_pred EEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecCC---EEEEEEEecCCCeEEEEEe
Q 001202 458 VAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK---IIVVCNYIDSSNTYELLFY 526 (1124)
Q Consensus 458 va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~---~liv~~~~~~~~~~elrly 526 (1124)
+.|||||++|++|..||.+ +||.+|-+ ++... +..+-.|+++.|++. .+++|+. + ..|.+|
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt~k--l~~~l-kah~~~ci~v~wHP~e~Skvat~~w---~--G~Ikiw 502 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKTTK--LVSKL-KAHDQPCIGVDWHPVEPSKVATCGW---D--GLIKIW 502 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechhhh--hhhcc-ccCCcceEEEEecCCCcceeEeccc---C--ceeEec
Confidence 8999999999999999999 99988753 22111 111236889999853 5666643 2 256666
No 59
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=4.6e-19 Score=181.98 Aligned_cols=258 Identities=14% Similarity=0.216 Sum_probs=197.0
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee-----cCCCCeE-EEEEccC-CCEEEEEec
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPE-QQILAVGTR 276 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~-----~gh~~~v-~va~spd-g~lLAsGs~ 276 (1124)
...+.+.+.++.|+ .||..+++++.|+++.+|+....+.. .||++.| .++|+|. ..++|+++.
T Consensus 16 ~~~~~~~v~Sv~wn----------~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~ 85 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWN----------CDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG 85 (313)
T ss_pred hhhhhhcceEEEEc----------ccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecC
Confidence 34566667665555 89999999999999999988755322 6899989 8888885 568999999
Q ss_pred CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeee
Q 001202 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 356 (1124)
Q Consensus 277 DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~ 356 (1124)
|.+|++||+.. +++...+. .++.-.-+.|||||.++++|+.|..|...|..+.+.+.+.+. .-.+..+
T Consensus 86 dk~ir~wd~r~-~k~~~~i~---------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~--~~e~ne~ 153 (313)
T KOG1407|consen 86 DKTIRIWDIRS-GKCTARIE---------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF--KFEVNEI 153 (313)
T ss_pred CceEEEEEecc-CcEEEEee---------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc--cceeeee
Confidence 99999999998 88777766 456667899999999999999999999999998887776655 3457778
Q ss_pred EEcCCCCCCcceEEEe-e--eEEEEeCCCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEee
Q 001202 357 IVKPNQDCKYEPLMSG-T--SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (1124)
Q Consensus 357 ~~sp~~~~~~~~l~sg-~--~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~ 430 (1124)
+|+.++ ..-.+.+| + .++.|- .-+.+...+.|....+++.| ||.+++|+.|..+.+||+..--
T Consensus 154 ~w~~~n--d~Fflt~GlG~v~ILsyp--sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi------- 222 (313)
T KOG1407|consen 154 SWNNSN--DLFFLTNGLGCVEILSYP--SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI------- 222 (313)
T ss_pred eecCCC--CEEEEecCCceEEEEecc--ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh-------
Confidence 887444 11223344 2 555554 55667778888877765555 9999999999999999964322
Q ss_pred cCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc--EEEecCcCceeeeEEEEEEecCC
Q 001202 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--WRVFGDITQEQKIQSKGLLWLGK 507 (1124)
Q Consensus 431 ~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~--wk~f~~~~~e~~~~v~gl~W~~~ 507 (1124)
+...+.-+.|||+.++||-||++||+|++|-.| |=++.||. |+.- .+ -....++|+++
T Consensus 223 -------------C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~----~~--~~t~tVAWHPk 283 (313)
T KOG1407|consen 223 -------------CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP----CE--GPTFTVAWHPK 283 (313)
T ss_pred -------------hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee----cc--CCceeEEecCC
Confidence 245566789999999999999999999999999 99999885 3211 11 12336899987
Q ss_pred EEEEEE
Q 001202 508 IIVVCN 513 (1124)
Q Consensus 508 ~liv~~ 513 (1124)
..+.+.
T Consensus 284 ~~LLAy 289 (313)
T KOG1407|consen 284 RPLLAY 289 (313)
T ss_pred CceeeE
Confidence 666553
No 60
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.84 E-value=2.2e-19 Score=192.91 Aligned_cols=263 Identities=13% Similarity=0.130 Sum_probs=201.6
Q ss_pred CcEEEEEecCCceEeeeccccc--eecCCCCeE-EEEE-ccC--CCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCC
Q 001202 230 GQLMSCSVSKKGLKLAEFIKID--KELGSGDAV-CASI-APE--QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (1124)
Q Consensus 230 G~~~~~~~~d~~i~~wd~~~~~--~~~gh~~~v-~va~-spd--g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~ 303 (1124)
++.+++++-|+++++|+..-.. ...||.+++ .+++ .++ ...+++++.|.++++|.++. +...........|
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~-~~~~~~~~~~~~G-- 191 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV-GENKVKALKVCRG-- 191 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC-chhhhhHHhHhcc--
Confidence 7889999999999999865322 237999999 5554 443 33699999999999999987 4332211111115
Q ss_pred CCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcC-------------------------CCeeeEEeccCCcCceeeeEE
Q 001202 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-------------------------GCRLMSTIRQISLSSISSPIV 358 (1124)
Q Consensus 304 ~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~-------------------------~~~l~~tl~~h~~~~V~s~~~ 358 (1124)
|.++|-+|+-.+||.++++|+.|.+++||+.. .+..+.++.|| ...|.++.|
T Consensus 192 --Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH-t~~Vs~V~w 268 (423)
T KOG0313|consen 192 --HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH-TEPVSSVVW 268 (423)
T ss_pred --cccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc-ccceeeEEE
Confidence 99999999999999999999999999999931 23457788888 899999999
Q ss_pred cCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEeecC
Q 001202 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 432 (1124)
Q Consensus 359 sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~ 432 (1124)
++. ..+.|++ +++.||.+++.+.....+ ...+.+++. .+.+++||.|.-+++||-..++..+
T Consensus 269 ~d~-----~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~------ 336 (423)
T KOG0313|consen 269 SDA-----TVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV------ 336 (423)
T ss_pred cCC-----CceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce------
Confidence 885 4556666 999999999988877655 334444444 6788999999999999988876643
Q ss_pred CCccceeeecccceeeccCCCceEEEEEccCC-CEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecCCEE-
Q 001202 433 DTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKII- 509 (1124)
Q Consensus 433 ~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG-~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~l- 509 (1124)
...+|.+|+..|.++.++|.. ..+++|+.||++ +||+++-+-.++.-..|+. .|..+.|+...+
T Consensus 337 -----------v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D--Kvl~vdW~~~~~I 403 (423)
T KOG0313|consen 337 -----------VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND--KVLSVDWNEGGLI 403 (423)
T ss_pred -----------eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc--eEEEEeccCCceE
Confidence 246889999999999999965 567899999999 9999987656665544533 577889998755
Q ss_pred EEEEEecCCCeEEEEEeeC
Q 001202 510 VVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 510 iv~~~~~~~~~~elrly~~ 528 (1124)
+.|+. +.+||+|..
T Consensus 404 vSGGa-----D~~l~i~~~ 417 (423)
T KOG0313|consen 404 VSGGA-----DNKLRIFKG 417 (423)
T ss_pred EeccC-----cceEEEecc
Confidence 44533 347888855
No 61
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.84 E-value=7.6e-19 Score=180.84 Aligned_cols=253 Identities=17% Similarity=0.194 Sum_probs=197.8
Q ss_pred ccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCC
Q 001202 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRG 278 (1124)
Q Consensus 203 ~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~Dg 278 (1124)
.+.+|.-+++.+.|+ -+|.++++++.|.++.+|-..+++++ .||+++| |++++.+.+.+.+|++|.
T Consensus 5 ~l~GHERplTqiKyN----------~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~ 74 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYN----------REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQ 74 (327)
T ss_pred ccccCccccceEEec----------CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccc
Confidence 356788889988888 78999999999999999988888776 7999999 999999999999999999
Q ss_pred eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC-----CcEEEEEcC-------CCeeeEEec
Q 001202 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-----RGLTVWSVS-------GCRLMSTIR 346 (1124)
Q Consensus 279 tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D-----g~I~vWdv~-------~~~l~~tl~ 346 (1124)
++++||+.+ ++.+.+++ -..+|..+.|+++|++++...++ +.|.++++. +..+...+.
T Consensus 75 t~kLWDv~t-Gk~la~~k---------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 75 TAKLWDVET-GKQLATWK---------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP 144 (327)
T ss_pred eeEEEEcCC-CcEEEEee---------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence 999999998 88888887 46779999999999988776543 578999987 445566665
Q ss_pred cCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEE-EecCCcceE--EEEec-cceEEeeccCCceeeeEe
Q 001202 347 QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYA-IEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQV 419 (1124)
Q Consensus 347 ~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~-~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l 419 (1124)
-+ .+.+++..|+|-+ +.+++|. .+..|++.+++.+. ....|...| ++++. ....+|+|.|.+.++||.
T Consensus 145 t~-~skit~a~Wg~l~----~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 145 TP-DSKITSALWGPLG----ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred CC-ccceeeeeecccC----CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeec
Confidence 55 5788899999988 8888876 89999999875554 446677788 45555 678899999999999996
Q ss_pred eecC--------------------CeEEEeecCCCccc--------e----eeec---ccceeeccCCCceEEEEEccCC
Q 001202 420 IYGE--------------------DRLLVVQSEDTDEL--------K----ILHL---NLPVSYISQNWPVQHVAASKDG 464 (1124)
Q Consensus 420 ~~~~--------------------~~l~l~~~~~~~~~--------~----w~~~---~~p~~~~~~~~~I~~va~SpdG 464 (1124)
..-. +.+.+-.|.+..+. + ..+. .-...+.+|-+||+++||+|||
T Consensus 220 ~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG 299 (327)
T KOG0643|consen 220 RTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG 299 (327)
T ss_pred cceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC
Confidence 5321 11222222222111 0 1111 1123577999999999999999
Q ss_pred CEEEEEcCCCeE-EEEc
Q 001202 465 MFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 465 ~~lAvag~dG~v-lwd~ 480 (1124)
+..++||+||.+ +.-.
T Consensus 300 ksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 300 KSYSSGGEDGYVRLHHF 316 (327)
T ss_pred cccccCCCCceEEEEEe
Confidence 999999999999 6543
No 62
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.83 E-value=4.1e-20 Score=193.36 Aligned_cols=222 Identities=15% Similarity=0.202 Sum_probs=170.0
Q ss_pred EecCCcEEEEEecCCceEeeecccccee----cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccC
Q 001202 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (1124)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~wd~~~~~~~----~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~ 300 (1124)
|+.|...+++|+.|+.|++|...++.++ ..|+..| |++||.|++.+.+++.|.+||+..+.. +++++.++
T Consensus 271 FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-GK~LKEfr---- 345 (508)
T KOG0275|consen 271 FSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-GKCLKEFR---- 345 (508)
T ss_pred ecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-chhHHHhc----
Confidence 3467778888889999999999999876 5799999 999999999999999999999999998 88888888
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCC-cCceeeeEEcCCCCCCcceEEEe--eeEEE
Q 001202 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQDCKYEPLMSG--TSMMQ 377 (1124)
Q Consensus 301 g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~-~~~V~s~~~sp~~~~~~~~l~sg--~~i~~ 377 (1124)
| |+..|+...|++||..+++++.||+|+||+..+..|+.+++-.+ .-+|+++..-|..+. ..++.. .++.+
T Consensus 346 G----HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe--h~iVCNrsntv~i 419 (508)
T KOG0275|consen 346 G----HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE--HFIVCNRSNTVYI 419 (508)
T ss_pred C----ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc--eEEEEcCCCeEEE
Confidence 7 99999999999999999999999999999999999999998643 346888887776531 222221 14445
Q ss_pred EeCCCCeEEEEec-CC--cc-eE-EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccC
Q 001202 378 WDEYGYRLYAIEE-GS--SE-RV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (1124)
Q Consensus 378 W~~~~~~l~~~~~-~~--~~-~v-~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~ 451 (1124)
-+..| +++.... |. .+ -| ..+++ |..+...+.|+....+.+..|.- -.++..|
T Consensus 420 mn~qG-QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L--------------------E~tl~Vh 478 (508)
T KOG0275|consen 420 MNMQG-QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL--------------------ERTLPVH 478 (508)
T ss_pred Eeccc-eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce--------------------eeeeecc
Confidence 55543 3433332 21 11 22 45566 77777777787777776666554 2344456
Q ss_pred CCceEEEEEccCCCEEEEEcCCCeE-EEE
Q 001202 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (1124)
Q Consensus 452 ~~~I~~va~SpdG~~lAvag~dG~v-lwd 479 (1124)
...|-.++-+|..+.+|+=++||+. +|.
T Consensus 479 EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 479 EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccccCcccchhhhhcccchhhhcC
Confidence 6667778889999999999999999 884
No 63
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.4e-19 Score=183.36 Aligned_cols=200 Identities=12% Similarity=0.150 Sum_probs=157.3
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccC-CCEEEEEecCC
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPE-QQILAVGTRRG 278 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spd-g~lLAsGs~Dg 278 (1124)
+.+|+..|.++++++ -+++.+++++-|+|+|+|+...+... .||.+.| .++|||. ..++|+++.||
T Consensus 100 ~kEH~~EV~Svdwn~---------~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 100 FKEHKREVYSVDWNT---------VRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred HHhhhhheEEecccc---------ccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 568889999999985 45777888899999999998766433 7999999 9999995 78999999999
Q ss_pred eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECC-CCCEEEEEECCCcEEEEEcCCCe-eeEEeccCCcCceeee
Q 001202 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSP 356 (1124)
Q Consensus 279 tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I~vWdv~~~~-l~~tl~~h~~~~V~s~ 356 (1124)
+.++||++..++.+. +. .|...+.|+.|+. |.+.++||+.|+.|++||+..-+ .+..|.+| .-.|..+
T Consensus 171 ~l~lwdvr~~gk~~~-i~--------ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh-~~AVRkv 240 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMS-IE--------AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH-GLAVRKV 240 (311)
T ss_pred eEEEEEecCCCceeE-EE--------eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC-ceEEEEE
Confidence 999999998665544 44 2888899999996 67799999999999999997643 35555555 2334444
Q ss_pred EEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCcc
Q 001202 357 IVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE 436 (1124)
Q Consensus 357 ~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~ 436 (1124)
.|||.. ...++|++.|.++++|+...++.
T Consensus 241 k~Sph~---------------------------------------~~lLaSasYDmT~riw~~~~~ds------------ 269 (311)
T KOG0277|consen 241 KFSPHH---------------------------------------ASLLASASYDMTVRIWDPERQDS------------ 269 (311)
T ss_pred ecCcch---------------------------------------hhHhhhccccceEEecccccchh------------
Confidence 444432 23457888999999999765554
Q ss_pred ceeeecccceeeccCCCceEEEEEcc-CCCEEEEEcCCCeE-EEEc
Q 001202 437 LKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 437 ~~w~~~~~p~~~~~~~~~I~~va~Sp-dG~~lAvag~dG~v-lwd~ 480 (1124)
...++..|..-|..+.||+ ++.++|+.|-|+.+ +|+.
T Consensus 270 -------~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 270 -------AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -------hhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 2456667888888899986 68899999999999 9984
No 64
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.83 E-value=6.4e-19 Score=210.35 Aligned_cols=268 Identities=17% Similarity=0.243 Sum_probs=218.2
Q ss_pred cceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceE
Q 001202 132 GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (1124)
Q Consensus 132 ~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I 211 (1124)
+..+.|.....+.+..++.+.+++. |+....... ...+.+|.+.|
T Consensus 208 ~~~~~~~q~~~~~~~~~s~~~tl~~--~~~~~~~~i---------------------------------~~~l~GH~g~V 252 (537)
T KOG0274|consen 208 DHVVLCLQLHDGFFKSGSDDSTLHL--WDLNNGYLI---------------------------------LTRLVGHFGGV 252 (537)
T ss_pred cchhhhheeecCeEEecCCCceeEE--eecccceEE---------------------------------EeeccCCCCCc
Confidence 3445666666778888888888855 664432211 11255777888
Q ss_pred EEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCC
Q 001202 212 IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE 287 (1124)
Q Consensus 212 ~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~ 287 (1124)
..+++. .-+..+++++.|.++++||..++++. .||.+.+ |+.. ....+++|+.|.+|++|++.+
T Consensus 253 ~~l~~~----------~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n 320 (537)
T KOG0274|consen 253 WGLAFP----------SGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTN 320 (537)
T ss_pred eeEEEe----------cCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccC
Confidence 776665 45788999999999999999999875 7899988 7654 445788899999999999998
Q ss_pred CCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcc
Q 001202 288 SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE 367 (1124)
Q Consensus 288 ~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~ 367 (1124)
+..++++. | |+++|+++... +.++++|+.|++|+||++.+++++.++.+| ...|.++.+.+. +
T Consensus 321 -~~~l~l~~----~----h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH-~~~V~sl~~~~~-----~ 383 (537)
T KOG0274|consen 321 -GACLNLLR----G----HTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH-TGRVYSLIVDSE-----N 383 (537)
T ss_pred -cceEEEec----c----ccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCC-cceEEEEEecCc-----c
Confidence 88888887 5 99999999987 889999999999999999999999999998 889999987653 4
Q ss_pred eEEEee---eEEEEeCCCC-eEEEEecCCcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeec
Q 001202 368 PLMSGT---SMMQWDEYGY-RLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (1124)
Q Consensus 368 ~l~sg~---~i~~W~~~~~-~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~ 442 (1124)
.+.+|+ ++++||.++. ++..+..+|..-+..+.+ .+.+++++.|+++++||...++.
T Consensus 384 ~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~------------------ 445 (537)
T KOG0274|consen 384 RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGEC------------------ 445 (537)
T ss_pred eEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCce------------------
Confidence 567777 8999999999 999999999888877777 88999999999999999887776
Q ss_pred ccceeecc-CCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcE
Q 001202 443 NLPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (1124)
Q Consensus 443 ~~p~~~~~-~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~w 485 (1124)
..++.+ |...|..+++. ...+++++.||.+ +||+.++.-
T Consensus 446 --~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 446 --LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred --eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 334444 55778777776 5788899999999 999998763
No 65
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.2e-17 Score=165.58 Aligned_cols=264 Identities=14% Similarity=0.201 Sum_probs=177.9
Q ss_pred eEEEEeeCCeEEEEEcCC-cEEEEecC---CC-------ce-eEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCe
Q 001202 23 QIIYFKVNNGLLLIASPC-HIELWSSS---QH-------KV-RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLY 90 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~~~-~l~IW~~~---~~-------~~-~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~ 90 (1124)
..|+|-|.|.+.|+++.+ +++|--.. ++ .. +...++|+.. +.|++.+++|||+|+.||+++.|.+
T Consensus 36 rav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~kh---hkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 36 RAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKH---HKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred eeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccc---cCccEEEEEecCccCeEEecCCCce
Confidence 348899999999998865 67776431 00 00 1233455532 4699999999999999999999999
Q ss_pred EEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEee--c---CCeEEEEecCCcEEEEeccCcccc
Q 001202 91 LHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS--D---NKHMLLGLSDGSLYSISWKGEFYG 165 (1124)
Q Consensus 91 l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--d---~~~llv~t~dg~v~~~~Wd~~~~~ 165 (1124)
|++...+..... ..++. ++ +.-+++.|..++. + +..+++....|...++.-|-..+.
T Consensus 113 ik~l~fn~dt~~--~~g~d--------le--------~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 113 IKVLPFNADTCN--ATGHD--------LE--------FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EEEEeccccccc--ccCcc--------ee--------eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 998766543221 11111 11 1223444544332 1 234555555555555434422222
Q ss_pred ceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEee
Q 001202 166 AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLA 245 (1124)
Q Consensus 166 ~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~w 245 (1124)
.+. .+.+|.+.|.. -.+-+|-.+++++.|.+++.|
T Consensus 175 ~~~----------------------------------a~sghtghila-----------lyswn~~m~~sgsqdktirfw 209 (350)
T KOG0641|consen 175 GFH----------------------------------ALSGHTGHILA-----------LYSWNGAMFASGSQDKTIRFW 209 (350)
T ss_pred cce----------------------------------eecCCcccEEE-----------EEEecCcEEEccCCCceEEEE
Confidence 210 12355555533 334578889999999999999
Q ss_pred ecccccee-----cCC-----CCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEE
Q 001202 246 EFIKIDKE-----LGS-----GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA 314 (1124)
Q Consensus 246 d~~~~~~~-----~gh-----~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~la 314 (1124)
|..-+.+. ..| ..+| .|++.|.|++||+|-.|....+||+.. +..++.+. + |+..|.|+.
T Consensus 210 dlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~----p----hsadir~vr 280 (350)
T KOG0641|consen 210 DLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFH----P----HSADIRCVR 280 (350)
T ss_pred eeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC-CceeeeeC----C----CccceeEEE
Confidence 98765443 112 2567 999999999999999999999999998 88888887 5 999999999
Q ss_pred ECCCCCEEEEEECCCcEEEEEcCCCe----eeEEeccCCcCceeeeEEcCCC
Q 001202 315 WTPDNSAFAVGWKSRGLTVWSVSGCR----LMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 315 wSPDG~~Lasgs~Dg~I~vWdv~~~~----l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
|||...++.+|+.|..|++-|+.|.. .+.....| .+.+..+.|+|.+
T Consensus 281 fsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh-kdk~i~~rwh~~d 331 (350)
T KOG0641|consen 281 FSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH-KDKAIQCRWHPQD 331 (350)
T ss_pred eCCCceEEEEecccceEEEeecccchhhcCceEEEEec-cCceEEEEecCcc
Confidence 99999999999999999999998742 12223334 4555556666654
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=3e-18 Score=189.86 Aligned_cols=274 Identities=16% Similarity=0.222 Sum_probs=195.6
Q ss_pred hhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCe
Q 001202 65 QREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKH 144 (1124)
Q Consensus 65 ~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~ 144 (1124)
+++..+.+++|||...+=++.|+.-.+.||+..+-.....+ .+| + +....-+|..||..
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~----------------srF----k-~~v~s~~fR~DG~L 82 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTF----------------SRF----K-DVVYSVDFRSDGRL 82 (487)
T ss_pred cccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhH----------------Hhh----c-cceeEEEeecCCeE
Confidence 45778899999996665455555667999987653211000 011 1 11223356678888
Q ss_pred EEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEE
Q 001202 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1124)
Q Consensus 145 llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~ 224 (1124)
+++|-..|.|++++... ... + ..+..|..+|....|+|
T Consensus 83 laaGD~sG~V~vfD~k~---r~i-----------L----------------------R~~~ah~apv~~~~f~~------ 120 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKS---RVI-----------L----------------------RQLYAHQAPVHVTKFSP------ 120 (487)
T ss_pred EEccCCcCcEEEecccc---HHH-----------H----------------------HHHhhccCceeEEEecc------
Confidence 88888999999976222 111 0 12457788888777875
Q ss_pred EEecCCcEEEEEecCCceEeeeccccce---ecCCCCeE-EEEEccC-CCEEEEEecCCeEEEEEcCCCCceeEEEeecc
Q 001202 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1124)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~wd~~~~~~---~~gh~~~v-~va~spd-g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~ 299 (1124)
.|++.++++++|+.++.||..++.. +.||+|.| |.+++|. +.++++|+.||+||+||+...+..+..+.
T Consensus 121 ---~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--- 194 (487)
T KOG0310|consen 121 ---QDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--- 194 (487)
T ss_pred ---cCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec---
Confidence 3567788888889999999887653 27999999 9999997 45899999999999999987445555665
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcC-CCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEE
Q 001202 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQW 378 (1124)
Q Consensus 300 ~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~-~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W 378 (1124)
|..||..+.+-|.|..+|+++.+ .|+|||+. |+++++....| ...|+++++..++ .
T Consensus 195 ------hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H-~KtVTcL~l~s~~----~----------- 251 (487)
T KOG0310|consen 195 ------HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNH-NKTVTCLRLASDS----T----------- 251 (487)
T ss_pred ------CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcc-cceEEEEEeecCC----c-----------
Confidence 89999999999999999999985 89999998 67777777666 5667777765543 2
Q ss_pred eCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEE
Q 001202 379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (1124)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~v 458 (1124)
.++|++-|+-+++++.. +-++ ... ..-.+||-++
T Consensus 252 -------------------------rLlS~sLD~~VKVfd~t--~~Kv------------------v~s-~~~~~pvLsi 285 (487)
T KOG0310|consen 252 -------------------------RLLSGSLDRHVKVFDTT--NYKV------------------VHS-WKYPGPVLSI 285 (487)
T ss_pred -------------------------eEeecccccceEEEEcc--ceEE------------------EEe-eecccceeeE
Confidence 23455666666665521 1110 010 1234689999
Q ss_pred EEccCCCEEEEEcCCCeE
Q 001202 459 AASKDGMFLAVAGLHGLI 476 (1124)
Q Consensus 459 a~SpdG~~lAvag~dG~v 476 (1124)
++|||++.+++|..+|.+
T Consensus 286 avs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 286 AVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred EecCCCceEEEeccccee
Confidence 999999999999999988
No 67
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.9e-18 Score=195.56 Aligned_cols=267 Identities=18% Similarity=0.303 Sum_probs=202.9
Q ss_pred EEEeeCCeEEEEEcCCcEEEEecCCCce-eEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCcee
Q 001202 25 IYFKVNNGLLLIASPCHIELWSSSQHKV-RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (1124)
Q Consensus 25 v~fS~dg~llA~~~~~~l~IW~~~~~~~-~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~ 103 (1124)
+..| ....+|++-...|++|+.....+ .+... . .+.++++.|+|+|+.||+|+.+|.+.|||+....+.-
T Consensus 183 ldWs-s~n~laValg~~vylW~~~s~~v~~l~~~-------~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~ 253 (484)
T KOG0305|consen 183 LDWS-SANVLAVALGQSVYLWSASSGSVTELCSF-------G-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR 253 (484)
T ss_pred hhcc-cCCeEEEEecceEEEEecCCCceEEeEec-------C-CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc
Confidence 3445 23477888888899999963221 22211 1 4668899999999999999999999999987543211
Q ss_pred ecCCCCCCCcceeeEEEEeeeeeeccc-ccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccc
Q 001202 104 QIGGKQPSGLFFIKISLVLNEQLPFAE-KGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (1124)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i 182 (1124)
. +.+ +...|.|++..+..+.+|+.+|.|..++.... ...
T Consensus 254 ~-----------------------~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~--~~~--------------- 293 (484)
T KOG0305|consen 254 T-----------------------LRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRIS--QHV--------------- 293 (484)
T ss_pred c-----------------------ccCCcCceeEEEeccCceEEEecCCCcEEEEEEecc--hhh---------------
Confidence 1 112 45678888888888889999998877533211 110
Q ss_pred cccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccc---eecCCCCe
Q 001202 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID---KELGSGDA 259 (1124)
Q Consensus 183 ~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~---~~~gh~~~ 259 (1124)
.. .+.+|...|..+.|+ +||+.++++.+|..+.+||....+ ....|..+
T Consensus 294 -----------------~~-~~~~H~qeVCgLkws----------~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aA 345 (484)
T KOG0305|consen 294 -----------------VS-TLQGHRQEVCGLKWS----------PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAA 345 (484)
T ss_pred -----------------hh-hhhcccceeeeeEEC----------CCCCeeccCCCccceEeccCCCccccEEEecccee
Confidence 00 144677888777777 899999999999999999985433 23789999
Q ss_pred E-EEEEcc-CCCEEEEE--ecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEE--EECCCcEEE
Q 001202 260 V-CASIAP-EQQILAVG--TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV--GWKSRGLTV 333 (1124)
Q Consensus 260 v-~va~sp-dg~lLAsG--s~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Las--gs~Dg~I~v 333 (1124)
| .++|+| +..+||+| +.|++|++||..+ +..+..+. ..+.|..|.|+|..+-|++ |..+..|.|
T Consensus 346 VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vd---------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 346 VKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARIDSVD---------TGSQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred eeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEecccc---------cCCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 9 999999 57789986 5799999999997 77776654 4577999999999976665 445678999
Q ss_pred EEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCC
Q 001202 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY 383 (1124)
Q Consensus 334 Wdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~ 383 (1124)
|+..+...+..+.+| ...|..++++|++ +.+++|. ++++|+.-+.
T Consensus 416 w~~ps~~~~~~l~gH-~~RVl~la~SPdg----~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 416 WKYPSMKLVAELLGH-TSRVLYLALSPDG----ETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EeccccceeeeecCC-cceeEEEEECCCC----CEEEEecccCcEEeccccCC
Confidence 999999999999999 7889999999998 7777766 8888876553
No 68
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=4.7e-16 Score=178.30 Aligned_cols=303 Identities=14% Similarity=0.152 Sum_probs=185.6
Q ss_pred CeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCc---EEEEEeCCCeEEEEEeeecCceeecCC
Q 001202 31 NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTK---LIAVVTSSLYLHIFKVQITEKSIQIGG 107 (1124)
Q Consensus 31 g~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~---~Lav~t~dg~l~i~~v~~~~~~~~~~~ 107 (1124)
+.++|.+....|.+||-.++ +...... .+.+.+.++.|=|+++ .+++|..||.|++|.+....-
T Consensus 25 ~~~vafGa~~~Iav~dp~k~-~i~t~l~------GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~------ 91 (764)
T KOG1063|consen 25 GGLVAFGAGPAIAVADPEKI-LIVTTLD------GHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL------ 91 (764)
T ss_pred cceEEecCCceEEEeCcccc-eeEEecc------CCccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe------
Confidence 34677777888999998633 2222221 1357789999999998 799999999999999983210
Q ss_pred CCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCcccc-----ceeeccCCCCccccccc
Q 001202 108 KQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYG-----AFELVHSSNDSSVAALS 182 (1124)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~-----~~~l~~~~~~~~~i~~i 182 (1124)
.....+.++...+.|+.-....+.+..+||.+.+ |+.+... ..++..+..-..++..+
T Consensus 92 ---------------~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~v--w~~~~~e~~~~~~~rf~~k~~ipLcL~~~ 154 (764)
T KOG1063|consen 92 ---------------IKIYTIQGHCKECVCVVARSSVMTCKAADGTVSV--WDKQQDEVFLLAVLRFEIKEAIPLCLAAL 154 (764)
T ss_pred ---------------EEEEeecCcceeEEEEEeeeeEEEeeccCceEEE--eecCCCceeeehheehhhhhHhhHHHhhh
Confidence 0111122223344454433333333457888877 4442221 11111111111122222
Q ss_pred cccCCCC--cccccCC-----------CCe-eecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecc
Q 001202 183 HHFPSNG--LASVDTS-----------GAF-VSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI 248 (1124)
Q Consensus 183 ~fs~~~q--l~s~~~~-----------~~~-~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~ 248 (1124)
+ +++ +...+.+ +.. ....+.+|.--|.+++|..... |.-++++++.|..|++|...
T Consensus 155 ~---~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~-------~~~~laS~SQD~yIRiW~i~ 224 (764)
T KOG1063|consen 155 K---NNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG-------DDLLLASSSQDRYIRIWRIV 224 (764)
T ss_pred c---cCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC-------CcEEEEecCCceEEEEEEEE
Confidence 2 111 1111111 111 1122345555555555554332 44567778889999999653
Q ss_pred ccc------------------------e----------ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCc-ee
Q 001202 249 KID------------------------K----------ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESAS-LI 292 (1124)
Q Consensus 249 ~~~------------------------~----------~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~-~~ 292 (1124)
-.. . ..||.+.| ++.|+|.+..|.+++.|.++.+|.-++... -.
T Consensus 225 ~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv 304 (764)
T KOG1063|consen 225 LGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWV 304 (764)
T ss_pred ecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEE
Confidence 111 0 04999999 999999999999999999999999876332 23
Q ss_pred EEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC---eeeEEeccCCcCceeeeEEcCCCCCCcceE
Q 001202 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (1124)
Q Consensus 293 ~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~---~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l 369 (1124)
....+-..| +..++-...-|+|++..+++-+.-|++.+|..... ...-.+.|| ...|.+++|+|.| +++
T Consensus 305 ~~vRlGe~g---g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH-~~~V~dv~W~psG----efl 376 (764)
T KOG1063|consen 305 DVVRLGEVG---GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH-VDGVKDVDWDPSG----EFL 376 (764)
T ss_pred EEEEeeccc---ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc-cccceeeeecCCC----CEE
Confidence 344443333 35677889999999999999999999999994332 122344566 8899999999999 888
Q ss_pred EEee---eEEEEeCC
Q 001202 370 MSGT---SMMQWDEY 381 (1124)
Q Consensus 370 ~sg~---~i~~W~~~ 381 (1124)
++.+ +.+++..-
T Consensus 377 Lsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 377 LSVSLDQTTRLFARW 391 (764)
T ss_pred EEeccccceeeeccc
Confidence 8766 56655443
No 69
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2e-18 Score=174.68 Aligned_cols=235 Identities=15% Similarity=0.184 Sum_probs=195.1
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCe
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGV 279 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~Dgt 279 (1124)
+..++++|..+.|+ -||++.+++++|.++++|+...+..+ .||...| .++.+.|...+|+|+.|..
T Consensus 13 l~~~qgaV~avryN----------~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~ 82 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYN----------VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKA 82 (307)
T ss_pred ecccccceEEEEEc----------cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCce
Confidence 45667888776666 78999999999999999999887654 7999999 9999999999999999999
Q ss_pred EEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC--eeeEEeccCCcCceeeeE
Q 001202 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPI 357 (1124)
Q Consensus 280 V~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~--~l~~tl~~h~~~~V~s~~ 357 (1124)
|.+||+++ ++..+.+. | |.+.|+.++|+.+...+++|+-|.++++||-.+. ++++.+... .+.|.++.
T Consensus 83 v~vwDV~T-Gkv~Rr~r----g----H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea-~D~V~Si~ 152 (307)
T KOG0316|consen 83 VQVWDVNT-GKVDRRFR----G----HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA-KDGVSSID 152 (307)
T ss_pred EEEEEccc-Ceeeeecc----c----ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh-cCceeEEE
Confidence 99999999 99899888 6 9999999999999999999999999999998654 567777665 67788887
Q ss_pred EcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCC
Q 001202 358 VKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (1124)
Q Consensus 358 ~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~ 433 (1124)
... ..++.|+ +.+.+++..+++..-.-+|+-.-+.|+. +...+.++.|+++++-|-.+|+-
T Consensus 153 v~~------heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl--------- 217 (307)
T KOG0316|consen 153 VAE------HEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL--------- 217 (307)
T ss_pred ecc------cEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHH---------
Confidence 643 3456666 9999999999988777776555566666 88889999999999877544443
Q ss_pred CccceeeecccceeeccCCCce--EEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 434 TDELKILHLNLPVSYISQNWPV--QHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 434 ~~~~~w~~~~~p~~~~~~~~~I--~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
...|.+|...= ...+++....++++|++||.+ +||+....
T Consensus 218 -----------L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 218 -----------LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred -----------HHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence 66788886542 235778888999999999999 99997654
No 70
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.1e-18 Score=202.92 Aligned_cols=202 Identities=15% Similarity=0.212 Sum_probs=141.8
Q ss_pred ccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee--cCCCCeE-EEEEcc-CCCEEEEEecCC
Q 001202 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAP-EQQILAVGTRRG 278 (1124)
Q Consensus 203 ~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~--~gh~~~v-~va~sp-dg~lLAsGs~Dg 278 (1124)
.+.+|...|-++.|| ...++++++-|.|+++|+....+++ ..|.+.| ||+|+| |.+++++||-||
T Consensus 364 ef~GHt~DILDlSWS-----------Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~ 432 (712)
T KOG0283|consen 364 EFKGHTADILDLSWS-----------KNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDG 432 (712)
T ss_pred hhhccchhheecccc-----------cCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccccc
Confidence 356888999998887 3457888899999999998877765 6799999 999999 689999999999
Q ss_pred eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEE
Q 001202 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (1124)
Q Consensus 279 tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~ 358 (1124)
.||||++.+ .+... ..+ -..-|++++|+|||+..++|+.+|.+++|++.+.++.....-+ .
T Consensus 433 KvRiWsI~d-~~Vv~---W~D------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~---------~ 493 (712)
T KOG0283|consen 433 KVRLWSISD-KKVVD---WND------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR---------L 493 (712)
T ss_pred ceEEeecCc-CeeEe---ehh------hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe---------e
Confidence 999999986 33222 111 2366999999999999999999999999999998876554321 0
Q ss_pred cCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceE--EEEeccc--eEEeeccCCceeeeEeeecCCeEEEeecCCC
Q 001202 359 KPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERV--LIFSFGK--CCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (1124)
Q Consensus 359 sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v--~~~s~~k--~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~ 434 (1124)
++. +. ..++ +| +++.++. .++-.+.|..|++++..+.+-
T Consensus 494 ~~~-----Kk--------------------~~~~--rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l---------- 536 (712)
T KOG0283|consen 494 HNK-----KK--------------------KQGK--RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL---------- 536 (712)
T ss_pred ccC-----cc--------------------ccCc--eeeeeEecCCCCCeEEEecCCCceEEEeccchhh----------
Confidence 110 00 0011 11 1122211 123334566777766533221
Q ss_pred ccceeeecccceeeccC---CCceEEEEEccCCCEEEEEcCCCeE-EEEcCC
Q 001202 435 DELKILHLNLPVSYISQ---NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 435 ~~~~w~~~~~p~~~~~~---~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s 482 (1124)
...|.|+ +.. ...+|+.||++|++|++|..| +|+...
T Consensus 537 ----------v~KfKG~~n~~SQ-~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 537 ----------VHKFKGFRNTSSQ-ISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ----------hhhhcccccCCcc-eeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 2333332 222 357899999999999999999 999854
No 71
>PTZ00420 coronin; Provisional
Probab=99.81 E-value=2.2e-17 Score=197.83 Aligned_cols=216 Identities=14% Similarity=0.140 Sum_probs=161.9
Q ss_pred cCCceEeeeccccce---ecCCCCeE-EEEEccC-CCEEEEEecCCeEEEEEcCCCCc-------eeEEEeeccCCCCCC
Q 001202 238 SKKGLKLAEFIKIDK---ELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESAS-------LIRTVSLYDWGYSMD 305 (1124)
Q Consensus 238 ~d~~i~~wd~~~~~~---~~gh~~~v-~va~spd-g~lLAsGs~DgtV~vwd~~~~~~-------~~~~l~~~~~g~~~~ 305 (1124)
.++.+++|+...... +.+|.+.| +++|+|+ +.+||+|+.||+|+||++.+.+. ....+. +
T Consensus 52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~----g---- 123 (568)
T PTZ00420 52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK----G---- 123 (568)
T ss_pred ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee----c----
Confidence 355678887544322 37899999 9999997 78999999999999999976322 112233 4
Q ss_pred CCCCeEEEEECCCCCE-EEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCC
Q 001202 306 DTGPVSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (1124)
Q Consensus 306 h~g~V~~lawSPDG~~-Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~ 381 (1124)
|.+.|.+++|+|++.. ||+|+.|++|+|||+.+++...++. | ...|.+++|+|++ ..+++++ ++++|++.
T Consensus 124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~-~~~V~SlswspdG----~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-M-PKKLSSLKWNIKG----NLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-c-CCcEEEEEECCCC----CEEEEEecCCEEEEEECC
Confidence 9999999999999975 5799999999999999988777775 3 4679999999998 7777665 89999999
Q ss_pred CCeEEEEecCCcceE-----EE--Eec-cceEEeeccCC----ceeeeEeeecCCeEEEeecCCCccceeeecccceeec
Q 001202 382 GYRLYAIEEGSSERV-----LI--FSF-GKCCLNRGVSG----MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (1124)
Q Consensus 382 ~~~l~~~~~~~~~~v-----~~--~s~-~k~~~s~s~d~----~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~ 449 (1124)
++++.....+|.+.+ +. ++. ++.+++++.|+ ++++|++......+.. ....
T Consensus 198 sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~-----------------~~ld 260 (568)
T PTZ00420 198 KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT-----------------MSID 260 (568)
T ss_pred CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE-----------------EEec
Confidence 999988888887643 21 223 56788877764 6999998754431110 0112
Q ss_pred cCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 450 ~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
.+.+++.....+++|.++++|+.|+.+ +|++..+.
T Consensus 261 ~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 261 NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 233444444456679999999999999 99998764
No 72
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=6.4e-18 Score=177.48 Aligned_cols=324 Identities=15% Similarity=0.127 Sum_probs=189.0
Q ss_pred EEEEecCCCceeEEEEeeChHHHhhh-cceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEE
Q 001202 42 IELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISL 120 (1124)
Q Consensus 42 l~IW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~ 120 (1124)
..=|+..||... +.-....+..| +.+++++||.||+.||+++.|+.|++|++..-.. ..|.
T Consensus 63 ~~~~k~~q~~f~---Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----~eHr----------- 124 (420)
T KOG2096|consen 63 NDQWKAKQPTFV---HPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----KEHR----------- 124 (420)
T ss_pred hhhhcccCCCcc---cchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----hhhh-----------
Confidence 556766554321 11222334444 5678999999999999999999999999964211 1110
Q ss_pred EeeeeeecccccceEEEEeecCCeEEEEecCC-cEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCe
Q 001202 121 VLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG-SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAF 199 (1124)
Q Consensus 121 ~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg-~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~ 199 (1124)
.++- .+..+..+...+++|-..+++.+.+| .++++..+..+.+...+ +...+ |+-
T Consensus 125 ~~R~--nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~-----~~v~~-------D~~---------- 180 (420)
T KOG2096|consen 125 CIRQ--NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSH-----HFVHI-------DNL---------- 180 (420)
T ss_pred Hhhc--cccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCc-----ccccc-------ccc----------
Confidence 0001 11111223446677777888888766 56665544433333211 00000 000
Q ss_pred eecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccceecCCC-----CeEEEEEccCCCEEEEE
Q 001202 200 VSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSG-----DAVCASIAPEQQILAVG 274 (1124)
Q Consensus 200 ~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~-----~~v~va~spdg~lLAsG 274 (1124)
..-..++..|.+ +-+..+++++++++.|.+|-+|+.. ++.+ +|- .-..+++||+|++||++
T Consensus 181 --~f~~kh~v~~i~----------iGiA~~~k~imsas~dt~i~lw~lk-Gq~L-~~idtnq~~n~~aavSP~GRFia~~ 246 (420)
T KOG2096|consen 181 --EFERKHQVDIIN----------IGIAGNAKYIMSASLDTKICLWDLK-GQLL-QSIDTNQSSNYDAAVSPDGRFIAVS 246 (420)
T ss_pred --ccchhcccceEE----------EeecCCceEEEEecCCCcEEEEecC-Ccee-eeeccccccccceeeCCCCcEEEEe
Confidence 000123344433 2223678889999999999999987 5443 221 22267999999999999
Q ss_pred ecCCeEEEEEcCC--CC---ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCC
Q 001202 275 TRRGVVELYDLAE--SA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS 349 (1124)
Q Consensus 275 s~DgtV~vwd~~~--~~---~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~ 349 (1124)
+---.|+||.+-- .+ +..+.+.+. | |...|...+|||+...+++.+.||+|+|||+.-.- ..
T Consensus 247 gFTpDVkVwE~~f~kdG~fqev~rvf~Lk--G----H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY---~~---- 313 (420)
T KOG2096|consen 247 GFTPDVKVWEPIFTKDGTFQEVKRVFSLK--G----HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY---EA---- 313 (420)
T ss_pred cCCCCceEEEEEeccCcchhhhhhhheec--c----chhheeeeeeCCCcceeEEEecCCcEEEeeccceE---ec----
Confidence 9999999999632 12 122222221 5 99999999999999999999999999999985321 00
Q ss_pred cCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEe
Q 001202 350 LSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVV 429 (1124)
Q Consensus 350 ~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~ 429 (1124)
+.+. ..+..|+ .-. ...|+... -+.++|...++..+...+++++....|++
T Consensus 314 -----------~qDp--k~Lk~g~-~pl-~aag~~p~---------RL~lsP~g~~lA~s~gs~l~~~~se~g~~----- 364 (420)
T KOG2096|consen 314 -----------GQDP--KILKEGS-APL-HAAGSEPV---------RLELSPSGDSLAVSFGSDLKVFASEDGKD----- 364 (420)
T ss_pred -----------CCCc--hHhhcCC-cch-hhcCCCce---------EEEeCCCCcEEEeecCCceEEEEcccCcc-----
Confidence 0000 1111111 000 00011111 13344422222333334566655555555
Q ss_pred ecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeEE
Q 001202 430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLIL 477 (1124)
Q Consensus 430 ~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~vl 477 (1124)
+|.--..|...|.+++|++||+++|++|++-..+
T Consensus 365 --------------~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv 398 (420)
T KOG2096|consen 365 --------------YPELEDIHSTTISSISYSSDGKYIATCGDRYVRV 398 (420)
T ss_pred --------------chhHHHhhcCceeeEEecCCCcEEeeecceeeee
Confidence 2443446888999999999999999999765543
No 73
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.81 E-value=2.2e-18 Score=190.80 Aligned_cols=289 Identities=9% Similarity=0.087 Sum_probs=191.8
Q ss_pred eeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEe
Q 001202 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL 149 (1124)
Q Consensus 70 ~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t 149 (1124)
+.++++-|.|.++++|+.|.++++||.+.-...+.. ++.-.+...+...+...++.++.|++.+
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~----------------fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS----------------FRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEecccccccchh----------------hhccCcccccccceeeecCCCCeEEEEe
Confidence 457899999999999999999999999743221110 0110112222223334445678888888
Q ss_pred cCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecC
Q 001202 150 SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN 229 (1124)
Q Consensus 150 ~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~d 229 (1124)
.....++++-||-....+ .-+.|... ......+|...+++..|+|. +
T Consensus 234 g~aqakl~DRdG~~~~e~-----------------~KGDQYI~-------Dm~nTKGHia~lt~g~whP~---------~ 280 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEF-----------------SKGDQYIR-------DMYNTKGHIAELTCGCWHPD---------N 280 (641)
T ss_pred cCcceeEEccCCceeeee-----------------eccchhhh-------hhhccCCceeeeeccccccC---------c
Confidence 777777777666443222 11111000 00012356677777777764 2
Q ss_pred CcEEEEEecCCceEeeecccccee---------cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeecc
Q 001202 230 GQLMSCSVSKKGLKLAEFIKIDKE---------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1124)
Q Consensus 230 G~~~~~~~~d~~i~~wd~~~~~~~---------~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~ 299 (1124)
...+++++.|+++++|++.+.+.. .|..-.+ .++|||||.+||.||.||.|.+|+... ......+...
T Consensus 281 k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~-~~v~p~~~vk- 358 (641)
T KOG0772|consen 281 KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGS-RTVRPVMKVK- 358 (641)
T ss_pred ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCC-cccccceEee-
Confidence 456788899999999998765421 1222234 899999999999999999999999754 2111122211
Q ss_pred CCCCCCCCC--CeEEEEECCCCCEEEEEECCCcEEEEEcCCC-eeeEEeccC-CcCceeeeEEcCCCCCCcceEEEee--
Q 001202 300 WGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT-- 373 (1124)
Q Consensus 300 ~g~~~~h~g--~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~-~l~~tl~~h-~~~~V~s~~~sp~~~~~~~~l~sg~-- 373 (1124)
.+|.+ .|+||+||+||++|+|-+.|++++|||+... +++.+..+- ..-.-+.++|||+. +.+++|.
T Consensus 359 ----~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~----kli~TGtS~ 430 (641)
T KOG0772|consen 359 ----DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD----KLILTGTSA 430 (641)
T ss_pred ----eccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc----eEEEecccc
Confidence 24777 8999999999999999999999999999653 444444441 12345778999998 8888875
Q ss_pred -------eEEEEeCCCCeEEEEecCCcceEE--EEec-cceEEeeccCCceeee
Q 001202 374 -------SMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYAR 417 (1124)
Q Consensus 374 -------~i~~W~~~~~~l~~~~~~~~~~v~--~~s~-~k~~~s~s~d~~v~~w 417 (1124)
+..+++..+.+.+....-....|+ .+.+ -..+..++.||+++++
T Consensus 431 ~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 431 PNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred cCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 466788888777766544455553 3444 6677888888888764
No 74
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=5.5e-18 Score=174.12 Aligned_cols=254 Identities=13% Similarity=0.181 Sum_probs=176.5
Q ss_pred eEEEEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHh-hhcceeEEEEec-CCcEEEEEeCCCeEEEEEeeec
Q 001202 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQ-REGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQIT 99 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~-~~G~~~~v~wSP-Dg~~Lav~t~dg~l~i~~v~~~ 99 (1124)
+-|+++.||..+|+++ +.++.+|++. +... +...... +.+.+..++|.| ....+|+++.|..+++||+..+
T Consensus 24 ~Sv~wn~~g~~lasgs~dktv~v~n~e-~~r~-----~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 24 HSVAWNCDGTKLASGSFDKTVSVWNLE-RDRF-----RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred eEEEEcccCceeeecccCCceEEEEec-chhh-----hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 4488999999999976 5689999997 3311 1111111 234677888987 5568999999999999999876
Q ss_pred CceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCcccc
Q 001202 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (1124)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i 179 (1124)
+...... ..+ .....++.|++++++++..|..|..++ .......
T Consensus 98 k~~~~i~---------------------~~~-eni~i~wsp~g~~~~~~~kdD~it~id--~r~~~~~------------ 141 (313)
T KOG1407|consen 98 KCTARIE---------------------TKG-ENINITWSPDGEYIAVGNKDDRITFID--ARTYKIV------------ 141 (313)
T ss_pred cEEEEee---------------------ccC-cceEEEEcCCCCEEEEecCcccEEEEE--eccccee------------
Confidence 4321111 111 112345678889999999888776653 2111110
Q ss_pred ccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce---ecCC
Q 001202 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGS 256 (1124)
Q Consensus 180 ~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~---~~gh 256 (1124)
.-.+....+..+.|+ .++.+++.+..-+++.+......+. +..|
T Consensus 142 -----------------------~~~~~~~e~ne~~w~----------~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH 188 (313)
T KOG1407|consen 142 -----------------------NEEQFKFEVNEISWN----------NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAH 188 (313)
T ss_pred -----------------------ehhcccceeeeeeec----------CCCCEEEEecCCceEEEEeccccccccccccC
Confidence 011223445555555 3444444444555666544433322 2577
Q ss_pred CCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEE
Q 001202 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1124)
Q Consensus 257 ~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWd 335 (1124)
.... |+.|+|+|+++|+|++|..|.+||++. --+.+.+.. +.-||+.++||.||++||+|++|..|-|=+
T Consensus 189 ~snCicI~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isR--------ldwpVRTlSFS~dg~~lASaSEDh~IDIA~ 259 (313)
T KOG1407|consen 189 PSNCICIEFDPDGRYFATGSADALVSLWDVDE-LICERCISR--------LDWPVRTLSFSHDGRMLASASEDHFIDIAE 259 (313)
T ss_pred CcceEEEEECCCCceEeeccccceeeccChhH-hhhheeecc--------ccCceEEEEeccCcceeeccCccceEEeEe
Confidence 7666 999999999999999999999999987 777888874 445599999999999999999999999999
Q ss_pred cCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 336 v~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
+.+|..+..+.- .++..+++|+|..
T Consensus 260 vetGd~~~eI~~--~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 260 VETGDRVWEIPC--EGPTFTVAWHPKR 284 (313)
T ss_pred cccCCeEEEeec--cCCceeEEecCCC
Confidence 999988877754 5677888888875
No 75
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.3e-15 Score=174.79 Aligned_cols=409 Identities=14% Similarity=0.184 Sum_probs=247.7
Q ss_pred CCceEEEEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeee
Q 001202 20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (1124)
Q Consensus 20 ~~~~iv~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~ 98 (1124)
++--.++||.+.+.||++. ++.|.||+.+ +.=.+- +... ..+.+.+..++|+ +|.+|++...+|.|.-||+..
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~-~~w~~~---~vi~-g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLS-NNWFLE---PVIH-GPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccC-CCceee---EEEe-cCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc
Confidence 3344478899888788764 6789999996 421111 1100 1234667789999 677888889999999999987
Q ss_pred cCceeecCCCCCCCcceeeEEEEeeeeeecccccceE--EEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCc
Q 001202 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (1124)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~ 176 (1124)
.+..... +...+.+ .|+.+.++.+++|+.||.+..++-..+... +
T Consensus 100 lk~~~~~-----------------------d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~-~--------- 146 (691)
T KOG2048|consen 100 LKQKYNI-----------------------DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT-Y--------- 146 (691)
T ss_pred CceeEEe-----------------------cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE-E---------
Confidence 6432111 1111223 244556788999999995554432222110 1
Q ss_pred cccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccceec--
Q 001202 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL-- 254 (1124)
Q Consensus 177 ~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~-- 254 (1124)
...+...++.|-++.|+ ++|..++.|+.|+.|++||..++....
T Consensus 147 ------------------------~r~l~rq~sRvLslsw~----------~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~ 192 (691)
T KOG2048|consen 147 ------------------------KRSLMRQKSRVLSLSWN----------PTGTKIAGGSIDGVIRIWDVKSGQTLHII 192 (691)
T ss_pred ------------------------EeecccccceEEEEEec----------CCccEEEecccCceEEEEEcCCCceEEEe
Confidence 01233446778776666 788888999999999999988765431
Q ss_pred -----CCC--Ce--E-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEE
Q 001202 255 -----GSG--DA--V-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (1124)
Q Consensus 255 -----gh~--~~--v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Las 324 (1124)
+-. +. | +|.+= ....||+|...|+|++||... +.+++..+ - |.+-|.|++-++++.++++
T Consensus 193 ~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~-gTLiqS~~----~----h~adVl~Lav~~~~d~vfs 262 (691)
T KOG2048|consen 193 TMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIF-GTLIQSHS----C----HDADVLALAVADNEDRVFS 262 (691)
T ss_pred eecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccC-cchhhhhh----h----hhcceeEEEEcCCCCeEEE
Confidence 111 22 2 44444 456799999999999999988 77776655 2 8888999999999999999
Q ss_pred EECCCcEEEEEcCCCee---eEEeccCCcCceeeeEEcCCCC---------------C------------CcceEEEee-
Q 001202 325 GWKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQD---------------C------------KYEPLMSGT- 373 (1124)
Q Consensus 325 gs~Dg~I~vWdv~~~~l---~~tl~~h~~~~V~s~~~sp~~~---------------~------------~~~~l~sg~- 373 (1124)
++.|+.|.-+...++.- ....+.+|...|.+++..++.- + .....+++.
T Consensus 263 aGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~ 342 (691)
T KOG2048|consen 263 AGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP 342 (691)
T ss_pred ccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCc
Confidence 99999999998877633 2233334456666666543310 0 001122222
Q ss_pred ---eEEEEeCCCCeEEEEecC----Ccc--e-----------E--EEEec-cceEEeeccCCceeeeEeeecCCeEEEee
Q 001202 374 ---SMMQWDEYGYRLYAIEEG----SSE--R-----------V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (1124)
Q Consensus 374 ---~i~~W~~~~~~l~~~~~~----~~~--~-----------v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~ 430 (1124)
..+.|...+..+|..... +.+ . | .++++ |..++- +.....+++.+.... .+-+..
T Consensus 343 ~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~-st~~~~~iy~L~~~~-~vk~~~ 420 (691)
T KOG2048|consen 343 ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAI-STVSRTKIYRLQPDP-NVKVIN 420 (691)
T ss_pred cceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEE-eeccceEEEEeccCc-ceeEEE
Confidence 556788777777766443 111 1 1 33344 222222 222233333332211 111111
Q ss_pred cCC------------------------Cccceeeecc--cce-------eeccCCCceEEEEEccCCCEEEEEcCCCeE-
Q 001202 431 SED------------------------TDELKILHLN--LPV-------SYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (1124)
Q Consensus 431 ~~~------------------------~~~~~w~~~~--~p~-------~~~~~~~~I~~va~SpdG~~lAvag~dG~v- 476 (1124)
-++ .....|+.++ .|. .-.+...+|..++.||||+|+|+++.+|.|
T Consensus 421 v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~ 500 (691)
T KOG2048|consen 421 VDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIF 500 (691)
T ss_pred eccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEE
Confidence 000 0111232221 110 111345679999999999999999999999
Q ss_pred EEEcCCCcEEEecCcCceeeeEEEEEE-ecCCEEEEEEE
Q 001202 477 LYDIRQKKWRVFGDITQEQKIQSKGLL-WLGKIIVVCNY 514 (1124)
Q Consensus 477 lwd~~sg~wk~f~~~~~e~~~~v~gl~-W~~~~liv~~~ 514 (1124)
+|++.+++-+.+..... ..++..++. |..+.++++..
T Consensus 501 v~nl~~~~~~~l~~rln-~~vTa~~~~~~~~~~lvvats 538 (691)
T KOG2048|consen 501 VYNLETLESHLLKVRLN-IDVTAAAFSPFVRNRLVVATS 538 (691)
T ss_pred EEEcccceeecchhccC-cceeeeeccccccCcEEEEec
Confidence 99999998887764333 223333444 77777887754
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=8.9e-18 Score=186.16 Aligned_cols=281 Identities=13% Similarity=0.179 Sum_probs=200.7
Q ss_pred CCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccceecCCCCeE-EEEEccCCCEEEEEecCCeEEEEE
Q 001202 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYD 284 (1124)
Q Consensus 206 ~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd 284 (1124)
.....|.++.|+|.-..-+++++.-+.-+..+....+. +...--.+.+ ++.|-.||+++|.|...|.|+|||
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~-------k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD 96 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVR-------KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFD 96 (487)
T ss_pred cccCcceeEecCCCCCCceEEecccEEEEEecchhhhh-------hhHHhhccceeEEEeecCCeEEEccCCcCcEEEec
Confidence 45578899999987655555554444433222111100 0011224566 899999999999999999999999
Q ss_pred cCCCCceeEEEeeccCCCCCCCCCCeEEEEECCC-CCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCC
Q 001202 285 LAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 363 (1124)
Q Consensus 285 ~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPD-G~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~ 363 (1124)
+.+ ...++.+. + |+.+|..+.|+|+ ++.+++|++|+.+++||+.++.....+.+| ++.|.+.+++|..
T Consensus 97 ~k~-r~iLR~~~----a----h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h-tDYVR~g~~~~~~- 165 (487)
T KOG0310|consen 97 MKS-RVILRQLY----A----HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGH-TDYVRCGDISPAN- 165 (487)
T ss_pred ccc-HHHHHHHh----h----ccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCC-cceeEeeccccCC-
Confidence 655 44555555 4 9999999999995 458888999999999999999876678887 6667666666543
Q ss_pred CCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecc
Q 001202 364 CKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (1124)
Q Consensus 364 ~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~ 443 (1124)
. ..++|||+||++++||......
T Consensus 166 ---~-----------------------------------hivvtGsYDg~vrl~DtR~~~~------------------- 188 (487)
T KOG0310|consen 166 ---D-----------------------------------HIVVTGSYDGKVRLWDTRSLTS------------------- 188 (487)
T ss_pred ---C-----------------------------------eEEEecCCCceEEEEEeccCCc-------------------
Confidence 1 1347899999999999876544
Q ss_pred cceeeccCCCceEEEEEccCCCEEEEEcCCCeEEEEcCCCcEEEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEE
Q 001202 444 LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYEL 523 (1124)
Q Consensus 444 ~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~vlwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~el 523 (1124)
+..-..|.-||..+.+=|.|..+|+||....-+||+.+|.-.+.....|.+.++|..+.-.+.-|++++. +..+
T Consensus 189 -~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL-----D~~V 262 (487)
T KOG0310|consen 189 -RVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL-----DRHV 262 (487)
T ss_pred -eeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccc-----ccce
Confidence 2334578889999999999999999998776699999887554333335444444444445678888744 4489
Q ss_pred EEeeCCCCCCcceEEEeecCCccEEEEeeC--CEEEEEEcCCeEEEEEE
Q 001202 524 LFYPRYHLDQSSLLCRKSLLAKPIVMDVYE--DYILVTYRPFDVHIFHV 570 (1124)
Q Consensus 524 rly~~~~ld~~~~l~~~~l~s~~l~l~~~~--~~llv~~~d~~i~l~~~ 570 (1124)
++|+. .+..+.+...+|++++.+.... ..++++..||.+.+=+.
T Consensus 263 KVfd~---t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 263 KVFDT---TNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred EEEEc---cceEEEEeeecccceeeEEecCCCceEEEecccceeeeehh
Confidence 99985 4557888999999998887644 55777777776555433
No 77
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=9.6e-18 Score=176.19 Aligned_cols=278 Identities=15% Similarity=0.187 Sum_probs=184.8
Q ss_pred eEEEEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEe-CCCeEEEEEeeecC
Q 001202 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQITE 100 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t-~dg~l~i~~v~~~~ 100 (1124)
..++||.||+.||++. |++|+||+++ . .....+ |....--++|+-+.|.|+||.+.+++.. ..+.|++|.+....
T Consensus 90 t~~~FsSdGK~lat~~~Dr~Ir~w~~~-D-F~~~eH-r~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~ 166 (420)
T KOG2096|consen 90 TDVAFSSDGKKLATISGDRSIRLWDVR-D-FENKEH-RCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKT 166 (420)
T ss_pred eeeEEcCCCceeEEEeCCceEEEEecc-h-hhhhhh-hHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence 4489999999999965 5689999996 2 211111 2222222468889999999998877755 44679999986543
Q ss_pred ceeecCCCCCCCcceeeEEEE---eeeeeecccccceE--EEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCC
Q 001202 101 KSIQIGGKQPSGLFFIKISLV---LNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSND 175 (1124)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v--~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~ 175 (1124)
..- .+.+.+-+. +..+ +...+ ..++..+..++.++.|..|.+|+..|+..+..
T Consensus 167 dG~---------~~~~~v~~D~~~f~~k-----h~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~i-------- 224 (420)
T KOG2096|consen 167 DGS---------GSHHFVHIDNLEFERK-----HQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSI-------- 224 (420)
T ss_pred cCC---------CCcccccccccccchh-----cccceEEEeecCCceEEEEecCCCcEEEEecCCceeeee--------
Confidence 211 111111111 1111 11122 23445567888888888887744333221111
Q ss_pred ccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccc----
Q 001202 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID---- 251 (1124)
Q Consensus 176 ~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~---- 251 (1124)
.-+...+.-++++|||+++++++-.-.+++|...-.+
T Consensus 225 ---------------------------------------dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~f 265 (420)
T KOG2096|consen 225 ---------------------------------------DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTF 265 (420)
T ss_pred ---------------------------------------ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcch
Confidence 1111224568889999999998877789999865221
Q ss_pred -------eecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCC------CceeEEEeeccCCCCCCCCCCeEEEEECC
Q 001202 252 -------KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES------ASLIRTVSLYDWGYSMDDTGPVSCIAWTP 317 (1124)
Q Consensus 252 -------~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~------~~~~~~l~~~~~g~~~~h~g~V~~lawSP 317 (1124)
.+.||..+| ..+|||+.+.+++.+.||++||||++-. ...+++.+. +...+-..++ .++.||
T Consensus 266 qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~---pl~aag~~p~-RL~lsP 341 (420)
T KOG2096|consen 266 QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSA---PLHAAGSEPV-RLELSP 341 (420)
T ss_pred hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCc---chhhcCCCce-EEEeCC
Confidence 127999999 9999999999999999999999998641 112222210 0001112344 799999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee
Q 001202 318 DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1124)
Q Consensus 318 DG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~ 373 (1124)
.|+.||.+.. .+++++....++..-+++..+...|++++|+++| .++++++
T Consensus 342 ~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g----~~~atcG 392 (420)
T KOG2096|consen 342 SGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDG----KYIATCG 392 (420)
T ss_pred CCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCC----cEEeeec
Confidence 9999998876 4899999998887778877447789999999998 7887754
No 78
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.79 E-value=9.5e-18 Score=201.88 Aligned_cols=305 Identities=16% Similarity=0.158 Sum_probs=211.1
Q ss_pred cceeEEEEecCCcEEEEEe--CCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEE--eecCC
Q 001202 68 GENLQAVWSPDTKLIAVVT--SSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNK 143 (1124)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t--~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~d~~ 143 (1124)
..+.++..+|||..+|+++ .||.++||+.+.-.......... .+........+.++|.|+ ++|+.
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~-----------l~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNEN-----------LPKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcc-----------cchhheeeccccCceeEEEECCCCC
Confidence 3467999999999999999 89999999986422110000000 011122344567788885 67889
Q ss_pred eEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceE
Q 001202 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1124)
Q Consensus 144 ~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~ 223 (1124)
++++|++|..|.+|.... .+... .|+
T Consensus 83 ~lAsGSDD~~v~iW~~~~--~~~~~--------------~fg-------------------------------------- 108 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAE--IGSGT--------------VFG-------------------------------------- 108 (942)
T ss_pred eEeeccCcceEEEeeecc--cCCcc--------------ccc--------------------------------------
Confidence 999999999887753332 11000 000
Q ss_pred EEEecCCcEEEEEecCCceEeeeccccceecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCC
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~ 302 (1124)
+.| .-..+.-|.... .+.+|..-| .+.|+|++.++|+++.|++|.||+..+ ...+.++. |
T Consensus 109 ----s~g-------~~~~vE~wk~~~--~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t-F~~~~vl~----~- 169 (942)
T KOG0973|consen 109 ----STG-------GAKNVESWKVVS--ILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT-FELLKVLR----G- 169 (942)
T ss_pred ----ccc-------cccccceeeEEE--EEecCCCccceeccCCCccEEEEecccceEEEEcccc-ceeeeeee----c-
Confidence 000 011122233221 136788888 999999999999999999999999988 57777777 6
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccC-----CcCceeeeEEcCCCCCCcceEEEee----
Q 001202 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-----SLSSISSPIVKPNQDCKYEPLMSGT---- 373 (1124)
Q Consensus 303 ~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h-----~~~~V~s~~~sp~~~~~~~~l~sg~---- 373 (1124)
|.+.|..+.|.|-|++|||-+.|++|+||.+..-.+.+++.++ +...+..+.||||| +++++.-
T Consensus 170 ---H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG----~~las~nA~n~ 242 (942)
T KOG0973|consen 170 ---HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG----HHLASPNAVNG 242 (942)
T ss_pred ---ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc----CeecchhhccC
Confidence 9999999999999999999999999999998876666666553 13346778899999 7776532
Q ss_pred ---eEEEEeCCCCeEEEEecCCcceE--EEEec------cc------------eEEeeccCCceeeeEeeecCCeEEEee
Q 001202 374 ---SMMQWDEYGYRLYAIEEGSSERV--LIFSF------GK------------CCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (1124)
Q Consensus 374 ---~i~~W~~~~~~l~~~~~~~~~~v--~~~s~------~k------------~~~s~s~d~~v~~w~l~~~~~~l~l~~ 430 (1124)
++.+-.-++.+.-...-||...+ +.|.+ .+ .+++|+.|+++.+|.... .|
T Consensus 243 ~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~--~R----- 315 (942)
T KOG0973|consen 243 GKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL--PR----- 315 (942)
T ss_pred CcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC--CC-----
Confidence 44555555555445555777665 55555 22 467888999999998522 21
Q ss_pred cCCCccceeeecccce--eeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 431 SEDTDELKILHLNLPV--SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 431 ~~~~~~~~w~~~~~p~--~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
|. ...-.+.+|..++|||||..|.+++.||++ +.....+.
T Consensus 316 --------------Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 316 --------------PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred --------------chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 21 111235679999999999999999999999 88876543
No 79
>PTZ00421 coronin; Provisional
Probab=99.79 E-value=3e-17 Score=195.80 Aligned_cols=198 Identities=13% Similarity=0.175 Sum_probs=152.2
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccc----------eecCCCCeE-EEEEccCC-CEE
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----------KELGSGDAV-CASIAPEQ-QIL 271 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~----------~~~gh~~~v-~va~spdg-~lL 271 (1124)
+.+|...|.++.|+|. |++++++++.|+++++|+..+.. .+.+|...| +++|+|++ .+|
T Consensus 71 l~GH~~~V~~v~fsP~---------d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPF---------DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVL 141 (493)
T ss_pred EeCCCCCEEEEEEcCC---------CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEE
Confidence 4577888988877741 78889999999999999986431 236899999 99999985 699
Q ss_pred EEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcC
Q 001202 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS 351 (1124)
Q Consensus 272 AsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~ 351 (1124)
|+|+.||+|+|||+.+ +.....+. + |.+.|.+++|+|||..||+|+.||+|+|||+.++..+.++.+|...
T Consensus 142 aSgs~DgtVrIWDl~t-g~~~~~l~----~----h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 142 ASAGADMVVNVWDVER-GKAVEVIK----C----HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred EEEeCCCEEEEEECCC-CeEEEEEc----C----CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence 9999999999999987 66666665 4 8999999999999999999999999999999999989999888444
Q ss_pred ceeeeEEcCCCCCCcceEEE-ee------eEEEEeCCCCe-EEEEecCC-cceE--EEEec-cceEEeec-cCCceeeeE
Q 001202 352 SISSPIVKPNQDCKYEPLMS-GT------SMMQWDEYGYR-LYAIEEGS-SERV--LIFSF-GKCCLNRG-VSGMTYARQ 418 (1124)
Q Consensus 352 ~V~s~~~sp~~~~~~~~l~s-g~------~i~~W~~~~~~-l~~~~~~~-~~~v--~~~s~-~k~~~s~s-~d~~v~~w~ 418 (1124)
.+..+.|.+++ ..+++ |. .+++||..... .+.....+ ...+ ..+++ ++.+++++ .|+.+++|+
T Consensus 213 ~~~~~~w~~~~----~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwd 288 (493)
T PTZ00421 213 KSQRCLWAKRK----DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFE 288 (493)
T ss_pred cceEEEEcCCC----CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEE
Confidence 45567788776 45544 31 68999997643 33332222 2223 33455 66666666 599999999
Q ss_pred eeecC
Q 001202 419 VIYGE 423 (1124)
Q Consensus 419 l~~~~ 423 (1124)
+..+.
T Consensus 289 l~~~~ 293 (493)
T PTZ00421 289 LMNER 293 (493)
T ss_pred eeCCc
Confidence 87654
No 80
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.79 E-value=4.9e-16 Score=172.05 Aligned_cols=399 Identities=16% Similarity=0.167 Sum_probs=237.8
Q ss_pred EEEeeCC-eEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhh--hcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCc
Q 001202 25 IYFKVNN-GLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQR--EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1124)
Q Consensus 25 v~fS~dg-~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~--~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~ 101 (1124)
..|-|-+ .++++.+.+.++.|+.+ .+... . | ..-+++ .-.+.+++|.|+|.. +++.++|.|.||+..+..
T Consensus 206 a~FHPtd~nliit~Gk~H~~Fw~~~-~~~l~-k--~-~~~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~- 278 (626)
T KOG2106|consen 206 ATFHPTDPNLIITCGKGHLYFWTLR-GGSLV-K--R-QGIFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSKGTNR- 278 (626)
T ss_pred EEeccCCCcEEEEeCCceEEEEEcc-CCceE-E--E-eeccccccceEEEEEEEcCCCCE-EeecCCceEEEEeCCCce-
Confidence 5788876 48888999999999986 33221 1 1 112221 245789999999864 789999999999985321
Q ss_pred eeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCC-eEEEEecCCcEEEEeccCccccceeeccCCCCccccc
Q 001202 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNK-HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1124)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~-~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~ 180 (1124)
+..+ ...+++.|.|+..-++ .++.|.+|..|.. |+........+ ..|..-+.+|
T Consensus 279 --------------------~~k~--~~aH~ggv~~L~~lr~GtllSGgKDRki~~--Wd~~y~k~r~~-elPe~~G~iR 333 (626)
T KOG2106|consen 279 --------------------ISKQ--VHAHDGGVFSLCMLRDGTLLSGGKDRKIIL--WDDNYRKLRET-ELPEQFGPIR 333 (626)
T ss_pred --------------------EEeE--eeecCCceEEEEEecCccEeecCccceEEe--ccccccccccc-cCchhcCCee
Confidence 1111 1144556666554333 4555777777654 77543322211 1334444455
Q ss_pred cccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccceecCCCCeE
Q 001202 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV 260 (1124)
Q Consensus 181 ~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v 260 (1124)
.+.-.... +.-+... +..-.-....+..+.. --+.+..+-++.+|+...+++++.|+.+++|+....+--.-..+++
T Consensus 334 tv~e~~~d-i~vGTtr-N~iL~Gt~~~~f~~~v-~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~ 410 (626)
T KOG2106|consen 334 TVAEGKGD-ILVGTTR-NFILQGTLENGFTLTV-QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPA 410 (626)
T ss_pred EEecCCCc-EEEeecc-ceEEEeeecCCceEEE-EecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCce
Confidence 44321111 1111100 0000000111222221 2233456778889999999999999999999944332113335666
Q ss_pred -EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCC-
Q 001202 261 -CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG- 338 (1124)
Q Consensus 261 -~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~- 338 (1124)
|++|+|.| .+|.|...|...|.|..+ ...+ +++ - ...++++++|+|||.+||+|+.|+.|.||.+..
T Consensus 411 ~~~~fhpsg-~va~Gt~~G~w~V~d~e~-~~lv-~~~----~----d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 411 ECADFHPSG-VVAVGTATGRWFVLDTET-QDLV-TIH----T----DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred eEeeccCcc-eEEEeeccceEEEEeccc-ceeE-EEE----e----cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 99999999 999999999999999876 4333 233 1 367899999999999999999999999999954
Q ss_pred CeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceE-EEEec--cceEEeeccCC
Q 001202 339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV-LIFSF--GKCCLNRGVSG 412 (1124)
Q Consensus 339 ~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v-~~~s~--~k~~~s~s~d~ 412 (1124)
++.......++.+.++.+.|++|+ +++.+-+ .++.|.+...+.....++ | |.-.- ....+.++.|+
T Consensus 480 g~~y~r~~k~~gs~ithLDwS~Ds----~~~~~~S~d~eiLyW~~~~~~~~ts~kD----vkW~t~~c~lGF~v~g~s~~ 551 (626)
T KOG2106|consen 480 GRKYSRVGKCSGSPITHLDWSSDS----QFLVSNSGDYEILYWKPSECKQITSVKD----VKWATYTCTLGFEVFGGSDG 551 (626)
T ss_pred CcEEEEeeeecCceeEEeeecCCC----ceEEeccCceEEEEEccccCcccceecc----eeeeeeEEEEEEEEecccCC
Confidence 444444444434899999999998 8887644 888996654433222111 1 10000 00112233333
Q ss_pred ceeeeEeeecCCeEEEeecCCCccceeeecc-------cc-eeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEc
Q 001202 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLN-------LP-VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 413 ~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~-------~p-~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~ 480 (1124)
+...--.. ...+-++..+++...+ +..+ .| ..|.+|..-|.+++|+-+...+.+.|.|..+ .|++
T Consensus 552 t~i~a~~r-s~~~~~lA~gdd~g~v--~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 552 TDINAVAR-SHCEKLLASGDDFGKV--HLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred chHHHhhh-hhhhhhhhccccCceE--EEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 32110000 0011111111111111 1111 12 4688999999999999888888888899988 8875
No 81
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.1e-18 Score=194.81 Aligned_cols=245 Identities=17% Similarity=0.197 Sum_probs=191.8
Q ss_pred ccCCCCceEEEE-EecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cC-CCCeE-EEEEccCCCEEEEEec
Q 001202 203 HKFPISSAIIWL-ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LG-SGDAV-CASIAPEQQILAVGTR 276 (1124)
Q Consensus 203 ~~~~~~~~I~~i-~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~g-h~~~v-~va~spdg~lLAsGs~ 276 (1124)
.|....+.|..+ ++.......+..+++|+.++++..++.+.+||....+.. .+ |...| |++|+ ...+.+|+.
T Consensus 201 lW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr 278 (484)
T KOG0305|consen 201 LWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSR 278 (484)
T ss_pred EEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecC
Confidence 344445555544 233455677788899999999999999999998765543 45 88888 99999 778999999
Q ss_pred CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeee
Q 001202 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 356 (1124)
Q Consensus 277 DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~ 356 (1124)
||.|..+|+........++. + |...|..++|++||.++|+|+.|+.+.|||........++.+| .+.|..+
T Consensus 279 ~~~I~~~dvR~~~~~~~~~~----~----H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H-~aAVKA~ 349 (484)
T KOG0305|consen 279 DGKILNHDVRISQHVVSTLQ----G----HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH-TAAVKAL 349 (484)
T ss_pred CCcEEEEEEecchhhhhhhh----c----ccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecc-ceeeeEe
Confidence 99999999987333333344 4 9999999999999999999999999999999888889999998 8899999
Q ss_pred EEcCCCCCCcceEEEee-----eEEEEeCCCCeEEEEecCCcceE--EEEec-cceEEee-c-cCCceeeeEeeecCCeE
Q 001202 357 IVKPNQDCKYEPLMSGT-----SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNR-G-VSGMTYARQVIYGEDRL 426 (1124)
Q Consensus 357 ~~sp~~~~~~~~l~sg~-----~i~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~-s-~d~~v~~w~l~~~~~~l 426 (1124)
+|+|-.. ..|++|. .+++|+..++..+..... ..+| +.++. .+.++++ + .++.+.+|..-+-.
T Consensus 350 awcP~q~---~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~--- 422 (484)
T KOG0305|consen 350 AWCPWQS---GLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK--- 422 (484)
T ss_pred eeCCCcc---CceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc---
Confidence 9999763 6777765 899999999988776533 4456 44444 4444443 2 34456677654422
Q ss_pred EEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC
Q 001202 427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 427 ~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s 482 (1124)
....+.+|...|-++++||||..+++|+.|.++ +|++-.
T Consensus 423 -----------------~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 423 -----------------LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred -----------------eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 256778999999999999999999999999999 998744
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.79 E-value=1.2e-17 Score=201.16 Aligned_cols=261 Identities=15% Similarity=0.237 Sum_probs=187.3
Q ss_pred eEEEEecCCcEEEEEe--cCCceEeeecccc------------ce---ecCCCCeE-EEEEccCCCEEEEEecCCeEEEE
Q 001202 222 LLFVLYSNGQLMSCSV--SKKGLKLAEFIKI------------DK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELY 283 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~--~d~~i~~wd~~~~------------~~---~~gh~~~v-~va~spdg~lLAsGs~DgtV~vw 283 (1124)
..+.++|||..+++++ .|+++.+|+...- +. ...|...| |+.|+|||++||+|+.|+.|.||
T Consensus 17 fSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW 96 (942)
T KOG0973|consen 17 FSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIW 96 (942)
T ss_pred EEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEe
Confidence 4566779999999998 7888889965311 00 14689999 99999999999999999999999
Q ss_pred EcCC------CC-----------ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEec
Q 001202 284 DLAE------SA-----------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1124)
Q Consensus 284 d~~~------~~-----------~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~ 346 (1124)
+... .+ +....+. | |.+.|..++|+||+.+||+++.|++|.|||..+..++.+++
T Consensus 97 ~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~----~----H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 97 ERAEIGSGTVFGSTGGAKNVESWKVVSILR----G----HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred eecccCCcccccccccccccceeeEEEEEe----c----CCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 9873 00 1222333 4 99999999999999999999999999999999999999999
Q ss_pred cCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcc------eE--EEEec-cceEEeecc-CCc
Q 001202 347 QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE------RV--LIFSF-GKCCLNRGV-SGM 413 (1124)
Q Consensus 347 ~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~------~v--~~~s~-~k~~~s~s~-d~~ 413 (1124)
+| .+.|..+.|.|-| +++++-+ ++++|......+.....++-+ .+ ..++| |+.+++... .+.
T Consensus 169 ~H-~s~VKGvs~DP~G----ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 169 GH-QSLVKGVSWDPIG----KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred cc-cccccceEECCcc----CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 99 7899999999999 8998865 999999777666666554322 22 34455 676665432 111
Q ss_pred eeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccC------C-------C----EEEEEcCCCeE
Q 001202 414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD------G-------M----FLAVAGLHGLI 476 (1124)
Q Consensus 414 v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~Spd------G-------~----~lAvag~dG~v 476 (1124)
...-.+.+- ...+.-..+.||..|+.++.|+|. + . .+|+||+|+.+
T Consensus 244 ~~~~~IieR-----------------~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSl 306 (942)
T KOG0973|consen 244 KSTIAIIER-----------------GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSL 306 (942)
T ss_pred cceeEEEec-----------------CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccE
Confidence 111111111 112234578899999999999872 1 1 68899999999
Q ss_pred -EEEcCCCcEEEecCcCceeeeEEEEEEecCC--EEEEEEE
Q 001202 477 -LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK--IIVVCNY 514 (1124)
Q Consensus 477 -lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~--~liv~~~ 514 (1124)
+|.....| .+|- ..+--+-.|..|.|..| .|.+|.+
T Consensus 307 SVW~T~~~R-Pl~v-i~~lf~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 307 SVWNTALPR-PLFV-IHNLFNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred EEEecCCCC-chhh-hhhhhcCceeeeeEcCCCCeEEEEec
Confidence 99986554 2221 11111124779999844 4555544
No 83
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.78 E-value=1.1e-15 Score=178.35 Aligned_cols=374 Identities=17% Similarity=0.191 Sum_probs=249.4
Q ss_pred eEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEE
Q 001202 134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (1124)
Q Consensus 134 ~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~ 213 (1124)
.|.-+.+.|++++.+..++.+.+|.-....+..+ +. ++| .......|++
T Consensus 116 ~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~-----------l~-~~~-------------------~~~~~~~Ita 164 (910)
T KOG1539|consen 116 KVHLLLPFGEHLIAVDISNILFVWKTSSIQEELY-----------LQ-STF-------------------LKVEGDFITA 164 (910)
T ss_pred eEEEEeeecceEEEEEccCcEEEEEecccccccc-----------cc-cee-------------------eeccCCceee
Confidence 4444556689999999999888754332101000 00 000 1112223666
Q ss_pred EEecCC-cceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCC
Q 001202 214 LELCLP-MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES 288 (1124)
Q Consensus 214 i~~s~~-~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~ 288 (1124)
+.+.+. .|..+. ++.++..++|+..+++.. .++.+.| ++.-+|-=..+|+|..||+|.++++..
T Consensus 165 l~HP~TYLNKIvv----------Gs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~- 233 (910)
T KOG1539|consen 165 LLHPSTYLNKIVV----------GSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF- 233 (910)
T ss_pred EecchhheeeEEE----------eecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc-
Confidence 665443 344443 445555667888877654 6777777 999999999999999999999999998
Q ss_pred CceeEEEeeccCCCCCCCC-CCeEEEEECCCCC-EEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCc
Q 001202 289 ASLIRTVSLYDWGYSMDDT-GPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKY 366 (1124)
Q Consensus 289 ~~~~~~l~~~~~g~~~~h~-g~V~~lawSPDG~-~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~ 366 (1124)
++.+.+++ |. |+|++++|..||. .+|+|...|.+.+||+.+.+++..++..|...+....|-|..
T Consensus 234 dkil~sFk---------~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e---- 300 (910)
T KOG1539|consen 234 DKILMSFK---------QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE---- 300 (910)
T ss_pred CcEEEEEE---------ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC----
Confidence 88888888 64 9999999999998 677888889999999999999998886547788888888775
Q ss_pred ceEEEee---eEEEEeCC--C--CeEEEEecCCcceEEEEec----cceEEeeccCCceeeeEeeecCCeEEEee-----
Q 001202 367 EPLMSGT---SMMQWDEY--G--YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQ----- 430 (1124)
Q Consensus 367 ~~l~sg~---~i~~W~~~--~--~~l~~~~~~~~~~v~~~s~----~k~~~s~s~d~~v~~w~l~~~~~~l~l~~----- 430 (1124)
..+++.+ +.+.|-.+ . .+++....||.....++.+ +..+.+.+.|++.+...+.+....--+.+
T Consensus 301 pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~ 380 (910)
T KOG1539|consen 301 PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKK 380 (910)
T ss_pred ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccc
Confidence 5555544 66667443 2 3667777788877755555 67889999999877665432211100000
Q ss_pred c----------------------CCCccc----------------eeee--------cccceeeccCCCceEEEEEccCC
Q 001202 431 S----------------------EDTDEL----------------KILH--------LNLPVSYISQNWPVQHVAASKDG 464 (1124)
Q Consensus 431 ~----------------------~~~~~~----------------~w~~--------~~~p~~~~~~~~~I~~va~SpdG 464 (1124)
. .+.... .|.. .--|..+......++++++|++|
T Consensus 381 ~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG 460 (910)
T KOG1539|consen 381 RAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG 460 (910)
T ss_pred ccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC
Confidence 0 000001 1321 11122233334678999999999
Q ss_pred CEEEEEcCCCeE-EEEcCCCcEE-EecCcCceeeeEEEEEEec--CCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEe
Q 001202 465 MFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK 540 (1124)
Q Consensus 465 ~~lAvag~dG~v-lwd~~sg~wk-~f~~~~~e~~~~v~gl~W~--~~~liv~~~~~~~~~~elrly~~~~ld~~~~l~~~ 540 (1124)
++..+|...|.| +|++++|.-+ .|++ .+..+..|+|++-. +..+|+|++ +.-+.+|++. ...++...
T Consensus 461 NF~~IG~S~G~Id~fNmQSGi~r~sf~~-~~ah~~~V~gla~D~~n~~~vsa~~-----~Gilkfw~f~---~k~l~~~l 531 (910)
T KOG1539|consen 461 NFVFIGYSKGTIDRFNMQSGIHRKSFGD-SPAHKGEVTGLAVDGTNRLLVSAGA-----DGILKFWDFK---KKVLKKSL 531 (910)
T ss_pred ceEEEeccCCeEEEEEcccCeeeccccc-CccccCceeEEEecCCCceEEEccC-----cceEEEEecC---Ccceeeee
Confidence 999999999999 9999999765 4652 23334568877765 445777755 3378999885 22245555
Q ss_pred ecCCccEEEEeeC--CEEEEEEcCCeEEEEEEE
Q 001202 541 SLLAKPIVMDVYE--DYILVTYRPFDVHIFHVK 571 (1124)
Q Consensus 541 ~l~s~~l~l~~~~--~~llv~~~d~~i~l~~~~ 571 (1124)
.+...+..+...+ +.+++.++|..|.++++.
T Consensus 532 ~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~ 564 (910)
T KOG1539|consen 532 RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV 564 (910)
T ss_pred ccCCCcceeeeeehhhhhhhhcCceeEEEEEch
Confidence 5555554444333 345558899999999876
No 84
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.78 E-value=1.7e-18 Score=187.76 Aligned_cols=263 Identities=16% Similarity=0.192 Sum_probs=197.2
Q ss_pred EEEecCCcEEEEEecCCceEeeeccccce-----ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEee
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~~-----~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~ 297 (1124)
+.+.++...+++++.|..|++|+....+. +.|..+.+ .+.|.++++.+.+++.|+.+++|+++. .....++.
T Consensus 181 v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~-~r~~~TLs- 258 (459)
T KOG0288|consen 181 VEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS-LRLRHTLS- 258 (459)
T ss_pred eEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc-hhhhhhhc-
Confidence 33446767789999999999998765431 24666777 999999999999999999999999998 88888888
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---e
Q 001202 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~ 374 (1124)
| |++.|+++.|.-....+++|+.|.+|+.||+..+.|..+.-- .+.+..+..++ ..++||- +
T Consensus 259 ---G----HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~~------~~~~SgH~Dkk 323 (459)
T KOG0288|consen 259 ---G----HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP--GSQCNDIVCSI------SDVISGHFDKK 323 (459)
T ss_pred ---c----cccceeeehhhccccceeeccccchhhhhhhhhhheeccccc--cccccceEecc------eeeeecccccc
Confidence 7 999999999998888899999999999999998887766543 23444444432 3456665 8
Q ss_pred EEEEeCCCCeEEEEecCCcceE--EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccC
Q 001202 375 MMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (1124)
Q Consensus 375 i~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~ 451 (1124)
+++||..+..+......+ +.| +.+++ +..+++.+.|.++++.++...+-+.... -+.-..+|
T Consensus 324 vRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s--------------A~g~k~as 388 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS--------------AEGFKCAS 388 (459)
T ss_pred eEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEee--------------cccccccc
Confidence 999999998888777664 377 45555 7788888999999998876655432111 12222345
Q ss_pred CCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEec--CCEEEEEEEecCCCeEEEEEe
Q 001202 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFY 526 (1124)
Q Consensus 452 ~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~--~~~liv~~~~~~~~~~elrly 526 (1124)
+ .+.+.|||||.|+|+||.||.+ +|++.++|..........+ -.+..+.|. |.++++| +....+.+|
T Consensus 389 D--wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~-~aI~s~~W~~sG~~Llsa-----dk~~~v~lW 458 (459)
T KOG0288|consen 389 D--WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN-AAITSLSWNPSGSGLLSA-----DKQKAVTLW 458 (459)
T ss_pred c--cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC-cceEEEEEcCCCchhhcc-----cCCcceEec
Confidence 5 4679999999999999999999 9999999876443333332 147788886 5677776 334445554
No 85
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.78 E-value=6.1e-17 Score=184.60 Aligned_cols=404 Identities=13% Similarity=0.141 Sum_probs=263.2
Q ss_pred eeCCeEEEE-EcCCcEEEEecCCCceeEEEEeeChH------------------HHhhhcceeEEEEecCCcEEEEEeCC
Q 001202 28 KVNNGLLLI-ASPCHIELWSSSQHKVRLGKYKRDSE------------------SVQREGENLQAVWSPDTKLIAVVTSS 88 (1124)
Q Consensus 28 S~dg~llA~-~~~~~l~IW~~~~~~~~l~~~~r~~~------------------sl~~~G~~~~v~wSPDg~~Lav~t~d 88 (1124)
+...+++++ +.++.|+|++.. ...-++.+.|+.- +-+.+-...++.|+|....|.+.-.|
T Consensus 267 cVs~r~I~cgCa~g~vrlFnp~-tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYnd 345 (1080)
T KOG1408|consen 267 CVSSRLIACGCAKGMVRLFNPE-TLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYND 345 (1080)
T ss_pred eeecceEEEeeccceeeecCcc-hhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcC
Confidence 345567666 567889999875 3332333322210 01112223578899999999999999
Q ss_pred CeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCcccccee
Q 001202 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFE 168 (1124)
Q Consensus 89 g~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~ 168 (1124)
..|.+||+..-.+. ++-...+...+-.|..+ ..+...+.....|+. ..-++.+++||+|++|..+.-++...
T Consensus 346 hSlYvWDvrD~~kv----gk~~s~lyHS~ciW~Ve-~~p~nv~~~~~aclp--~~cF~TCSsD~TIRlW~l~~ctnn~v- 417 (1080)
T KOG1408|consen 346 HSLYVWDVRDVNKV----GKCSSMLYHSACIWDVE-NLPCNVHSPTAACLP--RGCFTTCSSDGTIRLWDLAFCTNNQV- 417 (1080)
T ss_pred ceEEEEeccccccc----cceeeeeeccceeeeec-cccccccCcccccCC--ccceeEecCCCcEEEeecccccccce-
Confidence 99999999754321 00000011111223322 122233333333432 23477888999999865554322221
Q ss_pred eccCCCCccccccccccCCCC-cccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeec
Q 001202 169 LVHSSNDSSVAALSHHFPSNG-LASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF 247 (1124)
Q Consensus 169 l~~~~~~~~~i~~i~fs~~~q-l~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~ 247 (1124)
.....-+..+..+++..+.+ ..--.+.+ . . +....+.--+..+..+++++|||+.+++|-..+++++++.
T Consensus 418 -yrRNils~~l~ki~y~d~~~q~~~d~~~~------~-f-dka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~L 488 (1080)
T KOG1408|consen 418 -YRRNILSANLSKIPYEDSTQQIMHDASAG------I-F-DKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDL 488 (1080)
T ss_pred -eecccchhhhhcCccccCchhhhhhccCC------c-c-cccchhhcCcccceEEEEECCCcceecccCccCceEEEEe
Confidence 00011122344555544433 10000000 0 0 0001111112234467888999999999988999999998
Q ss_pred ccccee---cCCCCeE-EEEEccC---CCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCC-
Q 001202 248 IKIDKE---LGSGDAV-CASIAPE---QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN- 319 (1124)
Q Consensus 248 ~~~~~~---~gh~~~v-~va~spd---g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG- 319 (1124)
...+.. ..|...| |+.+|.- .++||+|+.|.-|.|||+...-.+..++. + |...|++|.|-..|
T Consensus 489 q~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld----~----HSssITsvKFa~~gl 560 (1080)
T KOG1408|consen 489 QELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD----G----HSSSITSVKFACNGL 560 (1080)
T ss_pred hhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc----c----cccceeEEEEeecCC
Confidence 765432 6799999 9999863 67999999999999999987456666776 5 99999999999887
Q ss_pred -CEEEEEECCCcEEEEEcCC----CeeeEE-eccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEec
Q 001202 320 -SAFAVGWKSRGLTVWSVSG----CRLMST-IRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE 390 (1124)
Q Consensus 320 -~~Lasgs~Dg~I~vWdv~~----~~l~~t-l~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~ 390 (1124)
..+++++.|+.|. ++++. +.+.-. -..-+...+..++..|.. ..++++. .+++++++.++.....+
T Consensus 561 n~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~----k~v~t~cQDrnirif~i~sgKq~k~FK 635 (1080)
T KOG1408|consen 561 NRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS----KLVVTVCQDRNIRIFDIESGKQVKSFK 635 (1080)
T ss_pred ceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCCCc----ceEEEEecccceEEEeccccceeeeec
Confidence 6899999997764 44432 222111 101113457788888876 7777777 89999999999888776
Q ss_pred C---CcceE--EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCC
Q 001202 391 G---SSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (1124)
Q Consensus 391 ~---~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG 464 (1124)
+ |++.+ +.+++ +-++++.+.|.++.++|+..|+. .....||...|+.+.|++|-
T Consensus 636 gs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc--------------------vA~m~GHsE~VTG~kF~nDC 695 (1080)
T KOG1408|consen 636 GSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC--------------------VAQMTGHSEAVTGVKFLNDC 695 (1080)
T ss_pred ccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh--------------------hhhhcCcchheeeeeecccc
Confidence 5 43444 66777 88999999999999999888776 56678999999999999999
Q ss_pred CEEEEEcCCCeE-EEEcCC
Q 001202 465 MFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 465 ~~lAvag~dG~v-lwd~~s 482 (1124)
++|.+++.||.| +|.+..
T Consensus 696 kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 696 KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhheeecCCceEEEEECch
Confidence 999999999999 998754
No 86
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=9.5e-18 Score=171.71 Aligned_cols=235 Identities=14% Similarity=0.222 Sum_probs=177.6
Q ss_pred CCCCeE-EEEEccCC-CEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECC-CCCEEEEEECCCcE
Q 001202 255 GSGDAV-CASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGL 331 (1124)
Q Consensus 255 gh~~~v-~va~spdg-~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I 331 (1124)
.-.+++ .|+||+.. ..+++++-||++++||......+++.++ +|...|.++.|++ +++.+++++.|++|
T Consensus 58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~k--------EH~~EV~Svdwn~~~r~~~ltsSWD~Ti 129 (311)
T KOG0277|consen 58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFK--------EHKREVYSVDWNTVRRRIFLTSSWDGTI 129 (311)
T ss_pred ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHH--------hhhhheEEeccccccceeEEeeccCCce
Confidence 346778 99999974 5678888999999999776556666666 4999999999998 56688888999999
Q ss_pred EEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEecc----ce
Q 001202 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFG----KC 404 (1124)
Q Consensus 332 ~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~~----k~ 404 (1124)
|+|+..-+.-++|+.|| .+-|...+|+|... +.+++.+ +.++||.+..--.+....|...+++.++. ..
T Consensus 130 KLW~~~r~~Sv~Tf~gh-~~~Iy~a~~sp~~~---nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~v 205 (311)
T KOG0277|consen 130 KLWDPNRPNSVQTFNGH-NSCIYQAAFSPHIP---NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNV 205 (311)
T ss_pred EeecCCCCcceEeecCC-ccEEEEEecCCCCC---CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcE
Confidence 99999999999999998 78899999999763 5566554 89999987544444477888888888873 36
Q ss_pred EEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCC-CEEEEEcCCCeE-EEEcCC
Q 001202 405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 405 ~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG-~~lAvag~dG~v-lwd~~s 482 (1124)
++||+.|+.++.||+..-... ...+.+|.-.|+.+.|||-. ..||+++.|-++ +||...
T Consensus 206 l~Tg~vd~~vr~wDir~~r~p-------------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 206 LATGGVDNLVRGWDIRNLRTP-------------------LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER 266 (311)
T ss_pred EEecCCCceEEEEehhhcccc-------------------ceeecCCceEEEEEecCcchhhHhhhccccceEEeccccc
Confidence 889999999999998765541 24667899999999999964 588999999999 999865
Q ss_pred CcEEEecCcCceeeeEEEEEEec---CCEEEEEEEecCCCeEEEEEee
Q 001202 483 KKWRVFGDITQEQKIQSKGLLWL---GKIIVVCNYIDSSNTYELLFYP 527 (1124)
Q Consensus 483 g~wk~f~~~~~e~~~~v~gl~W~---~~~liv~~~~~~~~~~elrly~ 527 (1124)
+.- ..+...+-.+| +.|+.|. +..+..++. +..+.+|+
T Consensus 267 ~ds-~~e~~~~HtEF-v~g~Dws~~~~~~vAs~gW-----De~l~Vw~ 307 (311)
T KOG0277|consen 267 QDS-AIETVDHHTEF-VCGLDWSLFDPGQVASTGW-----DELLYVWN 307 (311)
T ss_pred chh-hhhhhhccceE-EeccccccccCceeeeccc-----ccceeeec
Confidence 321 11112222222 5577774 344444433 22456664
No 87
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=4.5e-17 Score=171.59 Aligned_cols=231 Identities=15% Similarity=0.251 Sum_probs=182.8
Q ss_pred CCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCC--EEEEEecCC
Q 001202 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQ--ILAVGTRRG 278 (1124)
Q Consensus 205 ~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~--lLAsGs~Dg 278 (1124)
..|.++|++++. +|+++++|++|.+|+++|..+.... ..|.+.+ ++.|.+..+ .|.+|+.||
T Consensus 40 ~aH~~sitavAV------------s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 40 SAHAGSITALAV------------SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred cccccceeEEEe------------cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC
Confidence 355666665443 4999999999999999998876543 5788888 999999876 899999999
Q ss_pred eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEE
Q 001202 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (1124)
Q Consensus 279 tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~ 358 (1124)
.|.+|++.. -.++.+++ + |++.|+.++.+|.|+.-.+.+.|+.++.||+-.|+.-..+.-. ...+.+.|
T Consensus 108 ~i~iw~~~~-W~~~~slK----~----H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--~~at~v~w 176 (362)
T KOG0294|consen 108 HIIIWRVGS-WELLKSLK----A----HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--NKATLVSW 176 (362)
T ss_pred cEEEEEcCC-eEEeeeec----c----cccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC--CcceeeEE
Confidence 999999987 67777777 5 9999999999999999999999999999999877654433321 23345889
Q ss_pred cCCCCCCcce-EEEee-eEEEEeCCCCeEEEEecCCcceEEEEec--cceEEeeccCCceeeeEeeecCCeEEEeecCCC
Q 001202 359 KPNQDCKYEP-LMSGT-SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (1124)
Q Consensus 359 sp~~~~~~~~-l~sg~-~i~~W~~~~~~l~~~~~~~~~~v~~~s~--~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~ 434 (1124)
+|.| +. .+.+. .+-+|..+..+++..... +.++.+..| +..+++|+.++.+.+||.....
T Consensus 177 ~~~G----d~F~v~~~~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~----------- 240 (362)
T KOG0294|consen 177 SPQG----DHFVVSGRNKIDIYQLDNASVFREIEN-PKRILCATFLDGSELLVGGDNEWISLKDTDSDT----------- 240 (362)
T ss_pred cCCC----CEEEEEeccEEEEEecccHhHhhhhhc-cccceeeeecCCceEEEecCCceEEEeccCCCc-----------
Confidence 9988 53 34333 788899888777765543 345666666 6778899999999998854322
Q ss_pred ccceeeecccceeeccCCCceEEEEE--ccCCCEEEEEcCCCeE-EEEcCCC
Q 001202 435 DELKILHLNLPVSYISQNWPVQHVAA--SKDGMFLAVAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 435 ~~~~w~~~~~p~~~~~~~~~I~~va~--SpdG~~lAvag~dG~v-lwd~~sg 483 (1124)
.+..+.+|...|..+.+ .|++.||+++|.||.| +||+...
T Consensus 241 ---------~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 241 ---------PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ---------cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 35778899999999985 6889999999999999 9999764
No 88
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.78 E-value=5.3e-17 Score=193.96 Aligned_cols=268 Identities=18% Similarity=0.224 Sum_probs=208.8
Q ss_pred cCCCCe-E-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEE-EeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCc
Q 001202 254 LGSGDA-V-CASIAPEQQILAVGTRRGVVELYDLAESASLIRT-VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (1124)
Q Consensus 254 ~gh~~~-v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~-l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~ 330 (1124)
.+|.+. + |..|. ...+++|+.|+++++|+..+ +..+.+ +. | |.|.|.++++..-+..|++|+.|++
T Consensus 204 ~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~-~~~i~~~l~----G----H~g~V~~l~~~~~~~~lvsgS~D~t 272 (537)
T KOG0274|consen 204 LGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN-GYLILTRLV----G----HFGGVWGLAFPSGGDKLVSGSTDKT 272 (537)
T ss_pred cccCcchhhhheee--cCeEEecCCCceeEEeeccc-ceEEEeecc----C----CCCCceeEEEecCCCEEEEEecCCc
Confidence 444443 3 77777 66899999999999999988 665555 66 6 9999999999887889999999999
Q ss_pred EEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec-cceEE
Q 001202 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCL 406 (1124)
Q Consensus 331 I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~ 406 (1124)
++|||..++.+.+++.+| .+.|..+...+ ..+.+|+ ++++|+..++.++.+..+|...|.++.. +..++
T Consensus 273 ~rvWd~~sg~C~~~l~gh-~stv~~~~~~~------~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lv 345 (537)
T KOG0274|consen 273 ERVWDCSTGECTHSLQGH-TSSVRCLTIDP------FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLV 345 (537)
T ss_pred EEeEecCCCcEEEEecCC-CceEEEEEccC------ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEE
Confidence 999999999999999998 77777776544 3455656 9999999999999999999999988888 78899
Q ss_pred eeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCC-c
Q 001202 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK-K 484 (1124)
Q Consensus 407 s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg-~ 484 (1124)
+|+.|+++++|++..+.. ..++.+|...|.++.+.+. .++.+|+-|+++ +||+.++ +
T Consensus 346 sgs~d~~v~VW~~~~~~c--------------------l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~ 404 (537)
T KOG0274|consen 346 SGSYDGTVKVWDPRTGKC--------------------LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRK 404 (537)
T ss_pred EEecCceEEEEEhhhcee--------------------eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhh
Confidence 999999999999875544 6778899999999988766 899999999999 9999998 3
Q ss_pred EEEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEeecC--CccEEEEeeCCEEEEEEcC
Q 001202 485 WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLL--AKPIVMDVYEDYILVTYRP 562 (1124)
Q Consensus 485 wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~~~ld~~~~l~~~~l~--s~~l~l~~~~~~llv~~~d 562 (1124)
.... ..+.. ..+.++.-++++++.+.. +..|++|+.+.. ..+.+..-+ ..+.++...+..++..+.|
T Consensus 405 c~~t--l~~h~-~~v~~l~~~~~~Lvs~~a-----D~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~~~~~il~s~~~ 473 (537)
T KOG0274|consen 405 CIHT--LQGHT-SLVSSLLLRDNFLVSSSA-----DGTIKLWDAEEG---ECLRTLEGRHVGGVSALALGKEEILCSSDD 473 (537)
T ss_pred hhhh--hcCCc-ccccccccccceeEeccc-----cccEEEeecccC---ceeeeeccCCcccEEEeecCcceEEEEecC
Confidence 3221 11111 234567777888888755 238999977422 233333332 2233444445678888999
Q ss_pred CeEEEEEEE
Q 001202 563 FDVHIFHVK 571 (1124)
Q Consensus 563 ~~i~l~~~~ 571 (1124)
+.+.+|++.
T Consensus 474 ~~~~l~dl~ 482 (537)
T KOG0274|consen 474 GSVKLWDLR 482 (537)
T ss_pred CeeEEEecc
Confidence 999999886
No 89
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.77 E-value=1.2e-17 Score=174.71 Aligned_cols=249 Identities=15% Similarity=0.204 Sum_probs=179.5
Q ss_pred eEEEEeeCCeEEEEEcC-CcEEEEecC------CCceeE-----E--EEeeChHHHhhhcceeEEEEecCCcEEEEEeCC
Q 001202 23 QIIYFKVNNGLLLIASP-CHIELWSSS------QHKVRL-----G--KYKRDSESVQREGENLQAVWSPDTKLIAVVTSS 88 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~~-~~l~IW~~~------~~~~~l-----~--~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d 88 (1124)
.+.+|||||.++|+++. .+|+|.|+. +|...+ . ...|+.- .+-.++..+.|-|-.+.|+.++.|
T Consensus 116 R~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY--DH~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 116 RAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY--DHVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred eeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh--hccCcccceeecchhheEEeccCC
Confidence 45789999999999885 589999996 111100 0 1223321 244678899999999999999999
Q ss_pred CeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCcccccee
Q 001202 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFE 168 (1124)
Q Consensus 89 g~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~ 168 (1124)
++|++||......+...+..+ +.......++.+.|+.+++||.-..+++++ -++.+++.
T Consensus 194 ~tvKlFDfsK~saKrA~K~~q-------------------d~~~vrsiSfHPsGefllvgTdHp~~rlYd--v~T~Qcfv 252 (430)
T KOG0640|consen 194 NTVKLFDFSKTSAKRAFKVFQ-------------------DTEPVRSISFHPSGEFLLVGTDHPTLRLYD--VNTYQCFV 252 (430)
T ss_pred CeEEEEecccHHHHHHHHHhh-------------------ccceeeeEeecCCCceEEEecCCCceeEEe--ccceeEee
Confidence 999999987543211111111 111112234456789999999999998864 33444441
Q ss_pred eccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecc
Q 001202 169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI 248 (1124)
Q Consensus 169 l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~ 248 (1124)
...+..++...|+++.|+ +.|+++++++.|+.|++||+.
T Consensus 253 -------------------------------sanPd~qht~ai~~V~Ys----------~t~~lYvTaSkDG~IklwDGV 291 (430)
T KOG0640|consen 253 -------------------------------SANPDDQHTGAITQVRYS----------STGSLYVTASKDGAIKLWDGV 291 (430)
T ss_pred -------------------------------ecCcccccccceeEEEec----------CCccEEEEeccCCcEEeeccc
Confidence 112345788899998888 889999999999999999999
Q ss_pred cccee----cCCCCe-E-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeec------------------------
Q 001202 249 KIDKE----LGSGDA-V-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY------------------------ 298 (1124)
Q Consensus 249 ~~~~~----~gh~~~-v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~------------------------ 298 (1124)
.+++. ..|.++ | +..|..+|++|.+.+.|.+|++|.+.+ ++++......
T Consensus 292 S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t-~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~p 370 (430)
T KOG0640|consen 292 SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST-GRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFP 370 (430)
T ss_pred cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC-CceEEEEecCCcccchhhhhhhhhcCccceEEcc
Confidence 98776 467654 4 778999999999999999999999987 4433322100
Q ss_pred --------cCC---------CCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEc
Q 001202 299 --------DWG---------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1124)
Q Consensus 299 --------~~g---------~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv 336 (1124)
.|. .+-+|+|+|.++.-||.+-.+++|+.|..++.|--
T Consensus 371 DEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 371 DEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 000 12279999999999999999999999999999953
No 90
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.6e-16 Score=165.77 Aligned_cols=276 Identities=15% Similarity=0.169 Sum_probs=197.8
Q ss_pred hcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEE
Q 001202 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (1124)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~ll 146 (1124)
.+++.++.|++||..+++++.|..++|||...+....... .+.-...+.|+......++
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~---------------------skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN---------------------SKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee---------------------cccccccEEEEecCCceEE
Confidence 5778999999999999999999999999997654211110 0000112445555556666
Q ss_pred EEec--CCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEE
Q 001202 147 LGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1124)
Q Consensus 147 v~t~--dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~ 224 (1124)
.++. |.+|+.++.......+ .+.+|+..|+++.-+
T Consensus 73 ~sStk~d~tIryLsl~dNkylR------------------------------------YF~GH~~~V~sL~~s------- 109 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR------------------------------------YFPGHKKRVNSLSVS------- 109 (311)
T ss_pred EccCCCCCceEEEEeecCceEE------------------------------------EcCCCCceEEEEEec-------
Confidence 6554 6677776655443322 255788888776666
Q ss_pred EEecCCcEEEEEecCCceEeeecccccee--cCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCC-ceeEEEeeccCC
Q 001202 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYDWG 301 (1124)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~wd~~~~~~~--~gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~-~~~~~l~~~~~g 301 (1124)
|-+..+++++.|+++++||....++. .......++||.|+|-++|+|.....|++||+...+ ++..++.+.+
T Consensus 110 ---P~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~-- 184 (311)
T KOG1446|consen 110 ---PKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD-- 184 (311)
T ss_pred ---CCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC--
Confidence 66788899999999999999866543 112223389999999999999988899999998753 4555555432
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCc--eeeeEEcCCCCCCcceEEEee---eEE
Q 001202 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS--ISSPIVKPNQDCKYEPLMSGT---SMM 376 (1124)
Q Consensus 302 ~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~--V~s~~~sp~~~~~~~~l~sg~---~i~ 376 (1124)
+.....+.|.|||||++|..+...+.+.+-|.+.|...+++.++..+. --+..|.|++ +.+++|+ ++.
T Consensus 185 ---~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds----~Fvl~gs~dg~i~ 257 (311)
T KOG1446|consen 185 ---NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS----KFVLSGSDDGTIH 257 (311)
T ss_pred ---CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC----cEEEEecCCCcEE
Confidence 245678999999999999999999999999999999999998862221 1467789999 8999887 899
Q ss_pred EEeCCCCeEEEEecC-CcceE--EEEeccceEEeeccCCceeeeEe
Q 001202 377 QWDEYGYRLYAIEEG-SSERV--LIFSFGKCCLNRGVSGMTYARQV 419 (1124)
Q Consensus 377 ~W~~~~~~l~~~~~~-~~~~v--~~~s~~k~~~s~s~d~~v~~w~l 419 (1124)
+|+.++++.+....+ +...+ ..|.|. ...-.+.+..+..|..
T Consensus 258 vw~~~tg~~v~~~~~~~~~~~~~~~fnP~-~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 258 VWNLETGKKVAVLRGPNGGPVSCVRFNPR-YAMFVSASSNLVFWLP 302 (311)
T ss_pred EEEcCCCcEeeEecCCCCCCccccccCCc-eeeeeecCceEEEEec
Confidence 999999999888877 34444 444442 2223334445666653
No 91
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.3e-15 Score=171.41 Aligned_cols=423 Identities=13% Similarity=0.135 Sum_probs=242.4
Q ss_pred cceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEee-cCCeEE
Q 001202 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHML 146 (1124)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-d~~~ll 146 (1124)
.+++++++|.+++.||++-++|+|.||++..+-.. .. ..-.+.+.+|.+++. .+.+++
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~--------------------~~-vi~g~~drsIE~L~W~e~~RLF 84 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL--------------------EP-VIHGPEDRSIESLAWAEGGRLF 84 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCcee--------------------eE-EEecCCCCceeeEEEccCCeEE
Confidence 45789999999999999999999999999753210 00 000122334444333 477888
Q ss_pred EEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEE
Q 001202 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (1124)
Q Consensus 147 v~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~ 226 (1124)
....+|.|.. ||.....+. +.....+++|-+|+.+
T Consensus 85 S~g~sg~i~E--wDl~~lk~~----------------------------------~~~d~~gg~IWsiai~--------- 119 (691)
T KOG2048|consen 85 SSGLSGSITE--WDLHTLKQK----------------------------------YNIDSNGGAIWSIAIN--------- 119 (691)
T ss_pred eecCCceEEE--EecccCcee----------------------------------EEecCCCcceeEEEeC---------
Confidence 8888998865 775443222 0123345666555555
Q ss_pred ecCCcEEEEEecCCceEeeeccccc----eecC-CCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccC
Q 001202 227 YSNGQLMSCSVSKKGLKLAEFIKID----KELG-SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (1124)
Q Consensus 227 s~dG~~~~~~~~d~~i~~wd~~~~~----~~~g-h~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~ 300 (1124)
|.+..++.+++|+.+...+....+ ...+ .+..+ |++|+|++..||+||.||.|++||+.. +...+.....-.
T Consensus 120 -p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~-~~t~~~~~~~~d 197 (691)
T KOG2048|consen 120 -PENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS-GQTLHIITMQLD 197 (691)
T ss_pred -CccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC-CceEEEeeeccc
Confidence 555566666666644443332221 1122 24667 999999999999999999999999988 544441111100
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEE-ee--eEEE
Q 001202 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS-GT--SMMQ 377 (1124)
Q Consensus 301 g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~s-g~--~i~~ 377 (1124)
+.+....--|++|.|-.|| .||+|..-|+|++||...+.++.++.-| .+.|.+++..+++ +.+.+ |. ++..
T Consensus 198 ~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h-~adVl~Lav~~~~----d~vfsaGvd~~ii~ 271 (691)
T KOG2048|consen 198 RLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCH-DADVLALAVADNE----DRVFSAGVDPKIIQ 271 (691)
T ss_pred ccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhh-hcceeEEEEcCCC----CeEEEccCCCceEE
Confidence 1111123346777776565 6899999999999999999999999888 7889999998886 55554 44 5555
Q ss_pred EeCCCC-eEEEEe---cCCcceEEEEec-cceEEeeccCCceeeeEeeecC---Ce---------EEEeecCCCcccee-
Q 001202 378 WDEYGY-RLYAIE---EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGE---DR---------LLVVQSEDTDELKI- 439 (1124)
Q Consensus 378 W~~~~~-~l~~~~---~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~---~~---------l~l~~~~~~~~~~w- 439 (1124)
+...+. .-|... ..|...+-++.. ...+.+|+.|.++.+-...... .+ +....+...-...|
T Consensus 272 ~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~ 351 (691)
T KOG2048|consen 272 YSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWK 351 (691)
T ss_pred EEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEec
Confidence 544433 224332 234445544433 4467788888777554432210 00 00000000001123
Q ss_pred -------eecc-----------cceeeccCCCceEEEEEccCCCEEEEEcCCCeEEEEcCCCc-EE--EecCcCceeeeE
Q 001202 440 -------LHLN-----------LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKK-WR--VFGDITQEQKIQ 498 (1124)
Q Consensus 440 -------~~~~-----------~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~vlwd~~sg~-wk--~f~~~~~e~~~~ 498 (1124)
.... +..-.......|.+.|+||||+++|.+.-..+-+|.++... .+ ...+...+. ..
T Consensus 352 ~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~-~~ 430 (691)
T KOG2048|consen 352 AHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLAL-LD 430 (691)
T ss_pred cccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhh-cc
Confidence 1100 01111223345899999999999999987776678776421 11 111111111 11
Q ss_pred EE--EEEecCCEEEEEEEecCCCeEEEEEeeCC-----CCCCcceEEEeecCC-ccEEEEeeCCEEEEEEcCCeEEEEEE
Q 001202 499 SK--GLLWLGKIIVVCNYIDSSNTYELLFYPRY-----HLDQSSLLCRKSLLA-KPIVMDVYEDYILVTYRPFDVHIFHV 570 (1124)
Q Consensus 499 v~--gl~W~~~~liv~~~~~~~~~~elrly~~~-----~ld~~~~l~~~~l~s-~~l~l~~~~~~llv~~~d~~i~l~~~ 570 (1124)
.. .+.-.++-++.+.- +..++-.+.-+ .+.. +..+-..++ .-+..++.|+++++.++.+.|.+|++
T Consensus 431 a~~i~ftid~~k~~~~s~----~~~~le~~el~~ps~kel~~--~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl 504 (691)
T KOG2048|consen 431 ASAISFTIDKNKLFLVSK----NIFSLEEFELETPSFKELKS--IQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNL 504 (691)
T ss_pred ceeeEEEecCceEEEEec----ccceeEEEEecCcchhhhhc--cccccCCCcceeEEEcCCCCEEEEEeccceEEEEEc
Confidence 12 22334555555531 22233333221 1110 111111111 23567889999999999999999988
Q ss_pred E
Q 001202 571 K 571 (1124)
Q Consensus 571 ~ 571 (1124)
+
T Consensus 505 ~ 505 (691)
T KOG2048|consen 505 E 505 (691)
T ss_pred c
Confidence 7
No 92
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.77 E-value=4.5e-16 Score=181.67 Aligned_cols=377 Identities=14% Similarity=0.132 Sum_probs=240.1
Q ss_pred eeC---CeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceee
Q 001202 28 KVN---NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQ 104 (1124)
Q Consensus 28 S~d---g~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~ 104 (1124)
-|. ++.+.....+.+.||+++ .+-.+..+.+. ...++++.=+|-=.-+|+|+.+|.|+|+++..++...
T Consensus 167 HP~TYLNKIvvGs~~G~lql~Nvr-t~K~v~~f~~~------~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~- 238 (910)
T KOG1539|consen 167 HPSTYLNKIVVGSSQGRLQLWNVR-TGKVVYTFQEF------FSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM- 238 (910)
T ss_pred cchhheeeEEEeecCCcEEEEEec-cCcEEEEeccc------ccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE-
Confidence 455 445555667899999997 66556655443 2456788888877799999999999999998764311
Q ss_pred cCCCCCCCcceeeEEEEeeeeeecccccceEEEEee--cCCe-EEEEecCCcEEEEeccCccccceeeccCCCCcccccc
Q 001202 105 IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS--DNKH-MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (1124)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--d~~~-llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~ 181 (1124)
+ ++.+.+.|++++. ||.. |++|+++|.+-.|+.+.........+ .|...+..
T Consensus 239 ------------------s----Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n---ah~~sv~~ 293 (910)
T KOG1539|consen 239 ------------------S----FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN---AHYGSVTG 293 (910)
T ss_pred ------------------E----EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec---cccCCccc
Confidence 1 2223456766654 4654 55667789988755554332211111 12222222
Q ss_pred ccccCCCC-cccccCCCCeeecc-------------cCCCCceEEEEEecCCcceEEEEecCCcEEEEEe----------
Q 001202 182 SHHFPSNG-LASVDTSGAFVSDH-------------KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV---------- 237 (1124)
Q Consensus 182 i~fs~~~q-l~s~~~~~~~~~~~-------------~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~---------- 237 (1124)
.-|-++.. +.+.+.+..+.... -.+|..+-.++.|.. ..|..+.+..
T Consensus 294 ~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~---------~~g~~ilsa~~Drt~r~fs~ 364 (910)
T KOG1539|consen 294 ATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYG---------SQGHFILSAKQDRTLRSFSV 364 (910)
T ss_pred ceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeec---------cCcEEEEecccCcchhhhhh
Confidence 22222222 11111111111000 112333333333321 2222222222
Q ss_pred -------------------------------------------------------cCCceEeeecccc---ceecCCC--
Q 001202 238 -------------------------------------------------------SKKGLKLAEFIKI---DKELGSG-- 257 (1124)
Q Consensus 238 -------------------------------------------------------~d~~i~~wd~~~~---~~~~gh~-- 257 (1124)
++.....|+..+. +....++
T Consensus 365 ~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~ 444 (910)
T KOG1539|consen 365 ISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRF 444 (910)
T ss_pred hHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccc
Confidence 2223333443221 1112233
Q ss_pred ----CeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEE
Q 001202 258 ----DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1124)
Q Consensus 258 ----~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~ 332 (1124)
..+ +|++++.|.+...|+..|+|-+|++.. +-....+ |.+++|.++|+.++...-++.+++++.+|-++
T Consensus 445 ~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS-Gi~r~sf-----~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilk 518 (910)
T KOG1539|consen 445 KKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS-GIHRKSF-----GDSPAHKGEVTGLAVDGTNRLLVSAGADGILK 518 (910)
T ss_pred cccCcceEEEEEeccCceEEEeccCCeEEEEEccc-Ceeeccc-----ccCccccCceeEEEecCCCceEEEccCcceEE
Confidence 334 999999999999999999999999987 5433333 44567999999999988888999999999999
Q ss_pred EEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEE--ec-cceEE
Q 001202 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GKCCL 406 (1124)
Q Consensus 333 vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~--s~-~k~~~ 406 (1124)
.||..++.+..+++-. ..+..+..+... ..++.+. .+++.|..+.++.....||.++|..+ ++ ||.++
T Consensus 519 fw~f~~k~l~~~l~l~--~~~~~iv~hr~s----~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWli 592 (910)
T KOG1539|consen 519 FWDFKKKVLKKSLRLG--SSITGIVYHRVS----DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLI 592 (910)
T ss_pred EEecCCcceeeeeccC--CCcceeeeeehh----hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEE
Confidence 9999999888887653 345556555544 3333322 88899999999888899999999555 44 99999
Q ss_pred eeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE--EEE
Q 001202 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYD 479 (1124)
Q Consensus 407 s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v--lwd 479 (1124)
+++.|+++++||+.++.. .. -..-..|..++.|||+|.+||++..|+.- +|.
T Consensus 593 sasmD~tIr~wDlpt~~l--------------------ID-~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 593 SASMDSTIRTWDLPTGTL--------------------ID-GLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EeecCCcEEEEeccCcce--------------------ee-eEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 999999999999877654 11 12234578899999999999999888554 665
No 93
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.77 E-value=3.2e-17 Score=168.96 Aligned_cols=279 Identities=12% Similarity=0.133 Sum_probs=207.6
Q ss_pred ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcE
Q 001202 253 ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (1124)
Q Consensus 253 ~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I 331 (1124)
++||..++ -+.+|.+|.+|.+++.|.+..||-..+ ++.+.+.. | |+|.|+|+...-+.+++++|+.|.++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty~----G----HtGavW~~Did~~s~~liTGSAD~t~ 76 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTYD----G----HTGAVWCCDIDWDSKHLITGSADQTA 76 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecC-Cceeeeec----C----CCceEEEEEecCCcceeeecccccee
Confidence 47999999 999999999999999999999998776 88888888 7 99999999999999999999999999
Q ss_pred EEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEe--------eeEEEEeCC-------CCeEEEEecCCcceE
Q 001202 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--------TSMMQWDEY-------GYRLYAIEEGSSERV 396 (1124)
Q Consensus 332 ~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg--------~~i~~W~~~-------~~~l~~~~~~~~~~v 396 (1124)
++||+.+|+.+.+++- ...|..+.|++++ +.++-. +.+-+++.. +.+++.....+...+
T Consensus 77 kLWDv~tGk~la~~k~--~~~Vk~~~F~~~g----n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski 150 (327)
T KOG0643|consen 77 KLWDVETGKQLATWKT--NSPVKRVDFSFGG----NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI 150 (327)
T ss_pred EEEEcCCCcEEEEeec--CCeeEEEeeccCC----cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence 9999999999999876 4689999999988 433321 155566665 445455554445555
Q ss_pred --EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCC
Q 001202 397 --LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (1124)
Q Consensus 397 --~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~d 473 (1124)
..+.+ ++.+++|..||.+..|++.+|..- ..+-..|+..|+.+.+|||+.++++|+.|
T Consensus 151 t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~-------------------v~s~~~h~~~Ind~q~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 151 TSALWGPLGETIIAGHEDGSISIYDARTGKEL-------------------VDSDEEHSSKINDLQFSRDRTYFITGSKD 211 (327)
T ss_pred eeeeecccCCEEEEecCCCcEEEEEcccCcee-------------------eechhhhccccccccccCCcceEEecccC
Confidence 45666 899999999999999999887652 33344677899999999999999999999
Q ss_pred CeE-EEEcCCCcE-EEecCcCceeeeEEEEEEecCCEEEEEEEec---------CCCeEEEEEeeCC---CCCCcceEEE
Q 001202 474 GLI-LYDIRQKKW-RVFGDITQEQKIQSKGLLWLGKIIVVCNYID---------SSNTYELLFYPRY---HLDQSSLLCR 539 (1124)
Q Consensus 474 G~v-lwd~~sg~w-k~f~~~~~e~~~~v~gl~W~~~~liv~~~~~---------~~~~~elrly~~~---~ld~~~~l~~ 539 (1124)
.+. +||..+-.. |.|.. |..+++..+.-..+.+|.++.-+ +.+.+|-|+|..- .+.. .-.
T Consensus 212 ttakl~D~~tl~v~Kty~t---e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr---vkG 285 (327)
T KOG0643|consen 212 TTAKLVDVRTLEVLKTYTT---ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR---VKG 285 (327)
T ss_pred ccceeeeccceeeEEEeee---cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc---ccc
Confidence 999 999987432 33332 22233444545556666553321 1234566666551 1110 112
Q ss_pred eecCCccEEEEeeCCEEEEEEcCCeEEEEEEE
Q 001202 540 KSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (1124)
Q Consensus 540 ~~l~s~~l~l~~~~~~llv~~~d~~i~l~~~~ 571 (1124)
+.-|-..+.+.|.|........||.+++.+..
T Consensus 286 HFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 286 HFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 33344567788888877778889999998775
No 94
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=2.6e-17 Score=172.26 Aligned_cols=266 Identities=13% Similarity=0.150 Sum_probs=204.9
Q ss_pred CcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEc------CCC
Q 001202 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDL------AES 288 (1124)
Q Consensus 219 ~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~------~~~ 288 (1124)
++.+-++..+...++.+++.|.+..+|...++.++ .||.+.| |+.|++.+.++++|+.|++-.||.. ...
T Consensus 149 DGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~ 228 (481)
T KOG0300|consen 149 DGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSN 228 (481)
T ss_pred cceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCC
Confidence 33344555455667778889999999999999886 7999999 9999999999999999999999972 110
Q ss_pred -------C-------------------ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeee
Q 001202 289 -------A-------------------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM 342 (1124)
Q Consensus 289 -------~-------------------~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~ 342 (1124)
+ .--+++..+-. .-.+|.+.|.+..|-..|+.+++|+.|++..+||+.++.++
T Consensus 229 ~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~-~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v 307 (481)
T KOG0300|consen 229 NAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLM-RLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVV 307 (481)
T ss_pred CCCCCCCchhhhhcccccccccccccccCCceeeeeee-eeeccccceEehhhhcCcceeeeeeccccceeeeeccCcee
Confidence 0 00001110000 00249999999999999999999999999999999999999
Q ss_pred EEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCC-CeEEEEecCCcceEEEEec--cceEEeeccCCceee
Q 001202 343 STIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYA 416 (1124)
Q Consensus 343 ~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~-~~l~~~~~~~~~~v~~~s~--~k~~~s~s~d~~v~~ 416 (1124)
..|.|| ....+.++-+|.. ..+++.+ +-++||... -+-+.+.+||.+.|....| +..+++|+.|.++++
T Consensus 308 ~~LtGH-d~ELtHcstHptQ----rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKv 382 (481)
T KOG0300|consen 308 NILTGH-DSELTHCSTHPTQ----RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKV 382 (481)
T ss_pred ccccCc-chhccccccCCcc----eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEE
Confidence 999999 7889999999987 7777776 889999863 3446678899999965555 888999999999999
Q ss_pred eEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecC-cCce
Q 001202 417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQE 494 (1124)
Q Consensus 417 w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~-~~~e 494 (1124)
|++.+... |...+-...|++-+++|..+..+|.--.+..+ +||++..+...... .-|-
T Consensus 383 WdLrNMRs--------------------plATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqg 442 (481)
T KOG0300|consen 383 WDLRNMRS--------------------PLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQG 442 (481)
T ss_pred eeeccccC--------------------cceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccc
Confidence 99987665 54455566789999999999999999999999 99998877543321 1122
Q ss_pred eeeEEEEEEecCCEEE
Q 001202 495 QKIQSKGLLWLGKIIV 510 (1124)
Q Consensus 495 ~~~~v~gl~W~~~~li 510 (1124)
+.-.|...+|..+..+
T Consensus 443 HrRMV~c~AW~eehp~ 458 (481)
T KOG0300|consen 443 HRRMVTCCAWLEEHPA 458 (481)
T ss_pred cceeeeeeeccccCcc
Confidence 2223667788765443
No 95
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.8e-17 Score=195.10 Aligned_cols=243 Identities=15% Similarity=0.209 Sum_probs=165.6
Q ss_pred CCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCC---------------------------Cce---------------
Q 001202 255 GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES---------------------------ASL--------------- 291 (1124)
Q Consensus 255 gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~---------------------------~~~--------------- 291 (1124)
.|.++| |+.||+||++||+|++||.|+||.+-.. ...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 799999 9999999999999999999999997540 000
Q ss_pred e--EEEeeccCCC-------CCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 292 I--RTVSLYDWGY-------SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 292 ~--~~l~~~~~g~-------~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
. ..+......+ -.+|++.|.+++||-+ ++|.+++.|+|||+|++....|+++|.. .+.|++++|+|.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~H--ndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSH--NDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEec--CCeeEEEEecccC
Confidence 0 0000000000 1279999999999966 5899999999999999999999999963 7899999999987
Q ss_pred CCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCcccee
Q 001202 363 DCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (1124)
Q Consensus 363 ~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w 439 (1124)
+ ++++||+ ++++|++-..+.. .|.
T Consensus 422 D---ryFiSGSLD~KvRiWsI~d~~Vv-----------------------------~W~--------------------- 448 (712)
T KOG0283|consen 422 D---RYFISGSLDGKVRLWSISDKKVV-----------------------------DWN--------------------- 448 (712)
T ss_pred C---CcEeecccccceEEeecCcCeeE-----------------------------eeh---------------------
Confidence 4 5666655 5555554322111 111
Q ss_pred eecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCc-----CceeeeEEEEEEec---CCEEE
Q 001202 440 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDI-----TQEQKIQSKGLLWL---GKIIV 510 (1124)
Q Consensus 440 ~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~-----~~e~~~~v~gl~W~---~~~li 510 (1124)
.-..-|++++++|||++.++|+-+|.+ +|++..-+...-..+ ...+.-.|+|+... .+-++
T Consensus 449 ----------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vL 518 (712)
T KOG0283|consen 449 ----------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVL 518 (712)
T ss_pred ----------hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEE
Confidence 011348899999999999999999999 999877654321111 01111258898886 23344
Q ss_pred EEEEecCCCeEEEEEeeCCCCCCcceEEEee----cCCcc-EEEEeeCCEEEEEEcCCeEEEEEEE
Q 001202 511 VCNYIDSSNTYELLFYPRYHLDQSSLLCRKS----LLAKP-IVMDVYEDYILVTYRPFDVHIFHVK 571 (1124)
Q Consensus 511 v~~~~~~~~~~elrly~~~~ld~~~~l~~~~----l~s~~-l~l~~~~~~llv~~~d~~i~l~~~~ 571 (1124)
|. +++..||+|+.. ...++++.+ ..++. -.++..|.+++.++.|..+.+|++.
T Consensus 519 VT-----SnDSrIRI~d~~---~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 519 VT-----SNDSRIRIYDGR---DKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred Ee-----cCCCceEEEecc---chhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 44 344589999882 112222211 12222 2345678899999999999999885
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=6.3e-18 Score=192.14 Aligned_cols=222 Identities=17% Similarity=0.210 Sum_probs=186.8
Q ss_pred cCCcEEEEEecCCceEeeeccccce---------ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCC-ceeEEEe
Q 001202 228 SNGQLMSCSVSKKGLKLAEFIKIDK---------ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVS 296 (1124)
Q Consensus 228 ~dG~~~~~~~~d~~i~~wd~~~~~~---------~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~-~~~~~l~ 296 (1124)
|+|+++++++.|+.++.|+...... ...|.+.| .++...+++.++++|.|.+|++|+....+ .++.++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 7889999999999999998653221 25699999 88888999999999999999999998733 4555555
Q ss_pred eccCCCCCCCCCCeEEEEE-CCCCCEEEEEECCCcEEEEEcCCC--ee--------eEEec-cCCcCceeeeEEcCCCCC
Q 001202 297 LYDWGYSMDDTGPVSCIAW-TPDNSAFAVGWKSRGLTVWSVSGC--RL--------MSTIR-QISLSSISSPIVKPNQDC 364 (1124)
Q Consensus 297 ~~~~g~~~~h~g~V~~law-SPDG~~Lasgs~Dg~I~vWdv~~~--~l--------~~tl~-~h~~~~V~s~~~sp~~~~ 364 (1124)
.|+..|.|++. -++...+||||-|+.|.+||++++ ++ .+.+. |+ ..+|.+++..+.+
T Consensus 115 --------~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~-k~siYSLA~N~t~-- 183 (735)
T KOG0308|consen 115 --------THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP-KDSIYSLAMNQTG-- 183 (735)
T ss_pred --------cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC-ccceeeeecCCcc--
Confidence 39999999999 889999999999999999999876 22 23333 44 6778888888887
Q ss_pred CcceEEEee---eEEEEeCCCCeEEEEecCCcceEEE--Eec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccce
Q 001202 365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (1124)
Q Consensus 365 ~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~--~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~ 438 (1124)
..+++|+ .+++|++.+.+-++...||.+.|-+ ++. |..++|+|.||++++|++.+..+
T Consensus 184 --t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC-------------- 247 (735)
T KOG0308|consen 184 --TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC-------------- 247 (735)
T ss_pred --eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccce--------------
Confidence 7888887 7889999999999999999988843 344 99999999999999999988666
Q ss_pred eeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC
Q 001202 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 439 w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s 482 (1124)
..+|..|...|+++..+|+=.++.+||+||.+ .=|+.+
T Consensus 248 ------l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 248 ------LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred ------eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 67799999999999999999999999999999 777766
No 97
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.76 E-value=9.5e-16 Score=175.78 Aligned_cols=393 Identities=13% Similarity=0.111 Sum_probs=249.3
Q ss_pred cceeEEEEecC---CcEEEEEeCCCeEEEEEeeecCceeecCC----CCCCCccee----eEEEEeeeeeecccccceEE
Q 001202 68 GENLQAVWSPD---TKLIAVVTSSLYLHIFKVQITEKSIQIGG----KQPSGLFFI----KISLVLNEQLPFAEKGLSVS 136 (1124)
Q Consensus 68 G~~~~v~wSPD---g~~Lav~t~dg~l~i~~v~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~ 136 (1124)
..+.+++|+.- .-+||+++.|.+||||.+......-.... .....++.. .+.+..++...+.+++.-|.
T Consensus 192 DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~ 271 (764)
T KOG1063|consen 192 DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVY 271 (764)
T ss_pred hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceE
Confidence 34556777654 45899999999999999976541100000 000111211 22233333334456777777
Q ss_pred EEe--ecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEE
Q 001202 137 NIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (1124)
Q Consensus 137 ~i~--~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i 214 (1124)
++. +.+..|+.++.|.++.+ |....+... |.+ ...+-.+
T Consensus 272 sv~W~p~~~~LLSASaDksmii--W~pd~~tGi-----------------Wv~--------------------~vRlGe~ 312 (764)
T KOG1063|consen 272 SVWWHPEGLDLLSASADKSMII--WKPDENTGI-----------------WVD--------------------VVRLGEV 312 (764)
T ss_pred EEEEccchhhheecccCcceEE--EecCCccce-----------------EEE--------------------EEEeecc
Confidence 755 44556888899998876 554433111 000 0001111
Q ss_pred EecCCcceEEEEecCCcEEEEEecCCceEeeecccccee------cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCC
Q 001202 215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE 287 (1124)
Q Consensus 215 ~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~------~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~ 287 (1124)
..+..+-+.+.+++++..+++.+..+..++|.......| .||.+.| .++|+|.|.+|.+.+.|.|-|||---.
T Consensus 313 gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg 392 (764)
T KOG1063|consen 313 GGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG 392 (764)
T ss_pred cccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccc
Confidence 122233345566788888888788888888874333333 6999999 999999999999999999999987542
Q ss_pred CCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcC-----------C------------------
Q 001202 288 SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-----------G------------------ 338 (1124)
Q Consensus 288 ~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~-----------~------------------ 338 (1124)
.....+.+..++ -|-...+|++|-+....+++|.+.+.+|+++.. +
T Consensus 393 ~q~~wHEiaRPQ-----iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaL 467 (764)
T KOG1063|consen 393 RQQEWHEIARPQ-----IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPAL 467 (764)
T ss_pred cccceeeecccc-----cccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccc
Confidence 122234443332 377779999999877788899988999999852 0
Q ss_pred ---------------Ce---ee-----------------------------EEeccCCcCceeeeEEcCCCCCCcceEEE
Q 001202 339 ---------------CR---LM-----------------------------STIRQISLSSISSPIVKPNQDCKYEPLMS 371 (1124)
Q Consensus 339 ---------------~~---l~-----------------------------~tl~~h~~~~V~s~~~sp~~~~~~~~l~s 371 (1124)
+. +. ..+-|| ...|++++.+|++ +.++|
T Consensus 468 GLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH-GyEv~~l~~s~~g----nliAS 542 (764)
T KOG1063|consen 468 GLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH-GYEVYALAISPTG----NLIAS 542 (764)
T ss_pred cccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC-ceeEEEEEecCCC----CEEee
Confidence 00 00 001123 3467788888888 77777
Q ss_pred ee--------eEEEEeCCCCeEEEEecCCcceE--EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceee
Q 001202 372 GT--------SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (1124)
Q Consensus 372 g~--------~i~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~ 440 (1124)
+. .+++|+..+-.....+.+|+-.| +.|++ ++.+++.|.|.+..+|....+... ...
T Consensus 543 aCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~----------e~~-- 610 (764)
T KOG1063|consen 543 ACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD----------EFR-- 610 (764)
T ss_pred hhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccch----------hhh--
Confidence 65 67889988766666778898888 55666 999999999999999986433220 000
Q ss_pred ecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecC-cCceeeeEEEEEEec------CCEEEEE
Q 001202 441 HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLWL------GKIIVVC 512 (1124)
Q Consensus 441 ~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~-~~~e~~~~v~gl~W~------~~~liv~ 512 (1124)
-.....|.-.|+.+.|+||++++|+|++|.++ +|.....+-+.... ....-+..|+.+.|. +.++|+.
T Consensus 611 ----fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vav 686 (764)
T KOG1063|consen 611 ----FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAV 686 (764)
T ss_pred ----hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEE
Confidence 01245788889999999999999999999999 99987764222211 111112235566664 2234444
Q ss_pred EEecCCCeEEEEEeeCC
Q 001202 513 NYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 513 ~~~~~~~~~elrly~~~ 529 (1124)
+. ...+|-+|.+.
T Consensus 687 Gl----e~GeI~l~~~~ 699 (764)
T KOG1063|consen 687 GL----EKGEIVLWRRK 699 (764)
T ss_pred Ee----cccEEEEEecc
Confidence 33 23488888764
No 98
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8.1e-17 Score=189.91 Aligned_cols=245 Identities=20% Similarity=0.286 Sum_probs=188.7
Q ss_pred hhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCe
Q 001202 65 QREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKH 144 (1124)
Q Consensus 65 ~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~ 144 (1124)
.+.+..+.++|.|||..|.|+++||.|++|+...... .++ .+......|.+++....+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-------~P~---------------ti~~~g~~v~~ia~~s~~ 68 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-------EPE---------------TIDISGELVSSIACYSNH 68 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-------CCc---------------hhhccCceeEEEeecccc
Confidence 3556678999999999999999999999999865421 000 111134578899999999
Q ss_pred EEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEE
Q 001202 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1124)
Q Consensus 145 llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~ 224 (1124)
+++|+.+++|.++..+....... +..-..+++ .+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~i------------------------------------L~Rftlp~r----------~~ 102 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDTI------------------------------------LARFTLPIR----------DL 102 (933)
T ss_pred eEEeeccceEEEeeCCCCCccce------------------------------------eeeeeccce----------EE
Confidence 99999999999987664322211 111122343 34
Q ss_pred EEecCCcEEEEEecCCceEeeeccccc---eecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccC
Q 001202 225 VLYSNGQLMSCSVSKKGLKLAEFIKID---KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (1124)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~wd~~~~~---~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~ 300 (1124)
+++-+|+.++.|++|..+++.+..+.. ...+|...| ++.++|++.+||+.+-||+|++|++++ +.+..++.....
T Consensus 103 ~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k 181 (933)
T KOG1274|consen 103 AVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD-GILSKTLTGVDK 181 (933)
T ss_pred EEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc-chhhhhcccCCc
Confidence 556889999999999999988766542 247999999 999999999999999999999999998 777777663322
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEecc-CCcCceeeeEEcCCCCCCcceEEEee---eEE
Q 001202 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (1124)
Q Consensus 301 g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~-h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~ 376 (1124)
.........+..++|+|+|..+|....|+.|++++..+......++. +..+.++.+.|+|+| ++++++. .+.
T Consensus 182 ~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG----~YiAAs~~~g~I~ 257 (933)
T KOG1274|consen 182 DNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG----KYIAASTLDGQIL 257 (933)
T ss_pred cccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC----cEEeeeccCCcEE
Confidence 11122345678899999998899999999999999999999998887 334448999999999 9999876 899
Q ss_pred EEeCCC
Q 001202 377 QWDEYG 382 (1124)
Q Consensus 377 ~W~~~~ 382 (1124)
+|+.++
T Consensus 258 vWnv~t 263 (933)
T KOG1274|consen 258 VWNVDT 263 (933)
T ss_pred EEeccc
Confidence 999984
No 99
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.76 E-value=7.7e-18 Score=186.24 Aligned_cols=276 Identities=16% Similarity=0.136 Sum_probs=203.1
Q ss_pred eecccccceEEEEeec---CCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeec
Q 001202 126 LPFAEKGLSVSNIVSD---NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSD 202 (1124)
Q Consensus 126 ~~~~~~~~~v~~i~~d---~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~ 202 (1124)
..+.++...|+++... +..++.++-|+.|++|.--.. ... + .
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-~~~------------l----------------------r 252 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-RRC------------L----------------------R 252 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC-cce------------e----------------------h
Confidence 3456777777775543 345667778998888532211 111 1 1
Q ss_pred ccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee-cCCCCeE--EEEEccCC-CEEEEEecCC
Q 001202 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAV--CASIAPEQ-QILAVGTRRG 278 (1124)
Q Consensus 203 ~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~-~gh~~~v--~va~spdg-~lLAsGs~Dg 278 (1124)
...+|..+|.++.|+ .+|+.+++++-|..+++||.+++++. ..|.+.+ |+.|+||+ ..+.+|+.|+
T Consensus 253 tf~gH~k~Vrd~~~s----------~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ 322 (503)
T KOG0282|consen 253 TFKGHRKPVRDASFN----------NCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDK 322 (503)
T ss_pred hhhcchhhhhhhhcc----------ccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCC
Confidence 345777888776665 89999999999999999999999876 5666666 99999998 7899999999
Q ss_pred eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEE
Q 001202 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (1124)
Q Consensus 279 tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~ 358 (1124)
.|+.||+.. ++.++... .|-|+|..+.|-|+|+++++.++|++++||+......+.-+..++.....++..
T Consensus 323 ki~~wDiRs-~kvvqeYd--------~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~ 393 (503)
T KOG0282|consen 323 KIRQWDIRS-GKVVQEYD--------RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTL 393 (503)
T ss_pred cEEEEeccc-hHHHHHHH--------hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceec
Confidence 999999998 77665544 388999999999999999999999999999998887666555443446677888
Q ss_pred cCCCCCCcceEEEee---eEEEEeCCCC-eE--EEEecCCcc---eE-EEEec-cceEEeeccCCceeeeEeeecCCeEE
Q 001202 359 KPNQDCKYEPLMSGT---SMMQWDEYGY-RL--YAIEEGSSE---RV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLL 427 (1124)
Q Consensus 359 sp~~~~~~~~l~sg~---~i~~W~~~~~-~l--~~~~~~~~~---~v-~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~ 427 (1124)
+|++ ..++.-+ .+.++..... ++ -....||.. .+ +.|++ |+.+++|+.||.+..|+..+...
T Consensus 394 ~P~~----~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl--- 466 (503)
T KOG0282|consen 394 HPNG----KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL--- 466 (503)
T ss_pred CCCC----CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh---
Confidence 8987 4443222 3444443210 00 011223321 12 56777 99999999999999999655433
Q ss_pred EeecCCCccceeeecccceeeccCCCceEEEEEccCC-CEEEEEcCCCeE-EEE
Q 001202 428 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYD 479 (1124)
Q Consensus 428 l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG-~~lAvag~dG~v-lwd 479 (1124)
...+..|+.++..+.|.|-. ..+|++|-||.| +|+
T Consensus 467 -----------------~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 467 -----------------VSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -----------------hhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 56777899999999999864 589999999999 996
No 100
>PTZ00420 coronin; Provisional
Probab=99.76 E-value=3.4e-16 Score=187.68 Aligned_cols=218 Identities=11% Similarity=0.092 Sum_probs=159.9
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccc-----------eecCCCCeE-EEEEccCCCE-
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID-----------KELGSGDAV-CASIAPEQQI- 270 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~-----------~~~gh~~~v-~va~spdg~l- 270 (1124)
+.+|...|.+++|+|. ++.++++++.|+++++|+..+.. .+.+|.+.| +++|+|++..
T Consensus 70 L~gH~~~V~~lafsP~---------~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~i 140 (568)
T PTZ00420 70 LKGHTSSILDLQFNPC---------FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYI 140 (568)
T ss_pred EcCCCCCEEEEEEcCC---------CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeE
Confidence 4467778888777742 37889999999999999986431 236899999 9999999875
Q ss_pred EEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCc
Q 001202 271 LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL 350 (1124)
Q Consensus 271 LAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~ 350 (1124)
+|+|+.||+|+|||+.+ +.....+. |.+.|.+++|+|||..|++++.|+.|+|||+.++..+.++.+| .
T Consensus 141 LaSgS~DgtIrIWDl~t-g~~~~~i~---------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH-~ 209 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIEN-EKRAFQIN---------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH-D 209 (568)
T ss_pred EEEEeCCCeEEEEECCC-CcEEEEEe---------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc-c
Confidence 57999999999999987 65555554 5678999999999999999999999999999999999999888 3
Q ss_pred Cceee-----eEEcCCCCCCcceEEEee-------eEEEEeCCC-CeEEEEec--CCcceEE-EEec--cceEEeeccCC
Q 001202 351 SSISS-----PIVKPNQDCKYEPLMSGT-------SMMQWDEYG-YRLYAIEE--GSSERVL-IFSF--GKCCLNRGVSG 412 (1124)
Q Consensus 351 ~~V~s-----~~~sp~~~~~~~~l~sg~-------~i~~W~~~~-~~l~~~~~--~~~~~v~-~~s~--~k~~~s~s~d~ 412 (1124)
..+.+ ..|++++ ..+++++ ++++|+... .+.+.... .+...+. .+.. +..+++|+.|+
T Consensus 210 g~~~s~~v~~~~fs~d~----~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDD----NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred CCceeEEEEeeeEcCCC----CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 43332 2345665 6666643 489999984 44443322 2223332 2222 67788999999
Q ss_pred ceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCC
Q 001202 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (1124)
Q Consensus 413 ~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG 464 (1124)
++++|++..+... ....|. +..|++.++|.|..
T Consensus 286 tIr~~e~~~~~~~------------------~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 286 NCRYYQHSLGSIR------------------KVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred eEEEEEccCCcEE------------------eecccc-cCCCccceEEcccc
Confidence 9999998654221 012233 66788999999964
No 101
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.5e-15 Score=152.42 Aligned_cols=286 Identities=14% Similarity=0.161 Sum_probs=185.4
Q ss_pred CCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCc----------eeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEE
Q 001202 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESAS----------LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (1124)
Q Consensus 257 ~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~----------~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasg 325 (1124)
+.++ .|+|+|.|.+.|+|+...+.||.....-.. +...+-. ....|.|.|.|.+|||+|..||+|
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~k----r~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCK----RNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEee----eccccCccEEEEEecCccCeEEec
Confidence 4677 899999999999999999999876532110 0001110 112489999999999999999999
Q ss_pred ECCCcEEEEEcCCCeee-----EEeccCCcCceeeeEEcCCCCCCcceEEEee----eEEEEeCCCCeEEEEecCCcceE
Q 001202 326 WKSRGLTVWSVSGCRLM-----STIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSERV 396 (1124)
Q Consensus 326 s~Dg~I~vWdv~~~~l~-----~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~----~i~~W~~~~~~l~~~~~~~~~~v 396 (1124)
+.|++|++--.+...+. -.+..| ...|..++|--+.++....++|+. ++.+=+-..++-+....||.+.|
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmh-dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMH-DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI 186 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeec-CCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence 99999999766432211 122334 678899999766555557788765 55555677888889999999999
Q ss_pred EEE-ec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeecc---CCCceEEEEEccCCCEEEEEc
Q 001202 397 LIF-SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS---QNWPVQHVAASKDGMFLAVAG 471 (1124)
Q Consensus 397 ~~~-s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~---~~~~I~~va~SpdG~~lAvag 471 (1124)
+++ +. +-.+++|+.|.+++.|++.-...- -. +-..+.+ ....|.+++++|.|+.||+|-
T Consensus 187 lalyswn~~m~~sgsqdktirfwdlrv~~~v-~~---------------l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 187 LALYSWNGAMFASGSQDKTIRFWDLRVNSCV-NT---------------LDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred EEEEEecCcEEEccCCCceEEEEeeecccee-ee---------------ccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 665 44 778899999999999998654331 00 0011111 235689999999999999999
Q ss_pred CCCeE-EEEcCCCcE-EEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeCC-CCCCc-ceEEEeecCCccE
Q 001202 472 LHGLI-LYDIRQKKW-RVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQS-SLLCRKSLLAKPI 547 (1124)
Q Consensus 472 ~dG~v-lwd~~sg~w-k~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~~-~ld~~-~~l~~~~l~s~~l 547 (1124)
.|... +||++.+|- ..|.. +..++.+..+.-...|++.|.|+ -.|++-+.+ .|... .+...-+.....+
T Consensus 251 ~dssc~lydirg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd-----~~ikltdlqgdla~el~~~vv~ehkdk~i 323 (350)
T KOG0641|consen 251 ADSSCMLYDIRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYD-----MKIKLTDLQGDLAHELPIMVVAEHKDKAI 323 (350)
T ss_pred CCCceEEEEeeCCceeeeeCC--CccceeEEEeCCCceEEEEeccc-----ceEEEeecccchhhcCceEEEEeccCceE
Confidence 99999 999998873 23322 22223333344445789999773 256776654 22211 1111111222222
Q ss_pred EEE--eeCCEEEEEEcCCeEEEEEE
Q 001202 548 VMD--VYEDYILVTYRPFDVHIFHV 570 (1124)
Q Consensus 548 ~l~--~~~~~llv~~~d~~i~l~~~ 570 (1124)
..- +.+=..+..++|.+.++|.+
T Consensus 324 ~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 324 QCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred EEEecCccceeeeccCcceEEEecc
Confidence 221 11123444567778888864
No 102
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=1.7e-16 Score=174.80 Aligned_cols=267 Identities=15% Similarity=0.215 Sum_probs=196.3
Q ss_pred cceEEEEecCCcEEEEEecCCceEeeecccccee---------------------cCCCCeE-EEEEccCCCEEEEEecC
Q 001202 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---------------------LGSGDAV-CASIAPEQQILAVGTRR 277 (1124)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---------------------~gh~~~v-~va~spdg~lLAsGs~D 277 (1124)
...++++++|+++.++++.++++.-|+..+++.. .+|.+-+ |+++|+||++||+|+.|
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d 223 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRD 223 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCC
Confidence 3456777788888888888888888877655411 2677778 99999999999999999
Q ss_pred CeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeE
Q 001202 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 357 (1124)
Q Consensus 278 gtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~ 357 (1124)
..|.||+.++ .+++++++ | |.+.|.+++|--.-..|.+++.|+++++|++.....+.++-|| .+.|.++.
T Consensus 224 ~~v~Iw~~~t-~ehv~~~~----g----hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH-qd~v~~Id 293 (479)
T KOG0299|consen 224 RHVQIWDCDT-LEHVKVFK----G----HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH-QDGVLGID 293 (479)
T ss_pred ceEEEecCcc-cchhhccc----c----cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC-ccceeeec
Confidence 9999999998 88888877 6 9999999999988889999999999999999988888899898 67788776
Q ss_pred EcCCCCCCcceEEEee---eEEEEeCCC-CeEEEEecCCcceEEEEec--cceEEeeccCCceeeeEeeecCCeEEEeec
Q 001202 358 VKPNQDCKYEPLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQS 431 (1124)
Q Consensus 358 ~sp~~~~~~~~l~sg~---~i~~W~~~~-~~l~~~~~~~~~~v~~~s~--~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~ 431 (1124)
...-+ ..+..|. ++++|.+.. .+++ ..++.+.+-+..| ...++||+.+|.|.+|.+..... ++++.-
T Consensus 294 aL~re----R~vtVGgrDrT~rlwKi~eesqli--frg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp-lf~~~~ 366 (479)
T KOG0299|consen 294 ALSRE----RCVTVGGRDRTVRLWKIPEESQLI--FRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKP-LFTSRL 366 (479)
T ss_pred hhccc----ceEEeccccceeEEEeccccceee--eeCCCCCeeeEEEecccceeeccCCceEEEeeecccCc-eeEeec
Confidence 55443 3443343 999999743 3333 3455566666666 66789999999999999876544 332221
Q ss_pred -CCCccceeeecccce-eeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeE--EEEEEec-
Q 001202 432 -EDTDELKILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ--SKGLLWL- 505 (1124)
Q Consensus 432 -~~~~~~~w~~~~~p~-~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~--v~gl~W~- 505 (1124)
+.. .|. .-.+++..|++++..|....+|+|+.+|.+ +|-+..+--. + +...+-.+. |.+++|.
T Consensus 367 AHgv---------~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~-i-~~l~~ls~~GfVNsl~f~~ 435 (479)
T KOG0299|consen 367 AHGV---------IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA-I-NLLYSLSLVGFVNSLAFSN 435 (479)
T ss_pred cccc---------cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc-c-ceeeecccccEEEEEEEcc
Confidence 110 111 123344579999999999999999999999 9999887211 1 112222222 5577774
Q ss_pred -CCEEEEEEE
Q 001202 506 -GKIIVVCNY 514 (1124)
Q Consensus 506 -~~~liv~~~ 514 (1124)
++.++++..
T Consensus 436 sgk~ivagiG 445 (479)
T KOG0299|consen 436 SGKRIVAGIG 445 (479)
T ss_pred CCCEEEEecc
Confidence 556776633
No 103
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=1.4e-16 Score=166.92 Aligned_cols=242 Identities=19% Similarity=0.290 Sum_probs=166.9
Q ss_pred CCCeE-EEEEcc-CCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEE
Q 001202 256 SGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (1124)
Q Consensus 256 h~~~v-~va~sp-dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~v 333 (1124)
..|.| +++||| ...+++.||.||+||+|++...+....+.. ..|.++|.+++|+-||..+++|+.|+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~-------~~~~~PvL~v~WsddgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ-------QSHDGPVLDVCWSDDGSKVFSGGCDKQAKL 98 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhh-------hccCCCeEEEEEccCCceEEeeccCCceEE
Confidence 46788 999999 566788999999999999987444443221 249999999999999999999999999999
Q ss_pred EEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec-cceEEeec
Q 001202 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRG 409 (1124)
Q Consensus 334 Wdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s 409 (1124)
||+.+++ ..++..| ..+|..+.|-+.. .++.+++|+ +++.||.+....+.+..- .+++++.+. -..++-+.
T Consensus 99 wDL~S~Q-~~~v~~H-d~pvkt~~wv~~~--~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~~pm~vVat 173 (347)
T KOG0647|consen 99 WDLASGQ-VSQVAAH-DAPVKTCHWVPGM--NYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVLYPMAVVAT 173 (347)
T ss_pred EEccCCC-eeeeeec-ccceeEEEEecCC--CcceeEecccccceeecccCCCCeeeeeec-cceeeehhccCceeEEEe
Confidence 9999996 4455556 7899999987655 357899999 999999998888777644 567777776 33444455
Q ss_pred cCCceeeeEeeecCCe--------------EEEeecCCCccc-------eeeecccc-----eeeccCC---------Cc
Q 001202 410 VSGMTYARQVIYGEDR--------------LLVVQSEDTDEL-------KILHLNLP-----VSYISQN---------WP 454 (1124)
Q Consensus 410 ~d~~v~~w~l~~~~~~--------------l~l~~~~~~~~~-------~w~~~~~p-----~~~~~~~---------~~ 454 (1124)
.+..+.++.+..+... +-++...+...+ ..+.+.-| .++.-|. .+
T Consensus 174 a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 174 AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 5666666665332110 111111111000 01111111 1222222 36
Q ss_pred eEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecCCEEE
Q 001202 455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIV 510 (1124)
Q Consensus 455 I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~li 510 (1124)
|++++|+|.-..||++|.||+. .||-+.+ -|++..+.+.+.+.|..+.-.|.+.+
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhh-hhhhccCcCCCccceeEecCCCCEEE
Confidence 8899999999999999999999 9997664 36666566666555555544455443
No 104
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.74 E-value=1.8e-17 Score=179.98 Aligned_cols=261 Identities=16% Similarity=0.167 Sum_probs=200.1
Q ss_pred EeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEec
Q 001202 138 IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (1124)
Q Consensus 138 i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s 217 (1124)
+-.+.+.+..|+.|..|++|.-.++..... ..+.+..+.|++++|.
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~----------------------------------~tLaGs~g~it~~d~d 228 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSELI----------------------------------STLAGSLGNITSIDFD 228 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhhhh----------------------------------hhhhccCCCcceeeec
Confidence 334557888888888888744333321000 1345667788888887
Q ss_pred CCcceEEEEecCCcEEEEEecCCceEeeeccccce---ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeE
Q 001202 218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIR 293 (1124)
Q Consensus 218 ~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~---~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~ 293 (1124)
++|+.++..++|+..++|+....+. +.||++.| ++.|......+++|+.|.+|++||+.. ..+.+
T Consensus 229 ----------~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-~~C~k 297 (459)
T KOG0288|consen 229 ----------SDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-AYCSK 297 (459)
T ss_pred ----------CCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-hheec
Confidence 7788888888999999999876643 37999999 888887777799999999999999988 76666
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee
Q 001202 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1124)
Q Consensus 294 ~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~ 373 (1124)
++- -...+.+|..+ +..++||-.|++|+.||..+..+..+...++ .|+++..++++ ..+.+.+
T Consensus 298 t~l---------~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g----~~lLsss 360 (459)
T KOG0288|consen 298 TVL---------PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDG----LELLSSS 360 (459)
T ss_pred ccc---------ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc--ceeeEeeccCC----eEEeeec
Confidence 554 23345666665 6789999999999999999999988888864 89999999998 5565555
Q ss_pred ---eEEEEeCCCCeEEEEecC------CcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecc
Q 001202 374 ---SMMQWDEYGYRLYAIEEG------SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (1124)
Q Consensus 374 ---~i~~W~~~~~~l~~~~~~------~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~ 443 (1124)
++.+.+..++++...... ++-.-.+|+| +.++++||.||.+++|++..++..-.+
T Consensus 361 RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l--------------- 425 (459)
T KOG0288|consen 361 RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVL--------------- 425 (459)
T ss_pred CCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEe---------------
Confidence 888899988888776543 3323378999 789999999999999999887763111
Q ss_pred cceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EE
Q 001202 444 LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 478 (1124)
Q Consensus 444 ~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lw 478 (1124)
...+.+..|.+++|+|.|.+++++++++.+ +|
T Consensus 426 ---~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 426 ---SLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ---ccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 111223369999999999999999999998 88
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.74 E-value=5.5e-16 Score=169.21 Aligned_cols=229 Identities=13% Similarity=0.154 Sum_probs=189.7
Q ss_pred cCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCC
Q 001202 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (1124)
Q Consensus 228 ~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~ 303 (1124)
+.....++++.|.+.-+.|....+.+ .||...+ .+.++|+...+++++.|..|+||.+.. .+......
T Consensus 229 ~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~~~~------- 300 (506)
T KOG0289|consen 229 PSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPTSSR------- 300 (506)
T ss_pred CCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCccccc-------
Confidence 44467888889988888887766543 7999999 999999999999999999999999876 33332222
Q ss_pred CCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccC-CcCceeeeEEcCCCCCCcceEEEee---eEEEEe
Q 001202 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (1124)
Q Consensus 304 ~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h-~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~ 379 (1124)
.|.++|+.+.-.|.|.||.+++.||++...|..++.+++..... ..-.+++.+||||| ..+.+|. .+++|+
T Consensus 301 -~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg----Lifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 301 -PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG----LIFGTGTPDGVVKIWD 375 (506)
T ss_pred -cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc----eEEeccCCCceEEEEE
Confidence 39999999999999999999999999999999998877765442 23458999999999 7777776 889999
Q ss_pred CCCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceE
Q 001202 380 EYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (1124)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~ 456 (1124)
...+.-.....+|.+.|-.++| |-.+++++.|+.+++||++.... ++.-......+|.
T Consensus 376 lks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-------------------~kt~~l~~~~~v~ 436 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-------------------FKTIQLDEKKEVN 436 (506)
T ss_pred cCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-------------------cceeeccccccce
Confidence 9998888888999999988888 66899999999999999887654 1222223344799
Q ss_pred EEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEe
Q 001202 457 HVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (1124)
Q Consensus 457 ~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f 488 (1124)
+++|++.|+||+++|.|=.| +++-.++.|...
T Consensus 437 s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 437 SLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred eEEEcCCCCeEEeecceeEEEEEecccccceee
Confidence 99999999999999999999 999889999754
No 106
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=4.5e-16 Score=164.10 Aligned_cols=241 Identities=12% Similarity=0.233 Sum_probs=170.6
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCC--EEEEEECCCc
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRG 330 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~--~Lasgs~Dg~ 330 (1124)
..|..++ |+|++ ++++|+|+.|-+|+|||+.. ...+..+- .|.|.|+++.|.|+-. .|.+|++||.
T Consensus 40 ~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k-~~qlg~ll--------~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 40 SAHAGSITALAVS--GPYVASGSSDETIHIYDMRK-RKQLGILL--------SHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred cccccceeEEEec--ceeEeccCCCCcEEEEeccc-hhhhccee--------ccccceEEEEecCCcchhheeeecCCCc
Confidence 5688888 88875 78999999999999999987 44444443 2999999999999876 9999999999
Q ss_pred EEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEeecc
Q 001202 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGV 410 (1124)
Q Consensus 331 I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~ 410 (1124)
|.+|++..-.++.+++.| ...|+.++.+|.+ |.+++.+.
T Consensus 109 i~iw~~~~W~~~~slK~H-~~~Vt~lsiHPS~----------------------------------------KLALsVg~ 147 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLKAH-KGQVTDLSIHPSG----------------------------------------KLALSVGG 147 (362)
T ss_pred EEEEEcCCeEEeeeeccc-ccccceeEecCCC----------------------------------------ceEEEEcC
Confidence 999999999999999998 5668888888875 22356677
Q ss_pred CCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeEEEEcCCCcEEEecC
Q 001202 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGD 490 (1124)
Q Consensus 411 d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~vlwd~~sg~wk~f~~ 490 (1124)
|+.++.|++..|..... .-+.+.. ..+.|+|.|.+++++++++.-+|.+.+-+ +|..
T Consensus 148 D~~lr~WNLV~Gr~a~v-------------------~~L~~~a--t~v~w~~~Gd~F~v~~~~~i~i~q~d~A~--v~~~ 204 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFV-------------------LNLKNKA--TLVSWSPQGDHFVVSGRNKIDIYQLDNAS--VFRE 204 (362)
T ss_pred CceeeeehhhcCcccee-------------------eccCCcc--eeeEEcCCCCEEEEEeccEEEEEecccHh--Hhhh
Confidence 88888888877765210 1112222 22899999999999999997799887654 4443
Q ss_pred cCceeeeEEEEEEec-CCEEEEEEEecCCCeEEEEEeeCCC-CC-CcceEEEeecCCccEEEEeeCCEEEEEEcCCeEEE
Q 001202 491 ITQEQKIQSKGLLWL-GKIIVVCNYIDSSNTYELLFYPRYH-LD-QSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHI 567 (1124)
Q Consensus 491 ~~~e~~~~v~gl~W~-~~~liv~~~~~~~~~~elrly~~~~-ld-~~~~l~~~~l~s~~l~l~~~~~~llv~~~d~~i~l 567 (1124)
...+ ..+....|. +..+++|.. ...+++++.+. .. .....|...+..-....++++.+|+.+++||.|++
T Consensus 205 i~~~--~r~l~~~~l~~~~L~vG~d-----~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 205 IENP--KRILCATFLDGSELLVGGD-----NEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred hhcc--ccceeeeecCCceEEEecC-----CceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEE
Confidence 3222 224455664 567777732 24688888751 11 11223333333322233444446666999999999
Q ss_pred EEEEEeccc
Q 001202 568 FHVKLFGEL 576 (1124)
Q Consensus 568 ~~~~~~~~~ 576 (1124)
|++.++.+.
T Consensus 278 Wd~~~~~k~ 286 (362)
T KOG0294|consen 278 WDIDMETKK 286 (362)
T ss_pred EEccccccC
Confidence 999987554
No 107
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=3.3e-16 Score=165.19 Aligned_cols=217 Identities=16% Similarity=0.187 Sum_probs=166.7
Q ss_pred cCCcEEEEEecCCceEeeecccccee-----cCCC----CeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeE---EE
Q 001202 228 SNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSG----DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIR---TV 295 (1124)
Q Consensus 228 ~dG~~~~~~~~d~~i~~wd~~~~~~~-----~gh~----~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~---~l 295 (1124)
|+-.++++.+.+..|++||..+++.. .+|. .+.|++|||||..|..| ....|++||+..++..-. ++
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhh
Confidence 66677788888999999999988754 2333 34599999999999887 467999999965453222 22
Q ss_pred eeccCCCCCCCCCCeEEEEECCCC-CEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee-
Q 001202 296 SLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT- 373 (1124)
Q Consensus 296 ~~~~~g~~~~h~g~V~~lawSPDG-~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~- 373 (1124)
...+.| ..|-+.|++|||-. ..+|.|+.-..+-|+.-.++.++..+.+| ...|+.+.|.++| +.+.+|.
T Consensus 200 ~~~k~g----q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh-~gGvThL~~~edG----n~lfsGaR 270 (406)
T KOG2919|consen 200 TKGKFG----QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH-GGGVTHLQWCEDG----NKLFSGAR 270 (406)
T ss_pred hccccc----ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc-CCCeeeEEeccCc----Ceeccccc
Confidence 222233 57889999999954 59999999999999999999999999988 7899999999999 7888887
Q ss_pred ---eEEEEeCCCCeE-EEEecCC----cceE-EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecc
Q 001202 374 ---SMMQWDEYGYRL-YAIEEGS----SERV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (1124)
Q Consensus 374 ---~i~~W~~~~~~l-~~~~~~~----~~~v-~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~ 443 (1124)
.+..||+...+- +..+..| ..+| +.+.+ ++.+++|+.||.+++|++..-.+.
T Consensus 271 k~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~------------------ 332 (406)
T KOG2919|consen 271 KDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE------------------ 332 (406)
T ss_pred CCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc------------------
Confidence 899999986543 2233333 2344 55556 888999999999999998773331
Q ss_pred cceeeccCCCceEEEEEccCCCEEEEEcCC
Q 001202 444 LPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (1124)
Q Consensus 444 ~p~~~~~~~~~I~~va~SpdG~~lAvag~d 473 (1124)
+..+..+...++.++++|-=..+|+++..
T Consensus 333 -~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 333 -VSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred -ccccccccccccceecCcccceeeeccCc
Confidence 55666788889999999998888887743
No 108
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.72 E-value=6.2e-16 Score=171.66 Aligned_cols=285 Identities=14% Similarity=0.201 Sum_probs=192.1
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEE
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~ 332 (1124)
.+|+.+| .+++.|.|..+++|+-|-+|++||+.......+.++.. -+..+..|++++|||.|..|.+.+.....+
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l----~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQL----QPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhcc----CcccccccceeeecCCCCeEEEEecCccee
Confidence 6788999 99999999999999999999999997633333333321 123456799999999999888888888999
Q ss_pred EEEcCCCeeeEEec------------cCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCe----EEEEecCCc
Q 001202 333 VWSVSGCRLMSTIR------------QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR----LYAIEEGSS 393 (1124)
Q Consensus 333 vWdv~~~~l~~tl~------------~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~----l~~~~~~~~ 393 (1124)
|+|-.|...+...+ || ...+++.+|+|.. + +.+++++ +.++|+.+..+ .+..-....
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGH-ia~lt~g~whP~~--k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGH-IAELTCGCWHPDN--K-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCc-eeeeeccccccCc--c-cceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 99998876555443 45 6789999999986 2 3445544 99999987642 222222222
Q ss_pred ceE----EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccce--eeccCCC--ceEEEEEccCC
Q 001202 394 ERV----LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV--SYISQNW--PVQHVAASKDG 464 (1124)
Q Consensus 394 ~~v----~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~--~~~~~~~--~I~~va~SpdG 464 (1124)
.+| ..|++ ++.+++|+.||+|.+|+......+ |. .-.+|+. .|+|++||+||
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-------------------p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-------------------PVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccc-------------------cceEeeeccCCCCceeEEEecccc
Confidence 333 45566 889999999999999996322211 21 1225666 79999999999
Q ss_pred CEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecCC--EEEEEEEecC-CCeEEEEEeeCCCCCCcceEEEe
Q 001202 465 MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDS-SNTYELLFYPRYHLDQSSLLCRK 540 (1124)
Q Consensus 465 ~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~--~liv~~~~~~-~~~~elrly~~~~ld~~~~l~~~ 540 (1124)
++|++-|.|++. +||++.-+-.++.-..-...|.-+.+++.++ .+++|....+ .....|.+|++-.++ ...+.
T Consensus 377 ~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d---~v~ki 453 (641)
T KOG0772|consen 377 NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD---TVYKI 453 (641)
T ss_pred chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee---eEEEe
Confidence 999999999999 9999765433332222222234445566543 4555544332 233468899885443 23333
Q ss_pred ecCCccEEE---EeeCCEEEEEEcCCeEEEE
Q 001202 541 SLLAKPIVM---DVYEDYILVTYRPFDVHIF 568 (1124)
Q Consensus 541 ~l~s~~l~l---~~~~~~llv~~~d~~i~l~ 568 (1124)
.++...+.- .+-=+.+.+.+.||.+++|
T Consensus 454 ~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 454 DISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred cCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 343322211 1222568888999999988
No 109
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=1.4e-16 Score=181.32 Aligned_cols=231 Identities=16% Similarity=0.234 Sum_probs=176.7
Q ss_pred EEEecCCcEEEEEecCCceEeeeccccce-----ecCCCCeE-EEEE-ccCCCEEEEEecCCeEEEEEcCCCCc-eeEEE
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAV-CASI-APEQQILAVGTRRGVVELYDLAESAS-LIRTV 295 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~~-----~~gh~~~v-~va~-spdg~lLAsGs~DgtV~vwd~~~~~~-~~~~l 295 (1124)
++..-+|+.+++++.|.++++|+...... +..|.+.| |+++ .++..++|+|+-|+.|.|||++.... .+.++
T Consensus 79 iiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~ 158 (735)
T KOG0308|consen 79 IILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASF 158 (735)
T ss_pred HHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhc
Confidence 33447888999999999999999876632 26799999 9999 88899999999999999999987322 22222
Q ss_pred eeccC-CCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee-
Q 001202 296 SLYDW-GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT- 373 (1124)
Q Consensus 296 ~~~~~-g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~- 373 (1124)
.-..- ....++..+|.+++-.|.|..+++|+..+-+++||..++..+..|+|| +..|..+..+++| ..++|++
T Consensus 159 n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH-TdNVr~ll~~dDG----t~~ls~sS 233 (735)
T KOG0308|consen 159 NNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH-TDNVRVLLVNDDG----TRLLSASS 233 (735)
T ss_pred cccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc-ccceEEEEEcCCC----CeEeecCC
Confidence 10000 111258899999999999999999999999999999999999999998 8899999999999 7788776
Q ss_pred --eEEEEeCCCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceee
Q 001202 374 --SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 448 (1124)
Q Consensus 374 --~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~ 448 (1124)
++++|+.+..+++.+..-|.+.+|++.. -+.+.+|+.|+.+..-++.......++.
T Consensus 234 DgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic------------------- 294 (735)
T KOG0308|consen 234 DGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC------------------- 294 (735)
T ss_pred CceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee-------------------
Confidence 9999999999999999999999988766 4567789999988776655533222111
Q ss_pred ccCCCceEEEEEccCCCEEEEEcCCCeE-EEE
Q 001202 449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (1124)
Q Consensus 449 ~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd 479 (1124)
....||..+..+...+-+-+++.|+.| -|.
T Consensus 295 -k~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 295 -KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred -cCCCchhhhhhccccCCceeeeccccceecC
Confidence 223355555555444444667777766 554
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.71 E-value=8.5e-16 Score=167.74 Aligned_cols=216 Identities=18% Similarity=0.270 Sum_probs=172.2
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCe
Q 001202 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~ 340 (1124)
++..+|....+.+|+.|.++-++|... ++.+.+++ | |+-.|+.+.++|+...+++++.|..|+||++....
T Consensus 224 ald~~~s~~~ilTGG~d~~av~~d~~s-~q~l~~~~----G----h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 224 ALDIIPSSSKILTGGEDKTAVLFDKPS-NQILATLK----G----HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred EEeecCCCCcceecCCCCceEEEecch-hhhhhhcc----C----cceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence 677777778999999999999999987 77788887 7 99999999999999999999999999999998877
Q ss_pred eeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEE---eCCCCeEEEEecCCcce--E--EEEec-cceEEeeccCC
Q 001202 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQW---DEYGYRLYAIEEGSSER--V--LIFSF-GKCCLNRGVSG 412 (1124)
Q Consensus 341 l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W---~~~~~~l~~~~~~~~~~--v--~~~s~-~k~~~s~s~d~ 412 (1124)
.....+-| ...|+.+..+|.+ +++++.+....| +..++..+......... + .+|.+ |-.+.+|..|+
T Consensus 295 ~~~~~~~h-~~~V~~ls~h~tg----eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~ 369 (506)
T KOG0289|consen 295 EPTSSRPH-EEPVTGLSLHPTG----EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDG 369 (506)
T ss_pred Cccccccc-cccceeeeeccCC----cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCc
Confidence 66666667 8899999999999 999988844444 55666666554432233 3 56677 77788999999
Q ss_pred ceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCc
Q 001202 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDI 491 (1124)
Q Consensus 413 ~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~ 491 (1124)
.+++|++..+.. ...|-+|.+||+.++|+.+|-|||++..||.| +||++.-+ .|...
T Consensus 370 ~vkiwdlks~~~--------------------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--n~kt~ 427 (506)
T KOG0289|consen 370 VVKIWDLKSQTN--------------------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK--NFKTI 427 (506)
T ss_pred eEEEEEcCCccc--------------------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc--cccee
Confidence 999999887665 56778899999999999999999999999988 99997543 44332
Q ss_pred CceeeeEEE--EEEecCCEEEEE
Q 001202 492 TQEQKIQSK--GLLWLGKIIVVC 512 (1124)
Q Consensus 492 ~~e~~~~v~--gl~W~~~~liv~ 512 (1124)
.-+..+.+. .+.-.+.+++++
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred eccccccceeEEEcCCCCeEEee
Confidence 222222344 444467888876
No 111
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.1e-14 Score=154.65 Aligned_cols=268 Identities=14% Similarity=0.208 Sum_probs=188.5
Q ss_pred CCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEec--CCe
Q 001202 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTR--RGV 279 (1124)
Q Consensus 206 ~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~--Dgt 279 (1124)
.....|.+++|+ +||..+++++.|.+++++|..++++. ..+.-.+ .+.|-.....+.-++. |.+
T Consensus 12 ~~~~~i~sl~fs----------~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 12 ETNGKINSLDFS----------DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred cCCCceeEEEec----------CCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence 456788888887 88999999899999999999888764 2233355 6777666555555554 889
Q ss_pred EEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEc
Q 001202 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (1124)
Q Consensus 280 V~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~s 359 (1124)
||.-++.+ .+.++.+. | |+..|++++.+|-+..+.|++.|++|++||+...++..-+.- ..-..++|.
T Consensus 82 IryLsl~d-NkylRYF~----G----H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---~~~pi~AfD 149 (311)
T KOG1446|consen 82 IRYLSLHD-NKYLRYFP----G----HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---SGRPIAAFD 149 (311)
T ss_pred eEEEEeec-CceEEEcC----C----CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec---CCCcceeEC
Confidence 99999998 88899888 7 999999999999999999999999999999987666554432 223456788
Q ss_pred CCCCCCcceEEEee---eEEEEeCCCC-----eEEEEecCCcceE--EEEec-cceEEeeccCCceeeeEeeecCCeEEE
Q 001202 360 PNQDCKYEPLMSGT---SMMQWDEYGY-----RLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLV 428 (1124)
Q Consensus 360 p~~~~~~~~l~sg~---~i~~W~~~~~-----~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l 428 (1124)
|.| -.++.+. .++++|.+.+ +.+....+...+. +.|++ ||.++-....+.+++-+...|.-
T Consensus 150 p~G----LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~---- 221 (311)
T KOG1446|consen 150 PEG----LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV---- 221 (311)
T ss_pred CCC----cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE----
Confidence 888 5665544 7888887653 1222221222333 56666 88887766666676666555542
Q ss_pred eecCCCccceeeecccceeeccC----CCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEE-ecCcCceeeeEEEEE
Q 001202 429 VQSEDTDELKILHLNLPVSYISQ----NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV-FGDITQEQKIQSKGL 502 (1124)
Q Consensus 429 ~~~~~~~~~~w~~~~~p~~~~~~----~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~-f~~~~~e~~~~v~gl 502 (1124)
+.++.++ +-| -..+|+|||+++.+|+.||++ +|++.+++-.. +... +...+..+
T Consensus 222 ----------------~~tfs~~~~~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~---~~~~~~~~ 281 (311)
T KOG1446|consen 222 ----------------KSTFSGYPNAGNLP-LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP---NGGPVSCV 281 (311)
T ss_pred ----------------eeeEeeccCCCCcc-eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC---CCCCcccc
Confidence 2222222 223 468899999999999999999 99999986432 2111 12234556
Q ss_pred EecCCEEEEEEEecCCCeEEEEEeeC
Q 001202 503 LWLGKIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 503 ~W~~~~liv~~~~~~~~~~elrly~~ 528 (1124)
.|.+.+.+.+.. ..+|-+|-.
T Consensus 282 ~fnP~~~mf~sa-----~s~l~fw~p 302 (311)
T KOG1446|consen 282 RFNPRYAMFVSA-----SSNLVFWLP 302 (311)
T ss_pred ccCCceeeeeec-----CceEEEEec
Confidence 788887776632 346777744
No 112
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.70 E-value=1.7e-15 Score=173.88 Aligned_cols=213 Identities=16% Similarity=0.254 Sum_probs=170.3
Q ss_pred cCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCC
Q 001202 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (1124)
Q Consensus 228 ~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~ 303 (1124)
.|+-.+++++.|.++.+|........ .||..-| |++...++. +++||.|.|+++|.... +...+. |
T Consensus 69 ~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~----g-- 138 (745)
T KOG0301|consen 69 SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQ----G-- 138 (745)
T ss_pred ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccC----C--
Confidence 45556778889999998877665543 7999999 788888887 99999999999998743 444455 5
Q ss_pred CCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeC
Q 001202 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE 380 (1124)
Q Consensus 304 ~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~ 380 (1124)
|+.+|++++.-|++ .++||+.|++|++|.- +.++.+|.|| ++-|.++++-++. .++|++ .++.|+.
T Consensus 139 --H~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gH-tD~VRgL~vl~~~-----~flScsNDg~Ir~w~~ 207 (745)
T KOG0301|consen 139 --HTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGH-TDCVRGLAVLDDS-----HFLSCSNDGSIRLWDL 207 (745)
T ss_pred --cchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccc-hhheeeeEEecCC-----CeEeecCCceEEEEec
Confidence 99999999999998 8899999999999975 7789999998 8999999998875 345554 8999999
Q ss_pred CCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEE
Q 001202 381 YGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (1124)
Q Consensus 381 ~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~ 457 (1124)
+++.+....||..-+++++. ...++|++.|+++++|.... . -+.+++|. -.|++
T Consensus 208 -~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e--~--------------~q~I~lPt------tsiWs 264 (745)
T KOG0301|consen 208 -DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE--C--------------VQVITLPT------TSIWS 264 (745)
T ss_pred -cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc--e--------------EEEEecCc------cceEE
Confidence 55666677799999988884 67889999999999998541 1 12233343 25788
Q ss_pred EEEccCCCEEEEEcCCCeE-EEEcCCCcE
Q 001202 458 VAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (1124)
Q Consensus 458 va~SpdG~~lAvag~dG~v-lwd~~sg~w 485 (1124)
+.+=++|. +++||.||.+ +|.....||
T Consensus 265 a~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 265 AKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 88888886 6789999999 999876665
No 113
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.70 E-value=7.3e-16 Score=170.12 Aligned_cols=221 Identities=19% Similarity=0.240 Sum_probs=168.8
Q ss_pred EEEEecCCcEEEEEecCCceEeeecccccee-----cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEe
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS 296 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~-----~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~ 296 (1124)
.+-+++||+.+++++.-.++.+||...+... ....-+. .+++|||.++..+++.||.|.|||+.+ ...++.+.
T Consensus 470 SckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn-q~~Vrqfq 548 (705)
T KOG0639|consen 470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN-QTLVRQFQ 548 (705)
T ss_pred eeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc-ceeeeccc
Confidence 3556699999999999999999998765332 1112234 779999999999999999999999998 78888888
Q ss_pred eccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee-eE
Q 001202 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SM 375 (1124)
Q Consensus 297 ~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~-~i 375 (1124)
| |+..+.||..|+||..|-+|+-|.+||.||+..++...... -.+.|.++..+|.+ +.++-|- ..
T Consensus 549 ----G----htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~----dWlavGMens 614 (705)
T KOG0639|consen 549 ----G----HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTG----DWLAVGMENS 614 (705)
T ss_pred ----C----CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCc----cceeeecccC
Confidence 7 99999999999999999999999999999998876433221 14678888888988 6666554 33
Q ss_pred EEEe--CCCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeecc
Q 001202 376 MQWD--EYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (1124)
Q Consensus 376 ~~W~--~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~ 450 (1124)
.+|- ..+.+-+.. .-|..-|+.+.| |+..++.+.|+....|..-+|.. ... ..
T Consensus 615 ~vevlh~skp~kyql-hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas--------------------iFq-sk 672 (705)
T KOG0639|consen 615 NVEVLHTSKPEKYQL-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--------------------IFQ-SK 672 (705)
T ss_pred cEEEEecCCccceee-cccccEEEEEEecccCceeeecCchhhhhhccCccccc--------------------eee-cc
Confidence 3332 222222222 235667766666 99999999999999998766655 111 12
Q ss_pred CCCceEEEEEccCCCEEEEEcCCCeE-EEEc
Q 001202 451 QNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 451 ~~~~I~~va~SpdG~~lAvag~dG~v-lwd~ 480 (1124)
.+.+|.++.+|.|.+|+++|+.|..+ +|.+
T Consensus 673 E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 35689999999999999999999888 8875
No 114
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.70 E-value=2.1e-16 Score=168.94 Aligned_cols=249 Identities=17% Similarity=0.177 Sum_probs=179.5
Q ss_pred cCCCCeE-EEEEccCC-CEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcE
Q 001202 254 LGSGDAV-CASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg-~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I 331 (1124)
.||.+.| |+|=+|.. ..+|+|+.||.|++||+.. ..+..++. . |.|.|..|+++. ..+++++.|++|
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-R~~~~~f~----A----H~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-RECIRTFK----A----HEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhh-hhhhheee----c----ccCceeeEEecc--cceEEecCCcce
Confidence 5899999 99999987 8899999999999999988 77788887 3 999999999987 788999999999
Q ss_pred EEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee-eEEEEeCCCCeEEEEecCCcceEEEEe--c--cceEE
Q 001202 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERVLIFS--F--GKCCL 406 (1124)
Q Consensus 332 ~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~-~i~~W~~~~~~l~~~~~~~~~~v~~~s--~--~k~~~ 406 (1124)
+.|.+.+. ...++.+ .+.+..+.-+..+ ..+++++ .+-+|+..-...+....-..+.|.+++ + ...++
T Consensus 132 K~wk~~~~-p~~tilg--~s~~~gIdh~~~~----~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 132 KQWKIDGP-PLHTILG--KSVYLGIDHHRKN----SVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred eeeeccCC-cceeeec--ccccccccccccc----ccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 99999885 6666654 3344444333332 5556655 888999987666665544456664444 4 34566
Q ss_pred eeccCCceeeeEeeecCCeEEEeecCCCcccee---------------------eecccc-eeeccCCCceEEEEEccCC
Q 001202 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI---------------------LHLNLP-VSYISQNWPVQHVAASKDG 464 (1124)
Q Consensus 407 s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w---------------------~~~~~p-~~~~~~~~~I~~va~SpdG 464 (1124)
+++.|+++.++|+.++..---++.+--+..+.| ..++-| ..+.+|...|..+.|||.|
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG 284 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG 284 (433)
T ss_pred eeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc
Confidence 777999999999887654222222211112222 222333 4677899999999999999
Q ss_pred CEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeE-EEEEEecC--CEEEEEEEecCCCeEEEEEeeC
Q 001202 465 MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ-SKGLLWLG--KIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 465 ~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~-v~gl~W~~--~~liv~~~~~~~~~~elrly~~ 528 (1124)
+-+++||.|.+| ||..+.+.-+ +.-+.+-|. |.++.|.. .++++| +++..+|+|..
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SR---diYhtkRMq~V~~Vk~S~Dskyi~SG-----Sdd~nvRlWka 344 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSR---DIYHTKRMQHVFCVKYSMDSKYIISG-----SDDGNVRLWKA 344 (433)
T ss_pred chhccccccceEEEeecCCCcch---hhhhHhhhheeeEEEEeccccEEEec-----CCCcceeeeec
Confidence 999999999999 9999876522 223333344 77888964 466665 34457999965
No 115
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.2e-15 Score=155.64 Aligned_cols=238 Identities=19% Similarity=0.186 Sum_probs=173.7
Q ss_pred CCcEEEEEecCCceEeeeccccce------ecCCCCeE-EEEEcc--CCCEEEEEecCCeEEEEEcCCCCceeEEEeecc
Q 001202 229 NGQLMSCSVSKKGLKLAEFIKIDK------ELGSGDAV-CASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1124)
Q Consensus 229 dG~~~~~~~~d~~i~~wd~~~~~~------~~gh~~~v-~va~sp--dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~ 299 (1124)
-|+.+++++.|+++|+........ +.||.++| .++|.+ -|.+||+++.||.|.||.-.. +.-.+ .. +
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~-g~w~k-~~--e 97 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN-GRWTK-AY--E 97 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC-Cchhh-hh--h
Confidence 388999999999999987765432 37999999 998865 589999999999999999766 43221 11 1
Q ss_pred CCCCCCCCCCeEEEEECCCCC--EEEEEECCCcEEEEEcCCC--eeeEEeccCCcCceeeeEEcCCCC----------CC
Q 001202 300 WGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQD----------CK 365 (1124)
Q Consensus 300 ~g~~~~h~g~V~~lawSPDG~--~Lasgs~Dg~I~vWdv~~~--~l~~tl~~h~~~~V~s~~~sp~~~----------~~ 365 (1124)
-..|.+.|++|+|.|.+. .||.|+.||.|.|.+..+. -....+...|.-.|+++++.|... .+
T Consensus 98 ---~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~ 174 (299)
T KOG1332|consen 98 ---HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAK 174 (299)
T ss_pred ---hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccc
Confidence 124999999999999754 8999999999999988543 333344444477899999988732 12
Q ss_pred cceEEEee---eEEEEeCCCCe--EEEEecCCcceE--EEEec-----cceEEeeccCCceeeeEeeecCCeEEEeecCC
Q 001202 366 YEPLMSGT---SMMQWDEYGYR--LYAIEEGSSERV--LIFSF-----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (1124)
Q Consensus 366 ~~~l~sg~---~i~~W~~~~~~--l~~~~~~~~~~v--~~~s~-----~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~ 433 (1124)
-..++||. .+++|..+.++ +-..+.+|.+.| ++..| ...++|++.|+++.+|... .+..
T Consensus 175 ~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~-~e~e-------- 245 (299)
T KOG1332|consen 175 VKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD-EEYE-------- 245 (299)
T ss_pred cceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec-CccC--------
Confidence 23477776 89999887652 233467888877 44444 3468999999999999865 2210
Q ss_pred CccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcC-CCcEEEecC
Q 001202 434 TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR-QKKWRVFGD 490 (1124)
Q Consensus 434 ~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~-sg~wk~f~~ 490 (1124)
.|+ +..+.....++..++||+.|+.||+++.|..+ +|--+ .|+|+..+.
T Consensus 246 ----~wk----~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 246 ----PWK----KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred ----ccc----ccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEccc
Confidence 121 11122345679999999999999999999999 99765 568886543
No 116
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=6.3e-16 Score=179.22 Aligned_cols=259 Identities=17% Similarity=0.249 Sum_probs=177.0
Q ss_pred ceEEEEeeCCeEEEEEcCCcEEEEecCCCce-eEEEEeeChHHHhhhcceeEEEEec-CCcEEEEEeCCCeEEEEEeeec
Q 001202 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKV-RLGKYKRDSESVQREGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQIT 99 (1124)
Q Consensus 22 ~~iv~fS~dg~llA~~~~~~l~IW~~~~~~~-~l~~~~r~~~sl~~~G~~~~v~wSP-Dg~~Lav~t~dg~l~i~~v~~~ 99 (1124)
..+|..++|...+++++...+.|+-.+ |.. .+....|-......+-....|.|.. ++++|||++++|.|.+||+...
T Consensus 42 ~nAIs~nr~~~qiv~AGrs~lklyai~-~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRSLLKLYAIN-PNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred cceEeecCCcceeEEecccceeeEeeC-cccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 344666777778999999999999886 432 2222222111222344556789975 7789999999999999999763
Q ss_pred C--ceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEe--e-cCCeEEEEecCCcEEEEeccCccccceeeccCCC
Q 001202 100 E--KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--S-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSN 174 (1124)
Q Consensus 100 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~-d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~ 174 (1124)
. +.++. +..+.-++.++- + -...++.|+.||.|+.|+........
T Consensus 121 ~rnk~l~~----------------------f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~-------- 170 (839)
T KOG0269|consen 121 IRNKLLTV----------------------FNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS-------- 170 (839)
T ss_pred ccchhhhH----------------------hhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc--------
Confidence 2 21110 111112222222 1 24567889999999985443221111
Q ss_pred CccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee-
Q 001202 175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE- 253 (1124)
Q Consensus 175 ~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~- 253 (1124)
......-.|+++.|+|.. |..++++.+.|.+++||...+.++
T Consensus 171 ----------------------------t~~~nSESiRDV~fsp~~---------~~~F~s~~dsG~lqlWDlRqp~r~~ 213 (839)
T KOG0269|consen 171 ----------------------------TFRSNSESIRDVKFSPGY---------GNKFASIHDSGYLQLWDLRQPDRCE 213 (839)
T ss_pred ----------------------------cccccchhhhceeeccCC---------CceEEEecCCceEEEeeccCchhHH
Confidence 122345678899999854 677777788889999999877654
Q ss_pred ---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCC-CceeEEEeeccCCCCCCCCCCeEEEEECCCCC-EEEEEE-
Q 001202 254 ---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGW- 326 (1124)
Q Consensus 254 ---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~-~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~-~Lasgs- 326 (1124)
..|.++| |+.|+|++.+||+|+.|++|+||++.+. ...+.++. ...+|.+|+|.|+-. .||+++
T Consensus 214 ~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn---------Tiapv~rVkWRP~~~~hLAtcsm 284 (839)
T KOG0269|consen 214 KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN---------TIAPVGRVKWRPARSYHLATCSM 284 (839)
T ss_pred HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe---------ecceeeeeeeccCccchhhhhhc
Confidence 6899999 9999999999999999999999999852 23444554 467899999999865 677766
Q ss_pred -CCCcEEEEEcCCCe-eeEEeccCCcCceeeeEE
Q 001202 327 -KSRGLTVWSVSGCR-LMSTIRQISLSSISSPIV 358 (1124)
Q Consensus 327 -~Dg~I~vWdv~~~~-l~~tl~~h~~~~V~s~~~ 358 (1124)
.|-.|.|||+...- +..++..| .+.++.++|
T Consensus 285 v~dtsV~VWDvrRPYIP~~t~~eH-~~~vt~i~W 317 (839)
T KOG0269|consen 285 VVDTSVHVWDVRRPYIPYATFLEH-TDSVTGIAW 317 (839)
T ss_pred cccceEEEEeeccccccceeeecc-Cccccceec
Confidence 47899999997653 45566666 454555544
No 117
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.69 E-value=1.7e-13 Score=152.14 Aligned_cols=402 Identities=14% Similarity=0.094 Sum_probs=245.9
Q ss_pred eEEEEeeC--CeEEEEEcCC---cEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEee
Q 001202 23 QIIYFKVN--NGLLLIASPC---HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQ 97 (1124)
Q Consensus 23 ~iv~fS~d--g~llA~~~~~---~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~ 97 (1124)
-.|+||+. |.++++..++ -+.+||. |....++..+-+ ...+..+.|-|-+..+.+....|++.+|+..
T Consensus 158 ~~vaFsk~~~G~~l~~vD~s~~h~lSVWdW-qk~~~~~~vk~s------ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~ 230 (626)
T KOG2106|consen 158 TCVAFSKINGGSLLCAVDDSNPHMLSVWDW-QKKAKLGPVKTS------NEVVFLATFHPTDPNLIITCGKGHLYFWTLR 230 (626)
T ss_pred eeeeecccCCCceEEEecCCCccccchhhc-hhhhccCcceec------cceEEEEEeccCCCcEEEEeCCceEEEEEcc
Confidence 34788877 6688887654 5899999 465555544432 2335678999998888888899999999887
Q ss_pred ecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecC-CeEEEEecCCcEEEEeccCccccceeeccCCCCc
Q 001202 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (1124)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~ 176 (1124)
.+.-.-..+... +.....|.|+.... +.++.|-++|.+.+|+-.+.... .+...++..+
T Consensus 231 ~~~l~k~~~~fe-------------------k~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~-k~~~aH~ggv 290 (626)
T KOG2106|consen 231 GGSLVKRQGIFE-------------------KREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRIS-KQVHAHDGGV 290 (626)
T ss_pred CCceEEEeeccc-------------------cccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEE-eEeeecCCce
Confidence 653110000000 00112466666543 45677778899887543222111 1111233333
Q ss_pred cccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce--ec
Q 001202 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--EL 254 (1124)
Q Consensus 177 ~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~--~~ 254 (1124)
+++..+. ++.+.+++.+. ....|...-..++.++........=++.+.+.-++.+...+.+-.-...++-. .+
T Consensus 291 ~~L~~lr---~GtllSGgKDR--ki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~ 365 (626)
T KOG2106|consen 291 FSLCMLR---DGTLLSGGKDR--KIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ 365 (626)
T ss_pred EEEEEec---CccEeecCccc--eEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE
Confidence 3333222 22233322221 11223332233333333322222223333333355555555444333333222 27
Q ss_pred CCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEE
Q 001202 255 GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (1124)
Q Consensus 255 gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~v 333 (1124)
||.+.. .++.+|+..++++++.|+.|++|+ + .++.-+.. -..++.|+.|.|.| .+|.|...|.+.|
T Consensus 366 gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~~---------~~d~~~~~~fhpsg-~va~Gt~~G~w~V 432 (626)
T KOG2106|consen 366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWTKI---------IEDPAECADFHPSG-VVAVGTATGRWFV 432 (626)
T ss_pred ecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEEEE---------ecCceeEeeccCcc-eEEEeeccceEEE
Confidence 999988 999999999999999999999999 2 34443333 24568999999999 9999999999999
Q ss_pred EEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeC--CCCeEEEEecCCcceEEEEec---cceE
Q 001202 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE--YGYRLYAIEEGSSERVLIFSF---GKCC 405 (1124)
Q Consensus 334 Wdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~--~~~~l~~~~~~~~~~v~~~s~---~k~~ 405 (1124)
-|.++..++..-. . ..+++.++|+|+| .+++-|+ .+-++.+ ++.+......-+...|..+++ ++.+
T Consensus 433 ~d~e~~~lv~~~~-d-~~~ls~v~ysp~G----~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 433 LDTETQDLVTIHT-D-NEQLSVVRYSPDG----AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFL 506 (626)
T ss_pred EecccceeEEEEe-c-CCceEEEEEcCCC----CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceE
Confidence 9999966554433 3 6789999999999 8888777 4445543 333333333333356655555 7788
Q ss_pred EeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeec----cCCCceEEEEEccCCCEEEEEcCCCeE-EEEc
Q 001202 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI----SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 406 ~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~----~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~ 480 (1124)
.+.+.|-.+..|. .+..+. .....+++|-...+...+. .++-.|..++-|.+++.+|+|...|.+ +|..
T Consensus 507 ~~~S~d~eiLyW~--~~~~~~----~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y 580 (626)
T KOG2106|consen 507 VSNSGDYEILYWK--PSECKQ----ITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY 580 (626)
T ss_pred EeccCceEEEEEc--cccCcc----cceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence 8888887787783 222211 1114456786655443322 456678889999999999999999999 8875
Q ss_pred C
Q 001202 481 R 481 (1124)
Q Consensus 481 ~ 481 (1124)
-
T Consensus 581 P 581 (626)
T KOG2106|consen 581 P 581 (626)
T ss_pred c
Confidence 3
No 118
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.68 E-value=2.1e-15 Score=166.28 Aligned_cols=272 Identities=15% Similarity=0.176 Sum_probs=193.1
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCcee-EEEee------c--cCCCCC-CCCCCeEEEEECCCCCEE
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLI-RTVSL------Y--DWGYSM-DDTGPVSCIAWTPDNSAF 322 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~-~~l~~------~--~~g~~~-~h~g~V~~lawSPDG~~L 322 (1124)
..|.-.+ |++++|+.+++.+++.||+|.=|++.+ +... ..+.. + ....+. +|...+.+++.||||++|
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~t-gk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLT-GKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhc-CcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence 4576666 999999999999999999999999977 4322 11111 0 001122 688899999999999999
Q ss_pred EEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEE
Q 001202 323 AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF 399 (1124)
Q Consensus 323 asgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~ 399 (1124)
|+|+.|..|.||+..+...+.++.+| ...|.+++|.... ..+.+++ ++++|+.+....+-+.-||++.|..+
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~gh-r~~V~~L~fr~gt----~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFKGH-RGAVSSLAFRKGT----SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred EecCCCceEEEecCcccchhhccccc-ccceeeeeeecCc----cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 99999999999999999999999998 7899999996554 4455555 99999999887777888999999877
Q ss_pred ec---cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE
Q 001202 400 SF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (1124)
Q Consensus 400 s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v 476 (1124)
+. .+.+..|+.|.++++|.+.. +. ...|.++.+.+.|++|= +..++++|+.+|.|
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~e-es--------------------qlifrg~~~sidcv~~I-n~~HfvsGSdnG~I 350 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPE-ES--------------------QLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSI 350 (479)
T ss_pred chhcccceEEeccccceeEEEeccc-cc--------------------eeeeeCCCCCeeeEEEe-cccceeeccCCceE
Confidence 76 55555666999999999822 22 23566788889999997 55688999999999
Q ss_pred -EEEcCCCcEEEec-CcCc----e-----eeeEEEEEEec--CCEEEEEEEecCCCeEEEEEeeCC-CCCCcceEEEeec
Q 001202 477 -LYDIRQKKWRVFG-DITQ----E-----QKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSL 542 (1124)
Q Consensus 477 -lwd~~sg~wk~f~-~~~~----e-----~~~~v~gl~W~--~~~liv~~~~~~~~~~elrly~~~-~ld~~~~l~~~~l 542 (1124)
+|++..++ .+|. ...| + +++=+.+++-. .|.+..+ +.+..+|+|-.+ ++..-+++...++
T Consensus 351 aLWs~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asG-----S~~G~vrLW~i~~g~r~i~~l~~ls~ 424 (479)
T KOG0299|consen 351 ALWSLLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASG-----SWSGCVRLWKIEDGLRAINLLYSLSL 424 (479)
T ss_pred EEeeecccC-ceeEeeccccccCCccccccccceeeeEecccCceEEec-----CCCCceEEEEecCCccccceeeeccc
Confidence 99998766 3332 1111 1 00112233222 2333333 445689999986 6555566666655
Q ss_pred CCcc--EEEEeeCCEEEEE
Q 001202 543 LAKP--IVMDVYEDYILVT 559 (1124)
Q Consensus 543 ~s~~--l~l~~~~~~llv~ 559 (1124)
..-+ +.++..+..++++
T Consensus 425 ~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 425 VGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccEEEEEEEccCCCEEEEe
Confidence 5422 2334444545553
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.67 E-value=4.6e-15 Score=170.41 Aligned_cols=246 Identities=15% Similarity=0.167 Sum_probs=190.8
Q ss_pred cCCcEEEEEecCCceEeeeccccce-----ecCCCCeE-E-EEEcc-CCCEEEEEecCCeEEEEEcCCCCceeEEEeecc
Q 001202 228 SNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAV-C-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1124)
Q Consensus 228 ~dG~~~~~~~~d~~i~~wd~~~~~~-----~~gh~~~v-~-va~sp-dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~ 299 (1124)
.++-.++.++.|+++++|+-...+. ..+|.+.+ + +++-+ ++-.+.+|+.|++|.+|.... ..+..+++
T Consensus 23 ~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~-~~P~~~Lk--- 98 (745)
T KOG0301|consen 23 TDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ-AEPLYTLK--- 98 (745)
T ss_pred cCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC-CCchhhhh---
Confidence 3455677888899999998644322 14566666 4 66664 455699999999999999987 77888887
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEE
Q 001202 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (1124)
Q Consensus 300 ~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~ 376 (1124)
| |...|+|++---++. ++|||.|.+++||-.. ++..++.+| +..|+++++-|.+ .++||+ +++
T Consensus 99 -g----H~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH-~asVWAv~~l~e~-----~~vTgsaDKtIk 164 (745)
T KOG0301|consen 99 -G----HKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGH-TASVWAVASLPEN-----TYVTGSADKTIK 164 (745)
T ss_pred -c----cccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCc-chheeeeeecCCC-----cEEeccCcceee
Confidence 6 999999999888888 9999999999999874 566778888 8999999998875 556776 899
Q ss_pred EEeCCCCeEEEEecCCcceEEEEec--cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCc
Q 001202 377 QWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (1124)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~s~--~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~ 454 (1124)
+|.. ++++.+..+|.+-|..+.. ...++|++.||.++.|++ .|+. ...+.+|..-
T Consensus 165 lWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~--------------------l~~~~ghtn~ 221 (745)
T KOG0301|consen 165 LWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEV--------------------LLEMHGHTNF 221 (745)
T ss_pred eccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCce--------------------eeeeeccceE
Confidence 9974 7888999999998855554 557899999999999997 4444 5678899999
Q ss_pred eEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeE-----EEE-EEecCCEEEEEEEecCCCeEEEEEee
Q 001202 455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ-----SKG-LLWLGKIIVVCNYIDSSNTYELLFYP 527 (1124)
Q Consensus 455 I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~-----v~g-l~W~~~~liv~~~~~~~~~~elrly~ 527 (1124)
|.+++..+++..++++|+|+++ +|+... ..+.+. |.. -+|.++-+++||. | .-+|+|.
T Consensus 222 vYsis~~~~~~~Ivs~gEDrtlriW~~~e----------~~q~I~lPttsiWsa~~L~NgDIvvg~S---D--G~VrVfT 286 (745)
T KOG0301|consen 222 VYSISMALSDGLIVSTGEDRTLRIWKKDE----------CVQVITLPTTSIWSAKVLLNGDIVVGGS---D--GRVRVFT 286 (745)
T ss_pred EEEEEecCCCCeEEEecCCceEEEeecCc----------eEEEEecCccceEEEEEeeCCCEEEecc---C--ceEEEEE
Confidence 9999999999999999999999 998651 122222 222 2444556666655 2 3689987
Q ss_pred CC
Q 001202 528 RY 529 (1124)
Q Consensus 528 ~~ 529 (1124)
.+
T Consensus 287 ~~ 288 (745)
T KOG0301|consen 287 VD 288 (745)
T ss_pred ec
Confidence 63
No 120
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=7.7e-15 Score=161.65 Aligned_cols=222 Identities=15% Similarity=0.220 Sum_probs=147.1
Q ss_pred hcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCC-eE
Q 001202 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNK-HM 145 (1124)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~-~l 145 (1124)
+|.++++.|-|....+.|++-||.++||+++...+.. +.++-+. +.++ ...+|+++|. .+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-----------lqS~~l~---~fPi-----~~a~f~p~G~~~i 273 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-----------LQSIHLE---KFPI-----QKAEFAPNGHSVI 273 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChh-----------heeeeec---cCcc-----ceeeecCCCceEE
Confidence 6889999999999999999999999999998644321 1111111 1112 2356777777 34
Q ss_pred EEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCC-CCceEEEEEecCCcceEE
Q 001202 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP-ISSAIIWLELCLPMRLLF 224 (1124)
Q Consensus 146 lv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~-~~~~I~~i~~s~~~~~~~ 224 (1124)
++++... +.++||-++.....+. ...+ ....+. ..
T Consensus 274 ~~s~rrk--y~ysyDle~ak~~k~~--------------------------------~~~g~e~~~~e----------~F 309 (514)
T KOG2055|consen 274 FTSGRRK--YLYSYDLETAKVTKLK--------------------------------PPYGVEEKSME----------RF 309 (514)
T ss_pred Eecccce--EEEEeecccccccccc--------------------------------CCCCcccchhh----------ee
Confidence 4443333 4456876543222110 0111 122232 34
Q ss_pred EEecCCcEEEEEecCCceEeeecccccee--cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCC
Q 001202 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (1124)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~wd~~~~~~~--~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g 301 (1124)
.+++||+++++.+..+-|.+....+.+.. ....+.+ .+.|+.|++.|.+.+.+|.|.+||+.. ..+++++.
T Consensus 310 eVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~-~~~~~rf~----- 383 (514)
T KOG2055|consen 310 EVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ-NSCLHRFV----- 383 (514)
T ss_pred EecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCC-cceEEEEe-----
Confidence 45688888888888888887766655433 1234556 889999999999999999999999998 67777776
Q ss_pred CCCCCCCCe--EEEEECCCCCEEEEEECCCcEEEEEcCCC------eeeEEeccCCcCceeeeEEcCCC
Q 001202 302 YSMDDTGPV--SCIAWTPDNSAFAVGWKSRGLTVWSVSGC------RLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 302 ~~~~h~g~V--~~lawSPDG~~Lasgs~Dg~I~vWdv~~~------~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
..|.| ++++-|++|.+||+|+..|.|.|||..++ +++.++..- ...|+++.|+|+.
T Consensus 384 ----D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL-tt~Itsl~Fn~d~ 447 (514)
T KOG2055|consen 384 ----DDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL-TTAITSLQFNHDA 447 (514)
T ss_pred ----ecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh-heeeeeeeeCcch
Confidence 45555 56777899999999999999999997653 333333332 3445666666655
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=8.3e-15 Score=173.17 Aligned_cols=256 Identities=14% Similarity=0.154 Sum_probs=173.6
Q ss_pred eEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEE
Q 001202 134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (1124)
Q Consensus 134 ~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~ 213 (1124)
.-.|+.++|+.+.++.+||.|++ |+....... |- ....++..|.+
T Consensus 17 t~i~~d~~gefi~tcgsdg~ir~--~~~~sd~e~---------------P~------------------ti~~~g~~v~~ 61 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGSDGDIRK--WKTNSDEEE---------------PE------------------TIDISGELVSS 61 (933)
T ss_pred EEEEEcCCCCEEEEecCCCceEE--eecCCcccC---------------Cc------------------hhhccCceeEE
Confidence 34577788999999999999988 443221100 00 00012333333
Q ss_pred EEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce---ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCC
Q 001202 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA 289 (1124)
Q Consensus 214 i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~---~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~ 289 (1124)
+ .-++..+++++.++++..+....++. +.--+-++ +++|+.+|.++|.|+.|-.|++-++.+ .
T Consensus 62 i------------a~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D-~ 128 (933)
T KOG1274|consen 62 I------------ACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD-S 128 (933)
T ss_pred E------------eecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccc-c
Confidence 2 23344677788888888776655432 11123345 899999999999999999999999988 6
Q ss_pred ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceE
Q 001202 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (1124)
Q Consensus 290 ~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l 369 (1124)
.....+. | |+++|.+|.|+|.|.+||+.+.||.|+||++..+.+..++.+- -|+. +..
T Consensus 129 s~~~~lr----g----h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v----------~k~n----~~~ 186 (933)
T KOG1274|consen 129 SQEKVLR----G----HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGV----------DKDN----EFI 186 (933)
T ss_pred chheeec----c----cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccC----------Cccc----ccc
Confidence 6677777 6 9999999999999999999999999999999999988888763 1222 222
Q ss_pred -EEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceee
Q 001202 370 -MSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 448 (1124)
Q Consensus 370 -~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~ 448 (1124)
..-.+...|.++++++...... +++++++....+. ...+
T Consensus 187 ~s~i~~~~aW~Pk~g~la~~~~d--------------------~~Vkvy~r~~we~--------------------~f~L 226 (933)
T KOG1274|consen 187 LSRICTRLAWHPKGGTLAVPPVD--------------------NTVKVYSRKGWEL--------------------QFKL 226 (933)
T ss_pred ccceeeeeeecCCCCeEEeeccC--------------------CeEEEEccCCcee--------------------heee
Confidence 1223667899998887765433 2333332211111 0111
Q ss_pred --ccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecC
Q 001202 449 --ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG 506 (1124)
Q Consensus 449 --~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~ 506 (1124)
..+...+.++.|||+|+|||+++.||.| +||..+. +.+|....|.+++|..
T Consensus 227 r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~-------~~~~~~~~Vc~~aw~p 280 (933)
T KOG1274|consen 227 RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH-------ERHEFKRAVCCEAWKP 280 (933)
T ss_pred cccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc-------hhccccceeEEEecCC
Confidence 1122238899999999999999999999 9999872 1144445577888853
No 122
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=6.9e-15 Score=154.83 Aligned_cols=238 Identities=17% Similarity=0.290 Sum_probs=156.3
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEE
Q 001202 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (1124)
Q Consensus 255 gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vW 334 (1124)
.|..+.|+.||+-|.+||+||.||.|-|||+.+ ...-+.+. +|.-+|.|++||+||+.|.|++.|..|++|
T Consensus 22 d~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-~~iar~ls--------aH~~pi~sl~WS~dgr~LltsS~D~si~lw 92 (405)
T KOG1273|consen 22 DNPLAECCQFSRWGDYLAVGCANGRVVIYDFDT-FRIARMLS--------AHVRPITSLCWSRDGRKLLTSSRDWSIKLW 92 (405)
T ss_pred cCCccceEEeccCcceeeeeccCCcEEEEEccc-cchhhhhh--------ccccceeEEEecCCCCEeeeecCCceeEEE
Confidence 344455999999999999999999999999988 55445555 399999999999999999999999999999
Q ss_pred EcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee----eEEEEeCCCCeEEEEecCCcceE----EEEec-cceE
Q 001202 335 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSERV----LIFSF-GKCC 405 (1124)
Q Consensus 335 dv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~----~i~~W~~~~~~l~~~~~~~~~~v----~~~s~-~k~~ 405 (1124)
|+..|.+...++- .++|+.+.|+|.... ..+++-. .+...+.....++....+.+... ..|+. |+.+
T Consensus 93 Dl~~gs~l~rirf--~spv~~~q~hp~k~n--~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yI 168 (405)
T KOG1273|consen 93 DLLKGSPLKRIRF--DSPVWGAQWHPRKRN--KCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYI 168 (405)
T ss_pred eccCCCceeEEEc--cCccceeeeccccCC--eEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEE
Confidence 9999988888875 578999999997531 2233211 33344432222222211111111 23444 7788
Q ss_pred EeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccC-CCceEEEEEccCCCEEEEEcCCCeE-EEEcCCC
Q 001202 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ-NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 406 ~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~-~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg 483 (1124)
.+|..-|.+.+.+..+.+. ...+.-. ...|+++.++..|+++++-+.|.+| .|+++.-
T Consensus 169 itGtsKGkllv~~a~t~e~--------------------vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 169 ITGTSKGKLLVYDAETLEC--------------------VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDI 228 (405)
T ss_pred EEecCcceEEEEecchhee--------------------eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence 8887766666555333221 2222222 2468999999999999999999999 9998631
Q ss_pred cEE-EecCcCceeeeE--EEEEEe-----cCC--EEEEEEEecCCCeEEEEEeeCC
Q 001202 484 KWR-VFGDITQEQKIQ--SKGLLW-----LGK--IIVVCNYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 484 ~wk-~f~~~~~e~~~~--v~gl~W-----~~~--~liv~~~~~~~~~~elrly~~~ 529 (1124)
.-. .-+..+.++.+. |..+.| .++ |++++. ...+.|.+|.+.
T Consensus 229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s----~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS----ARAHALYIWEKS 280 (405)
T ss_pred cccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc----ccceeEEEEecC
Confidence 100 011222223332 333444 344 444432 566789999883
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=2.2e-15 Score=174.80 Aligned_cols=276 Identities=14% Similarity=0.207 Sum_probs=185.1
Q ss_pred cceeEEEEecCCcEEEEEeCCCeEEEEEeeecCce----eecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCC
Q 001202 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS----IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNK 143 (1124)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~ 143 (1124)
++..++.-.+|-..|++++. ..+++|.+...... ++.+..+.. .+...++. .. ..+.+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~---------------~~S~~DVk-W~-~~~~N 101 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNK---------------FYSAADVK-WG-QLYSN 101 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccce---------------eeehhhcc-cc-cchhh
Confidence 33456777788888888754 47899988754321 111111111 00000010 11 23456
Q ss_pred eEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceE
Q 001202 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1124)
Q Consensus 144 ~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~ 223 (1124)
.|+++..+|.|.+ ||-...... .+ -..+.+|.-.+.+++|++.
T Consensus 102 lIAT~s~nG~i~v--Wdlnk~~rn---------------------k~----------l~~f~EH~Rs~~~ldfh~t---- 144 (839)
T KOG0269|consen 102 LIATCSTNGVISV--WDLNKSIRN---------------------KL----------LTVFNEHERSANKLDFHST---- 144 (839)
T ss_pred hheeecCCCcEEE--EecCccccc---------------------hh----------hhHhhhhccceeeeeeccC----
Confidence 7888888999887 553321110 00 0134578888989888853
Q ss_pred EEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccC-CCEEEEEecCCeEEEEEcCCCCceeEEEeec
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spd-g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~ 298 (1124)
.-.++++|+.|+++|.||....+.. .+..+++ .|.|+|. +..+|++..+|.+++||+.....+...+.
T Consensus 145 -----ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~-- 217 (839)
T KOG0269|consen 145 -----EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT-- 217 (839)
T ss_pred -----CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh--
Confidence 4567899999999999998754322 5667888 9999995 67899999999999999998666665555
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCee--eEEeccCCcCceeeeEEcCCCCCCcceEEEee---
Q 001202 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (1124)
Q Consensus 299 ~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l--~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~--- 373 (1124)
+|.|+|.|+.|+|++.+|||||+|+.|+||+..+.+. +.++.. ..+|..+.|.|.-. ..|++++
T Consensus 218 ------AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT--iapv~rVkWRP~~~---~hLAtcsmv~ 286 (839)
T KOG0269|consen 218 ------AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT--IAPVGRVKWRPARS---YHLATCSMVV 286 (839)
T ss_pred ------cccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee--cceeeeeeeccCcc---chhhhhhccc
Confidence 4999999999999999999999999999999987654 344433 56899999999862 3344443
Q ss_pred --eEEEEeCCCCe-EEEEecCCcceE--EEEec--cceEEeeccCCceee
Q 001202 374 --SMMQWDEYGYR-LYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYA 416 (1124)
Q Consensus 374 --~i~~W~~~~~~-l~~~~~~~~~~v--~~~s~--~k~~~s~s~d~~v~~ 416 (1124)
.+.+||+.... .+.+...|++.+ .++.- ...+.+++.|+++..
T Consensus 287 dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 287 DTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred cceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 88999987643 455666666655 23322 223456666666543
No 124
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=1.3e-14 Score=152.38 Aligned_cols=236 Identities=11% Similarity=0.112 Sum_probs=178.4
Q ss_pred ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcE
Q 001202 253 ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (1124)
Q Consensus 253 ~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I 331 (1124)
+.||.+.+ .|+.......+++++.|.+-+||.+.+ +.++.+.. | |.|.|+||+|+|.|..+++|+.|++-
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~----G----H~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATYT----G----HTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeeec----c----cccceeeEEeccccceEEEccCCcch
Confidence 36999999 888887778999999999999999998 88888887 7 99999999999999999999999999
Q ss_pred EEEEc------CC----------------------------------CeeeEEeccCCcCceeeeEEcCCCCCCcceEEE
Q 001202 332 TVWSV------SG----------------------------------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (1124)
Q Consensus 332 ~vWdv------~~----------------------------------~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~s 371 (1124)
-||.. .. ..+++.|.+| ...|.+..|-..+ +.+++
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH-~~vV~a~dWL~gg----~Q~vT 289 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH-RAVVSACDWLAGG----QQMVT 289 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc-ccceEehhhhcCc----ceeee
Confidence 99972 10 1234556666 5666666666655 77788
Q ss_pred ee---eEEEEeCCCCeEEEEecCCcceEEE--Eec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccc
Q 001202 372 GT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (1124)
Q Consensus 372 g~---~i~~W~~~~~~l~~~~~~~~~~v~~--~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p 445 (1124)
++ +..+||.++++++....||+..+.- -.+ .+.+++.+.|.+.++||+...-. ..
T Consensus 290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~-------------------sV 350 (481)
T KOG0300|consen 290 ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ-------------------SV 350 (481)
T ss_pred eeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcc-------------------ee
Confidence 87 8899999999999999999988843 334 77889999999999999874333 24
Q ss_pred eeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEe-cCCEEEEEEEecCCCeEEE
Q 001202 446 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW-LGKIIVVCNYIDSSNTYEL 523 (1124)
Q Consensus 446 ~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W-~~~~liv~~~~~~~~~~el 523 (1124)
..|.||...|+++.|..| ..+++|+.|.++ +||++..+-.+-..... -.+..+.- -++-+|+.. ....++
T Consensus 351 ~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtd---S~~NRvavs~g~~iIAiP----hDNRqv 422 (481)
T KOG0300|consen 351 AVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTD---SPANRVAVSKGHPIIAIP----HDNRQV 422 (481)
T ss_pred eeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeecC---CccceeEeecCCceEEec----cCCceE
Confidence 568899999999999865 468899999999 99997765332111000 01111222 233344432 344689
Q ss_pred EEeeCC
Q 001202 524 LFYPRY 529 (1124)
Q Consensus 524 rly~~~ 529 (1124)
|+|+..
T Consensus 423 RlfDln 428 (481)
T KOG0300|consen 423 RLFDLN 428 (481)
T ss_pred EEEecC
Confidence 999884
No 125
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.65 E-value=2e-15 Score=154.21 Aligned_cols=277 Identities=12% Similarity=0.036 Sum_probs=209.3
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce---ecCCCCeE-EEEEccCCCEEEEEecCCe
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGV 279 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~---~~gh~~~v-~va~spdg~lLAsGs~Dgt 279 (1124)
..+|..+|.++.|||- .|||-++++++.|+...+-++.++.- ..||.++| +...+.+...-|++++|-+
T Consensus 10 c~ghtrpvvdl~~s~i-------tp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadft 82 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPI-------TPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFT 82 (334)
T ss_pred EcCCCcceeEEeccCC-------CCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccch
Confidence 4578889999999974 49999999999999888877777653 27999999 9999999999999999999
Q ss_pred EEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCe-eeEEeccCCcCceeeeEE
Q 001202 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIV 358 (1124)
Q Consensus 280 V~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~-l~~tl~~h~~~~V~s~~~ 358 (1124)
-+|||.-+ +..++++. |+--|..++|+.|.++|.+|+.++-+||+|++... ....+.+| ...|..+.|
T Consensus 83 akvw~a~t-gdelhsf~---------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~gh-tg~Ir~v~w 151 (334)
T KOG0278|consen 83 AKVWDAVT-GDELHSFE---------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGH-TGGIRTVLW 151 (334)
T ss_pred hhhhhhhh-hhhhhhhh---------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCC-CCcceeEEE
Confidence 99999887 77777776 88889999999999999999999999999997643 35566777 788998888
Q ss_pred cCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceE--EEEeccceEEeeccCCceeeeEeeecCCeEEEeecCC
Q 001202 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (1124)
Q Consensus 359 sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~ 433 (1124)
...+ +.++|.. ++++||..++.....+.- ...| ..++....+++....+++..|+...-+.
T Consensus 152 c~eD----~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~--------- 217 (334)
T KOG0278|consen 152 CHED----KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGL--------- 217 (334)
T ss_pred eccC----ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCceeEEeccccccc---------
Confidence 7766 6777655 999999999988776543 2233 4444444456667777888998654322
Q ss_pred CccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecCCEEEEE
Q 001202 434 TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVC 512 (1124)
Q Consensus 434 ~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~ 512 (1124)
....++| ..|.+.+++|+...++.||+|+.+ .||..||.-.-.-+..+-. .|..+.+.++..+.+
T Consensus 218 -----lKs~k~P-------~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g--pVhcVrFSPdGE~yA 283 (334)
T KOG0278|consen 218 -----LKSYKMP-------CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG--PVHCVRFSPDGELYA 283 (334)
T ss_pred -----eeeccCc-------cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCC--ceEEEEECCCCceee
Confidence 0112223 248889999999999999999999 9999998633221222222 355566677666554
Q ss_pred EEecCCCeEEEEEeeCC
Q 001202 513 NYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 513 ~~~~~~~~~elrly~~~ 529 (1124)
.. +.+..||+|...
T Consensus 284 sG---SEDGTirlWQt~ 297 (334)
T KOG0278|consen 284 SG---SEDGTIRLWQTT 297 (334)
T ss_pred cc---CCCceEEEEEec
Confidence 33 344589999774
No 126
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.64 E-value=5.2e-14 Score=155.69 Aligned_cols=177 Identities=16% Similarity=0.245 Sum_probs=139.8
Q ss_pred EEEEEecCCceEeeeccccce----------ecCCCCeE-EEEEccC-CCEEEEEecCCeEEEEEcCCC-CceeEEEeec
Q 001202 232 LMSCSVSKKGLKLAEFIKIDK----------ELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAES-ASLIRTVSLY 298 (1124)
Q Consensus 232 ~~~~~~~d~~i~~wd~~~~~~----------~~gh~~~v-~va~spd-g~lLAsGs~DgtV~vwd~~~~-~~~~~~l~~~ 298 (1124)
.+++++.|.++.+||...... ..+|.+.| .|+|+|. ..++++.+.|+.+.|||+... .+..+...
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-- 269 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-- 269 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc--
Confidence 466778889999998753221 16899999 9999995 568999999999999999851 23333333
Q ss_pred cCCCCCCCCCCeEEEEECC-CCCEEEEEECCCcEEEEEcCC-CeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---
Q 001202 299 DWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (1124)
Q Consensus 299 ~~g~~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I~vWdv~~-~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~--- 373 (1124)
+|+++|+|++|+| ++..||+||.|++|++||+.. ...+.++.+| ...|..+.|+|..+ ..++|++
T Consensus 270 ------ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~e---tvLASSg~D~ 339 (422)
T KOG0264|consen 270 ------AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNE---TVLASSGTDR 339 (422)
T ss_pred ------ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC-CcceEEEEeCCCCC---ceeEecccCC
Confidence 4999999999999 566999999999999999976 3568899998 78999999999872 4455544
Q ss_pred eEEEEeCCC--------------CeEEEEecCCcceEEEEec----cceEEeeccCCceeeeEee
Q 001202 374 SMMQWDEYG--------------YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVI 420 (1124)
Q Consensus 374 ~i~~W~~~~--------------~~l~~~~~~~~~~v~~~s~----~k~~~s~s~d~~v~~w~l~ 420 (1124)
.+++||... .+++.+-.||...|..|+. --.++|.+.|+...+|...
T Consensus 340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 889998742 2467788899999966655 4468899999999999853
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=5.2e-15 Score=163.55 Aligned_cols=264 Identities=14% Similarity=0.138 Sum_probs=182.1
Q ss_pred eEEEEEc--CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCC
Q 001202 32 GLLLIAS--PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQ 109 (1124)
Q Consensus 32 ~llA~~~--~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~ 109 (1124)
.+++++. ...|.+|.+. +......+ ..-.|++.+++=+|+|.+++.+|-.|.|.+|.+.++.-...
T Consensus 51 ~yllsaq~~rp~l~vw~i~-k~~~~~q~------~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v----- 118 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEIL-KKDQVVQY------IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV----- 118 (476)
T ss_pred hheeeecccCccccccccC-chhhhhhh------cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHH-----
Confidence 3555544 3478999985 44333311 22358899999999999999999999999999998753211
Q ss_pred CCCcceeeEEEEeeeeeecccccceEEEEee--cCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCC
Q 001202 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVS--DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPS 187 (1124)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~ 187 (1124)
+..+...|+|+.. |+..++.|+.||.|.+|....-...... . ..
T Consensus 119 ------------------~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~--------~--~~------ 164 (476)
T KOG0646|consen 119 ------------------LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND--------H--SV------ 164 (476)
T ss_pred ------------------HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC--------C--Cc------
Confidence 1233345677554 5678899999999998654322111000 0 00
Q ss_pred CCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccceec--CCCCeE-EEEE
Q 001202 188 NGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL--GSGDAV-CASI 264 (1124)
Q Consensus 188 ~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~--gh~~~v-~va~ 264 (1124)
.....|..|+-+|+++...+.. ++ ..+++.+.|.++++||...+..+. --..++ ++++
T Consensus 165 -----------~p~~~f~~HtlsITDl~ig~Gg-------~~-~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~l 225 (476)
T KOG0646|consen 165 -----------KPLHIFSDHTLSITDLQIGSGG-------TN-ARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVAL 225 (476)
T ss_pred -----------cceeeeccCcceeEEEEecCCC-------cc-ceEEEecCCceEEEEEeccceeeEEEecCCcceeEEE
Confidence 1112467888999998776543 33 357788999999999998876542 123344 9999
Q ss_pred ccCCCEEEEEecCCeEEEEEcCCCCc-ee----E--EEeeccCCCCCCCCC--CeEEEEECCCCCEEEEEECCCcEEEEE
Q 001202 265 APEQQILAVGTRRGVVELYDLAESAS-LI----R--TVSLYDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1124)
Q Consensus 265 spdg~lLAsGs~DgtV~vwd~~~~~~-~~----~--~l~~~~~g~~~~h~g--~V~~lawSPDG~~Lasgs~Dg~I~vWd 335 (1124)
.|-.+.+-+|+++|.|.+.++..... .. + .....+.....+|.+ +|+|++.|-||+.|++|+.||.|+|||
T Consensus 226 Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 226 DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 99999999999999999888754210 00 0 000000011235888 999999999999999999999999999
Q ss_pred cCCCeeeEEeccCCcCceeeeEEcCC
Q 001202 336 VSGCRLMSTIRQISLSSISSPIVKPN 361 (1124)
Q Consensus 336 v~~~~l~~tl~~h~~~~V~s~~~sp~ 361 (1124)
+.+.+++.++... .++|+.+.+.|-
T Consensus 306 i~S~Q~iRtl~~~-kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 306 IYSKQCIRTLQTS-KGPVTNLQINPL 330 (476)
T ss_pred cchHHHHHHHhhh-ccccceeEeecc
Confidence 9999999988743 567877777543
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4.6e-14 Score=149.10 Aligned_cols=239 Identities=15% Similarity=0.186 Sum_probs=159.4
Q ss_pred CceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee--cCCCCeE-EEEEccCCCEEEEEecCCeEEEEE
Q 001202 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRRGVVELYD 284 (1124)
Q Consensus 208 ~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~--~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd 284 (1124)
.-.|.++.|+ +.+..++.++-|+++++++....+.. ..|..++ +++|.+ ...+++|+.||.|+++|
T Consensus 13 ~d~IS~v~f~----------~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~D 81 (323)
T KOG1036|consen 13 EDGISSVKFS----------PSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYD 81 (323)
T ss_pred hhceeeEEEc----------CcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEE
Confidence 3456666666 55666677778888888887655332 5688999 999987 46789999999999999
Q ss_pred cCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCC
Q 001202 285 LAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC 364 (1124)
Q Consensus 285 ~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~ 364 (1124)
+.+ +.....- .|.++|.||.+++--..+++|++|++|++||..+.....++... ..|.++..+-+
T Consensus 82 ln~-~~~~~ig---------th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~--kkVy~~~v~g~--- 146 (323)
T KOG1036|consen 82 LNT-GNEDQIG---------THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG--KKVYCMDVSGN--- 146 (323)
T ss_pred ecC-Ccceeec---------cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC--ceEEEEeccCC---
Confidence 987 4333222 39999999999998889999999999999999886666666553 36666655432
Q ss_pred CcceEEEee--eEEEEeCCCCeEEEEecCCc----ceEEEEec-cceEEeeccCCceeeeEeeecC---CeEEEeecCCC
Q 001202 365 KYEPLMSGT--SMMQWDEYGYRLYAIEEGSS----ERVLIFSF-GKCCLNRGVSGMTYARQVIYGE---DRLLVVQSEDT 434 (1124)
Q Consensus 365 ~~~~l~sg~--~i~~W~~~~~~l~~~~~~~~----~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~---~~l~l~~~~~~ 434 (1124)
..++.+. .+..||.............. .+-+++-+ +.-.+.++-||.+.+-.+...+ .+-+.+.
T Consensus 147 --~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFk---- 220 (323)
T KOG1036|consen 147 --RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK---- 220 (323)
T ss_pred --EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEE----
Confidence 3444333 88899988765544322221 11133333 4445667777777554333221 1111111
Q ss_pred ccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 435 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 435 ~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
-|.... .-..--.||++++|+|--+.+|+||.||.| +||..++|
T Consensus 221 ----CHr~~~--~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 221 ----CHRLSE--KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred ----eeeccc--CCceEEEEeceeEeccccceEEecCCCceEEEccCcchh
Confidence 011000 000112489999999999999999999999 99998865
No 129
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=3.7e-16 Score=179.73 Aligned_cols=215 Identities=17% Similarity=0.211 Sum_probs=180.3
Q ss_pred ecCCcEEEEEecCCceEeeeccccce---ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCC
Q 001202 227 YSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (1124)
Q Consensus 227 s~dG~~~~~~~~d~~i~~wd~~~~~~---~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~ 302 (1124)
-..++.+++|+.+..+.+|.+..+.. +.+|..+| |+.|+++..+||.|+.||+|++||+.. ++.++++. |
T Consensus 37 ~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee-Ak~vrtLt----g- 110 (825)
T KOG0267|consen 37 RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE-AKIVRTLT----G- 110 (825)
T ss_pred eccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh-hhhhhhhh----c-
Confidence 46788888888888888887665432 26899999 999999999999999999999999998 88888887 6
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEe
Q 001202 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (1124)
Q Consensus 303 ~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~ 379 (1124)
|...+.+|.|+|-|.+.|+|+.|+.+++||.....|..++.+| ...|..++|+|+| ..+++|. ++++||
T Consensus 111 ---h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~-~~vv~~l~lsP~G----r~v~~g~ed~tvki~d 182 (825)
T KOG0267|consen 111 ---HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH-TRVVDVLRLSPDG----RWVASGGEDNTVKIWD 182 (825)
T ss_pred ---cccCcceeeeccceEEeccccccccceehhhhccCceeeecCC-cceeEEEeecCCC----ceeeccCCcceeeeec
Confidence 9999999999999999999999999999999977789999986 7889999999999 8888876 899999
Q ss_pred CCCCeEEEEecCCcceEEEEec--cc-eEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceE
Q 001202 380 EYGYRLYAIEEGSSERVLIFSF--GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (1124)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~s~--~k-~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~ 456 (1124)
...+++.....+|.+++..+.+ .+ .+.+|+.|+++++|++.+-+- ..........|+
T Consensus 183 ~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~--------------------I~s~~~~~~~v~ 242 (825)
T KOG0267|consen 183 LTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV--------------------ISSGKPETDGVR 242 (825)
T ss_pred ccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE--------------------eeccCCccCCce
Confidence 9999999999989888866666 33 456899999999999753221 111112245799
Q ss_pred EEEEccCCCEEEEEcCCCe
Q 001202 457 HVAASKDGMFLAVAGLHGL 475 (1124)
Q Consensus 457 ~va~SpdG~~lAvag~dG~ 475 (1124)
+.+|+|+|+.+++|-....
T Consensus 243 ~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 243 SLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred eeeecCCceeeecCchhhh
Confidence 9999999999998876543
No 130
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.64 E-value=3.6e-14 Score=149.14 Aligned_cols=120 Identities=16% Similarity=0.276 Sum_probs=96.8
Q ss_pred CceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce-----ecCCCCeE-EEEEccCCCEEEEEecCCeEE
Q 001202 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAV-CASIAPEQQILAVGTRRGVVE 281 (1124)
Q Consensus 208 ~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~-----~~gh~~~v-~va~spdg~lLAsGs~DgtV~ 281 (1124)
.-.|.+++|||. ...+++.++-|+++++|+...... ...|.+++ |++|+.||..+++|+.|++++
T Consensus 27 ~DsIS~l~FSP~---------~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k 97 (347)
T KOG0647|consen 27 EDSISALAFSPQ---------ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAK 97 (347)
T ss_pred ccchheeEeccc---------cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceE
Confidence 446777777762 344566778899999999876311 25789999 999999999999999999999
Q ss_pred EEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCC--EEEEEECCCcEEEEEcCCCeeeEEec
Q 001202 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1124)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~--~Lasgs~Dg~I~vWdv~~~~l~~tl~ 346 (1124)
+||+.+ ++.. ++. .|.++|.++.|-+... +|++||.|+++|.||.....++.++.
T Consensus 98 ~wDL~S-~Q~~-~v~--------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~ 154 (347)
T KOG0647|consen 98 LWDLAS-GQVS-QVA--------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ 154 (347)
T ss_pred EEEccC-CCee-eee--------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee
Confidence 999998 5433 333 2999999999987766 99999999999999998877776664
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.64 E-value=4.2e-15 Score=164.22 Aligned_cols=264 Identities=13% Similarity=0.107 Sum_probs=191.4
Q ss_pred EEEeeCCeEEEEEcCCcEEEEecCCCce--eEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCce
Q 001202 25 IYFKVNNGLLLIASPCHIELWSSSQHKV--RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (1124)
Q Consensus 25 v~fS~dg~llA~~~~~~l~IW~~~~~~~--~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~ 102 (1124)
+.+|...+.+-+++.+.|+|||+.+++- ++.. ...+.....+.++...|||+.|.||+...+|-|||+......
T Consensus 425 vtIS~~trhVyTgGkgcVKVWdis~pg~k~Pvsq----Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr 500 (705)
T KOG0639|consen 425 VTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQ----LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR 500 (705)
T ss_pred EEecCCcceeEecCCCeEEEeeccCCCCCCcccc----ccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc
Confidence 5678889999999999999999986532 2221 122333344568899999999999999999999999865432
Q ss_pred eecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccc
Q 001202 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (1124)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i 182 (1124)
+... ....+..--..++.+|.+..+.+++||.|.+|+.-.+.
T Consensus 501 ikae-------------------ltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~------------------- 542 (705)
T KOG0639|consen 501 IKAE-------------------LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT------------------- 542 (705)
T ss_pred hhhh-------------------cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-------------------
Confidence 1110 00000011123466788888899999999884433221
Q ss_pred cccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccceecCCC--CeE
Q 001202 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSG--DAV 260 (1124)
Q Consensus 183 ~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~--~~v 260 (1124)
-|+.+.-++++..++.++.||..+-+++.|.+++-||...+.+...|. .-|
T Consensus 543 ---------------------------~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQI 595 (705)
T KOG0639|consen 543 ---------------------------LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQI 595 (705)
T ss_pred ---------------------------eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhh
Confidence 122222233444566777999999999999999999999887765553 445
Q ss_pred -EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001202 261 -CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1124)
Q Consensus 261 -~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~ 339 (1124)
++..+|.+.++|+|-+++.|.|-.... .....+. . |..-|.++.|++.|+.+++.+.|.-+..|...-|
T Consensus 596 fSLg~cP~~dWlavGMens~vevlh~sk--p~kyqlh----l----heScVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMENSNVEVLHTSK--PEKYQLH----L----HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred eecccCCCccceeeecccCcEEEEecCC--ccceeec----c----cccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence 899999999999999999998877654 3334444 2 7788999999999999999999999999998666
Q ss_pred eeeEEeccCCcCceeeeEEcCCCCCCcceEEEee
Q 001202 340 RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1124)
Q Consensus 340 ~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~ 373 (1124)
.-+...+. .+.|.++.++.++ .++++|+
T Consensus 666 asiFqskE--~SsVlsCDIS~dd----kyIVTGS 693 (705)
T KOG0639|consen 666 ASIFQSKE--SSSVLSCDISFDD----KYIVTGS 693 (705)
T ss_pred cceeeccc--cCcceeeeeccCc----eEEEecC
Confidence 54544444 5789999888887 7888776
No 132
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=8.1e-15 Score=149.68 Aligned_cols=252 Identities=14% Similarity=0.211 Sum_probs=168.1
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCC--ceeEEEeeccCCCCCCCCCCeEEEEECC--CCCEEEEEECC
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKS 328 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~--~~~~~l~~~~~g~~~~h~g~V~~lawSP--DG~~Lasgs~D 328 (1124)
..|.+.+ .+...--|+.||+++.|++|||+.+...+ .++.++. | |.|||..++|-. -|..||+++.|
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~----G----h~GPVwqv~wahPk~G~iLAScsYD 79 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELT----G----HSGPVWKVAWAHPKFGTILASCSYD 79 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEec----C----CCCCeeEEeecccccCcEeeEeecC
Confidence 4688888 77777889999999999999999998755 3555666 6 999999999976 79999999999
Q ss_pred CcEEEEEcCCCeeeE--EeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEE
Q 001202 329 RGLTVWSVSGCRLMS--TIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCL 406 (1124)
Q Consensus 329 g~I~vWdv~~~~l~~--tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~ 406 (1124)
|.|.||.-.+++-.. ....| ...|++++|-|.+ +-+ .++
T Consensus 80 gkVIiWke~~g~w~k~~e~~~h-~~SVNsV~waphe--------------------ygl------------------~La 120 (299)
T KOG1332|consen 80 GKVIIWKEENGRWTKAYEHAAH-SASVNSVAWAPHE--------------------YGL------------------LLA 120 (299)
T ss_pred ceEEEEecCCCchhhhhhhhhh-cccceeecccccc--------------------cce------------------EEE
Confidence 999999998884222 22223 5556666655543 222 224
Q ss_pred eeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccC---C-----------CEEEEEcC
Q 001202 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD---G-----------MFLAVAGL 472 (1124)
Q Consensus 407 s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~Spd---G-----------~~lAvag~ 472 (1124)
.++.||.+.+........ |.. +.....|.--|+++++.|. | +.||+||-
T Consensus 121 casSDG~vsvl~~~~~g~--------------w~t---~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGc 183 (299)
T KOG1332|consen 121 CASSDGKVSVLTYDSSGG--------------WTT---SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGC 183 (299)
T ss_pred EeeCCCcEEEEEEcCCCC--------------ccc---hhhhhccccccceeeecCcCCCccccccCcccccceeeccCC
Confidence 556677766655433211 111 1222356666788888776 5 78999999
Q ss_pred CCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecCC-----EEEEEEEecCCCeEEEEEeeCC-CCCCcceEEEeecCCc
Q 001202 473 HGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK-----IIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSLLAK 545 (1124)
Q Consensus 473 dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~-----~liv~~~~~~~~~~elrly~~~-~ld~~~~l~~~~l~s~ 545 (1124)
|.++ +|+..++.|++-... ..+.--|+.++|.+. .-|+.| +.+..+.+|... ....-....-+++|..
T Consensus 184 Dn~VkiW~~~~~~w~~e~~l-~~H~dwVRDVAwaP~~gl~~s~iAS~----SqDg~viIwt~~~e~e~wk~tll~~f~~~ 258 (299)
T KOG1332|consen 184 DNLVKIWKFDSDSWKLERTL-EGHKDWVRDVAWAPSVGLPKSTIASC----SQDGTVIIWTKDEEYEPWKKTLLEEFPDV 258 (299)
T ss_pred ccceeeeecCCcchhhhhhh-hhcchhhhhhhhccccCCCceeeEEe----cCCCcEEEEEecCccCcccccccccCCcc
Confidence 9999 999999999863321 111123778889643 233333 233478888774 2222111112234443
Q ss_pred c--EEEEeeCCEEEEEEcCCeEEEEEEEEec
Q 001202 546 P--IVMDVYEDYILVTYRPFDVHIFHVKLFG 574 (1124)
Q Consensus 546 ~--l~l~~~~~~llv~~~d~~i~l~~~~~~~ 574 (1124)
. +.-+..++.|.|.+.|+.+++|.=..+|
T Consensus 259 ~w~vSWS~sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 259 VWRVSWSLSGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred eEEEEEeccccEEEEecCCcEEEEEEeCCCC
Confidence 3 3456788999999999999999654433
No 133
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.63 E-value=2.2e-14 Score=158.56 Aligned_cols=241 Identities=19% Similarity=0.190 Sum_probs=156.3
Q ss_pred HhhhcceeEEEEecC-CcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeec-
Q 001202 64 VQREGENLQAVWSPD-TKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD- 141 (1124)
Q Consensus 64 l~~~G~~~~v~wSPD-g~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d- 141 (1124)
+.+.|++..+..=|. ...||+.|..+.+.|||........ ...+.+.+.+.+....+ .+.-.++...
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~-----~~~~~~~Pdl~L~gH~~------eg~glsWn~~~ 189 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKP-----KASGECRPDLRLKGHEK------EGYGLSWNRQQ 189 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcc-----cccccCCCceEEEeecc------ccccccccccc
Confidence 345677777777674 4678889999999999987533110 00111222222211110 1111233332
Q ss_pred CCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcc
Q 001202 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (1124)
Q Consensus 142 ~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~ 221 (1124)
..+++.++.|+.+.+|+.+........ ...+.....|...|.+++|++.
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~-----------------------------~~p~~~~~~h~~~VeDV~~h~~-- 238 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKV-----------------------------VDPKTIFSGHEDVVEDVAWHPL-- 238 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCcc-----------------------------ccceEEeecCCcceehhhcccc--
Confidence 346777888898887443322111000 0112245678889999999864
Q ss_pred eEEEEecCCcEEEEEecCCceEeeecccc--c---eecCCCCeE-EEEEccC-CCEEEEEecCCeEEEEEcCCCCceeEE
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKI--D---KELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRT 294 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~--~---~~~gh~~~v-~va~spd-g~lLAsGs~DgtV~vwd~~~~~~~~~~ 294 (1124)
+-.++.+.++|+.+.+||..+. + ...+|+..+ |++|||- +-+||+|+.|++|++||+++-...+++
T Consensus 239 -------h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~ 311 (422)
T KOG0264|consen 239 -------HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT 311 (422)
T ss_pred -------chhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee
Confidence 2334444556666677887742 1 126899999 9999995 667999999999999999886666777
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCC-CEEEEEECCCcEEEEEcCCC--------------eeeEEeccCCcCceeeeEEc
Q 001202 295 VSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGC--------------RLMSTIRQISLSSISSPIVK 359 (1124)
Q Consensus 295 l~~~~~g~~~~h~g~V~~lawSPDG-~~Lasgs~Dg~I~vWdv~~~--------------~l~~tl~~h~~~~V~s~~~s 359 (1124)
+. + |...|.+|.|||+. ..|||++.|+.+.|||+..- .++.+-.|| ...|+...|+
T Consensus 312 ~e----~----H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH-~~kV~DfsWn 382 (422)
T KOG0264|consen 312 FE----G----HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGH-TAKVSDFSWN 382 (422)
T ss_pred cc----C----CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCc-ccccccccCC
Confidence 76 5 99999999999975 59999999999999999532 223444555 6667777777
Q ss_pred CCC
Q 001202 360 PNQ 362 (1124)
Q Consensus 360 p~~ 362 (1124)
|+.
T Consensus 383 p~e 385 (422)
T KOG0264|consen 383 PNE 385 (422)
T ss_pred CCC
Confidence 765
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.62 E-value=6.3e-14 Score=146.34 Aligned_cols=217 Identities=13% Similarity=0.166 Sum_probs=161.8
Q ss_pred CCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee------------------cCCCCeE-EEEEc
Q 001202 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------------------LGSGDAV-CASIA 265 (1124)
Q Consensus 205 ~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~------------------~gh~~~v-~va~s 265 (1124)
..|++.|..+...+ ..|+++++|+.|+.+.+||..+.... .+|.-+| .+-|-
T Consensus 40 r~HgGsvNsL~id~---------tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDL---------TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWY 110 (397)
T ss_pred ccCCCccceeeecc---------ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEe
Confidence 35678888777664 46999999999999999998754311 3566677 77676
Q ss_pred c-CCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCC---CCEEEEEECCCcEEEEEcCCCee
Q 001202 266 P-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAFAVGWKSRGLTVWSVSGCRL 341 (1124)
Q Consensus 266 p-dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPD---G~~Lasgs~Dg~I~vWdv~~~~l 341 (1124)
| |...+.+++-|.+++|||.++ .+....++ -.+.|.+-+|||- -+.+|+|..|-.|++.|+.+|..
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnT-lQ~a~~F~---------me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~ 180 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNT-LQEAVDFK---------MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF 180 (397)
T ss_pred eecCceeecccccceEEEeeccc-ceeeEEee---------cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc
Confidence 6 777899999999999999987 55555555 5677999999994 45788899999999999999999
Q ss_pred eEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeee
Q 001202 342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIY 421 (1124)
Q Consensus 342 ~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~ 421 (1124)
.++|.|| ...|-++.|+|.. +.+. +||+.||++++||+..
T Consensus 181 sH~LsGH-r~~vlaV~Wsp~~----e~vL-----------------------------------atgsaDg~irlWDiRr 220 (397)
T KOG4283|consen 181 SHTLSGH-RDGVLAVEWSPSS----EWVL-----------------------------------ATGSADGAIRLWDIRR 220 (397)
T ss_pred eeeeccc-cCceEEEEeccCc----eeEE-----------------------------------EecCCCceEEEEEeec
Confidence 9999999 7778888887765 3322 4566666667776655
Q ss_pred cCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcE
Q 001202 422 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (1124)
Q Consensus 422 ~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~w 485 (1124)
...-..+...+.. ...++..+-..|++.|..+||+.||.++++.|.|..+ +|+..+|+-
T Consensus 221 asgcf~~lD~hn~-----k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 221 ASGCFRVLDQHNT-----KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ccceeEEeecccC-----ccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 4332222222111 0011122345799999999999999999999999999 999998874
No 135
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=9.5e-16 Score=176.39 Aligned_cols=236 Identities=18% Similarity=0.274 Sum_probs=191.3
Q ss_pred ecCCceEeeeccccceecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEE
Q 001202 237 VSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW 315 (1124)
Q Consensus 237 ~~d~~i~~wd~~~~~~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~law 315 (1124)
..+..+++|+.... ..|..++ |+..-..++.+++|+.|-.+-+|.+.. ...+..+. | |.++|.||.|
T Consensus 11 ~~~t~Lr~~~~~~~---~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k-p~~i~S~~----~----hespIeSl~f 78 (825)
T KOG0267|consen 11 KRATKLRVWDTREF---VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK-PNAITSLT----G----HESPIESLTF 78 (825)
T ss_pred eeeeccccccchhh---hhhhhhhceeeeeccceeeccCCCceeeccccccC-Cchhheee----c----cCCcceeeec
Confidence 33444567765442 5678888 888877789999999999999999977 33333444 5 9999999999
Q ss_pred CCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCC
Q 001202 316 TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS 392 (1124)
Q Consensus 316 SPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~ 392 (1124)
+++...|++|+.+|+|++||+..++.+.+|.+| ...+.++.|+|.+ ++.++|+ ...+||..-.-+.....+|
T Consensus 79 ~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh-~~~~~sv~f~P~~----~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~ 153 (825)
T KOG0267|consen 79 DTSERLLAAGSASGTIKVWDLEEAKIVRTLTGH-LLNITSVDFHPYG----EFFASGSTDTDLKIWDIRKKGCSHTYKSH 153 (825)
T ss_pred CcchhhhcccccCCceeeeehhhhhhhhhhhcc-ccCcceeeeccce----EEeccccccccceehhhhccCceeeecCC
Confidence 999999999999999999999999999999998 7889999999998 8888887 7789999876777777777
Q ss_pred cceE--EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEE
Q 001202 393 SERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAV 469 (1124)
Q Consensus 393 ~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAv 469 (1124)
...+ ..|++ |+.+++++.|.++++|++..|+- ...|.+|.++|.++.|+|..-.++.
T Consensus 154 ~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~--------------------~~ef~~~e~~v~sle~hp~e~Lla~ 213 (825)
T KOG0267|consen 154 TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL--------------------SKEFKSHEGKVQSLEFHPLEVLLAP 213 (825)
T ss_pred cceeEEEeecCCCceeeccCCcceeeeeccccccc--------------------ccccccccccccccccCchhhhhcc
Confidence 6554 67777 88999999999999999887765 5678899999999999999999999
Q ss_pred EcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecCCEEEEE
Q 001202 470 AGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVC 512 (1124)
Q Consensus 470 ag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~ 512 (1124)
||.|+++ +||+.+ ..+.+...++ ..-|.+..+..+..++.
T Consensus 214 Gs~d~tv~f~dlet--fe~I~s~~~~-~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 214 GSSDRTVRFWDLET--FEVISSGKPE-TDGVRSLAFNPDGKIVL 254 (825)
T ss_pred CCCCceeeeeccce--eEEeeccCCc-cCCceeeeecCCceeee
Confidence 9999999 999975 2334433333 23366777776665554
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.61 E-value=6.3e-13 Score=149.74 Aligned_cols=280 Identities=11% Similarity=0.038 Sum_probs=166.4
Q ss_pred eEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEE-EEEeCCCeEEEEEeeecCceeecCCCC
Q 001202 32 GLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLI-AVVTSSLYLHIFKVQITEKSIQIGGKQ 109 (1124)
Q Consensus 32 ~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~L-av~t~dg~l~i~~v~~~~~~~~~~~~~ 109 (1124)
.+|++.+ ++.+.+|+.. .+..+..+. .++....++|+|||+.+ ++++.++.|++|++..+.......
T Consensus 2 ~~~~s~~~d~~v~~~d~~-t~~~~~~~~-------~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTA-TLEVTRTFP-------VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--- 70 (300)
T ss_pred cEEEEecCCCEEEEEECC-CCceEEEEE-------CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---
Confidence 4666655 5689999985 443333321 12334579999999987 456778999999987543210000
Q ss_pred CCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEe-cCCcEEEEeccCccccce-eeccCCCCccccccccccCC
Q 001202 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAF-ELVHSSNDSSVAALSHHFPS 187 (1124)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t-~dg~v~~~~Wd~~~~~~~-~l~~~~~~~~~i~~i~fs~~ 187 (1124)
. .......++.++++.+++++ .++.+.+|+.. ..... .+. . ......+.++++
T Consensus 71 ------------------~-~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~--~~~~~~~~~---~-~~~~~~~~~~~d 125 (300)
T TIGR03866 71 ------------------S-GPDPELFALHPNGKILYIANEDDNLVTVIDIE--TRKVLAEIP---V-GVEPEGMAVSPD 125 (300)
T ss_pred ------------------C-CCCccEEEECCCCCEEEEEcCCCCeEEEEECC--CCeEEeEee---C-CCCcceEEECCC
Confidence 0 00112234556677676655 47777765443 22211 111 1 112344566677
Q ss_pred CCcc-cccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEe-cCCceEeeecccccee---cC-----C-
Q 001202 188 NGLA-SVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKIDKE---LG-----S- 256 (1124)
Q Consensus 188 ~ql~-s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~-~d~~i~~wd~~~~~~~---~g-----h- 256 (1124)
++.. .....+.... .+......+............+.+++||+.+++++ .++.+.+||..+++.. .. +
T Consensus 126 g~~l~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~ 204 (300)
T TIGR03866 126 GKIVVNTSETTNMAH-FIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHP 204 (300)
T ss_pred CCEEEEEecCCCeEE-EEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccccc
Confidence 6632 2222211111 11222222221111122334678889999876554 5888999998876542 11 1
Q ss_pred --CCeEEEEEccCCCEEEE-EecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE-CCCcEE
Q 001202 257 --GDAVCASIAPEQQILAV-GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLT 332 (1124)
Q Consensus 257 --~~~v~va~spdg~lLAs-Gs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs-~Dg~I~ 332 (1124)
..+..++|+|+++.+.+ .+.++.+.+||+.+ ++....+. +.+.+.+++|+|||+.|+++. .++.|+
T Consensus 205 ~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~-~~~~~~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~i~ 274 (300)
T TIGR03866 205 EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT-YEVLDYLL---------VGQRVWQLAFTPDEKYLLTTNGVSNDVS 274 (300)
T ss_pred ccCCccceEECCCCCEEEEEcCCCCeEEEEECCC-CcEEEEEE---------eCCCcceEEECCCCCEEEEEcCCCCeEE
Confidence 11236889999997544 34567899999986 66555443 345689999999999998874 589999
Q ss_pred EEEcCCCeeeEEeccCCcCceeeeEEcC
Q 001202 333 VWSVSGCRLMSTIRQISLSSISSPIVKP 360 (1124)
Q Consensus 333 vWdv~~~~l~~tl~~h~~~~V~s~~~sp 360 (1124)
|||+.+++++.+++.+ ...++++++|
T Consensus 275 v~d~~~~~~~~~~~~~--~~~~~~~~~~ 300 (300)
T TIGR03866 275 VIDVAALKVIKSIKVG--RLPWGVVVRP 300 (300)
T ss_pred EEECCCCcEEEEEEcc--cccceeEeCC
Confidence 9999999988888653 3345555543
No 137
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=2.5e-13 Score=143.66 Aligned_cols=267 Identities=14% Similarity=0.186 Sum_probs=185.8
Q ss_pred CCCceE--EEEeeCCe-EEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEE
Q 001202 19 PSSQQI--IYFKVNNG-LLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFK 95 (1124)
Q Consensus 19 ~~~~~i--v~fS~dg~-llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~ 95 (1124)
|....| |.|+|.+. |||+.-|++++++++. ..... ..+.+.++..+.+|-++ ..+++++.||.|+.||
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~-~~~l~-------~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~D 81 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVP-ANSLK-------LKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYD 81 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEecc-chhhh-------hheecCCceeeeeccCC-ceEEEeccCceEEEEE
Confidence 334444 78888854 7777889999999996 22111 12445678899999885 6889999999999999
Q ss_pred eeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeec--CCeEEEEecCCcEEEEeccCccccceeeccCC
Q 001202 96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFELVHSS 173 (1124)
Q Consensus 96 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d--~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~ 173 (1124)
+.++... .++.+...+.||... .+.+++|+.|+.|.. ||+......
T Consensus 82 ln~~~~~------------------------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~--wD~R~~~~~------ 129 (323)
T KOG1036|consen 82 LNTGNED------------------------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKF--WDPRNKVVV------ 129 (323)
T ss_pred ecCCcce------------------------eeccCCCceEEEEeeccCCeEEEcccCccEEE--Eeccccccc------
Confidence 9876431 123344567776654 567888999999987 665421110
Q ss_pred CCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee
Q 001202 174 NDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE 253 (1124)
Q Consensus 174 ~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~ 253 (1124)
........|.++ +-.|..++++..+..+.+||..+....
T Consensus 130 -----------------------------~~~d~~kkVy~~------------~v~g~~LvVg~~~r~v~iyDLRn~~~~ 168 (323)
T KOG1036|consen 130 -----------------------------GTFDQGKKVYCM------------DVSGNRLVVGTSDRKVLIYDLRNLDEP 168 (323)
T ss_pred -----------------------------cccccCceEEEE------------eccCCEEEEeecCceEEEEEcccccch
Confidence 001112244333 345788888888999999998764322
Q ss_pred -----cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCC---ceeEEEeeccCC-CCCCCCCCeEEEEECCCCCEEE
Q 001202 254 -----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA---SLIRTVSLYDWG-YSMDDTGPVSCIAWTPDNSAFA 323 (1124)
Q Consensus 254 -----~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~---~~~~~l~~~~~g-~~~~h~g~V~~lawSPDG~~La 323 (1124)
..-.-.+ |++..|.+.-.|+++-||.|.+=.+++.. +....++-+..- ...+---||++|+|+|--..||
T Consensus 169 ~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfa 248 (323)
T KOG1036|consen 169 FQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFA 248 (323)
T ss_pred hhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEE
Confidence 2233456 99999998889999999999987776621 222233321110 0011234799999999989999
Q ss_pred EEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEe
Q 001202 324 VGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (1124)
Q Consensus 324 sgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg 372 (1124)
||+.||.|.+||.+..+.++.+... ..+|.+++|+.+| ..++.+
T Consensus 249 TgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG----~~LAia 292 (323)
T KOG1036|consen 249 TGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMDG----SLLAIA 292 (323)
T ss_pred ecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccCC----CeEEEE
Confidence 9999999999999999888888776 5679999999988 666643
No 138
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.61 E-value=5.3e-13 Score=150.32 Aligned_cols=224 Identities=13% Similarity=0.155 Sum_probs=152.3
Q ss_pred EEEecCCcEE-EEEecCCceEeeecccccee---cCCCCeEEEEEccCCCEEEE-EecCCeEEEEEcCCCCceeEEEeec
Q 001202 224 FVLYSNGQLM-SCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAV-GTRRGVVELYDLAESASLIRTVSLY 298 (1124)
Q Consensus 224 ~~~s~dG~~~-~~~~~d~~i~~wd~~~~~~~---~gh~~~v~va~spdg~lLAs-Gs~DgtV~vwd~~~~~~~~~~l~~~ 298 (1124)
+++++||+.+ +++..++.+.+||..+++.. ..+.+...++++|+++.+++ ++.|+++++||+.+ .+.+..+.
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~-- 112 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAEIP-- 112 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeEee--
Confidence 4556888865 45567888999998766543 23334448899999997755 45689999999987 55555544
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEECCC-cEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceE-EEe---e
Q 001202 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSG---T 373 (1124)
Q Consensus 299 ~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg-~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l-~sg---~ 373 (1124)
+...+.+++|+|||..+++++.++ .+.+||..++.....+... ....+++|+|++ +.+ +++ .
T Consensus 113 -------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~~~ 179 (300)
T TIGR03866 113 -------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD--QRPRFAEFTADG----KELWVSSEIGG 179 (300)
T ss_pred -------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC--CCccEEEECCCC----CEEEEEcCCCC
Confidence 233468899999999999998875 4677899888776654332 235678899998 555 343 2
Q ss_pred eEEEEeCCCCeEEEEecCC-----cceE----EEEec-cceE-EeeccCCceeeeEeeecCCeEEEeecCCCccceeeec
Q 001202 374 SMMQWDEYGYRLYAIEEGS-----SERV----LIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (1124)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~-----~~~v----~~~s~-~k~~-~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~ 442 (1124)
.+.+|+.++++.......+ ...+ ..+++ ++.+ ++.+.++.+.+|+...+...
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~----------------- 242 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL----------------- 242 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-----------------
Confidence 7899999988765543211 1111 34555 5543 34445567788876443221
Q ss_pred ccceeeccCCCceEEEEEccCCCEEEEE-cCCCeE-EEEcCCCc
Q 001202 443 NLPVSYISQNWPVQHVAASKDGMFLAVA-GLHGLI-LYDIRQKK 484 (1124)
Q Consensus 443 ~~p~~~~~~~~~I~~va~SpdG~~lAva-g~dG~v-lwd~~sg~ 484 (1124)
....+...+.+++|+|+|++|+++ +.+|.+ +||+.+++
T Consensus 243 ----~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 243 ----DYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred ----EEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 111223368899999999999986 568999 99999876
No 139
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=5.5e-14 Score=155.52 Aligned_cols=236 Identities=16% Similarity=0.212 Sum_probs=170.2
Q ss_pred cEEEEEe-cCCceEeeeccccceec---CCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCC
Q 001202 231 QLMSCSV-SKKGLKLAEFIKIDKEL---GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (1124)
Q Consensus 231 ~~~~~~~-~d~~i~~wd~~~~~~~~---gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~ 305 (1124)
.+++++. ....+.+|...+..... -..+.+ |++-+|.|.+|+.|+..|.+.+|.+.+ |.++..+. +
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~----a---- 121 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVLS----A---- 121 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHHH----h----
Confidence 3444333 34456677765443221 123567 999999999999999999999999998 88877776 3
Q ss_pred CCCCeEEEEECCCCCEEEEEECCCcEEEEEcC---------CCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---
Q 001202 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS---------GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (1124)
Q Consensus 306 h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~---------~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~--- 373 (1124)
|=.+|+|+.||-||.+|+|||.||.|.+|++. +-..++.+.+| +-+|+++...+.+ ....+.|.+
T Consensus 122 HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H-tlsITDl~ig~Gg--~~~rl~TaS~D~ 198 (476)
T KOG0646|consen 122 HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH-TLSITDLQIGSGG--TNARLYTASEDR 198 (476)
T ss_pred hccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC-cceeEEEEecCCC--ccceEEEecCCc
Confidence 88899999999999999999999999999873 34567788877 6789998887765 224566655
Q ss_pred eEEEEeCCCCeEEEEecC-CcceEEEEec-cceEEeeccCCceeeeEeeecCC-eE-EEeecCCCccceeeecccceeec
Q 001202 374 SMMQWDEYGYRLYAIEEG-SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGED-RL-LVVQSEDTDELKILHLNLPVSYI 449 (1124)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~-~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~-~l-~l~~~~~~~~~~w~~~~~p~~~~ 449 (1124)
++++|+...+.++....- ..-.-+++++ .+.+..|+.+|.+.+-.+.+... +. ...++. .-+.. ....+.
T Consensus 199 t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~-----~~~~t-~~~~~~ 272 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGR-----HEENT-QINVLV 272 (476)
T ss_pred eEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccc-----ccccc-eeeeec
Confidence 999999999998876533 2222367777 56677888888876655433221 00 000000 00011 123567
Q ss_pred cCCC--ceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 450 SQNW--PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 450 ~~~~--~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
||.+ +|+|+++|-||..|++|+.||.+ +||+.+++
T Consensus 273 Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 273 GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 8888 99999999999999999999999 99998864
No 140
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.59 E-value=1.4e-13 Score=143.79 Aligned_cols=290 Identities=18% Similarity=0.237 Sum_probs=181.0
Q ss_pred cceEEEEeec---CCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCC
Q 001202 132 GLSVSNIVSD---NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPIS 208 (1124)
Q Consensus 132 ~~~v~~i~~d---~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~ 208 (1124)
.++|.++..+ +.+|+.|..||.+.+|+..... .++ ++.-+...-.. ..+..-..|+
T Consensus 43 gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t--~~e------~s~li~k~~c~-------------v~~~h~~~Hk 101 (397)
T KOG4283|consen 43 GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNAT--DYE------ASGLIAKHKCI-------------VAKQHENGHK 101 (397)
T ss_pred CCccceeeeccccceEEeecCCCccEEEEEecccc--chh------hccceeheeee-------------ccccCCccce
Confidence 3456665554 4689999999999886544322 110 00000000000 0011234667
Q ss_pred ceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee--cCCCCeE-EEEEccC---CCEEEEEecCCeEEE
Q 001202 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPE---QQILAVGTRRGVVEL 282 (1124)
Q Consensus 209 ~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~--~gh~~~v-~va~spd---g~lLAsGs~DgtV~v 282 (1124)
..|.++.|-|- |.-.+.+++-|.++|+||..+.+.. ..-.+.| +-++||- ..+||+|..|-.|++
T Consensus 102 y~iss~~WyP~---------DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrL 172 (397)
T KOG4283|consen 102 YAISSAIWYPI---------DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRL 172 (397)
T ss_pred eeeeeeEEeee---------cCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEE
Confidence 77777666542 4445666778999999999876543 2234556 7778873 569999999999999
Q ss_pred EEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCC-EEEEEECCCcEEEEEcCCC-eeeEEeccCC-----------
Q 001202 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGC-RLMSTIRQIS----------- 349 (1124)
Q Consensus 283 wd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~-~Lasgs~Dg~I~vWdv~~~-~l~~tl~~h~----------- 349 (1124)
.|+.. +...++++ | |.+.|.+|.|||... .||+|+.||.|++||+... .++.++..|.
T Consensus 173 CDi~S-Gs~sH~Ls----G----Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ 243 (397)
T KOG4283|consen 173 CDIAS-GSFSHTLS----G----HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNT 243 (397)
T ss_pred EeccC-Ccceeeec----c----ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccc
Confidence 99998 99999999 7 999999999999766 7899999999999999654 4555555542
Q ss_pred --cCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecC---CcceE-EEEeccceEEeeccCCceeeeEee
Q 001202 350 --LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG---SSERV-LIFSFGKCCLNRGVSGMTYARQVI 420 (1124)
Q Consensus 350 --~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~---~~~~v-~~~s~~k~~~s~s~d~~v~~w~l~ 420 (1124)
.+.|++++|..++ ..+.+.. .++.|+.+.++--....+ |...+ ..+. +. +.+..+. .+.
T Consensus 244 ah~gkvngla~tSd~----~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-----~~-~~~s~vf--v~~ 311 (397)
T KOG4283|consen 244 AHYGKVNGLAWTSDA----RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-----IQ-SMDSDVF--VLF 311 (397)
T ss_pred cccceeeeeeecccc----hhhhhccCccceEEeecccCcccccccccccccccccceEE-----Ee-ecccceE--EEE
Confidence 3457778887777 5555433 788898877653332221 11111 1111 11 1111111 111
Q ss_pred ecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEc
Q 001202 421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 421 ~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~ 480 (1124)
..+..++++...+.. ....+..|-..|.|.++-|+=+...+|..||.+ .|..
T Consensus 312 p~~~~lall~~~sgs--------~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 312 PNDGSLALLNLLEGS--------FVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ecCCeEEEEEccCce--------EEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 112333333221111 123344566678999999999999999999999 8876
No 141
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.59 E-value=1.2e-14 Score=155.58 Aligned_cols=270 Identities=10% Similarity=0.070 Sum_probs=184.6
Q ss_pred ceeEEEEecCC-cEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEE
Q 001202 69 ENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLL 147 (1124)
Q Consensus 69 ~~~~v~wSPDg-~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv 147 (1124)
.+.+++=-|.. ..+|+|+.||.|+|||+..... ...+..+.+.|..|..+.+.++.
T Consensus 68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-----------------------~~~f~AH~G~V~Gi~v~~~~~~t 124 (433)
T KOG0268|consen 68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-----------------------IRTFKAHEGLVRGICVTQTSFFT 124 (433)
T ss_pred ccchhhcCcchhhhhhccccCceEEEEehhhhhh-----------------------hheeecccCceeeEEecccceEE
Confidence 34566666665 6899999999999999975322 11234556677777778888999
Q ss_pred EecCCcEEEEeccCccccceeeccCCCCccccccccc-cCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEE
Q 001202 148 GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHH-FPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (1124)
Q Consensus 148 ~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~f-s~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~ 226 (1124)
+++|.+|..|..++.....+- + ...+.-+.. +.++-.++.+ .-..+|......++.++.|-.+...++-+
T Consensus 125 vgdDKtvK~wk~~~~p~~til--g----~s~~~gIdh~~~~~~FaTcG---e~i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 125 VGDDKTVKQWKIDGPPLHTIL--G----KSVYLGIDHHRKNSVFATCG---EQIDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred ecCCcceeeeeccCCcceeee--c----cccccccccccccccccccC---ceeeecccccCCccceeecCCCceeEEec
Confidence 999999998766653211110 0 000000110 1111122222 23445666778899999988887778888
Q ss_pred ecCC-cEEEEEecCCceEeeeccccceec--CCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCC
Q 001202 227 YSNG-QLMSCSVSKKGLKLAEFIKIDKEL--GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (1124)
Q Consensus 227 s~dG-~~~~~~~~d~~i~~wd~~~~~~~~--gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~ 302 (1124)
+|-- .+++++..|+++-++|..++..+. --+-.+ .++|||.+-.+++|..|..+..||+..-...+.... +
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~----d- 270 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK----D- 270 (433)
T ss_pred CCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhc----c-
Confidence 8865 466677799999999988765431 112234 789999888899999999999999876333333333 4
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEe
Q 001202 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (1124)
Q Consensus 303 ~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~ 379 (1124)
|..+|.+|+|||.|+-+++||.|++|+|+.+..+.-......-....|.++.||-|. ++++||+ .+++|-
T Consensus 271 ---hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds----kyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 271 ---HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS----KYIISGSDDGNVRLWK 343 (433)
T ss_pred ---cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc----cEEEecCCCcceeeee
Confidence 999999999999999999999999999999987653332222113457788888777 7777776 666775
Q ss_pred CCC
Q 001202 380 EYG 382 (1124)
Q Consensus 380 ~~~ 382 (1124)
...
T Consensus 344 a~A 346 (433)
T KOG0268|consen 344 AKA 346 (433)
T ss_pred cch
Confidence 543
No 142
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.58 E-value=2.2e-13 Score=144.57 Aligned_cols=221 Identities=13% Similarity=0.181 Sum_probs=154.3
Q ss_pred cEEEEEecCCceEeeeccccce---ecCCCCeE-EEEEccCC-CEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCC
Q 001202 231 QLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (1124)
Q Consensus 231 ~~~~~~~~d~~i~~wd~~~~~~---~~gh~~~v-~va~spdg-~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~ 305 (1124)
-+++.++..+.|++.|..+.+. ..||++++ .+.+.|+. +++.+||.|.+||+|++.+ ..++..+. | -.+
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~-~~Cv~VfG----G-~eg 179 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT-DVCVAVFG----G-VEG 179 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC-CeEEEEec----c-ccc
Confidence 3455566778899998887654 37999999 99999974 7899999999999999998 77777665 2 235
Q ss_pred CCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEecc---------------------------CCcCceeeeEE
Q 001202 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ---------------------------ISLSSISSPIV 358 (1124)
Q Consensus 306 h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~---------------------------h~~~~V~s~~~ 358 (1124)
|.+.|.++.|++||.+|||++.|..+++|++...+....++- .|.+.|.++.|
T Consensus 180 HrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw 259 (385)
T KOG1034|consen 180 HRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW 259 (385)
T ss_pred ccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH
Confidence 999999999999999999999999999999974332111110 01222222222
Q ss_pred cCCCCCCcceEEEee---eEEEEeCCCCe-E-------------EEEecCCcceEE----EEec-cceEEeeccCCceee
Q 001202 359 KPNQDCKYEPLMSGT---SMMQWDEYGYR-L-------------YAIEEGSSERVL----IFSF-GKCCLNRGVSGMTYA 416 (1124)
Q Consensus 359 sp~~~~~~~~l~sg~---~i~~W~~~~~~-l-------------~~~~~~~~~~v~----~~s~-~k~~~s~s~d~~v~~ 416 (1124)
- + ++++|-+ .+..|-+...+ - +....-....+| ++++ .+.++.|+..|.+.+
T Consensus 260 ~--g----d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 260 F--G----DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred H--h----hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 1 1 3455533 88899883211 1 111111122342 3333 888999999999999
Q ss_pred eEeeecCCeEEEeecCCCccceeeecccceeec--cCCCceEEEEEccCCCEEEEEcCCCeE-EEEcC
Q 001202 417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI--SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (1124)
Q Consensus 417 w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~--~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~ 481 (1124)
|++...+.. .++ ++. .....|++.+||.||..|+....||+| -||..
T Consensus 334 wdL~~~ep~-----------------~~t-tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 334 WDLDNNEPP-----------------KCT-TLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EECCCCCCc-----------------cCc-eEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 998776551 011 121 234579999999999999999999999 88854
No 143
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=3.1e-13 Score=149.19 Aligned_cols=273 Identities=18% Similarity=0.269 Sum_probs=181.7
Q ss_pred ceEEEEeeCCeEEEEEc-CCcEEEEecCCCce--eEEEEeeChHHHhhhcceeEEEEecCCc-EEEEEeCCCeEEEEEee
Q 001202 22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQHKV--RLGKYKRDSESVQREGENLQAVWSPDTK-LIAVVTSSLYLHIFKVQ 97 (1124)
Q Consensus 22 ~~iv~fS~dg~llA~~~-~~~l~IW~~~~~~~--~l~~~~r~~~sl~~~G~~~~v~wSPDg~-~Lav~t~dg~l~i~~v~ 97 (1124)
-..|+|-|...++.+++ +++++|+.++ ..+ .+.+.. + ..-++.+++|.|+|+ .+++++...++..||+.
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvD-Gk~N~~lqS~~-----l-~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVD-GKVNPKLQSIH-----L-EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEec-CccChhheeee-----e-ccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 35589999998877766 7799999986 221 111111 1 234677899999999 89999999999999998
Q ss_pred ecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCc-cccceeeccCCCCc
Q 001202 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGE-FYGAFELVHSSNDS 176 (1124)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~-~~~~~~l~~~~~~~ 176 (1124)
+.+-... +..-+..- ....-..+++++..+++.+.+|.|+++.-... ....+
T Consensus 289 ~ak~~k~---~~~~g~e~---------------~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~--------- 341 (514)
T KOG2055|consen 289 TAKVTKL---KPPYGVEE---------------KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF--------- 341 (514)
T ss_pred ccccccc---cCCCCccc---------------chhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee---------
Confidence 7642111 11100000 00112345667889999999999998753321 11111
Q ss_pred cccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---
Q 001202 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--- 253 (1124)
Q Consensus 177 ~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~--- 253 (1124)
.-.+.|.++.|+ +||+.++..+.++.+.+||.....+.
T Consensus 342 -----------------------------KieG~v~~~~fs----------Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 342 -----------------------------KIEGVVSDFTFS----------SDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred -----------------------------eeccEEeeEEEe----------cCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 123455554444 88888888888889999998876543
Q ss_pred --cCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCC-----CceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE
Q 001202 254 --LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES-----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (1124)
Q Consensus 254 --~gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~-----~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs 326 (1124)
.|....++++.|++++++|+|+..|.|.|||.++. .+++.++. +-+-.|++++|+||++.||.+|
T Consensus 383 ~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d--------NLtt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 383 VDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD--------NLTTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred eecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh--------hhheeeeeeeeCcchhhhhhhh
Confidence 34444557888899999999999999999996541 12233322 1345699999999999888877
Q ss_pred C--CCcEEEEEcCCCeeeEEeccC--CcCceeeeEEcCCCCCCcceEEEee---eEEEEe
Q 001202 327 K--SRGLTVWSVSGCRLMSTIRQI--SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (1124)
Q Consensus 327 ~--Dg~I~vWdv~~~~l~~tl~~h--~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~ 379 (1124)
. +..+|+=.+.++.....+... ....|++++|+|.+ .+++-|. .+.+|-
T Consensus 455 ~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s----G~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 455 RVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS----GYLAVGNEAGRVHLFK 510 (514)
T ss_pred hccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC----ceEEeecCCCceeeEe
Confidence 5 578999888877666555431 13458888888876 5555443 455554
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=8.5e-13 Score=139.18 Aligned_cols=249 Identities=14% Similarity=0.132 Sum_probs=163.6
Q ss_pred EEEecCCcEEEEEecCCceEeeeccccc-------eecCCCCeE-EEEEccC--CCEEEEEecCCeEEEEEcCCC-----
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID-------KELGSGDAV-CASIAPE--QQILAVGTRRGVVELYDLAES----- 288 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~-------~~~gh~~~v-~va~spd--g~lLAsGs~DgtV~vwd~~~~----- 288 (1124)
+.+..-|+.+++++.|.++++||..... .|..|.+.+ .|.|.+- |+.+|++|.|++++||.-...
T Consensus 19 Vs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~ 98 (361)
T KOG2445|consen 19 VSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH 98 (361)
T ss_pred eeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccc
Confidence 3444779999999999999999954321 247899999 8888653 899999999999999986321
Q ss_pred C-ceeEEEeeccCCCCCCCCCCeEEEEECCC--CCEEEEEECCCcEEEEEcCCC------eeeEEec------cCCcCce
Q 001202 289 A-SLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGC------RLMSTIR------QISLSSI 353 (1124)
Q Consensus 289 ~-~~~~~l~~~~~g~~~~h~g~V~~lawSPD--G~~Lasgs~Dg~I~vWdv~~~------~l~~tl~------~h~~~~V 353 (1124)
+ +-++.-.+. +..+.|++|.|.|- |-.||+++.||++|||..-.. .+++.+. +......
T Consensus 99 ~~~Wv~~ttl~------DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~ 172 (361)
T KOG2445|consen 99 GRRWVRRTTLV------DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPC 172 (361)
T ss_pred cceeEEEEEee------cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcc
Confidence 1 112211221 25788999999994 889999999999999987432 2222222 1113455
Q ss_pred eeeEEcCCCCCCcceEEEee--------eEEEEeCC-CC-eEEE--EecCCcceEEEEec----cc---eEEeeccCCce
Q 001202 354 SSPIVKPNQDCKYEPLMSGT--------SMMQWDEY-GY-RLYA--IEEGSSERVLIFSF----GK---CCLNRGVSGMT 414 (1124)
Q Consensus 354 ~s~~~sp~~~~~~~~l~sg~--------~i~~W~~~-~~-~l~~--~~~~~~~~v~~~s~----~k---~~~s~s~d~~v 414 (1124)
.++.|+|.. ...+.++-|+ .+.+|.-. ++ +... ...+|.+.|..+++ |+ .+++++.|| +
T Consensus 173 ~CvsWn~sr-~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v 250 (361)
T KOG2445|consen 173 FCVSWNPSR-MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-V 250 (361)
T ss_pred eEEeecccc-ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-E
Confidence 667777542 1114455444 45666543 22 3322 34578888855444 44 578899998 9
Q ss_pred eeeEeeecCCeEEEeecCCCccc-eeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcC
Q 001202 415 YARQVIYGEDRLLVVQSEDTDEL-KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (1124)
Q Consensus 415 ~~w~l~~~~~~l~l~~~~~~~~~-~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~ 481 (1124)
++|.+......+ ...+...++. .-..++....+-+|+++|+.+.|+-.|..|++.|.||.+ +|..+
T Consensus 251 ~I~~v~~~~s~i-~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 251 RIFKVKVARSAI-EEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEEEeeccchh-hhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 999876433222 0011111111 112233445678999999999999999999999999999 99753
No 145
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=7e-13 Score=150.04 Aligned_cols=295 Identities=18% Similarity=0.234 Sum_probs=166.9
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCC--EEEEEECCCc
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRG 330 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~--~Lasgs~Dg~ 330 (1124)
.||++.| |+++.|.|.+||+|+.||+||||.+.+ +.+++++. -.+.|.||+|+|.+. .||++-.+.
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~---------~d~~I~~vaw~P~~~~~vLAvA~~~~- 465 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQ---------FDSEIRSVAWNPLSDLCVLAVAVGEC- 465 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEe---------ecceeEEEEecCCCCceeEEEEecCc-
Confidence 6999999 999999999999999999999999999 99999887 456799999999775 677776655
Q ss_pred EEEEEc-CCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCC----CeEEEEecCCcceEEEEec---c
Q 001202 331 LTVWSV-SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYG----YRLYAIEEGSSERVLIFSF---G 402 (1124)
Q Consensus 331 I~vWdv-~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~----~~l~~~~~~~~~~v~~~s~---~ 402 (1124)
+.|-+. .|-++..-... ....+ .|+.. ..- ..+..|.... ..-+.+.-.|...|-++.. |
T Consensus 466 ~~ivnp~~G~~~e~~~t~---ell~~---~~~~~---~p~---~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTK---ELLAS---APNES---EPD---AAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred eEEeCccccchhhhcchh---hhhhc---CCCcc---CCc---ccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 444443 33221110000 00000 00100 000 1455676541 1111122234555644444 7
Q ss_pred ceEEeeccCCce---eeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeEEEE
Q 001202 403 KCCLNRGVSGMT---YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYD 479 (1124)
Q Consensus 403 k~~~s~s~d~~v---~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~vlwd 479 (1124)
.++++.+.++.. .+.++.... .|.|. ....+.|.++.|+|...++++|++....+||
T Consensus 534 DYlatV~~~~~~~~VliHQLSK~~------------------sQ~PF--~kskG~vq~v~FHPs~p~lfVaTq~~vRiYd 593 (733)
T KOG0650|consen 534 DYLATVMPDSGNKSVLIHQLSKRK------------------SQSPF--RKSKGLVQRVKFHPSKPYLFVATQRSVRIYD 593 (733)
T ss_pred ceEEEeccCCCcceEEEEeccccc------------------ccCch--hhcCCceeEEEecCCCceEEEEeccceEEEe
Confidence 777777765433 233322211 12343 3345678999999999999999999888999
Q ss_pred cCCCcEEEecCcCceeeeEEEEEEe--cCCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEeecC-CccEEEEeeCCE-
Q 001202 480 IRQKKWRVFGDITQEQKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLL-AKPIVMDVYEDY- 555 (1124)
Q Consensus 480 ~~sg~wk~f~~~~~e~~~~v~gl~W--~~~~liv~~~~~~~~~~elrly~~~~ld~~~~l~~~~l~-s~~l~l~~~~~~- 555 (1124)
+..++. . ....+...-+.+|+- .|+.+|++++.. .+..|+.+ +.+...- +..+. ...-.......+
T Consensus 594 L~kqel--v-KkL~tg~kwiS~msihp~GDnli~gs~d~-----k~~WfDld-lsskPyk-~lr~H~~avr~Va~H~ryP 663 (733)
T KOG0650|consen 594 LSKQEL--V-KKLLTGSKWISSMSIHPNGDNLILGSYDK-----KMCWFDLD-LSSKPYK-TLRLHEKAVRSVAFHKRYP 663 (733)
T ss_pred hhHHHH--H-HHHhcCCeeeeeeeecCCCCeEEEecCCC-----eeEEEEcc-cCcchhH-Hhhhhhhhhhhhhhccccc
Confidence 865431 0 000111122334444 468999987743 34444432 1111100 00000 001111222233
Q ss_pred -EEEEEcCCeEEEEEEEEecccCCCCCCcEEEEEEEE-------EeeeccccCCce
Q 001202 556 -ILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRE-------LSIMTAKSHPAA 603 (1124)
Q Consensus 556 -llv~~~d~~i~l~~~~~~~~~~~~~~~~i~l~~~~~-------i~i~~~~~hp~~ 603 (1124)
+..++.|+++.+|+-.+..++ ..++.|.+...-+ +-|.+.++||.-
T Consensus 664 Lfas~sdDgtv~Vfhg~VY~Dl--~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~q 717 (733)
T KOG0650|consen 664 LFASGSDDGTVIVFHGMVYNDL--LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQ 717 (733)
T ss_pred eeeeecCCCcEEEEeeeeehhh--hcCCceEeeeeccCceeecccceEeecccCCC
Confidence 333567799999998888776 4667766532211 225566677753
No 146
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=4.6e-12 Score=133.81 Aligned_cols=277 Identities=12% Similarity=0.096 Sum_probs=157.3
Q ss_pred CCceeecCCCCCCCCCceEEEEeeCCeEEEEE-cCCcEEEEecCCCceeEEEEeeChHHHh-hhcceeEEEEecCCcEEE
Q 001202 6 GWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQ-REGENLQAVWSPDTKLIA 83 (1124)
Q Consensus 6 g~P~~l~~~~~~~~~~~~iv~fS~dg~llA~~-~~~~l~IW~~~~~~~~l~~~~r~~~sl~-~~G~~~~v~wSPDg~~La 83 (1124)
-+|..+.. +-.++. ...+.||+-|.++|++ .++.|.|||.. .. |...-+. +--++.+++|||||+.|.
T Consensus 12 ~~PEel~~-tld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~-T~-------~iar~lsaH~~pi~sl~WS~dgr~Ll 81 (405)
T KOG1273|consen 12 EYPEELTH-TLDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFD-TF-------RIARMLSAHVRPITSLCWSRDGRKLL 81 (405)
T ss_pred cChHhhce-eccCCc-cceEEeccCcceeeeeccCCcEEEEEcc-cc-------chhhhhhccccceeEEEecCCCCEee
Confidence 45664431 111334 6678899999999995 56789999996 21 1112222 335678999999999999
Q ss_pred EEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEe-cCCcEEEEeccCc
Q 001202 84 VVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGE 162 (1124)
Q Consensus 84 v~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t-~dg~v~~~~Wd~~ 162 (1124)
+++.|..+.+||+..+......... .++....|.+. .....+++ -+-.-+++..+..
T Consensus 82 tsS~D~si~lwDl~~gs~l~rirf~----spv~~~q~hp~------------------k~n~~va~~~~~sp~vi~~s~~ 139 (405)
T KOG1273|consen 82 TSSRDWSIKLWDLLKGSPLKRIRFD----SPVWGAQWHPR------------------KRNKCVATIMEESPVVIDFSDP 139 (405)
T ss_pred eecCCceeEEEeccCCCceeEEEcc----Cccceeeeccc------------------cCCeEEEEEecCCcEEEEecCC
Confidence 9999999999999866421111000 01112222221 11111111 1111111111110
Q ss_pred cccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCce
Q 001202 163 FYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL 242 (1124)
Q Consensus 163 ~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i 242 (1124)
.. +-.|-..++++. .++. ...+.+.|+++++|..+|-+
T Consensus 140 ~h---------------~~Lp~d~d~dln------------------------~sas---~~~fdr~g~yIitGtsKGkl 177 (405)
T KOG1273|consen 140 KH---------------SVLPKDDDGDLN------------------------SSAS---HGVFDRRGKYIITGTSKGKL 177 (405)
T ss_pred ce---------------eeccCCCccccc------------------------cccc---cccccCCCCEEEEecCcceE
Confidence 00 001111111110 0000 01344667777777777777
Q ss_pred Eeeeccccceec----CCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCC---C---ceeEEEeeccCCCCCCCCCCeE
Q 001202 243 KLAEFIKIDKEL----GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES---A---SLIRTVSLYDWGYSMDDTGPVS 311 (1124)
Q Consensus 243 ~~wd~~~~~~~~----gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~---~---~~~~~l~~~~~g~~~~h~g~V~ 311 (1124)
.+.+..+.++.. ....++ .+-|+.+|+.+++-+.|..||.|++.+- + .....-++.+.- .+-+-+
T Consensus 178 lv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvV----Nk~~Wk 253 (405)
T KOG1273|consen 178 LVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVV----NKLQWK 253 (405)
T ss_pred EEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHH----hhhhhh
Confidence 777766655431 123566 8899999999999999999999998641 1 100000000000 122346
Q ss_pred EEEECCCCCEEEEEECC-CcEEEEEcCCCeeeEEeccCCcCceeeeEEcC
Q 001202 312 CIAWTPDNSAFAVGWKS-RGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (1124)
Q Consensus 312 ~lawSPDG~~Lasgs~D-g~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp 360 (1124)
+++||.||.+++.|+.. ..+.||....|.++..|.|........+.|+|
T Consensus 254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp 303 (405)
T KOG1273|consen 254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP 303 (405)
T ss_pred heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc
Confidence 88999999999887754 78999999999999999775223333344443
No 147
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.48 E-value=1.2e-12 Score=142.06 Aligned_cols=171 Identities=17% Similarity=0.252 Sum_probs=120.5
Q ss_pred CCCCCCeEEEEECC-CCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCC
Q 001202 304 MDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYG 382 (1124)
Q Consensus 304 ~~h~g~V~~lawSP-DG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~ 382 (1124)
.+|+++|..++|+| +.+.|||||+|.+|.||.+..+.+...+.
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------------------------------ 121 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------------------------------ 121 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------------------------------------
Confidence 35999999999999 56799999999999999997654432221
Q ss_pred CeEEEEecCCcceE--EEEec--cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEE
Q 001202 383 YRLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (1124)
Q Consensus 383 ~~l~~~~~~~~~~v--~~~s~--~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~v 458 (1124)
+....+.||..+| +++.+ ...++|++.|+++.+|++.+|+.- .+ +.|..-|.++
T Consensus 122 -epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeal--------------------i~-l~hpd~i~S~ 179 (472)
T KOG0303|consen 122 -EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEAL--------------------IT-LDHPDMVYSM 179 (472)
T ss_pred -cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCcee--------------------ee-cCCCCeEEEE
Confidence 1122233444444 44444 345678889999999999888872 22 2388899999
Q ss_pred EEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeCCCCCCc
Q 001202 459 AASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQS 534 (1124)
Q Consensus 459 a~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~~~ld~~ 534 (1124)
+|+.||.+++++++|..+ +||.++++.-.-+ ..||..-.. ...|.++..+........+..++-+|+.++|...
T Consensus 180 sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~-Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP 254 (472)
T KOG0303|consen 180 SFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPA-RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP 254 (472)
T ss_pred EeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCCcc-eeEEeccCceeeeccccccccceeccCcccccCc
Confidence 999999999999999999 9999998754433 344442222 3456655444433334456678888988766654
No 148
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.48 E-value=6.5e-13 Score=143.29 Aligned_cols=222 Identities=13% Similarity=0.112 Sum_probs=141.5
Q ss_pred HHhhhcceeEEEEec--CCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEee
Q 001202 63 SVQREGENLQAVWSP--DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS 140 (1124)
Q Consensus 63 sl~~~G~~~~v~wSP--Dg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 140 (1124)
++.++|.+..+.-+| +....|+=+..|.|+||++..--+.+....- ........+-+........+-..++++
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~-----~~~~s~~~Pl~t~~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGL-----EVKDSEFRPLFTFNGHKGEGYGLDWSP 221 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccc-----cccccccCceEEecccCccceeeeccc
Confidence 345667766655444 5567777788899999999643221111100 000000111111111112233344444
Q ss_pred cCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCc
Q 001202 141 DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM 220 (1124)
Q Consensus 141 d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~ 220 (1124)
.... .+++.|..-.++.|....+ .... ...++.+|...|.++.|||.-
T Consensus 222 ~~~g-~LlsGDc~~~I~lw~~~~g-~W~v------------------------------d~~Pf~gH~~SVEDLqWSptE 269 (440)
T KOG0302|consen 222 IKTG-RLLSGDCVKGIHLWEPSTG-SWKV------------------------------DQRPFTGHTKSVEDLQWSPTE 269 (440)
T ss_pred cccc-ccccCccccceEeeeeccC-ceee------------------------------cCccccccccchhhhccCCcc
Confidence 2222 1223344444445664432 2211 112455688899999999753
Q ss_pred ceEEEEecCCcEEEEEecCCceEeeecccccee-----cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCC--Ccee
Q 001202 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES--ASLI 292 (1124)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~-----~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~--~~~~ 292 (1124)
..++++++-|++|++||...+.+. ..|..-| .++||.+..+||+|+.||+++|||+..- ++.+
T Consensus 270 ---------~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pV 340 (440)
T KOG0302|consen 270 ---------DGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPV 340 (440)
T ss_pred ---------CceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcc
Confidence 456788889999999999876322 6788888 9999999999999999999999999752 3455
Q ss_pred EEEeeccCCCCCCCCCCeEEEEECCC-CCEEEEEECCCcEEEEEcCC
Q 001202 293 RTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSG 338 (1124)
Q Consensus 293 ~~l~~~~~g~~~~h~g~V~~lawSPD-G~~Lasgs~Dg~I~vWdv~~ 338 (1124)
.+++ - |+++|+||.|+|. ...||+++.|..|.+||+.-
T Consensus 341 A~fk----~----Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 341 ATFK----Y----HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeEE----e----ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 5665 2 9999999999994 56899999999999999854
No 149
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=1.3e-12 Score=143.96 Aligned_cols=222 Identities=13% Similarity=0.132 Sum_probs=160.8
Q ss_pred cCCcEEEEEecCCceEeeeccc-----cce-------------------ecCCCCeE-EEEEccCC-CEEEEEecCCeEE
Q 001202 228 SNGQLMSCSVSKKGLKLAEFIK-----IDK-------------------ELGSGDAV-CASIAPEQ-QILAVGTRRGVVE 281 (1124)
Q Consensus 228 ~dG~~~~~~~~d~~i~~wd~~~-----~~~-------------------~~gh~~~v-~va~spdg-~lLAsGs~DgtV~ 281 (1124)
.-|++++.|.-+..|.+||..- +.. -.+|+++| .++||... ..||+||.|.||+
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 3477888888888999998641 100 03799999 99999875 4799999999999
Q ss_pred EEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCC-CCEEEEEECCCcEEEEEcCCCe---eeEEeccCCcCceeeeE
Q 001202 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPI 357 (1124)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPD-G~~Lasgs~Dg~I~vWdv~~~~---l~~tl~~h~~~~V~s~~ 357 (1124)
+||+++ +++..++. . |.+.|.+++|.|. +.+|.+|+.|++|++.|..... ....+ .+.|-.++
T Consensus 270 lWD~~~-g~p~~s~~----~----~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~----~g~VEkv~ 336 (463)
T KOG0270|consen 270 LWDVDT-GKPKSSIT----H----HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF----DGEVEKVA 336 (463)
T ss_pred EEEcCC-CCcceehh----h----cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe----ccceEEEE
Confidence 999998 88887776 2 8899999999984 7799999999999999997321 12222 45688888
Q ss_pred EcCCCCCCcceEEEe---eeEEEEeCCCC-eEEEEecCCcceEEEEec----cceEEeeccCCceeeeEeeecCCeEEEe
Q 001202 358 VKPNQDCKYEPLMSG---TSMMQWDEYGY-RLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVV 429 (1124)
Q Consensus 358 ~sp~~~~~~~~l~sg---~~i~~W~~~~~-~l~~~~~~~~~~v~~~s~----~k~~~s~s~d~~v~~w~l~~~~~~l~l~ 429 (1124)
|.|... ..+..+ ++++-+|.+.. +++.+...|++.|-.+++ -..++|++.|+++++|++...+.+....
T Consensus 337 w~~~se---~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 337 WDPHSE---NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred ecCCCc---eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc
Confidence 888762 233333 37777887754 788888899999955544 3467899999999999976554421100
Q ss_pred ecCCCccceeeecccceeeccCCCceEEEEEccCC-CEEEEEcCCCeE-EEEcCCC
Q 001202 430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 430 ~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG-~~lAvag~dG~v-lwd~~sg 483 (1124)
+ .+. -+...|.++.|+- -.+|.||..+.+ +||+.+.
T Consensus 414 ~----------------~~~--~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 414 H----------------SFK--LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred c----------------ccc--ccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 0 000 0124566677764 467889999977 9998764
No 150
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=8.2e-12 Score=131.84 Aligned_cols=269 Identities=15% Similarity=0.203 Sum_probs=153.0
Q ss_pred eEEEEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEec--CCcEEEEEeCCCeEEEEEeeec
Q 001202 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP--DTKLIAVVTSSLYLHIFKVQIT 99 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSP--Dg~~Lav~t~dg~l~i~~v~~~ 99 (1124)
..|.|.+-|+..|+++ |.++.||+.+++. +...++..-=.+.|.+..|.|.| =|+.+|+++.|+++.||.=+..
T Consensus 17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~~s---~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~ 93 (361)
T KOG2445|consen 17 HDVSFDFYGRRMATCSSDQTVKIWDSTSDS---GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEK 93 (361)
T ss_pred eeeeecccCceeeeccCCCcEEEEeccCCC---CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccc
Confidence 3477889999999976 5689999964332 22222222112468889999977 5899999999999999975421
Q ss_pred CceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEe--ec--CCeEEEEecCCcEEEEeccCcccc-ceeeccCCC
Q 001202 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SD--NKHMLLGLSDGSLYSISWKGEFYG-AFELVHSSN 174 (1124)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~d--~~~llv~t~dg~v~~~~Wd~~~~~-~~~l~~~~~ 174 (1124)
.. ..+. ..|.... .+......|+.+. +. |-.|++++.||.++++.-..-.+. ..++. +
T Consensus 94 ~~----~~~~--------~~Wv~~t--tl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq---~ 156 (361)
T KOG2445|consen 94 SE----EAHG--------RRWVRRT--TLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ---H 156 (361)
T ss_pred cc----cccc--------ceeEEEE--EeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh---h
Confidence 10 0000 1121111 1222233444433 32 234566678999998743221111 11100 0
Q ss_pred CccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCc--ceEEEEecCCcEEEEEecCCceEeeeccccc-
Q 001202 175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM--RLLFVLYSNGQLMSCSVSKKGLKLAEFIKID- 251 (1124)
Q Consensus 175 ~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~--~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~- 251 (1124)
.+.-++. +...+...-.++.|++.. ...+++..|.. ...-+.+.+|......
T Consensus 157 ---Ei~~~~~------------------pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~----a~~~~~~~Iye~~e~~r 211 (361)
T KOG2445|consen 157 ---EIQNVID------------------PPGKNKQPCFCVSWNPSRMHEPLIAVGSDED----APHLNKVKIYEYNENGR 211 (361)
T ss_pred ---hhhhccC------------------CcccccCcceEEeeccccccCceEEEEcccC----CccccceEEEEecCCcc
Confidence 0000000 112233444556666432 12333333330 0011233344332211
Q ss_pred e------ecCCCCeE-EEEEccC----CCEEEEEecCCeEEEEEcCCC-----------CceeEEEeeccCCCCCCCCCC
Q 001202 252 K------ELGSGDAV-CASIAPE----QQILAVGTRRGVVELYDLAES-----------ASLIRTVSLYDWGYSMDDTGP 309 (1124)
Q Consensus 252 ~------~~gh~~~v-~va~spd----g~lLAsGs~DgtV~vwd~~~~-----------~~~~~~l~~~~~g~~~~h~g~ 309 (1124)
+ +.+|+++| .++|.|. +.+||+|+.|| |+||++... ......+.+...+.-.+|.+.
T Consensus 212 Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~ 290 (361)
T KOG2445|consen 212 KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE 290 (361)
T ss_pred eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc
Confidence 2 26899999 9999996 56899999999 999998731 111111111111111259999
Q ss_pred eEEEEECCCCCEEEEEECCCcEEEEEcC
Q 001202 310 VSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (1124)
Q Consensus 310 V~~lawSPDG~~Lasgs~Dg~I~vWdv~ 337 (1124)
|..++|.-.|..|+|.+.||.||+|...
T Consensus 291 VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 291 VWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999999999999999999999999763
No 151
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.45 E-value=1.6e-09 Score=125.83 Aligned_cols=351 Identities=22% Similarity=0.302 Sum_probs=219.9
Q ss_pred EEEEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEE-ecCCc-EEEEEeC-CCeEEEEEeee-
Q 001202 24 IIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVW-SPDTK-LIAVVTS-SLYLHIFKVQI- 98 (1124)
Q Consensus 24 iv~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~w-SPDg~-~Lav~t~-dg~l~i~~v~~- 98 (1124)
.+.|++++..++..+ ++.+.+|+...+...+..+..... ..+..+.+ +|++. .++..+. ++.+.+|++..
T Consensus 70 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 144 (466)
T COG2319 70 SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP 144 (466)
T ss_pred EEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----CceeeEEEECCCcceEEeccCCCCccEEEEEecCC
Confidence 367888898888776 778999999733213333322111 24455555 89998 5555455 89999999875
Q ss_pred cCceeecCCCCCCCcceeeEEEEeeeeeecccccceE--EEEeecCCeEEEEec-CCcEEEEeccCccccceeeccCCCC
Q 001202 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSND 175 (1124)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~d~~~llv~t~-dg~v~~~~Wd~~~~~~~~l~~~~~~ 175 (1124)
...... +..+...+ .++.+++..++.+.. ++.+.. |+........
T Consensus 145 ~~~~~~-----------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------- 192 (466)
T COG2319 145 GKLIRT-----------------------LEGHSESVTSLAFSPDGKLLASGSSLDGTIKL--WDLRTGKPLS------- 192 (466)
T ss_pred CeEEEE-----------------------EecCcccEEEEEECCCCCEEEecCCCCCceEE--EEcCCCceEE-------
Confidence 111110 11111222 344555665666664 888877 5443211110
Q ss_pred ccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCc-EEEEEecCCceEeeeccccce--
Q 001202 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDK-- 252 (1124)
Q Consensus 176 ~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~-~~~~~~~d~~i~~wd~~~~~~-- 252 (1124)
....+...|..++++ ++|+ +++++..|+++.+|+...+..
T Consensus 193 ---------------------------~~~~~~~~v~~~~~~----------~~~~~~~~~~~~d~~i~~wd~~~~~~~~ 235 (466)
T COG2319 193 ---------------------------TLAGHTDPVSSLAFS----------PDGGLLIASGSSDGTIRLWDLSTGKLLR 235 (466)
T ss_pred ---------------------------eeccCCCceEEEEEc----------CCcceEEEEecCCCcEEEEECCCCcEEe
Confidence 122355667666666 5565 344447788888887654332
Q ss_pred --ecCCCCeEEE-EEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCC
Q 001202 253 --ELGSGDAVCA-SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (1124)
Q Consensus 253 --~~gh~~~v~v-a~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg 329 (1124)
..+|.+.. + .|+|++..+++++.|+.+++|++.........+ .+ |...|.++.|+|++..+++++.|+
T Consensus 236 ~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~----~~~~v~~~~~~~~~~~~~~~~~d~ 306 (466)
T COG2319 236 STLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL----SG----HSSSVLSVAFSPDGKLLASGSSDG 306 (466)
T ss_pred eecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE----ec----CCccEEEEEECCCCCEEEEeeCCC
Confidence 35666664 4 799999999999999999999998633323333 24 889999999999999999999998
Q ss_pred cEEEEEcCCCeeeEEec--cCCcCceeeeEEcCCCCCCcceEEEe----eeEEEEeCCCCeEEEEecCCcc-eEEEEecc
Q 001202 330 GLTVWSVSGCRLMSTIR--QISLSSISSPIVKPNQDCKYEPLMSG----TSMMQWDEYGYRLYAIEEGSSE-RVLIFSFG 402 (1124)
Q Consensus 330 ~I~vWdv~~~~l~~tl~--~h~~~~V~s~~~sp~~~~~~~~l~sg----~~i~~W~~~~~~l~~~~~~~~~-~v~~~s~~ 402 (1124)
.+++|+..+........ .| ...+..+.+ +.. ...+..+ ..+..|+............... ....+...
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (466)
T COG2319 307 TVRLWDLETGKLLSSLTLKGH-EGPVSSLSF-SPD---GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPD 381 (466)
T ss_pred cEEEEEcCCCceEEEeeeccc-CCceEEEEE-CCC---CCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECCC
Confidence 89999998887766665 55 446888888 421 1223322 2555688877662222222221 11222221
Q ss_pred ceEE-eeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEc
Q 001202 403 KCCL-NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 403 k~~~-s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~ 480 (1124)
.... .+..++.+.+|+....... .....+...+....+++++.+++.++.++.+ .|+.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 382 GRVVSSGSTDGTVRLWDLSTGSLL--------------------RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441 (466)
T ss_pred CCEEEEecCCCceEEEecccCeee--------------------eeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEec
Confidence 1122 2567778888886554431 1111111678999999999999999999999 9998
Q ss_pred CC
Q 001202 481 RQ 482 (1124)
Q Consensus 481 ~s 482 (1124)
.+
T Consensus 442 ~~ 443 (466)
T COG2319 442 KT 443 (466)
T ss_pred cC
Confidence 77
No 152
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.44 E-value=2.8e-12 Score=145.91 Aligned_cols=233 Identities=16% Similarity=0.175 Sum_probs=154.6
Q ss_pred ccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccc-cceecCCCCeE-EEEEccCCCEEEEEecCCeE
Q 001202 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK-IDKELGSGDAV-CASIAPEQQILAVGTRRGVV 280 (1124)
Q Consensus 203 ~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~-~~~~~gh~~~v-~va~spdg~lLAsGs~DgtV 280 (1124)
++.+|+-.|.+++|+ .||+.+++|+.|+.+-+|+..- +.....|++++ |++|||-...+|+++-+ ..
T Consensus 48 tLKgHKDtVycVAys----------~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLs-dF 116 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYA----------KDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLS-DF 116 (1081)
T ss_pred ccccccceEEEEEEc----------cCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchh-hc
Confidence 355777777666665 8999999999999999997543 22235799999 99999999999998754 56
Q ss_pred EEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEec-cCCcCceeeeEEc
Q 001202 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR-QISLSSISSPIVK 359 (1124)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~-~h~~~~V~s~~~s 359 (1124)
-+|..+. .. +...+ ....|.+++|..||+++|-|-.||+|.+-+-.+..-...-+ |...++|.+++|+
T Consensus 117 glWS~~q-K~-V~K~k---------ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~ 185 (1081)
T KOG1538|consen 117 GLWSPEQ-KS-VSKHK---------SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWN 185 (1081)
T ss_pred cccChhh-hh-HHhhh---------hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEec
Confidence 7887664 21 11111 24568999999999999999999999999887654333222 3336789999999
Q ss_pred CCCCCCc-ceEEEeeeEEEEeCC------CCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEe
Q 001202 360 PNQDCKY-EPLMSGTSMMQWDEY------GYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVV 429 (1124)
Q Consensus 360 p~~~~~~-~~l~sg~~i~~W~~~------~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~ 429 (1124)
|...... +.+ .+.-|+-. +|+.+-....-.-.-.++++ |..++-|+.|+..+++. .+.+.
T Consensus 186 p~sg~G~~di~----aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT----R~Gvr-- 255 (1081)
T KOG1538|consen 186 PSSGEGRNDIL----AVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT----RDGVR-- 255 (1081)
T ss_pred CCCCCCccceE----EEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe----ecCeE--
Confidence 9863211 222 23344321 11111110000000122222 88888888888777643 11111
Q ss_pred ecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC
Q 001202 430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 430 ~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s 482 (1124)
..+.-.....|++++..|+|+++++|+.||++ .|++..
T Consensus 256 ---------------LGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 256 ---------------LGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ---------------EeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 11122233469999999999999999999999 999854
No 153
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.44 E-value=9.9e-12 Score=137.38 Aligned_cols=279 Identities=13% Similarity=0.130 Sum_probs=174.8
Q ss_pred hhcceeEEEEecCC--cEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEee---
Q 001202 66 REGENLQAVWSPDT--KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS--- 140 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg--~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--- 140 (1124)
+.|.+.+++|-|-- +++|+|...|.|=+||+.+.++. ..+...+..+.++|+++.+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d-------------------~d~v~~f~~hs~~Vs~l~F~P~ 245 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD-------------------KDGVYLFTPHSGPVSGLKFSPA 245 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc-------------------cCceEEeccCCccccceEecCC
Confidence 35788999999944 68999999999999999532210 0111122334445666544
Q ss_pred cCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCc
Q 001202 141 DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM 220 (1124)
Q Consensus 141 d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~ 220 (1124)
+...++..+.||+++..+.++..-... .+ ......-+.++.+
T Consensus 246 n~s~i~ssSyDGtiR~~D~~~~i~e~v----------------~s------------------~~~d~~~fs~~d~---- 287 (498)
T KOG4328|consen 246 NTSQIYSSSYDGTIRLQDFEGNISEEV----------------LS------------------LDTDNIWFSSLDF---- 287 (498)
T ss_pred ChhheeeeccCceeeeeeecchhhHHH----------------hh------------------cCccceeeeeccc----
Confidence 336788888999999876554321111 00 0001112222223
Q ss_pred ceEEEEecCCcEEEEEecCCceEeeeccccce----ecCCCCeE-EEEEccCCC-EEEEEecCCeEEEEEcCCCCcee-E
Q 001202 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK----ELGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAESASLI-R 293 (1124)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~----~~gh~~~v-~va~spdg~-lLAsGs~DgtV~vwd~~~~~~~~-~ 293 (1124)
+.+.+.++++.+-+...+||..+... +.-|...| .+++||... ++|+|+.|++.+|||+..-.... .
T Consensus 288 ------~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp 361 (498)
T KOG4328|consen 288 ------SAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASP 361 (498)
T ss_pred ------cCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCc
Confidence 34444455555555677888765432 35577788 999999754 69999999999999997622111 1
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcC----CCeeeEEeccCCc--Cc--eeeeEEcCCCCCC
Q 001202 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS----GCRLMSTIRQISL--SS--ISSPIVKPNQDCK 365 (1124)
Q Consensus 294 ~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~----~~~l~~tl~~h~~--~~--V~s~~~sp~~~~~ 365 (1124)
.+. ..+|+-+|.+..|||+|-.|++.+.|..|+|||.. .-.+.+++..... .. ..-.+|.|+.
T Consensus 362 ~ls------t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~--- 432 (498)
T KOG4328|consen 362 FLS------TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY--- 432 (498)
T ss_pred cee------cccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCc---
Confidence 122 12399999999999998889999999999999983 3344555543111 11 2234578865
Q ss_pred cceEEEee---eEEEEeCCCCeEEEEecCCcc----eEEEEeccce-EEeec-cCCceeee
Q 001202 366 YEPLMSGT---SMMQWDEYGYRLYAIEEGSSE----RVLIFSFGKC-CLNRG-VSGMTYAR 417 (1124)
Q Consensus 366 ~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~----~v~~~s~~k~-~~s~s-~d~~v~~w 417 (1124)
..++.|- .+-+++.+++++++...+... .+..+.+.+. +++|+ ..|.+.+|
T Consensus 433 -~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 433 -NLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred -cEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 6777665 677899999998777544222 3466777443 44443 34444444
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.44 E-value=7.3e-12 Score=138.87 Aligned_cols=212 Identities=17% Similarity=0.218 Sum_probs=158.3
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCC
Q 001202 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (1124)
Q Consensus 259 ~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~ 338 (1124)
..||+......++++|+..|+|+|||+.. ..+.+.++ + |+..|++|.+.-...+||+++..|-|.|-++.+
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~hr~lk----d----h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t 152 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRA-KLIHRFLK----D----HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT 152 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHH-HHHhhhcc----C----CcceeEEEEecCCcceeEEeccCCcEEEEeccc
Confidence 33887777779999999999999999985 44445555 4 999999999999999999999999999999999
Q ss_pred CeeeEEeccCCcCceeeeEEcCCCCCCcceEE-Eee---eEEEEeCCCCeEEEEe-cCCcceE--EEEec--cceEEeec
Q 001202 339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLM-SGT---SMMQWDEYGYRLYAIE-EGSSERV--LIFSF--GKCCLNRG 409 (1124)
Q Consensus 339 ~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~-sg~---~i~~W~~~~~~l~~~~-~~~~~~v--~~~s~--~k~~~s~s 409 (1124)
+.-..+|.......|.-+.++|.. ..++ +.+ .+-+||..+...++.. ..|.... ++|++ .+.+++.+
T Consensus 153 ~~~tt~f~~~sgqsvRll~ys~sk----r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG 228 (673)
T KOG4378|consen 153 KQKTTTFTIDSGQSVRLLRYSPSK----RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG 228 (673)
T ss_pred CccccceecCCCCeEEEeeccccc----ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec
Confidence 887777766434556688888875 4443 333 8889999987766543 3454444 78888 56788999
Q ss_pred cCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEe
Q 001202 410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (1124)
Q Consensus 410 ~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f 488 (1124)
.|..+.++|...... ...+....|..+++|+++|.+|+.|...|.+ .||++..+-.+-
T Consensus 229 ~Dkki~~yD~~s~~s---------------------~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~ 287 (673)
T KOG4378|consen 229 YDKKINIYDIRSQAS---------------------TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA 287 (673)
T ss_pred ccceEEEeecccccc---------------------cceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCce
Confidence 999999988653222 1122334588999999999999999999999 999988764332
Q ss_pred cCcCceeeeEEEEEEecC
Q 001202 489 GDITQEQKIQSKGLLWLG 506 (1124)
Q Consensus 489 ~~~~~e~~~~v~gl~W~~ 506 (1124)
-...+.. .|+.++|-.
T Consensus 288 v~sah~~--sVt~vafq~ 303 (673)
T KOG4378|consen 288 VRSAHDA--SVTRVAFQP 303 (673)
T ss_pred Eeeeccc--ceeEEEeee
Confidence 2222222 356666743
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.3e-12 Score=158.66 Aligned_cols=200 Identities=16% Similarity=0.218 Sum_probs=147.3
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee-----cCCCCeE-EEEEccC-CCEEEEEec
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPE-QQILAVGTR 276 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~-----~gh~~~v-~va~spd-g~lLAsGs~ 276 (1124)
...|.+.|..++|++.. |.++++|.+++.|.+||..+.+.- ..-.+-| |++||.+ ...||+|+.
T Consensus 112 ~~~h~G~V~gLDfN~~q---------~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~ 182 (1049)
T KOG0307|consen 112 KSKHTGPVLGLDFNPFQ---------GNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSP 182 (1049)
T ss_pred hcccCCceeeeeccccC---------CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCC
Confidence 45788999999998643 558888999999999999875431 1223456 9999987 557999999
Q ss_pred CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCC-EEEEEECCC---cEEEEEcCC-CeeeEEeccCCcC
Q 001202 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSR---GLTVWSVSG-CRLMSTIRQISLS 351 (1124)
Q Consensus 277 DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~-~Lasgs~Dg---~I~vWdv~~-~~l~~tl~~h~~~ 351 (1124)
+|.+.|||++. .+.+-.+. +.+ ....+..++|+||+. .|+++++|. .|.+||+.- .....++++| ..
T Consensus 183 sg~~~iWDlr~-~~pii~ls--~~~----~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H-~~ 254 (1049)
T KOG0307|consen 183 SGRAVIWDLRK-KKPIIKLS--DTP----GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH-QR 254 (1049)
T ss_pred CCCceeccccC-CCcccccc--cCC----CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc-cc
Confidence 99999999987 44443333 111 124488999999875 677777664 699999853 3456777777 78
Q ss_pred ceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec----cceEEeeccCCceeeeEeeecC
Q 001202 352 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGE 423 (1124)
Q Consensus 352 ~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~----~k~~~s~s~d~~v~~w~l~~~~ 423 (1124)
.|.++.|.+.++ ++++|+. .+++|++++++.+.......+.+..+++ -..++..+.||.+.++.+..+.
T Consensus 255 GilslsWc~~D~---~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 255 GILSLSWCPQDP---RLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ceeeeccCCCCc---hhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 899999998763 5566654 8999999999998887766677755555 2245677889998887765443
No 156
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.41 E-value=2.7e-12 Score=145.34 Aligned_cols=235 Identities=20% Similarity=0.323 Sum_probs=153.8
Q ss_pred ccCCCEEEE--EecCCeEEEEEcCCCCcee----EEEeeccCCCCCCCCCCeEEEEECC-CCCEEEEEECCCcEEEEEcC
Q 001202 265 APEQQILAV--GTRRGVVELYDLAESASLI----RTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVS 337 (1124)
Q Consensus 265 spdg~lLAs--Gs~DgtV~vwd~~~~~~~~----~~l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I~vWdv~ 337 (1124)
..+...+|+ .+..|.|-||+++..+++- ..+. ....|+++.|.| |...||+|++||.|++|.+.
T Consensus 588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~---------Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~ 658 (1012)
T KOG1445|consen 588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF---------NGTLVTDLHWDPFDDERLAVATDDGQINLWRLT 658 (1012)
T ss_pred eeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc---------cCceeeecccCCCChHHeeecccCceEEEEEec
Confidence 334455554 4567999999998866432 2222 345699999999 88899999999999999986
Q ss_pred CCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEec----cceEEeeccCCc
Q 001202 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGM 413 (1124)
Q Consensus 338 ~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~----~k~~~s~s~d~~ 413 (1124)
.+-+-... ..| +. ....|.+.|..+.| ...++++++|.+
T Consensus 659 a~gl~e~~------------~tP------e~-------------------~lt~h~eKI~slRfHPLAadvLa~asyd~T 701 (1012)
T KOG1445|consen 659 ANGLPENE------------MTP------EK-------------------ILTIHGEKITSLRFHPLAADVLAVASYDST 701 (1012)
T ss_pred cCCCCccc------------CCc------ce-------------------eeecccceEEEEEecchhhhHhhhhhccce
Confidence 54311000 000 11 12234555543333 556788999999
Q ss_pred eeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcC
Q 001202 414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDIT 492 (1124)
Q Consensus 414 v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~ 492 (1124)
+++||+..+.. -..+.+|.+.|..+||||||+.+|+.++||++ +|+.+++.-.+.
T Consensus 702 i~lWDl~~~~~--------------------~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~---- 757 (1012)
T KOG1445|consen 702 IELWDLANAKL--------------------YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY---- 757 (1012)
T ss_pred eeeeehhhhhh--------------------hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc----
Confidence 99999988777 35678999999999999999999999999999 999988764432
Q ss_pred ceeeeEE--E--EEEe--cCCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEeecCCccEEEEe---eCCEEEEEEcCC
Q 001202 493 QEQKIQS--K--GLLW--LGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDV---YEDYILVTYRPF 563 (1124)
Q Consensus 493 ~e~~~~v--~--gl~W--~~~~liv~~~~~~~~~~elrly~~~~ld~~~~l~~~~l~s~~l~l~~---~~~~llv~~~d~ 563 (1124)
|....+ + .+.| .+.++|+.+. +.....++.+|+.+.++-..+ .+..+...|..+-+ .+..++..+..|
T Consensus 758 -Eg~gpvgtRgARi~wacdgr~viv~Gf-dk~SeRQv~~Y~Aq~l~~~pl-~t~~lDvaps~LvP~YD~Ds~~lfltGKG 834 (1012)
T KOG1445|consen 758 -EGKGPVGTRGARILWACDGRIVIVVGF-DKSSERQVQMYDAQTLDLRPL-YTQVLDVAPSPLVPHYDYDSNVLFLTGKG 834 (1012)
T ss_pred -cCCCCccCcceeEEEEecCcEEEEecc-cccchhhhhhhhhhhccCCcc-eeeeecccCccccccccCCCceEEEecCC
Confidence 322222 2 2667 4566666555 445667899999876664433 23333332322222 112344455666
Q ss_pred eEEEEEEEE
Q 001202 564 DVHIFHVKL 572 (1124)
Q Consensus 564 ~i~l~~~~~ 572 (1124)
+-.+|-|++
T Consensus 835 D~~v~~yEv 843 (1012)
T KOG1445|consen 835 DRFVNMYEV 843 (1012)
T ss_pred CceEEEEEe
Confidence 666666664
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.40 E-value=1.5e-11 Score=136.03 Aligned_cols=276 Identities=14% Similarity=0.159 Sum_probs=167.8
Q ss_pred CCCCeE-EEEEccCC--CEEEEEecCCeEEEEEcCCCCce---eEEEeeccCCCCCCCCCCeEEEEECCCC-CEEEEEEC
Q 001202 255 GSGDAV-CASIAPEQ--QILAVGTRRGVVELYDLAESASL---IRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWK 327 (1124)
Q Consensus 255 gh~~~v-~va~spdg--~lLAsGs~DgtV~vwd~~~~~~~---~~~l~~~~~g~~~~h~g~V~~lawSPDG-~~Lasgs~ 327 (1124)
-+...+ |++|+|.. +++|+|..-|+|-+||+.+.... +..+. + |.++|.++.|+|.. ..+.+.+.
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~----~----hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT----P----HSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec----c----CCccccceEecCCChhheeeecc
Confidence 456677 99999964 68999999999999999632221 22222 3 99999999999954 58899999
Q ss_pred CCcEEEEEcCCCee--eEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeE-EEEecCCcceE--EEE
Q 001202 328 SRGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL-YAIEEGSSERV--LIF 399 (1124)
Q Consensus 328 Dg~I~vWdv~~~~l--~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l-~~~~~~~~~~v--~~~ 399 (1124)
||+|+.=|+.++.. +.++... ....+++.|+... ..+..|. ..-+|+.....- +-...-|..+| +.+
T Consensus 256 DGtiR~~D~~~~i~e~v~s~~~d-~~~fs~~d~~~e~----~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLSLDTD-NIWFSSLDFSAES----RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred CceeeeeeecchhhHHHhhcCcc-ceeeeeccccCCC----ccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 99999999987642 2222211 2234445454443 3333333 334666553221 11222355577 556
Q ss_pred ec--cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccc-eeeccCCCceEEEEEccCCCEEEEEcCCCeE
Q 001202 400 SF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (1124)
Q Consensus 400 s~--~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p-~~~~~~~~~I~~va~SpdG~~lAvag~dG~v 476 (1124)
.+ -..++|++.|++.++||+.+-..+- -| .....|.-+|.++.|||+|-.|++-+.|..|
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~-----------------sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~I 393 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKA-----------------SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEI 393 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCC-----------------CcceecccccceeeeeEEcCCCCceEeeccCCce
Confidence 66 4578999999999999987654420 02 2334788899999999999889999999999
Q ss_pred -EEEcCC-CcE-EEecCcCceee----eEEEEEEecC--CEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEeecCC---
Q 001202 477 -LYDIRQ-KKW-RVFGDITQEQK----IQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLA--- 544 (1124)
Q Consensus 477 -lwd~~s-g~w-k~f~~~~~e~~----~~v~gl~W~~--~~liv~~~~~~~~~~elrly~~~~ld~~~~l~~~~l~s--- 544 (1124)
+||... +.| ...+...|... .+...-.|.. ++++++.+. ..|.+|+-. ...+.+..-.|.
T Consensus 394 Rv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~-----r~IDv~~~~---~~q~v~el~~P~~~t 465 (498)
T KOG4328|consen 394 RVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP-----RPIDVFDGN---GGQMVCELHDPESST 465 (498)
T ss_pred EEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccC-----cceeEEcCC---CCEEeeeccCccccc
Confidence 999841 111 11111111111 1222445654 455556552 257888663 222222211111
Q ss_pred --ccEEEEeeCCEEEE-EEcCCeEEEE
Q 001202 545 --KPIVMDVYEDYILV-TYRPFDVHIF 568 (1124)
Q Consensus 545 --~~l~l~~~~~~llv-~~~d~~i~l~ 568 (1124)
.+..+.+.++.++. ....|.|.||
T Consensus 466 I~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 466 IPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred cccceeecccccceeccCCccceEEEE
Confidence 23455677776666 4445555555
No 158
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.40 E-value=2.6e-11 Score=135.63 Aligned_cols=218 Identities=15% Similarity=0.172 Sum_probs=138.3
Q ss_pred eEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEec
Q 001202 71 LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS 150 (1124)
Q Consensus 71 ~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~ 150 (1124)
.++.|+-.-..+.++..+-.++-|++..+...+.... + ..++..- .+.....-++ ..++.++++++
T Consensus 18 c~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p---~-df~pt~~-h~~~rs~~~g---------~~~d~~~i~s~ 83 (737)
T KOG1524|consen 18 CCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLP---D-DFVPTDM-HLGGRSSGGG---------KGSDTLLICSN 83 (737)
T ss_pred EeecccccceEEEeccCceEEEeecccchhhhhhhCC---c-ccCCccc-cccccccCCC---------CCcceEEEEcC
Confidence 4678888777777766555555566654432211100 0 0011100 0111000011 12477899999
Q ss_pred CCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCC
Q 001202 151 DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNG 230 (1124)
Q Consensus 151 dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG 230 (1124)
||.+++++-.+..+.. ...|.+++.+- ..+|||
T Consensus 84 DGkf~il~k~~rVE~s-------------------------------------v~AH~~A~~~g----------RW~~dG 116 (737)
T KOG1524|consen 84 DGRFVILNKSARVERS-------------------------------------ISAHAAAISSG----------RWSPDG 116 (737)
T ss_pred CceEEEecccchhhhh-------------------------------------hhhhhhhhhhc----------ccCCCC
Confidence 9999987655443321 22344555433 344899
Q ss_pred cEEEEEecCCceEeeeccccce---ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCC
Q 001202 231 QLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (1124)
Q Consensus 231 ~~~~~~~~d~~i~~wd~~~~~~---~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h 306 (1124)
.-+++.+.|+.+++|.-. +-. +.....+| |++|.|+..-++.+ +.|.+.+=.+....+ +-..+ +|
T Consensus 117 tgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k-~i~Wk--------AH 185 (737)
T KOG1524|consen 117 AGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSK-IIRWR--------AH 185 (737)
T ss_pred ceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccc-eeEEe--------cc
Confidence 999999999999999632 211 12345678 99999998877765 456677766655222 22233 49
Q ss_pred CCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 307 ~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
.|-|.|+.|+|....+++|++|-..+|||-+|..+..+-. | .-++++++|.|+.
T Consensus 186 DGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~-~-ey~ITSva~npd~ 239 (737)
T KOG1524|consen 186 DGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAA-E-EYAITSVAFNPEK 239 (737)
T ss_pred CcEEEEeecCccccceeecCCceeEEeecccCcccccCCh-h-ccceeeeeecccc
Confidence 9999999999999999999999999999999987665432 2 4567777777763
No 159
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.39 E-value=7.5e-12 Score=142.50 Aligned_cols=261 Identities=18% Similarity=0.283 Sum_probs=180.2
Q ss_pred eE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcC
Q 001202 259 AV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (1124)
Q Consensus 259 ~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~ 337 (1124)
.+ .++|-|||+.++.+ ++..+.+||.++ |..+.+++ | |+..|.|++||.||+.+|||+.|+.|.+|+..
T Consensus 14 ci~d~afkPDGsqL~lA-Ag~rlliyD~nd-G~llqtLK----g----HKDtVycVAys~dGkrFASG~aDK~VI~W~~k 83 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-AGSRLLVYDTSD-GTLLQPLK----G----HKDTVYCVAYAKDGKRFASGSADKSVIIWTSK 83 (1081)
T ss_pred chheeEECCCCceEEEe-cCCEEEEEeCCC-cccccccc----c----ccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence 66 89999999988877 456899999998 88899998 6 99999999999999999999999999999864
Q ss_pred CCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee--eEEEEeCCCCeEEEEecCCcceEEEEec---cceEEeeccCC
Q 001202 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSG 412 (1124)
Q Consensus 338 ~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~ 412 (1124)
- -.+++-.|.+.+.++.|+|-. ..++|++ .--+|+++....... ....++...+. |..++-|-.+|
T Consensus 84 l---EG~LkYSH~D~IQCMsFNP~~----h~LasCsLsdFglWS~~qK~V~K~--kss~R~~~CsWtnDGqylalG~~nG 154 (1081)
T KOG1538|consen 84 L---EGILKYSHNDAIQCMSFNPIT----HQLASCSLSDFGLWSPEQKSVSKH--KSSSRIICCSWTNDGQYLALGMFNG 154 (1081)
T ss_pred c---cceeeeccCCeeeEeecCchH----HHhhhcchhhccccChhhhhHHhh--hhheeEEEeeecCCCcEEEEeccCc
Confidence 2 234444347889999999987 7777766 556788765432211 11334544444 77888888899
Q ss_pred ceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCC-----CEEEEEcCCCeE-EEEcCCCcEE
Q 001202 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-----MFLAVAGLHGLI-LYDIRQKKWR 486 (1124)
Q Consensus 413 ~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG-----~~lAvag~dG~v-lwd~~sg~wk 486 (1124)
|+.+.+ ..++.++.+- .--|.|.||++++|+|.. ..++++.-..+. .|.+...
T Consensus 155 TIsiRN-k~gEek~~I~-----------------Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--- 213 (1081)
T KOG1538|consen 155 TISIRN-KNGEEKVKIE-----------------RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--- 213 (1081)
T ss_pred eEEeec-CCCCcceEEe-----------------CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce---
Confidence 998875 3344433222 223678999999999864 467777777777 6665432
Q ss_pred Eec-CcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeCC--CCCC----cceEEEeecCCccEEEEeeCCEEEEE
Q 001202 487 VFG-DITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQ----SSLLCRKSLLAKPIVMDVYEDYILVT 559 (1124)
Q Consensus 487 ~f~-~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~~--~ld~----~~~l~~~~l~s~~l~l~~~~~~llv~ 559 (1124)
..+ +..-+-+-.|..-.-+|.++++|+. +..+.+|.|+ .|.. +.-+|+ +.+-+++.++.++
T Consensus 214 ~Igk~r~L~FdP~CisYf~NGEy~LiGGs-----dk~L~~fTR~GvrLGTvg~~D~WIWt-------V~~~PNsQ~v~~G 281 (1081)
T KOG1538|consen 214 QIGKDRALNFDPCCISYFTNGEYILLGGS-----DKQLSLFTRDGVRLGTVGEQDSWIWT-------VQAKPNSQYVVVG 281 (1081)
T ss_pred eecccccCCCCchhheeccCCcEEEEccC-----CCceEEEeecCeEEeeccccceeEEE-------EEEccCCceEEEE
Confidence 222 1111111124455557889998844 3478899886 2221 111222 3445667788889
Q ss_pred EcCCeEEEEEEE
Q 001202 560 YRPFDVHIFHVK 571 (1124)
Q Consensus 560 ~~d~~i~l~~~~ 571 (1124)
|-||+|.-|.+.
T Consensus 282 CqDGTiACyNl~ 293 (1081)
T KOG1538|consen 282 CQDGTIACYNLI 293 (1081)
T ss_pred EccCeeehhhhH
Confidence 999999988764
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.39 E-value=1.2e-11 Score=136.49 Aligned_cols=192 Identities=15% Similarity=0.230 Sum_probs=141.5
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCceeEEEeecc--------CC---C-CCCCCCCeEEEEECCCC-CEEEEEECCCcEEE
Q 001202 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYD--------WG---Y-SMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTV 333 (1124)
Q Consensus 267 dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~--------~g---~-~~~h~g~V~~lawSPDG-~~Lasgs~Dg~I~v 333 (1124)
.|.++|+|+.|..|.|||++-.......+.+.. .+ . ..+|+..|.+++|.-+- +.|||||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 367999999999999999875322222222210 01 1 13599999999998765 48999999999999
Q ss_pred EEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCC----CeEEEEecCCcceEEEEec--cce
Q 001202 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG----YRLYAIEEGSSERVLIFSF--GKC 404 (1124)
Q Consensus 334 Wdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~----~~l~~~~~~~~~~v~~~s~--~k~ 404 (1124)
||+.++++..++..| ...|.++.|+|... ..+++|+ ++.+.+.+. +.-|.. .+ .-..+.+.+ ...
T Consensus 271 WD~~~g~p~~s~~~~-~k~Vq~l~wh~~~p---~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-~g-~VEkv~w~~~se~~ 344 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHH-GKKVQTLEWHPYEP---SVLLSGSYDGTVALKDCRDPSNSGKEWKF-DG-EVEKVAWDPHSENS 344 (463)
T ss_pred EEcCCCCcceehhhc-CCceeEEEecCCCc---eEEEeccccceEEeeeccCccccCceEEe-cc-ceEEEEecCCCcee
Confidence 999999999999866 78999999999863 6778887 777777652 222222 12 112244545 445
Q ss_pred EEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCC-CEEEEEcCCCeE-EEEcCC
Q 001202 405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 405 ~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG-~~lAvag~dG~v-lwd~~s 482 (1124)
++.+..||+++..|.++.+. ...+...|+.+|.++++++.- .+++++|.|+++ +|++..
T Consensus 345 f~~~tddG~v~~~D~R~~~~-------------------~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPGK-------------------PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred EEEecCCceEEeeecCCCCC-------------------ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 66778899999999877655 235777999999999998754 578899999999 999864
Q ss_pred C
Q 001202 483 K 483 (1124)
Q Consensus 483 g 483 (1124)
.
T Consensus 406 ~ 406 (463)
T KOG0270|consen 406 D 406 (463)
T ss_pred C
Confidence 3
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.38 E-value=5.3e-09 Score=121.39 Aligned_cols=321 Identities=21% Similarity=0.272 Sum_probs=202.2
Q ss_pred hhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecC-ceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCe
Q 001202 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE-KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKH 144 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~ 144 (1124)
+...+..+.+.+++..++.++.++.+.+|+..... .......... ..+. ....+ .+++..
T Consensus 64 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~----------------~~~~~-~~~~~~ 124 (466)
T COG2319 64 HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD--SSVS----------------KLALS-SPDGNS 124 (466)
T ss_pred ccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC--Ccee----------------eEEEE-CCCcce
Confidence 34567789999999999999999999999987653 1100100000 0000 00111 334443
Q ss_pred EEEE-ec-CCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcce
Q 001202 145 MLLG-LS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (1124)
Q Consensus 145 llv~-t~-dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~ 222 (1124)
++.. +. ++.+..+..... .... .....+...|..+.+
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~-~~~~----------------------------------~~~~~~~~~v~~~~~------ 163 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTP-GKLI----------------------------------RTLEGHSESVTSLAF------ 163 (466)
T ss_pred EEeccCCCCccEEEEEecCC-CeEE----------------------------------EEEecCcccEEEEEE------
Confidence 3333 33 677766443320 1000 012344455554444
Q ss_pred EEEEecCCcEEEEEec-CCceEeeeccccce---ecCCCCeE-EEEEccCCC-EEEEEecCCeEEEEEcCCCCceeE-EE
Q 001202 223 LFVLYSNGQLMSCSVS-KKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIR-TV 295 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~-d~~i~~wd~~~~~~---~~gh~~~v-~va~spdg~-lLAsGs~DgtV~vwd~~~~~~~~~-~l 295 (1124)
+++|+.++.+.. ++.+++|+...... ..+|...+ +++++|++. .+++++.|++|++|+... +.... .+
T Consensus 164 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~-~~~~~~~~ 238 (466)
T COG2319 164 ----SPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST-GKLLRSTL 238 (466)
T ss_pred ----CCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC-CcEEeeec
Confidence 477777777664 89999999876332 25688888 999999998 666669999999998774 55554 34
Q ss_pred eeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCee-eEEeccCCcCceeeeEEcCCCCCCcceEEEee-
Q 001202 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL-MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT- 373 (1124)
Q Consensus 296 ~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l-~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~- 373 (1124)
. + |...+ ...|+|++..+++++.|+.+++|+...... ...+.+| ...+.++.+.|++ ..+.++.
T Consensus 239 ~----~----~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~~~~~~~ 304 (466)
T COG2319 239 S----G----HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH-SSSVLSVAFSPDG----KLLASGSS 304 (466)
T ss_pred C----C----CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC-CccEEEEEECCCC----CEEEEeeC
Confidence 3 3 76665 448999999999999999999999986553 4455455 7789999999965 5555544
Q ss_pred --eEEEEeCCCCeEEEEec--CCcceEEEEec--c-ceEEee-ccCCceeeeEeeecCCeEEEeecCCCccceeeecccc
Q 001202 374 --SMMQWDEYGYRLYAIEE--GSSERVLIFSF--G-KCCLNR-GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (1124)
Q Consensus 374 --~i~~W~~~~~~l~~~~~--~~~~~v~~~s~--~-k~~~s~-s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p 445 (1124)
.+..|+..+........ .|...+..+.+ . ..+..+ ..|+.+..|+...... .
T Consensus 305 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------~ 364 (466)
T COG2319 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP--------------------L 364 (466)
T ss_pred CCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCce--------------------e
Confidence 57899888877666554 55554533333 1 233333 5666676666544331 0
Q ss_pred eeeccCCCceEEEEEccCCCEEEE-EcCCCeE-EEEcCCCcEEE
Q 001202 446 VSYISQNWPVQHVAASKDGMFLAV-AGLHGLI-LYDIRQKKWRV 487 (1124)
Q Consensus 446 ~~~~~~~~~I~~va~SpdG~~lAv-ag~dG~v-lwd~~sg~wk~ 487 (1124)
...... ..+..+.+++ ...+.. ++.++.+ +|+........
T Consensus 365 ~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (466)
T COG2319 365 KTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLR 406 (466)
T ss_pred EEecCC-ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeee
Confidence 111111 1177888888 533333 6888888 99998876443
No 162
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=2.5e-11 Score=137.71 Aligned_cols=204 Identities=17% Similarity=0.177 Sum_probs=131.9
Q ss_pred CCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce---ecCCCCeE-EEEEccCCCEEEEEecCCeE
Q 001202 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVV 280 (1124)
Q Consensus 205 ~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~---~~gh~~~v-~va~spdg~lLAsGs~DgtV 280 (1124)
..+...|++++|+..+.+++.+.++|.. ..+-+.+...... +.-..+.+ ++.|+|...++.++++ ..|
T Consensus 518 I~~~k~i~~vtWHrkGDYlatV~~~~~~-------~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~v 589 (733)
T KOG0650|consen 518 IKHPKSIRQVTWHRKGDYLATVMPDSGN-------KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSV 589 (733)
T ss_pred EecCCccceeeeecCCceEEEeccCCCc-------ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cce
Confidence 4567788888888777777777665521 1122233322211 11123345 9999999988888875 489
Q ss_pred EEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCC-CeeeEEeccCCcCceeeeEEc
Q 001202 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSSISSPIVK 359 (1124)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~-~~l~~tl~~h~~~~V~s~~~s 359 (1124)
++||+.. ..+++++. . -...|.+++.+|.|..|+.|+.|+.+..+|+.- .+...+++.| ...+++++|+
T Consensus 590 RiYdL~k-qelvKkL~----t----g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H-~~avr~Va~H 659 (733)
T KOG0650|consen 590 RIYDLSK-QELVKKLL----T----GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH-EKAVRSVAFH 659 (733)
T ss_pred EEEehhH-HHHHHHHh----c----CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh-hhhhhhhhhc
Confidence 9999987 65555443 1 245589999999999999999999999999954 4567777777 7788999888
Q ss_pred CCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCcccee
Q 001202 360 PNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (1124)
Q Consensus 360 p~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w 439 (1124)
+.- ..+++|+ .|+++.++.-.--.+ +.-
T Consensus 660 ~ry----PLfas~s------------------------------------dDgtv~Vfhg~VY~D------------l~q 687 (733)
T KOG0650|consen 660 KRY----PLFASGS------------------------------------DDGTVIVFHGMVYND------------LLQ 687 (733)
T ss_pred ccc----ceeeeec------------------------------------CCCcEEEEeeeeehh------------hhc
Confidence 764 4444433 333333221100000 000
Q ss_pred eecccc-eeeccCCC----ceEEEEEccCCCEEEEEcCCCeE-EE
Q 001202 440 LHLNLP-VSYISQNW----PVQHVAASKDGMFLAVAGLHGLI-LY 478 (1124)
Q Consensus 440 ~~~~~p-~~~~~~~~----~I~~va~SpdG~~lAvag~dG~v-lw 478 (1124)
..+-+| ..+.+|.- -|..+.|+|.-.+|.+||.||++ +|
T Consensus 688 npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 001112 22334433 38888999999999999999999 87
No 163
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=9.6e-10 Score=130.96 Aligned_cols=295 Identities=14% Similarity=0.172 Sum_probs=164.4
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEE
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~ 332 (1124)
..|.-.. |+++||.++++|+|..||.|.+|.--.......+.....| |...|.+++||+||.+|.||+..|-+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW-----H~~~V~~L~fS~~G~~LlSGG~E~VLv 276 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW-----HHDEVNSLSFSSDGAYLLSGGREGVLV 276 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe-----cccccceeEEecCCceEeecccceEEE
Confidence 3466656 9999999999999999999999974320111122233334 788899999999999999999999999
Q ss_pred EEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee-eEEEEeCCCCeEEEEecC----------Ccc---eEEE
Q 001202 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEG----------SSE---RVLI 398 (1124)
Q Consensus 333 vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~-~i~~W~~~~~~l~~~~~~----------~~~---~v~~ 398 (1124)
+|.+.++. ..-|..- .+.+..+.++|+++. -.+..+. ++.+-...+-.+..+..| ... ..+.
T Consensus 277 ~Wq~~T~~-kqfLPRL-gs~I~~i~vS~ds~~--~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~ 352 (792)
T KOG1963|consen 277 LWQLETGK-KQFLPRL-GSPILHIVVSPDSDL--YSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVS 352 (792)
T ss_pred EEeecCCC-ccccccc-CCeeEEEEEcCCCCe--EEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEE
Confidence 99998876 3333333 468999999998731 0111111 222222211111111111 011 1256
Q ss_pred Eec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcC-----
Q 001202 399 FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL----- 472 (1124)
Q Consensus 399 ~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~----- 472 (1124)
+++ .+.++-.+..+.+..+++..... ++-++-.+. ........+.-+|+.++.+.+|.++|++-.
T Consensus 353 idpr~~~~vln~~~g~vQ~ydl~td~~-i~~~~v~~~--------n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~ 423 (792)
T KOG1963|consen 353 IDPRTNSLVLNGHPGHVQFYDLYTDST-IYKLQVCDE--------NYSDGDVNIQVGITAVARSRFGSWMATLEARIDKF 423 (792)
T ss_pred EcCCCCceeecCCCceEEEEeccccce-eeeEEEEee--------cccCCcceeEEeeeeehhhccceEEEEeeeeehhh
Confidence 666 55666667777888888655433 211110000 000111123346888899999999998742
Q ss_pred ---CCeE---EEEc--CCCcEEEec--CcCceeeeEEEEEEe--cCCEEEEEEEecCCCeEEEEEeeCC---CCCCcceE
Q 001202 473 ---HGLI---LYDI--RQKKWRVFG--DITQEQKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPRY---HLDQSSLL 537 (1124)
Q Consensus 473 ---dG~v---lwd~--~sg~wk~f~--~~~~e~~~~v~gl~W--~~~~liv~~~~~~~~~~elrly~~~---~ld~~~~l 537 (1124)
||.+ .|-. ++..|.+-. +..|+..+.+..+.- ..+..+.+ +.+..+++|... +.......
T Consensus 424 ~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta-----~~dg~~KiW~~~~~~n~~k~~s~ 498 (792)
T KOG1963|consen 424 NFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTA-----SVDGDFKIWVFTDDSNIYKKSSN 498 (792)
T ss_pred hccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEe-----ccCCeEEEEEEecccccCcCccc
Confidence 4443 5543 344565433 233444333332221 12233333 223367777762 22222222
Q ss_pred EEe-------ecCCccEEEEeeCCEEEEEEcCCeEEEEEEEE
Q 001202 538 CRK-------SLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL 572 (1124)
Q Consensus 538 ~~~-------~l~s~~l~l~~~~~~llv~~~d~~i~l~~~~~ 572 (1124)
|.. ..|......+-+ +.++....+..|.+|++.-
T Consensus 499 W~c~~i~sy~k~~i~a~~fs~d-Gslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 499 WTCKAIGSYHKTPITALCFSQD-GSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred eEEeeeeccccCcccchhhcCC-CcEEEEecCCEEEEecCCC
Confidence 221 122222233333 3666667789999999864
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.38 E-value=1.8e-11 Score=130.27 Aligned_cols=204 Identities=14% Similarity=0.194 Sum_probs=147.5
Q ss_pred CCCCeE-EEEEccC----CCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCC-CEEEEEECC
Q 001202 255 GSGDAV-CASIAPE----QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKS 328 (1124)
Q Consensus 255 gh~~~v-~va~spd----g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG-~~Lasgs~D 328 (1124)
+|.... .++|+-| ..++|.|+.-|.|+|.|+.+ +++...+. | |.+.|+.+.+.|+. +++.+||.|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~-~~~~~~~~----g----hG~sINeik~~p~~~qlvls~SkD 157 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-GQCSKNYR----G----HGGSINEIKFHPDRPQLVLSASKD 157 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch-hhhcccee----c----cCccchhhhcCCCCCcEEEEecCC
Confidence 455555 7777654 45899999999999999987 66666665 5 99999999999975 689999999
Q ss_pred CcEEEEEcCCCeeeEEecc--CCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEE----------------
Q 001202 329 RGLTVWSVSGCRLMSTIRQ--ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYA---------------- 387 (1124)
Q Consensus 329 g~I~vWdv~~~~l~~tl~~--h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~---------------- 387 (1124)
.+||+|++.+..+++.+.| .|...|-++.|++++ ..++|++ ++++|.....+..-
T Consensus 158 ~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g----d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~p 233 (385)
T KOG1034|consen 158 HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG----DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRP 233 (385)
T ss_pred ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC----CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCc
Confidence 9999999999999999976 347899999999999 8889877 99999987432211
Q ss_pred ------------EecCCcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccc-------ee
Q 001202 388 ------------IEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-------VS 447 (1124)
Q Consensus 388 ------------~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p-------~~ 447 (1124)
+..-|...|-++.+ |..++|-|-++.+..|...+-++. |+.++.| ..
T Consensus 234 fpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~-------------~~~vkp~es~~Ti~~~ 300 (385)
T KOG1034|consen 234 FPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEES-------------IHNVKPPESATTILGE 300 (385)
T ss_pred CCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhh-------------hhccCCCccceeeeeE
Confidence 11112333333344 677788888888888875322221 1111111 12
Q ss_pred eccCCCceEEE--EEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 448 YISQNWPVQHV--AASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 448 ~~~~~~~I~~v--a~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
+.-.+..|+.+ +|+|-++.||.|+..|.+ +||+....
T Consensus 301 ~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 301 FDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred eccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCC
Confidence 22233445555 557889999999999999 99997643
No 165
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.37 E-value=1.6e-11 Score=132.74 Aligned_cols=200 Identities=15% Similarity=0.214 Sum_probs=150.0
Q ss_pred cCCCCeE-EEEEccC--CCEEEEEecCCeEEEEEcCCC---------------CceeEEEeeccCCCCCCCCCCeEEEEE
Q 001202 254 LGSGDAV-CASIAPE--QQILAVGTRRGVVELYDLAES---------------ASLIRTVSLYDWGYSMDDTGPVSCIAW 315 (1124)
Q Consensus 254 ~gh~~~v-~va~spd--g~lLAsGs~DgtV~vwd~~~~---------------~~~~~~l~~~~~g~~~~h~g~V~~law 315 (1124)
.+|.+.+ .+..++- ..+.|+=+..|.|+||++... .+.+.++. +|.+.=..++|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~--------ghk~EGy~LdW 219 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN--------GHKGEGYGLDW 219 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec--------ccCccceeeec
Confidence 4566777 6666664 456777788999999998541 12233333 38888899999
Q ss_pred CCCCC-EEEEEECCCcEEEEEcCCCee---eEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCC---eE
Q 001202 316 TPDNS-AFAVGWKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY---RL 385 (1124)
Q Consensus 316 SPDG~-~Lasgs~Dg~I~vWdv~~~~l---~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~---~l 385 (1124)
||--. .|+||..-+.|.+|...++.- ...+.+| +.+|-.+.|||... ..++|++ ++++||.+.+ ..
T Consensus 220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH-~~SVEDLqWSptE~---~vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGH-TKSVEDLQWSPTED---GVFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred ccccccccccCccccceEeeeeccCceeecCcccccc-ccchhhhccCCccC---ceEEeeecCceEEEEEecCCCccce
Confidence 99433 588888889999999977642 2345566 78899999999863 5677776 9999999877 33
Q ss_pred EEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEcc
Q 001202 386 YAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK 462 (1124)
Q Consensus 386 ~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~Sp 462 (1124)
+.+ +.|...|-++++ ...+++|+.||+.++|++.+-... +....|.-|..||+++.|+|
T Consensus 296 ~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-----------------~pVA~fk~Hk~pItsieW~p 357 (440)
T KOG0302|consen 296 VST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-----------------QPVATFKYHKAPITSIEWHP 357 (440)
T ss_pred eEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-----------------CcceeEEeccCCeeEEEecc
Confidence 433 677788877777 336899999999999998765441 12467889999999999998
Q ss_pred C-CCEEEEEcCCCeE-EEEcCCC
Q 001202 463 D-GMFLAVAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 463 d-G~~lAvag~dG~v-lwd~~sg 483 (1124)
. ...+|++|.|..+ +||+...
T Consensus 358 ~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 358 HEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred ccCceEEeccCCCcEEEEEeecc
Confidence 5 4678888899999 9998653
No 166
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.37 E-value=7.3e-07 Score=114.37 Aligned_cols=357 Identities=16% Similarity=0.174 Sum_probs=179.5
Q ss_pred hhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeE
Q 001202 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~l 145 (1124)
..+.++++.+-+|...+++++.+|.|.++..+.+... . ....-+ .+ .......+++||.+.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~-------~--------~~E~VG--~v-d~GI~a~~WSPD~Ell 135 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE-------D--------EIEIVG--SV-DSGILAASWSPDEELL 135 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC-------c--------eeEEEE--EE-cCcEEEEEECCCcCEE
Confidence 3477899999999999999999999999844321100 0 000111 01 1122345677888999
Q ss_pred EEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCee----ecccCCCCceEEEEEecCCcc
Q 001202 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFV----SDHKFPISSAIIWLELCLPMR 221 (1124)
Q Consensus 146 lv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~----~~~~~~~~~~I~~i~~s~~~~ 221 (1124)
++.|++|.+..+.-+-+......+.........--.+++ ...+..+-+..+... +.+... ......+. ..+..
T Consensus 136 a~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGW-GkKeTQF~Gs~gK~aa~~~~~p~~~-~~d~~~~s-~dd~~ 212 (928)
T PF04762_consen 136 ALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGW-GKKETQFHGSAGKAAARQLRDPTVP-KVDEGKLS-WDDGR 212 (928)
T ss_pred EEEeCCCEEEEEeccceEEEEeecCccccCCCceeeecc-CcccCccCcchhhhhhhhccCCCCC-ccccCccc-cCCCc
Confidence 999999988877433222222211111110000111111 111111111000000 000000 00011122 22334
Q ss_pred eEEEEecCCcEEEEEec------CCceEeeecccccee--cCCCCeE--EEEEccCCCEEEEEec---CCeEEEEEcCCC
Q 001202 222 LLFVLYSNGQLMSCSVS------KKGLKLAEFIKIDKE--LGSGDAV--CASIAPEQQILAVGTR---RGVVELYDLAES 288 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~------d~~i~~wd~~~~~~~--~gh~~~v--~va~spdg~lLAsGs~---DgtV~vwd~~~~ 288 (1124)
..+.+-.||+++++.+- ...+++|+-. ++.. ....+.. +++|.|.|.+||+... ...|..|.-+
T Consensus 213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-- 289 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-- 289 (928)
T ss_pred eEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC--
Confidence 55666688998887763 2457788754 3211 1122233 7899999999999865 3456666643
Q ss_pred CceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCe--eeEEeccCCcCceeeeEEcCCCCCCc
Q 001202 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISLSSISSPIVKPNQDCKY 366 (1124)
Q Consensus 289 ~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~--l~~tl~~h~~~~V~s~~~sp~~~~~~ 366 (1124)
|-.-..+.+... .....|..++|++|+..||....| .|.+|...+-. +.+.+.-.....+
T Consensus 290 GLrhgeF~l~~~----~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~------------- 351 (928)
T PF04762_consen 290 GLRHGEFTLRFD----PEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESV------------- 351 (928)
T ss_pred CcEeeeEecCCC----CCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEccCCCCC-------------
Confidence 222223332211 145679999999999999998776 49999987654 2222221101111
Q ss_pred ceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEee-----ccCCceeeeEeeecCCeEEEeecCCCccceeee
Q 001202 367 EPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNR-----GVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (1124)
Q Consensus 367 ~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~-----s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~ 441 (1124)
....|+++....+.+... .+.+..+.+.-....+ ...+++- +.. +.++.+.. +....
T Consensus 352 -------~~~~Wdpe~p~~L~v~t~-~g~~~~~~~~~~v~~s~~~~~~D~g~va---VID-G~~lllTp------f~~a~ 413 (928)
T PF04762_consen 352 -------NFVKWDPEKPLRLHVLTS-NGQYEIYDFAWDVSRSPGSSPNDNGTVA---VID-GNKLLLTP------FRRAV 413 (928)
T ss_pred -------CceEECCCCCCEEEEEec-CCcEEEEEEEEEEEecCCCCccCceEEE---EEe-CCeEEEec------ccccC
Confidence 225577765443333322 1233222221111100 0111111 111 12222221 11111
Q ss_pred cccce--eeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC
Q 001202 442 LNLPV--SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 442 ~~~p~--~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s 482 (1124)
+..|. ....-..+|.+++|++++..+|+-..||.+ +|....
T Consensus 414 VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 414 VPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred CCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 22221 122345689999999999999999999988 888544
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.35 E-value=1.8e-10 Score=126.05 Aligned_cols=130 Identities=17% Similarity=0.283 Sum_probs=102.5
Q ss_pred cCCc-EEEEEecCCceEeeeccccce------------ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCC------
Q 001202 228 SNGQ-LMSCSVSKKGLKLAEFIKIDK------------ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE------ 287 (1124)
Q Consensus 228 ~dG~-~~~~~~~d~~i~~wd~~~~~~------------~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~------ 287 (1124)
.++. .+++++.|..+++|.....+. +..|..+| +|.|+|+|.++|+|+.+|+|.+|....
T Consensus 23 ~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~ 102 (434)
T KOG1009|consen 23 KNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDA 102 (434)
T ss_pred cCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccc
Confidence 4443 899999999999997664321 14699999 999999999999999999999998762
Q ss_pred CC-----ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 288 SA-----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 288 ~~-----~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
.+ +..........| |...|..++|+||+.++++|+-|..+++||+..|++.+.+.+| ...|..++|.|-+
T Consensus 103 d~e~~~~ke~w~v~k~lr~----h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh-~~yvqgvawDpl~ 177 (434)
T KOG1009|consen 103 DTEADLNKEKWVVKKVLRG----HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH-EHYVQGVAWDPLN 177 (434)
T ss_pred cchhhhCccceEEEEEecc----cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc-ccccceeecchhh
Confidence 01 111111111124 9999999999999999999999999999999999999999888 6677777776665
No 168
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.34 E-value=5.3e-11 Score=136.20 Aligned_cols=248 Identities=15% Similarity=0.115 Sum_probs=160.9
Q ss_pred ccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee-----cCCCCeE-EEEEccCC-CEEEEEe
Q 001202 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPEQ-QILAVGT 275 (1124)
Q Consensus 203 ~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~-----~gh~~~v-~va~spdg-~lLAsGs 275 (1124)
.+..|..+|.++++- |-...+++.+.|.+++.||....+.. .||...| +++|.|.. ..+++|+
T Consensus 95 ~~~aH~nAifDl~wa----------pge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGg 164 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWA----------PGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGG 164 (720)
T ss_pred ccccccceeEeeccC----------CCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeecc
Confidence 466788999988887 42345677788999999998866543 7899999 99999975 4689999
Q ss_pred cCCeEEEEEcCCCCc-e-------e----EE----EeeccCC--CCCCCCCCeEE---EEECCCCCEEEEEEC-CCcEEE
Q 001202 276 RRGVVELYDLAESAS-L-------I----RT----VSLYDWG--YSMDDTGPVSC---IAWTPDNSAFAVGWK-SRGLTV 333 (1124)
Q Consensus 276 ~DgtV~vwd~~~~~~-~-------~----~~----l~~~~~g--~~~~h~g~V~~---lawSPDG~~Lasgs~-Dg~I~v 333 (1124)
.||.|.|||+.-.+. . + .+ .+....+ ...+|.+.+.+ +-+..|...||+++. |++|+|
T Consensus 165 RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKV 244 (720)
T KOG0321|consen 165 RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKV 244 (720)
T ss_pred CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEE
Confidence 999999999864220 0 0 00 0000000 01234555555 666789999999998 999999
Q ss_pred EEcCCCeeeEEec------c--CC--cCceeeeEEcCCCCCCcceEEEee--eEEEEeCCCCeE--EEEecCCcc---eE
Q 001202 334 WSVSGCRLMSTIR------Q--IS--LSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRL--YAIEEGSSE---RV 396 (1124)
Q Consensus 334 Wdv~~~~l~~tl~------~--h~--~~~V~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l--~~~~~~~~~---~v 396 (1124)
||+.......... - |. .-.+.++.....| ...++++. ++.+|+..+... .....++.. .+
T Consensus 245 WDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG---t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~v 321 (720)
T KOG0321|consen 245 WDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG---TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYV 321 (720)
T ss_pred EeecccccccccCCCcccCccCcccceeeeEEEEecCCC---CeEEEEecCCcEEEEeccccCcCchhhccCcccceeee
Confidence 9997644322111 1 10 0123333333333 12344443 788888765432 222222211 12
Q ss_pred -EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEcc--CCCEEEEEcC
Q 001202 397 -LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK--DGMFLAVAGL 472 (1124)
Q Consensus 397 -~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~Sp--dG~~lAvag~ 472 (1124)
-.+++ +.++++|+.|....+|.+..-+. -|..+.+|.-.|.+++|.| .+. +|++++
T Consensus 322 ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~-------------------~~~~l~Ght~eVt~V~w~pS~~t~-v~TcSd 381 (720)
T KOG0321|consen 322 KSELSPDDCSLLSGSSDEQAYIWVVSSPEA-------------------PPALLLGHTREVTTVRWLPSATTP-VATCSD 381 (720)
T ss_pred eeecCCCCceEeccCCCcceeeeeecCccC-------------------ChhhhhCcceEEEEEeeccccCCC-ceeecc
Confidence 33455 77889999999999998776555 2567889999999999965 444 556689
Q ss_pred CCeE-EEEcCCC
Q 001202 473 HGLI-LYDIRQK 483 (1124)
Q Consensus 473 dG~v-lwd~~sg 483 (1124)
|-.+ +|++..+
T Consensus 382 D~~~kiW~l~~~ 393 (720)
T KOG0321|consen 382 DFRVKIWRLSNG 393 (720)
T ss_pred CcceEEEeccCc
Confidence 9888 9998554
No 169
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=3.4e-10 Score=115.98 Aligned_cols=258 Identities=12% Similarity=0.107 Sum_probs=159.6
Q ss_pred hcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEE
Q 001202 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (1124)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~ll 146 (1124)
+..+.+-+|||-+++++++...|.|-++.+..-...- ..+.+ ....++..++++++..+++..+.++
T Consensus 10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~s----a~~~g---------k~~iv~eqahdgpiy~~~f~d~~Ll 76 (325)
T KOG0649|consen 10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGS----AEPPG---------KLKIVPEQAHDGPIYYLAFHDDFLL 76 (325)
T ss_pred HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccc----cCCCC---------CcceeeccccCCCeeeeeeehhhee
Confidence 4445677899999999999999999999986432110 00100 0111344678889999888766655
Q ss_pred EEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEE
Q 001202 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (1124)
Q Consensus 147 v~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~ 226 (1124)
+| .||.|+-|.|..+....-. ++ ..-..+|.-.+ .-.-..|+.| .+
T Consensus 77 s~-gdG~V~gw~W~E~~es~~~---K~---lwe~~~P~~~~-----------------~~evPeINam----------~l 122 (325)
T KOG0649|consen 77 SG-GDGLVYGWEWNEEEESLAT---KR---LWEVKIPMQVD-----------------AVEVPEINAM----------WL 122 (325)
T ss_pred ec-cCceEEEeeehhhhhhccc---hh---hhhhcCccccC-----------------cccCCcccee----------Ee
Confidence 55 5699999999976442110 00 00001111000 0011223333 33
Q ss_pred ecCCcEEEEEecCCceEeeeccccce---ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCC-
Q 001202 227 YSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG- 301 (1124)
Q Consensus 227 s~dG~~~~~~~~d~~i~~wd~~~~~~---~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g- 301 (1124)
.|...-++++..|+.+-.||..+++. ..||+|.+ |++--.....|.+|++||+|||||..+ ++++..+...+..
T Consensus 123 dP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~ 201 (325)
T KOG0649|consen 123 DPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPN 201 (325)
T ss_pred ccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEeccccChh
Confidence 34333344455788888899888754 38999999 888756666789999999999999998 8887777633211
Q ss_pred CCCCCCC-CeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee--eEEEE
Q 001202 302 YSMDDTG-PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQW 378 (1124)
Q Consensus 302 ~~~~h~g-~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~--~i~~W 378 (1124)
..+.|-| .|-+++-+ ...|+.|+. ..+.+|++....+.+++.- ...|..+.|..+ ..++.|- .+..|
T Consensus 202 ~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse~t~vfpi--pa~v~~v~F~~d-----~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 202 LLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSESTCVFPI--PARVHLVDFVDD-----CVLIGGEGNHVQSY 271 (325)
T ss_pred hcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCCceEEEec--ccceeEeeeecc-----eEEEeccccceeee
Confidence 1122433 36666654 446666654 5899999998888887764 235666766543 2333331 56667
Q ss_pred eCCC
Q 001202 379 DEYG 382 (1124)
Q Consensus 379 ~~~~ 382 (1124)
...|
T Consensus 272 ~l~G 275 (325)
T KOG0649|consen 272 TLNG 275 (325)
T ss_pred eecc
Confidence 6643
No 170
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=1.6e-09 Score=129.04 Aligned_cols=357 Identities=18% Similarity=0.175 Sum_probs=218.7
Q ss_pred eEEEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeee-cCc
Q 001202 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI-TEK 101 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~-~~~ 101 (1124)
.++.+++.|.+.+++....+.+|+..++.-..+.+. ..+.+.-..++.++||.++++|++-.+|.|++|.=-. +..
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~---~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~ 240 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRD---ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD 240 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccceeeccch---hhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccc
Confidence 446679999999999999999999974432222222 2232223357899999999999999999999997432 111
Q ss_pred eeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCcccccc
Q 001202 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (1124)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~ 181 (1124)
. .....+-|... .....+++++|.+++.|+..|.+.+ |..+++...
T Consensus 241 ~----------~t~t~lHWH~~--------~V~~L~fS~~G~~LlSGG~E~VLv~--Wq~~T~~kq-------------- 286 (792)
T KOG1963|consen 241 S----------ETCTLLHWHHD--------EVNSLSFSSDGAYLLSGGREGVLVL--WQLETGKKQ-------------- 286 (792)
T ss_pred c----------ccceEEEeccc--------ccceeEEecCCceEeecccceEEEE--EeecCCCcc--------------
Confidence 1 11123334322 2234567789999999999998876 554444321
Q ss_pred ccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEee-ecccc---ceecCCC
Q 001202 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLA-EFIKI---DKELGSG 257 (1124)
Q Consensus 182 i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~w-d~~~~---~~~~gh~ 257 (1124)
.+..-++.|.++.+||+...++.+..|.++.+....|..++.- ++..+ +...+..
T Consensus 287 ---------------------fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~ 345 (792)
T KOG1963|consen 287 ---------------------FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQ 345 (792)
T ss_pred ---------------------cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccc
Confidence 1223467899999999888888888898888877766554421 11111 1111223
Q ss_pred CeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCC---CCCCCeEEEEECCCCCEEEEEECCCcEEE
Q 001202 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM---DDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (1124)
Q Consensus 258 ~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~---~h~g~V~~lawSPDG~~Lasgs~Dg~I~v 333 (1124)
+-+ .++++|.-+.++..+..|.|++||+-+ .+.+..+...+..+.. .+.-+++.++.+-.|.+++|+-.
T Consensus 346 ~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t-d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~------ 418 (792)
T KOG1963|consen 346 SLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT-DSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEA------ 418 (792)
T ss_pred ccceeEEEcCCCCceeecCCCceEEEEeccc-cceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeee------
Confidence 444 789999888888889999999999987 4445555433222211 23345677777777888877532
Q ss_pred EEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCC----CeEEE-EecCCcceEE--EE-ec--cc
Q 001202 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYG----YRLYA-IEEGSSERVL--IF-SF--GK 403 (1124)
Q Consensus 334 Wdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~----~~l~~-~~~~~~~~v~--~~-s~--~k 403 (1124)
|.-. ..+ .++ -...++|.-.. ..|.. +...|...+. ++ .+ ..
T Consensus 419 ~~d~--------~~~-----------~~~---------e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~ 470 (792)
T KOG1963|consen 419 RIDK--------FNF-----------FDG---------EVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSV 470 (792)
T ss_pred eehh--------hhc-----------cCc---------eEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccc
Confidence 2000 000 000 02445554332 12221 2234544442 22 22 22
Q ss_pred eEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC
Q 001202 404 CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 404 ~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s 482 (1124)
.++|++.||.+++|.+...++- + ..+..|....+ ..| |+-|+...+||.||..||+|- ++++ +||..+
T Consensus 471 ~~vta~~dg~~KiW~~~~~~n~-~------k~~s~W~c~~i-~sy--~k~~i~a~~fs~dGslla~s~-~~~Itiwd~~~ 539 (792)
T KOG1963|consen 471 RCVTASVDGDFKIWVFTDDSNI-Y------KKSSNWTCKAI-GSY--HKTPITALCFSQDGSLLAVSF-DDTITIWDYDT 539 (792)
T ss_pred eeEEeccCCeEEEEEEeccccc-C------cCccceEEeee-ecc--ccCcccchhhcCCCcEEEEec-CCEEEEecCCC
Confidence 6889999999999997543330 0 00123433222 223 788999999999998888765 5555 999877
Q ss_pred C
Q 001202 483 K 483 (1124)
Q Consensus 483 g 483 (1124)
.
T Consensus 540 ~ 540 (792)
T KOG1963|consen 540 K 540 (792)
T ss_pred h
Confidence 4
No 171
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.8e-11 Score=133.40 Aligned_cols=185 Identities=19% Similarity=0.202 Sum_probs=114.8
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001202 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1124)
Q Consensus 260 v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~ 339 (1124)
-+++|+++|+.+|+|+.||++|||+... ...+.... +|.+.|.++.|||||+.||+-+.| ..+||++.++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~--------~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEI--------AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhH--------hhcCccccceeCCCCcEEEEecCC-ceEEEEeccC
Confidence 4899999999999999999999999765 22222122 388999999999999999999999 9999999998
Q ss_pred eeeEEeccCC-cCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeE
Q 001202 340 RLMSTIRQIS-LSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQ 418 (1124)
Q Consensus 340 ~l~~tl~~h~-~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~ 418 (1124)
..+.+..... ......+.|+.++.. + +..+.. ...+.+.++.++
T Consensus 218 ~~~a~~t~~~k~~~~~~cRF~~d~~~--~--------------~l~laa-------------------~~~~~~~v~~~~ 262 (398)
T KOG0771|consen 218 AALARKTPFSKDEMFSSCRFSVDNAQ--E--------------TLRLAA-------------------SQFPGGGVRLCD 262 (398)
T ss_pred chhhhcCCcccchhhhhceecccCCC--c--------------eEEEEE-------------------ecCCCCceeEEE
Confidence 6655554211 112233333333210 0 001111 111112222222
Q ss_pred eeecCC-eEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceee
Q 001202 419 VIYGED-RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQK 496 (1124)
Q Consensus 419 l~~~~~-~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~ 496 (1124)
+..... .+ ++ ..+...-...|.++++|+||+++|+|+.||.| +|+..+-+--.+-.+.| .
T Consensus 263 ~~~w~~~~~---------------l~-~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH--~ 324 (398)
T KOG0771|consen 263 ISLWSGSNF---------------LR-LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAH--L 324 (398)
T ss_pred eeeeccccc---------------cc-hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhh--e
Confidence 111000 00 00 11222334469999999999999999999999 99987654333333333 3
Q ss_pred eEEEEEEecCC
Q 001202 497 IQSKGLLWLGK 507 (1124)
Q Consensus 497 ~~v~gl~W~~~ 507 (1124)
+.|+++...++
T Consensus 325 ~~VT~ltF~Pd 335 (398)
T KOG0771|consen 325 GFVTGLTFSPD 335 (398)
T ss_pred eeeeeEEEcCC
Confidence 56777777654
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.32 E-value=7.7e-11 Score=128.12 Aligned_cols=194 Identities=12% Similarity=0.145 Sum_probs=140.4
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccc----------eecCCCCeE-EEEEccCC-CEE
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----------KELGSGDAV-CASIAPEQ-QIL 271 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~----------~~~gh~~~v-~va~spdg-~lL 271 (1124)
..+|.+.|.+++|+|. +...+++|+.|.++++|++.... .+.||...| -|+|+|.. ..|
T Consensus 77 v~GHt~~vLDi~w~Pf---------nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPF---------NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVL 147 (472)
T ss_pred ccCccccccccccCcc---------CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhH
Confidence 4588999999999975 45678889999999999876432 126899999 99999974 568
Q ss_pred EEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcC
Q 001202 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS 351 (1124)
Q Consensus 272 AsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~ 351 (1124)
++++.|.+|.+||+.+ +..+-++. |.+-|.+++|+.||..|++++.|+.|||||..++..+..-.+|...
T Consensus 148 lsag~Dn~v~iWnv~t-geali~l~---------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGT-GEALITLD---------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred hhccCCceEEEEeccC-CceeeecC---------CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC
Confidence 8999999999999998 66555555 9999999999999999999999999999999999988887666433
Q ss_pred ceeeeEEcCCCCCCcceEEEee------eEEEEeCCCCeE--EEEecCCcceEEEEec---cceE--EeeccCCceeeeE
Q 001202 352 SISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRL--YAIEEGSSERVLIFSF---GKCC--LNRGVSGMTYARQ 418 (1124)
Q Consensus 352 ~V~s~~~sp~~~~~~~~l~sg~------~i~~W~~~~~~l--~~~~~~~~~~v~~~s~---~k~~--~s~s~d~~v~~w~ 418 (1124)
.-.-+.|-.++ ..+.+|- .+-+|++++-+- ....-+....| .|.| +..+ +.|-.|+.|+.+.
T Consensus 218 k~~Raifl~~g----~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGv-l~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 218 KPARAIFLASG----KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGV-LLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred CcceeEEeccC----ceeeeccccccccceeccCcccccCcceeEEeccCCce-EEeeecCCCCEEEEEecCCcceEEEE
Confidence 34445565555 5444443 666898875321 11111222233 2233 3332 3555677777766
Q ss_pred eee
Q 001202 419 VIY 421 (1124)
Q Consensus 419 l~~ 421 (1124)
+..
T Consensus 293 it~ 295 (472)
T KOG0303|consen 293 ITN 295 (472)
T ss_pred ecC
Confidence 544
No 173
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=3.4e-11 Score=132.74 Aligned_cols=205 Identities=18% Similarity=0.271 Sum_probs=128.2
Q ss_pred CceEEEEeeCCeEEEEE-cCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeec
Q 001202 21 SQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1124)
Q Consensus 21 ~~~iv~fS~dg~llA~~-~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~ 99 (1124)
.+.+|+|+.||+.+|++ +|++++||+.. ....+ .+-.++++++.++.|||||+.||+.+.+ ..++|+++.+
T Consensus 146 ~~k~vaf~~~gs~latgg~dg~lRv~~~P-s~~t~------l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 146 QQKVVAFNGDGSKLATGGTDGTLRVWEWP-SMLTI------LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred cceEEEEcCCCCEeeeccccceEEEEecC-cchhh------hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC
Confidence 46889999999999996 56789999973 21111 1234678999999999999999999999 8999999875
Q ss_pred CceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCcccc
Q 001202 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (1124)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i 179 (1124)
.. .....+. +.++++..+
T Consensus 218 ~~---~a~~t~~-----------------------------~k~~~~~~c------------------------------ 235 (398)
T KOG0771|consen 218 AA---LARKTPF-----------------------------SKDEMFSSC------------------------------ 235 (398)
T ss_pred ch---hhhcCCc-----------------------------ccchhhhhc------------------------------
Confidence 21 1100000 011111110
Q ss_pred ccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeec----cccceecC
Q 001202 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF----IKIDKELG 255 (1124)
Q Consensus 180 ~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~----~~~~~~~g 255 (1124)
.|+.++. + ... ..++...|-|.+..+ .+.+|+. ...+....
T Consensus 236 ---RF~~d~~------------------~-~~l--------~laa~~~~~~~v~~~-----~~~~w~~~~~l~~~~~~~~ 280 (398)
T KOG0771|consen 236 ---RFSVDNA------------------Q-ETL--------RLAASQFPGGGVRLC-----DISLWSGSNFLRLRKKIKR 280 (398)
T ss_pred ---eecccCC------------------C-ceE--------EEEEecCCCCceeEE-----Eeeeeccccccchhhhhhc
Confidence 0000000 0 000 000011111111110 1222332 11111234
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEE
Q 001202 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1124)
Q Consensus 256 h~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWd 335 (1124)
++...|+++|+||+++|.|+.||.|.|++..+ -+..+-.+ ..|.+.|+.+.|+||.+++++-+.|.+..|-.
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~-lq~~~~vk-------~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAKS-LQRLQYVK-------EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCCcEEEEEece-eeeeEeeh-------hhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 44444999999999999999999999999876 44333332 24999999999999999999999998888887
Q ss_pred cCC
Q 001202 336 VSG 338 (1124)
Q Consensus 336 v~~ 338 (1124)
+..
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 754
No 174
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.1e-11 Score=150.62 Aligned_cols=246 Identities=19% Similarity=0.215 Sum_probs=175.8
Q ss_pred CceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccc---ce------ecCCCCeE-EEEEccCCC-EEEEEec
Q 001202 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI---DK------ELGSGDAV-CASIAPEQQ-ILAVGTR 276 (1124)
Q Consensus 208 ~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~---~~------~~gh~~~v-~va~spdg~-lLAsGs~ 276 (1124)
.....++.|++.... +. -+++.|..||.|.+|+.... .. ...|++.| .+.||+... +||+|+.
T Consensus 64 ~~rF~kL~W~~~g~~-----~~-GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~ 137 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSH-----SH-GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGAD 137 (1049)
T ss_pred cccceeeeecccCCC-----cc-ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCC
Confidence 344556666644321 11 14666778899999987642 11 15799999 999999766 9999999
Q ss_pred CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCC-CCEEEEEECCCcEEEEEcCCCeeeEEeccCCc-Ccee
Q 001202 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL-SSIS 354 (1124)
Q Consensus 277 DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPD-G~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~-~~V~ 354 (1124)
||.|.|||++.... -.+. | +..-.+.|.+++|+.. .+.||+|+.+|.+.|||+...+.+-.+..++. ..++
T Consensus 138 ~geI~iWDlnn~~t-P~~~-----~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 138 DGEILIWDLNKPET-PFTP-----G-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS 210 (1049)
T ss_pred CCcEEEeccCCcCC-CCCC-----C-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence 99999999987222 1111 1 1224677999999864 55899999999999999998877776666533 3488
Q ss_pred eeEEcCCCCCCcceEEEee----eEEEEeCCC-CeEEEEecCCcceEEEEec----cceEEeeccCCceeeeEeeecCCe
Q 001202 355 SPIVKPNQDCKYEPLMSGT----SMMQWDEYG-YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDR 425 (1124)
Q Consensus 355 s~~~sp~~~~~~~~l~sg~----~i~~W~~~~-~~l~~~~~~~~~~v~~~s~----~k~~~s~s~d~~v~~w~l~~~~~~ 425 (1124)
.++|+|+..+. -.++++. .+..||.+. .....+..+|...|+.++. .+.++|.+.|+.+.+|+..+++.
T Consensus 211 ~l~WhP~~aTq-l~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv- 288 (1049)
T KOG0307|consen 211 VLAWHPDHATQ-LLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV- 288 (1049)
T ss_pred eeeeCCCCcee-eeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE-
Confidence 99999997421 2233333 888999653 3344555789999988777 35788999999999999877654
Q ss_pred EEEeecCCCccceeeecccceeeccCCCceEEEEEccCCC-EEEEEcCCCeE-EEEcCCCcEEE
Q 001202 426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKWRV 487 (1124)
Q Consensus 426 l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~-~lAvag~dG~v-lwd~~sg~wk~ 487 (1124)
...+-..+..++.+.|.|... .+|+++-||.| ||++.+..|..
T Consensus 289 -------------------l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~~ 333 (1049)
T KOG0307|consen 289 -------------------LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTDL 333 (1049)
T ss_pred -------------------eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCccc
Confidence 222222344578899998765 89999999999 99998876543
No 175
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.31 E-value=4.4e-10 Score=123.01 Aligned_cols=80 Identities=21% Similarity=0.318 Sum_probs=69.2
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEE
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~ 332 (1124)
.+|.+-+ .++|+|++.++++|+-|.++++||+.. +.....+. + |..-|..++|.|-++++++-+.|+..+
T Consensus 120 r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~----d----h~~yvqgvawDpl~qyv~s~s~dr~~~ 190 (434)
T KOG1009|consen 120 RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAILD----D----HEHYVQGVAWDPLNQYVASKSSDRHPE 190 (434)
T ss_pred cccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEeecc----c----cccccceeecchhhhhhhhhccCcccc
Confidence 5788888 999999999999999999999999998 77666655 3 999999999999999999999999888
Q ss_pred EEEcCCCeee
Q 001202 333 VWSVSGCRLM 342 (1124)
Q Consensus 333 vWdv~~~~l~ 342 (1124)
+.+....+.+
T Consensus 191 ~~~~~~~~~~ 200 (434)
T KOG1009|consen 191 GFSAKLKQVI 200 (434)
T ss_pred eeeeeeeeee
Confidence 8777654433
No 176
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.30 E-value=1.6e-10 Score=122.81 Aligned_cols=228 Identities=14% Similarity=0.147 Sum_probs=151.6
Q ss_pred eeCCeEEEEEcC-CcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCc--eee
Q 001202 28 KVNNGLLLIASP-CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK--SIQ 104 (1124)
Q Consensus 28 S~dg~llA~~~~-~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~--~~~ 104 (1124)
-|+..++|+.+. .-|.|||.- .+..-+++ |.-+.+.+.-...+++|||||.+|..| .+.+|++||+.-... ..+
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaf-tG~lraSy-~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAF-TGKLRASY-RAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred CCccceeeeccccCceeeeecc-ccccccch-hhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcch
Confidence 355678888765 469999995 55444443 332333344444589999999998876 677999999953321 111
Q ss_pred cCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecC---CeEEEEecCCcEEEEeccCccccceeeccCCCCcccccc
Q 001202 105 IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN---KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (1124)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~---~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~ 181 (1124)
.- . ..+ -.+..+.++|++..+ +.+.+++-..++-++.|++.....
T Consensus 197 ~t------------~--~~~---k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~--------------- 244 (406)
T KOG2919|consen 197 TT------------V--TKG---KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ--------------- 244 (406)
T ss_pred hh------------h--hcc---cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee---------------
Confidence 00 0 000 011233456666433 456677767777778888653211
Q ss_pred ccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEec-CCceEeeecccccee----cCC
Q 001202 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE----LGS 256 (1124)
Q Consensus 182 i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~-d~~i~~wd~~~~~~~----~gh 256 (1124)
.+.++++.|+.+.|+ +||..+++++. +..|-.||+...... ..|
T Consensus 245 ---------------------llggh~gGvThL~~~----------edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rh 293 (406)
T KOG2919|consen 245 ---------------------LLGGHGGGVTHLQWC----------EDGNKLFSGARKDDKILCWDIRYSRDPVYALERH 293 (406)
T ss_pred ---------------------eecccCCCeeeEEec----------cCcCeecccccCCCeEEEEeehhccchhhhhhhh
Confidence 234788999999888 67777777763 556888998764321 344
Q ss_pred CC----eEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCC
Q 001202 257 GD----AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (1124)
Q Consensus 257 ~~----~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg 329 (1124)
.+ .|-....|+++.||+|+.||.|++||+++.+.....+. .|...|+.++++|--..+|+++...
T Consensus 294 v~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~--------~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 294 VGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG--------NYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred ccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc--------cccccccceecCcccceeeeccCce
Confidence 44 34556679999999999999999999998665444333 3788899999999988888887653
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.30 E-value=1.9e-10 Score=120.51 Aligned_cols=247 Identities=15% Similarity=0.128 Sum_probs=155.8
Q ss_pred EeeC-CeEEEEEcC--------CcEEEEecCCCceeEEEEeeChHHH-----hhhcceeEEEEecCCcEEEEEeCCCeEE
Q 001202 27 FKVN-NGLLLIASP--------CHIELWSSSQHKVRLGKYKRDSESV-----QREGENLQAVWSPDTKLIAVVTSSLYLH 92 (1124)
Q Consensus 27 fS~d-g~llA~~~~--------~~l~IW~~~~~~~~l~~~~r~~~sl-----~~~G~~~~v~wSPDg~~Lav~t~dg~l~ 92 (1124)
-+|- .++||++.. ..+.||...++..+ +-..+.+.+ +..|.+.++.|-|++..||.-+ ++.|.
T Consensus 71 s~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~--S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~ 147 (370)
T KOG1007|consen 71 SSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ--SNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIV 147 (370)
T ss_pred cCCCCCceEEEEEeccCCCcceeeEEEEecccccCc--cccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceE
Confidence 3454 457777653 24789998644332 111112222 3468889999999999998876 77899
Q ss_pred EEEeeecCceeec-CCCCC--CCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCccccc-ee
Q 001202 93 IFKVQITEKSIQI-GGKQP--SGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGA-FE 168 (1124)
Q Consensus 93 i~~v~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~-~~ 168 (1124)
+|+++.+.+.... ..... ....+.+..|++. .+...+.++.+++++. ||-.+-.. ..
T Consensus 148 l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspH-----------------Hdgnqv~tt~d~tl~~--~D~RT~~~~~s 208 (370)
T KOG1007|consen 148 LWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPH-----------------HDGNQVATTSDSTLQF--WDLRTMKKNNS 208 (370)
T ss_pred EEEcccCcchheeecccccccccceecccccCCC-----------------CccceEEEeCCCcEEE--EEccchhhhcc
Confidence 9999876553211 10000 0111222223222 2345677788999887 44332211 11
Q ss_pred eccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecc
Q 001202 169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI 248 (1124)
Q Consensus 169 l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~ 248 (1124)
.-..|+..|++++|+|.. ..+++++++|+.+++||..
T Consensus 209 ----------------------------------I~dAHgq~vrdlDfNpnk---------q~~lvt~gDdgyvriWD~R 245 (370)
T KOG1007|consen 209 ----------------------------------IEDAHGQRVRDLDFNPNK---------QHILVTCGDDGYVRIWDTR 245 (370)
T ss_pred ----------------------------------hhhhhcceeeeccCCCCc---------eEEEEEcCCCccEEEEecc
Confidence 123677789999998643 2356777889999999987
Q ss_pred ccce----ecCCCCeE-EEEEccC-CCEEEEEecCCeEEEEEcCCCCce-----------------eEEE-eecc--CCC
Q 001202 249 KIDK----ELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESASL-----------------IRTV-SLYD--WGY 302 (1124)
Q Consensus 249 ~~~~----~~gh~~~v-~va~spd-g~lLAsGs~DgtV~vwd~~~~~~~-----------------~~~l-~~~~--~g~ 302 (1124)
..+. +.+|...| ||.|||. .++|.+|+.|..|.+|....-.+. .... .+.+ ...
T Consensus 246 ~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~t 325 (370)
T KOG1007|consen 246 KTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLET 325 (370)
T ss_pred CCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccc
Confidence 6532 36899999 9999997 568899999999999986431100 0000 0000 001
Q ss_pred CCCCCCCeEEEEECC-CCCEEEEEECCCcEEEEEcCC
Q 001202 303 SMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSG 338 (1124)
Q Consensus 303 ~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I~vWdv~~ 338 (1124)
-.+|...|.+++||. |-=.+|+-+.||.+.|=++..
T Consensus 326 ydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 326 YDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 135899999999986 556889999999988876643
No 178
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=99.29 E-value=7.3e-11 Score=138.59 Aligned_cols=337 Identities=16% Similarity=0.188 Sum_probs=182.7
Q ss_pred ceEEEEEccCCCEEEEEcCCCeEEEEcCCCcEEEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeCCCCCC
Q 001202 454 PVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQ 533 (1124)
Q Consensus 454 ~I~~va~SpdG~~lAvag~dG~vlwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~~~ld~ 533 (1124)
..++++++|+|++++++|.....+|.....+-+.+| ....++|....-.+. . +....+.+|.. +++
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G--------~g~~~vw~~~n~yAv-~---~~~~~I~I~kn--~~~ 99 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFG--------SGLSFVWSSRNRYAV-L---ESSSTIKIYKN--FKN 99 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEE--------E-SEEEE-TSSEEEE-E----TTS-EEEEET--TEE
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccC--------ceeEEEEecCccEEE-E---ECCCeEEEEEc--Ccc
Confidence 467899999999999987776669986555544432 344678875433222 1 22346888722 222
Q ss_pred cceEEEeecCCccEEEEeeCCEEEEEEcCCeEEEEEEEEecccCCCCCCcEEEEEEEEEeeeccccCCceEEEccCCCcc
Q 001202 534 SSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPR 613 (1124)
Q Consensus 534 ~~~l~~~~l~s~~l~l~~~~~~llv~~~d~~i~l~~~~~~~~~~~~~~~~i~l~~~~~i~i~~~~~hp~~v~~i~~~~~~ 613 (1124)
... . .++.+.-.-..+++.++...++..+.+|+++- +. .+++|.+. .|+.|-|...
T Consensus 100 ~~~-k--~i~~~~~~~~If~G~LL~~~~~~~i~~yDw~~-~~------------~i~~i~v~-------~vk~V~Ws~~- 155 (443)
T PF04053_consen 100 EVV-K--SIKLPFSVEKIFGGNLLGVKSSDFICFYDWET-GK------------LIRRIDVS-------AVKYVIWSDD- 155 (443)
T ss_dssp -TT--------SS-EEEEE-SSSEEEEETTEEEEE-TTT---------------EEEEESS--------E-EEEEE-TT-
T ss_pred ccc-e--EEcCCcccceEEcCcEEEEECCCCEEEEEhhH-cc------------eeeEEecC-------CCcEEEEECC-
Confidence 110 0 12222223345557777777777899999861 11 25666654 2555666300
Q ss_pred ccccCCCCCCcccccccCCceeEEEeeCCEEEEEecCCC---cceeeccceeEEEEcCCCCcccccccceeeEEEECCCC
Q 001202 614 ECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDG---RERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRG 690 (1124)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~lil~~~g~l~~l~~~~~---~~~~l~~~VE~~w~~~~~~~~~~~~~~~~~~~~~~~~g 690 (1124)
++-++.......+|++.+-+.+.-..++| .-.++.+..|+ +.++.|.++ .++|+..+
T Consensus 156 ----------g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~--IkSg~W~~d--------~fiYtT~~ 215 (443)
T PF04053_consen 156 ----------GELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISER--IKSGCWVED--------CFIYTTSN 215 (443)
T ss_dssp ----------SSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S----SEEEEETT--------EEEEE-TT
T ss_pred ----------CCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecce--eEEEEEEcC--------EEEEEcCC
Confidence 11122222222333333332111111122 11233332333 222334333 38888888
Q ss_pred cEEeecCCCCCCCCcccccccCCcccccCceeeeeeccCCcEEEEEeeeeeecc-CcCccceeccCcccccHHHHHHHHH
Q 001202 691 MQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSA-CTEFPCFEPTPQAQTILHCLLRHLL 769 (1124)
Q Consensus 691 ~~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~yPl~i~~~~~~i~G~~~~~~~~~-~~~~~~~~~~~~~~~~L~~il~~ll 769 (1124)
++-| +.+++ ..+.-++|..+|.++++++++.++.++.+..+.+ .++...+++ +..|
T Consensus 216 -~lkY-l~~Ge---------~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~f------------k~av 272 (443)
T PF04053_consen 216 -HLKY-LVNGE---------TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSELEF------------KTAV 272 (443)
T ss_dssp -EEEE-EETTE---------EEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHHHH------------HHHH
T ss_pred -eEEE-EEcCC---------cceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHHHHH------------HHHH
Confidence 9988 44332 2233356788999999999999999986532211 122233433 4466
Q ss_pred hcccHHHHHHHHHHcCCCCCchHHHHHHHHHHhhcccccccccccccCCccccchhhhHHHHHHHhHcCchhHHHHHhhc
Q 001202 770 QRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVA 849 (1124)
Q Consensus 770 ~~~~~~~a~~~a~~~~~l~~F~h~LE~lLh~vle~e~~~~~~~~~~~~i~~~~~~~~ll~~v~~fi~~f~~~l~ivv~ca 849 (1124)
.|++.+++.++.+. ..++ | .||. ++..++++||+.. +|.|+..+++
T Consensus 273 ~~~d~~~v~~~i~~---------------~~ll--------~-----~i~~-----~~~~~i~~fL~~~-G~~e~AL~~~ 318 (443)
T PF04053_consen 273 LRGDFEEVLRMIAA---------------SNLL--------P-----NIPK-----DQGQSIARFLEKK-GYPELALQFV 318 (443)
T ss_dssp HTT-HHH-----HH---------------HHTG--------G-----G--H-----HHHHHHHHHHHHT-T-HHHHHHHS
T ss_pred HcCChhhhhhhhhh---------------hhhc--------c-----cCCh-----hHHHHHHHHHHHC-CCHHHHHhhc
Confidence 77887776654320 0011 1 3665 7889999999988 9999999999
Q ss_pred ccccccchHHHHhhcCChHHHHHHHHhcCcHHHHhhHHhhhhhccCchhhHHHHHHHHHHHHhcccHhHHHHHHHhhh
Q 001202 850 RKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLL 927 (1124)
Q Consensus 850 RKtE~~~W~~LF~~~g~P~~Lf~~cl~~~~l~taa~yLivl~n~e~~~~~~~~a~~Ll~~al~~~~w~l~~eL~RFl~ 927 (1124)
+..+.+ ||.+|+.|+|++|..+..-+. +.++|.+|.+.||.+|+.++|.+-..-.+
T Consensus 319 ~D~~~r---------------FeLAl~lg~L~~A~~~a~~~~-------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 319 TDPDHR---------------FELALQLGNLDIALEIAKELD-------DPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp S-HHHH---------------HHHHHHCT-HHHHHHHCCCCS-------THHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred CChHHH---------------hHHHHhcCCHHHHHHHHHhcC-------cHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 999999 999999999999999887443 56799999999999999999988765444
No 179
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.2e-10 Score=138.89 Aligned_cols=234 Identities=12% Similarity=0.072 Sum_probs=143.7
Q ss_pred CcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCC---CeEEEEEeeecCceeecCCCCCCCccee
Q 001202 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (1124)
Q Consensus 40 ~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d---g~l~i~~v~~~~~~~~~~~~~~~~~~~~ 116 (1124)
..|.|||.. ...+ .... ...+.+....|||||+.||.++.+ ..|.+|++.++.......
T Consensus 184 ~~i~i~d~d-g~~~-~~lt------~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~---------- 245 (429)
T PRK01742 184 YEVRVADYD-GFNQ-FIVN------RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS---------- 245 (429)
T ss_pred EEEEEECCC-CCCc-eEec------cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec----------
Confidence 479999985 2211 1111 123456789999999999988754 368999987643211100
Q ss_pred eEEEEeeeeeecccccceEEEEeecCCeEEEEe-cCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccC
Q 001202 117 KISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT 195 (1124)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t-~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~ 195 (1124)
+.+.. ..-++++|++.++++. .+|...+|.|+........
T Consensus 246 -----------~~g~~-~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~--------------------------- 286 (429)
T PRK01742 246 -----------FRGHN-GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ--------------------------- 286 (429)
T ss_pred -----------CCCcc-CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe---------------------------
Confidence 01111 1235677888888765 5887777777653221111
Q ss_pred CCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEe-cCCceEeeecccc--c-eecCCCCeEEEEEccCCCEE
Q 001202 196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKI--D-KELGSGDAVCASIAPEQQIL 271 (1124)
Q Consensus 196 ~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~-~d~~i~~wd~~~~--~-~~~gh~~~v~va~spdg~lL 271 (1124)
+..+...+. ...++|||+.++..+ .++..++|+.... . ...++.. .+.+|+|||+.|
T Consensus 287 --------lt~~~~~~~----------~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~i 347 (429)
T PRK01742 287 --------LTSGAGNNT----------EPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTL 347 (429)
T ss_pred --------eccCCCCcC----------CEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEE
Confidence 111111222 345568888666555 4567777765321 1 1123333 457899999999
Q ss_pred EEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcC--CCeeeEEeccCC
Q 001202 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--GCRLMSTIRQIS 349 (1124)
Q Consensus 272 AsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~--~~~l~~tl~~h~ 349 (1124)
|+++.++.+ +||+.+ +.... +. . + + ...+++|+|||+.|+.++.+++..+|.+. .+....++.+|
T Consensus 348 a~~~~~~i~-~~Dl~~-g~~~~-lt--~-~----~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~- 414 (429)
T PRK01742 348 VMINGDNVV-KQDLTS-GSTEV-LS--S-T----F--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS- 414 (429)
T ss_pred EEEcCCCEE-EEECCC-CCeEE-ec--C-C----C--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC-
Confidence 998877655 489876 44322 22 0 1 1 23467899999999999999999888763 45677788766
Q ss_pred cCceeeeEEcCCC
Q 001202 350 LSSISSPIVKPNQ 362 (1124)
Q Consensus 350 ~~~V~s~~~sp~~ 362 (1124)
...+..++|+|..
T Consensus 415 ~g~~~~p~wsp~~ 427 (429)
T PRK01742 415 DGQVKFPAWSPYL 427 (429)
T ss_pred CCCCCCcccCCCC
Confidence 4667888888753
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.29 E-value=9.2e-12 Score=145.48 Aligned_cols=225 Identities=15% Similarity=0.259 Sum_probs=163.5
Q ss_pred eEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEee
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~ 297 (1124)
+++++...|++++++++|.-+++|...++.++ .||..-+ .++++.+..++|+++.|..|++|.+.+ +.++..+.
T Consensus 194 yca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~-~~pvsvLr- 271 (1113)
T KOG0644|consen 194 YCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD-GAPVSVLR- 271 (1113)
T ss_pred eeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC-CchHHHHh-
Confidence 56777789999999999999999998888765 7999888 999999999999999999999999998 77777676
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcC--------------CCeeeEEeccCCcCceeeeEEcCCCC
Q 001202 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--------------GCRLMSTIRQISLSSISSPIVKPNQD 363 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~--------------~~~l~~tl~~h~~~~V~s~~~sp~~~ 363 (1124)
| |+|.|++++|||-- +.+.||++++||.. ++.+++++.... ..-....-+.++.
T Consensus 272 ---g----htgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~-~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 272 ---G----HTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFEN-NGDRFLTGSRDGE 339 (1113)
T ss_pred ---c----cccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccc-cccccccccCCcc
Confidence 6 99999999999954 78899999999975 223333332110 0000000000000
Q ss_pred ----------CC-------------cceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec----cceEEeeccCCc
Q 001202 364 ----------CK-------------YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGM 413 (1124)
Q Consensus 364 ----------~~-------------~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~----~k~~~s~s~d~~ 413 (1124)
++ ....++.. ..+.|+..++++.....+|.+.++++.+ .+...+++.||.
T Consensus 340 a~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs 419 (1113)
T KOG0644|consen 340 ARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS 419 (1113)
T ss_pred cccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc
Confidence 00 01111111 5678999999999988888888766655 455678999999
Q ss_pred eeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEc
Q 001202 414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 414 v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~ 480 (1124)
..+|++-.|.. +..-..+| +.+....||+||..++...+-|.+ +...
T Consensus 420 t~iwdi~eg~p-------------------ik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 420 TIIWDIWEGIP-------------------IKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred eEeeecccCCc-------------------ceeeeccc-ceeeccccCCCCceEecCCCCCceEEecc
Confidence 99999766544 11122343 456678999999999998888888 6554
No 181
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.28 E-value=1.5e-09 Score=115.65 Aligned_cols=359 Identities=17% Similarity=0.184 Sum_probs=191.4
Q ss_pred ceEEEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEE-EEeCCCeEEEEEeeecC
Q 001202 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIA-VVTSSLYLHIFKVQITE 100 (1124)
Q Consensus 22 ~~iv~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~La-v~t~dg~l~i~~v~~~~ 100 (1124)
.+..+|||+|+++|++.+..+.|=|.+ .. ++... +.--..+.-+.|+-|+-.+. +...++.|.+|++...+
T Consensus 11 ~~~c~fSp~g~yiAs~~~yrlviRd~~-tl-q~~ql------f~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe 82 (447)
T KOG4497|consen 11 NPFCSFSPCGNYIASLSRYRLVIRDSE-TL-QLHQL------FLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE 82 (447)
T ss_pred CCceeECCCCCeeeeeeeeEEEEeccc-hh-hHHHH------HHHHHHhhheeeeccceeeeeeeeccceEEEEEeecce
Confidence 446789999999999999999898886 21 11111 00124567899999998654 55667799999997532
Q ss_pred ceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEec-CCcEEEEeccCccccceeeccCCCCcccc
Q 001202 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (1124)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~-dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i 179 (1124)
-.. ++.-+....+..++++|+.+++..++ +-.+.+|+...... .-
T Consensus 83 w~c---------------------kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~--~~----------- 128 (447)
T KOG4497|consen 83 WYC---------------------KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG--YL----------- 128 (447)
T ss_pred eEE---------------------EeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee--EE-----------
Confidence 100 00111112234567778877777654 44555544332211 10
Q ss_pred ccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee------
Q 001202 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------ 253 (1124)
Q Consensus 180 ~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~------ 253 (1124)
....+..+. .+++++||++.+...........+....+.|
T Consensus 129 ------------------------~~~pK~~~k----------g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f 174 (447)
T KOG4497|consen 129 ------------------------LPHPKTNVK----------GYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEF 174 (447)
T ss_pred ------------------------ecccccCce----------eEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhc
Confidence 011112222 3556688888887664322211111111111
Q ss_pred -cCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEE
Q 001202 254 -LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1124)
Q Consensus 254 -~gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~ 332 (1124)
.+.-|.+.+.|+|||..||+ ||--- -..+-..+ ..-++..++|||.|++||+|+.|+.+|
T Consensus 175 ~~dT~DltgieWsPdg~~laV---------wd~~L----eykv~aYe------~~lG~k~v~wsP~~qflavGsyD~~lr 235 (447)
T KOG4497|consen 175 KLDTIDLTGIEWSPDGNWLAV---------WDNVL----EYKVYAYE------RGLGLKFVEWSPCNQFLAVGSYDQMLR 235 (447)
T ss_pred CCCcccccCceECCCCcEEEE---------ecchh----hheeeeee------eccceeEEEeccccceEEeeccchhhh
Confidence 22334457899999998875 43211 00000111 113489999999999999999999999
Q ss_pred EEEcCCCeeeEEeccCCcCcee--------------------eeEEcCCCCCCcceEEEeeeEEEEeCC--CCeE-----
Q 001202 333 VWSVSGCRLMSTIRQISLSSIS--------------------SPIVKPNQDCKYEPLMSGTSMMQWDEY--GYRL----- 385 (1124)
Q Consensus 333 vWdv~~~~l~~tl~~h~~~~V~--------------------s~~~sp~~~~~~~~l~sg~~i~~W~~~--~~~l----- 385 (1124)
|-+-.+-+.+..+.. ...+. ++.|.|.+- ....|... -|+.
T Consensus 236 vlnh~tWk~f~eflh--l~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~----------~a~~~~~se~~YE~~~~pv 303 (447)
T KOG4497|consen 236 VLNHFTWKPFGEFLH--LCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDL----------EAHIWEESETIYEQQMTPV 303 (447)
T ss_pred hhceeeeeehhhhcc--chhccCchhhhhhhhhcchhhhcccccccCCCcc----------ccCccccchhhhhhhhcce
Confidence 855544333222211 11111 122222110 11112111 0111
Q ss_pred -EEEecC------Cc--ceEEEEec-cceEEeeccC--CceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCC
Q 001202 386 -YAIEEG------SS--ERVLIFSF-GKCCLNRGVS--GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (1124)
Q Consensus 386 -~~~~~~------~~--~~v~~~s~-~k~~~s~s~d--~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~ 453 (1124)
+...+. .. ...++|+. ...++|.+.. +.+-+||+..-+ ....+....
T Consensus 304 ~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~---------------------l~avLiQk~ 362 (447)
T KOG4497|consen 304 KVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK---------------------LHAVLIQKH 362 (447)
T ss_pred eeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh---------------------hhhhhhhcc
Confidence 111110 01 11245555 3344444332 233444432211 122334556
Q ss_pred ceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEec--CCEEEEE
Q 001202 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVC 512 (1124)
Q Consensus 454 ~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~--~~~liv~ 512 (1124)
||+...|+|....++++...... +|....- ...++... .|.+..++|. ++.++.+
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~--~~V~vP~~--GF~i~~l~W~~~g~~i~l~ 420 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP--RVVGVPKK--GFNIQKLQWLQPGEFIVLC 420 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCc--eEEecCCC--CceeeeEEecCCCcEEEEE
Confidence 89999999999999988777777 9987542 23344332 3889999996 5676665
No 182
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.28 E-value=6.8e-10 Score=116.41 Aligned_cols=215 Identities=18% Similarity=0.206 Sum_probs=153.5
Q ss_pred CCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECC--CCCEEEEEECCCcEEE
Q 001202 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTV 333 (1124)
Q Consensus 257 ~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP--DG~~Lasgs~Dg~I~v 333 (1124)
-+.+ |+.|.|++..+|+-. |..|.+|+++...+....+.. ..+.+|+...++-+||| ||+.+++.+ |++++.
T Consensus 123 vg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~s---s~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~ 197 (370)
T KOG1007|consen 123 VGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLS---SESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQF 197 (370)
T ss_pred hCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecc---cccccccceecccccCCCCccceEEEeC-CCcEEE
Confidence 3466 999999999888765 889999999883332333321 12234666778889999 888888876 589999
Q ss_pred EEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCC-eEEEEecCCcceEEEEec----cceE
Q 001202 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY-RLYAIEEGSSERVLIFSF----GKCC 405 (1124)
Q Consensus 334 Wdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~-~l~~~~~~~~~~v~~~s~----~k~~ 405 (1124)
||+.+......++..|...|.++.|.|+- ...+++++ .+++||.... ..+....+|...+|++.| ...+
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnk---q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNK---QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCc---eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 99999888888887556789999999985 24567765 8999998754 456677889999987776 5678
Q ss_pred EeeccCCceeeeEeeecCCeEEEeecCCCccc-------eeeecc--cceeeccCCCceEEEEEccCCC-EEEEEcCCCe
Q 001202 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL-------KILHLN--LPVSYISQNWPVQHVAASKDGM-FLAVAGLHGL 475 (1124)
Q Consensus 406 ~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~-------~w~~~~--~p~~~~~~~~~I~~va~SpdG~-~lAvag~dG~ 475 (1124)
+|++.|..+.+|....-...--+..+++..+. +...++ ...+|..|...|.+++||.-.. .+|+=+.||.
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGR 354 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGR 354 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCce
Confidence 99999999998875432222222222221111 111111 2347889999999999986555 5678899999
Q ss_pred EEEE
Q 001202 476 ILYD 479 (1124)
Q Consensus 476 vlwd 479 (1124)
++-+
T Consensus 355 viIs 358 (370)
T KOG1007|consen 355 VIIS 358 (370)
T ss_pred EEee
Confidence 8444
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=4e-11 Score=135.96 Aligned_cols=234 Identities=14% Similarity=0.094 Sum_probs=146.3
Q ss_pred EEEEecCCcEEEEEecCCceEeeeccccc-----------eecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCC-
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKID-----------KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA- 289 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~-----------~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~- 289 (1124)
...+.+.-..+++++.++++++|+..... .+.+|..+| |+++++.+..+.+|+-||+|+.|++....
T Consensus 299 ~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d 378 (577)
T KOG0642|consen 299 ALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD 378 (577)
T ss_pred hhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC
Confidence 33444566678888899999999883211 126899999 99999999999999999999999764211
Q ss_pred ----ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCc-CceeeeEEcCCCCC
Q 001202 290 ----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL-SSISSPIVKPNQDC 364 (1124)
Q Consensus 290 ----~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~-~~V~s~~~sp~~~~ 364 (1124)
.-...+. |.-.+|++.|+.+++|+....|++++.||+++.|...+... +++..... ..-.++.+-....
T Consensus 379 p~ds~dp~vl~----~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~- 452 (577)
T KOG0642|consen 379 PDDSYDPSVLS----GTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRP- 452 (577)
T ss_pred cccccCcchhc----cceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchh-
Confidence 1111222 11124999999999999999999999999999999987766 55543210 0111222211000
Q ss_pred CcceEEEeeeEEEE---eCCCCeEEEEecC----------CcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeec
Q 001202 365 KYEPLMSGTSMMQW---DEYGYRLYAIEEG----------SSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQS 431 (1124)
Q Consensus 365 ~~~~l~sg~~i~~W---~~~~~~l~~~~~~----------~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~ 431 (1124)
...+++ ...... +.+..+-+.+... +-..|+.-+-+....++..|+.+++.+...+.-
T Consensus 453 -a~~~~s-~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~------- 523 (577)
T KOG0642|consen 453 -AHSLAS-FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI------- 523 (577)
T ss_pred -Hhhhhh-cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc-------
Confidence 000000 011111 1111111111110 011112212244555666777777766555443
Q ss_pred CCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 432 ~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
......|...+.++++.|+|-+|++++.||.+ +|.+..+.
T Consensus 524 -------------l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 524 -------------LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred -------------chheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 44556788889999999999999999999999 99886543
No 184
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=6.5e-10 Score=133.35 Aligned_cols=291 Identities=15% Similarity=0.177 Sum_probs=165.3
Q ss_pred eEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEee----cCCeEE
Q 001202 71 LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS----DNKHML 146 (1124)
Q Consensus 71 ~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~----d~~~ll 146 (1124)
..+.|.|=...++++.....|++||.+.+..-..+....... ..|+.+.. |...++
T Consensus 1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~--------------------t~Vs~l~liNe~D~aLlL 1127 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPD--------------------TRVSDLELINEQDDALLL 1127 (1387)
T ss_pred ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCC--------------------Cccceeeeecccchhhee
Confidence 467888888899999888899999988654321121111111 12222221 345688
Q ss_pred EEecCCcEEEEeccCcccc--ceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEE
Q 001202 147 LGLSDGSLYSISWKGEFYG--AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1124)
Q Consensus 147 v~t~dg~v~~~~Wd~~~~~--~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~ 224 (1124)
+|+.||.|++ |+.-... ... +-+.-++..+++.... ..+.+ ++|.
T Consensus 1128 tas~dGvIRI--wk~y~~~~~~~e----------LVTaw~~Ls~~~~~~r------------~~~~v--~dWq------- 1174 (1387)
T KOG1517|consen 1128 TASSDGVIRI--WKDYADKWKKPE----------LVTAWSSLSDQLPGAR------------GTGLV--VDWQ------- 1174 (1387)
T ss_pred eeccCceEEE--ecccccccCCce----------eEEeeccccccCccCC------------CCCee--eehh-------
Confidence 8999999998 4432221 111 1110111111111100 01111 1121
Q ss_pred EEecCCcEEEEEecCCceEeeecccccee----cCCCCeE-EEEEc-cCCCEEEEEecCCeEEEEEcCCCCc--eeEEEe
Q 001202 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIA-PEQQILAVGTRRGVVELYDLAESAS--LIRTVS 296 (1124)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~wd~~~~~~~----~gh~~~v-~va~s-pdg~lLAsGs~DgtV~vwd~~~~~~--~~~~l~ 296 (1124)
-..|.+ +++++-..+++||..+..+. .+.+..+ +++-+ +.|..||.|..||.|++||...... .+...+
T Consensus 1175 --Q~~G~L-l~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1175 --QQSGHL-LVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred --hhCCeE-EecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 134544 44455778999998876554 2222222 33222 2379999999999999999876322 333333
Q ss_pred eccCCCCCCCCCC--eEEEEECCCCCE-EEEEECCCcEEEEEcCCCeeeEE--eccCC--cCceeeeEEcCCCCCCcceE
Q 001202 297 LYDWGYSMDDTGP--VSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMST--IRQIS--LSSISSPIVKPNQDCKYEPL 369 (1124)
Q Consensus 297 ~~~~g~~~~h~g~--V~~lawSPDG~~-Lasgs~Dg~I~vWdv~~~~l~~t--l~~h~--~~~V~s~~~sp~~~~~~~~l 369 (1124)
.|+.. |..+.+-+.|-. |++|+.||.|++||+........ +..|. .+..+++..|+.. ..+
T Consensus 1252 --------~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~ha----pii 1319 (1387)
T KOG1517|consen 1252 --------EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHA----PII 1319 (1387)
T ss_pred --------ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCC----Cee
Confidence 37666 999999998875 99999999999999987421111 11111 1124555555554 444
Q ss_pred EEee--eEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeeccccee
Q 001202 370 MSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (1124)
Q Consensus 370 ~sg~--~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~ 447 (1124)
++|+ .+++|+..|.++-.. .+. | .
T Consensus 1320 AsGs~q~ikIy~~~G~~l~~~---------------------------------------k~n--------------~-~ 1345 (1387)
T KOG1517|consen 1320 ASGSAQLIKIYSLSGEQLNII---------------------------------------KYN--------------P-G 1345 (1387)
T ss_pred eecCcceEEEEecChhhhccc---------------------------------------ccC--------------c-c
Confidence 5444 444555443322110 000 1 1
Q ss_pred ec-cCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCC
Q 001202 448 YI-SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 448 ~~-~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg 483 (1124)
+. ...+.+.|++|+|---.+|+|..|.+| +|....+
T Consensus 1346 F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1346 FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 11 123456899999999999999999999 9987544
No 185
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.25 E-value=6.6e-10 Score=123.64 Aligned_cols=204 Identities=12% Similarity=0.094 Sum_probs=148.9
Q ss_pred CCcEEEEEecCCceEeeeccccc---eecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCC
Q 001202 229 NGQLMSCSVSKKGLKLAEFIKID---KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (1124)
Q Consensus 229 dG~~~~~~~~d~~i~~wd~~~~~---~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~ 304 (1124)
...+.++++..+++++||..... ...+|.+.| ||.+|....+||+++..|.|.|..+.+ +....++.. +
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~~---~--- 162 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFTI---D--- 162 (673)
T ss_pred cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-Cccccceec---C---
Confidence 34677788889999999987322 237999999 999999999999999999999999987 433334431 1
Q ss_pred CCCCCeEEEEECCCCC-EEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceE-EEee---eEEEEe
Q 001202 305 DDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT---SMMQWD 379 (1124)
Q Consensus 305 ~h~g~V~~lawSPDG~-~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l-~sg~---~i~~W~ 379 (1124)
....|.-+.|||..+ .|.+++++|.|.+||+.+..........|..+...++|+|.. +.+ ++-+ ++.++|
T Consensus 163 -sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn----e~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 163 -SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN----EALLVSVGYDKKINIYD 237 (673)
T ss_pred -CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc----cceEEEecccceEEEee
Confidence 234567999999877 667889999999999999887766655448889999999987 444 4422 777888
Q ss_pred CCCCeEEEEe-cCCcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccc-eeeccCCCceE
Q 001202 380 EYGYRLYAIE-EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWPVQ 456 (1124)
Q Consensus 380 ~~~~~l~~~~-~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p-~~~~~~~~~I~ 456 (1124)
....+....+ ..|.-.-++|.. |..++.|+..|.+..+|+..... | .....|...|+
T Consensus 238 ~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~--------------------Pv~v~sah~~sVt 297 (673)
T KOG4378|consen 238 IRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA--------------------PVAVRSAHDASVT 297 (673)
T ss_pred cccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCC--------------------CceEeeeccccee
Confidence 7755433222 123223355555 77888898899988888776555 4 34446777788
Q ss_pred EEEEccCC
Q 001202 457 HVAASKDG 464 (1124)
Q Consensus 457 ~va~SpdG 464 (1124)
+++|-|.-
T Consensus 298 ~vafq~s~ 305 (673)
T KOG4378|consen 298 RVAFQPSP 305 (673)
T ss_pred EEEeeecc
Confidence 88886543
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.25 E-value=8.2e-09 Score=118.99 Aligned_cols=268 Identities=15% Similarity=0.173 Sum_probs=154.9
Q ss_pred EEEEecCCceEeeeccc-cc--ee--cCC-CCeEEEEEccCCCEEEEEe-cCCeEEEEEcCCCCceeEEEeeccCCCCCC
Q 001202 233 MSCSVSKKGLKLAEFIK-ID--KE--LGS-GDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (1124)
Q Consensus 233 ~~~~~~d~~i~~wd~~~-~~--~~--~gh-~~~v~va~spdg~lLAsGs-~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~ 305 (1124)
+++...++++.+|+..+ ++ .. ..+ ..+..++++|++++|++++ .++.|.+|+++..+.. ...... .
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~--~---- 77 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAES--P---- 77 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeeee--c----
Confidence 44445677777887743 21 11 122 2334899999999887664 5889999999742332 211111 1
Q ss_pred CCCCeEEEEECCCCCEEEEEEC-CCcEEEEEcCC-C---eeeEEeccCCcCceeeeEEcCCCCCCcceEEE-ee---eEE
Q 001202 306 DTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSG-C---RLMSTIRQISLSSISSPIVKPNQDCKYEPLMS-GT---SMM 376 (1124)
Q Consensus 306 h~g~V~~lawSPDG~~Lasgs~-Dg~I~vWdv~~-~---~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~s-g~---~i~ 376 (1124)
..+....++|+|||+.+++++. ++.|.+|++.. + .....+.+ ......++++|++ +.+.. .. ++.
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g----~~l~v~~~~~~~v~ 151 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDN----RTLWVPCLKEDRIR 151 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCC----CEEEEeeCCCCEEE
Confidence 2334678999999998888764 78999999963 2 22333332 2345667889987 55533 22 888
Q ss_pred EEeCCCC-eEE-------EEecCCcceEEEEec-cceEEeecc-CCceeeeEeeecCCeEEEeecCCCccceeeecccce
Q 001202 377 QWDEYGY-RLY-------AIEEGSSERVLIFSF-GKCCLNRGV-SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV 446 (1124)
Q Consensus 377 ~W~~~~~-~l~-------~~~~~~~~~v~~~s~-~k~~~s~s~-d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~ 446 (1124)
+|+.++. .+. ....+...+-..|++ ++.+...+. ++++.+|++......+..... ....|.
T Consensus 152 v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~---------~~~~p~ 222 (330)
T PRK11028 152 LFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT---------LDMMPA 222 (330)
T ss_pred EEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE---------EecCCC
Confidence 9998753 221 111222222356667 676655554 889999998643222111110 001122
Q ss_pred eeccCCCceEEEEEccCCCEEEEEcC-CCeE-EEEcCC--CcEEEecCcCceeeeEEEEEEe--cCCEEEEEEEecCCCe
Q 001202 447 SYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIRQ--KKWRVFGDITQEQKIQSKGLLW--LGKIIVVCNYIDSSNT 520 (1124)
Q Consensus 447 ~~~~~~~~I~~va~SpdG~~lAvag~-dG~v-lwd~~s--g~wk~f~~~~~e~~~~v~gl~W--~~~~liv~~~~~~~~~ 520 (1124)
.+.+..++ ..+.++|||++++++.+ ++.+ +|++.. +.++..+...-. ....++.+ .+.++++++.. .
T Consensus 223 ~~~~~~~~-~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~----~ 295 (330)
T PRK11028 223 DFSDTRWA-ADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQK----S 295 (330)
T ss_pred cCCCCccc-eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEcc----C
Confidence 22222333 36889999999999965 5778 999854 344433221111 01223444 46788887542 2
Q ss_pred EEEEEeeCC
Q 001202 521 YELLFYPRY 529 (1124)
Q Consensus 521 ~elrly~~~ 529 (1124)
..+.+|..+
T Consensus 296 ~~v~v~~~~ 304 (330)
T PRK11028 296 HHISVYEID 304 (330)
T ss_pred CcEEEEEEc
Confidence 378888763
No 187
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.23 E-value=5.6e-10 Score=128.03 Aligned_cols=241 Identities=15% Similarity=0.173 Sum_probs=151.3
Q ss_pred ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCC-EEEEEECCCc
Q 001202 253 ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRG 330 (1124)
Q Consensus 253 ~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~-~Lasgs~Dg~ 330 (1124)
+..|..++ .++|-|....|++++-|.++++||+.. .++...- ...| |++.|.+++|.|+.. .+++|+.||.
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~-s~l~G~~--~~~G----H~~SvkS~cf~~~n~~vF~tGgRDg~ 168 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT-SRLVGGR--LNLG----HTGSVKSECFMPTNPAVFCTGGRDGE 168 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeecc-ceeecce--eecc----cccccchhhhccCCCcceeeccCCCc
Confidence 47899999 999999777899999999999999987 6655431 1115 999999999999765 8899999999
Q ss_pred EEEEEcCCCe-------eeEEeccC-------------------CcCceee---eEEcCCCCCCcceEEEee----eEEE
Q 001202 331 LTVWSVSGCR-------LMSTIRQI-------------------SLSSISS---PIVKPNQDCKYEPLMSGT----SMMQ 377 (1124)
Q Consensus 331 I~vWdv~~~~-------l~~tl~~h-------------------~~~~V~s---~~~sp~~~~~~~~l~sg~----~i~~ 377 (1124)
|.|||..-.. +.+....| +...+.+ +.+..|. ..+++++ .+++
T Consensus 169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe----~tlaSaga~D~~iKV 244 (720)
T KOG0321|consen 169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE----STLASAGAADSTIKV 244 (720)
T ss_pred EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc----ceeeeccCCCcceEE
Confidence 9999984211 00000001 0122222 3333444 5677654 8999
Q ss_pred EeCCCCeEEEEec--------CC---cceE--EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecc
Q 001202 378 WDEYGYRLYAIEE--------GS---SERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (1124)
Q Consensus 378 W~~~~~~l~~~~~--------~~---~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~ 443 (1124)
||+...+...... -+ .-.+ +.++- |..+...|.|++|..|++..-...
T Consensus 245 WDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s------------------ 306 (720)
T KOG0321|consen 245 WDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS------------------ 306 (720)
T ss_pred EeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC------------------
Confidence 9997654332211 01 1122 23333 777777888999999987654432
Q ss_pred cc-eeeccCCCc--eEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecC--CEEEEEEEecC
Q 001202 444 LP-VSYISQNWP--VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDS 517 (1124)
Q Consensus 444 ~p-~~~~~~~~~--I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~--~~liv~~~~~~ 517 (1124)
| ..+.++... -..-..||||.++++|+.|+.+ +|.+.+-.-...--. -..+.|..++|.. ..-|+.|.
T Consensus 307 -P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~--Ght~eVt~V~w~pS~~t~v~TcS--- 380 (720)
T KOG0321|consen 307 -PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLL--GHTREVTTVRWLPSATTPVATCS--- 380 (720)
T ss_pred -chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhh--CcceEEEEEeeccccCCCceeec---
Confidence 2 222222111 1123579999999999999999 999876432111111 1234577788863 22333332
Q ss_pred CCeEEEEEeeCC
Q 001202 518 SNTYELLFYPRY 529 (1124)
Q Consensus 518 ~~~~elrly~~~ 529 (1124)
.+..+++|...
T Consensus 381 -dD~~~kiW~l~ 391 (720)
T KOG0321|consen 381 -DDFRVKIWRLS 391 (720)
T ss_pred -cCcceEEEecc
Confidence 33567888764
No 188
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.20 E-value=5.7e-10 Score=125.68 Aligned_cols=95 Identities=21% Similarity=0.424 Sum_probs=82.3
Q ss_pred CeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEc
Q 001202 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1124)
Q Consensus 258 ~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv 336 (1124)
+++ ..+|||||++||+-++||.+||||.++ ..++...+ . --|...||+|||||++|++|++|.-|.||++
T Consensus 291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mk----S----YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMK----S----YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred ccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHH----h----hccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 366 889999999999999999999999987 44443333 1 3467999999999999999999999999999
Q ss_pred CCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 337 SGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 337 ~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
..++.++.=.|| .++|+.++|.|..
T Consensus 362 ~erRVVARGqGH-kSWVs~VaFDpyt 386 (636)
T KOG2394|consen 362 EERRVVARGQGH-KSWVSVVAFDPYT 386 (636)
T ss_pred ccceEEEecccc-ccceeeEeecccc
Confidence 999999988888 8999999998753
No 189
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.19 E-value=2.5e-10 Score=118.41 Aligned_cols=269 Identities=16% Similarity=0.176 Sum_probs=158.1
Q ss_pred ceEEEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcc--eeEEEEecCCcEEEEEeCCCeEEEEEeeec
Q 001202 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGE--NLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1124)
Q Consensus 22 ~~iv~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~--~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~ 99 (1124)
...+.|-.++++++-...+.+.+|.. |.. |..-.++.+|. ++.+.--|. ..+.+...|+.|.+|++..+
T Consensus 17 v~s~~fqa~~rL~sg~~~G~V~~w~l-qt~-------r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s 87 (323)
T KOG0322|consen 17 VTSVLFQANERLMSGLSVGIVKMWVL-QTE-------RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYS 87 (323)
T ss_pred heehhhccchhhhcccccceEEEEEe-ecC-------ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCc
Confidence 44467888888877777788999999 343 33223332333 455666776 57888999999999999764
Q ss_pred Cc----eee-----------cCCCCCCC-c-ceeeEEEEe--------eeeee-----cccccceEEEEee---cCC--e
Q 001202 100 EK----SIQ-----------IGGKQPSG-L-FFIKISLVL--------NEQLP-----FAEKGLSVSNIVS---DNK--H 144 (1124)
Q Consensus 100 ~~----~~~-----------~~~~~~~~-~-~~~~~~~~~--------~~~~~-----~~~~~~~v~~i~~---d~~--~ 144 (1124)
.- .+. .....+.+ + ..++-.... .-++. -.++.++++|..- ++. .
T Consensus 88 ~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~l 167 (323)
T KOG0322|consen 88 AFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFL 167 (323)
T ss_pred ceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEE
Confidence 31 100 00000000 0 000000000 00000 1123456777552 122 2
Q ss_pred EEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEE
Q 001202 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1124)
Q Consensus 145 llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~ 224 (1124)
+++|-.+|++.. ||-.+. ...++. |. +++ .......+..+|.+++|.+..+.-+
T Consensus 168 llaGyEsghvv~--wd~S~~-~~~~~~-~~----------------~~k------v~~~~ash~qpvlsldyas~~~rGi 221 (323)
T KOG0322|consen 168 LLAGYESGHVVI--WDLSTG-DKIIQL-PQ----------------SSK------VESPNASHKQPVLSLDYASSCDRGI 221 (323)
T ss_pred EEEeccCCeEEE--EEccCC-ceeecc-cc----------------ccc------cccchhhccCcceeeeechhhcCCc
Confidence 445668998877 443332 111110 00 000 0113446788899999987666555
Q ss_pred EEecCCcEEEEEecCCceEeeeccccceecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCC
Q 001202 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (1124)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~ 303 (1124)
...++.+......++.+-.+ .. ..+....| -.+ .+.+-||++.+|+++.||.||||+..+ ...+..++ -
T Consensus 222 sgga~dkl~~~Sl~~s~gsl-q~-~~e~~lkn-pGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLk----y-- 291 (323)
T KOG0322|consen 222 SGGADDKLVMYSLNHSTGSL-QI-RKEITLKN-PGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLK----Y-- 291 (323)
T ss_pred CCCccccceeeeeccccCcc-cc-cceEEecC-CCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhh----h--
Confidence 55555555544333221100 00 00001122 334 789999999999999999999999988 66666665 3
Q ss_pred CCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcC
Q 001202 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (1124)
Q Consensus 304 ~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~ 337 (1124)
|.+.|++++||||...+|+|+.|+.|.+|++.
T Consensus 292 --Hsagvn~vAfspd~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 292 --HSAGVNAVAFSPDCELMAAASKDARISLWKLY 323 (323)
T ss_pred --hhcceeEEEeCCCCchhhhccCCceEEeeecC
Confidence 89999999999999999999999999999873
No 190
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.18 E-value=5.1e-09 Score=111.79 Aligned_cols=233 Identities=13% Similarity=0.302 Sum_probs=142.8
Q ss_pred EEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhc-ceeEEEEecCCcEEEEEeCC-------CeEEEEEe
Q 001202 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVTSS-------LYLHIFKV 96 (1124)
Q Consensus 25 v~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G-~~~~v~wSPDg~~Lav~t~d-------g~l~i~~v 96 (1124)
++|+.|-.=||+++++..+|++++ |-... ..|. ....| .++...|+ +++||..+.. +.|.|||=
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~-P~ke~--~~r~---~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCD-PFKES--ASRQ---FIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred EEEccCCceEEEEecCceEEEecC-chhhh--hhhc---cccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEec
Confidence 889999999999999999999997 62111 1111 11112 11223343 4566665433 46888981
Q ss_pred eecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCc
Q 001202 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (1124)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~ 176 (1124)
. .++ ++ +++.+. ..|.++...++++++.+. +.|.+|...........++
T Consensus 83 ~-k~~------------~i--~el~f~---------~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~e------ 131 (346)
T KOG2111|consen 83 L-KER------------CI--IELSFN---------SEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIE------ 131 (346)
T ss_pred c-cCc------------EE--EEEEec---------cceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeee------
Confidence 1 111 11 222222 257778888899888775 4567776654432221111
Q ss_pred cccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccc-----c
Q 001202 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-----D 251 (1124)
Q Consensus 177 ~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~-----~ 251 (1124)
. ....++ + +..+|..+..+.+.|. ...|.+++-|.... .
T Consensus 132 --t------------------------~~NPkG-l--C~~~~~~~k~~LafPg-------~k~GqvQi~dL~~~~~~~p~ 175 (346)
T KOG2111|consen 132 --T------------------------RSNPKG-L--CSLCPTSNKSLLAFPG-------FKTGQVQIVDLASTKPNAPS 175 (346)
T ss_pred --c------------------------ccCCCc-e--EeecCCCCceEEEcCC-------CccceEEEEEhhhcCcCCce
Confidence 0 000011 1 1122222212211121 12345565554432 2
Q ss_pred eecCCCCeE-EEEEccCCCEEEEEecCCe-EEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCC
Q 001202 252 KELGSGDAV-CASIAPEQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (1124)
Q Consensus 252 ~~~gh~~~v-~va~spdg~lLAsGs~Dgt-V~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg 329 (1124)
....|...+ |++.|-+|.++|++|..|| |||||..+ +..+..++. |. ....|.|++||||+.+||++|+.|
T Consensus 176 ~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RR---G~---d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 176 IINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRR---GV---DRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred EEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeec---CC---chheEEEEEeCCCccEEEEEcCCC
Confidence 236899999 9999999999999999998 59999988 777776652 42 345699999999999999999999
Q ss_pred cEEEEEcCCC
Q 001202 330 GLTVWSVSGC 339 (1124)
Q Consensus 330 ~I~vWdv~~~ 339 (1124)
|+-|+.+...
T Consensus 249 TlHiF~l~~~ 258 (346)
T KOG2111|consen 249 TLHIFSLRDT 258 (346)
T ss_pred eEEEEEeecC
Confidence 9999998764
No 191
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=1.1e-09 Score=117.57 Aligned_cols=191 Identities=14% Similarity=0.202 Sum_probs=124.1
Q ss_pred cEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEee-cCCeEEEEecCCcEEEEe
Q 001202 80 KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHMLLGLSDGSLYSIS 158 (1124)
Q Consensus 80 ~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-d~~~llv~t~dg~v~~~~ 158 (1124)
+.+|++-++|.+++||..++...--++++... ...+.-+.+ .+..+.+++.||+|+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~--------------------~N~vrf~~~ds~h~v~s~ssDG~Vr~-- 98 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPAT--------------------TNGVRFISCDSPHGVISCSSDGTVRL-- 98 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCc--------------------ccceEEecCCCCCeeEEeccCCeEEE--
Confidence 67899999999999999875421111111111 111222222 3467888999999998
Q ss_pred ccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCC-ceEEEEEecCCcceEEEEecCCcEEEEEe
Q 001202 159 WKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPIS-SAIIWLELCLPMRLLFVLYSNGQLMSCSV 237 (1124)
Q Consensus 159 Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~-~~I~~i~~s~~~~~~~~~s~dG~~~~~~~ 237 (1124)
||........ ++.+..+. .+.. +++....+++++++.
T Consensus 99 wD~Rs~~e~a--------------------------------~~~~~~~~~~~f~----------~ld~nck~~ii~~Gt 136 (376)
T KOG1188|consen 99 WDIRSQAESA--------------------------------RISWTQQSGTPFI----------CLDLNCKKNIIACGT 136 (376)
T ss_pred EEeecchhhh--------------------------------heeccCCCCCcce----------EeeccCcCCeEEecc
Confidence 6644332210 00111111 1222 333334667777665
Q ss_pred c----CCceEeeecccccee-----cCCCCeE-EEEEccC-CCEEEEEecCCeEEEEEcCCCCc---eeEEEeeccCCCC
Q 001202 238 S----KKGLKLAEFIKIDKE-----LGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESAS---LIRTVSLYDWGYS 303 (1124)
Q Consensus 238 ~----d~~i~~wd~~~~~~~-----~gh~~~v-~va~spd-g~lLAsGs~DgtV~vwd~~~~~~---~~~~l~~~~~g~~ 303 (1124)
. +-.+.+||....++. ..|.+-| ++.|+|+ -.+|++||.||-|.|||+..... +..++.
T Consensus 137 E~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN------- 209 (376)
T KOG1188|consen 137 ELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN------- 209 (376)
T ss_pred ccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-------
Confidence 3 455778998876552 4688877 9999995 57899999999999999976432 233333
Q ss_pred CCCCCCeEEEEECCCCC-EEEEEECCCcEEEEEcCCCeeeE
Q 001202 304 MDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMS 343 (1124)
Q Consensus 304 ~~h~g~V~~lawSPDG~-~Lasgs~Dg~I~vWdv~~~~l~~ 343 (1124)
|...|.++.|..++. .|.+-+...+.++|++..+.+..
T Consensus 210 --~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 210 --HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred --ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence 667799999999983 67778888999999998776443
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.16 E-value=1.2e-08 Score=117.65 Aligned_cols=240 Identities=13% Similarity=0.116 Sum_probs=139.7
Q ss_pred EEEEecCCcEEEEEe-cCCceEeeecc-ccce--e--cCCC-CeEEEEEccCCCEEEEEec-CCeEEEEEcCCCCceeEE
Q 001202 223 LFVLYSNGQLMSCSV-SKKGLKLAEFI-KIDK--E--LGSG-DAVCASIAPEQQILAVGTR-RGVVELYDLAESASLIRT 294 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~-~d~~i~~wd~~-~~~~--~--~gh~-~~v~va~spdg~lLAsGs~-DgtV~vwd~~~~~~~~~~ 294 (1124)
.++++|||+.++++. .++.+..|+.. +++. . .... .+..++++|+++++.+++. ++.|.+|++++.+.....
T Consensus 39 ~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~ 118 (330)
T PRK11028 39 PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP 118 (330)
T ss_pred cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc
Confidence 345667777665543 45667667654 2211 1 1112 3348999999998887764 889999999753432221
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCCCEEEEE-ECCCcEEEEEcCC-CeeeE----EeccCCcCceeeeEEcCCCCCCcce
Q 001202 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSVSG-CRLMS----TIRQISLSSISSPIVKPNQDCKYEP 368 (1124)
Q Consensus 295 l~~~~~g~~~~h~g~V~~lawSPDG~~Lasg-s~Dg~I~vWdv~~-~~l~~----tl~~h~~~~V~s~~~sp~~~~~~~~ 368 (1124)
.... . +.....+++++|||+++.++ ..++.|.+||+.+ +.+.. ............++|+|++ +.
T Consensus 119 ~~~~--~----~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg----~~ 188 (330)
T PRK11028 119 IQII--E----GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQ----QY 188 (330)
T ss_pred eeec--c----CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCC----CE
Confidence 2110 1 22345778999999988554 4569999999976 32211 1111112335678999998 55
Q ss_pred EEEe----eeEEEEeCC--CCeE--EEEecCC------cce--EEEEec-cceEEeec-cCCceeeeEeeecCCeEEEee
Q 001202 369 LMSG----TSMMQWDEY--GYRL--YAIEEGS------SER--VLIFSF-GKCCLNRG-VSGMTYARQVIYGEDRLLVVQ 430 (1124)
Q Consensus 369 l~sg----~~i~~W~~~--~~~l--~~~~~~~------~~~--v~~~s~-~k~~~s~s-~d~~v~~w~l~~~~~~l~l~~ 430 (1124)
+... .++.+|+.+ ++++ +...... ... -+.+++ ++.+.+++ .++++.+|++......+.+..
T Consensus 189 lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~ 268 (330)
T PRK11028 189 AYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG 268 (330)
T ss_pred EEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE
Confidence 5332 288888876 2333 2222111 111 145666 67666664 467888888754433211110
Q ss_pred cCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcC-CCeE-EEEcC--CCcEEEec
Q 001202 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIR--QKKWRVFG 489 (1124)
Q Consensus 431 ~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~-dG~v-lwd~~--sg~wk~f~ 489 (1124)
. ++ .+ ...+.++++|||++|+++++ ++++ +|++. ++.++..+
T Consensus 269 ~------------~~---~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 269 H------------QP---TE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred E------------Ee---cc--ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 0 00 11 12346899999999999886 7888 99774 55555443
No 193
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=1e-09 Score=118.67 Aligned_cols=248 Identities=10% Similarity=0.057 Sum_probs=168.1
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCcee---EEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCC
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLI---RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~---~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg 329 (1124)
.+|.++| .+.||+++++||+|+.|..++||+++. .-.. +.+.+... .|..-|.|++|.-..+.+.+|..++
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de-~~~~k~~KPI~~~~~----~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDE-LMVRKTPKPIGVMEH----PHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHH-HHhhcCCCCceeccC----ccccceEEEEEccCCeeEecCCCcc
Confidence 6899999 999999999999999999999999875 2111 11122111 2668899999999999999999999
Q ss_pred cEEEEEcCCCeeeEEeccC-CcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCC----eEEEEecCCcceE--EEE
Q 001202 330 GLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSSERV--LIF 399 (1124)
Q Consensus 330 ~I~vWdv~~~~l~~tl~~h-~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~----~l~~~~~~~~~~v--~~~ 399 (1124)
+|..-|+.+.+.+..+... ....|..+..+|.+ +.+++.+ .+.+|+.... .++..... .... ..|
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D----N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~-~~~F~t~~F 202 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD----NTLIVVTRAKLVSFIDNRDRQNPISLVLPANS-GKNFYTAEF 202 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCC----ceEEEEecCceEEEEeccCCCCCCceeeecCC-Cccceeeee
Confidence 9999999999888777542 23478999999986 6666544 7788987643 33433221 2222 455
Q ss_pred ec--cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-
Q 001202 400 SF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (1124)
Q Consensus 400 s~--~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v- 476 (1124)
.+ -..+++.+..+.+.+|+.......++-+.+. ..+|+ .+-.-.++.|+|+|..+.+--+....
T Consensus 203 ~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~---------~~L~~----~~~~~M~~~~~~~G~Q~msiRR~~~P~ 269 (609)
T KOG4227|consen 203 HPETPALILVNSETGGPNVFDRRMQARPVYQRSMF---------KGLPQ----ENTEWMGSLWSPSGNQFMSIRRGKCPL 269 (609)
T ss_pred cCCCceeEEeccccCCCCceeeccccchHHhhhcc---------ccCcc----cchhhhheeeCCCCCeehhhhccCCCE
Confidence 55 4566777777888899976654433222110 00111 11122457899999988766555555
Q ss_pred EEEcCCCcEEEecCc-CceeeeE---EEEEEecCCEEEEEEEecCCCeEEEEEeeC
Q 001202 477 LYDIRQKKWRVFGDI-TQEQKIQ---SKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 477 lwd~~sg~wk~f~~~-~~e~~~~---v~gl~W~~~~liv~~~~~~~~~~elrly~~ 528 (1124)
+||+.+.+..+|.-. .+..-+. +..+++.+++-|+.+ +..+.|.+|..
T Consensus 270 ~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tG----SD~~~i~~Wkl 321 (609)
T KOG4227|consen 270 YFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATG----SDHWGIHIWKL 321 (609)
T ss_pred EeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeecc----CcccceEEEec
Confidence 999999998888644 3322222 347888888887643 33456777744
No 194
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=4.4e-09 Score=126.39 Aligned_cols=274 Identities=17% Similarity=0.195 Sum_probs=170.9
Q ss_pred ceEEEEeeCCeEEEEEcC-CcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEe--cCCcEEEEEeCCCeEEEEEeee
Q 001202 22 QQIIYFKVNNGLLLIASP-CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWS--PDTKLIAVVTSSLYLHIFKVQI 98 (1124)
Q Consensus 22 ~~iv~fS~dg~llA~~~~-~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wS--PDg~~Lav~t~dg~l~i~~v~~ 98 (1124)
..++.|.|=...++++.+ ..|.|||.. .+..+..+.-..- -.-.+..+++- -|..++.++++||.|+||+--.
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e-~~~~l~~F~n~~~---~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWE-KGRLLNGFDNGAF---PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecc-cCceeccccCCCC---CCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 456778887777888775 589999996 4444444432210 11234556653 3667899999999999997532
Q ss_pred cC-ceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCcc
Q 001202 99 TE-KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (1124)
Q Consensus 99 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~ 177 (1124)
.. ++ + .+-+.-..++..++...+.+-+..+.....+++++++-..|++ ||.+.+...
T Consensus 1143 ~~~~~-------~---eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRI--WDa~~E~~~---------- 1200 (1387)
T KOG1517|consen 1143 DKWKK-------P---ELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRI--WDAHKEQVV---------- 1200 (1387)
T ss_pred cccCC-------c---eeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEE--EecccceeE----------
Confidence 21 10 0 0111111223333333334456666666777777666555655 776544321
Q ss_pred ccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce-----
Q 001202 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK----- 252 (1124)
Q Consensus 178 ~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~----- 252 (1124)
..+|+ +....|+.+.-+ ...|.+++.|..||.++++|...+..
T Consensus 1201 --~diP~---------------------~s~t~vTaLS~~---------~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1201 --ADIPY---------------------GSSTLVTALSAD---------LVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred --eeccc---------------------CCCccceeeccc---------ccCCceEEEeecCCceEEeecccCCccccce
Confidence 22222 223344444332 13488899999999999998765432
Q ss_pred -ecCCCCe--E-EEEEccCCCE-EEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCC--C-CeEEEEECCCCCEEEE
Q 001202 253 -ELGSGDA--V-CASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT--G-PVSCIAWTPDNSAFAV 324 (1124)
Q Consensus 253 -~~gh~~~--v-~va~spdg~l-LAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~--g-~V~~lawSPDG~~Las 324 (1124)
+..|++. | .+++.++|-- |++|+.||.|++||+... .....+... .|. | .++++..+++...+|+
T Consensus 1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e~~~~iv------~~~~yGs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKETFLTIV------AHWEYGSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-cccccceee------eccccCccceeeeeccCCCeeee
Confidence 3567776 7 9999997654 999999999999999872 222212111 122 4 4899999999999999
Q ss_pred EECCCcEEEEEcCCCeeeEEeccC------CcCceeeeEEcCCC
Q 001202 325 GWKSRGLTVWSVSGCRLMSTIRQI------SLSSISSPIVKPNQ 362 (1124)
Q Consensus 325 gs~Dg~I~vWdv~~~~l~~tl~~h------~~~~V~s~~~sp~~ 362 (1124)
|+. +.|+||++.|.++ ..++.+ ....+++++|||..
T Consensus 1322 Gs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1322 GSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred cCc-ceEEEEecChhhh-cccccCcccccCcCCCcceeeecchh
Confidence 999 9999999988653 233221 12345677777764
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.14 E-value=3.7e-08 Score=107.18 Aligned_cols=128 Identities=19% Similarity=0.241 Sum_probs=95.8
Q ss_pred eEeeecccccee------cCCCCeE-EEEEccCCCEEEEE--ecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEE
Q 001202 242 LKLAEFIKIDKE------LGSGDAV-CASIAPEQQILAVG--TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC 312 (1124)
Q Consensus 242 i~~wd~~~~~~~------~gh~~~v-~va~spdg~lLAsG--s~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~ 312 (1124)
|-++|..+-+.+ ..+...+ .+++|+.+.++|-- ...|.|.|||+.+ -+...++. +|.|++.|
T Consensus 108 IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~--------aH~~~lAa 178 (391)
T KOG2110|consen 108 IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTIN--------AHKGPLAA 178 (391)
T ss_pred EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEE--------ecCCceeE
Confidence 666666544332 2445556 66777778898863 3468999999987 56566665 39999999
Q ss_pred EEECCCCCEEEEEECCCc-EEEEEcCCCeeeEEeccC-CcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCC
Q 001202 313 IAWTPDNSAFAVGWKSRG-LTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 382 (1124)
Q Consensus 313 lawSPDG~~Lasgs~Dg~-I~vWdv~~~~l~~tl~~h-~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~ 382 (1124)
++|+|||..||||++.|+ |||+++..|+.+..|+.. --..+.+++|+|+. +++...+ ++.++-.+.
T Consensus 179 lafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds----~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 179 LAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS----QFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC----CeEEEecCCCeEEEEEecc
Confidence 999999999999999998 599999999999999753 23567899999998 6665433 666665543
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.12 E-value=3.2e-09 Score=126.60 Aligned_cols=263 Identities=14% Similarity=0.135 Sum_probs=161.1
Q ss_pred CCCCceEEEEeeCCe-EEEEEc-CCcEEEEecCCCceeE-EEEeeChHHHhhhcceeEEEEecCCcE--EEEEeCCCeEE
Q 001202 18 CPSSQQIIYFKVNNG-LLLIAS-PCHIELWSSSQHKVRL-GKYKRDSESVQREGENLQAVWSPDTKL--IAVVTSSLYLH 92 (1124)
Q Consensus 18 ~~~~~~iv~fS~dg~-llA~~~-~~~l~IW~~~~~~~~l-~~~~r~~~sl~~~G~~~~v~wSPDg~~--Lav~t~dg~l~ 92 (1124)
|+++..++.|+|... ++|.+. .++|.+||.++++.++ ...... ...+-.+++.+.|-++-.. ++++++||.|.
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~--~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL--EVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccc--cccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 345566788898854 566555 5789999997544421 111111 1123467789999765554 99999999999
Q ss_pred EEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEe---ecCCeEEEEecCCcEEEEeccCccccceee
Q 001202 93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV---SDNKHMLLGLSDGSLYSISWKGEFYGAFEL 169 (1124)
Q Consensus 93 i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~---~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l 169 (1124)
.|++..-..+.. ... ..... . .+. . ......++++. .+...+++||..|.|....+.+.......
T Consensus 319 ~W~~~~l~~P~e----~~~---~~~~~-~-~~~-~-~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~- 386 (555)
T KOG1587|consen 319 SWDTDMLSLPVE----GLL---LESKK-H-KGQ-Q-SSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV- 386 (555)
T ss_pred eeeccccccchh----hcc---ccccc-c-ccc-c-cccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc-
Confidence 997753221100 000 00000 0 000 0 00111222222 35678999999999988666554322100
Q ss_pred ccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecc-
Q 001202 170 VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI- 248 (1124)
Q Consensus 170 ~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~- 248 (1124)
.|.+ ......+.++|..+.++|... .++..+.|-++++|...
T Consensus 387 -------------~~~~--------------~~~~~~h~g~v~~v~~nPF~~----------k~fls~gDW~vriWs~~~ 429 (555)
T KOG1587|consen 387 -------------SYKG--------------HSTFITHIGPVYAVSRNPFYP----------KNFLSVGDWTVRIWSEDV 429 (555)
T ss_pred -------------cccc--------------cccccccCcceEeeecCCCcc----------ceeeeeccceeEeccccC
Confidence 0000 002345678888888886643 33334448899999765
Q ss_pred cccee---cCCCCeE-EEEEccCC-CEEEEEecCCeEEEEEcCCCC-ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEE
Q 001202 249 KIDKE---LGSGDAV-CASIAPEQ-QILAVGTRRGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF 322 (1124)
Q Consensus 249 ~~~~~---~gh~~~v-~va~spdg-~lLAsGs~DgtV~vwd~~~~~-~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~L 322 (1124)
....+ ..+.+.+ +++|||-. ..+|++..||.+.+||+.... ..+.+.+ - +....+.+.|+++|+.|
T Consensus 430 ~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~----~----~~~~l~~~~~s~~g~~l 501 (555)
T KOG1587|consen 430 IASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK----V----CSPALTRVRWSPNGKLL 501 (555)
T ss_pred CCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc----c----cccccceeecCCCCcEE
Confidence 22221 4566767 99999964 678999999999999997521 2222222 1 34556788999999999
Q ss_pred EEEECCCcEEEEEcCCC
Q 001202 323 AVGWKSRGLTVWSVSGC 339 (1124)
Q Consensus 323 asgs~Dg~I~vWdv~~~ 339 (1124)
+.|...|++.+|++...
T Consensus 502 avGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 502 AVGDANGTTHILKLSES 518 (555)
T ss_pred EEecCCCcEEEEEcCch
Confidence 99999999999999643
No 197
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=3.6e-09 Score=126.33 Aligned_cols=208 Identities=13% Similarity=0.142 Sum_probs=131.3
Q ss_pred eEEEEecCCcEEEEEecC---CceEeeeccccce--ecCCCCeE-EEEEccCCCEEEEEe-cCCeEEEEEcCCCCceeEE
Q 001202 222 LLFVLYSNGQLMSCSVSK---KGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAVGT-RRGVVELYDLAESASLIRT 294 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d---~~i~~wd~~~~~~--~~gh~~~v-~va~spdg~lLAsGs-~DgtV~vwd~~~~~~~~~~ 294 (1124)
....++|||+.++..+.+ ..+.+||..+++. +....... +++|||||+.||+++ .+|.+.||.++..+.....
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~ 286 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ 286 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe
Confidence 445666888877776533 3588898876542 22112223 789999999988865 6888777755432333444
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCCCEEEEEE-CCCcEEEEEcCCC-eeeEEeccCCcCceeeeEEcCCCCCCcceEEEe
Q 001202 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (1124)
Q Consensus 295 l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs-~Dg~I~vWdv~~~-~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg 372 (1124)
+. + +.+.+.+.+|||||+.|+.++ .+|...||++... .....+ ++ .. .++.|+|++ +.++..
T Consensus 287 lt----~----~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~-~~--~~~~~SpDG----~~ia~~ 350 (429)
T PRK01742 287 LT----S----GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG-RG--YSAQISADG----KTLVMI 350 (429)
T ss_pred ec----c----CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC-CC--CCccCCCCC----CEEEEE
Confidence 44 2 566688899999999877655 5788899987422 112222 32 22 457799998 655433
Q ss_pred e--eEEEEeCCCCeEEEEecCCcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeec
Q 001202 373 T--SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (1124)
Q Consensus 373 ~--~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~ 449 (1124)
. .+..|+..+++...........-..+++ ++.++.++.++...+|.+...+.+ ....+.
T Consensus 351 ~~~~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~------------------~~~~l~ 412 (429)
T PRK01742 351 NGDNVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR------------------FKARLP 412 (429)
T ss_pred cCCCEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC------------------ceEEcc
Confidence 2 5667998877654433332222245677 888888888888888876432221 134444
Q ss_pred cCCCceEEEEEccC
Q 001202 450 SQNWPVQHVAASKD 463 (1124)
Q Consensus 450 ~~~~~I~~va~Spd 463 (1124)
+|.+.+...+|||-
T Consensus 413 ~~~g~~~~p~wsp~ 426 (429)
T PRK01742 413 GSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCCcccCCC
Confidence 56667777888874
No 198
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=1.7e-08 Score=103.76 Aligned_cols=239 Identities=16% Similarity=0.180 Sum_probs=150.1
Q ss_pred EEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEE
Q 001202 136 SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (1124)
Q Consensus 136 ~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~ 215 (1124)
.++++....+++|..+|.|-+++.+.-..+.. -+.++........|+++|.++.
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa--------------------------~~~gk~~iv~eqahdgpiy~~~ 69 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA--------------------------EPPGKLKIVPEQAHDGPIYYLA 69 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhcccc--------------------------CCCCCcceeeccccCCCeeeee
Confidence 35667778899999999998876553221110 0112222334467889998888
Q ss_pred ecCCcceEEEEecCCcEEEEEec-----CCceEeeecccccee-cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCC
Q 001202 216 LCLPMRLLFVLYSNGQLMSCSVS-----KKGLKLAEFIKIDKE-LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES 288 (1124)
Q Consensus 216 ~s~~~~~~~~~s~dG~~~~~~~~-----d~~i~~wd~~~~~~~-~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~ 288 (1124)
|..+. +....||.+...--+ ..+-++|....+... .-.-..+ ++.+.|+..-+.+++-|+.+.-||+++
T Consensus 70 f~d~~---Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~- 145 (325)
T KOG0649|consen 70 FHDDF---LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED- 145 (325)
T ss_pred eehhh---eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC-
Confidence 87321 222233443332111 122233333322111 0011234 778888876666777899999999998
Q ss_pred CceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCc---------CceeeeEEc
Q 001202 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL---------SSISSPIVK 359 (1124)
Q Consensus 289 ~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~---------~~V~s~~~s 359 (1124)
++..++++ | |+..|.++.-......+.||++||++||||..+++++.++.-... ..+-+++.+
T Consensus 146 G~i~r~~r----G----HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ 217 (325)
T KOG0649|consen 146 GRIQREYR----G----HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN 217 (325)
T ss_pred CEEEEEEc----C----CcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc
Confidence 88888888 7 999999999855556788999999999999999999988864311 122222221
Q ss_pred CCCCCCcceEEEee--eEEEEeCCCCeEEEEecCCcceEEEEec-cceEEeeccCCceeeeEe
Q 001202 360 PNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQV 419 (1124)
Q Consensus 360 p~~~~~~~~l~sg~--~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l 419 (1124)
. ..++.|. ..-+|+....+...+..- ..++....| .+.+++++..+.+..|.+
T Consensus 218 --e----dWlvCGgGp~lslwhLrsse~t~vfpi-pa~v~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 218 --E----DWLVCGGGPKLSLWHLRSSESTCVFPI-PARVHLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred --C----ceEEecCCCceeEEeccCCCceEEEec-ccceeEeeeecceEEEeccccceeeeee
Confidence 1 4455544 778899887766555432 334555566 667788887777777764
No 199
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.09 E-value=9.5e-11 Score=137.20 Aligned_cols=214 Identities=18% Similarity=0.257 Sum_probs=157.9
Q ss_pred ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcE
Q 001202 253 ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (1124)
Q Consensus 253 ~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I 331 (1124)
+.||..+| |+.|...|++|.+|+.|..|+||.+.+ +.++.... | |.|.++.++.+....++|+++.|..|
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et-~~~lAs~r----G----hs~ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET-ARCLASCR----G----HSGDITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccc-hhhhccCC----C----CccccchhccchhhhhhhhcccCceE
Confidence 47999999 999999999999999999999999887 77777666 6 99999999999999999999999999
Q ss_pred EEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEe--eeEEEEeCCCCeEEEEec----CCcceEEEEec---c
Q 001202 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEE----GSSERVLIFSF---G 402 (1124)
Q Consensus 332 ~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg--~~i~~W~~~~~~l~~~~~----~~~~~v~~~s~---~ 402 (1124)
+||-+..+.++..|.|| ++.|++++|+|-. .++ .++.+|+..-.-+..+.. .....+..+-+ +
T Consensus 257 rvWrl~~~~pvsvLrgh-tgavtaiafsP~~-------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGH-TGAVTAIAFSPRA-------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred EEEecCCCchHHHHhcc-ccceeeeccCccc-------cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccc
Confidence 99999999999999999 8999999999975 122 288899987111111100 01122333333 5
Q ss_pred ceEEeeccCCceeeeEeee---cCCeEEEee-cCCCccc-----------eeee--cccceeeccCCCceEEEEEccCCC
Q 001202 403 KCCLNRGVSGMTYARQVIY---GEDRLLVVQ-SEDTDEL-----------KILH--LNLPVSYISQNWPVQHVAASKDGM 465 (1124)
Q Consensus 403 k~~~s~s~d~~v~~w~l~~---~~~~l~l~~-~~~~~~~-----------~w~~--~~~p~~~~~~~~~I~~va~SpdG~ 465 (1124)
....|++.|+....|...+ .+..+..++ ..+.+.. .|.. .++.....+|..++..+.++|-..
T Consensus 329 ~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ 408 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNP 408 (1113)
T ss_pred cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCc
Confidence 6678889898888776432 223333333 3232211 2321 233345567888999999999776
Q ss_pred EEE-EEcCCCeE-EEEcCCC
Q 001202 466 FLA-VAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 466 ~lA-vag~dG~v-lwd~~sg 483 (1124)
.++ ++|.||.. +||+-.|
T Consensus 409 ri~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 409 RIAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred HhhhhccCCCceEeeecccC
Confidence 665 89999998 9998655
No 200
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.08 E-value=2.6e-09 Score=119.99 Aligned_cols=166 Identities=17% Similarity=0.201 Sum_probs=109.7
Q ss_pred CEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccC
Q 001202 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI 348 (1124)
Q Consensus 269 ~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h 348 (1124)
..++.++.||.+.+-+-. ++..+.+. +|.|.|.|-.|+|||.-|.++++||.|++|+-.| .+..++.+.
T Consensus 76 d~~~i~s~DGkf~il~k~--~rVE~sv~--------AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRStl~Q~ 144 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS--ARVERSIS--------AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRSTVVQN 144 (737)
T ss_pred ceEEEEcCCceEEEeccc--chhhhhhh--------hhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHHHHhhc
Confidence 468888999998886532 33333333 4999999999999999999999999999999765 455666665
Q ss_pred CcCceeeeEEcCCCCCCcceEEE-eeeEEEEeCCCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCC
Q 001202 349 SLSSISSPIVKPNQDCKYEPLMS-GTSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGED 424 (1124)
Q Consensus 349 ~~~~V~s~~~sp~~~~~~~~l~s-g~~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~ 424 (1124)
..+|.+++|.|+.. ..+.+ |..+.+=......-....+.|++-|++++. ...++||+.|-..++||. +|..
T Consensus 145 -~~~v~c~~W~p~S~---~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~ 219 (737)
T KOG1524|consen 145 -EESIRCARWAPNSN---SIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGAN 219 (737)
T ss_pred -CceeEEEEECCCCC---ceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcc
Confidence 56799999999862 12221 111111111111112223467777766666 667899999999999993 2222
Q ss_pred eEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEc
Q 001202 425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG 471 (1124)
Q Consensus 425 ~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag 471 (1124)
..+-..|..||++++|.|| +.+++++
T Consensus 220 --------------------Lf~S~~~ey~ITSva~npd-~~~~v~S 245 (737)
T KOG1524|consen 220 --------------------LFTSAAEEYAITSVAFNPE-KDYLLWS 245 (737)
T ss_pred --------------------cccCChhccceeeeeeccc-cceeeee
Confidence 1223346667777777777 5555554
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.07 E-value=3.4e-08 Score=107.52 Aligned_cols=231 Identities=16% Similarity=0.234 Sum_probs=149.5
Q ss_pred EEEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcc-eeEEEEecCCcEEEEEeCCC--eEEEEEeeecC
Q 001202 24 IIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGE-NLQAVWSPDTKLIAVVTSSL--YLHIFKVQITE 100 (1124)
Q Consensus 24 iv~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~-~~~v~wSPDg~~Lav~t~dg--~l~i~~v~~~~ 100 (1124)
...|+.|..+|++++.+..+++..+ |-.+.. +....|. +....|| +..+|+.+.+. .+++++...+.
T Consensus 10 ~~~~Nqd~~~lsvGs~~Gyk~~~~~-~~~k~~-------~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 10 FIGFNQDSTLLSVGSKDGYKIFSCS-PFEKCF-------SKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred eeeeccceeEEEccCCCceeEEecC-chHHhh-------cccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCc
Confidence 3458899999999999999999996 543311 1111222 3344565 45777776553 37777765321
Q ss_pred ceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccc
Q 001202 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1124)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~ 180 (1124)
. ++ . +.+ ..+|.++..+.++|++...+. |++++......-.. |.
T Consensus 80 ~-IC----------------e----~~f---pt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhT-----------I~ 123 (391)
T KOG2110|consen 80 T-IC----------------E----IFF---PTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHT-----------IE 123 (391)
T ss_pred e-EE----------------E----Eec---CCceEEEEEccceEEEEEccc-EEEEecccceeehh-----------hh
Confidence 1 00 0 001 114677778889999998766 77776655432110 11
Q ss_pred cccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEe--cCCceEeeecccccee---cC
Q 001202 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV--SKKGLKLAEFIKIDKE---LG 255 (1124)
Q Consensus 181 ~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~--~d~~i~~wd~~~~~~~---~g 255 (1124)
. +..+...+..+..+ +++.+++.-. +.+.+.+||..+.+.. ..
T Consensus 124 t----------------------~~~n~~gl~AlS~n----------~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~a 171 (391)
T KOG2110|consen 124 T----------------------TPPNPKGLCALSPN----------NANCYLAYPGSTTSGDVVLFDTINLQPVNTINA 171 (391)
T ss_pred c----------------------cCCCccceEeeccC----------CCCceEEecCCCCCceEEEEEcccceeeeEEEe
Confidence 1 11122223222222 2223333222 3577888988765432 68
Q ss_pred CCCeE-EEEEccCCCEEEEEecCCeE-EEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEE
Q 001202 256 SGDAV-CASIAPEQQILAVGTRRGVV-ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (1124)
Q Consensus 256 h~~~v-~va~spdg~lLAsGs~DgtV-~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~v 333 (1124)
|.+.+ |++|||+|.+||+++..||| |||.+.+ ++.+..++. |. -.-.|.+++|+||+++|++.+..++|-|
T Consensus 172 H~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRR---G~---~~~~IySL~Fs~ds~~L~~sS~TeTVHi 244 (391)
T KOG2110|consen 172 HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRR---GT---YPVSIYSLSFSPDSQFLAASSNTETVHI 244 (391)
T ss_pred cCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeC---Cc---eeeEEEEEEECCCCCeEEEecCCCeEEE
Confidence 99999 99999999999999999975 9999988 777776662 31 1234789999999999999999999999
Q ss_pred EEcCCC
Q 001202 334 WSVSGC 339 (1124)
Q Consensus 334 Wdv~~~ 339 (1124)
+.+...
T Consensus 245 FKL~~~ 250 (391)
T KOG2110|consen 245 FKLEKV 250 (391)
T ss_pred EEeccc
Confidence 988654
No 202
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.04 E-value=9.7e-09 Score=106.83 Aligned_cols=134 Identities=16% Similarity=0.210 Sum_probs=103.8
Q ss_pred EEEEecCCceEeeecccccee-------------cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCC-Cce--eEEE
Q 001202 233 MSCSVSKKGLKLAEFIKIDKE-------------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES-ASL--IRTV 295 (1124)
Q Consensus 233 ~~~~~~d~~i~~wd~~~~~~~-------------~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~-~~~--~~~l 295 (1124)
++.|..++.+.+||..++.+. ..|...| ++.+.+....=++|+.+..+..|+++.. +.+ ....
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence 445667888888988765221 4588888 9999987777788999999999999864 221 1222
Q ss_pred eeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee--
Q 001202 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (1124)
Q Consensus 296 ~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~-- 373 (1124)
.+. |. .|..+...||++.+||++.|+.||||+..+.+.+..|+.| ...|++++|+|+. +.++.++
T Consensus 248 ~lk-------np-Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH-sagvn~vAfspd~----~lmAaaskD 314 (323)
T KOG0322|consen 248 TLK-------NP-GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH-SAGVNAVAFSPDC----ELMAAASKD 314 (323)
T ss_pred Eec-------CC-CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh-hcceeEEEeCCCC----chhhhccCC
Confidence 322 22 3888999999999999999999999999999999999998 6899999999996 5666555
Q ss_pred -eEEEEe
Q 001202 374 -SMMQWD 379 (1124)
Q Consensus 374 -~i~~W~ 379 (1124)
++-+|.
T Consensus 315 ~rISLWk 321 (323)
T KOG0322|consen 315 ARISLWK 321 (323)
T ss_pred ceEEeee
Confidence 566665
No 203
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=2e-08 Score=119.81 Aligned_cols=233 Identities=13% Similarity=0.077 Sum_probs=131.8
Q ss_pred cEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeC---CCeEEEEEeeecCceeecCCCCCCCcceee
Q 001202 41 HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS---SLYLHIFKVQITEKSIQIGGKQPSGLFFIK 117 (1124)
Q Consensus 41 ~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~---dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~ 117 (1124)
.|.+||.. ...+ ....+ ..+.+...+|||||+.||..+. +..|.+|++..+.......
T Consensus 180 ~l~~~d~d-g~~~-~~lt~------~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~----------- 240 (429)
T PRK03629 180 ELRVSDYD-GYNQ-FVVHR------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS----------- 240 (429)
T ss_pred eEEEEcCC-CCCC-EEeec------CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-----------
Confidence 68888874 2211 11111 1245678999999999997653 3468888876543211000
Q ss_pred EEEEeeeeeecccccceEEEEeecCCeEEEEe-cCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCC
Q 001202 118 ISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTS 196 (1124)
Q Consensus 118 ~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t-~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~ 196 (1124)
+.+.. ..-.+++|++.++... .+|...++.|+........
T Consensus 241 ----------~~~~~-~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~---------------------------- 281 (429)
T PRK03629 241 ----------FPRHN-GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ---------------------------- 281 (429)
T ss_pred ----------CCCCc-CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----------------------------
Confidence 00100 1135677888877653 4665455556644321111
Q ss_pred CCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecC-CceEee--eccccc--eecCCCCeE-EEEEccCCCE
Q 001202 197 GAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLA--EFIKID--KELGSGDAV-CASIAPEQQI 270 (1124)
Q Consensus 197 ~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d-~~i~~w--d~~~~~--~~~gh~~~v-~va~spdg~l 270 (1124)
+......+. ...++|||+.++..+++ +..++| +...++ .+..+.... +.+|+|||+.
T Consensus 282 -------lt~~~~~~~----------~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~ 344 (429)
T PRK03629 282 -------VTDGRSNNT----------EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKF 344 (429)
T ss_pred -------ccCCCCCcC----------ceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCE
Confidence 001111222 23455777766655543 344555 333322 122223334 7899999999
Q ss_pred EEEEecC---CeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCc---EEEEEcCCCeeeEE
Q 001202 271 LAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG---LTVWSVSGCRLMST 344 (1124)
Q Consensus 271 LAsGs~D---gtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~---I~vWdv~~~~l~~t 344 (1124)
||..+.+ ..|.+||+++ +. ...+. . .......+|||||+.|+.++.+++ +.++++.|+. ...
T Consensus 345 Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt----~-----~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~-~~~ 412 (429)
T PRK03629 345 MVMVSSNGGQQHIAKQDLAT-GG-VQVLT----D-----TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KAR 412 (429)
T ss_pred EEEEEccCCCceEEEEECCC-CC-eEEeC----C-----CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-eEE
Confidence 9886654 3577888876 43 33333 1 112346789999999999998875 6777876554 455
Q ss_pred eccCCcCceeeeEEcCC
Q 001202 345 IRQISLSSISSPIVKPN 361 (1124)
Q Consensus 345 l~~h~~~~V~s~~~sp~ 361 (1124)
+.+| ...+..++|+|.
T Consensus 413 l~~~-~~~~~~p~Wsp~ 428 (429)
T PRK03629 413 LPAT-DGQVKFPAWSPY 428 (429)
T ss_pred CccC-CCCcCCcccCCC
Confidence 6655 456777888763
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.03 E-value=6.3e-08 Score=118.66 Aligned_cols=217 Identities=12% Similarity=0.119 Sum_probs=129.7
Q ss_pred eEEE-EecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEE--eecCCeEEE
Q 001202 71 LQAV-WSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLL 147 (1124)
Q Consensus 71 ~~v~-wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~d~~~llv 147 (1124)
..++ -+|++..+++|++||+|++|+...-.. ++. .......+++ ...++.++ ...++.+++
T Consensus 1052 ~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~------~~~--s~rS~ltys~--------~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1052 IKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG------EGG--SARSELTYSP--------EGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred cceeecCCCCceEEEecCCceEEEeeehhhhc------Ccc--eeeeeEEEec--------cCCceEEEEeccCCCeEEE
Confidence 3444 456669999999999999999864221 111 0111122222 12234443 346789999
Q ss_pred EecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEe
Q 001202 148 GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY 227 (1124)
Q Consensus 148 ~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s 227 (1124)
+++||.|+....+-....... .. ..++......+.+.+|.....
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~-------~~---------------------~~ri~n~~~~g~vv~m~a~~~-------- 1159 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRV-------AT---------------------QVRIPNLKKDGVVVSMHAFTA-------- 1159 (1431)
T ss_pred EcCCCeEEEEEccccccccce-------ee---------------------eeecccccCCCceEEeecccc--------
Confidence 999999998776642111110 00 011223344555666644321
Q ss_pred cCCc-EEEEEecCCceEeeeccccce-e-----cCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccC
Q 001202 228 SNGQ-LMSCSVSKKGLKLAEFIKIDK-E-----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (1124)
Q Consensus 228 ~dG~-~~~~~~~d~~i~~wd~~~~~~-~-----~gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~ 300 (1124)
.++. .++.+..-+.+..||...... | ..|+-.++++++|-+.++++|+..|.+-+||+.- +.++.....
T Consensus 1160 ~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~--- 1235 (1431)
T KOG1240|consen 1160 IVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEH--- 1235 (1431)
T ss_pred cccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccC---
Confidence 1222 344444555666777654321 1 3454444999999999999999999999999986 555544431
Q ss_pred CCCCCCCCCeEEEEECC---CCCEEEEEE--CCCcEEEEEcCCCeeeEEecc
Q 001202 301 GYSMDDTGPVSCIAWTP---DNSAFAVGW--KSRGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 301 g~~~~h~g~V~~lawSP---DG~~Lasgs--~Dg~I~vWdv~~~~l~~tl~~ 347 (1124)
+ +..++..+...| .....++++ ..+.|.+|+..+|.+..++..
T Consensus 1236 P----~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1236 P----ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred c----ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEc
Confidence 2 445565555444 445555554 468899999999977777654
No 205
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=5.4e-09 Score=112.43 Aligned_cols=186 Identities=15% Similarity=0.227 Sum_probs=130.1
Q ss_pred CEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECC--CCCEEEEEECCCcEEEEEcCCCeeeEEec
Q 001202 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1124)
Q Consensus 269 ~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP--DG~~Lasgs~Dg~I~vWdv~~~~l~~tl~ 346 (1124)
..+|++..+|+|++||..+ ++.+..++ + +.+.++.++|.. .+..+.+|+.||+|++||+........+.
T Consensus 41 ~~vav~lSngsv~lyd~~t-g~~l~~fk----~----~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT-GQLLEEFK----G----PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccc-hhhhheec----C----CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee
Confidence 6799999999999999988 77787777 5 677778888876 35689999999999999998765544443
Q ss_pred --cCCcCceeeeEEcCCCCCCcceEEEee-------eEEEEeCCCCeE-EE-EecCCcceEEE--Eec--cceEEeeccC
Q 001202 347 --QISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYRL-YA-IEEGSSERVLI--FSF--GKCCLNRGVS 411 (1124)
Q Consensus 347 --~h~~~~V~s~~~sp~~~~~~~~l~sg~-------~i~~W~~~~~~l-~~-~~~~~~~~v~~--~s~--~k~~~s~s~d 411 (1124)
++...+..+++ ..|+.+.+..|. .+.+||++..+. +. ....|.+.|.+ |.| -..++|||.|
T Consensus 112 ~~~~~~~~f~~ld----~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 112 WTQQSGTPFICLD----LNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred ccCCCCCcceEee----ccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence 33112233332 233446666554 788999987554 33 34568888854 444 5678999999
Q ss_pred CceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCC-CEEEEEcCCCeE-EEEcCCCc
Q 001202 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 412 ~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG-~~lAvag~dG~v-lwd~~sg~ 484 (1124)
|.+.++++...++. + -......|...|-.+.|..+| +.+.+-+..++- +|+++.+.
T Consensus 188 GLvnlfD~~~d~Ee----------D-------aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 188 GLVNLFDTKKDNEE----------D-------ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred ceEEeeecCCCcch----------h-------hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 99999997665331 0 012334566679999999888 335555555555 99998876
No 206
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=4e-09 Score=118.83 Aligned_cols=162 Identities=22% Similarity=0.300 Sum_probs=115.0
Q ss_pred CCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCC
Q 001202 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (1124)
Q Consensus 305 ~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~ 381 (1124)
+|+|-|+|+.|+.||..|+||++|-.+.|||.+..+++..+...|...|.++.|-|.. +.+.++||. .+++++..
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t--nnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT--NNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC--CCeEEEeccCcceEEEEecc
Confidence 3999999999999999999999999999999999999999887669999999999864 347788876 78888876
Q ss_pred CCe----------EEEEecCCcceE--EEEec-c-ceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccce-
Q 001202 382 GYR----------LYAIEEGSSERV--LIFSF-G-KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV- 446 (1124)
Q Consensus 382 ~~~----------l~~~~~~~~~~v--~~~s~-~-k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~- 446 (1124)
..+ .......|..+| ++..+ + ..+.+++.||+++.+|+.....- ..+ ..+|.
T Consensus 126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c----~p~---------~~~~~~ 192 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC----NPD---------EDCPSI 192 (758)
T ss_pred cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC----Ccc---------ccccHH
Confidence 311 111122344555 23333 3 45678899999999887653220 000 00111
Q ss_pred --eeccCCCceEEEEEccC-CCEEEEEcCCCeE-EEEcC
Q 001202 447 --SYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIR 481 (1124)
Q Consensus 447 --~~~~~~~~I~~va~Spd-G~~lAvag~dG~v-lwd~~ 481 (1124)
.|...--...++.+||. -.+||+||.|-++ +||.+
T Consensus 193 l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 193 LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred HHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 11122234678999986 4689999999999 99963
No 207
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=3.8e-08 Score=106.79 Aligned_cols=248 Identities=13% Similarity=0.120 Sum_probs=149.2
Q ss_pred cCCcEEEEEecCCceEeeecccccee--cCCCC---eE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCC
Q 001202 228 SNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGD---AV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (1124)
Q Consensus 228 ~dG~~~~~~~~d~~i~~wd~~~~~~~--~gh~~---~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g 301 (1124)
...+.+.+|..++++...|+.+.+.+ ..|.+ +| .+..+|....+|+.+.+|.|.+||.......+..+-+..
T Consensus 115 ~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN-- 192 (609)
T KOG4227|consen 115 LENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN-- 192 (609)
T ss_pred cCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC--
Confidence 33444444455555555555444332 23333 77 899999999999999999999999987333333332221
Q ss_pred CCCCCCCCeEEEEECCC-CCEEEEEECCCcEEEEEcCCCee-------eEEeccCCcCceeeeEEcCCCCCCcceEEE--
Q 001202 302 YSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRL-------MSTIRQISLSSISSPIVKPNQDCKYEPLMS-- 371 (1124)
Q Consensus 302 ~~~~h~g~V~~lawSPD-G~~Lasgs~Dg~I~vWdv~~~~l-------~~tl~~h~~~~V~s~~~sp~~~~~~~~l~s-- 371 (1124)
....-.++.|.|- -..|++++..+++-|||...... ...|... ...--++.|+|+| ..+++
T Consensus 193 ----~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~-~~~~M~~~~~~~G----~Q~msiR 263 (609)
T KOG4227|consen 193 ----SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQE-NTEWMGSLWSPSG----NQFMSIR 263 (609)
T ss_pred ----CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCccc-chhhhheeeCCCC----Ceehhhh
Confidence 2234577889995 46889999999999999864321 1111111 0112356688887 44442
Q ss_pred -eeeEEEEeCCCCeEEEEecCCcc-------eEEEEec--cceEEeeccCCceeeeEeeecCCeEEEe-ecCCCcccee-
Q 001202 372 -GTSMMQWDEYGYRLYAIEEGSSE-------RVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVV-QSEDTDELKI- 439 (1124)
Q Consensus 372 -g~~i~~W~~~~~~l~~~~~~~~~-------~v~~~s~--~k~~~s~s~d~~v~~w~l~~~~~~l~l~-~~~~~~~~~w- 439 (1124)
|-.-+.++....++.+.-.+|.. .+-...| ...++||+.+-.+++|.+-...+.--.. -|.+...+.-
T Consensus 264 R~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~ 343 (609)
T KOG4227|consen 264 RGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE 343 (609)
T ss_pred ccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence 12445567666666655544432 2333444 4467889888889999875443311000 0111111100
Q ss_pred -eecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEE
Q 001202 440 -LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (1124)
Q Consensus 440 -~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk 486 (1124)
-.-.-...+.||...+.++.|+|-...|++.|-...+ +|+.....|.
T Consensus 344 ~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r~P~~ 392 (609)
T KOG4227|consen 344 IFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRLPWS 392 (609)
T ss_pred heecceeEEEecccccccceeecCCcceEeccchhhheeccccccCCcc
Confidence 0001123567999999999999999999999988888 9987655554
No 208
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.99 E-value=2.5e-08 Score=105.38 Aligned_cols=115 Identities=18% Similarity=0.270 Sum_probs=80.3
Q ss_pred CceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccceecCCCCeE-EEEEccCCCEEEEEec---CCeEEEE
Q 001202 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTR---RGVVELY 283 (1124)
Q Consensus 208 ~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v-~va~spdg~lLAsGs~---DgtV~vw 283 (1124)
.++|.+++|+|....++++. +..+..+.+||........-+...+ .+.|||+|++||+|+. .|.+.+|
T Consensus 59 ~~~I~~~~WsP~g~~favi~--------g~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~w 130 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIY--------GSMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFW 130 (194)
T ss_pred CCceEEEEECcCCCEEEEEE--------ccCCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEE
Confidence 44688888885443333322 2234578888875322222234455 8999999999999874 4779999
Q ss_pred EcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC------CCcEEEEEcCCCee
Q 001202 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCRL 341 (1124)
Q Consensus 284 d~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~------Dg~I~vWdv~~~~l 341 (1124)
|+++ .+.+.+.. |. .+..++|||||++++++.. |.+++||+..|..+
T Consensus 131 d~~~-~~~i~~~~---------~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 131 DVRK-KKKISTFE---------HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred ECCC-CEEeeccc---------cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 9986 55555443 44 3789999999999999874 78999999987643
No 209
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=4.2e-09 Score=119.80 Aligned_cols=240 Identities=13% Similarity=0.163 Sum_probs=150.4
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCC-------CceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEE
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES-------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~-------~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasg 325 (1124)
..|.+.+ .++|.|....|++|+.||++++|++.+. -+.+.++. + |.|||.|++.++.|..+.+|
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr----a----H~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR----A----HEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe----c----ccCceEEEEecCCceEEEee
Confidence 5688888 8999999999999999999999999331 13344555 4 99999999999999999999
Q ss_pred ECCCcEEEEEcCC----------CeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecC-
Q 001202 326 WKSRGLTVWSVSG----------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG- 391 (1124)
Q Consensus 326 s~Dg~I~vWdv~~----------~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~- 391 (1124)
+-||+|+.|++.. ..+..++.|| ++.|+.+++|+.. ..+++++ +++.|.+..... .+...
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Gh-tdavw~l~~s~~~----~~Llscs~DgTvr~w~~~~~~~-~~f~~~ 436 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGH-TDAVWLLALSSTK----DRLLSCSSDGTVRLWEPTEESP-CTFGEP 436 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceecc-ccceeeeeecccc----cceeeecCCceEEeeccCCcCc-cccCCc
Confidence 9999999996531 1345567788 7889999998876 5566664 999999987766 22221
Q ss_pred CcceE-EEEec--cceEEeeccCCceeeeEeee--cCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCE
Q 001202 392 SSERV-LIFSF--GKCCLNRGVSGMTYARQVIY--GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMF 466 (1124)
Q Consensus 392 ~~~~v-~~~s~--~k~~~s~s~d~~v~~w~l~~--~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~ 466 (1124)
....+ ..+++ .+... ...+.......+.. -...+.+......+ .|. ....+.-+...|.+..
T Consensus 437 ~e~g~Plsvd~~ss~~a~-~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~--------~~~----~~~~in~vVs~~~~~~ 503 (577)
T KOG0642|consen 437 KEHGYPLSVDRTSSRPAH-SLASFRFGYTSIDDMEVVSDLLIFESSASP--------GPR----RYPQINKVVSHPTADI 503 (577)
T ss_pred cccCCcceEeeccchhHh-hhhhcccccccchhhhhhhheeeccccCCC--------ccc----ccCccceEEecCCCCe
Confidence 11111 34444 11000 00011111111110 01111111111000 011 1123666778899999
Q ss_pred EEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEe--cCCEEEEEEEecCCCeEEEEEeeC
Q 001202 467 LAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 467 lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W--~~~~liv~~~~~~~~~~elrly~~ 528 (1124)
..++..|+.| ++|..+++- ++....|-. .+.+++- .+-+++.+.. +..+++|..
T Consensus 504 ~~~~hed~~Ir~~dn~~~~~-l~s~~a~~~--svtslai~~ng~~l~s~s~-----d~sv~l~kl 560 (577)
T KOG0642|consen 504 TFTAHEDRSIRFFDNKTGKI-LHSMVAHKD--SVTSLAIDPNGPYLMSGSH-----DGSVRLWKL 560 (577)
T ss_pred eEecccCCceeccccccccc-chheeeccc--eecceeecCCCceEEeecC-----Cceeehhhc
Confidence 9999999999 999888762 333333322 3445555 4556666533 346777755
No 210
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.98 E-value=3.2e-09 Score=120.94 Aligned_cols=103 Identities=23% Similarity=0.368 Sum_probs=86.3
Q ss_pred CCcEEEEEecCCceEeeecccc---------c-eecCCCCeE-EEEEccC-CCEEEEEecCCeEEEEEcCCCCceeEEEe
Q 001202 229 NGQLMSCSVSKKGLKLAEFIKI---------D-KELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVS 296 (1124)
Q Consensus 229 dG~~~~~~~~d~~i~~wd~~~~---------~-~~~gh~~~v-~va~spd-g~lLAsGs~DgtV~vwd~~~~~~~~~~l~ 296 (1124)
|...++++.+|+.|++|....+ + .+.+|.+.+ ++.|+|= ...||+++.|.+|++||+.. +.....+.
T Consensus 639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~-~~~~~~l~ 717 (1012)
T KOG1445|consen 639 DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN-AKLYSRLV 717 (1012)
T ss_pred ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh-hhhhheec
Confidence 4556778889999999976532 1 126899999 9999995 67899999999999999988 65555565
Q ss_pred eccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCe
Q 001202 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (1124)
Q Consensus 297 ~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~ 340 (1124)
| |++.|..++|||||+.+|+.+.||+++|+....+.
T Consensus 718 ----g----HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 718 ----G----HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred ----c----CcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 5 99999999999999999999999999999987653
No 211
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.98 E-value=3.6e-08 Score=104.14 Aligned_cols=98 Identities=22% Similarity=0.339 Sum_probs=77.4
Q ss_pred CCeE-EEEEccCCCEEEEE--ecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC---Cc
Q 001202 257 GDAV-CASIAPEQQILAVG--TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RG 330 (1124)
Q Consensus 257 ~~~v-~va~spdg~lLAsG--s~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D---g~ 330 (1124)
.+.| +++|+|+|+.+|+. ..++.|.+||++ +..+..+. .+.++.|.|||+|++|++|+.+ |.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~~~----------~~~~n~i~wsP~G~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFSFG----------TQPRNTISWSPDGRFLVLAGFGNLNGD 126 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEeec----------CCCceEEEECCCCCEEEEEEccCCCcE
Confidence 4457 99999999987654 467899999996 44444442 4668899999999999998754 66
Q ss_pred EEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee
Q 001202 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1124)
Q Consensus 331 I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~ 373 (1124)
+.+||+...+.+.+.... .++.++|+|+| ++++++.
T Consensus 127 l~~wd~~~~~~i~~~~~~---~~t~~~WsPdG----r~~~ta~ 162 (194)
T PF08662_consen 127 LEFWDVRKKKKISTFEHS---DATDVEWSPDG----RYLATAT 162 (194)
T ss_pred EEEEECCCCEEeeccccC---cEEEEEEcCCC----CEEEEEE
Confidence 999999998888777543 47899999999 8887665
No 212
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.98 E-value=2.9e-08 Score=118.57 Aligned_cols=231 Identities=15% Similarity=0.145 Sum_probs=153.9
Q ss_pred CCcEEEEEecCCceEeeeccccce--e-------cCCCCeE-EEEEccCC--CEEEEEecCCeEEEEEcCCCCceeEEEe
Q 001202 229 NGQLMSCSVSKKGLKLAEFIKIDK--E-------LGSGDAV-CASIAPEQ--QILAVGTRRGVVELYDLAESASLIRTVS 296 (1124)
Q Consensus 229 dG~~~~~~~~d~~i~~wd~~~~~~--~-------~gh~~~v-~va~spdg--~lLAsGs~DgtV~vwd~~~~~~~~~~l~ 296 (1124)
+..+++.|..+|.+-+||...+.. . ..|.+++ .+.|-.+- .-+++++.||.|..|+++.-......+.
T Consensus 254 ~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~ 333 (555)
T KOG1587|consen 254 DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLL 333 (555)
T ss_pred CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcc
Confidence 455666666778888898775543 1 3577777 77666554 3499999999999999876221111111
Q ss_pred e---ccCCCCCCCCCCeEEEEECC-CCCEEEEEECCCcEEEEEcCCCee--------eEEeccCCcCceeeeEEcCCCCC
Q 001202 297 L---YDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRL--------MSTIRQISLSSISSPIVKPNQDC 364 (1124)
Q Consensus 297 ~---~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I~vWdv~~~~l--------~~tl~~h~~~~V~s~~~sp~~~~ 364 (1124)
+ .+.+........+++++|.| +-..+++|.++|.|.-=+-.+... ...+..| ...|.++.++|-..
T Consensus 334 ~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h-~g~v~~v~~nPF~~- 411 (555)
T KOG1587|consen 334 LESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITH-IGPVYAVSRNPFYP- 411 (555)
T ss_pred cccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccccc-CcceEeeecCCCcc-
Confidence 0 00011111345689999988 567899999999987743333211 1222233 67899999988762
Q ss_pred CcceEEEe-e-eEEEEeCC-CCeEEEEecCCcceE--EEEeccc--eEEeeccCCceeeeEeeecCCeEEEeecCCCccc
Q 001202 365 KYEPLMSG-T-SMMQWDEY-GYRLYAIEEGSSERV--LIFSFGK--CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL 437 (1124)
Q Consensus 365 ~~~~l~sg-~-~i~~W~~~-~~~l~~~~~~~~~~v--~~~s~~k--~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~ 437 (1124)
..+.++ . ++++|.-. ....+.....+...+ +++++.+ .++++..+|.+.+||+++...+
T Consensus 412 --k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~------------ 477 (555)
T KOG1587|consen 412 --KNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE------------ 477 (555)
T ss_pred --ceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC------------
Confidence 333443 3 99999887 555555555556667 6778855 4567888999999999887653
Q ss_pred eeeecccce-eeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC
Q 001202 438 KILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 438 ~w~~~~~p~-~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s 482 (1124)
|. +..-+..+...+.++++|+.+|+|...|.+ +|++..
T Consensus 478 -------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 478 -------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred -------CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 32 222234556778899999999999999999 999854
No 213
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.94 E-value=1.5e-08 Score=114.40 Aligned_cols=123 Identities=14% Similarity=0.258 Sum_probs=93.5
Q ss_pred ceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEE
Q 001202 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYD 284 (1124)
Q Consensus 209 ~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd 284 (1124)
.++....++.....-.+|++||+++++-+.|+.+++++..+.+.. ..--+.. ||+|||||++||+|++|--|.||.
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 344444444444455677799999999999999999998775543 2223455 999999999999999999999999
Q ss_pred cCCCCceeEEEeeccCCCCCCCCCCeEEEEECC-----------------------------------CC----------
Q 001202 285 LAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-----------------------------------DN---------- 319 (1124)
Q Consensus 285 ~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP-----------------------------------DG---------- 319 (1124)
+.. .+.+..-. | |+..|+.|+|.| +|
T Consensus 361 f~e-rRVVARGq----G----HkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~ 431 (636)
T KOG2394|consen 361 FEE-RRVVARGQ----G----HKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRIN 431 (636)
T ss_pred ecc-ceEEEecc----c----cccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccccccccc
Confidence 987 55554433 4 999999999873 11
Q ss_pred ---CEEEEEECCCcEEEEEcCCCe
Q 001202 320 ---SAFAVGWKSRGLTVWSVSGCR 340 (1124)
Q Consensus 320 ---~~Lasgs~Dg~I~vWdv~~~~ 340 (1124)
.++.+.+.|..+.+||+..-.
T Consensus 432 ~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 432 SVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred ceEEEeecccccceEEEEecchhh
Confidence 467888889999999987544
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=2.6e-07 Score=100.12 Aligned_cols=256 Identities=16% Similarity=0.174 Sum_probs=144.6
Q ss_pred eEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEec
Q 001202 71 LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS 150 (1124)
Q Consensus 71 ~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~ 150 (1124)
..++|.|-=..+|+++.|..|++|+-.... .-.+ +......+.+++|.+- ....+++|+.
T Consensus 102 r~~aWhqH~~~fava~nddvVriy~ksst~-pt~L--ks~sQrnvtclawRPl-----------------saselavgCr 161 (445)
T KOG2139|consen 102 RGVAWHQHIIAFAVATNDDVVRIYDKSSTC-PTKL--KSVSQRNVTCLAWRPL-----------------SASELAVGCR 161 (445)
T ss_pred eeEeechhhhhhhhhccCcEEEEeccCCCC-Ccee--cchhhcceeEEEeccC-----------------Ccceeeeeec
Confidence 468899877788999999999999865421 1001 1111112233333321 2457888888
Q ss_pred CCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCC
Q 001202 151 DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNG 230 (1124)
Q Consensus 151 dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG 230 (1124)
.|.. + |......... ..++.+. +.-.|+ .-......|++|.+. +||
T Consensus 162 ~gIc-i--W~~s~tln~~--------r~~~~~s-~~~~qv------------l~~pgh~pVtsmqwn----------~dg 207 (445)
T KOG2139|consen 162 AGIC-I--WSDSRTLNAN--------RNIRMMS-THHLQV------------LQDPGHNPVTSMQWN----------EDG 207 (445)
T ss_pred ceeE-E--EEcCcccccc--------ccccccc-ccchhh------------eeCCCCceeeEEEEc----------CCC
Confidence 8743 3 5543221110 0111000 000110 112233678877777 778
Q ss_pred cEEEEEe-cCCceEeeecccccee----cCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCC
Q 001202 231 QLMSCSV-SKKGLKLAEFIKIDKE----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (1124)
Q Consensus 231 ~~~~~~~-~d~~i~~wd~~~~~~~----~gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~ 305 (1124)
..+++++ .+..+.+||..++.+. .+-.+..-+.|||||..+..+.-|+..++|+....-...+-.-
T Consensus 208 t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l--------- 278 (445)
T KOG2139|consen 208 TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL--------- 278 (445)
T ss_pred CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec---------
Confidence 8888776 6778999999887653 3433433889999999999999999999996544122122111
Q ss_pred CCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCC----CCCcceEEEee-eEEEEeC
Q 001202 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ----DCKYEPLMSGT-SMMQWDE 380 (1124)
Q Consensus 306 h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~----~~~~~~l~sg~-~i~~W~~ 380 (1124)
-.|.|..-.|+|+|++|.-+.. |.=+++++.-...-..+.+ ...+..+..-.|- .+..+.+..|. ..+.||+
T Consensus 279 gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~--~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDp 355 (445)
T KOG2139|consen 279 GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLR--PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDP 355 (445)
T ss_pred cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccC--cccceeeeeeccchhhhhhcCcccccCccceeeECC
Confidence 2568999999999996655443 4556676632111111110 0111111111110 01123333333 8899999
Q ss_pred CCCeEEEEecCC
Q 001202 381 YGYRLYAIEEGS 392 (1124)
Q Consensus 381 ~~~~l~~~~~~~ 392 (1124)
.|..+..+.++.
T Consensus 356 sGeyLav~fKg~ 367 (445)
T KOG2139|consen 356 SGEYLAVIFKGQ 367 (445)
T ss_pred CCCEEEEEEcCC
Confidence 999988888773
No 215
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.93 E-value=7e-08 Score=103.22 Aligned_cols=237 Identities=16% Similarity=0.165 Sum_probs=152.2
Q ss_pred EEEEecCCcEEEEEecCCceEeeecccccee------cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEE
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~------~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l 295 (1124)
+-++++|+..++++.+...+.++.....+.| ..|...+ ++.|+|....|++++.|..-.||...+++.-..++
T Consensus 15 chAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptl 94 (361)
T KOG1523|consen 15 CHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTL 94 (361)
T ss_pred eeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccce
Confidence 3444588888888888877777765554433 5688888 99999999999999999999999985546655555
Q ss_pred eeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeE---EeccCCcCceeeeEEcCCCCCCcceEEEe
Q 001202 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS---TIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (1124)
Q Consensus 296 ~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~---tl~~h~~~~V~s~~~sp~~~~~~~~l~sg 372 (1124)
.+.. +.+.+++|.|+|.++.+|+|+.-+.|.||-.++..--. .++....+.|+++.|+|++ -.++.|
T Consensus 95 vLlR------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn----VLlaaG 164 (361)
T KOG1523|consen 95 VLLR------INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN----VLLAAG 164 (361)
T ss_pred eEEE------eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc----ceeccc
Confidence 5443 78889999999999999999999999999887644321 1222225789999999997 666666
Q ss_pred e---eEEEEeCC-----C-------------CeEEEEecCCcceE--EEEec-cceEEeeccCCceeeeEeeecCCeEEE
Q 001202 373 T---SMMQWDEY-----G-------------YRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLV 428 (1124)
Q Consensus 373 ~---~i~~W~~~-----~-------------~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l 428 (1124)
+ +.++++.. . ++++.......+.+ +.|++ |..++-.+.|.++.+-+.....++
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~--- 241 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER--- 241 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh---
Confidence 6 45555321 0 11111111222334 44444 566666667766665443322221
Q ss_pred eecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC-CcEEEec
Q 001202 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ-KKWRVFG 489 (1124)
Q Consensus 429 ~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s-g~wk~f~ 489 (1124)
+.......-|.+++.|-.+ +.++.||.|... ++.... +.|+...
T Consensus 242 ----------------v~~~~~~~lP~ls~~~ise-~~vv~ag~~c~P~lf~~~~~~~l~~~~ 287 (361)
T KOG1523|consen 242 ----------------VQSVATAQLPLLSVSWISE-NSVVAAGYDCGPVLFVTDEEGGLSFAR 287 (361)
T ss_pred ----------------ccchhhccCCceeeEeecC-CceeecCCCCCceEEEeccccceeeeh
Confidence 2222222356777777533 446667777444 665543 3665443
No 216
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.92 E-value=6.8e-08 Score=103.33 Aligned_cols=235 Identities=15% Similarity=0.195 Sum_probs=156.8
Q ss_pred CeE-EEEEccCCCEEEEEecCCeEEEEEcCCCC--ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEE
Q 001202 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (1124)
Q Consensus 258 ~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~--~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vW 334 (1124)
.++ |-|||+|.+.+|++..+..|.||...... +..++++ .|.+.|+.|.|+|.+..|++|+.|+.-.||
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls--------~Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS--------EHDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh--------hhCcceeEEeecCCCCceeEccCCCCcccc
Confidence 456 99999999999999999999999987622 3445555 399999999999999999999999999999
Q ss_pred Ec-CCCeeeE--EeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEe----cCCcceEEEEec---
Q 001202 335 SV-SGCRLMS--TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE----EGSSERVLIFSF--- 401 (1124)
Q Consensus 335 dv-~~~~l~~--tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~----~~~~~~v~~~s~--- 401 (1124)
.. .++.-.- .|..+ ...++++.|+|.+ +.++.|+ .+-+|..++..-|-+. ......|..++.
T Consensus 83 ~~~~~~~WkptlvLlRi-NrAAt~V~WsP~e----nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRI-NRAATCVKWSPKE----NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred ccCCCCeeccceeEEEe-ccceeeEeecCcC----ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 99 5554222 23333 5678999999998 7777766 5566776665555433 233445655544
Q ss_pred cceEEeeccCCceeeeEeeecCCeEEEeecCCCcc-ceeee----cccceeeccCCCceEEEEEccCCCEEEEEcCCCeE
Q 001202 402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE-LKILH----LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (1124)
Q Consensus 402 ~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~-~~w~~----~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v 476 (1124)
.-.+++||.|+..+++.. ||-.-++.+. -.|.. .++...+....+.|..+.|||+|..||-.+.|+.+
T Consensus 158 nVLlaaGs~D~k~rVfSa-------yIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v 230 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSA-------YIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV 230 (361)
T ss_pred cceecccccCcceeEEEE-------eeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence 345678888988887662 1212122221 12311 12223443456679999999999999999999999
Q ss_pred -EEEcCCCcEEEecCcCceeeeEEEEEEecCC-EEEEEEE
Q 001202 477 -LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK-IIVVCNY 514 (1124)
Q Consensus 477 -lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~-~liv~~~ 514 (1124)
+=|.....-+ .....+++ ..-..+.|... .++.++|
T Consensus 231 ~~~da~~p~~~-v~~~~~~~-lP~ls~~~ise~~vv~ag~ 268 (361)
T KOG1523|consen 231 SFVDAAGPSER-VQSVATAQ-LPLLSVSWISENSVVAAGY 268 (361)
T ss_pred EEeecCCCchh-ccchhhcc-CCceeeEeecCCceeecCC
Confidence 6665544211 11222222 34556777544 4444444
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=3.5e-07 Score=109.53 Aligned_cols=196 Identities=13% Similarity=0.109 Sum_probs=117.8
Q ss_pred ecCCCCeE-EEEEccCCCEEEEEec---CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEE-EEEC
Q 001202 253 ELGSGDAV-CASIAPEQQILAVGTR---RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWK 327 (1124)
Q Consensus 253 ~~gh~~~v-~va~spdg~lLAsGs~---DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~La-sgs~ 327 (1124)
+..|...+ +.+|||||+.||..+. +..|.+||+.+ +.. ..+. . +.+.+.+.+|||||+.|+ +.+.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~~-~~l~----~----~~g~~~~~~~SPDG~~la~~~~~ 266 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQR-ELVG----N----FPGMTFAPRFSPDGRKVVMSLSQ 266 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-CcE-EEee----c----CCCcccCcEECCCCCEEEEEEec
Confidence 35666677 9999999999998764 46899999976 443 2333 2 566778899999999775 5555
Q ss_pred CCc--EEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee------eEEEEeCCCCeEEEEecCCcceE--E
Q 001202 328 SRG--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGSSERV--L 397 (1124)
Q Consensus 328 Dg~--I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~------~i~~W~~~~~~l~~~~~~~~~~v--~ 397 (1124)
++. |.+||+.++.+ ..+..+ .....++.|+|++ +.++..+ .+..|+..+++.-....+ ...+ .
T Consensus 267 ~g~~~Iy~~d~~~~~~-~~Lt~~-~~~~~~~~~spDG----~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~ 339 (435)
T PRK05137 267 GGNTDIYTMDLRSGTT-TRLTDS-PAIDTSPSYSPDG----SQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTP 339 (435)
T ss_pred CCCceEEEEECCCCce-EEccCC-CCccCceeEcCCC----CEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCe
Confidence 655 67778888765 344443 3456778999998 5544322 456677776654443322 1122 3
Q ss_pred EEec-cceEEeeccC-C--ceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCC
Q 001202 398 IFSF-GKCCLNRGVS-G--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (1124)
Q Consensus 398 ~~s~-~k~~~s~s~d-~--~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~d 473 (1124)
.+++ ++.++..+.+ + .+.++++..+.. ......+.+...+|||||++|+..+.+
T Consensus 340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~----------------------~~lt~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE----------------------RILTSGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred EECCCCCEEEEEEcCCCceEEEEEECCCCce----------------------EeccCCCCCCCCeECCCCCEEEEEEcc
Confidence 4555 6665544332 1 222233211111 011112235668999999999876543
Q ss_pred C------eE-EEEcCCCcEEE
Q 001202 474 G------LI-LYDIRQKKWRV 487 (1124)
Q Consensus 474 G------~v-lwd~~sg~wk~ 487 (1124)
+ .+ ++|+.++.-+.
T Consensus 398 ~~~~~~~~L~~~dl~g~~~~~ 418 (435)
T PRK05137 398 PGSGGAPKLYTVDLTGRNERE 418 (435)
T ss_pred CCCCCcceEEEEECCCCceEE
Confidence 2 34 66776654443
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.91 E-value=1.5e-07 Score=115.47 Aligned_cols=269 Identities=15% Similarity=0.138 Sum_probs=171.5
Q ss_pred cCCCCceEEEE-EecCCcceEEEEecCCcEEEEEecCCceEeeecccccee----------cCCCCeE-EEEEccCCCEE
Q 001202 204 KFPISSAIIWL-ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----------LGSGDAV-CASIAPEQQIL 271 (1124)
Q Consensus 204 ~~~~~~~I~~i-~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~----------~gh~~~v-~va~spdg~lL 271 (1124)
|..++.-|..+ ++++..+..++.++++.+++++++|+++|+|+...-..- .-.+..+ ++..-+.+..+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 44455556655 566666667777778899999999999999997643210 1123455 88888899999
Q ss_pred EEEecCCeEEEEEcCCCCceeE---EEeeccCCCCCCCCCCeE-EEEECC-CCC-EEEEEECCCcEEEEEcCCCeeeEEe
Q 001202 272 AVGTRRGVVELYDLAESASLIR---TVSLYDWGYSMDDTGPVS-CIAWTP-DNS-AFAVGWKSRGLTVWSVSGCRLMSTI 345 (1124)
Q Consensus 272 AsGs~DgtV~vwd~~~~~~~~~---~l~~~~~g~~~~h~g~V~-~lawSP-DG~-~Lasgs~Dg~I~vWdv~~~~l~~tl 345 (1124)
|+|+.||.|++.+++....... .....+. ...|.|. +-+|.. ++. .++.+...+.|..||+.......++
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~----~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNL----KKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccc----cCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence 9999999999999986321110 1111110 1234444 445544 345 7888888899999999887666665
Q ss_pred cc-CCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEec-CCcceE--EEEec--c--ceEE-eec-cCC
Q 001202 346 RQ-ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE-GSSERV--LIFSF--G--KCCL-NRG-VSG 412 (1124)
Q Consensus 346 ~~-h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~-~~~~~v--~~~s~--~--k~~~-s~s-~d~ 412 (1124)
+. -..+.|++++.+|.+ +.++.|. ...+||..=+.++.... ++..++ +.+.+ . ...+ +++ ..+
T Consensus 1190 k~~~~hG~vTSi~idp~~----~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWC----NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred hcCccccceeEEEecCCc----eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence 53 112479999999987 7777765 78899997665555432 223333 33333 3 2233 333 567
Q ss_pred ceeeeEeeecCCeEEEeecCCCccceeeeccccee--eccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCC
Q 001202 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS--YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 413 ~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~--~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg 483 (1124)
.+..|+...|..+..+..+.+.+.+.|.. |.. -..+.-+....++..-+..+.+||.|+.+ .||....
T Consensus 1266 evs~wn~~~g~~~~vl~~s~~~p~ls~~~---Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWASDGAPILSYAL---PSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred ceeeeecccCcceEEEEcCCCCcchhhhc---ccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 88999999887665555555555554421 211 00122223445555556688899999999 9998654
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=2.9e-07 Score=109.80 Aligned_cols=207 Identities=13% Similarity=0.114 Sum_probs=122.9
Q ss_pred cceEEEEecCCcEEEEEe---cCCceEeeeccccce--ecCCCCeE-EEEEccCCCEEEEE-ecCC--eEEEEEcCCCCc
Q 001202 220 MRLLFVLYSNGQLMSCSV---SKKGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAVG-TRRG--VVELYDLAESAS 290 (1124)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~---~d~~i~~wd~~~~~~--~~gh~~~v-~va~spdg~lLAsG-s~Dg--tV~vwd~~~~~~ 290 (1124)
......++|||+.++..+ .+..+.+|+..+++. +....+.+ ..+|||||+.||.. +.+| .|.+||+++ +.
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~ 278 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQ 278 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CC
Confidence 344566678888777544 234566777665532 22222334 78999999988865 4455 477888876 44
Q ss_pred eeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC-CcEEEE--EcCCCeeeEEeccCCcCceeeeEEcCCCCCCcc
Q 001202 291 LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVW--SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE 367 (1124)
Q Consensus 291 ~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D-g~I~vW--dv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~ 367 (1124)
.. .+. . +...+...+|||||+.|+..+.+ +...|| ++.++.. ..+... ......+.|+|++ +
T Consensus 279 ~~-~lt----~----~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~-~~~~~~~~~SpDG----~ 343 (429)
T PRK03629 279 IR-QVT----D----GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWE-GSQNQDADVSSDG----K 343 (429)
T ss_pred EE-Ecc----C----CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecC-CCCccCEEECCCC----C
Confidence 33 222 1 33457789999999998877764 455565 6666543 333332 2345678899998 5
Q ss_pred eEEEee------eEEEEeCCCCeEEEEecCCcceEEEEec-cceEEeeccCCceeeeEeee--cCCeEEEeecCCCccce
Q 001202 368 PLMSGT------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIY--GEDRLLVVQSEDTDELK 438 (1124)
Q Consensus 368 ~l~sg~------~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~--~~~~l~l~~~~~~~~~~ 438 (1124)
.++... .+..|+.++++...........-..+++ ++.++..+.++....+.+.. |..
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~-------------- 409 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF-------------- 409 (429)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC--------------
Confidence 554322 4667888877655443332222245666 77777776665533332222 222
Q ss_pred eeecccceeeccCCCceEEEEEcc
Q 001202 439 ILHLNLPVSYISQNWPVQHVAASK 462 (1124)
Q Consensus 439 w~~~~~p~~~~~~~~~I~~va~Sp 462 (1124)
+..+.+|.+.+...+|||
T Consensus 410 ------~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 ------KARLPATDGQVKFPAWSP 427 (429)
T ss_pred ------eEECccCCCCcCCcccCC
Confidence 333445666777778876
No 220
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=1.2e-07 Score=113.38 Aligned_cols=232 Identities=15% Similarity=0.107 Sum_probs=125.9
Q ss_pred cEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCC---CeEEEEEeeecCceeecCCCCCCCcceee
Q 001202 41 HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIGGKQPSGLFFIK 117 (1124)
Q Consensus 41 ~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d---g~l~i~~v~~~~~~~~~~~~~~~~~~~~~ 117 (1124)
+|.|||.. ... .....+ ..+.+....|||||+.|+..+.. ..|.+|++..+...... .
T Consensus 185 ~l~i~D~~-g~~-~~~lt~------~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~-~---------- 245 (433)
T PRK04922 185 ALQVADSD-GYN-PQTILR------SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA-S---------- 245 (433)
T ss_pred EEEEECCC-CCC-ceEeec------CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec-c----------
Confidence 58888874 221 111111 23456789999999999987743 45888888654321100 0
Q ss_pred EEEEeeeeeecccccceEEEEeecCCeEEEE-ecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCC
Q 001202 118 ISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG-LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTS 196 (1124)
Q Consensus 118 ~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~-t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~ 196 (1124)
..+ ....-.+++|++.+++. ..+|.-.++.|+........
T Consensus 246 ----------~~g-~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~---------------------------- 286 (433)
T PRK04922 246 ----------FRG-INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR---------------------------- 286 (433)
T ss_pred ----------CCC-CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE----------------------------
Confidence 000 00122466778777654 45565444555543321111
Q ss_pred CCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEec-CCceEee--eccccce--ecCCCCeE-EEEEccCCCE
Q 001202 197 GAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLA--EFIKIDK--ELGSGDAV-CASIAPEQQI 270 (1124)
Q Consensus 197 ~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~-d~~i~~w--d~~~~~~--~~gh~~~v-~va~spdg~l 270 (1124)
+..+.... ....++|||+.++..++ ++...+| +..+++. +..+.... ..+|||||+.
T Consensus 287 -------lt~~~~~~----------~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 287 -------LTNHFGID----------TEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKK 349 (433)
T ss_pred -------CccCCCCc----------cceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCE
Confidence 00111111 12345577776666553 3333343 3333321 22222333 7899999999
Q ss_pred EEEEecCC---eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC---CcEEEEEcCCCeeeEE
Q 001202 271 LAVGTRRG---VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGCRLMST 344 (1124)
Q Consensus 271 LAsGs~Dg---tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D---g~I~vWdv~~~~l~~t 344 (1124)
||..+.++ .|.+|++.+ +.. ..+. +.+.....+|+|||+.++..+.+ +.+.+++..++. ...
T Consensus 350 Ia~~~~~~~~~~I~v~d~~~-g~~-~~Lt---------~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~-~~~ 417 (433)
T PRK04922 350 IAMVHGSGGQYRIAVMDLST-GSV-RTLT---------PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV-RQR 417 (433)
T ss_pred EEEEECCCCceeEEEEECCC-CCe-EECC---------CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-eEE
Confidence 99876543 688999876 443 2332 22234567999999988877664 357777886653 444
Q ss_pred eccCCcCceeeeEEcC
Q 001202 345 IRQISLSSISSPIVKP 360 (1124)
Q Consensus 345 l~~h~~~~V~s~~~sp 360 (1124)
+..+ ...+..++|+|
T Consensus 418 l~~~-~g~~~~p~wsp 432 (433)
T PRK04922 418 LVSA-DGEVREPAWSP 432 (433)
T ss_pred cccC-CCCCCCCccCC
Confidence 4432 23455666655
No 221
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.83 E-value=7.7e-08 Score=101.44 Aligned_cols=208 Identities=13% Similarity=0.180 Sum_probs=132.2
Q ss_pred HhhhcceeEEEEecCCcEE---EEEeCCCeEEEEEeeecCceeec----CCCCCC--CcceeeEEEEeeeeeecccccce
Q 001202 64 VQREGENLQAVWSPDTKLI---AVVTSSLYLHIFKVQITEKSIQI----GGKQPS--GLFFIKISLVLNEQLPFAEKGLS 134 (1124)
Q Consensus 64 l~~~G~~~~v~wSPDg~~L---av~t~dg~l~i~~v~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 134 (1124)
+.+.-+.+.+.|.||..-. ..+|++.+||+|.+...+..... ..+... ..+++++.|.-
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne------------ 160 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNE------------ 160 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCccccccccc------------
Confidence 4455677899999998421 22345669999999865432221 111111 12333333321
Q ss_pred EEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEE
Q 001202 135 VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (1124)
Q Consensus 135 v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i 214 (1124)
.+..++.+.+-|-+..+ |+-+.+... ..+..+..|+..|.++
T Consensus 161 -----~dp~~igtSSiDTTCTi--Wdie~~~~~-------------------------------~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 161 -----VDPNLIGTSSIDTTCTI--WDIETGVSG-------------------------------TVKTQLIAHDKEVYDI 202 (364)
T ss_pred -----CCcceeEeecccCeEEE--EEEeecccc-------------------------------ceeeEEEecCcceeEE
Confidence 13455555555655554 665543211 1122466889999998
Q ss_pred EecCCcceEEEEecCCcEEEEEecCCceEeeecccccee----c--CCCCeE-EEEEccC-CCEEEEEecC-CeEEEEEc
Q 001202 215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----L--GSGDAV-CASIAPE-QQILAVGTRR-GVVELYDL 285 (1124)
Q Consensus 215 ~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~----~--gh~~~v-~va~spd-g~lLAsGs~D-gtV~vwd~ 285 (1124)
+|.... -+.+++.+.||.++++|....+.- . ....+. .++||++ -+++|+=..| ..|.|-|+
T Consensus 203 af~~~s---------~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 203 AFLKGS---------RDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI 273 (364)
T ss_pred EeccCc---------cceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence 887521 234555667777888877653221 1 113344 8899985 5677765444 57999999
Q ss_pred CCCCceeEEEeeccCCCCCCCCCCeEEEEECCC-CCEEEEEECCCcEEEEEcCC
Q 001202 286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSG 338 (1124)
Q Consensus 286 ~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPD-G~~Lasgs~Dg~I~vWdv~~ 338 (1124)
..+...+..+. + |.+.|+.++|.|. ++.|+||++|..+-+||+..
T Consensus 274 R~P~tpva~L~----~----H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 274 RVPCTPVARLR----N----HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred cCCCcceehhh----c----CcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 98777777777 5 9999999999996 56999999999999999964
No 222
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=4.7e-07 Score=103.30 Aligned_cols=130 Identities=21% Similarity=0.251 Sum_probs=97.8
Q ss_pred CCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCC-----eEEEEECCCCCEEEEEECCCc
Q 001202 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP-----VSCIAWTPDNSAFAVGWKSRG 330 (1124)
Q Consensus 257 ~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~-----V~~lawSPDG~~Lasgs~Dg~ 330 (1124)
...+ +|.+|+-..+||+|+.||.|..||..+ .+...++..... ...|.|. |++++|+-||-.+++|..+|.
T Consensus 175 ~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~-ksrv~~l~~~~~--v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~ 251 (703)
T KOG2321|consen 175 SGELNVVSINEEHGLLACGTEDGVVEFWDPRD-KSRVGTLDAASS--VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS 251 (703)
T ss_pred cccceeeeecCccceEEecccCceEEEecchh-hhhheeeecccc--cCCCccccccCcceEEEecCCceeEEeeccCCc
Confidence 3567 999999999999999999999999887 444444442211 0124444 999999999999999999999
Q ss_pred EEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee--eEEEEeCCCCeEEEEecC
Q 001202 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEG 391 (1124)
Q Consensus 331 I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l~~~~~~ 391 (1124)
+.|+|+...+.+..-.+...-++..+.|.+.+ ..+.++|.. .+++|+..+++.+.....
T Consensus 252 v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~--~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 252 VLIYDLRASKPLLVKDHGYELPIKKLDWQDTD--QQNKVVSMDKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred EEEEEcccCCceeecccCCccceeeecccccC--CCceEEecchHHhhhcccccCCceeeccc
Confidence 99999998876655444335567788887663 225566544 788999999988877654
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=7.4e-08 Score=104.29 Aligned_cols=187 Identities=22% Similarity=0.282 Sum_probs=132.8
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCC-CEEEEEECCCcEEEEEcCCC
Q 001202 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGC 339 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG-~~Lasgs~Dg~I~vWdv~~~ 339 (1124)
.++|++.---+|++..|-+|++|+-+. .+...++. . ....|+|++|.|.+ +.|++|.. ++|.+|.....
T Consensus 103 ~~aWhqH~~~fava~nddvVriy~kss--t~pt~Lks---~----sQrnvtclawRPlsaselavgCr-~gIciW~~s~t 172 (445)
T KOG2139|consen 103 GVAWHQHIIAFAVATNDDVVRIYDKSS--TCPTKLKS---V----SQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRT 172 (445)
T ss_pred eEeechhhhhhhhhccCcEEEEeccCC--CCCceecc---h----hhcceeEEEeccCCcceeeeeec-ceeEEEEcCcc
Confidence 689999777799999999999999765 22223331 0 24559999999965 57777776 68999987421
Q ss_pred ------------eeeEEeccCCcCceeeeEEcCCCCCCcceEEEee----eEEEEeCCCCeEEEEec-C-CcceEEEEec
Q 001202 340 ------------RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEE-G-SSERVLIFSF 401 (1124)
Q Consensus 340 ------------~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~----~i~~W~~~~~~l~~~~~-~-~~~~v~~~s~ 401 (1124)
.....+++.+...|+++.+.+|+ ..+++++ .+++|++.++...-... + ....++.+++
T Consensus 173 ln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dg----t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP 248 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDG----TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP 248 (445)
T ss_pred cccccccccccccchhheeCCCCceeeEEEEcCCC----CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC
Confidence 11223344345789999999998 6676655 89999999887655442 2 2233578888
Q ss_pred -cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeEEEEc
Q 001202 402 -GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 480 (1124)
Q Consensus 402 -~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~vlwd~ 480 (1124)
+..+..+..|+..++|...+.-.. ....-..+.|...+|||+|++|..+......+|++
T Consensus 249 dgd~lfaAt~davfrlw~e~q~wt~--------------------erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQENQSWTK--------------------ERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred CCCEEEEecccceeeeehhccccee--------------------cceeccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence 888888999999999975443221 11111234799999999999999887777678887
Q ss_pred C
Q 001202 481 R 481 (1124)
Q Consensus 481 ~ 481 (1124)
.
T Consensus 309 ~ 309 (445)
T KOG2139|consen 309 T 309 (445)
T ss_pred e
Confidence 4
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=6.6e-07 Score=106.82 Aligned_cols=97 Identities=24% Similarity=0.334 Sum_probs=62.9
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecC---CeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEE-EEECC
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKS 328 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~D---gtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~La-sgs~D 328 (1124)
..+.+.+ +.+|||||+.||..+.+ ..|.+||+.+ +.... +. . ..+.+.+.+|||||+.|+ +.+.+
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~~~-l~----~----~~g~~~~~~~SPDG~~la~~~~~~ 261 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRRRV-VA----N----FKGSNSAPAWSPDGRTLAVALSRD 261 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCEEE-ee----c----CCCCccceEECCCCCEEEEEEccC
Confidence 4556667 99999999999987643 3599999976 54332 22 1 335567899999999887 56778
Q ss_pred CcEEEEEc--CCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 329 RGLTVWSV--SGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 329 g~I~vWdv--~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
|...||.+ .++. ...+..+ .....++.|+|++
T Consensus 262 g~~~Iy~~d~~~~~-~~~lt~~-~~~~~~~~wSpDG 295 (427)
T PRK02889 262 GNSQIYTVNADGSG-LRRLTQS-SGIDTEPFFSPDG 295 (427)
T ss_pred CCceEEEEECCCCC-cEECCCC-CCCCcCeEEcCCC
Confidence 87777754 4443 3334332 2233445555555
No 225
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.80 E-value=6.4e-07 Score=94.64 Aligned_cols=185 Identities=12% Similarity=0.213 Sum_probs=117.0
Q ss_pred cCCCCeE-EEEEccCC-----CEEEEEecCCeEEEEEcCCCCceeE---EEeeccCCCCCCCCCCeEEEEECC-CCCEEE
Q 001202 254 LGSGDAV-CASIAPEQ-----QILAVGTRRGVVELYDLAESASLIR---TVSLYDWGYSMDDTGPVSCIAWTP-DNSAFA 323 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg-----~lLAsGs~DgtV~vwd~~~~~~~~~---~l~~~~~g~~~~h~g~V~~lawSP-DG~~La 323 (1124)
..|.-++ .+-|.|+. .+||+.+ ..+|+|.+........ .+.. .....+.+++++..|.- |-++|.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~---~kns~~~aPlTSFDWne~dp~~ig 167 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNN---NKNSEFCAPLTSFDWNEVDPNLIG 167 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhcc---CcccccCCcccccccccCCcceeE
Confidence 3676677 89999985 3677754 4899999985222111 1111 11234778999999985 778999
Q ss_pred EEECCCcEEEEEcCCCee---eEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEe
Q 001202 324 VGWKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFS 400 (1124)
Q Consensus 324 sgs~Dg~I~vWdv~~~~l---~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s 400 (1124)
+++-|-|..|||+.++.. ...|-.| ...|..++|...+. +.+
T Consensus 168 tSSiDTTCTiWdie~~~~~~vkTQLIAH-DKEV~DIaf~~~s~---~~F------------------------------- 212 (364)
T KOG0290|consen 168 TSSIDTTCTIWDIETGVSGTVKTQLIAH-DKEVYDIAFLKGSR---DVF------------------------------- 212 (364)
T ss_pred eecccCeEEEEEEeeccccceeeEEEec-CcceeEEEeccCcc---ceE-------------------------------
Confidence 999999999999988632 2233334 55666666655321 222
Q ss_pred ccceEEeeccCCceeeeEeeecCCeEEEeecCCCcc------------------------ceeeecccc----eeeccCC
Q 001202 401 FGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE------------------------LKILHLNLP----VSYISQN 452 (1124)
Q Consensus 401 ~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~------------------------~~w~~~~~p----~~~~~~~ 452 (1124)
+|.+.||+++++|+..-+...++|.+..... ...-.+..| ..+.+|.
T Consensus 213 -----ASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~ 287 (364)
T KOG0290|consen 213 -----ASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ 287 (364)
T ss_pred -----EEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCc
Confidence 3444444444444444444444443322100 001112223 3567999
Q ss_pred CceEEEEEccC-CCEEEEEcCCCeE-EEEcCCC
Q 001202 453 WPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 453 ~~I~~va~Spd-G~~lAvag~dG~v-lwd~~sg 483 (1124)
.+|+.++|.|. +.++++||.|..+ +||+.+-
T Consensus 288 a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 288 ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred ccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 99999999985 6799999999999 9999763
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.79 E-value=6.4e-06 Score=88.54 Aligned_cols=87 Identities=18% Similarity=0.341 Sum_probs=68.7
Q ss_pred CCCEEEE-EecCCeEEEEEcCCCCce--eEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCc-EEEEEcCCCeee
Q 001202 267 EQQILAV-GTRRGVVELYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG-LTVWSVSGCRLM 342 (1124)
Q Consensus 267 dg~lLAs-Gs~DgtV~vwd~~~~~~~--~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~-I~vWdv~~~~l~ 342 (1124)
...+||. |-.-|.|+|-|+.. ... ...+. +|...|.|++.+-+|..+||+|..|| |||||..+|.++
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~-~~~~~p~~I~--------AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l 217 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLAS-TKPNAPSIIN--------AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLL 217 (346)
T ss_pred CceEEEcCCCccceEEEEEhhh-cCcCCceEEE--------cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEe
Confidence 3455665 44669999999876 322 12333 49999999999999999999999998 699999999999
Q ss_pred EEeccC-CcCceeeeEEcCCC
Q 001202 343 STIRQI-SLSSISSPIVKPNQ 362 (1124)
Q Consensus 343 ~tl~~h-~~~~V~s~~~sp~~ 362 (1124)
+.++.. ....+.+++|||+.
T Consensus 218 ~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 218 QELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred eeeecCCchheEEEEEeCCCc
Confidence 999752 24578899999987
No 227
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=8e-08 Score=108.56 Aligned_cols=121 Identities=17% Similarity=0.275 Sum_probs=99.3
Q ss_pred ccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee----cCCCCeE-EEEEccC--CCEEEEEe
Q 001202 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPE--QQILAVGT 275 (1124)
Q Consensus 203 ~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~----~gh~~~v-~va~spd--g~lLAsGs 275 (1124)
.+.+|.++|.+++|+ .||.++++|++|..+.+||....+.+ .||..-| |+.|-|. .+++++|.
T Consensus 45 eL~GH~GCVN~LeWn----------~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWN----------ADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred hhccccceecceeec----------CCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc
Confidence 467899999998888 89999999999999999998765543 7999999 9999994 67899999
Q ss_pred cCCeEEEEEcCCCC------ceeEEEeeccCCCCCCCCCCeEEEEECCCC-CEEEEEECCCcEEEEEcCC
Q 001202 276 RRGVVELYDLAESA------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSG 338 (1124)
Q Consensus 276 ~DgtV~vwd~~~~~------~~~~~l~~~~~g~~~~h~g~V~~lawSPDG-~~Lasgs~Dg~I~vWdv~~ 338 (1124)
.|..|+|||++... ....+.. .|+ -|+..|..++-.|+| ..+-++++||+++-+|+..
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~--~~~---cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTR--CWS---CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred CcceEEEEecccccccccccCccchhh--hhh---hhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 99999999998511 1111111 111 389999999999999 8999999999999999975
No 228
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=2e-06 Score=98.59 Aligned_cols=99 Identities=17% Similarity=0.308 Sum_probs=77.1
Q ss_pred CCCeE-EEEEccCCCEEEE--EecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC---C
Q 001202 256 SGDAV-CASIAPEQQILAV--GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---R 329 (1124)
Q Consensus 256 h~~~v-~va~spdg~lLAs--Gs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D---g 329 (1124)
-.++| ++.|||+++-+|+ |-.=.++.+||++ +..+..+ | .|+=+++-|+|.|++|+.++-+ |
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df-----~-----egpRN~~~fnp~g~ii~lAGFGNL~G 336 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDF-----P-----EGPRNTAFFNPHGNIILLAGFGNLPG 336 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeC-----C-----CCCccceEECCCCCEEEEeecCCCCC
Confidence 36789 9999999987665 5566789999986 4444433 2 6778999999999998887754 7
Q ss_pred cEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee
Q 001202 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1124)
Q Consensus 330 ~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~ 373 (1124)
.+-|||+.+.+++.++... ..+-+.|+||| +.++++.
T Consensus 337 ~mEvwDv~n~K~i~~~~a~---~tt~~eW~PdG----e~flTAT 373 (566)
T KOG2315|consen 337 DMEVWDVPNRKLIAKFKAA---NTTVFEWSPDG----EYFLTAT 373 (566)
T ss_pred ceEEEeccchhhccccccC---CceEEEEcCCC----cEEEEEe
Confidence 8999999998888887653 45567789998 7777665
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.77 E-value=1.1e-06 Score=105.22 Aligned_cols=205 Identities=15% Similarity=0.145 Sum_probs=119.2
Q ss_pred ceEeeecccc--ceecCCCCeE-EEEEccCCCEEEEEecC---CeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEE
Q 001202 241 GLKLAEFIKI--DKELGSGDAV-CASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA 314 (1124)
Q Consensus 241 ~i~~wd~~~~--~~~~gh~~~v-~va~spdg~lLAsGs~D---gtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~la 314 (1124)
++.+||.... +.+..+...+ +.+|+|||+.||..+.+ ..|.+|++++ +... .+. . ..+...+.+
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~~-~l~----~----~~g~~~~~~ 254 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQRE-LVA----S----FRGINGAPS 254 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CCEE-Eec----c----CCCCccCce
Confidence 4556654322 2234555666 89999999999988743 4699999976 4432 222 1 344456789
Q ss_pred ECCCCCEEE-EEECCC--cEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee------eEEEEeCCCCeE
Q 001202 315 WTPDNSAFA-VGWKSR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRL 385 (1124)
Q Consensus 315 wSPDG~~La-sgs~Dg--~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~------~i~~W~~~~~~l 385 (1124)
|||||+.|+ +.+.+| .|.+||+.++... .+..+ .....+++|+|++ ..++..+ .+..++..+++.
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~-~~~~~~~~~spDG----~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNH-FGIDTEPTWAPDG----KSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccC-CCCccceEECCCC----CEEEEEECCCCCceEEEEECCCCCe
Confidence 999999775 455555 5999999887643 34443 3345678999998 5554322 345556655554
Q ss_pred EEEe-cCCcceEEEEec-cceEEeeccC-C--ceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEE
Q 001202 386 YAIE-EGSSERVLIFSF-GKCCLNRGVS-G--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA 460 (1124)
Q Consensus 386 ~~~~-~~~~~~v~~~s~-~k~~~s~s~d-~--~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~ 460 (1124)
-... .+....-..+++ ++.++..+.+ + .+.+|++..+..+ .+. +.......+|
T Consensus 329 ~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~---------------------~Lt-~~~~~~~p~~ 386 (433)
T PRK04922 329 ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR---------------------TLT-PGSLDESPSF 386 (433)
T ss_pred EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE---------------------ECC-CCCCCCCceE
Confidence 3322 221111245666 6665543322 2 3445554332221 111 1112345689
Q ss_pred ccCCCEEEEEcCC---CeE-EEEcCCC
Q 001202 461 SKDGMFLAVAGLH---GLI-LYDIRQK 483 (1124)
Q Consensus 461 SpdG~~lAvag~d---G~v-lwd~~sg 483 (1124)
||||++++.++.+ +.+ +++...+
T Consensus 387 spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 387 APNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCCCCEEEEEEecCCceEEEEEECCCC
Confidence 9999998877654 234 6666443
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.76 E-value=3.4e-05 Score=89.75 Aligned_cols=294 Identities=13% Similarity=0.103 Sum_probs=156.4
Q ss_pred EEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeEEEEEccCCCEEEEEe-cCCeEEEEEcC
Q 001202 211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGT-RRGVVELYDLA 286 (1124)
Q Consensus 211 I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v~va~spdg~lLAsGs-~DgtV~vwd~~ 286 (1124)
+..+..-......+++++||+++.+.+.|+.+.++|..+.+.. ..-.++.++++|+||+++++++ .++++.++|..
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~ 108 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE 108 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccc
Confidence 3444332233345678899999988888999999999887654 2223445999999999988775 68999999998
Q ss_pred CCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC-CcEEEEEcCCCee--eEEeccCCcCceeeeEEcCCCC
Q 001202 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQD 363 (1124)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D-g~I~vWdv~~~~l--~~tl~~h~~~~V~s~~~sp~~~ 363 (1124)
+ .+.++.+........ .....|..|.-+|.+..++..-.| +.|.+-|...... ...+.- ........|+|++
T Consensus 109 t-le~v~~I~~~~~~~~-~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~--g~~~~D~~~dpdg- 183 (369)
T PF02239_consen 109 T-LEPVKTIPTGGMPVD-GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV--GRFPHDGGFDPDG- 183 (369)
T ss_dssp T---EEEEEE--EE-TT-TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TTS-
T ss_pred c-ccceeeccccccccc-ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc--cccccccccCccc-
Confidence 8 777777664322110 134568889999999977776665 6666667655432 223322 2345567788887
Q ss_pred CCcceEEEee----eEEEEeCCCCeEEEEec-C---CcceEEEEe-ccceEEeeccCCceeeeEeeecCCeEEEeecCCC
Q 001202 364 CKYEPLMSGT----SMMQWDEYGYRLYAIEE-G---SSERVLIFS-FGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (1124)
Q Consensus 364 ~~~~~l~sg~----~i~~W~~~~~~l~~~~~-~---~~~~v~~~s-~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~ 434 (1124)
++++.+. .+.+++.+++++..... + |..++..+. ++ ...+|..........-.-+.+.
T Consensus 184 ---ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~----------~g~vw~~~~~~~~~~~~ig~~~ 250 (369)
T PF02239_consen 184 ---RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG----------FGPVWATSGLGYFAIPLIGTDP 250 (369)
T ss_dssp ---SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETT----------TEEEEEEEBSSSSEEEEEE--T
T ss_pred ---ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCC----------cceEEeeccccceecccccCCc
Confidence 6665443 77788988887765432 1 222232221 11 1112332222221111111111
Q ss_pred ----ccceeeecccceeeccCCCceEEEEEccCCCEEEEE----cCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEec
Q 001202 435 ----DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA----GLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL 505 (1124)
Q Consensus 435 ----~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAva----g~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~ 505 (1124)
+...|+.+ .+......+ ..+..+||++++.+. ...+.+ ++|..+.+-. ..........+.++.|.
T Consensus 251 v~v~d~~~wkvv---~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~--~~i~~~~~~~~~h~ef~ 324 (369)
T PF02239_consen 251 VSVHDDYAWKVV---KTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVV--KTITPGPGKRVVHMEFN 324 (369)
T ss_dssp TT-STTTBTSEE---EEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEE--E-HHHHHT--EEEEEE-
T ss_pred cccchhhcCeEE---EEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCccee--EEEeccCCCcEeccEEC
Confidence 11234433 333334445 668889999999999 444778 9999886421 11111111225677775
Q ss_pred --CCEEEEEEEecCCCeEEEEEeeCCCC
Q 001202 506 --GKIIVVCNYIDSSNTYELLFYPRYHL 531 (1124)
Q Consensus 506 --~~~liv~~~~~~~~~~elrly~~~~l 531 (1124)
++.+.++.+..++ +|.+|+...+
T Consensus 325 ~dG~~v~vS~~~~~~---~i~v~D~~Tl 349 (369)
T PF02239_consen 325 PDGKEVWVSVWDGNG---AIVVYDAKTL 349 (369)
T ss_dssp TTSSEEEEEEE--TT---EEEEEETTTT
T ss_pred CCCCEEEEEEecCCC---EEEEEECCCc
Confidence 5577776663322 8999988533
No 231
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.75 E-value=1.5e-08 Score=112.64 Aligned_cols=221 Identities=14% Similarity=0.151 Sum_probs=166.2
Q ss_pred CcceEEEEecCCcEEEEEecCCceEeeecccccee--cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEE
Q 001202 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (1124)
Q Consensus 219 ~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~--~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l 295 (1124)
.+.+.+-.+.+|+.++.++..+-+...|..+.... ......| .+.|-+..+++|++ +..-+.|||-. |..++++
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~--GtElHCl 206 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNN--GTELHCL 206 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEecCC--CcEEeeh
Confidence 34456777799999999999998888887766432 3345667 88898999999998 55688899854 6667777
Q ss_pred eeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEe---
Q 001202 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--- 372 (1124)
Q Consensus 296 ~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg--- 372 (1124)
+ ....|..+.|-|---.|++++..|.++--|+.+|+++..+... ...+..+.-+|-. ..+-.|
T Consensus 207 k---------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-~G~~~vm~qNP~N----aVih~Ghsn 272 (545)
T KOG1272|consen 207 K---------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-AGRTDVMKQNPYN----AVIHLGHSN 272 (545)
T ss_pred h---------hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-CCccchhhcCCcc----ceEEEcCCC
Confidence 7 4567999999999999999999999999999999998888754 4455555556654 333333
Q ss_pred eeEEEEeCCCCeEEEEecCCcceE--EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeec
Q 001202 373 TSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (1124)
Q Consensus 373 ~~i~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~ 449 (1124)
+++-+|++...+.++..-.|.+.| +++.. |++++|.+.|..+++||+..-.. +.++.
T Consensus 273 GtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q--------------------l~t~~ 332 (545)
T KOG1272|consen 273 GTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ--------------------LHTYR 332 (545)
T ss_pred ceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc--------------------cceee
Confidence 289999999998888777888888 55555 99999999999999999877554 33433
Q ss_pred cCCCceEEEEEccCCCEEEEEcCCCeE-EEE
Q 001202 450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (1124)
Q Consensus 450 ~~~~~I~~va~SpdG~~lAvag~dG~v-lwd 479 (1124)
. .-+...++||.-| .||.+ ....+ +|.
T Consensus 333 t-p~~a~~ls~Sqkg-lLA~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 333 T-PHPASNLSLSQKG-LLALS-YGDHVQIWK 360 (545)
T ss_pred c-CCCcccccccccc-ceeee-cCCeeeeeh
Confidence 3 3467779999766 34443 33345 774
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=1.1e-06 Score=105.05 Aligned_cols=171 Identities=15% Similarity=0.185 Sum_probs=102.9
Q ss_pred EEEecCCcEEEEEecC---CceEeeecccccee--cCCCCeE-EEEEccCCCEEEE-EecCCeEEEEEcCCCCceeEEEe
Q 001202 224 FVLYSNGQLMSCSVSK---KGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAV-GTRRGVVELYDLAESASLIRTVS 296 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d---~~i~~wd~~~~~~~--~gh~~~v-~va~spdg~lLAs-Gs~DgtV~vwd~~~~~~~~~~l~ 296 (1124)
..++|||+.++..+.+ ..+.+||..+++.. ....... +.+|||||+.||. .+.+|...||.++..+.....+.
T Consensus 201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt 280 (427)
T PRK02889 201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT 280 (427)
T ss_pred ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC
Confidence 3455888777665532 34777887766432 2233344 8899999998874 67788888887754333344333
Q ss_pred eccCCCCCCCCCCeEEEEECCCCCEEEEEEC-CCcEEEEEc--CCCeeeE-EeccCCcCceeeeEEcCCCCCCcceEEEe
Q 001202 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSV--SGCRLMS-TIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (1124)
Q Consensus 297 ~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~-Dg~I~vWdv--~~~~l~~-tl~~h~~~~V~s~~~sp~~~~~~~~l~sg 372 (1124)
. +.+.+...+|||||+.|+..+. +|...||.+ .++.... ++.+ ....++.|+|++ +.++..
T Consensus 281 ----~----~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g---~~~~~~~~SpDG----~~Ia~~ 345 (427)
T PRK02889 281 ----Q----SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG---SYNTSPRISPDG----KLLAYI 345 (427)
T ss_pred ----C----CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC---CCcCceEECCCC----CEEEEE
Confidence 1 4455667899999998886664 467777765 4443222 2222 234467899998 555432
Q ss_pred e------eEEEEeCCCCeEEEEecCCcceEEEEec-cceEEeec
Q 001202 373 T------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRG 409 (1124)
Q Consensus 373 ~------~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s 409 (1124)
. .+.+|+..+++......+....-..+++ ++.++..+
T Consensus 346 s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 346 SRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYAT 389 (427)
T ss_pred EccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEE
Confidence 2 4778888776654443322222234555 55554443
No 233
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.74 E-value=3.2e-08 Score=110.16 Aligned_cols=213 Identities=16% Similarity=0.201 Sum_probs=133.8
Q ss_pred HhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEee-cC
Q 001202 64 VQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DN 142 (1124)
Q Consensus 64 l~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-d~ 142 (1124)
+.++|++ .+.++.+|+.++.++..|+|-.+|..+.... . ++...+ .|..+.. .+
T Consensus 127 l~eFGPY-~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~--~-------------Ei~v~E---------tv~Dv~~LHn 181 (545)
T KOG1272|consen 127 LPEFGPY-HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH--F-------------EINVME---------TVRDVTFLHN 181 (545)
T ss_pred ccccCCe-eeeecCCccEEEecCCccceeeeecccceee--e-------------eeehhh---------hhhhhhhhcc
Confidence 3457876 7899999999999999999999998764311 0 000000 1111111 23
Q ss_pred CeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcce
Q 001202 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (1124)
Q Consensus 143 ~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~ 222 (1124)
+.+++......+++++=+|... ........|..++|-|.-.+
T Consensus 182 eq~~AVAQK~y~yvYD~~GtEl--------------------------------------HClk~~~~v~rLeFLPyHfL 223 (545)
T KOG1272|consen 182 EQFFAVAQKKYVYVYDNNGTEL--------------------------------------HCLKRHIRVARLEFLPYHFL 223 (545)
T ss_pred hHHHHhhhhceEEEecCCCcEE--------------------------------------eehhhcCchhhhcccchhhe
Confidence 3344444455565543332211 12233455666677655444
Q ss_pred EEEEecCCcEEEEEecCCceEeeecccccee----cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEee
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~----~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~ 297 (1124)
+++.+..| -++--|+.+++.. .+ .+.+ .+..||-...+-+|..+|+|.+|.-....-+.+.+.
T Consensus 224 L~~~~~~G----------~L~Y~DVS~GklVa~~~t~-~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc- 291 (545)
T KOG1272|consen 224 LVAASEAG----------FLKYQDVSTGKLVASIRTG-AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC- 291 (545)
T ss_pred eeecccCC----------ceEEEeechhhhhHHHHcc-CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh-
Confidence 44444444 3333444454433 22 3445 788999999999999999999999876233333343
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCC
Q 001202 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~ 361 (1124)
|.|+|.+|++.|+|+++||++.|+.++|||+.+-....++.. ....+.+++|..
T Consensus 292 --------H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sqk 345 (545)
T KOG1272|consen 292 --------HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQK 345 (545)
T ss_pred --------cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CCCccccccccc
Confidence 999999999999999999999999999999987765555544 123444445444
No 234
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.68 E-value=2.1e-06 Score=92.04 Aligned_cols=286 Identities=15% Similarity=0.234 Sum_probs=162.1
Q ss_pred eEEEEecCCcEEEEEecCCceEeeecccccee--cCCCCeE-EEEEccCCCE-EEEEecCCeEEEEEcCCCCceeEEEee
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSL 297 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~--~gh~~~v-~va~spdg~l-LAsGs~DgtV~vwd~~~~~~~~~~l~~ 297 (1124)
.++.++|+|+++++.+.- .+-+-|..+.+.. .-.-+.+ -+.|..|..+ |.....|+.|.+|++.. .+--..+.
T Consensus 12 ~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q-pew~ckId- 88 (447)
T KOG4497|consen 12 PFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ-PEWYCKID- 88 (447)
T ss_pred CceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeec-ceeEEEec-
Confidence 477889999999876643 3434444443221 0112334 7788888765 44567899999999976 33333333
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCE-EEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCC---------CCc-
Q 001202 298 YDWGYSMDDTGPVSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD---------CKY- 366 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~lawSPDG~~-Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~---------~~~- 366 (1124)
+...++.+++|||||+. |.+..-|-.|.||++.+.... +-.|-...+..++|+|++. |+.
T Consensus 89 -------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~--~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 89 -------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY--LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDY 159 (447)
T ss_pred -------cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE--EecccccCceeEEECCCCceeeeeecccHHHH
Confidence 13567899999999964 555666889999999887633 2233355678899999873 110
Q ss_pred ceEEEe---------------eeEEEEeCCCCeEEEEec-----------CCcceEEEEec-cceEEeeccCCceeeeEe
Q 001202 367 EPLMSG---------------TSMMQWDEYGYRLYAIEE-----------GSSERVLIFSF-GKCCLNRGVSGMTYARQV 419 (1124)
Q Consensus 367 ~~l~sg---------------~~i~~W~~~~~~l~~~~~-----------~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l 419 (1124)
-.+.+. .+-+-|.++|.-+.+-.+ +-.-..+.+++ ++.++.|+.|+.+++-+-
T Consensus 160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhce
Confidence 000000 044568887765544321 11112266777 788889999988876331
Q ss_pred eec-------------CCe-EEEeecC----------------CCcccee----------------eecccceeeccCCC
Q 001202 420 IYG-------------EDR-LLVVQSE----------------DTDELKI----------------LHLNLPVSYISQNW 453 (1124)
Q Consensus 420 ~~~-------------~~~-l~l~~~~----------------~~~~~~w----------------~~~~~p~~~~~~~~ 453 (1124)
.+- +.. ..++... +.....| +..+.|..+-...-
T Consensus 240 ~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~ 319 (447)
T KOG4497|consen 240 FTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKC 319 (447)
T ss_pred eeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccc
Confidence 110 000 0000000 0000011 11111222222222
Q ss_pred ceEEEEEccCCCEEEEEcCC--CeE-EEEcCCCcEEEecCcCceeeeEEEEEEecCC--EEEEEEEecCCCeEEEEEeeC
Q 001202 454 PVQHVAASKDGMFLAVAGLH--GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 454 ~I~~va~SpdG~~lAvag~d--G~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~--~liv~~~~~~~~~~elrly~~ 528 (1124)
.+--++||+|..|+|+-... ..+ +||++..+ ++....|. -.++.+.|.+. -+++| .+...+.+|..
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~--l~avLiQk--~piraf~WdP~~prL~vc-----tg~srLY~W~p 390 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK--LHAVLIQK--HPIRAFEWDPGRPRLVVC-----TGKSRLYFWAP 390 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhhh--hhhhhhhc--cceeEEEeCCCCceEEEE-----cCCceEEEEcC
Confidence 36678999999999987654 334 88987654 44333332 35888999854 55665 22234666644
No 235
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=2.6e-06 Score=102.06 Aligned_cols=170 Identities=13% Similarity=0.095 Sum_probs=102.6
Q ss_pred ceEEEEecCCcEEEEEec---CCceEeeeccccce--ecCCCCeE-EEEEccCCCEEE-EEecCCe--EEEEEcCCCCce
Q 001202 221 RLLFVLYSNGQLMSCSVS---KKGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILA-VGTRRGV--VELYDLAESASL 291 (1124)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~---d~~i~~wd~~~~~~--~~gh~~~v-~va~spdg~lLA-sGs~Dgt--V~vwd~~~~~~~ 291 (1124)
.....++|||+.++..+. +..+.+|+..+++. +..+.+.+ +.+|||||+.|| +.+.+|. |.+||+++ +.
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~-~~- 281 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS-GT- 281 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC-Cc-
Confidence 345566688887766542 35688888876643 23445555 889999999876 4556666 55556654 33
Q ss_pred eEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC-C--cEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcce
Q 001202 292 IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP 368 (1124)
Q Consensus 292 ~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D-g--~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~ 368 (1124)
...+. . +.+.....+|||||+.|+..+.. | .|.+||+.++.... +..+ ...+..+.|+|++ +.
T Consensus 282 ~~~Lt----~----~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~-~~~~~~~~~SpdG----~~ 347 (435)
T PRK05137 282 TTRLT----D----SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFG-GGRYSTPVWSPRG----DL 347 (435)
T ss_pred eEEcc----C----CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecC-CCcccCeEECCCC----CE
Confidence 33333 1 45556789999999998877743 3 57788888765433 3222 3346678899998 55
Q ss_pred EEEe------eeEEEEeCCCCeEEEEecCCcceEEEEec-cceEE
Q 001202 369 LMSG------TSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCL 406 (1124)
Q Consensus 369 l~sg------~~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~ 406 (1124)
++.. ..+.+|+..++.......+....-..+++ ++.++
T Consensus 348 ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 348 IAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIM 392 (435)
T ss_pred EEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEE
Confidence 5421 15666776655433322222112234555 55544
No 236
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.61 E-value=6e-06 Score=88.27 Aligned_cols=71 Identities=23% Similarity=0.314 Sum_probs=52.2
Q ss_pred EEeeCCeEEEEEcCCcEEEEecCCCc-eeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeec
Q 001202 26 YFKVNNGLLLIASPCHIELWSSSQHK-VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1124)
Q Consensus 26 ~fS~dg~llA~~~~~~l~IW~~~~~~-~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~ 99 (1124)
+.+.||++||++.+..|.|=..+..- ..++++.-..+ .+-.-..++||||+..||.+.+.|+|++||+...
T Consensus 4 ~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD---~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~ 75 (282)
T PF15492_consen 4 ALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKD---PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS 75 (282)
T ss_pred eecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCC---CCchheEEEECCCCcEEEEEcCCCeEEEEecccc
Confidence 46899999999999999998885211 12233322111 1223368999999999999999999999999753
No 237
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=3.5e-08 Score=119.96 Aligned_cols=86 Identities=23% Similarity=0.304 Sum_probs=72.4
Q ss_pred chhhHHHHHHHHHHhhhcccchhhHHHHHhccCCChHHHhhhcCccccccccHHHHHHHHhhhccccc-cc--ccccHHH
Q 001202 974 NVASVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQREGRVCARLENFASGLELIGQKLQMGT-LQ--SRLDAEF 1050 (1124)
Q Consensus 974 ~~~~~~~~l~~~a~~l~~~~~l~~l~~f~~~~~f~~~~~l~~e~~~~~~~~~~~~~l~~~~~~~~~~~-~~--~~~~~~~ 1050 (1124)
+...|+.||+|||++||....|-|+|+|+++++|+++.||..||.|+++.++|..++..+|++|-++- |- .-.|--+
T Consensus 903 l~~~i~~~l~~ha~~lL~~~~l~dlg~~~~~l~f~l~~~l~~er~~~~~~~~~~~~~~~l~~~~~l~l~~~~a~~~~~~~ 982 (1023)
T KOG2006|consen 903 LALCIDEILARHARVLLLNFLLLDLGCFGADLHFKLVSLLTEERKRAADNDTFKSELSVLHEDFDLELPLKVAQLLDTSQ 982 (1023)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcceeehhhhHHHHHHHhcCchhhhHHHHHHHhhccccchhhHhhcchHh
Confidence 55689999999999999999999999999999999999999999999999999999999999998872 21 3334444
Q ss_pred HHHhhcccc
Q 001202 1051 LLAHMCSVK 1059 (1124)
Q Consensus 1051 ~~~~~~~~~ 1059 (1124)
+....++.|
T Consensus 983 ~~g~~r~~~ 991 (1023)
T KOG2006|consen 983 INGPIRATG 991 (1023)
T ss_pred hccchhhcc
Confidence 444444443
No 238
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.58 E-value=8.4e-05 Score=95.74 Aligned_cols=216 Identities=19% Similarity=0.236 Sum_probs=122.6
Q ss_pred CCCceEEEEEecCCcceEEEEecCCcEEEEEe----cCCceEeeeccccceecCCCCeE-EEEEccCCCEEEEEecCCeE
Q 001202 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSV----SKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVV 280 (1124)
Q Consensus 206 ~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~----~d~~i~~wd~~~~~~~~gh~~~v-~va~spdg~lLAsGs~DgtV 280 (1124)
.....|.++.|-++....++++.+|.++.... ....+.+. -.....+ |++||||+.+||..+.+|++
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~V--------G~vd~GI~a~~WSPD~Ella~vT~~~~l 144 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIV--------GSVDSGILAASWSPDEELLALVTGEGNL 144 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEE--------EEEcCcEEEEEECCCcCEEEEEeCCCEE
Confidence 44578999999999998999999999988733 22222221 1124566 99999999999999999998
Q ss_pred EEEEcCCC------------C--cee--------EEEee----------c-------cCCCCCCCCCCeEEEEECCCCCE
Q 001202 281 ELYDLAES------------A--SLI--------RTVSL----------Y-------DWGYSMDDTGPVSCIAWTPDNSA 321 (1124)
Q Consensus 281 ~vwd~~~~------------~--~~~--------~~l~~----------~-------~~g~~~~h~g~V~~lawSPDG~~ 321 (1124)
-+-+-+-. + +.+ ..++. . +.|... +...-..|+|..||.+
T Consensus 145 ~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~y 223 (928)
T PF04762_consen 145 LLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEY 223 (928)
T ss_pred EEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcE
Confidence 77542110 0 000 00000 0 000000 2223467999999999
Q ss_pred EEEEEC---C---CcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEec-CCcc
Q 001202 322 FAVGWK---S---RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEE-GSSE 394 (1124)
Q Consensus 322 Lasgs~---D---g~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~-~~~~ 394 (1124)
+|+.+- . +.+|||+-.| .+..+-+.- ..-- ....|.+.|.-+..+.. ++..
T Consensus 224 FAVss~~~~~~~~R~iRVy~ReG-~L~stSE~v-~gLe--------------------~~l~WrPsG~lIA~~q~~~~~~ 281 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSREG-ELQSTSEPV-DGLE--------------------GALSWRPSGNLIASSQRLPDRH 281 (928)
T ss_pred EEEEEEEcCCCceeEEEEECCCc-eEEeccccC-CCcc--------------------CCccCCCCCCEEEEEEEcCCCc
Confidence 999875 2 5799999874 343332210 0111 22345444432211111 1111
Q ss_pred eEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCC
Q 001202 395 RVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (1124)
Q Consensus 395 ~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG 474 (1124)
.|+-|.. +| +.+|+- .++ +......|..++|++|+..||+.-.|.
T Consensus 282 ~VvFfEr---------NG------LrhgeF------------------~l~--~~~~~~~v~~l~Wn~ds~iLAv~~~~~ 326 (928)
T PF04762_consen 282 DVVFFER---------NG------LRHGEF------------------TLR--FDPEEEKVIELAWNSDSEILAVWLEDR 326 (928)
T ss_pred EEEEEec---------CC------cEeeeE------------------ecC--CCCCCceeeEEEECCCCCEEEEEecCC
Confidence 1121111 00 111111 111 122345689999999999999988777
Q ss_pred eEEEEcCCCcEEE
Q 001202 475 LILYDIRQKKWRV 487 (1124)
Q Consensus 475 ~vlwd~~sg~wk~ 487 (1124)
.-+|....-.|.+
T Consensus 327 vqLWt~~NYHWYL 339 (928)
T PF04762_consen 327 VQLWTRSNYHWYL 339 (928)
T ss_pred ceEEEeeCCEEEE
Confidence 3399998888854
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.58 E-value=5.9e-06 Score=98.50 Aligned_cols=184 Identities=17% Similarity=0.140 Sum_probs=107.2
Q ss_pred ecCCCCeE-EEEEccCCCEEEEEecC---CeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEE-EEC
Q 001202 253 ELGSGDAV-CASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-GWK 327 (1124)
Q Consensus 253 ~~gh~~~v-~va~spdg~lLAsGs~D---gtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Las-gs~ 327 (1124)
+..+...+ +.+|||||+.||.++.+ ..|.+|++.+ +.... +. . +.+.+.+++|+|||+.|+. .+.
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~-g~~~~-~~----~----~~~~~~~~~~spDg~~l~~~~~~ 254 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT-GQREK-VA----S----FPGMNGAPAFSPDGSKLAVSLSK 254 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCC-CCEEE-ee----c----CCCCccceEECCCCCEEEEEECC
Confidence 34555556 88999999999988754 4799999986 44332 22 1 4556778999999997764 444
Q ss_pred CC--cEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee------eEEEEeCCCCeEEEEecC-CcceEEE
Q 001202 328 SR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEG-SSERVLI 398 (1124)
Q Consensus 328 Dg--~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~------~i~~W~~~~~~l~~~~~~-~~~~v~~ 398 (1124)
++ .|.+|++.++.. ..+..+ ......+.|+|++ +.++..+ .+..|+..+++....... ....-..
T Consensus 255 ~~~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~s~dg----~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~ 328 (417)
T TIGR02800 255 DGNPDIYVMDLDGKQL-TRLTNG-PGIDTEPSWSPDG----KSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPS 328 (417)
T ss_pred CCCccEEEEECCCCCE-EECCCC-CCCCCCEEECCCC----CEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeE
Confidence 44 588889987754 333333 2345577899987 5544322 455667666654333222 1111134
Q ss_pred Eec-cceEEeeccCC---ceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCC
Q 001202 399 FSF-GKCCLNRGVSG---MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (1124)
Q Consensus 399 ~s~-~k~~~s~s~d~---~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG 474 (1124)
+++ ++.++..+.++ .+.++++..+..+ .+. ........+|+|||++|+.++.++
T Consensus 329 ~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~---------------------~l~-~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 329 WSPDGDLIAFVHREGGGFNIAVMDLDGGGER---------------------VLT-DTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ECCCCCEEEEEEccCCceEEEEEeCCCCCeE---------------------Ecc-CCCCCCCceECCCCCEEEEEEeCC
Confidence 555 55555544433 2333333221110 000 111123458999999998887665
No 240
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.58 E-value=8.9e-06 Score=97.60 Aligned_cols=213 Identities=14% Similarity=0.140 Sum_probs=110.3
Q ss_pred cceeEEEEecCCcEEEEEeCC-C--eEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCe
Q 001202 68 GENLQAVWSPDTKLIAVVTSS-L--YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKH 144 (1124)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~d-g--~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~ 144 (1124)
+.+....|||||+.|+..+.+ | .|.+|++.++....... ..+.. .--.+++|++.
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~---------------------~~g~~-~~~~wSPDG~~ 275 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS---------------------FPGIN-GAPRFSPDGKK 275 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC---------------------CCCCc-CCeeECCCCCE
Confidence 445679999999999887543 3 46666765543211000 00000 11256678887
Q ss_pred EEEE-ecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceE
Q 001202 145 MLLG-LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1124)
Q Consensus 145 llv~-t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~ 223 (1124)
++.. ..+|...++.++.+...... +..+..... .
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~-----------------------------------lt~~~~~~~----------~ 310 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTR-----------------------------------ITRHRAIDT----------E 310 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEE-----------------------------------CccCCCCcc----------c
Confidence 7654 45676555556543221111 001111111 2
Q ss_pred EEEecCCcEEEEEec-CCceEee--eccccce--ecCCCCeE-EEEEccCCCEEEEEec-CCeEEE--EEcCCCCceeEE
Q 001202 224 FVLYSNGQLMSCSVS-KKGLKLA--EFIKIDK--ELGSGDAV-CASIAPEQQILAVGTR-RGVVEL--YDLAESASLIRT 294 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~-d~~i~~w--d~~~~~~--~~gh~~~v-~va~spdg~lLAsGs~-DgtV~v--wd~~~~~~~~~~ 294 (1124)
..++|||+.++..+. ++...+| +..+++. +....... ..+|+|||+.|+..+. ++..+| +|+++ +. ...
T Consensus 311 p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~ 388 (448)
T PRK04792 311 PSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQV 388 (448)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEE
Confidence 344577776655543 2333343 4333321 11112222 5689999999887655 454555 45544 33 333
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCc---EEEEEcCCCeeeEEeccCCcCceeeeEEcC
Q 001202 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG---LTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (1124)
Q Consensus 295 l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~---I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp 360 (1124)
+. . + ......+|+|||+.|+..+.+++ +.+++..+. ....+..+ ...+..++|+|
T Consensus 389 lt--~-~------~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~-~~~~l~~~-~g~~~~p~Wsp 446 (448)
T PRK04792 389 LT--S-T------RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR-FKARLPAG-QGEVKSPAWSP 446 (448)
T ss_pred cc--C-C------CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCC-CCCcCCCccCC
Confidence 32 1 1 11223479999998877665432 667777654 34445443 33456666766
No 241
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=2.9e-05 Score=91.69 Aligned_cols=470 Identities=16% Similarity=0.152 Sum_probs=227.7
Q ss_pred CCceeecCCCCCCCCCceEEEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhh-cceeEEEEecCC-----
Q 001202 6 GWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDT----- 79 (1124)
Q Consensus 6 g~P~~l~~~~~~~~~~~~iv~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wSPDg----- 79 (1124)
-||..+|-... ++....+.++|.| +||-++.+.|.+-|.. ....+. +++.| ..++.|.|+|-.
T Consensus 4 ~s~~tlpG~l~--~sN~~A~Dw~~~G-LiAygshslV~VVDs~-s~q~iq-------sie~h~s~V~~VrWap~~~p~~l 72 (1062)
T KOG1912|consen 4 VSDHTLPGPLS--RSNRNAADWSPSG-LIAYGSHSLVSVVDSR-SLQLIQ-------SIELHQSAVTSVRWAPAPSPRDL 72 (1062)
T ss_pred cccccCCCCCC--cccccccccCccc-eEEEecCceEEEEehh-hhhhhh-------ccccCccceeEEEeccCCCchhc
Confidence 46666653211 2345567788877 9999999999999986 322222 23333 456789997742
Q ss_pred -------cEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecC-CeEEEEecC
Q 001202 80 -------KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSD 151 (1124)
Q Consensus 80 -------~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~~llv~t~d 151 (1124)
-.||++.-.|.|.+||.........+..+.. ++..+.|-... .+. +.+++-...
T Consensus 73 lS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~---~~qdl~W~~~r---------------d~Srd~LlaIh~s 134 (1062)
T KOG1912|consen 73 LSPSSSQLLIASADISGRIILVDFVLASVINWLSHSND---SVQDLCWVPAR---------------DDSRDVLLAIHGS 134 (1062)
T ss_pred cCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCc---chhheeeeecc---------------CcchheeEEecCC
Confidence 2577777789999999987654333322211 12222332211 112 223333344
Q ss_pred CcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccC-CCCceEEEEEecCCc-ceEEEEecC
Q 001202 152 GSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF-PISSAIIWLELCLPM-RLLFVLYSN 229 (1124)
Q Consensus 152 g~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~-~~~~~I~~i~~s~~~-~~~~~~s~d 229 (1124)
..+.+ |+..++..+ |-+ -......++.++|.. ..++..+..
T Consensus 135 s~lvL--wntdtG~k~-----------------------------------Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~ 177 (1062)
T KOG1912|consen 135 STLVL--WNTDTGEKF-----------------------------------WKYDYSHEILSCFRVDPFDSRHFCVLGSK 177 (1062)
T ss_pred cEEEE--EEccCCcee-----------------------------------eccccCCcceeeeeeCCCCcceEEEEccC
Confidence 45544 544433221 000 111223345555543 234444444
Q ss_pred CcEEEEEe-----cCCceEeeecccc-------cee--cC--CC----Ce---E---EEEEccCCCEEEEEecCCeEEEE
Q 001202 230 GQLMSCSV-----SKKGLKLAEFIKI-------DKE--LG--SG----DA---V---CASIAPEQQILAVGTRRGVVELY 283 (1124)
Q Consensus 230 G~~~~~~~-----~d~~i~~wd~~~~-------~~~--~g--h~----~~---v---~va~spdg~lLAsGs~DgtV~vw 283 (1124)
|.++.+.. ++...+...+.+. ++- .| ++ .+ + ..+|+|..+.+....-...+.|+
T Consensus 178 g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~ 257 (1062)
T KOG1912|consen 178 GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVF 257 (1062)
T ss_pred ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEE
Confidence 44443321 1222222222111 000 00 00 11 1 34789988877777788899999
Q ss_pred EcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCC--EEEEEECCCcEEEEEcCCCe-------------------ee
Q 001202 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGCR-------------------LM 342 (1124)
Q Consensus 284 d~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~--~Lasgs~Dg~I~vWdv~~~~-------------------l~ 342 (1124)
|++- ..++.+..+ ..|.+.-+.|-||++ .|..+-.||.+.+|-..... ++
T Consensus 258 dle~-~~~l~vvpi--------er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~v 328 (1062)
T KOG1912|consen 258 DLEY-ECCLAVVPI--------ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVV 328 (1062)
T ss_pred cchh-hceeEEEEe--------ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEE
Confidence 9876 556665553 356688999999987 78999999999999764311 12
Q ss_pred EEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecC-CcceEEEEeccceEEeeccCCceeeeEeee
Q 001202 343 STIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEG-SSERVLIFSFGKCCLNRGVSGMTYARQVIY 421 (1124)
Q Consensus 343 ~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~-~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~ 421 (1124)
+..+.. .....+..|..++....+.+.+...+|...++++-..... ..+-+.-|+|.......+. .++.++.+
T Consensus 329 r~m~~~---rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k---~~l~~LS~ 402 (1062)
T KOG1912|consen 329 RPMEEF---RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGK---TSLISLSD 402 (1062)
T ss_pred eechhc---ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhh---ccccchhh
Confidence 222111 1111112232211123344445777888876654332211 1112234444111111111 01111111
Q ss_pred cCCeEEEeecCCCccceeeecccceeec-----cCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCcee
Q 001202 422 GEDRLLVVQSEDTDELKILHLNLPVSYI-----SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQ 495 (1124)
Q Consensus 422 ~~~~l~l~~~~~~~~~~w~~~~~p~~~~-----~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~ 495 (1124)
.+. +......-+....|.--+ +.|.|- . .-..+|+|...|+| ++|+.++... ....-+
T Consensus 403 dg~-------h~sGs~~~~~~p~p~~t~~~~~p~~n~~~--~----~~pLvAvGT~sGTV~vvdvst~~v~---~~fsvh 466 (1062)
T KOG1912|consen 403 DGS-------HSSGSTCVRMRPMPELTKVENDPGGNTPA--G----TVPLVAVGTNSGTVDVVDVSTNAVA---ASFSVH 466 (1062)
T ss_pred cCC-------CCCCceeeecccCcccceeecCCCCCccc--e----eeeeEEeecCCceEEEEEecchhhh---hhhccc
Confidence 000 000000000001111000 111111 0 11478999999999 9999887521 111122
Q ss_pred eeEEEEEEecCCE-EEEEEEecCC---CeE--EEEEeeCC-CCCCcceEEEeecCC--ccEEEEeeCCEEEEEEcCCeEE
Q 001202 496 KIQSKGLLWLGKI-IVVCNYIDSS---NTY--ELLFYPRY-HLDQSSLLCRKSLLA--KPIVMDVYEDYILVTYRPFDVH 566 (1124)
Q Consensus 496 ~~~v~gl~W~~~~-liv~~~~~~~---~~~--elrly~~~-~ld~~~~l~~~~l~s--~~l~l~~~~~~llv~~~d~~i~ 566 (1124)
.-.|.|+.|.++. ++..+|+... +.+ ++.+-+.. .+....-....+-.+ ..+-.+..+.|+.+.+.+.-+.
T Consensus 467 t~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plE 546 (1062)
T KOG1912|consen 467 TSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLE 546 (1062)
T ss_pred ccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchH
Confidence 2347899998875 4555553221 111 22222221 222211111111112 2344567889999988899999
Q ss_pred EEEEEE
Q 001202 567 IFHVKL 572 (1124)
Q Consensus 567 l~~~~~ 572 (1124)
+|+++.
T Consensus 547 iwd~kt 552 (1062)
T KOG1912|consen 547 IWDLKT 552 (1062)
T ss_pred HHhhcc
Confidence 998853
No 242
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.56 E-value=6.8e-06 Score=95.06 Aligned_cols=161 Identities=16% Similarity=0.142 Sum_probs=127.4
Q ss_pred CCcEEEEEecCCceEeeeccccceec-----CCCC--eEEEEEc------c--------------CCCEEEEEecCCeEE
Q 001202 229 NGQLMSCSVSKKGLKLAEFIKIDKEL-----GSGD--AVCASIA------P--------------EQQILAVGTRRGVVE 281 (1124)
Q Consensus 229 dG~~~~~~~~d~~i~~wd~~~~~~~~-----gh~~--~v~va~s------p--------------dg~lLAsGs~DgtV~ 281 (1124)
-+.+++....|+.+++|+..+.+..+ .|.. .++..|. | |-..+|-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 34566666677778888877665431 1111 1233332 2 334788999999999
Q ss_pred EEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCC
Q 001202 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (1124)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~ 361 (1124)
+|++.. ++...++.. ..|.|+|.++.|+.+-.+|-|++.|+.+..|+...++.++..... ...+.+++.+||
T Consensus 84 ~ys~~~-g~it~~~st------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-~~~~~sl~is~D 155 (541)
T KOG4547|consen 84 LYSVAG-GEITAKLST------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-KPLVSSLCISPD 155 (541)
T ss_pred EEEecC-CeEEEEEec------CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-CCccceEEEcCC
Confidence 999987 776666651 249999999999999999999999999999999999998888775 678999999999
Q ss_pred CCCCcceEEEee-eEEEEeCCCCeEEEEecCCcceEEEEec
Q 001202 362 QDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERVLIFSF 401 (1124)
Q Consensus 362 ~~~~~~~l~sg~-~i~~W~~~~~~l~~~~~~~~~~v~~~s~ 401 (1124)
+ ..+.+++ ++++|+.++.+++....||.+.|-.++|
T Consensus 156 ~----~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 156 G----KILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred C----CEEEeccceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 8 8888777 9999999999999999999999876666
No 243
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.56 E-value=2.6e-05 Score=90.69 Aligned_cols=283 Identities=12% Similarity=0.082 Sum_probs=140.3
Q ss_pred EEEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEe-CCCeEEEEEeeecCce
Q 001202 25 IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQITEKS 102 (1124)
Q Consensus 25 v~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t-~dg~l~i~~v~~~~~~ 102 (1124)
+.|+|||+++.+++ ++.|.++|.. ....+....-. +.-..+++||||++++++. ..+.+.++|.++.+..
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~-~~~~v~~i~~G-------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLA-TGKVVATIKVG-------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETT-SSSEEEEEE-S-------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred EEecCCCCEEEEEcCCCeEEEEECC-cccEEEEEecC-------CCcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 67899999765544 6789999996 55555544211 2235799999999999876 5789999997653211
Q ss_pred eecCCCCCCCcceeeEEEEeeeeeecccccceEEEEe--ecCCeEEEEecC-CcEEEEeccCccccceeeccCCCCcccc
Q 001202 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SDNKHMLLGLSD-GSLYSISWKGEFYGAFELVHSSNDSSVA 179 (1124)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~d~~~llv~t~d-g~v~~~~Wd~~~~~~~~l~~~~~~~~~i 179 (1124)
...+ ...........++.+|. +.+..++++..+ |.+.+++..........
T Consensus 114 ~~I~----------------~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~----------- 166 (369)
T PF02239_consen 114 KTIP----------------TGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT----------- 166 (369)
T ss_dssp EEEE------------------EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE-----------
T ss_pred eecc----------------cccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee-----------
Confidence 0000 01111111223454543 345567777765 66666554432111000
Q ss_pred ccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEe-cCCceEeeecccccee-----
Q 001202 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKIDKE----- 253 (1124)
Q Consensus 180 ~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~-~d~~i~~wd~~~~~~~----- 253 (1124)
.........+ ..++|||++++.+. ....+-++|..+.+..
T Consensus 167 ------------------------~i~~g~~~~D----------~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 167 ------------------------TIKVGRFPHD----------GGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp ------------------------EEE--TTEEE----------EEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred ------------------------eecccccccc----------cccCcccceeeecccccceeEEEeeccceEEEEeec
Confidence 0000111222 34456676665543 2334444554433221
Q ss_pred --cCCCCeE-E---------EEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCE
Q 001202 254 --LGSGDAV-C---------ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA 321 (1124)
Q Consensus 254 --~gh~~~v-~---------va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~ 321 (1124)
..|.... . -+.+..+....+.-....+.+|+... .+.++++.. ..++ ..++-+||+.+
T Consensus 213 g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~-wkvv~~I~~--------~G~g-lFi~thP~s~~ 282 (369)
T PF02239_consen 213 GKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA-WKVVKTIPT--------QGGG-LFIKTHPDSRY 282 (369)
T ss_dssp SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB-TSEEEEEE---------SSSS---EE--TT-SE
T ss_pred cccccccccccccCCCcceEEeeccccceecccccCCccccchhhc-CeEEEEEEC--------CCCc-ceeecCCCCcc
Confidence 1122222 1 11222333332222234556677666 677777772 2333 78889999999
Q ss_pred EEEE----ECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee----eEEEEeCCCCeEEEEe
Q 001202 322 FAVG----WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIE 389 (1124)
Q Consensus 322 Lasg----s~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~----~i~~W~~~~~~l~~~~ 389 (1124)
+.+. ...++|.|+|..+.+...++.......+..+.|+++|. +.++|.- .+.++|..+.++....
T Consensus 283 vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~---~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 283 VWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGK---EVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp EEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSS---EEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCC---EEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 9998 44589999999998888887643223478888999982 2233211 4556666666555443
No 244
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.55 E-value=0.0008 Score=78.08 Aligned_cols=71 Identities=17% Similarity=0.254 Sum_probs=47.0
Q ss_pred EEEEEccCCCEEEEEec-CCeEEEEEcCCCCc-eeE--EEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC-CCcEEEE
Q 001202 260 VCASIAPEQQILAVGTR-RGVVELYDLAESAS-LIR--TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVW 334 (1124)
Q Consensus 260 v~va~spdg~lLAsGs~-DgtV~vwd~~~~~~-~~~--~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~-Dg~I~vW 334 (1124)
-++.++|+++++.+... ...|.+|+++.... +.. .+.. . .-..-+.++|+|||+++.+..+ +++|.++
T Consensus 147 H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~---~----~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 147 HQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV---P----PGSGPRHLAFSPDGKYAYVVNELSNTVSVF 219 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC---S----TTSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred eeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc---c----cCCCCcEEEEcCCcCEEEEecCCCCcEEEE
Confidence 38999999998777543 44899999987332 322 2221 1 2233589999999998866654 5789999
Q ss_pred EcC
Q 001202 335 SVS 337 (1124)
Q Consensus 335 dv~ 337 (1124)
++.
T Consensus 220 ~~~ 222 (345)
T PF10282_consen 220 DYD 222 (345)
T ss_dssp EEE
T ss_pred eec
Confidence 987
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.54 E-value=1.5e-06 Score=105.96 Aligned_cols=140 Identities=13% Similarity=0.162 Sum_probs=107.1
Q ss_pred cCCcEEEEEecCCceEeeeccc---cceecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCC
Q 001202 228 SNGQLMSCSVSKKGLKLAEFIK---IDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (1124)
Q Consensus 228 ~dG~~~~~~~~d~~i~~wd~~~---~~~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~ 303 (1124)
++--++++++.-+.+-+|+... +-...||.+.+ .+.++.||+++|+.|.|.++|+|++++ .+... ...+|
T Consensus 143 ~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s-~~~~~---~~~fg-- 216 (967)
T KOG0974|consen 143 AEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS-REVLG---CTGFG-- 216 (967)
T ss_pred CcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccc-ccccC---ccccc--
Confidence 4444555555566666676541 11347999999 999999999999999999999999998 43332 22335
Q ss_pred CCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeC
Q 001202 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE 380 (1124)
Q Consensus 304 ~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~ 380 (1124)
|++.|..+.|.|. .++|+++|.+.++|+..+..+. ++.+|....+..++..++. ...++++ .+++|+.
T Consensus 217 --HsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~----~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 217 --HSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGV----IIKVTGGNDSTLKLWDL 287 (967)
T ss_pred --ccceeEEEEeccc--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCc----eEEEeeccCcchhhhhh
Confidence 9999999999998 9999999999999988876654 8888877788888888775 4555554 7777765
Q ss_pred CC
Q 001202 381 YG 382 (1124)
Q Consensus 381 ~~ 382 (1124)
.+
T Consensus 288 ~~ 289 (967)
T KOG0974|consen 288 NG 289 (967)
T ss_pred hc
Confidence 43
No 246
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.51 E-value=5e-05 Score=86.65 Aligned_cols=77 Identities=10% Similarity=0.118 Sum_probs=60.3
Q ss_pred EEEEccCCCEEEEEe----------cCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCC-EEEEEE-CC
Q 001202 261 CASIAPEQQILAVGT----------RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGW-KS 328 (1124)
Q Consensus 261 ~va~spdg~lLAsGs----------~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~-~Lasgs-~D 328 (1124)
-++++|+++.+-+.. ..+.|.++|..+ .+.+..+.. ...+..+++||||+ .|.+.. .+
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v---------G~~~~~iavS~Dgkp~lyvtn~~s 321 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL---------GHEIDSINVSQDAKPLLYALSTGD 321 (352)
T ss_pred eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC---------CCceeeEEECCCCCeEEEEeCCCC
Confidence 499999988877743 124799999887 777776662 23588999999999 887766 56
Q ss_pred CcEEEEEcCCCeeeEEecc
Q 001202 329 RGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 329 g~I~vWdv~~~~l~~tl~~ 347 (1124)
+.|.|.|+.+++.+.++.+
T Consensus 322 ~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 322 KTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred CcEEEEECcCCeEEeeecc
Confidence 8899999999998888844
No 247
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.51 E-value=0.00038 Score=80.80 Aligned_cols=268 Identities=13% Similarity=0.150 Sum_probs=134.8
Q ss_pred eEEEEeeCCeEEEEEcC-----CcEEEEecCCCc-eeEEEEeeChHHHhhhcc-eeEEEEecCCcEEEEEe-CCCeEEEE
Q 001202 23 QIIYFKVNNGLLLIASP-----CHIELWSSSQHK-VRLGKYKRDSESVQREGE-NLQAVWSPDTKLIAVVT-SSLYLHIF 94 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~~-----~~l~IW~~~~~~-~~l~~~~r~~~sl~~~G~-~~~v~wSPDg~~Lav~t-~dg~l~i~ 94 (1124)
..+.++|++++|-++.. +.|..|.+. +. ..+....+.. ..|. ...++.+||+++|+++. .+|.+.+|
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~-~~~g~L~~~~~~~----~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRID-PDTGTLTLLNSVP----SGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEE-TTTTEEEEEEEEE----ESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEEC-CCcceeEEeeeec----cCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 34678999886555433 478888876 32 2333332221 1233 24689999999999988 47999999
Q ss_pred EeeecCceeecCCCCCCCcceeeEEEEeeee--eecccccceEE--EEeecCCeEEEEe-cCCcEEEEeccCccccceee
Q 001202 95 KVQITEKSIQIGGKQPSGLFFIKISLVLNEQ--LPFAEKGLSVS--NIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFEL 169 (1124)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~--~i~~d~~~llv~t-~dg~v~~~~Wd~~~~~~~~l 169 (1124)
++......... .. .+...+. .+......... .+.++++.+++.. ....|..+.++..... +..
T Consensus 115 ~l~~~g~l~~~---------~~--~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~-l~~ 182 (345)
T PF10282_consen 115 PLDDDGSLGEV---------VQ--TVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK-LTP 182 (345)
T ss_dssp EECTTSEEEEE---------EE--EEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T-EEE
T ss_pred EccCCccccee---------ee--ecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce-EEE
Confidence 99764211000 00 0111111 00011112223 3455667776654 4557888888765421 100
Q ss_pred ccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCC-cEEEEEec--CCceEeee
Q 001202 170 VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNG-QLMSCSVS--KKGLKLAE 246 (1124)
Q Consensus 170 ~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG-~~~~~~~~--d~~i~~wd 246 (1124)
... .-...+..-+.+.|+|+...+.++..-. .+.+.... ++.++...
T Consensus 183 ---------~~~---------------------~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 183 ---------VDS---------------------IKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp ---------EEE---------------------EECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred ---------eec---------------------cccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence 000 0112233345555655433333332222 22222222 22222221
Q ss_pred cccc--ceecCCCCeEEEEEccCCCEEEEEe-cCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEE
Q 001202 247 FIKI--DKELGSGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA 323 (1124)
Q Consensus 247 ~~~~--~~~~gh~~~v~va~spdg~lLAsGs-~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~La 323 (1124)
.... ....+...+-.++++|||++|.++. .+.+|.+|+++.....+..+....-+ ...-+.++++|||++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-----G~~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-----GKFPRHFAFSPDGRYLY 307 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-----SSSEEEEEE-TTSSEEE
T ss_pred EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-----CCCccEEEEeCCCCEEE
Confidence 1110 0011222344899999999876655 46789999995433333333321111 12258899999999999
Q ss_pred EEEC-CCcEEEEEc--CCCeee
Q 001202 324 VGWK-SRGLTVWSV--SGCRLM 342 (1124)
Q Consensus 324 sgs~-Dg~I~vWdv--~~~~l~ 342 (1124)
++.. ++.|.+|++ .+|.+.
T Consensus 308 Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 308 VANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEETTTTEEEEEEEETTTTEEE
T ss_pred EEecCCCeEEEEEEeCCCCcEE
Confidence 8885 478999977 466644
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.48 E-value=6e-06 Score=89.31 Aligned_cols=259 Identities=10% Similarity=0.029 Sum_probs=133.1
Q ss_pred cceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceee-----cCCCCCCCcceeeEEEEeeeeeecccccceEEEEe-ec
Q 001202 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQ-----IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV-SD 141 (1124)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~d 141 (1124)
.-+.+|.|..+|.+||||..+|.+.+|.-....+.-| .+.|.++--.+.+++ +.+ ....+.-+. ..
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSle--ieE------KinkIrw~~~~n 97 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLE--IEE------KINKIRWLDDGN 97 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhh--hhh------hhhhceecCCCC
Confidence 4456899999999999999999999997554332111 111222111111111 111 101111111 12
Q ss_pred CCeEEEEecCCcEEEEeccCcccc--ceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCC
Q 001202 142 NKHMLLGLSDGSLYSISWKGEFYG--AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP 219 (1124)
Q Consensus 142 ~~~llv~t~dg~v~~~~Wd~~~~~--~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~ 219 (1124)
...+++.+.|.++.+|........ ...+. .......+.........+-...-+ ...++..-..|...|.
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~-~~~~~~~~~~lr~p~~~~~~~~ve-a~prRv~aNaHtyhiN------- 168 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLP-EEGPPGTITSLRLPVEGRHDLEVE-ASPRRVYANAHTYHIN------- 168 (433)
T ss_pred ccEEEEecCCcceeeeeeecccccccccccc-ccCCCCccceeeceeeccccceee-eeeeeeccccceeEee-------
Confidence 467888899999988543321110 11110 000001111000000000000000 0001112223444444
Q ss_pred cceEEEEecCCcEEEEEecCCceEeeeccccce-e----------cCCCCeE-EEEEccC-CCEEEEEecCCeEEEEEcC
Q 001202 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-E----------LGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLA 286 (1124)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~-~----------~gh~~~v-~va~spd-g~lLAsGs~DgtV~vwd~~ 286 (1124)
.+.+.+|+..+++ ++|-.|.+|+...... . ..-+..+ +..|+|. ..+++-.+.-|+|++-|+.
T Consensus 169 ---SIS~NsD~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR 244 (433)
T KOG1354|consen 169 ---SISVNSDKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMR 244 (433)
T ss_pred ---eeeecCccceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeech
Confidence 4555688888775 5777888997653211 1 1123344 7889996 5678888899999999998
Q ss_pred CCCceeE---EEeeccCCCC----CCCCCCeEEEEECCCCCEEEEEECCCcEEEEEc-CCCeeeEEeccC
Q 001202 287 ESASLIR---TVSLYDWGYS----MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV-SGCRLMSTIRQI 348 (1124)
Q Consensus 287 ~~~~~~~---~l~~~~~g~~----~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv-~~~~l~~tl~~h 348 (1124)
...-+-. .+.....+.+ .+-...|..+.||++|+++++-.. -+|++||+ ...+.+.+..-|
T Consensus 245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence 5222211 1111111100 012345889999999999998765 59999999 445555555544
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.46 E-value=0.0003 Score=77.64 Aligned_cols=210 Identities=18% Similarity=0.252 Sum_probs=117.9
Q ss_pred EEEEEccCCCEEEEEec-CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCC----------eEEEEECCCCCEEEEEECC
Q 001202 260 VCASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYDWGYSMDDTGP----------VSCIAWTPDNSAFAVGWKS 328 (1124)
Q Consensus 260 v~va~spdg~lLAsGs~-DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~----------V~~lawSPDG~~Lasgs~D 328 (1124)
+.++++++|+++.++.- .|.|.++.++..+.+........ |+++ +.+..++|||++|++..--
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~------h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG 165 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK------HTGSGPHERQESPHVHSANFTPDGRYLVVPDLG 165 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee------cCCCCCCccccCCccceeeeCCCCCEEEEeecC
Confidence 68999999999888764 57999999977565433322111 4444 8999999999999988642
Q ss_pred -CcEEEEEcCCCeeeEEeccC--CcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceE
Q 001202 329 -RGLTVWSVSGCRLMSTIRQI--SLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCC 405 (1124)
Q Consensus 329 -g~I~vWdv~~~~l~~tl~~h--~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~ 405 (1124)
..|.++++..+.+...-... ....-..++|+|++ .-.+.+..-
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~--------------------k~aY~v~EL-------------- 211 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNG--------------------KYAYLVNEL-------------- 211 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCC--------------------cEEEEEecc--------------
Confidence 37889999876543211100 01122344455554 222222211
Q ss_pred EeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCC-eE-EEEc--C
Q 001202 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG-LI-LYDI--R 481 (1124)
Q Consensus 406 ~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG-~v-lwd~--~ 481 (1124)
++++.+|.......++--. .....+|..|.+.+| ...+.+||||++|.++.+.- .+ +|.+ .
T Consensus 212 -----~stV~v~~y~~~~g~~~~l---------Q~i~tlP~dF~g~~~-~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 212 -----NSTVDVLEYNPAVGKFEEL---------QTIDTLPEDFTGTNW-AAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred -----CCEEEEEEEcCCCceEEEe---------eeeccCccccCCCCc-eeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 1122222221111100000 001124777777665 45788999999999886532 23 6655 4
Q ss_pred CCcEEEecCcCceeeeEEEE--EEecCCEEEEEEEecCCCeEEEEEeeCC
Q 001202 482 QKKWRVFGDITQEQKIQSKG--LLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 482 sg~wk~f~~~~~e~~~~v~g--l~W~~~~liv~~~~~~~~~~elrly~~~ 529 (1124)
+++...++...-|.. .-++ +.-.+++|++++. .++.+.+|.++
T Consensus 277 ~g~L~~~~~~~teg~-~PR~F~i~~~g~~Liaa~q----~sd~i~vf~~d 321 (346)
T COG2706 277 GGKLELVGITPTEGQ-FPRDFNINPSGRFLIAANQ----KSDNITVFERD 321 (346)
T ss_pred CCEEEEEEEeccCCc-CCccceeCCCCCEEEEEcc----CCCcEEEEEEc
Confidence 565554443222221 1223 3445788888844 23469999885
No 250
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.46 E-value=1.7e-06 Score=97.37 Aligned_cols=292 Identities=12% Similarity=0.138 Sum_probs=173.3
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee----cCCCCeE-EEEEccC--CCEEEEEec
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPE--QQILAVGTR 276 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~----~gh~~~v-~va~spd--g~lLAsGs~ 276 (1124)
+..|.++|..+.|+ ..|..++++++|..+.+||....... .||..-| -..|=|. .+.+++.+.
T Consensus 138 L~~H~GcVntV~FN----------~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFN----------QRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred ccCCCCccceeeec----------ccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccc
Confidence 45778888776666 78999999999999999998776543 5888888 6778774 567999999
Q ss_pred CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCC-CEEEEEECCCcEEEEEcCCCeeeEEe--ccCCcC--
Q 001202 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTI--RQISLS-- 351 (1124)
Q Consensus 277 DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG-~~Lasgs~Dg~I~vWdv~~~~l~~tl--~~h~~~-- 351 (1124)
||.|++=.+...+....+..+. .|.|+|.-++.-|+. +-|.++++|+.+.-.|+........+ +.+...
T Consensus 208 dgqvr~s~i~~t~~~e~t~rl~------~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~ 281 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVENTKRLA------PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER 281 (559)
T ss_pred cCceeeeeeccccceecceecc------cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence 9999998887644433333322 299999999999975 47899999999999998765432222 122122
Q ss_pred -ceeeeEEcCCCCCCcceEEEee--eEEEEeCCCCeEE------EE-ec-----CCcceEEEEeccceEEeeccCCceee
Q 001202 352 -SISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLY------AI-EE-----GSSERVLIFSFGKCCLNRGVSGMTYA 416 (1124)
Q Consensus 352 -~V~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l~------~~-~~-----~~~~~v~~~s~~k~~~s~s~d~~v~~ 416 (1124)
...+++..|... +...+.|. -.++++....+.- .. .+ .....|..+.+ +.+++-.+
T Consensus 282 v~L~~Ia~~P~nt--~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Y-------sh~~sElL 352 (559)
T KOG1334|consen 282 VGLYTIAVDPRNT--NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVY-------SHDGSELL 352 (559)
T ss_pred eeeeeEecCCCCc--cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEe-------cCCcccee
Confidence 456666666541 12223333 4444543322111 00 00 01111211111 11111111
Q ss_pred eEeeecCCeEEEeecC-----CCccceeeecccceeeccCCC--ceEEEEE-ccCCCEEEEEcCCCeE-EEEcCCCcEEE
Q 001202 417 RQVIYGEDRLLVVQSE-----DTDELKILHLNLPVSYISQNW--PVQHVAA-SKDGMFLAVAGLHGLI-LYDIRQKKWRV 487 (1124)
Q Consensus 417 w~l~~~~~~l~l~~~~-----~~~~~~w~~~~~p~~~~~~~~--~I~~va~-SpdG~~lAvag~dG~v-lwd~~sg~wk~ 487 (1124)
..+.+..+|+.... +.....-..--.|..|+||.. .|..+-| -|...|+++|+.-|.| +|+-.+++.-.
T Consensus 353 --aSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 353 --ASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred --eeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence 11222333433211 000000001113455888854 4777776 6888999999999999 99998887544
Q ss_pred ecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeC
Q 001202 488 FGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 488 f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~ 528 (1124)
|... .+ ..|..+.-++..-|.|+. .-++.|++|..
T Consensus 431 ~Meg--Dr-~VVNCLEpHP~~PvLAsS---Gid~DVKIWTP 465 (559)
T KOG1334|consen 431 FMEG--DR-HVVNCLEPHPHLPVLASS---GIDHDVKIWTP 465 (559)
T ss_pred Hhhc--cc-ceEeccCCCCCCchhhcc---CCccceeeecC
Confidence 4211 11 134456666666566544 45568999966
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.45 E-value=4.6e-06 Score=96.43 Aligned_cols=209 Identities=17% Similarity=0.191 Sum_probs=124.2
Q ss_pred ecCCcEEEEEeCCCeEEEEEeeecCceeecCC-CCCCCcceeeEEEEeeee-eecccc-cceEEEEeecCCeEEEEecCC
Q 001202 76 SPDTKLIAVVTSSLYLHIFKVQITEKSIQIGG-KQPSGLFFIKISLVLNEQ-LPFAEK-GLSVSNIVSDNKHMLLGLSDG 152 (1124)
Q Consensus 76 SPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~-~~~v~~i~~d~~~llv~t~dg 152 (1124)
.|-..++|..++||+|++|++..+....-+.. .+-.+.+. ...|.+... .+.+.. -..+.-.+.+...++.|+..|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~-~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCT-YTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcce-eEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 35567899999999999999987643222211 11122222 222321110 000000 000111233556778899999
Q ss_pred cEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcE
Q 001202 153 SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQL 232 (1124)
Q Consensus 153 ~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~ 232 (1124)
.|..++-.+...... .....|.+.|..+..+.....+-.+..|+++
T Consensus 81 ~v~~ys~~~g~it~~----------------------------------~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v 126 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAK----------------------------------LSTDKHYGNVNEILDAQRLGCIYSVGADLKV 126 (541)
T ss_pred cEEEEEecCCeEEEE----------------------------------EecCCCCCcceeeecccccCceEecCCceeE
Confidence 998876443221111 1123455666666655544444444445554
Q ss_pred EEEEecCC-ceEeeeccccceecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCe
Q 001202 233 MSCSVSKK-GLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPV 310 (1124)
Q Consensus 233 ~~~~~~d~-~i~~wd~~~~~~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V 310 (1124)
......+. .++.|. +....+ ++.++|||..+++|+ ++|++||+++ .+.+.++. | |.++|
T Consensus 127 ~~~~~~~~~~~~~~~--------~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~-kevv~~ft----g----h~s~v 187 (541)
T KOG4547|consen 127 VYILEKEKVIIRIWK--------EQKPLVSSLCISPDGKILLTAS--RQIKVLDIET-KEVVITFT----G----HGSPV 187 (541)
T ss_pred EEEecccceeeeeec--------cCCCccceEEEcCCCCEEEecc--ceEEEEEccC-ceEEEEec----C----CCcce
Confidence 44333221 223332 334445 889999999999986 7899999998 88888888 7 99999
Q ss_pred EEEEECCC-----CC-EEEEEECCCcEEEEEcCC
Q 001202 311 SCIAWTPD-----NS-AFAVGWKSRGLTVWSVSG 338 (1124)
Q Consensus 311 ~~lawSPD-----G~-~Lasgs~Dg~I~vWdv~~ 338 (1124)
++++|.-+ |. +|.++..+..+.+|-+..
T Consensus 188 ~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 188 RTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999887 55 455566678899997755
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.45 E-value=2.6e-05 Score=92.96 Aligned_cols=126 Identities=10% Similarity=0.047 Sum_probs=76.5
Q ss_pred EEEecCCcEEEEEec-CCceEeeecc----c--cceecCCCCeE-EEEEccCCCEEEEEecC---CeEEEEEcCCCCcee
Q 001202 224 FVLYSNGQLMSCSVS-KKGLKLAEFI----K--IDKELGSGDAV-CASIAPEQQILAVGTRR---GVVELYDLAESASLI 292 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~-d~~i~~wd~~----~--~~~~~gh~~~v-~va~spdg~lLAsGs~D---gtV~vwd~~~~~~~~ 292 (1124)
..++|||+.++..++ ++..++|... . .+.+..+...+ ..+|||||+.||..+.+ ..|.+||+++ ++.
T Consensus 286 p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~- 363 (428)
T PRK01029 286 PSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD- 363 (428)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-
Confidence 355688876665553 4545555321 1 11223333444 78999999999877653 3688999876 443
Q ss_pred EEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC---CCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCC
Q 001202 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK---SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (1124)
Q Consensus 293 ~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~---Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~ 361 (1124)
..+. . ..+.+....|+|||+.|+.... ...|.+||+.++.......+ ...+..++|+|.
T Consensus 364 ~~Lt----~----~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~--~g~~~~p~Ws~~ 425 (428)
T PRK01029 364 YQLT----T----SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG--SGEKRFPSWGAF 425 (428)
T ss_pred EEcc----C----CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCcccCceecCC
Confidence 3332 1 2234677999999998875443 24688889888764433322 234556677664
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.45 E-value=4e-05 Score=91.82 Aligned_cols=116 Identities=17% Similarity=0.200 Sum_probs=74.7
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecC---CeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEE-EEECC
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKS 328 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~D---gtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~La-sgs~D 328 (1124)
..+.+.+ ..+|||||+.||..+.+ ..|.+|++++ +... .+. . ..+.+...+|||||+.|+ +.+.+
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~-g~~~-~l~----~----~~g~~~~~~~SpDG~~la~~~~~~ 264 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT-GRRE-QIT----N----FEGLNGAPAWSPDGSKLAFVLSKD 264 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-CCEE-Ecc----C----CCCCcCCeEECCCCCEEEEEEccC
Confidence 3455566 88999999999877644 3688889876 4332 222 1 234456789999999887 44555
Q ss_pred C--cEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee------eEEEEeCCCCeE
Q 001202 329 R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRL 385 (1124)
Q Consensus 329 g--~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~------~i~~W~~~~~~l 385 (1124)
| .|.+||+.++... .+..+ .....++.|+|++ +.++-.+ .+..++..+++.
T Consensus 265 g~~~Iy~~d~~~~~~~-~lt~~-~~~~~~~~~spDg----~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 265 GNPEIYVMDLASRQLS-RVTNH-PAIDTEPFWGKDG----RTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred CCceEEEEECCCCCeE-EcccC-CCCcCCeEECCCC----CEEEEEECCCCCceEEEEECCCCCE
Confidence 5 5778899887643 34433 3346678899988 4443211 455566666554
No 254
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.41 E-value=0.0001 Score=83.99 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=64.5
Q ss_pred CCCCeE-EEEEccCCCEEEE--EecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC---
Q 001202 255 GSGDAV-CASIAPEQQILAV--GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS--- 328 (1124)
Q Consensus 255 gh~~~v-~va~spdg~lLAs--Gs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D--- 328 (1124)
+..++| ..+|+|.++.+|+ |-.+.++.++|++. .....+. .+.=+.+-|||.++++..++-|
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~--Nl~~~~P----------e~~rNT~~fsp~~r~il~agF~nl~ 339 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG--NLRFYFP----------EQKRNTIFFSPHERYILFAGFDNLQ 339 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeeccccc--ceEEecC----------CcccccccccCcccEEEEecCCccc
Confidence 557888 9999999887665 45788999999875 3332222 3334678899999999887765
Q ss_pred CcEEEEEcCCCeeeE-EeccCCcCceeeeEEcCCC
Q 001202 329 RGLTVWSVSGCRLMS-TIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 329 g~I~vWdv~~~~l~~-tl~~h~~~~V~s~~~sp~~ 362 (1124)
|.+-+||..+.-.+. .+.+. ..+-+.|+|++
T Consensus 340 gni~i~~~~~rf~~~~~~~~~---n~s~~~wspd~ 371 (561)
T COG5354 340 GNIEIFDPAGRFKVAGAFNGL---NTSYCDWSPDG 371 (561)
T ss_pred cceEEeccCCceEEEEEeecC---CceEeeccCCc
Confidence 678999998875544 44432 23334456655
No 255
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=2.6e-06 Score=95.89 Aligned_cols=288 Identities=10% Similarity=0.072 Sum_probs=172.7
Q ss_pred cccccceEEEEee--cCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccC
Q 001202 128 FAEKGLSVSNIVS--DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF 205 (1124)
Q Consensus 128 ~~~~~~~v~~i~~--d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~ 205 (1124)
+..+.+.|..+.+ .++.++.|+.|-.+.+|.|.......--...+...++....+||+.+..+...+.+++.......
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~ 217 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL 217 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence 3445556665554 46778888888999999997653321111123334455567888888777766666655432222
Q ss_pred CCCceE--EEEEecCCcceEEEEecCC-cEEEEEecCCceEeeeccccc------eecCCCC---eE-EEEEccCCC-EE
Q 001202 206 PISSAI--IWLELCLPMRLLFVLYSNG-QLMSCSVSKKGLKLAEFIKID------KELGSGD---AV-CASIAPEQQ-IL 271 (1124)
Q Consensus 206 ~~~~~I--~~i~~s~~~~~~~~~s~dG-~~~~~~~~d~~i~~wd~~~~~------~~~gh~~---~v-~va~spdg~-lL 271 (1124)
..+... ..+.-+..-..-+++-|+. ..+.+++.|+.+.-.|..... +...+.. .. .++++|... .+
T Consensus 218 ~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~f 297 (559)
T KOG1334|consen 218 ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEF 297 (559)
T ss_pred cccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccc
Confidence 211111 1111111111223333433 334555566666555543221 1122233 33 889999876 79
Q ss_pred EEEecCCeEEEEEcCCCCc-----eeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCC--C-----
Q 001202 272 AVGTRRGVVELYDLAESAS-----LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG--C----- 339 (1124)
Q Consensus 272 AsGs~DgtV~vwd~~~~~~-----~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~--~----- 339 (1124)
|+|+.|.-+++||.....+ .+.++..... ..+..-.|+|++||.+|.-|.++..|-.|.+++-.- +
T Consensus 298 aVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl--~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 298 AVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL--VEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred ccCChhhhhhhhcccchhhccccchhhhcCCccc--cccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence 9999999999999764211 1122110000 001234489999999999888888888999996532 1
Q ss_pred -----ee-eEEeccCCc-CceeeeEE-cCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec---cceE
Q 001202 340 -----RL-MSTIRQISL-SSISSPIV-KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCC 405 (1124)
Q Consensus 340 -----~l-~~tl~~h~~-~~V~s~~~-sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~ 405 (1124)
.. -+.++||.. ..|..+-| .|.. ++++||+ .+.+|+-.+++++....+...-|-++.+ ...+
T Consensus 376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs----EyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvL 451 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRS----EYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVL 451 (559)
T ss_pred CcchhhccchhhcccccccccceeeeccCcc----ceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchh
Confidence 12 223677732 23555554 5555 8999998 8999999999998887775554567766 6678
Q ss_pred EeeccCCceeeeEeee
Q 001202 406 LNRGVSGMTYARQVIY 421 (1124)
Q Consensus 406 ~s~s~d~~v~~w~l~~ 421 (1124)
++.+-|..+++|.-..
T Consensus 452 AsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 452 ASSGIDHDVKIWTPLT 467 (559)
T ss_pred hccCCccceeeecCCc
Confidence 8999999999998543
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=5.8e-05 Score=89.94 Aligned_cols=132 Identities=14% Similarity=0.141 Sum_probs=66.9
Q ss_pred EEEEecCCcE---EEEEecCCceEee--eccccc--eecCCCCeE-EEEEccCCCEEEEEec-CC----eEEEEEcCCC-
Q 001202 223 LFVLYSNGQL---MSCSVSKKGLKLA--EFIKID--KELGSGDAV-CASIAPEQQILAVGTR-RG----VVELYDLAES- 288 (1124)
Q Consensus 223 ~~~~s~dG~~---~~~~~~d~~i~~w--d~~~~~--~~~gh~~~v-~va~spdg~lLAsGs~-Dg----tV~vwd~~~~- 288 (1124)
.-.++|||+. +++...++...+| +...++ ++....... ..+|||||+.||..+. +| .+..|+++..
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~ 268 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA 268 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC
Confidence 3356678763 2233334444444 433332 222222233 6799999999887653 23 3444666541
Q ss_pred CceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE-CCCcEEEEEc--CC-CeeeEEeccCCcCceeeeEEcCCC
Q 001202 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSV--SG-CRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 289 ~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs-~Dg~I~vWdv--~~-~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
+.....+. . + +.+.....+|||||+.|+..+ .+|...+|.+ .+ +.....+..+ ...+..+.|+|++
T Consensus 269 ~g~~~~lt--~-~----~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~-~~~~~~p~wSPDG 338 (428)
T PRK01029 269 IGKPRRLL--N-E----AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK-YRNSSCPAWSPDG 338 (428)
T ss_pred CCcceEee--c-C----CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC-CCCccceeECCCC
Confidence 11122222 0 1 223346689999999888766 4666666654 22 1112223222 2234455666665
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.35 E-value=7.5e-06 Score=100.01 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=111.2
Q ss_pred EEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeee
Q 001202 263 SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM 342 (1124)
Q Consensus 263 a~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~ 342 (1124)
-++++.-++++|+.-|.|.+|+........ .+. | |.|.+.++.||-||+++|+.|+|+++|+|++.+.+..
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l~----G----HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~ 210 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNKPI-RLK----G----HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL 210 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCCcc-eec----c----cCCceEEEEEccCCcEEEEEecCcceeeeeccccccc
Confidence 567777899999999999999987533333 233 5 9999999999999999999999999999999887654
Q ss_pred E-EeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcc-eEEEE--ec-cceEEeeccCCce
Q 001202 343 S-TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE-RVLIF--SF-GKCCLNRGVSGMT 414 (1124)
Q Consensus 343 ~-tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~-~v~~~--s~-~k~~~s~s~d~~v 414 (1124)
. +.-+| ...|..+.|+|+ .+++++ +.++|+.++.++- +..+|.. .++.+ +. .-..+|++.|+++
T Consensus 211 ~~~~fgH-saRvw~~~~~~n------~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 211 GCTGFGH-SARVWACCFLPN------RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTL 282 (967)
T ss_pred Ccccccc-cceeEEEEeccc------eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcch
Confidence 4 55567 789999999886 355554 8999987776654 5555543 34443 33 4467899999999
Q ss_pred eeeEeeecC
Q 001202 415 YARQVIYGE 423 (1124)
Q Consensus 415 ~~w~l~~~~ 423 (1124)
++|++.+..
T Consensus 283 k~~~l~~r~ 291 (967)
T KOG0974|consen 283 KLWDLNGRG 291 (967)
T ss_pred hhhhhhccc
Confidence 999976543
No 258
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.33 E-value=6.1e-05 Score=81.70 Aligned_cols=275 Identities=12% Similarity=0.149 Sum_probs=153.1
Q ss_pred eEEEEeeCCeEEEEEcCC-cEEEEecCCCce----eEEEE------eeChHHHhhhcceeEEEEecCCc--EEEEEeCCC
Q 001202 23 QIIYFKVNNGLLLIASPC-HIELWSSSQHKV----RLGKY------KRDSESVQREGENLQAVWSPDTK--LIAVVTSSL 89 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~~~-~l~IW~~~~~~~----~l~~~------~r~~~sl~~~G~~~~v~wSPDg~--~Lav~t~dg 89 (1124)
..|-|...|.+||++..+ .+.++.-.+..- -.+.+ .--.+|++-...+..+.|-+++. ...+.|.|.
T Consensus 29 s~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdk 108 (433)
T KOG1354|consen 29 SAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDK 108 (433)
T ss_pred eeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCc
Confidence 447899999999998764 677775542211 01111 01134555556678899999875 467788999
Q ss_pred eEEEEEeeecCcee--e-cCCCCC----CCcceee-------EEEEeeeeeecccccceEEEEeecCC-eEEEEecCCcE
Q 001202 90 YLHIFKVQITEKSI--Q-IGGKQP----SGLFFIK-------ISLVLNEQLPFAEKGLSVSNIVSDNK-HMLLGLSDGSL 154 (1124)
Q Consensus 90 ~l~i~~v~~~~~~~--~-~~~~~~----~~~~~~~-------~~~~~~~~~~~~~~~~~v~~i~~d~~-~llv~t~dg~v 154 (1124)
+|++|.+.-...+. + .+...+ ..+.++. ++..+. ++.-.++.-.+.+|+.+++ +.++..+|=.|
T Consensus 109 tiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~pr-Rv~aNaHtyhiNSIS~NsD~Et~lSADdLRI 187 (433)
T KOG1354|consen 109 TIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPR-RVYANAHTYHINSISVNSDKETFLSADDLRI 187 (433)
T ss_pred ceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeee-eeccccceeEeeeeeecCccceEeeccceee
Confidence 99999997543221 1 110000 0011111 111111 1222345566777776554 34455555566
Q ss_pred EEEeccCcc-ccceeec-cCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcc-eEEEEecCCc
Q 001202 155 YSISWKGEF-YGAFELV-HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR-LLFVLYSNGQ 231 (1124)
Q Consensus 155 ~~~~Wd~~~-~~~~~l~-~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~-~~~~~s~dG~ 231 (1124)
.+ |..+. .+.+.|. .+|.. ...-.--|++-+|+|... .++--++.|
T Consensus 188 NL--Wnlei~d~sFnIVDIKP~n----------------------------mEeLteVITsaEFhp~~cn~f~YSSSKG- 236 (433)
T KOG1354|consen 188 NL--WNLEIIDQSFNIVDIKPAN----------------------------MEELTEVITSAEFHPHHCNVFVYSSSKG- 236 (433)
T ss_pred ee--ccccccCCceeEEEccccC----------------------------HHHHHHHHhhhccCHhHccEEEEecCCC-
Confidence 55 66543 2333321 01110 001112355667887653 333333344
Q ss_pred EEEEEecCCceEeeeccccce------e-------------cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCce
Q 001202 232 LMSCSVSKKGLKLAEFIKIDK------E-------------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASL 291 (1124)
Q Consensus 232 ~~~~~~~d~~i~~wd~~~~~~------~-------------~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~ 291 (1124)
+|++-|...... + .+.-..| .+.|++.|+++++-.. -+|++||+....++
T Consensus 237 ---------tIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~p 306 (433)
T KOG1354|consen 237 ---------TIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKP 306 (433)
T ss_pred ---------cEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCc
Confidence 444444431100 0 1122345 7899999999998533 59999999776777
Q ss_pred eEEEeeccCCCC----CCCCCCe---EEEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001202 292 IRTVSLYDWGYS----MDDTGPV---SCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1124)
Q Consensus 292 ~~~l~~~~~g~~----~~h~g~V---~~lawSPDG~~Lasgs~Dg~I~vWdv~~~ 339 (1124)
+.+...++.-.+ .=....| ..++||-++.+++||+....+++++...|
T Consensus 307 v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 307 VETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 777765432100 0001222 45899999999999999999999996544
No 259
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.31 E-value=0.00014 Score=86.55 Aligned_cols=207 Identities=16% Similarity=0.130 Sum_probs=116.5
Q ss_pred eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC---CcEEEEEcCCCeeeEEeccCCcCceee
Q 001202 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGCRLMSTIRQISLSSISS 355 (1124)
Q Consensus 279 tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D---g~I~vWdv~~~~l~~tl~~h~~~~V~s 355 (1124)
.|.++|.+. ...+.+. . +.+.+.+.+|||||+.||.+..+ ..|.+|++.++...... .+ ...+.+
T Consensus 171 ~l~~~d~~g--~~~~~l~----~----~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~-~~~~~~ 238 (417)
T TIGR02800 171 ELQVADYDG--ANPQTIT----R----SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SF-PGMNGA 238 (417)
T ss_pred eEEEEcCCC--CCCEEee----c----CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cC-CCCccc
Confidence 466666543 3334343 2 55678999999999999987654 47999999887543322 22 234567
Q ss_pred eEEcCCCCCCcceEE-Eee-----eEEEEeCCCCeEEEEecCCcceE--EEEec-cceEEeec-cCCceeeeEeeecCCe
Q 001202 356 PIVKPNQDCKYEPLM-SGT-----SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRG-VSGMTYARQVIYGEDR 425 (1124)
Q Consensus 356 ~~~sp~~~~~~~~l~-sg~-----~i~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s-~d~~v~~w~l~~~~~~ 425 (1124)
++|+|++ +.++ +.. .+..|+..++........ .... ..+++ ++.++..+ .++...+|.+......
T Consensus 239 ~~~spDg----~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 239 PAFSPDG----SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG-PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred eEECCCC----CEEEEEECCCCCccEEEEECCCCCEEECCCC-CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 8999998 5443 221 577788877654433222 1111 34455 55554333 2333233322111110
Q ss_pred EEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCC---eE-EEEcCCCcEEEecCcCceeeeEEEE
Q 001202 426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG---LI-LYDIRQKKWRVFGDITQEQKIQSKG 501 (1124)
Q Consensus 426 l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG---~v-lwd~~sg~wk~f~~~~~e~~~~v~g 501 (1124)
......+...+...+|||||++++.++.++ .+ +||+.++.++....... ...
T Consensus 314 -------------------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-----~~~ 369 (417)
T TIGR02800 314 -------------------VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGL-----DES 369 (417)
T ss_pred -------------------EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCC-----CCC
Confidence 011111223455678999999999988876 67 99998877765543211 123
Q ss_pred EEec--CCEEEEEEEecCCCeEEEEEeeC
Q 001202 502 LLWL--GKIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 502 l~W~--~~~liv~~~~~~~~~~elrly~~ 528 (1124)
..|. +..++.++.. ++...+.+++.
T Consensus 370 p~~spdg~~l~~~~~~--~~~~~l~~~~~ 396 (417)
T TIGR02800 370 PSFAPNGRMILYATTR--GGRGVLGLVST 396 (417)
T ss_pred ceECCCCCEEEEEEeC--CCcEEEEEEEC
Confidence 3564 4456655432 33345666654
No 260
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.31 E-value=8.4e-05 Score=85.46 Aligned_cols=238 Identities=19% Similarity=0.178 Sum_probs=146.4
Q ss_pred cCCCCeE-EEEEccCCCE-EEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcE
Q 001202 254 LGSGDAV-CASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~l-LAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I 331 (1124)
.++..+. .+.++|||++ +|+|..--.|++||+.. -++...-. - ....|.-.-.|-|-+.++---.|++|
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan-LSLKFERh----l----Dae~V~feiLsDD~SK~v~L~~DR~I 118 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN-LSLKFERH----L----DAEVVDFEILSDDYSKSVFLQNDRTI 118 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEccc-ceeeeeec----c----cccceeEEEeccchhhheEeecCcee
Confidence 3566666 8999999997 78888889999999976 33221111 0 23456666677777777777778888
Q ss_pred EEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEE--eeeEEEEeCCCCeEEEEecCCcceEEEEec---cceEE
Q 001202 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS--GTSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCL 406 (1124)
Q Consensus 332 ~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~s--g~~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~ 406 (1124)
-+-.-.|..-...+.-.+ .+++++... | +.+.. |..+--.+.+.|+.+....-....+.+++. -..++
T Consensus 119 efHak~G~hy~~RIP~~G----RDm~y~~~s-c--Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla 191 (703)
T KOG2321|consen 119 EFHAKYGRHYRTRIPKFG----RDMKYHKPS-C--DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLA 191 (703)
T ss_pred eehhhcCeeeeeecCcCC----ccccccCCC-c--cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEE
Confidence 877766644322222211 122222111 1 33333 336667788888776655444455655544 44566
Q ss_pred eeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccC-----CCceEEEEEccCCCEEEEEcCCCeE-EEEc
Q 001202 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ-----NWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 407 s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~-----~~~I~~va~SpdG~~lAvag~dG~v-lwd~ 480 (1124)
.|..+|.+..||-.....--.+ .++.....| .-.|+++.|+.||-.+++|+..|.+ +||+
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~l--------------~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGTL--------------DAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL 257 (703)
T ss_pred ecccCceEEEecchhhhhheee--------------ecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence 7777999999996543221001 111111112 2249999999999999999999999 9999
Q ss_pred CCCcEEEecCcCceeeeEEEEEEecC----CEEEEEEEecCCCeEEEEEeeCC
Q 001202 481 RQKKWRVFGDITQEQKIQSKGLLWLG----KIIVVCNYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 481 ~sg~wk~f~~~~~e~~~~v~gl~W~~----~~liv~~~~~~~~~~elrly~~~ 529 (1124)
++.+=-+..+ |...+.+..+.|.. +.++++ +..-+++|+..
T Consensus 258 Ra~~pl~~kd--h~~e~pi~~l~~~~~~~q~~v~S~------Dk~~~kiWd~~ 302 (703)
T KOG2321|consen 258 RASKPLLVKD--HGYELPIKKLDWQDTDQQNKVVSM------DKRILKIWDEC 302 (703)
T ss_pred ccCCceeecc--cCCccceeeecccccCCCceEEec------chHHhhhcccc
Confidence 9876433333 34446677889953 344443 23467888774
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.30 E-value=0.0001 Score=88.60 Aligned_cols=116 Identities=15% Similarity=0.153 Sum_probs=72.6
Q ss_pred CCCCeE-EEEEccCCCEEEEEec-CC--eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEE-EECCC
Q 001202 255 GSGDAV-CASIAPEQQILAVGTR-RG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-GWKSR 329 (1124)
Q Consensus 255 gh~~~v-~va~spdg~lLAsGs~-Dg--tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Las-gs~Dg 329 (1124)
.+...+ +.+|||||+.||..+. ++ .|.+||+.+ ++. ..+. . -.+.....+|||||+.|+. .+.+|
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t-g~~-~~lt----~----~~g~~~~~~wSPDG~~La~~~~~~g 284 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT-QVR-EKVT----S----FPGINGAPRFSPDGKKLALVLSKDG 284 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCC-CCe-EEec----C----CCCCcCCeeECCCCCEEEEEEeCCC
Confidence 344556 8899999999987654 33 577778765 432 2222 1 1233456899999998875 45566
Q ss_pred c--EEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee------eEEEEeCCCCeEE
Q 001202 330 G--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLY 386 (1124)
Q Consensus 330 ~--I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~------~i~~W~~~~~~l~ 386 (1124)
. |.+||+.++.. ..+..+ ......++|+|++ +.++..+ .+..++..+++..
T Consensus 285 ~~~Iy~~dl~tg~~-~~lt~~-~~~~~~p~wSpDG----~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 285 QPEIYVVDIATKAL-TRITRH-RAIDTEPSWHPDG----KSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred CeEEEEEECCCCCe-EECccC-CCCccceEECCCC----CEEEEEECCCCCceEEEEECCCCCEE
Confidence 5 77778887764 334333 3456778999998 5443211 4455566655543
No 262
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=3.3e-05 Score=85.29 Aligned_cols=143 Identities=20% Similarity=0.220 Sum_probs=109.0
Q ss_pred EEEEEecC--CceEeeecccccee----------cCCCCeE---EEEEccC--CCEEEEEecCCeEEEEEcCCCCceeEE
Q 001202 232 LMSCSVSK--KGLKLAEFIKIDKE----------LGSGDAV---CASIAPE--QQILAVGTRRGVVELYDLAESASLIRT 294 (1124)
Q Consensus 232 ~~~~~~~d--~~i~~wd~~~~~~~----------~gh~~~v---~va~spd--g~lLAsGs~DgtV~vwd~~~~~~~~~~ 294 (1124)
++++|+.. ..+++||....++. .+-.-+| .+.|-+. ...+|+++.-+.||+||.....+++.+
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 34445544 56778887655432 1222233 6678777 789999999999999999875566666
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEE-eccCCcCceeeeEEcCCCCCCcceEEEee
Q 001202 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST-IRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1124)
Q Consensus 295 l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~t-l~~h~~~~V~s~~~sp~~~~~~~~l~sg~ 373 (1124)
+.. -..+++++.-.|+|+.+.+|..-|.+..+|..++.+... +.+. ..+++++..+|.. ..+++++
T Consensus 243 fd~--------~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~-tGsirsih~hp~~----~~las~G 309 (412)
T KOG3881|consen 243 FDF--------LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI-TGSIRSIHCHPTH----PVLASCG 309 (412)
T ss_pred ecc--------ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc-cCCcceEEEcCCC----ceEEeec
Confidence 652 356799999999999999999999999999999887655 7776 6789999999987 7888776
Q ss_pred ---eEEEEeCCCCeEEE
Q 001202 374 ---SMMQWDEYGYRLYA 387 (1124)
Q Consensus 374 ---~i~~W~~~~~~l~~ 387 (1124)
.++++|.++.+++.
T Consensus 310 LDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 310 LDRYVRIHDIKTRKLLH 326 (412)
T ss_pred cceeEEEeecccchhhh
Confidence 78888888865543
No 263
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=4e-05 Score=84.58 Aligned_cols=216 Identities=12% Similarity=0.068 Sum_probs=134.3
Q ss_pred eeCCeEEEEEcCCcEEEEecCCCc---eeEEEEeeChHHHhhhcceeEEEEecCCcEE-EEEeCC--CeEEEEEeeecCc
Q 001202 28 KVNNGLLLIASPCHIELWSSSQHK---VRLGKYKRDSESVQREGENLQAVWSPDTKLI-AVVTSS--LYLHIFKVQITEK 101 (1124)
Q Consensus 28 S~dg~llA~~~~~~l~IW~~~~~~---~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~L-av~t~d--g~l~i~~v~~~~~ 101 (1124)
-.||.+++..+++.+++|+..-+. -++.. ++..+....+.=.|....| |+|+.. +.+.|||++.+ +
T Consensus 113 ~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~-------la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~ 184 (412)
T KOG3881|consen 113 LADGTLITCVSSGNLQVRHDKSGDLHSSKLIK-------LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-K 184 (412)
T ss_pred hcCCEEEEEecCCcEEEEeccCCcccccccee-------eecCCceeeeccCCCCCceEecCchhcccceeeeecccc-e
Confidence 456888888888999999984111 11111 2223445566667755554 557777 78999999877 4
Q ss_pred eeecC-CCCCCCcceeeEEEEeeeeeecccccceEEEEeec--CCeEEEEecCCcEEEEeccCccccceeeccCCCCccc
Q 001202 102 SIQIG-GKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (1124)
Q Consensus 102 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d--~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~ 178 (1124)
+++.. +-.+..+.+....|... + -|.+. +..++.+|.-+.+++|+-. ..
T Consensus 185 qiw~aKNvpnD~L~LrVPvW~td-----------i-~Fl~g~~~~~fat~T~~hqvR~YDt~--~q-------------- 236 (412)
T KOG3881|consen 185 QIWSAKNVPNDRLGLRVPVWITD-----------I-RFLEGSPNYKFATITRYHQVRLYDTR--HQ-------------- 236 (412)
T ss_pred eeeeccCCCCccccceeeeeecc-----------c-eecCCCCCceEEEEecceeEEEecCc--cc--------------
Confidence 44322 22222122211122110 0 11112 5678888888888886422 11
Q ss_pred cccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee----c
Q 001202 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----L 254 (1124)
Q Consensus 179 i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~----~ 254 (1124)
.-+|.+++|......++...|+|+.+.++...+.+..+|...++.. .
T Consensus 237 -----------------------------RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k 287 (412)
T KOG3881|consen 237 -----------------------------RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK 287 (412)
T ss_pred -----------------------------CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccC
Confidence 1223333343333446667788999888888888888888766432 5
Q ss_pred CCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCC
Q 001202 255 GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD 318 (1124)
Q Consensus 255 gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPD 318 (1124)
|..+++ ++-.+|.++++|+++-|..|||+|+++ .+++....+ ....++|-+.++
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~kt-rkll~kvYv---------Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT-RKLLHKVYV---------KSRLTFILLRDD 342 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeeccc-chhhhhhhh---------hccccEEEecCC
Confidence 667788 999999999999999999999999988 666554432 223566666554
No 264
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.22 E-value=0.00017 Score=86.36 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=88.4
Q ss_pred eEEEEecCCcEEEEEecC---CceEeeecccccee--cCCCCeE-EEEEccCCCEEEE-EecCC--eEEEEEcCCCCcee
Q 001202 222 LLFVLYSNGQLMSCSVSK---KGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAV-GTRRG--VVELYDLAESASLI 292 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d---~~i~~wd~~~~~~~--~gh~~~v-~va~spdg~lLAs-Gs~Dg--tV~vwd~~~~~~~~ 292 (1124)
....++|||+.++..+.+ ..+.+|+..+++.. ....+.. ..+|||||+.||. .+.+| .|.+||+++ +. .
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~-~~-~ 279 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS-RQ-L 279 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC-CC-e
Confidence 345666888877665532 24566676655332 2222334 7899999998885 44555 577778775 43 2
Q ss_pred EEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC-CC--cEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceE
Q 001202 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (1124)
Q Consensus 293 ~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~-Dg--~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l 369 (1124)
..+. . +.+......|||||+.|+..+. +| .|.++++.++.... +... ......+.|+|++ +.+
T Consensus 280 ~~lt----~----~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~-~~~~~~~~~Spdg----~~i 345 (430)
T PRK00178 280 SRVT----N----HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFV-GNYNARPRLSADG----KTL 345 (430)
T ss_pred EEcc----c----CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC-CCCccceEECCCC----CEE
Confidence 3333 1 3445667899999998876664 33 46667777765432 2211 1233457889988 444
Q ss_pred EEee------eEEEEeCCCCeEEE
Q 001202 370 MSGT------SMMQWDEYGYRLYA 387 (1124)
Q Consensus 370 ~sg~------~i~~W~~~~~~l~~ 387 (1124)
+-.. .+..|+..+++...
T Consensus 346 ~~~~~~~~~~~l~~~dl~tg~~~~ 369 (430)
T PRK00178 346 VMVHRQDGNFHVAAQDLQRGSVRI 369 (430)
T ss_pred EEEEccCCceEEEEEECCCCCEEE
Confidence 3211 45567777665443
No 265
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=0.00056 Score=78.60 Aligned_cols=307 Identities=13% Similarity=0.132 Sum_probs=155.1
Q ss_pred CceEEEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeC-----------CC
Q 001202 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS-----------SL 89 (1124)
Q Consensus 21 ~~~iv~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~-----------dg 89 (1124)
.+-.|.+||-|.+|++.-..+|.+|-.. . +.|... + -|-.+.-+.|||.-++|++=+. ..
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~GI~lWGG~-~------f~r~~R-F-~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQGIALWGGE-S------FDRIQR-F-YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeeeEEecCCceEEEEEeccceeeecCc-c------HHHHHh-c-cCCCceeeecCCccceEEEecCCccccCcccCCCc
Confidence 4577999999999999999999999774 2 222111 1 1344567999999999998542 25
Q ss_pred eEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceee
Q 001202 90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFEL 169 (1124)
Q Consensus 90 ~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l 169 (1124)
.++|||+.+|...............-+.+ -++.|+++++.-+.|+ |.++. ... -.-+
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~f------------------rWS~DdKy~Arm~~~s-isIyE--tps--f~ll 339 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIF------------------RWSHDDKYFARMTGNS-ISIYE--TPS--FMLL 339 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceE------------------EeccCCceeEEeccce-EEEEe--cCc--eeee
Confidence 68999999886432222111111111222 3333444444333333 33321 111 1112
Q ss_pred ccCCCCccccccccccCCCC-cccccC-CCCe-eeccc--CCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCc---
Q 001202 170 VHSSNDSSVAALSHHFPSNG-LASVDT-SGAF-VSDHK--FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG--- 241 (1124)
Q Consensus 170 ~~~~~~~~~i~~i~fs~~~q-l~s~~~-~~~~-~~~~~--~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~--- 241 (1124)
+.++.....|+...+++..+ |+...+ ..+. .+..+ ...+..|+..-...-.+.-+-.-.+|.++.......+
T Consensus 340 d~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~ 419 (698)
T KOG2314|consen 340 DKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSK 419 (698)
T ss_pred cccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccc
Confidence 22333334445444555444 222221 1110 00001 1222222221111111123333456666665443221
Q ss_pred -------eEeeeccccc---eecCCCCeE-EEEEccCCCEEEEEec---CCeEEEEEcCCCCc---eeEEEeeccCCCCC
Q 001202 242 -------LKLAEFIKID---KELGSGDAV-CASIAPEQQILAVGTR---RGVVELYDLAESAS---LIRTVSLYDWGYSM 304 (1124)
Q Consensus 242 -------i~~wd~~~~~---~~~gh~~~v-~va~spdg~lLAsGs~---DgtV~vwd~~~~~~---~~~~l~~~~~g~~~ 304 (1124)
+.+....... ......+.+ ..+|-|.|..+|+-+. -.++++|.+.+... ++..+.
T Consensus 420 ~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-------- 491 (698)
T KOG2314|consen 420 VKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-------- 491 (698)
T ss_pred ccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--------
Confidence 1111111100 002345666 8899999988776543 35789999874222 222222
Q ss_pred CCCCCeEEEEECCCCCEEEEEE---CCCcEEEEEcCCCeeeEEe-ccCCcCceeeeEEcCCCCCCcceEEEeeeE
Q 001202 305 DDTGPVSCIAWTPDNSAFAVGW---KSRGLTVWSVSGCRLMSTI-RQISLSSISSPIVKPNQDCKYEPLMSGTSM 375 (1124)
Q Consensus 305 ~h~g~V~~lawSPDG~~Lasgs---~Dg~I~vWdv~~~~l~~tl-~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i 375 (1124)
....+.+.|||.|+.++++. ..|.+..+|..-..+..+- ..| ...+.+.|.|.| .+++++++.
T Consensus 492 --k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh--~~at~veWDPtG----RYvvT~ss~ 558 (698)
T KOG2314|consen 492 --KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH--FAATEVEWDPTG----RYVVTSSSS 558 (698)
T ss_pred --ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc--cccccceECCCC----CEEEEeeeh
Confidence 23367899999999888764 4678888888642222111 112 234556677776 666655543
No 266
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=0.00032 Score=81.01 Aligned_cols=70 Identities=23% Similarity=0.518 Sum_probs=55.9
Q ss_pred EEEEccCCCEEEEEec---CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC------CCcE
Q 001202 261 CASIAPEQQILAVGTR---RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK------SRGL 331 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~---DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~------Dg~I 331 (1124)
++-|||.|++|+.++- -|.|.|||+.+ .+++..+. -.+ -+-+.|+|||.++.|+.. |.++
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~---------a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~ 384 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFK---------AAN-TTVFEWSPDGEYFLTATTAPRLRVDNGI 384 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccc---------cCC-ceEEEEcCCCcEEEEEeccccEEecCCe
Confidence 8999999999888764 58999999987 66665554 122 356799999999988864 7899
Q ss_pred EEEEcCCCee
Q 001202 332 TVWSVSGCRL 341 (1124)
Q Consensus 332 ~vWdv~~~~l 341 (1124)
+||++.|..+
T Consensus 385 KiwhytG~~l 394 (566)
T KOG2315|consen 385 KIWHYTGSLL 394 (566)
T ss_pred EEEEecCcee
Confidence 9999998764
No 267
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.13 E-value=0.00021 Score=77.79 Aligned_cols=240 Identities=15% Similarity=0.251 Sum_probs=130.8
Q ss_pred eeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEe
Q 001202 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL 149 (1124)
Q Consensus 70 ~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t 149 (1124)
|.++..-|--.-+.+++.|.++++|--..... |-+ ++...++. ..++.+.......+++|-
T Consensus 27 vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q--~wp--------------sI~~~mP~---~~~~~~y~~e~~~L~vg~ 87 (404)
T KOG1409|consen 27 VNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ--YWP--------------SIYHYMPS---PCSAMEYVSESRRLYVGQ 87 (404)
T ss_pred hhhheeccCCCCeEEccccceeeeEEeccccc--cCc--------------hhhhhCCC---CceEeeeeccceEEEEEE
Confidence 45555666667788899999999995322111 000 00000110 012222223446788899
Q ss_pred cCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecC
Q 001202 150 SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN 229 (1124)
Q Consensus 150 ~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~d 229 (1124)
.+|++.-++-....+...- ...+..|...+..+.|+-...
T Consensus 88 ~ngtvtefs~sedfnkm~~--------------------------------~r~~~~h~~~v~~~if~~~~e-------- 127 (404)
T KOG1409|consen 88 DNGTVTEFALSEDFNKMTF--------------------------------LKDYLAHQARVSAIVFSLTHE-------- 127 (404)
T ss_pred ecceEEEEEhhhhhhhcch--------------------------------hhhhhhhhcceeeEEecCCce--------
Confidence 9998877655433322110 012345566666655553332
Q ss_pred CcEEEEEecCCceEeeeccccceecCCCCeEEEEEccCC--CEEEEEecCCeEEEEEcCCC-CceeEEEeeccCCCCCCC
Q 001202 230 GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQ--QILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDD 306 (1124)
Q Consensus 230 G~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v~va~spdg--~lLAsGs~DgtV~vwd~~~~-~~~~~~l~~~~~g~~~~h 306 (1124)
.+++++.|..+ .|......+..||---.|.+..++. ...-+|...|.|.+-.+... -.++.++. | |
T Consensus 128 --~V~s~~~dk~~-~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~----~----h 196 (404)
T KOG1409|consen 128 --WVLSTGKDKQF-AWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFN----G----H 196 (404)
T ss_pred --eEEEeccccce-EEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEc----C----c
Confidence 23333333322 2333222111232211122222221 13445666677766555441 24455555 5 9
Q ss_pred CCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCee-eEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCC
Q 001202 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL-MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 382 (1124)
Q Consensus 307 ~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l-~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~ 382 (1124)
.++|.+++|.|....|.+|..|..+.+||+.+++- .+.+.+| ...|..+..-+.. ..+.|.. .+++|+.+.
T Consensus 197 ~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh-~~kV~~l~~~~~t----~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 197 TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH-NDKVQALSYAQHT----RQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccc-hhhhhhhhhhhhh----eeeeeccCCCeEEEEeccc
Confidence 99999999999999999999999999999987654 3455566 5556555443322 3344433 788998865
Q ss_pred Ce
Q 001202 383 YR 384 (1124)
Q Consensus 383 ~~ 384 (1124)
.+
T Consensus 272 ~r 273 (404)
T KOG1409|consen 272 KR 273 (404)
T ss_pred ee
Confidence 44
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.13 E-value=0.00082 Score=78.97 Aligned_cols=218 Identities=15% Similarity=0.147 Sum_probs=130.6
Q ss_pred hhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeE
Q 001202 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~l 145 (1124)
.++...++.|...+.+||+|+.||.+++-++.+........ ++..++ .++....+.++.++|..+..+....
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~-----glaa~s---nLsmNQtLeGH~~sV~vvTWNe~~Q 84 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKS-----GLAAAS---NLSMNQTLEGHNASVMVVTWNENNQ 84 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccc-----cccccc---ccchhhhhccCcceEEEEEeccccc
Confidence 45666799999999999999999999999997654221111 110000 1223335667777777666655443
Q ss_pred EEEec--CCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceE
Q 001202 146 LLGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1124)
Q Consensus 146 lv~t~--dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~ 223 (1124)
-.+|+ +|.|.+ |---.+.-.. ......+++.|.+|.|+.++...
T Consensus 85 KLTtSDt~GlIiV--WmlykgsW~E--------------------------------EMiNnRnKSvV~SmsWn~dG~kI 130 (1189)
T KOG2041|consen 85 KLTTSDTSGLIIV--WMLYKGSWCE--------------------------------EMINNRNKSVVVSMSWNLDGTKI 130 (1189)
T ss_pred cccccCCCceEEE--EeeecccHHH--------------------------------HHhhCcCccEEEEEEEcCCCcEE
Confidence 33343 454444 3211110000 00123457788999999988888
Q ss_pred EEEecCCcEEEEEecCCceEeeeccccceecCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCC------ceeEEEee
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA------SLIRTVSL 297 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~------~~~~~l~~ 297 (1124)
+.+..||.+++ |+-|+. ++|.-. +.| .....+-||+|.+.+..+-.+|.+.+||....- .+.-...
T Consensus 131 cIvYeDGavIV-GsvdGN-RIwgKe----Lkg-~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~t- 202 (1189)
T KOG2041|consen 131 CIVYEDGAVIV-GSVDGN-RIWGKE----LKG-QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGT- 202 (1189)
T ss_pred EEEEccCCEEE-Eeeccc-eecchh----cch-heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeee-
Confidence 88889998766 344432 455322 122 112268899999999999999999999975411 1111111
Q ss_pred ccCCCCCCCCCCeEEEEEC--------CCCCEEEEEECCCcEEEEEc
Q 001202 298 YDWGYSMDDTGPVSCIAWT--------PDNSAFAVGWKSRGLTVWSV 336 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~lawS--------PDG~~Lasgs~Dg~I~vWdv 336 (1124)
|........+..+.|. ||--+||++.++|.+.|-.-
T Consensus 203 ---g~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 203 ---GIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred ---eeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 1111111225566663 57789999999988876543
No 269
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.13 E-value=0.00023 Score=75.08 Aligned_cols=208 Identities=10% Similarity=0.056 Sum_probs=116.2
Q ss_pred eEEEEecCC-----cEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeE
Q 001202 71 LQAVWSPDT-----KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1124)
Q Consensus 71 ~~v~wSPDg-----~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~l 145 (1124)
..+.|.|-+ -+||.+++.|.+.+|...+.+.-++.-... ..+ +.+ +....-....+
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~s------------nn~-v~~------~~r~cd~~~~~ 131 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVS------------NND-VTL------VKRYCDLKFPL 131 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeeccc------------ccc-hhh------hhhhcccccce
Confidence 457777754 579999999999999988654322211000 000 000 11111123457
Q ss_pred EEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEE
Q 001202 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (1124)
Q Consensus 146 lv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~ 225 (1124)
.+++.|.+++.+..++...+... .-....+.++.++++..+.+.
T Consensus 132 ~i~sndht~k~~~~~~~s~~~~~------------------------------------h~~~~~~ns~~~snd~~~~~~ 175 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSNKFAV------------------------------------HNQNLTQNSLHYSNDPSWGSS 175 (344)
T ss_pred eeccCCcceeEEEEecCccccee------------------------------------eccccceeeeEEcCCCceEEE
Confidence 77777888887766655432210 000122444555544444444
Q ss_pred EecCCcEEEEEecCCceEeeeccccceecCCCC-eEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCC
Q 001202 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGD-AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (1124)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~-~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~ 304 (1124)
+....++.....++..-.+-.. .....++ ..|.+||.....+|++.+||++.|||+...+.+..+.... .+
T Consensus 176 Vgds~~Vf~y~id~~sey~~~~----~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst----rp 247 (344)
T KOG4532|consen 176 VGDSRRVFRYAIDDESEYIENI----YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISST----RP 247 (344)
T ss_pred ecCCCcceEEEeCCccceeeee----EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhccc----CC
Confidence 4333333333333222221110 0122233 4499999999999999999999999998755554444322 23
Q ss_pred CCCCCeEEEEECCCCC--EEEEEECCCcEEEEEcCCCee
Q 001202 305 DDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGCRL 341 (1124)
Q Consensus 305 ~h~g~V~~lawSPDG~--~Lasgs~Dg~I~vWdv~~~~l 341 (1124)
.|.|++..+.|||-|. .|.-.-.-+.+-|-|+.+..-
T Consensus 248 ~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 248 HHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred CCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 4999999999998654 333332335677777776543
No 270
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.11 E-value=7.4e-06 Score=62.10 Aligned_cols=38 Identities=32% Similarity=0.715 Sum_probs=33.9
Q ss_pred ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEE
Q 001202 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1124)
Q Consensus 290 ~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWd 335 (1124)
+++.++. + |.++|++|+|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~----~----h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFR----G----HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEE----S----SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEc----C----CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3455666 5 999999999999999999999999999997
No 271
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.10 E-value=0.013 Score=64.99 Aligned_cols=249 Identities=11% Similarity=0.127 Sum_probs=131.1
Q ss_pred EEEEEc---CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCC---CeEEEEEeeecCceeecC
Q 001202 33 LLLIAS---PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIG 106 (1124)
Q Consensus 33 llA~~~---~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d---g~l~i~~v~~~~~~~~~~ 106 (1124)
++++-+ +..|++|+...+...+... +-+.+-+..+-++|+|+++.|.++-.+ |.+--|.++.....+..-
T Consensus 6 YiGtyT~~~s~gI~v~~ld~~~g~l~~~----~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l 81 (346)
T COG2706 6 YIGTYTKRESQGIYVFNLDTKTGELSLL----QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL 81 (346)
T ss_pred EEeeecccCCCceEEEEEeCcccccchh----hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe
Confidence 555655 5579999987332222211 223445667889999999999887655 778888887532222211
Q ss_pred CCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEe-cCCcEEEEeccCccccceeeccCCCCcccccccccc
Q 001202 107 GKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHF 185 (1124)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t-~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs 185 (1124)
++ ..+.+....=.|+..++..++++. ..|.|.++..... +... . .+..+...
T Consensus 82 n~-----------------~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d--G~l~------~--~v~~~~h~ 134 (346)
T COG2706 82 NR-----------------QTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD--GSLQ------P--VVQVVKHT 134 (346)
T ss_pred ec-----------------cccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccC--Cccc------c--ceeeeecC
Confidence 11 111111111123344555666655 4567766544322 1110 0 00000000
Q ss_pred CCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEec-CCceEeeecccccee-------cCCC
Q 001202 186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE-------LGSG 257 (1124)
Q Consensus 186 ~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~-d~~i~~wd~~~~~~~-------~gh~ 257 (1124)
...+ .-.+.... ..++.++|||+++++..- ...+.+++...++.. ..-.
T Consensus 135 -------g~~p------~~rQ~~~h----------~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~ 191 (346)
T COG2706 135 -------GSGP------HERQESPH----------VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA 191 (346)
T ss_pred -------CCCC------CccccCCc----------cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCC
Confidence 0000 00000111 135677789988776542 233455555433221 1112
Q ss_pred CeEEEEEccCCCEEEEEe-cCCeEEEEEcCCCCceeEEEe---eccCCCCCCCCCCeEEEEECCCCCEEEEEECC-CcEE
Q 001202 258 DAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVS---LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLT 332 (1124)
Q Consensus 258 ~~v~va~spdg~lLAsGs-~DgtV~vwd~~~~~~~~~~l~---~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D-g~I~ 332 (1124)
++-.++|+|++++.-+-+ -+++|.+|..+........+. .....+ .-+.....|..||||++|.++.+- ..|.
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF--~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF--TGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc--CCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 333899999999865544 599999999987433333332 211111 124456789999999999887652 3677
Q ss_pred EEEcC
Q 001202 333 VWSVS 337 (1124)
Q Consensus 333 vWdv~ 337 (1124)
++.+.
T Consensus 270 ~f~V~ 274 (346)
T COG2706 270 VFSVD 274 (346)
T ss_pred EEEEc
Confidence 77663
No 272
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=0.002 Score=74.20 Aligned_cols=305 Identities=16% Similarity=0.217 Sum_probs=166.2
Q ss_pred EEEEecCCcEEEEEecCCceEeeecccccee--cCCCCeEEEEEccCCCEEEEEec-----------CCeEEEEEcCCCC
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTR-----------RGVVELYDLAESA 289 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~--~gh~~~v~va~spdg~lLAsGs~-----------DgtV~vwd~~~~~ 289 (1124)
.+.+||-|.++++ .-...|.+|-+.+..+. ..|.+.--+.|||..++|++=+. ...+.|||+.+ |
T Consensus 215 yv~wSP~GTYL~t-~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t-G 292 (698)
T KOG2314|consen 215 YVRWSPKGTYLVT-FHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT-G 292 (698)
T ss_pred eEEecCCceEEEE-EeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc-c
Confidence 3445577776664 34445778877654433 35655449999999999998652 25789999998 8
Q ss_pred ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeE--EeccCCcCceeeeEEcCCCCCCcc
Q 001202 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS--TIRQISLSSISSPIVKPNQDCKYE 367 (1124)
Q Consensus 290 ~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~--tl~~h~~~~V~s~~~sp~~~~~~~ 367 (1124)
...+.+...+-+ .-.-.-..||.|++++|--..| +|.|++...-.++. +++ -+.|....|+|.+ +
T Consensus 293 ~lkrsF~~~~~~-----~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslk---i~gIr~FswsP~~----~ 359 (698)
T KOG2314|consen 293 LLKRSFPVIKSP-----YLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLK---ISGIRDFSWSPTS----N 359 (698)
T ss_pred chhcceeccCCC-----ccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccC---CccccCcccCCCc----c
Confidence 777777643211 1112347899999999987775 89999987643321 221 3456666677765 4
Q ss_pred eEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCC---ceeeeEeeecCCeEEEeecCC-Cc--------
Q 001202 368 PLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSG---MTYARQVIYGEDRLLVVQSED-TD-------- 435 (1124)
Q Consensus 368 ~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~---~v~~w~l~~~~~~l~l~~~~~-~~-------- 435 (1124)
.++ .|.+++...-.. -.+..++-.+.+-+.+.-+ .-..|. ...+++.+....- ..
T Consensus 360 llA------Ywtpe~~~~par-----vtL~evPs~~~iRt~nlfnVsDckLhWQ--k~gdyLcvkvdR~tK~~~~g~f~n 426 (698)
T KOG2314|consen 360 LLA------YWTPETNNIPAR-----VTLMEVPSKREIRTKNLFNVSDCKLHWQ--KSGDYLCVKVDRHTKSKVKGQFSN 426 (698)
T ss_pred eEE------EEcccccCCcce-----EEEEecCccceeeeccceeeeccEEEec--cCCcEEEEEEEeeccccccceEee
Confidence 333 576665432111 0112222222221111000 001121 2233333332110 00
Q ss_pred --cceeeecccceeeccCCCceEEEEEccCCCEEEEEcCC---CeE-EEEcC--CCcEEEecCcCceeeeEEEEEEec--
Q 001202 436 --ELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH---GLI-LYDIR--QKKWRVFGDITQEQKIQSKGLLWL-- 505 (1124)
Q Consensus 436 --~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~d---G~v-lwd~~--sg~wk~f~~~~~e~~~~v~gl~W~-- 505 (1124)
......-++|..-..-..+|-..+|-|.|..+|+-+.. .++ .|.+. .++|++...... -.+..+.|.
T Consensus 427 ~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPk 503 (698)
T KOG2314|consen 427 LEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPK 503 (698)
T ss_pred EEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCC
Confidence 01112223555445556678889999999888754432 355 88776 345655432211 235577886
Q ss_pred CCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEeecCCccEEEEeeCCEEEEEE
Q 001202 506 GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTY 560 (1124)
Q Consensus 506 ~~~liv~~~~~~~~~~elrly~~~~ld~~~~l~~~~l~s~~l~l~~~~~~llv~~ 560 (1124)
|.++++++.. +....+.+|+.+.-+-....+..-....-+--++.|.|++..+
T Consensus 504 G~fvvva~l~--s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 504 GRFVVVAALV--SRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred CcEEEEEEec--ccccceEEEecchhhhhhccCccccccccceECCCCCEEEEee
Confidence 5678777554 3456789998841111111111111223455578888887744
No 273
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.05 E-value=0.00033 Score=76.29 Aligned_cols=231 Identities=12% Similarity=0.110 Sum_probs=146.8
Q ss_pred EEEecCCcEEEEEecCCceEeeecc-ccceec--CCC--CeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEee
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFI-KIDKEL--GSG--DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~-~~~~~~--gh~--~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~ 297 (1124)
+..-|-..-+++.+.|.++++|--. .++.|. -|. .++ +++++++.+.|.+|-.+|++.=+.+...-......+.
T Consensus 30 ~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~ 109 (404)
T KOG1409|consen 30 AILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKD 109 (404)
T ss_pred heeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhh
Confidence 3333444456777889999999544 344442 232 344 8899999999999999999998887652221111110
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcC-CCeeeEE--eccCCcCceeeeEEcCCCCCCcceEEEeee
Q 001202 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMST--IRQISLSSISSPIVKPNQDCKYEPLMSGTS 374 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~-~~~l~~t--l~~h~~~~V~s~~~sp~~~~~~~~l~sg~~ 374 (1124)
-..|.++|..+-|+-.-..+++.+.|..+. |... .+..+.. +..-.......+.+--.|+. ..-++
T Consensus 110 -----~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~-----~gqvt 178 (404)
T KOG1409|consen 110 -----YLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVGDH-----SGQIT 178 (404)
T ss_pred -----hhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEEeccc-----ccceE
Confidence 113999999999998889999999997764 5442 2211100 00000000000000001100 00014
Q ss_pred EEEEeCCCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccC
Q 001202 375 MMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (1124)
Q Consensus 375 i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~ 451 (1124)
.......+-.++....+|.+.+..... .+.+.++..|..+..|++.-.... .....+|
T Consensus 179 ~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-------------------~~el~gh 239 (404)
T KOG1409|consen 179 MLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-------------------AYELQGH 239 (404)
T ss_pred EEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-------------------eeeeccc
Confidence 444556677778888888888865555 456778999999999997544331 2345678
Q ss_pred CCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 452 ~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
+..|+.++.-+--+.+.+++.||.+ +|+.+..+
T Consensus 240 ~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 240 NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 8889888888888899999999999 99987543
No 274
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.02 E-value=0.0016 Score=70.04 Aligned_cols=219 Identities=16% Similarity=0.248 Sum_probs=116.3
Q ss_pred EEEccCCCEEEEEecCCeEEEEEcCCC-CceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCe
Q 001202 262 ASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (1124)
Q Consensus 262 va~spdg~lLAsGs~DgtV~vwd~~~~-~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~ 340 (1124)
++.+.+|++||+- +|..|.+=...++ +..+.+....+. ..-.-+.++||||+..||.+...|+|+++|+.|..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD-----~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKD-----PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCC-----CCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence 4667888888876 6778888776552 234444443221 12235789999999999999999999999999866
Q ss_pred eeEEeccC------CcCceeeeEEcCCCCC-C--cceEEEe--eeEEEEe--C---CCCeEEEEe---cCCcceE--EEE
Q 001202 341 LMSTIRQI------SLSSISSPIVKPNQDC-K--YEPLMSG--TSMMQWD--E---YGYRLYAIE---EGSSERV--LIF 399 (1124)
Q Consensus 341 l~~tl~~h------~~~~V~s~~~sp~~~~-~--~~~l~sg--~~i~~W~--~---~~~~l~~~~---~~~~~~v--~~~ 399 (1124)
+. .+... -...|.++.|-+...+ + .+.++-. +..+.+- . .+++.-... ......| .++
T Consensus 77 lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy 155 (282)
T PF15492_consen 77 LF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY 155 (282)
T ss_pred eE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence 54 33321 1234455555332211 1 1222210 0111111 1 112211111 1112233 334
Q ss_pred ecc-ceE-EeeccC----------CceeeeEeeecCCeEEEeecCCCcc--c--eeeecccce-ee----ccCCCceEEE
Q 001202 400 SFG-KCC-LNRGVS----------GMTYARQVIYGEDRLLVVQSEDTDE--L--KILHLNLPV-SY----ISQNWPVQHV 458 (1124)
Q Consensus 400 s~~-k~~-~s~s~d----------~~v~~w~l~~~~~~l~l~~~~~~~~--~--~w~~~~~p~-~~----~~~~~~I~~v 458 (1124)
++. +.+ +.|+.. ..+..|.++.+......+...+... . .+...+++. .+ .....-|..+
T Consensus 156 ~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~km 235 (282)
T PF15492_consen 156 HPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKM 235 (282)
T ss_pred cCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEE
Confidence 443 222 223221 1345677777665443333222111 0 111111221 11 1234568899
Q ss_pred EEccCCCEEEEEcCCCeE-EEEcCC----CcEEE
Q 001202 459 AASKDGMFLAVAGLHGLI-LYDIRQ----KKWRV 487 (1124)
Q Consensus 459 a~SpdG~~lAvag~dG~v-lwd~~s----g~wk~ 487 (1124)
++||||+.||+..-+|.+ +|++-+ ++|+.
T Consensus 236 SlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 236 SLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred EECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 999999999999999999 999865 45654
No 275
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.02 E-value=4.3e-05 Score=84.84 Aligned_cols=99 Identities=16% Similarity=0.266 Sum_probs=76.1
Q ss_pred CCceEeeecccc--ceecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEE
Q 001202 239 KKGLKLAEFIKI--DKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW 315 (1124)
Q Consensus 239 d~~i~~wd~~~~--~~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~law 315 (1124)
...+.+|....+ +...||-.-+ .|+|+||++.|.++..|+.|||=.... ...+..+. -+|+.-|..++.
T Consensus 131 ~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~Iesfc-------lGH~eFVS~isl 202 (390)
T KOG3914|consen 131 VYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFC-------LGHKEFVSTISL 202 (390)
T ss_pred ceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhc-------cccHhheeeeee
Confidence 334455554422 2337999888 999999999999999999999987765 33333332 249999999998
Q ss_pred CCCCCEEEEEECCCcEEEEEcCCCeeeEEec
Q 001202 316 TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1124)
Q Consensus 316 SPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~ 346 (1124)
-+ ++.|+|||.|+++++||+.+|+++.++.
T Consensus 203 ~~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 203 TD-NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cc-CceeeecCCCCcEEEEecccCCcccccc
Confidence 75 4669999999999999999998876664
No 276
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.02 E-value=0.0006 Score=80.91 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=43.0
Q ss_pred EEEccCCCEEEEEecC-------C--eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCC---
Q 001202 262 ASIAPEQQILAVGTRR-------G--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR--- 329 (1124)
Q Consensus 262 va~spdg~lLAsGs~D-------g--tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg--- 329 (1124)
.+|||||+.||..+.. + .|.+.++++ +. .+.+. ..+.....+|||||+.|+-...++
T Consensus 324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~-~~~LT---------~~~~~~~p~~SPDG~~I~f~~~~~~~~ 392 (419)
T PRK04043 324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY-IRRLT---------ANGVNQFPRFSSDGGSIMFIKYLGNQS 392 (419)
T ss_pred ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC-eEECC---------CCCCcCCeEECCCCCEEEEEEccCCcE
Confidence 4899999998877654 2 566666655 33 33343 112233588999999887665442
Q ss_pred cEEEEEcCCCe
Q 001202 330 GLTVWSVSGCR 340 (1124)
Q Consensus 330 ~I~vWdv~~~~ 340 (1124)
.+.+.++.+..
T Consensus 393 ~L~~~~l~g~~ 403 (419)
T PRK04043 393 ALGIIRLNYNK 403 (419)
T ss_pred EEEEEecCCCe
Confidence 35566776643
No 277
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.01 E-value=0.0049 Score=69.81 Aligned_cols=135 Identities=11% Similarity=0.211 Sum_probs=86.0
Q ss_pred CceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce--ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEE
Q 001202 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAVGTRRGVVELYD 284 (1124)
Q Consensus 208 ~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~--~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd 284 (1124)
...|+...+..+....+....||. .+-+.+..+++. ..+.-+-+ ++.++|+|+.++++-....+.+.|
T Consensus 359 ~~~VrY~r~~~~~e~~vigt~dgD---------~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 359 KGGVRYRRIQVDPEGDVIGTNDGD---------KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred CCceEEEEEccCCcceEEeccCCc---------eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 334554444433333444444443 233444444431 22333456 999999999999998888999999
Q ss_pred cCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCC----cEEEEEcCCCeeeEEeccCCcCceeeeEEcC
Q 001202 285 LAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR----GLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (1124)
Q Consensus 285 ~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg----~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp 360 (1124)
+++ +. .+.+. .. .-+-|+..+|+|+++.+|-+--+| .|+++|..+++....-.. .+.=.+++|.|
T Consensus 430 idn-gn-v~~id---kS----~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~--ta~DfsPaFD~ 498 (668)
T COG4946 430 IDN-GN-VRLID---KS----EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP--TAYDFSPAFDP 498 (668)
T ss_pred ecC-CC-eeEec---cc----ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC--cccccCcccCC
Confidence 987 43 22222 11 456799999999999999776554 699999999876543332 22345677777
Q ss_pred CC
Q 001202 361 NQ 362 (1124)
Q Consensus 361 ~~ 362 (1124)
++
T Consensus 499 d~ 500 (668)
T COG4946 499 DG 500 (668)
T ss_pred CC
Confidence 76
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=0.00033 Score=82.10 Aligned_cols=148 Identities=13% Similarity=0.174 Sum_probs=99.4
Q ss_pred CCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCce----Ee----eeccccceecCCCCeE-EEEEccCCCEEEEEe
Q 001202 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL----KL----AEFIKIDKELGSGDAV-CASIAPEQQILAVGT 275 (1124)
Q Consensus 205 ~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i----~~----wd~~~~~~~~gh~~~v-~va~spdg~lLAsGs 275 (1124)
.+......+++|+...++.++...||.+-+......+. +- -+..-.+.+.||+..| .+.||.+.+.|-+..
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 34566777888887776667777777655543321111 00 0111112236999999 999999999999999
Q ss_pred cCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeE-EeccCCcCcee
Q 001202 276 RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS-TIRQISLSSIS 354 (1124)
Q Consensus 276 ~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~-tl~~h~~~~V~ 354 (1124)
.+|-|.||-+-. ++...... ++ ..+..|.+++|..||+.++...+||.|.|=++.|.+... .+++. ..+
T Consensus 91 t~GlIiVWmlyk-gsW~EEMi-Nn-----RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~---~l~ 160 (1189)
T KOG2041|consen 91 TSGLIIVWMLYK-GSWCEEMI-NN-----RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ---LLA 160 (1189)
T ss_pred CCceEEEEeeec-ccHHHHHh-hC-----cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh---ecc
Confidence 999999999876 43222111 00 145669999999999999999999999999998876532 34432 233
Q ss_pred eeEEcCCC
Q 001202 355 SPIVKPNQ 362 (1124)
Q Consensus 355 s~~~sp~~ 362 (1124)
.+.|++|.
T Consensus 161 hv~ws~D~ 168 (1189)
T KOG2041|consen 161 HVLWSEDL 168 (1189)
T ss_pred ceeecccH
Confidence 56677765
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.87 E-value=0.005 Score=81.18 Aligned_cols=117 Identities=10% Similarity=0.066 Sum_probs=80.0
Q ss_pred EEEEecCCc-EEEEEecCCceEeeecccccee--c-------------C----------CCCeEEEEEccCCCEEEEEec
Q 001202 223 LFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE--L-------------G----------SGDAVCASIAPEQQILAVGTR 276 (1124)
Q Consensus 223 ~~~~s~dG~-~~~~~~~d~~i~~wd~~~~~~~--~-------------g----------h~~~v~va~spdg~lLAsGs~ 276 (1124)
.+++++||+ ++++...++.++.||..++... . | ...+..++++++|.++++-+.
T Consensus 744 GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~ 823 (1057)
T PLN02919 744 GISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY 823 (1057)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC
Confidence 466778887 6666667788888886543211 0 0 112348899999999999999
Q ss_pred CCeEEEEEcCCCCceeEEEeec-cCCC-----CCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCee
Q 001202 277 RGVVELYDLAESASLIRTVSLY-DWGY-----SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341 (1124)
Q Consensus 277 DgtV~vwd~~~~~~~~~~l~~~-~~g~-----~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l 341 (1124)
++.|++||.++ +... ++... ..|+ ..++-.....|+++|||+.+++-+.++.|++||+.++..
T Consensus 824 N~rIrviD~~t-g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 824 NHKIKKLDPAT-KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEEECCC-CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99999999876 4332 22210 0011 011223467899999999988888999999999988764
No 280
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.84 E-value=0.024 Score=64.99 Aligned_cols=276 Identities=13% Similarity=0.084 Sum_probs=144.5
Q ss_pred CcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeC----------CCeEEEEEeeecCce--eecCC
Q 001202 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----------SLYLHIFKVQITEKS--IQIGG 107 (1124)
Q Consensus 40 ~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~----------dg~l~i~~v~~~~~~--~~~~~ 107 (1124)
++|.+-|.. ....++...- .+++. ..+||||+.|.++.+ ++.|.+||+.+.+.. +..+.
T Consensus 27 ~~v~ViD~~-~~~v~g~i~~------G~~P~--~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGE-AGRVLGMTDG------GFLPN--PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECC-CCEEEEEEEc------cCCCc--eeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 689999985 5544554421 12222 239999999999887 688999999875421 11110
Q ss_pred CCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEe-c-CCcEEEEeccCccccceeeccCCCCcccccccccc
Q 001202 108 KQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-S-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHF 185 (1124)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t-~-dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs 185 (1124)
. +++. .+.......+++|++.+++.. . +..+.+++-... ... ..++-
T Consensus 98 ~-------------p~~~---~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~--kvv------------~ei~v- 146 (352)
T TIGR02658 98 G-------------PRFL---VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK--AFV------------RMMDV- 146 (352)
T ss_pred C-------------chhh---ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC--cEE------------EEEeC-
Confidence 0 0000 011223456777888888766 3 456666443322 111 11110
Q ss_pred CCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecC-CceEeeeccccceecCCCCeE--EE
Q 001202 186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDKELGSGDAV--CA 262 (1124)
Q Consensus 186 ~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d-~~i~~wd~~~~~~~~gh~~~v--~v 262 (1124)
++. ..+ |...-..+.+...||+.+..+.++ +.... .+.+...+-.+.+ .=
T Consensus 147 p~~--------------------~~v----y~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~---~~~~vf~~~~~~v~~rP 199 (352)
T TIGR02658 147 PDC--------------------YHI----FPTANDTFFMHCRDGSLAKVGYGTKGNPKI---KPTEVFHPEDEYLINHP 199 (352)
T ss_pred CCC--------------------cEE----EEecCCccEEEeecCceEEEEecCCCceEE---eeeeeecCCccccccCC
Confidence 000 000 111111223334666665544432 22111 0000000111222 11
Q ss_pred EEcc-CCCEEEEEecCCeEEEEEcCCCC-ceeEEEeeccCCCC--CCCCCCeEEEEECCCCCEEEEEEC----------C
Q 001202 263 SIAP-EQQILAVGTRRGVVELYDLAESA-SLIRTVSLYDWGYS--MDDTGPVSCIAWTPDNSAFAVGWK----------S 328 (1124)
Q Consensus 263 a~sp-dg~lLAsGs~DgtV~vwd~~~~~-~~~~~l~~~~~g~~--~~h~g~V~~lawSPDG~~Lasgs~----------D 328 (1124)
.+++ +|+++-+... |+|.+-|+.... .....+.....+.. .-..+...-++++|||+.+.++.. .
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~ 278 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS 278 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence 4456 7877766665 999999975422 11111221111100 013455566999999998887431 1
Q ss_pred CcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcc-eEE--Eee--eEEEEeCCCCeEEEEe
Q 001202 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLM--SGT--SMMQWDEYGYRLYAIE 389 (1124)
Q Consensus 329 g~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~-~l~--sg~--~i~~W~~~~~~l~~~~ 389 (1124)
+.|.++|..+++.+..+.-. ..+.+++++|++ + .+. .+. .+.+.|..+++.+...
T Consensus 279 ~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dg----kp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 279 RFLFVVDAKTGKRLRKIELG--HEIDSINVSQDA----KPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CEEEEEECCCCeEEEEEeCC--CceeeEEECCCC----CeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 47999999999999888752 468899999998 5 332 111 4556666666655543
No 281
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.83 E-value=0.0012 Score=69.70 Aligned_cols=199 Identities=10% Similarity=-0.003 Sum_probs=121.4
Q ss_pred EEEEecCCceEeeeccccce-ecCCCCe--E-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCC
Q 001202 233 MSCSVSKKGLKLAEFIKIDK-ELGSGDA--V-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG 308 (1124)
Q Consensus 233 ~~~~~~d~~i~~wd~~~~~~-~~gh~~~--v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g 308 (1124)
+..+++|.++++.+..-... ..-|..- + +++++||++++++-+....|-.|.++..+..+...... . .+.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a--~----t~D 204 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA--P----TSD 204 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec--c----cCC
Confidence 33445666666655432211 1233332 4 89999999999999999999999999855444332211 1 233
Q ss_pred CeEEEEECCCCCEEEEEECCCcEEEEEcCCCe-eeE---EeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCe
Q 001202 309 PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-LMS---TIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYR 384 (1124)
Q Consensus 309 ~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~-l~~---tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~ 384 (1124)
.=.+.+||.....+|++..||++.|||+..-. ++. +-+.|+.+.+..+.|+|.+. .+
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~--lD----------------- 265 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL--LD----------------- 265 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc--ce-----------------
Confidence 34789999999999999999999999996532 222 23345567778888877541 01
Q ss_pred EEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccc-eeeccCCCc-eEEEEEcc
Q 001202 385 LYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWP-VQHVAASK 462 (1124)
Q Consensus 385 l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p-~~~~~~~~~-I~~va~Sp 462 (1124)
|+... .|...+.. -|...+.+- +.+.+| ..+..|+.. |....|+.
T Consensus 266 LLf~s-Ehfs~~hv------------------~D~R~~~~~--------------q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 266 LLFIS-EHFSRVHV------------------VDTRNYVNH--------------QVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred EEEEe-cCcceEEE------------------EEcccCcee--------------eEEecCccccccccccccccccccC
Confidence 11111 22222221 122221110 001111 223344443 88889999
Q ss_pred CCCEEEEEcCCCeEEEEcCCCcEEEec
Q 001202 463 DGMFLAVAGLHGLILYDIRQKKWRVFG 489 (1124)
Q Consensus 463 dG~~lAvag~dG~vlwd~~sg~wk~f~ 489 (1124)
+|..+-+++++...-|++.++.-..|.
T Consensus 313 ~n~s~~v~~e~~~ae~ni~srsR~~fp 339 (344)
T KOG4532|consen 313 ENESNDVKNELQGAEYNILSRSRFSFP 339 (344)
T ss_pred CCcccccccchhhheeeccccceeccC
Confidence 999999999988888988877655553
No 282
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.82 E-value=4.7e-05 Score=89.41 Aligned_cols=201 Identities=11% Similarity=0.070 Sum_probs=135.0
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee-----cCCCCeEEEEEccCCCEEEEEecCC
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVCASIAPEQQILAVGTRRG 278 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~-----~gh~~~v~va~spdg~lLAsGs~Dg 278 (1124)
+-+|..+|+++.|+|.- -.++++++-|..+..||...+..- .-|+.+..|+||-....+.+.+...
T Consensus 110 lhghsraitd~n~~~q~---------pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~ 180 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQH---------PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN 180 (1081)
T ss_pred EecCccceeccccCCCC---------CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC
Confidence 34677889999888643 345777888888999998776432 2355666899998766655566777
Q ss_pred eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCC-CCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeE
Q 001202 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 357 (1124)
Q Consensus 279 tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPD-G~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~ 357 (1124)
.|.+||...++..+..++ + |...|+.++|..- -..+.+.+.||+|+.||.........-..-....|.-..
T Consensus 181 ~i~vwd~r~gs~pl~s~K----~----~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r 252 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLCSLK----G----HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGR 252 (1081)
T ss_pred ceEEEeccCCCcceEEec----c----cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecc
Confidence 899999998667777777 6 8888999988653 347888999999999998654321111111134555566
Q ss_pred EcCCCCCCcc-eEEEee---------eEEEEeCC-CCeEEEEecCCcceEEEEec-------------cceEEeeccCCc
Q 001202 358 VKPNQDCKYE-PLMSGT---------SMMQWDEY-GYRLYAIEEGSSERVLIFSF-------------GKCCLNRGVSGM 413 (1124)
Q Consensus 358 ~sp~~~~~~~-~l~sg~---------~i~~W~~~-~~~l~~~~~~~~~~v~~~s~-------------~k~~~s~s~d~~ 413 (1124)
+-|-++...- +...|. ....|+.. ..+.+....||++.|..|-. .-+++|-+.|.+
T Consensus 253 ~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~ 332 (1081)
T KOG0309|consen 253 YLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT 332 (1081)
T ss_pred ccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence 6666531110 111111 33456654 35667788899988854433 115789999999
Q ss_pred eeeeEeee
Q 001202 414 TYARQVIY 421 (1124)
Q Consensus 414 v~~w~l~~ 421 (1124)
+++|.+..
T Consensus 333 lrlWpI~~ 340 (1081)
T KOG0309|consen 333 LRLWPIDS 340 (1081)
T ss_pred eEeeeccH
Confidence 99998754
No 283
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.78 E-value=0.0011 Score=71.01 Aligned_cols=201 Identities=12% Similarity=0.096 Sum_probs=120.3
Q ss_pred eEEEEec---CCc-EEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEE
Q 001202 71 LQAVWSP---DTK-LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (1124)
Q Consensus 71 ~~v~wSP---Dg~-~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~ll 146 (1124)
..+.|+. ||. .++.+-..|.|.+|..+.......+.+-........ ..-...|...+..++
T Consensus 73 ~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~---------------~~lslD~~~~~~~i~ 137 (339)
T KOG0280|consen 73 FDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVV---------------EALSLDISTSGTKIF 137 (339)
T ss_pred ceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhe---------------eeeEEEeeccCceEE
Confidence 4566653 444 567777778888887765544333221111100000 000122344566788
Q ss_pred EEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEE
Q 001202 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (1124)
Q Consensus 147 v~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~ 226 (1124)
++.++|.+....-+.. ... ....|..|....-..+|+.
T Consensus 138 vs~s~G~~~~v~~t~~---~le-------------------------------~vq~wk~He~E~Wta~f~~-------- 175 (339)
T KOG0280|consen 138 VSDSRGSISGVYETEM---VLE-------------------------------KVQTWKVHEFEAWTAKFSD-------- 175 (339)
T ss_pred EEcCCCcEEEEeccee---eee-------------------------------ecccccccceeeeeeeccc--------
Confidence 8888888764322211 110 0013556666665555553
Q ss_pred ecCCcEEEEEecCCceEeeecccccee-----cCCCCeE-EEEEcc-CCCEEEEEecCCeEEEEEcCCCCceeEEEeecc
Q 001202 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1124)
Q Consensus 227 s~dG~~~~~~~~d~~i~~wd~~~~~~~-----~gh~~~v-~va~sp-dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~ 299 (1124)
.+-.++.+|++|+.+.-||...++.+ .-|...| |+.-|| ++..||+|+.|-.|++||...-++++..-+
T Consensus 176 -~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--- 251 (339)
T KOG0280|consen 176 -KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--- 251 (339)
T ss_pred -CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc---
Confidence 23467888889999999998854433 3466777 777665 578999999999999999886455544322
Q ss_pred CCCCCCCCCCeEEEEECCCCC--EEEEEECCCcEEEEEcCCC
Q 001202 300 WGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGC 339 (1124)
Q Consensus 300 ~g~~~~h~g~V~~lawSPDG~--~Lasgs~Dg~I~vWdv~~~ 339 (1124)
-.|+|+.+.++|--. .|+++ .-.+.+|-+.+.+
T Consensus 252 ------v~GGVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 252 ------VGGGVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDK 286 (339)
T ss_pred ------cccceEEEEecchhhhHHHHHH-HhcCceEEEeccc
Confidence 458899999999533 34443 4457777777554
No 284
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.78 E-value=0.0016 Score=69.90 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=77.7
Q ss_pred EEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccceecCCCCeE-EEEEccC-CCEEEEEecCCeEEEEEcCCCCc
Q 001202 213 WLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESAS 290 (1124)
Q Consensus 213 ~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v-~va~spd-g~lLAsGs~DgtV~vwd~~~~~~ 290 (1124)
++.+++.....++-.++|++......+.. ..+.+.|++|.-.. .++|+-. -.++-+|+.||.+.-||+..+++
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~-----le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISGVYETEMV-----LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEEEecceee-----eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 45555555455555566776633222222 23334466777666 6777754 46888999999999999985344
Q ss_pred eeEE-EeeccCCCCCCCCCCeEEEEECC-CCCEEEEEECCCcEEEEEcCC
Q 001202 291 LIRT-VSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSG 338 (1124)
Q Consensus 291 ~~~~-l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I~vWdv~~ 338 (1124)
.+.. .+ -|+.+|.+|.=|| ++.++++|+.|-.|++||...
T Consensus 201 ~i~~n~k--------vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 201 FIWHNSK--------VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred eeeecce--------eeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 3332 12 2888899998886 688999999999999999873
No 285
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.78 E-value=0.024 Score=66.64 Aligned_cols=248 Identities=19% Similarity=0.176 Sum_probs=131.3
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECC--CCCEEEEEECCCcEEEEEcCCCeeeEE
Q 001202 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMST 344 (1124)
Q Consensus 267 dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP--DG~~Lasgs~Dg~I~vWdv~~~~l~~t 344 (1124)
++..+.+++.||.+..+|.++ ++.+..... .+.+.+ +| ++..++.+..+|.+..||..+++.+..
T Consensus 104 ~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~---------~~~~~~---~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~ 170 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAED-GKELWRAKL---------SSEVLS---PPLVANGLVVVRTNDGRLTALDAATGERLWT 170 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCC-CcEeeeecc---------Cceeec---CCEEECCEEEEECCCCeEEEEEcCCCceeeE
Confidence 467788888999999999887 665544331 122221 22 345677778899999999999888776
Q ss_pred eccCCcC----ceeeeEEcCCCCCCcceEEEe--eeEEEEeCCCCeEEEEec-CCc------ceEEEE--ec---cceEE
Q 001202 345 IRQISLS----SISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEE-GSS------ERVLIF--SF---GKCCL 406 (1124)
Q Consensus 345 l~~h~~~----~V~s~~~sp~~~~~~~~l~sg--~~i~~W~~~~~~l~~~~~-~~~------~~v~~~--s~---~k~~~ 406 (1124)
....... ...++... ++ ..++.. ..+..+++++++..-... +.. .++..+ ++ +..+.
T Consensus 171 ~~~~~~~~~~~~~~sp~~~-~~----~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy 245 (377)
T TIGR03300 171 YSRVTPALTLRGSASPVIA-DG----GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVY 245 (377)
T ss_pred EccCCCceeecCCCCCEEE-CC----EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEE
Confidence 6543110 00111111 11 222211 256667766554332211 000 000000 00 33444
Q ss_pred eeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc-
Q 001202 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK- 484 (1124)
Q Consensus 407 s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~- 484 (1124)
.++.++.+..++..+++. .|..- ..... ....++.++.+++.+|.+ .+|..+|+
T Consensus 246 ~~~~~g~l~a~d~~tG~~-------------~W~~~-----~~~~~------~p~~~~~~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 246 AVSYQGRVAALDLRSGRV-------------LWKRD-----ASSYQ------GPAVDDNRLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred EEEcCCEEEEEECCCCcE-------------EEeec-----cCCcc------CceEeCCEEEEECCCCeEEEEECCCCcE
Confidence 455556665555443322 34321 00111 112356788888899999 99998875
Q ss_pred -EEEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEeecCCccEEEE--eeCCEEEEEEc
Q 001202 485 -WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD--VYEDYILVTYR 561 (1124)
Q Consensus 485 -wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~~~ld~~~~l~~~~l~s~~l~l~--~~~~~llv~~~ 561 (1124)
|+.-... .. ......-.++.+++++. +..+.+++. ++..++++.++...++..+ ..++.+++.+.
T Consensus 302 ~W~~~~~~--~~--~~ssp~i~g~~l~~~~~-----~G~l~~~d~---~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 302 LWKNDELK--YR--QLTAPAVVGGYLVVGDF-----EGYLHWLSR---EDGSFVARLKTDGSGIASPPVVVGDGLLVQTR 369 (377)
T ss_pred EEcccccc--CC--ccccCEEECCEEEEEeC-----CCEEEEEEC---CCCCEEEEEEcCCCccccCCEEECCEEEEEeC
Confidence 5421100 00 11122234667776633 236777766 3456777777655333322 35677888888
Q ss_pred CCeEEEE
Q 001202 562 PFDVHIF 568 (1124)
Q Consensus 562 d~~i~l~ 568 (1124)
||.+..|
T Consensus 370 dG~l~~~ 376 (377)
T TIGR03300 370 DGDLYAF 376 (377)
T ss_pred CceEEEe
Confidence 9988776
No 286
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.77 E-value=0.00014 Score=93.23 Aligned_cols=184 Identities=16% Similarity=0.200 Sum_probs=121.4
Q ss_pred eEEEEeecC--CeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceE
Q 001202 134 SVSNIVSDN--KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (1124)
Q Consensus 134 ~v~~i~~d~--~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I 211 (1124)
.|.++.... -+-+.|+.||.++.+.|........ +.....+.|
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~-----------------------------------~rt~g~s~v 2254 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVC-----------------------------------FRTAGNSRV 2254 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEE-----------------------------------eeccCcchh
Confidence 456665433 4677888999999988874322110 111122667
Q ss_pred EEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce---ecCCCCeE-EEEEccCCCEEEEEe---cCCeEEEEE
Q 001202 212 IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGT---RRGVVELYD 284 (1124)
Q Consensus 212 ~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~---~~gh~~~v-~va~spdg~lLAsGs---~DgtV~vwd 284 (1124)
+.+.|+..++.+.++.-||.+- +|... ++. ++.|+.+. ..+|=. +++|+++ .++.+.+||
T Consensus 2255 tr~~f~~qGnk~~i~d~dg~l~----------l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwD 2321 (2439)
T KOG1064|consen 2255 TRSRFNHQGNKFGIVDGDGDLS----------LWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWD 2321 (2439)
T ss_pred hhhhhcccCCceeeeccCCcee----------ecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchh
Confidence 7777776666665555555544 44433 111 24566665 555543 6667654 478999999
Q ss_pred cCCCC--ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 285 LAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 285 ~~~~~--~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
.-..+ .+++ . .|.++++++++-|.-+.|++|+.+|.|++||+...++++++..- .
T Consensus 2322 tl~~~~~s~v~--~--------~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~----------~--- 2378 (2439)
T KOG1064|consen 2322 TLLPPMNSLVH--T--------CHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQAL----------D--- 2378 (2439)
T ss_pred cccCcccceee--e--------ecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhh----------h---
Confidence 75422 2333 1 38999999999999999999999999999999988877766531 1
Q ss_pred CCCcceEEEee---eEEEEeCCCCeEEEEec
Q 001202 363 DCKYEPLMSGT---SMMQWDEYGYRLYAIEE 390 (1124)
Q Consensus 363 ~~~~~~l~sg~---~i~~W~~~~~~l~~~~~ 390 (1124)
..+++.+|+ .+++|...+..++....
T Consensus 2379 --~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2379 --TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred --hhheeeccCcccceEEEEccccchhhcCc
Confidence 115667666 89999998877766654
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.75 E-value=0.00024 Score=79.10 Aligned_cols=78 Identities=15% Similarity=0.169 Sum_probs=64.9
Q ss_pred CCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCC
Q 001202 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 382 (1124)
Q Consensus 306 h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~ 382 (1124)
|-..+..|+||||+++|.++..|..|+|=.....-.+.++.-.|+..|+.++..++ ..++||+ ++++|+..+
T Consensus 150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-----~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-----YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-----ceeeecCCCCcEEEEeccc
Confidence 99999999999999999999999999998888777777766544888999988776 4566655 889999988
Q ss_pred CeEEEE
Q 001202 383 YRLYAI 388 (1124)
Q Consensus 383 ~~l~~~ 388 (1124)
++++.+
T Consensus 225 gk~L~t 230 (390)
T KOG3914|consen 225 GKLLDT 230 (390)
T ss_pred CCcccc
Confidence 877644
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.74 E-value=0.0045 Score=73.52 Aligned_cols=90 Identities=10% Similarity=0.065 Sum_probs=56.8
Q ss_pred EEEEccCCCE-EEEEecC---CeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEE-ECC--CcEEE
Q 001202 261 CASIAPEQQI-LAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKS--RGLTV 333 (1124)
Q Consensus 261 ~va~spdg~l-LAsGs~D---gtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasg-s~D--g~I~v 333 (1124)
.-.|||||+. ++..+.+ ..|.++|+.+ ++. ..+. . ..+.+...+|||||+.|+.. +.+ ..|.+
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~~-~~lt----~----~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 261 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYT-GKK-EKIA----S----SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYL 261 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCC-CcE-EEEe----c----CCCcEEeeEECCCCCEEEEEEccCCCcEEEE
Confidence 8899999984 6654443 4677888765 433 2332 1 34556778899999877643 334 45777
Q ss_pred EEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 334 Wdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
+++.++... .+..+ ......+.|+||+
T Consensus 262 ~dl~~g~~~-~LT~~-~~~d~~p~~SPDG 288 (419)
T PRK04043 262 YDTNTKTLT-QITNY-PGIDVNGNFVEDD 288 (419)
T ss_pred EECCCCcEE-EcccC-CCccCccEECCCC
Confidence 788777643 34332 2223467799988
No 289
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.74 E-value=0.0092 Score=78.71 Aligned_cols=247 Identities=11% Similarity=0.083 Sum_probs=134.3
Q ss_pred EEEEec-CCcEEEEEecCCceEeeecccccee-c---CC-------------CCeEEEEEccCCCEEEEE-ecCCeEEEE
Q 001202 223 LFVLYS-NGQLMSCSVSKKGLKLAEFIKIDKE-L---GS-------------GDAVCASIAPEQQILAVG-TRRGVVELY 283 (1124)
Q Consensus 223 ~~~~s~-dG~~~~~~~~d~~i~~wd~~~~~~~-~---gh-------------~~~v~va~spdg~lLAsG-s~DgtV~vw 283 (1124)
-+++++ +|+++++....+.+.++|....... . +. ..+..+++++++..|.++ ..++.|+++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 345554 5677777777777777764322110 0 10 123488999988765554 456789999
Q ss_pred EcCCCCceeEEEeec-cCCCC--CC-----C-CCCeEEEEECC-CCCEEEEEECCCcEEEEEcCCCeeeEEeccCC----
Q 001202 284 DLAESASLIRTVSLY-DWGYS--MD-----D-TGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS---- 349 (1124)
Q Consensus 284 d~~~~~~~~~~l~~~-~~g~~--~~-----h-~g~V~~lawSP-DG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~---- 349 (1124)
|..+ + .+.++... ..|.. .+ . -..-..++++| +|...++.+.++.|++|+..++... ++.+.+
T Consensus 652 d~~~-~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~ 728 (1057)
T PLN02919 652 DFVN-E-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN 728 (1057)
T ss_pred ecCC-C-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence 9865 3 34444311 00000 00 0 01235799999 5667777788899999999876532 232211
Q ss_pred ----------cCceeeeEEcCCCCCCcc-eEEEee---eEEEEeCCCCeEEEEecCC-----------------------
Q 001202 350 ----------LSSISSPIVKPNQDCKYE-PLMSGT---SMMQWDEYGYRLYAIEEGS----------------------- 392 (1124)
Q Consensus 350 ----------~~~V~s~~~sp~~~~~~~-~l~sg~---~i~~W~~~~~~l~~~~~~~----------------------- 392 (1124)
....+.++++|++ . .+++.. +++.|+..++.......+.
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG----~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDL----KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred CCCCccccccccCccEEEEeCCC----CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 1234567888887 4 333322 8888998765432221110
Q ss_pred -cceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEE
Q 001202 393 -SERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA 470 (1124)
Q Consensus 393 -~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAva 470 (1124)
... ++++. ++..++...++.++.|+...+....+.-.| ..... .. + ...+.-.....++++++|+.+++-
T Consensus 805 ~P~G-vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G--~~G~~--dG--~-~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 805 HPLG-VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG--KAGFK--DG--K-ALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred CCce-eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC--CcCCC--CC--c-ccccccCCceEEEEeCCCCEEEEE
Confidence 001 23333 455556666666766664433221111111 00000 00 0 001111234679999999988888
Q ss_pred cCCCeE-EEEcCCCc
Q 001202 471 GLHGLI-LYDIRQKK 484 (1124)
Q Consensus 471 g~dG~v-lwd~~sg~ 484 (1124)
+.++.| +||+.+++
T Consensus 877 t~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 877 TNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCCEEEEEECCCCc
Confidence 889999 99998875
No 290
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.74 E-value=0.022 Score=67.51 Aligned_cols=246 Identities=14% Similarity=0.148 Sum_probs=126.6
Q ss_pred ceEEEEeeCCeEEEEEcCC------------cEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCC
Q 001202 22 QQIIYFKVNNGLLLIASPC------------HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSL 89 (1124)
Q Consensus 22 ~~iv~fS~dg~llA~~~~~------------~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg 89 (1124)
..+++.+|.|..+|+..+. .|.|++.+ +.++++..-. . |.+..+.|+.+ ..|++.+.+|
T Consensus 31 ~~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s--G~ll~~i~w~-----~-~~iv~~~wt~~-e~LvvV~~dG 101 (410)
T PF04841_consen 31 DYIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS--GKLLSSIPWD-----S-GRIVGMGWTDD-EELVVVQSDG 101 (410)
T ss_pred ceeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC--CCEeEEEEEC-----C-CCEEEEEECCC-CeEEEEEcCC
Confidence 5677888888888887766 58999885 5566665432 2 78899999986 5666777999
Q ss_pred eEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEe-ccCcccccee
Q 001202 90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSIS-WKGEFYGAFE 168 (1124)
Q Consensus 90 ~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~-Wd~~~~~~~~ 168 (1124)
.+++||+.... ....+ .... ..+..+..+.++...+.++++-+.++.+.... ++.. .....
T Consensus 102 ~v~vy~~~G~~-~fsl~-~~i~---------------~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~-~~~~~ 163 (410)
T PF04841_consen 102 TVRVYDLFGEF-QFSLG-EEIE---------------EEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEP-VKLRR 163 (410)
T ss_pred EEEEEeCCCce-eechh-hhcc---------------ccCcccccccccccCCCCEEEECCCCeEEEEeCcccc-chhhc
Confidence 99999986321 11010 0000 00111112222233345677777777776542 1111 00000
Q ss_pred eccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecc
Q 001202 169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI 248 (1124)
Q Consensus 169 l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~ 248 (1124)
...+|..... ..+......+ ..+ +.++...+....+..+...+..
T Consensus 164 ----------~~~~p~~~~~-------------~~~~~~~~~i--~~l----------~~~~~~~i~~~~g~~i~~i~~~ 208 (410)
T PF04841_consen 164 ----------LPEIPGLWTK-------------FHWWPSWTVI--PLL----------SSDRVVEILLANGETIYIIDEN 208 (410)
T ss_pred ----------cccCCCcccc-------------cccccccccc--eEe----------ecCcceEEEEecCCEEEEEEcc
Confidence 0011110000 0000000111 111 2223333322333333321111
Q ss_pred ccceecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC
Q 001202 249 KIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1124)
Q Consensus 249 ~~~~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~ 327 (1124)
..+.... .+.+ .+++||+|++||.-..+|.+.+...+- .+....+... .......+.|.-++ .++..+.
T Consensus 209 ~~~~i~~-~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~-------~~~~p~~~~WCG~d-av~l~~~ 278 (410)
T PF04841_consen 209 SFKQIDS-DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDTD-------SKSPPKQMAWCGND-AVVLSWE 278 (410)
T ss_pred ccccccC-CCCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeecC-------cCCCCcEEEEECCC-cEEEEeC
Confidence 1111112 2345 999999999999999999999987654 3433333311 23456889998664 3444443
Q ss_pred CCcEEEEEcCCCe
Q 001202 328 SRGLTVWSVSGCR 340 (1124)
Q Consensus 328 Dg~I~vWdv~~~~ 340 (1124)
..+.+....+..
T Consensus 279 -~~l~lvg~~~~~ 290 (410)
T PF04841_consen 279 -DELLLVGPDGDS 290 (410)
T ss_pred -CEEEEECCCCCc
Confidence 467776655443
No 291
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.73 E-value=0.0036 Score=73.59 Aligned_cols=75 Identities=24% Similarity=0.424 Sum_probs=59.4
Q ss_pred CCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEE
Q 001202 256 SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (1124)
Q Consensus 256 h~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vW 334 (1124)
....+ |+++||+...++.||.||+|.+||... +. ....+ +.=..+.++|+|+|..+++|+..|.+.+|
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~~-t~~~k---------a~~~P~~iaWHp~gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTR-GV-TLLAK---------AEFIPTLIAWHPDGAIFVVGSEQGELQCF 326 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCC-Ce-eeeee---------ecccceEEEEcCCCcEEEEEcCCceEEEE
Confidence 44445 999999999999999999999999876 21 11112 22236889999999999999999999999
Q ss_pred EcCCCee
Q 001202 335 SVSGCRL 341 (1124)
Q Consensus 335 dv~~~~l 341 (1124)
|+.-...
T Consensus 327 D~ALspi 333 (545)
T PF11768_consen 327 DMALSPI 333 (545)
T ss_pred EeecCcc
Confidence 9965443
No 292
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.72 E-value=0.012 Score=74.04 Aligned_cols=241 Identities=13% Similarity=0.105 Sum_probs=125.3
Q ss_pred cceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEE
Q 001202 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLL 147 (1124)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv 147 (1124)
+.++++.|--|...|++++..|.|.+-|.++..- ..-+ .-.....+.++++|.+.+++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-------------------eivg---~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-------------------EIVG---NVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-------------------eeee---eccCceEEEeecCCCcEEEE
Confidence 6789999999999999999999999987765321 1111 00112244567777788888
Q ss_pred EecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEe
Q 001202 148 GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY 227 (1124)
Q Consensus 148 ~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s 227 (1124)
.|..+++.....+=+......+..-.......-.+++.-.. ...-+..+......-..+...+..++.+ +....+.+-
T Consensus 127 iT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrke-Tqfrgs~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWR 204 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKE-TQFRGSEGRQAARQKIEKEKALEQIEQD-DHKTSISWR 204 (1265)
T ss_pred EeCCcEEEEEeccccchhccccccccccccccceecccccc-eeeecchhhhcccccccccccccchhhc-cCCceEEEc
Confidence 88888777654322211111110000000000011110000 0000000000000000011111111111 111234555
Q ss_pred cCCcEEEEEe-----cCCceEeeecccccee--cCCCCeE--EEEEccCCCEEEEEe---cCCeEEEEEcCCCCceeEEE
Q 001202 228 SNGQLMSCSV-----SKKGLKLAEFIKIDKE--LGSGDAV--CASIAPEQQILAVGT---RRGVVELYDLAESASLIRTV 295 (1124)
Q Consensus 228 ~dG~~~~~~~-----~d~~i~~wd~~~~~~~--~gh~~~v--~va~spdg~lLAsGs---~DgtV~vwd~~~~~~~~~~l 295 (1124)
-||+++++.. +...+++||-. +..- ....... +++|-|.|.++|+-. .|+.|.+|.-+. -.-..+
T Consensus 205 gDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG--L~hg~f 281 (1265)
T KOG1920|consen 205 GDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG--LRHGEF 281 (1265)
T ss_pred cCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC--cccccc
Confidence 7888888743 33789999866 2111 0111222 899999999999753 456788887543 111112
Q ss_pred eeccCCCCCCCCCCeEEEEECCCCCEEEE---EECCCcEEEEEcCCC
Q 001202 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAV---GWKSRGLTVWSVSGC 339 (1124)
Q Consensus 296 ~~~~~g~~~~h~g~V~~lawSPDG~~Las---gs~Dg~I~vWdv~~~ 339 (1124)
.+.. +....+|..++|+.++..||+ ......|++|-+.+-
T Consensus 282 ~l~~----p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 282 VLPF----PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccCC----cccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 2111 124455999999999999998 566666999988654
No 293
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=8.9e-05 Score=84.15 Aligned_cols=176 Identities=17% Similarity=0.238 Sum_probs=104.6
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEE
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~ 332 (1124)
.||...+ .++--.+..-+++++.|.||++|.+...+..+.+.. -+|.| .+|+.+|.++.|-.|-++++++ ||+|-
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsa-CQfTY-~aHkk~i~~igfL~~lr~i~Sc--D~giH 807 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSA-CQFTY-QAHKKPIHDIGFLADLRSIASC--DGGIH 807 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccce-eeeEh-hhccCcccceeeeeccceeeec--cCcce
Confidence 5788877 553333344577899999999999987553332110 00001 1499999999999999998875 78999
Q ss_pred EEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCC
Q 001202 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSG 412 (1124)
Q Consensus 333 vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~ 412 (1124)
+||.+-++++...... |.. -+|..++.-. .-+..++ ++-++...
T Consensus 808 lWDPFigr~Laq~~da-----------pk~-------~a~~~ikcl~-----------nv~~~il-------iAgcsaeS 851 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDA-----------PKE-------GAGGNIKCLE-----------NVDRHIL-------IAGCSAES 851 (1034)
T ss_pred eecccccchhHhhhcC-----------ccc-------CCCceeEecc-----------cCcchhe-------eeeccchh
Confidence 9999988766544321 110 0001111100 0000000 01113344
Q ss_pred ceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 413 ~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
++++.|...++-. -.|..-+. .+.|.-++++++-+.|+++|+|=..|.+ +-|.++|+
T Consensus 852 TVKl~DaRsce~~-----------~E~kVcna----~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 852 TVKLFDARSCEWT-----------CELKVCNA----PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred hheeeecccccce-----------eeEEeccC----CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 5555554332210 01111111 1345668999999999999999999999 99999986
No 294
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.69 E-value=0.00019 Score=91.94 Aligned_cols=182 Identities=11% Similarity=0.182 Sum_probs=124.8
Q ss_pred CCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEE
Q 001202 255 GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (1124)
Q Consensus 255 gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~v 333 (1124)
-+-+.| |+.=+|...+-.+|+.||.|++|.... +..+.++... | ...|+.+.|+..|+.+..+..||.+.+
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~-~~~v~~~rt~--g-----~s~vtr~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGH-GQQVVCFRTA--G-----NSRVTRSRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccC-CCeEEEeecc--C-----cchhhhhhhcccCCceeeeccCCceee
Confidence 345566 888889999999999999999999877 5555554411 2 377999999999999999999999999
Q ss_pred EEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEe------eeEEEEeCC-CCeEEEEecCCcceE--EEEec-cc
Q 001202 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG------TSMMQWDEY-GYRLYAIEEGSSERV--LIFSF-GK 403 (1124)
Q Consensus 334 Wdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg------~~i~~W~~~-~~~l~~~~~~~~~~v--~~~s~-~k 403 (1124)
|.+. .+...+-+-| ....+..+|-... +++. ..+-.||.- .+..+.+...|++.. .++.| ..
T Consensus 2278 ~q~~-pk~~~s~qch-nk~~~Df~Fi~s~------~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q 2349 (2439)
T KOG1064|consen 2278 WQAS-PKPYTSWQCH-NKALSDFRFIGSL------LATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ 2349 (2439)
T ss_pred cccC-CcceeccccC-Cccccceeeeehh------hhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce
Confidence 9987 3333333334 3334444442211 1111 156678753 222233334555554 55556 66
Q ss_pred eEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC
Q 001202 404 CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 404 ~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s 482 (1124)
.++||+.+|.+++||+.+... -|.++. +. ...++++|+..|.+ ||++..
T Consensus 2350 llisggr~G~v~l~D~rqrql-------------------------~h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQRQL-------------------------RHTFQA----LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred EEEecCCcCcEEEeehHHHHH-------------------------HHHhhh----hh-hhheeeccCcccceEEEEccc
Confidence 788999999999999876443 244443 44 67789999999999 999865
No 295
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.59 E-value=0.028 Score=63.13 Aligned_cols=258 Identities=15% Similarity=0.150 Sum_probs=131.5
Q ss_pred EEEeeCCeEEEEEc-----------CCcEEEEecCCCceeEEEEeeChH-HHhhhcceeEEEEecCCcEEEEEe--CCCe
Q 001202 25 IYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRDSE-SVQREGENLQAVWSPDTKLIAVVT--SSLY 90 (1124)
Q Consensus 25 v~fS~dg~llA~~~-----------~~~l~IW~~~~~~~~l~~~~r~~~-sl~~~G~~~~v~wSPDg~~Lav~t--~dg~ 90 (1124)
+.+||||+.+.+++ .+-|.+||.. ...+.+...-..+ ....--.....++|+||+++.+.. -...
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecC-cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 44799998776543 1359999994 7766665544432 111101112467888888777643 2233
Q ss_pred EEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEee-cCCeEEEEecCCcEEEEeccCccccceee
Q 001202 91 LHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHMLLGLSDGSLYSISWKGEFYGAFEL 169 (1124)
Q Consensus 91 l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-d~~~llv~t~dg~v~~~~Wd~~~~~~~~l 169 (1124)
|-+.|++..+ +-..+.+.+ +.-+-+ .+..+.+-|.||.+..+..+.......
T Consensus 120 VtVVDl~~~k---------------------vv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~-- 172 (342)
T PF06433_consen 120 VTVVDLAAKK---------------------VVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ-- 172 (342)
T ss_dssp EEEEETTTTE---------------------EEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEE--
T ss_pred EEEEECCCCc---------------------eeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCEeE--
Confidence 5555554221 111122222 111222 346788888999988887775422211
Q ss_pred ccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceE---eee
Q 001202 170 VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK---LAE 246 (1124)
Q Consensus 170 ~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~---~wd 246 (1124)
.+.-.|..+.+ .-+..-.++...+...+++=+|+++........++ -|+
T Consensus 173 ---------~~t~~F~~~~d-------------------p~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~ 224 (342)
T PF06433_consen 173 ---------KSTKVFDPDDD-------------------PLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS 224 (342)
T ss_dssp ---------EEEEESSTTTS--------------------B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred ---------eeccccCCCCc-------------------ccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence 01112333322 11111123333445555666777766655544433 354
Q ss_pred ccccc----eecCCCCeEEEEEccCCCEEEEEe--------cCCe--EEEEEcCCCCceeEEEeeccCCCCCCCCCCeEE
Q 001202 247 FIKID----KELGSGDAVCASIAPEQQILAVGT--------RRGV--VELYDLAESASLIRTVSLYDWGYSMDDTGPVSC 312 (1124)
Q Consensus 247 ~~~~~----~~~gh~~~v~va~spdg~lLAsGs--------~Dgt--V~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~ 312 (1124)
..+.. .|.. .+.=-+++++....|-+-- .|+. |-+||+.+ .+.+..+.+ ..++.+
T Consensus 225 ~~t~~e~~~~WrP-GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l---------~~~~~S 293 (342)
T PF06433_consen 225 LLTDAEKADGWRP-GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL---------EHPIDS 293 (342)
T ss_dssp SS-HHHHHTTEEE--SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE---------EEEESE
T ss_pred ccCccccccCcCC-cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC---------CCccce
Confidence 43211 2210 1111477777554433321 2333 55566666 667777764 234789
Q ss_pred EEECCCCC-EEEEE-ECCCcEEEEEcCCCeeeEEeccCC
Q 001202 313 IAWTPDNS-AFAVG-WKSRGLTVWSVSGCRLMSTIRQIS 349 (1124)
Q Consensus 313 lawSPDG~-~Lasg-s~Dg~I~vWdv~~~~l~~tl~~h~ 349 (1124)
|+.|.|.+ .|.+. ..++.+.|||..+++++.++.+-+
T Consensus 294 i~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 294 IAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp EEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred EEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 99999888 66554 457899999999999999998753
No 296
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.58 E-value=0.00014 Score=55.05 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=32.7
Q ss_pred ceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEE
Q 001202 445 PVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (1124)
Q Consensus 445 p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd 479 (1124)
..++.+|..+|++++|+|++++|++||.||.+ +||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45678999999999999999999999999999 997
No 297
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.58 E-value=0.024 Score=66.65 Aligned_cols=143 Identities=13% Similarity=0.035 Sum_probs=74.5
Q ss_pred CEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCC--CCeEEEEECC--CCCEEEEEECCCcEEEEEcCCCeeeEE
Q 001202 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT--GPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMST 344 (1124)
Q Consensus 269 ~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~--g~V~~lawSP--DG~~Lasgs~Dg~I~vWdv~~~~l~~t 344 (1124)
..+.++..+|.+..+|..+ ++.+-...... + .+.. ..+..+.-+| ++..+.+++.+|.+..||..+++....
T Consensus 191 ~~v~~~~~~g~v~ald~~t-G~~~W~~~~~~-~--~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQT-GQPLWEQRVAL-P--KGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWK 266 (377)
T ss_pred CEEEEECCCCEEEEEEccC-CCEeeeecccc-C--CCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence 4677888899999999877 55443222110 0 0000 0011111112 355777788899999999998877665
Q ss_pred eccCCcCceeeeEEcCCCCCCcceEEEe--eeEEEEeCCCCeEEEEecCCcceEE-EEe-ccceEEeeccCCceeeeEee
Q 001202 345 IRQISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEGSSERVL-IFS-FGKCCLNRGVSGMTYARQVI 420 (1124)
Q Consensus 345 l~~h~~~~V~s~~~sp~~~~~~~~l~sg--~~i~~W~~~~~~l~~~~~~~~~~v~-~~s-~~k~~~s~s~d~~v~~w~l~ 420 (1124)
.... ....+... ++ ..++.. ..+..++..++++......-..... ... .+..+..++.+|.+..++..
T Consensus 267 ~~~~---~~~~p~~~-~~----~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 267 RDAS---SYQGPAVD-DN----RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred eccC---CccCceEe-CC----EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECC
Confidence 5421 11122221 11 222222 2677788877665433211111111 111 15566777788888777754
Q ss_pred ecC
Q 001202 421 YGE 423 (1124)
Q Consensus 421 ~~~ 423 (1124)
.++
T Consensus 339 tG~ 341 (377)
T TIGR03300 339 DGS 341 (377)
T ss_pred CCC
Confidence 443
No 298
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.57 E-value=0.012 Score=70.49 Aligned_cols=116 Identities=17% Similarity=0.281 Sum_probs=83.9
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCC------CC------EEEEEECC
Q 001202 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD------NS------AFAVGWKS 328 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPD------G~------~Lasgs~D 328 (1124)
.+.|+|.| +||.||.+ .|.|-|..+ -+.+..+. - |...|+.|.|.|- +. .||++...
T Consensus 20 A~Dw~~~G-LiAygshs-lV~VVDs~s-~q~iqsie----~----h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~ 88 (1062)
T KOG1912|consen 20 AADWSPSG-LIAYGSHS-LVSVVDSRS-LQLIQSIE----L----HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS 88 (1062)
T ss_pred ccccCccc-eEEEecCc-eEEEEehhh-hhhhhccc----c----CccceeEEEeccCCCchhccCccccceeEEecccc
Confidence 67888877 78988754 677777766 55666665 2 7888999999872 22 67888888
Q ss_pred CcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceE--EEee-eEEEEeCCCCeEEEE
Q 001202 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL--MSGT-SMMQWDEYGYRLYAI 388 (1124)
Q Consensus 329 g~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l--~sg~-~i~~W~~~~~~l~~~ 388 (1124)
|.|.+||...+..++.+..+ .+++..+.|-|..+.....+ +.|+ ++.+|+..+|+.+-.
T Consensus 89 GrIil~d~~~~s~~~~l~~~-~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk 150 (1062)
T KOG1912|consen 89 GRIILVDFVLASVINWLSHS-NDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK 150 (1062)
T ss_pred CcEEEEEehhhhhhhhhcCC-CcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec
Confidence 99999999998888888776 67788888877654332222 2343 888897776655443
No 299
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.0006 Score=77.65 Aligned_cols=173 Identities=13% Similarity=0.133 Sum_probs=113.7
Q ss_pred cccccceEEEEee-cC-CeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccC
Q 001202 128 FAEKGLSVSNIVS-DN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF 205 (1124)
Q Consensus 128 ~~~~~~~v~~i~~-d~-~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~ 205 (1124)
+.+++..|.+|+. |+ +.++.+++|.+|+.|+...+.....+ ..+.....
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t-----------------------------saCQfTY~ 781 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT-----------------------------SACQFTYQ 781 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc-----------------------------ceeeeEhh
Confidence 3455556666543 33 56888999999999776655432210 01222345
Q ss_pred CCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee--------cCCCCeE-EEEEccCCC-EEEEEe
Q 001202 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--------LGSGDAV-CASIAPEQQ-ILAVGT 275 (1124)
Q Consensus 206 ~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~--------~gh~~~v-~va~spdg~-lLAsGs 275 (1124)
.|+.+|.++.|- .|-+.++ +-|+.+.+||...+..+ .+....+ |+- |-+.. ++|.++
T Consensus 782 aHkk~i~~igfL----------~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcs 848 (1034)
T KOG4190|consen 782 AHKKPIHDIGFL----------ADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCS 848 (1034)
T ss_pred hccCcccceeee----------eccceee--eccCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeecc
Confidence 677778665553 5556555 55788999997655432 1222333 442 32333 455557
Q ss_pred cCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEec
Q 001202 276 RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1124)
Q Consensus 276 ~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~ 346 (1124)
...||+++|... .+....++.-.. ++..+-+.+++..|.|+.+|+|-.+|.|.+-|..+|..+.+.+
T Consensus 849 aeSTVKl~DaRs-ce~~~E~kVcna---~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 849 AESTVKLFDARS-CEWTCELKVCNA---PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred chhhheeeeccc-ccceeeEEeccC---CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 899999999887 665555554321 1245679999999999999999999999999999998776554
No 300
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.47 E-value=0.041 Score=63.43 Aligned_cols=268 Identities=14% Similarity=0.166 Sum_probs=137.4
Q ss_pred EEEecCCcEEEEEecCCceEeeecccccee--cCCCCeEEEEEccCCCEEEEEecCCe---------------EEEEEcC
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGV---------------VELYDLA 286 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~--~gh~~~v~va~spdg~lLAsGs~Dgt---------------V~vwd~~ 286 (1124)
+..+|.|++++.. ....+..|.+....++ .-|.+.-.+.|||.+.+|.+=+..+. +.+||+.
T Consensus 38 ~~~SP~G~~l~~~-~~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~ 116 (561)
T COG5354 38 VSESPLGTYLFSE-HAAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA 116 (561)
T ss_pred eeecCcchheehh-hccceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc
Confidence 3445778777643 3345777776654332 34555448999999999998765444 8999998
Q ss_pred CCCceeEEEeeccCCCCCCCCCCeE-EEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCC
Q 001202 287 ESASLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK 365 (1124)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~h~g~V~-~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~ 365 (1124)
+ +..+..+.... ...... -+.||-|..++|=-.. ..+.|.++...-....+..-....+....++|.++.
T Consensus 117 s-g~iv~sf~~~~------q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~- 187 (561)
T COG5354 117 S-GMIVFSFNGIS------QPYLGWPVLKFSIDDKYVARVVG-SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNH- 187 (561)
T ss_pred C-ceeEeeccccC------Ccccccceeeeeecchhhhhhcc-CeEEEEecCCccccCchhhccccceeeEEecCCCCC-
Confidence 8 77777666221 111123 6889999887765533 478899973222111111111234666677776521
Q ss_pred cceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEeec---cCCceeeeEee------------------ecCC
Q 001202 366 YEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRG---VSGMTYARQVI------------------YGED 424 (1124)
Q Consensus 366 ~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s---~d~~v~~w~l~------------------~~~~ 424 (1124)
. ....|.++... ....-+|+.++..+.+.+-+ .++.-.-|..+ .|+.
T Consensus 188 -~------~la~~tPEk~~-----kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfges 255 (561)
T COG5354 188 -D------ELAYWTPEKLN-----KPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGES 255 (561)
T ss_pred -c------eEEEEccccCC-----CCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccc
Confidence 1 12345444211 00111223333322222221 11112222211 1122
Q ss_pred eEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEc--CCCeE-EEEcCCCcEEEecCcCceeeeEEEE
Q 001202 425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG--LHGLI-LYDIRQKKWRVFGDITQEQKIQSKG 501 (1124)
Q Consensus 425 ~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag--~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~g 501 (1124)
.+++.+- ....+|... .-.+||-..+|+|+++.+++.+ ..-.+ ++|+.++- .|.-..+.+ ...-
T Consensus 256 nLyl~~~--------~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl--~~~~Pe~~r--NT~~ 322 (561)
T COG5354 256 NLYLLRI--------TERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL--RFYFPEQKR--NTIF 322 (561)
T ss_pred eEEEEee--------cccccceec-cccccceeeeecccCCceeEEecccccceeecccccce--EEecCCccc--cccc
Confidence 2222221 111233332 4578999999999999888665 34555 88887762 222222221 1112
Q ss_pred EEecCCEEEEEEEecCCCeEEEEEeeC
Q 001202 502 LLWLGKIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 502 l~W~~~~liv~~~~~~~~~~elrly~~ 528 (1124)
+.-..+++++++..... ..+.+|+.
T Consensus 323 fsp~~r~il~agF~nl~--gni~i~~~ 347 (561)
T COG5354 323 FSPHERYILFAGFDNLQ--GNIEIFDP 347 (561)
T ss_pred ccCcccEEEEecCCccc--cceEEecc
Confidence 22345677776553322 24555554
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.31 E-value=0.0013 Score=70.50 Aligned_cols=265 Identities=12% Similarity=0.069 Sum_probs=133.4
Q ss_pred HhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceee-----cCCCCCCCcceeeEEEEeeeeeecccccceEEEE
Q 001202 64 VQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQ-----IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI 138 (1124)
Q Consensus 64 l~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 138 (1124)
..+...+++|.|-.-|.++|+|...|.+.+|.-......-| .+.|..+-..+.+. .+.++ ...|.-+
T Consensus 23 ~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSl--eieEK------in~I~w~ 94 (460)
T COG5170 23 STEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSL--EIEEK------INAIEWF 94 (460)
T ss_pred ccccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhc--cHHHH------hhheeee
Confidence 34456678999999999999999999999997654331101 12222211011111 11111 0011111
Q ss_pred ee-cCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccC-CCCcccccCCCCeeecccCCCCceEEEE--
Q 001202 139 VS-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFP-SNGLASVDTSGAFVSDHKFPISSAIIWL-- 214 (1124)
Q Consensus 139 ~~-d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~-~~ql~s~~~~~~~~~~~~~~~~~~I~~i-- 214 (1124)
-. ...++++.+.|.++.+|..-....... +...+...-.++ ++.+.+..+. .---+..|...|..-
T Consensus 95 ~~t~r~hFLlstNdktiKlWKiyeknlk~v-------a~nnls~~~~~~~~g~~~s~~~l---~lprls~hd~iiaa~p~ 164 (460)
T COG5170 95 DDTGRNHFLLSTNDKTIKLWKIYEKNLKVV-------AENNLSDSFHSPMGGPLTSTKEL---LLPRLSEHDEIIAAKPC 164 (460)
T ss_pred cCCCcceEEEecCCceeeeeeeecccchhh-------hccccccccccccCCCcCCHHHh---hcccccccceEEEeccc
Confidence 11 236788999999999854321100000 001111111111 1111111000 000011111111100
Q ss_pred -Ee---cCCcceEEEEecCCcEEEEEecCCceEeeecccccee------cCC-----CCeE-EEEEccC-CCEEEEEecC
Q 001202 215 -EL---CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGS-----GDAV-CASIAPE-QQILAVGTRR 277 (1124)
Q Consensus 215 -~~---s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~------~gh-----~~~v-~va~spd-g~lLAsGs~D 277 (1124)
.| +|.-...+.+.+|.+.+++ +++-.|.+|+......- ..| +..+ +..|+|. ...+.-.+..
T Consensus 165 rvyaNaH~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk 243 (460)
T COG5170 165 RVYANAHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK 243 (460)
T ss_pred eeccccceeEeeeeeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence 01 1222345556677777664 56778888876533210 122 2344 7889996 4456667788
Q ss_pred CeEEEEEcCCCCceeE---EEeeccCCCC----CCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC-eeeEEeccC
Q 001202 278 GVVELYDLAESASLIR---TVSLYDWGYS----MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQI 348 (1124)
Q Consensus 278 gtV~vwd~~~~~~~~~---~l~~~~~g~~----~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~-~l~~tl~~h 348 (1124)
|+|++-|+....-+.. .+.....|.. .+-...|..+.|||+|+++++-+. -++++||+... .++.|+.-|
T Consensus 244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 9999999975221111 1111111211 112456788999999999998776 59999999653 456666444
No 302
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.013 Score=65.60 Aligned_cols=76 Identities=13% Similarity=0.295 Sum_probs=60.9
Q ss_pred cCCCCeE-EEEEccCCC-EEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCC-EEEEEECCCc
Q 001202 254 LGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRG 330 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~-lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~-~Lasgs~Dg~ 330 (1124)
.+|+..+ .++|||... ++..++.+.+|+|.|+.+ ........ . | ..+++++|.-|.. +|-.|-.+|.
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~----a----~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYI----A----Y-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeehee----c----c-CCceeeeeccCCcceeEEeccCce
Confidence 5778888 999999876 899999999999999987 44444333 1 3 6799999998765 6777888899
Q ss_pred EEEEEcCCC
Q 001202 331 LTVWSVSGC 339 (1124)
Q Consensus 331 I~vWdv~~~ 339 (1124)
|-|+|+...
T Consensus 260 VlvyD~R~~ 268 (463)
T KOG1645|consen 260 VLVYDMRQP 268 (463)
T ss_pred EEEEEccCC
Confidence 999999643
No 303
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.005 Score=73.33 Aligned_cols=114 Identities=12% Similarity=0.148 Sum_probs=79.8
Q ss_pred eEEEEecCCcEEEEEecCCceEeeecccccee----cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEe
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS 296 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~----~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~ 296 (1124)
..-++...+++++.|++.+.+-+++-..++.. .+-...+ ...+|++..++|.|++.|.|.++-+.. ........
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~ 115 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDY 115 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCccee
Confidence 34455667777777777776666654443322 1223344 778999999999999999999999876 32221111
Q ss_pred eccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCC
Q 001202 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (1124)
Q Consensus 297 ~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~ 338 (1124)
.. .....|...|+|++||+||..+.+|...|+|..-.+..
T Consensus 116 ~t--~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 VT--PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ec--cccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11 11123788999999999999999999999998887766
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.0062 Score=73.45 Aligned_cols=189 Identities=17% Similarity=0.184 Sum_probs=113.5
Q ss_pred CCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEE
Q 001202 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1124)
Q Consensus 257 ~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWd 335 (1124)
.+++ |++++ ++.+|.|+-+|.|++++.+. .. .+.. . |... ..+|.++|||+.||+|.|-+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~--~~-~~~~----~----~s~~------~~~Gey~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG--NP-KTNF----D----HSSS------ILEGEYVASCSDDGKVVIGS 99 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC--cc-cccc----c----cccc------ccCCceEEEecCCCcEEEee
Confidence 4556 77766 45799999999999999764 22 2111 1 3332 56899999999999999999
Q ss_pred cCCCeeeEEeccCCcCceeeeEEcCCCCC-CcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCce
Q 001202 336 VSGCRLMSTIRQISLSSISSPIVKPNQDC-KYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMT 414 (1124)
Q Consensus 336 v~~~~l~~tl~~h~~~~V~s~~~sp~~~~-~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v 414 (1124)
+.+.+..+++.- ..++.+++++|+-.. .-..+++|+.. | +++..++
T Consensus 100 l~~~~~~~~~df--~rpiksial~Pd~~~~~sk~fv~GG~a-------g-lvL~er~----------------------- 146 (846)
T KOG2066|consen 100 LFTDDEITQYDF--KRPIKSIALHPDFSRQQSKQFVSGGMA-------G-LVLSERN----------------------- 146 (846)
T ss_pred ccCCccceeEec--CCcceeEEeccchhhhhhhheeecCcc-------e-EEEehhh-----------------------
Confidence 999888776654 357888999887210 00222222100 0 1111100
Q ss_pred eeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeEEEEcCCCcEEEecCcCc-
Q 001202 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQ- 493 (1124)
Q Consensus 415 ~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~vlwd~~sg~wk~f~~~~~- 493 (1124)
| +...+ +.......++|.++.| .|.++|-++.+|+-+||+.+++--.+-....
T Consensus 147 --w--lgnk~--------------------~v~l~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~ 200 (846)
T KOG2066|consen 147 --W--LGNKD--------------------SVVLSEGEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQ 200 (846)
T ss_pred --h--hcCcc--------------------ceeeecCccceEEEEe--cCcEEEEecCCCcEEEeccccceeeccCCCCC
Confidence 0 00011 1122334578999888 5999999999998899998876433221111
Q ss_pred -ee-eeEEEEEEecCCEEEEEEEecCCCeEEEEEeeC
Q 001202 494 -EQ-KIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 494 -e~-~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~ 528 (1124)
.+ +..-..+.|..+..++.+.. ..+++.+.
T Consensus 201 ~~R~e~fpphl~W~~~~~LVIGW~-----d~v~i~~I 232 (846)
T KOG2066|consen 201 SVRPELFPPHLHWQDEDRLVIGWG-----DSVKICSI 232 (846)
T ss_pred CCCcccCCCceEecCCCeEEEecC-----CeEEEEEE
Confidence 11 11123688976655554442 24555544
No 305
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.23 E-value=0.027 Score=64.02 Aligned_cols=123 Identities=19% Similarity=0.279 Sum_probs=94.2
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCC-eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcE
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRG-VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~Dg-tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I 331 (1124)
.+|...| -..+.-++.-++.|..|| .+-|||.++ +. .+.+. + .-|.|.+++.+|||+.++++.....+
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~-~e-~kr~e----~----~lg~I~av~vs~dGK~~vvaNdr~el 425 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG-GE-VKRIE----K----DLGNIEAVKVSPDGKKVVVANDRFEL 425 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCC-ce-EEEee----C----CccceEEEEEcCCCcEEEEEcCceEE
Confidence 5777778 778888888999999999 899999876 44 33333 2 57889999999999999999988889
Q ss_pred EEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEe----e---eEEEEeCCCCeEEEEecC
Q 001202 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG----T---SMMQWDEYGYRLYAIEEG 391 (1124)
Q Consensus 332 ~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg----~---~i~~W~~~~~~l~~~~~~ 391 (1124)
.+.|+.++.. ..+......-++...|||++ +.++-+ . .+++++..+++.+.+...
T Consensus 426 ~vididngnv-~~idkS~~~lItdf~~~~ns----r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ 487 (668)
T COG4946 426 WVIDIDNGNV-RLIDKSEYGLITDFDWHPNS----RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP 487 (668)
T ss_pred EEEEecCCCe-eEecccccceeEEEEEcCCc----eeEEEecCcceeeeeEEEEecCCCeEEEecCC
Confidence 9999988763 23333224568899999997 555432 2 788999999888876543
No 306
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.18 E-value=0.0048 Score=65.17 Aligned_cols=152 Identities=16% Similarity=0.092 Sum_probs=90.3
Q ss_pred CCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC-eeeEEeccCCcCceeeeEEcCCCCCCcceEEEee--------eEE
Q 001202 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--------SMM 376 (1124)
Q Consensus 306 h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~-~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~--------~i~ 376 (1124)
|+++-.+=+-|--++.++.|+.||.+.+.+...- +++..+..-+.+... ...-..+ +.+.++. ..+
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as-~~~~~~~----~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSAS-RKICRHG----NSILSGGCGNWNAQDNFY 162 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccc-cceeecc----cEEecCCcceEeecccee
Confidence 4444444444556788999999999999998651 111111110011000 0010111 3333321 334
Q ss_pred EEeCCCCeEEEEecCCcceE--EEEec--cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccce-eeccC
Q 001202 377 QWDEYGYRLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV-SYISQ 451 (1124)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v--~~~s~--~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~-~~~~~ 451 (1124)
.|+.+-...+.........| ++-.+ ...++.|+.||.+.+|+..+... |. .|..|
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--------------------p~S~l~ah 222 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--------------------PVSLLKAH 222 (319)
T ss_pred eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc--------------------hHHHHHHh
Confidence 45444333333322222334 33344 44567888999999999776643 54 45689
Q ss_pred CCceEEEEEcc-CCCEEEEEcCCCeE-EEEcCC
Q 001202 452 NWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 452 ~~~I~~va~Sp-dG~~lAvag~dG~v-lwd~~s 482 (1124)
..+|+.+-|+| ++..|.++++||.+ +||..+
T Consensus 223 k~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 223 KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999999997 68899999999999 999876
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.16 E-value=0.0015 Score=71.25 Aligned_cols=120 Identities=10% Similarity=0.102 Sum_probs=87.3
Q ss_pred CeE-EEEEccCCCEEEEEecCCeEEEEEcCCC----CceeEEEeeccCCCCCCCCCCeEEEEECC-CCCEEEEEECCCcE
Q 001202 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAES----ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGL 331 (1124)
Q Consensus 258 ~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~----~~~~~~l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I 331 (1124)
.-| +..|.-.+.++..|+.+|.|-++|+... +.+...+. |...|+|+.--. ++++|++.+.+|+|
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly---------h~Ssvtslq~Lq~s~q~LmaS~M~gki 323 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY---------HDSSVTSLQILQFSQQKLMASDMTGKI 323 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE---------cCcchhhhhhhccccceEeeccCcCce
Confidence 344 7778888899999999999999999763 23445555 888899987665 78899999999999
Q ss_pred EEEEcCCCee---eEEeccCCcCceeeeEEcCCCCC-CcceEEEee---eEEEEeCCCCeEEEEec
Q 001202 332 TVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDC-KYEPLMSGT---SMMQWDEYGYRLYAIEE 390 (1124)
Q Consensus 332 ~vWdv~~~~l---~~tl~~h~~~~V~s~~~sp~~~~-~~~~l~sg~---~i~~W~~~~~~l~~~~~ 390 (1124)
++||..--++ +.+..|| |+..+..|.+-. ....+++++ -.++|..+.++++.+.+
T Consensus 324 kLyD~R~~K~~~~V~qYeGH----vN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 324 KLYDLRATKCKKSVMQYEGH----VNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred eEeeehhhhcccceeeeecc----cccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 9999976555 8888888 333332222111 113444443 77899999999888764
No 308
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.11 E-value=0.1 Score=60.69 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=37.1
Q ss_pred eeCCeEEEEEc----------CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEee
Q 001202 28 KVNNGLLLIAS----------PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQ 97 (1124)
Q Consensus 28 S~dg~llA~~~----------~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~ 97 (1124)
||||++++... .+.+.|++.. .+. +...... .+....+.|||||+.||.... +.|.+++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~-~~~-~~~l~~~------~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIE-TGE-ITPLTPP------PPKLQDAKWSPDGKYIAFVRD-NNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETT-TTE-EEESS-E------ETTBSEEEE-SSSTEEEEEET-TEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecC-CCc-eEECcCC------ccccccceeecCCCeeEEEec-CceEEEECC
Confidence 67887665522 3368888886 322 1111111 355678999999999999864 567776654
No 309
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.10 E-value=0.0044 Score=73.48 Aligned_cols=214 Identities=14% Similarity=0.124 Sum_probs=128.7
Q ss_pred EEEEecCCcEEEEEecCCce--EeeeccccceecCCCCe--E-EEEEccC--CCEEEEEecCCeEEEEEcCCCCceeEEE
Q 001202 223 LFVLYSNGQLMSCSVSKKGL--KLAEFIKIDKELGSGDA--V-CASIAPE--QQILAVGTRRGVVELYDLAESASLIRTV 295 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i--~~wd~~~~~~~~gh~~~--v-~va~spd--g~lLAsGs~DgtV~vwd~~~~~~~~~~l 295 (1124)
.+.++|.|+-+++++.-+-. .+-+.-++.+|.-|..+ | .+.|||. -.+=++...+..-.+|++.......-.+
T Consensus 29 a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef 108 (1081)
T KOG0309|consen 29 AVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF 108 (1081)
T ss_pred ceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE
Confidence 44556777766665544322 22222334444444433 2 5667664 3344444455566789987633221112
Q ss_pred eeccCCCCCCCCCCeEEEEECCCC-CEEEEEECCCcEEEEEcCCCe-eeEEeccCCcCceeeeEEcCCCCCCcceEEEe-
Q 001202 296 SLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSG- 372 (1124)
Q Consensus 296 ~~~~~g~~~~h~g~V~~lawSPDG-~~Lasgs~Dg~I~vWdv~~~~-l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg- 372 (1124)
. -+| |+.+|+.+.|.|.. ..+|++|-|-.+-.||+.+.. .+.+...- .+..+.++|+.... ..+++.
T Consensus 109 ~--lhg----hsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w-~s~asqVkwnyk~p---~vlassh 178 (1081)
T KOG0309|consen 109 V--LHG----HSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW-RSAASQVKWNYKDP---NVLASSH 178 (1081)
T ss_pred E--Eec----CccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc-cccCceeeecccCc---chhhhcc
Confidence 2 226 99999999999865 489999999999999998753 33333221 23445566654431 334432
Q ss_pred -eeEEEEeCC-CCeEEEEecCCcceEEEEec----cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccce
Q 001202 373 -TSMMQWDEY-GYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV 446 (1124)
Q Consensus 373 -~~i~~W~~~-~~~l~~~~~~~~~~v~~~s~----~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~ 446 (1124)
-.+.+|+.. |+..+...++|...+..+.| -..+.+.+.|++++.|+....... +.
T Consensus 179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e-------------------~~ 239 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE-------------------SK 239 (1081)
T ss_pred CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc-------------------cc
Confidence 278899876 55667777788777776666 235678899999999996544331 22
Q ss_pred eeccCCCceEEEEEccCCC
Q 001202 447 SYISQNWPVQHVAASKDGM 465 (1124)
Q Consensus 447 ~~~~~~~~I~~va~SpdG~ 465 (1124)
.....+.||+--.+-|-|.
T Consensus 240 ~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 240 RTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred eeccccCcceeccccccCc
Confidence 2334556676666766554
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.095 Score=64.11 Aligned_cols=134 Identities=16% Similarity=0.247 Sum_probs=81.9
Q ss_pred CeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCE-EEEEECCCcEEEEE
Q 001202 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA-FAVGWKSRGLTVWS 335 (1124)
Q Consensus 258 ~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~-Lasgs~Dg~I~vWd 335 (1124)
.++ ++++|.+-+.+|+|-.||.|..+.-+-............ .-.++|+.+++..||+. ++++.. ..|.+++
T Consensus 126 ~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~-----~~~~pITgL~~~~d~~s~lFv~Tt-~~V~~y~ 199 (933)
T KOG2114|consen 126 SPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSH-----RGKEPITGLALRSDGKSVLFVATT-EQVMLYS 199 (933)
T ss_pred CcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeec-----cCCCCceeeEEecCCceeEEEEec-ceeEEEE
Confidence 345 899999999999999999999987432110000111111 13678999999999987 344333 4799999
Q ss_pred cCCCe-eeEEeccCCcCceeeeEEcCCCCCCcceEEEee-eEEEEeCCCCeEEEEec-CCcceEEEEec
Q 001202 336 VSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE-GSSERVLIFSF 401 (1124)
Q Consensus 336 v~~~~-l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~-~i~~W~~~~~~l~~~~~-~~~~~v~~~s~ 401 (1124)
+.+.. ..+++..| ...+++..+++.. ++.+.+|+ -+-+++..+..+-.... |+...+..+++
T Consensus 200 l~gr~p~~~~ld~~-G~~lnCss~~~~t---~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~ 264 (933)
T KOG2114|consen 200 LSGRTPSLKVLDNN-GISLNCSSFSDGT---YQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSF 264 (933)
T ss_pred ecCCCcceeeeccC-CccceeeecCCCC---ccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEec
Confidence 98665 34456555 3456676666553 24555555 55566666544333333 54444444443
No 311
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.99 E-value=0.49 Score=51.94 Aligned_cols=92 Identities=15% Similarity=0.278 Sum_probs=63.2
Q ss_pred EEEEccCCCEE-EEEecCCeEEEEEcCCCCcee---EEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEc
Q 001202 261 CASIAPEQQIL-AVGTRRGVVELYDLAESASLI---RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1124)
Q Consensus 261 ~va~spdg~lL-AsGs~DgtV~vwd~~~~~~~~---~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv 336 (1124)
.++|+|+++.| ++-+..+.|..|+++..+..+ +.+. +.. .-.+..-.+++.++|+..++.+..+.|.+++.
T Consensus 138 Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~--~~~---~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFI--DFP---GGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp EEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEE--E-S---SSSCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred ceEECCcchheeecccccceeEEEeccccccceeeeeeEE--EcC---CCCcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 79999999865 466778899999987534312 2221 111 01234678999999999999998999999999
Q ss_pred CCCeeeEEeccCCcCceeeeEEc
Q 001202 337 SGCRLMSTIRQISLSSISSPIVK 359 (1124)
Q Consensus 337 ~~~~l~~tl~~h~~~~V~s~~~s 359 (1124)
. ++++..+.-. ...+++++|.
T Consensus 213 ~-G~~~~~i~~p-~~~~t~~~fg 233 (246)
T PF08450_consen 213 D-GKLLREIELP-VPRPTNCAFG 233 (246)
T ss_dssp T-SCEEEEEE-S-SSSEEEEEEE
T ss_pred C-ccEEEEEcCC-CCCEEEEEEE
Confidence 8 5566666544 3467888883
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.96 E-value=0.15 Score=56.90 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=43.4
Q ss_pred CCCCeE-EEEEccCCCEEEEEe-cCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC
Q 001202 255 GSGDAV-CASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1124)
Q Consensus 255 gh~~~v-~va~spdg~lLAsGs-~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~ 327 (1124)
.-.+.+ +|++++++.++|+.| ..|.+.+||..+ +..+....+. -+..++-.++| +++|.+.
T Consensus 214 ~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~----------D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 214 RLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLP----------DACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred hhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccccC----------ceeeeeecCCc-eEEeCCC
Confidence 345677 999999999886655 677999999988 7776655432 26777777777 5555443
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.95 E-value=0.33 Score=61.80 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=48.8
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEE
Q 001202 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (1124)
Q Consensus 259 ~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~v 333 (1124)
.+++.|-.+..-+.++..+|.|.+-|..+ .. +... | .-.++|.+++||||+..++....++++-+
T Consensus 71 i~s~~fl~d~~~i~v~~~~G~iilvd~et-~~-~eiv-----g---~vd~GI~aaswS~Dee~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALGDIILVDPET-LE-LEIV-----G---NVDNGISAASWSPDEELLALITGRQTLLF 135 (1265)
T ss_pred eEEEEEecccceEEEEecCCcEEEEcccc-cc-eeee-----e---eccCceEEEeecCCCcEEEEEeCCcEEEE
Confidence 34888888888899999999999887655 21 1111 1 13456999999999999998888777754
No 314
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0026 Score=74.76 Aligned_cols=73 Identities=21% Similarity=0.371 Sum_probs=59.2
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeE-EEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001202 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~-~lawSPDG~~Lasgs~Dg~I~vWdv~~~ 339 (1124)
-+.|||.-.+||.+..+|.|-++.++- +.+-++.. |...|+ +++|.|||+.||+|-.||+|++-|++++
T Consensus 25 ~~ewnP~~dLiA~~t~~gelli~R~n~--qRlwtip~--------p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 25 RIEWNPKMDLIATRTEKGELLIHRLNW--QRLWTIPI--------PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred EEEEcCccchhheeccCCcEEEEEecc--ceeEeccC--------CCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 789999999999999999999988863 22333431 333455 9999999999999999999999999987
Q ss_pred eeeE
Q 001202 340 RLMS 343 (1124)
Q Consensus 340 ~l~~ 343 (1124)
..+.
T Consensus 95 ~~l~ 98 (665)
T KOG4640|consen 95 GRLV 98 (665)
T ss_pred Ccee
Confidence 6543
No 315
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.91 E-value=0.0037 Score=66.04 Aligned_cols=74 Identities=22% Similarity=0.353 Sum_probs=59.5
Q ss_pred CeE-EEEEccC-CCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECC-CCCEEEEEECCCcEEEE
Q 001202 258 DAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVW 334 (1124)
Q Consensus 258 ~~v-~va~spd-g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I~vW 334 (1124)
++| +++-+|. ..++++|+.||.+-+||++...-....++ +|+.+++.+-|+| ++..|+++++||.+.-|
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~--------ahk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK--------AHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH--------HhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 457 8888885 56788999999999999987322222222 4899999999999 68899999999999999
Q ss_pred EcCCC
Q 001202 335 SVSGC 339 (1124)
Q Consensus 335 dv~~~ 339 (1124)
|..+.
T Consensus 252 das~~ 256 (319)
T KOG4714|consen 252 DASTT 256 (319)
T ss_pred cCCCc
Confidence 99874
No 316
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.83 E-value=0.014 Score=62.97 Aligned_cols=223 Identities=13% Similarity=0.148 Sum_probs=116.8
Q ss_pred CeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeE----EEeeccCCC----CCCCCCCeEEEEECCCCC--EEEEEE
Q 001202 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIR----TVSLYDWGY----SMDDTGPVSCIAWTPDNS--AFAVGW 326 (1124)
Q Consensus 258 ~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~----~l~~~~~g~----~~~h~g~V~~lawSPDG~--~Lasgs 326 (1124)
+.+ +|.|...|.++|+|...|.|.+|.-.....+.. .+..++..+ +-+-...|..+.|-.++. .+....
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 445 899999999999999999999998655222211 122111000 111234588899987654 555666
Q ss_pred CCCcEEEEEcCCCeeeE---------------------------Eec---------------cCCcCceeeeEEcCCCCC
Q 001202 327 KSRGLTVWSVSGCRLMS---------------------------TIR---------------QISLSSISSPIVKPNQDC 364 (1124)
Q Consensus 327 ~Dg~I~vWdv~~~~l~~---------------------------tl~---------------~h~~~~V~s~~~sp~~~~ 364 (1124)
.|++|++|.+....+.- .+. ..|.-.++++.+..+.
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~-- 184 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK-- 184 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch--
Confidence 78999999985431100 000 1112234556665554
Q ss_pred CcceEEEee--eEEEEeCCC---CeEEEEecCCcc-----eE--EEEec--cceEEeeccCCceeeeEeeecCCeEEEee
Q 001202 365 KYEPLMSGT--SMMQWDEYG---YRLYAIEEGSSE-----RV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (1124)
Q Consensus 365 ~~~~l~sg~--~i~~W~~~~---~~l~~~~~~~~~-----~v--~~~s~--~k~~~s~s~d~~v~~w~l~~~~~~l~l~~ 430 (1124)
+.++|+. .+-+|.++- .--++-...|.- -| ..|++ ...+.-.+..|.+++-++.+..--. ..
T Consensus 185 --et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd--n~ 260 (460)
T COG5170 185 --ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD--NS 260 (460)
T ss_pred --heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc--Cc
Confidence 6667655 777887752 112222223210 01 23333 2223334556778877766532100 00
Q ss_pred cCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeEEEEcCCCcEEEe
Q 001202 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVF 488 (1124)
Q Consensus 431 ~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~vlwd~~sg~wk~f 488 (1124)
. ..-...-..+. ..-+.+-...|..+.||++|+|+++-..-..-+||++..+-..+
T Consensus 261 ~-klfe~~~D~v~-~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pik 316 (460)
T COG5170 261 K-KLFELTIDGVD-VDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIK 316 (460)
T ss_pred h-hhhhhccCccc-chhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCce
Confidence 0 00000000000 00111223457788999999999876544433999987654333
No 317
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.82 E-value=0.41 Score=57.04 Aligned_cols=108 Identities=16% Similarity=0.177 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHcCCCCCchHHHHHHHHHHhhcccccccccccccCCccccchhhhHHHHHHHhHcCch
Q 001202 761 LHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPE 840 (1124)
Q Consensus 761 L~~il~~ll~~~~~~~a~~~a~~~~~l~~F~h~LE~lLh~vle~e~~~~~~~~~~~~i~~~~~~~~ll~~v~~fi~~f~~ 840 (1124)
-+.++++|-++|..+.|+++++ .|+ .-....+++ +
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~-----------------------------------D~~-----~rFeLAl~l-----g 332 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT-----------------------------------DPD-----HRFELALQL-----G 332 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS------------------------------------HH-----HHHHHHHHC-----T
T ss_pred HHHHHHHHHHCCCHHHHHhhcC-----------------------------------ChH-----HHhHHHHhc-----C
Confidence 4667888888999999997743 121 223333322 3
Q ss_pred hHHHHHhhccccc-ccchHHHHhhcCChHHHHHHHHhcCcHHHHhhHHhhhhhccCch------hhHHHHHHHHHHHHhc
Q 001202 841 YLNVVVSVARKTD-GRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPA------VSQYSALRLLQATLDE 913 (1124)
Q Consensus 841 ~l~ivv~caRKtE-~~~W~~LF~~~g~P~~Lf~~cl~~~~l~taa~yLivl~n~e~~~------~~~~~a~~Ll~~al~~ 913 (1124)
=|++...+|++++ ...|+.| -+.+|+.|+++.|-.++-=..++++.. -.++...+|.+.|.++
T Consensus 333 ~L~~A~~~a~~~~~~~~W~~L----------g~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 333 NLDIALEIAKELDDPEKWKQL----------GDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp -HHHHHHHCCCCSTHHHHHHH----------HHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCcHHHHHHH----------HHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 3788888999987 5577765 566888888888887765444444332 2467788888899999
Q ss_pred ccHhHHHHHH
Q 001202 914 CLYELAGELV 923 (1124)
Q Consensus 914 ~~w~l~~eL~ 923 (1124)
+++..++.-.
T Consensus 403 ~~~n~af~~~ 412 (443)
T PF04053_consen 403 GDINIAFQAA 412 (443)
T ss_dssp T-HHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9988776543
No 318
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.81 E-value=0.9 Score=53.98 Aligned_cols=70 Identities=24% Similarity=0.309 Sum_probs=45.6
Q ss_pred CCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEE-EecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeC
Q 001202 451 QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 451 ~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk-~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~ 528 (1124)
..+++..+++||+|+++|.-..+|.+ +.+..-.+-- .+... .......|.|.|+-.|+..+. .++.++..
T Consensus 215 ~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~---~~~~p~~~~WCG~dav~l~~~-----~~l~lvg~ 286 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD---SKSPPKQMAWCGNDAVVLSWE-----DELLLVGP 286 (410)
T ss_pred CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC---cCCCCcEEEEECCCcEEEEeC-----CEEEEECC
Confidence 35689999999999999999999998 7765433211 11111 111245799998766655441 25666644
No 319
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.78 E-value=0.18 Score=56.18 Aligned_cols=94 Identities=14% Similarity=0.238 Sum_probs=60.6
Q ss_pred EEEEcc-CCCEEEEEecCCeE-EEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC-----CCcEEE
Q 001202 261 CASIAP-EQQILAVGTRRGVV-ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-----SRGLTV 333 (1124)
Q Consensus 261 ~va~sp-dg~lLAsGs~DgtV-~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~-----Dg~I~v 333 (1124)
.++.+| +...+|++-.-|+. .+||..+ ++....+...+ + -|- -=.-.|||||++|.+.=. .|.|-|
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~-g~~~~~~~a~~-g---RHF--yGHg~fs~dG~~LytTEnd~~~g~G~IgV 81 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRT-GQLLQRLWAPP-G---RHF--YGHGVFSPDGRLLYTTENDYETGRGVIGV 81 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCC-CceeeEEcCCC-C---CEE--ecCEEEcCCCCEEEEeccccCCCcEEEEE
Confidence 467788 67788888888864 6889887 66665554211 1 010 012579999999988633 478999
Q ss_pred EEcC-CCeeeEEeccCCcCceeeeEEcCCC
Q 001202 334 WSVS-GCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 334 Wdv~-~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
||+. +-+.+..+..|+-. --.+.+.|++
T Consensus 82 yd~~~~~~ri~E~~s~GIG-PHel~l~pDG 110 (305)
T PF07433_consen 82 YDAARGYRRIGEFPSHGIG-PHELLLMPDG 110 (305)
T ss_pred EECcCCcEEEeEecCCCcC-hhhEEEcCCC
Confidence 9998 55666666655322 2234456665
No 320
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0063 Score=71.70 Aligned_cols=76 Identities=21% Similarity=0.292 Sum_probs=63.0
Q ss_pred ceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccceecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCC
Q 001202 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE 287 (1124)
Q Consensus 209 ~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~ 287 (1124)
..|.-++|+|.+...+..+.+|.+++...+ --|+|+...+ | .+.+ +++|.|||++||+|-.||+|++.|+.+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p----~-~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIP----G-ENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCC----C-CccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 457789999999999999999999887776 5678887643 1 2344 999999999999999999999999988
Q ss_pred CCcee
Q 001202 288 SASLI 292 (1124)
Q Consensus 288 ~~~~~ 292 (1124)
+..+
T Consensus 94 -~~~l 97 (665)
T KOG4640|consen 94 -GGRL 97 (665)
T ss_pred -CCce
Confidence 4433
No 321
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.62 E-value=2 Score=50.74 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=44.4
Q ss_pred CCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECC--CCCEEEEEECCCcEEEEEcCCCeeeEEe
Q 001202 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (1124)
Q Consensus 268 g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP--DG~~Lasgs~Dg~I~vWdv~~~~l~~tl 345 (1124)
+..+.+++.+|.+..+|.++ ++.+-+... .+.+.+ +| .+..+.++..++.+...|..+|+.+.+.
T Consensus 120 ~~~v~v~~~~g~l~ald~~t-G~~~W~~~~---------~~~~~s---sP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAED-GEVAWQTKV---------AGEALS---RPVVSDGLVLVHTSNGMLQALNESDGAVKWTV 186 (394)
T ss_pred CCEEEEEcCCCEEEEEECCC-CCCcccccC---------CCceec---CCEEECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 45667788899999999887 665544331 111111 11 2345666777889999999998887776
Q ss_pred cc
Q 001202 346 RQ 347 (1124)
Q Consensus 346 ~~ 347 (1124)
..
T Consensus 187 ~~ 188 (394)
T PRK11138 187 NL 188 (394)
T ss_pred cC
Confidence 53
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.013 Score=70.93 Aligned_cols=149 Identities=16% Similarity=0.293 Sum_probs=96.7
Q ss_pred eEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEE
Q 001202 134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (1124)
Q Consensus 134 ~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~ 213 (1124)
.++|.+..+..++.||-+|.+++..-++.....+ .+
T Consensus 41 ~is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~--------------------------------------~~------ 76 (846)
T KOG2066|consen 41 AISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNF--------------------------------------DH------ 76 (846)
T ss_pred HHHHHHhhcceeeeccccceEEEEecCCcccccc--------------------------------------cc------
Confidence 3566667788899999999999876665431111 00
Q ss_pred EEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee--cCCCCeE-EEEEccC-----CCEEEEEecCCeEEEEEc
Q 001202 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPE-----QQILAVGTRRGVVELYDL 285 (1124)
Q Consensus 214 i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~--~gh~~~v-~va~spd-----g~lLAsGs~DgtV~vwd~ 285 (1124)
++. .-+|.++++++.|+++.+-...+.+.. ..-..++ +++++|+ .+.+++|+.-| +.++.-
T Consensus 77 ---s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er 145 (846)
T KOG2066|consen 77 ---SSS-------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSER 145 (846)
T ss_pred ---ccc-------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehh
Confidence 000 246777777777776666555444322 2234566 9999998 45789999888 777764
Q ss_pred CCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEecc
Q 001202 286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 286 ~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~ 347 (1124)
.--+. .....+. +-.|+|.++.|. |+++|=++.+ +|+|+|+..++.+..+..
T Consensus 146 ~wlgn-k~~v~l~------~~eG~I~~i~W~--g~lIAWand~-Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 146 NWLGN-KDSVVLS------EGEGPIHSIKWR--GNLIAWANDD-GVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred hhhcC-ccceeee------cCccceEEEEec--CcEEEEecCC-CcEEEeccccceeeccCC
Confidence 32111 1111111 257999999995 7888877765 899999998877666654
No 323
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.28 E-value=0.029 Score=67.68 Aligned_cols=69 Identities=19% Similarity=0.343 Sum_probs=58.8
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcC
Q 001202 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (1124)
Q Consensus 260 v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~ 337 (1124)
+++.|+|..-.||+|..-|.+.+|...+ +..++... .|+.++..+.|||||.++.++..=|.+-+|...
T Consensus 63 tSLCWHpe~~vLa~gwe~g~~~v~~~~~--~e~htv~~-------th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 63 TSLCWHPEEFVLAQGWEMGVSDVQKTNT--TETHTVVE-------THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhccChHHHHHhhccccceeEEEecCC--ceeeeecc-------CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 3789999999999999999999999765 22333331 299999999999999999999999999999875
No 324
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.23 E-value=0.0035 Score=75.49 Aligned_cols=196 Identities=15% Similarity=0.147 Sum_probs=118.3
Q ss_pred cccceEEEEee--cCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCC
Q 001202 130 EKGLSVSNIVS--DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (1124)
Q Consensus 130 ~~~~~v~~i~~--d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~ 207 (1124)
.++..-+|++. +.+++++|+-+|.++++.-+...... ....|
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~------------------------------------s~ncH 1142 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE------------------------------------SVNCH 1142 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccc------------------------------------ccccc
Confidence 34444556554 45789999999999987544321110 12356
Q ss_pred CceEEEEEecCCcceEEEEecCCcEEEEEecCC--ceEeeeccccceecCCC-CeE-EEEEccCCCEEEEEecCCeEEEE
Q 001202 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK--GLKLAEFIKIDKELGSG-DAV-CASIAPEQQILAVGTRRGVVELY 283 (1124)
Q Consensus 208 ~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~--~i~~wd~~~~~~~~gh~-~~v-~va~spdg~lLAsGs~DgtV~vw 283 (1124)
+++|+.++-+ -||...++.+.-. -..+|+....-. .-|+ +.- |+.|+..-..-|.|+......||
T Consensus 1143 ~SavT~vePs----------~dgs~~Ltsss~S~PlsaLW~~~s~~~-~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~Y 1211 (1516)
T KOG1832|consen 1143 QSAVTLVEPS----------VDGSTQLTSSSSSSPLSALWDASSTGG-PRHSFDEDKAVKFSNSLQFRALGTEADDALLY 1211 (1516)
T ss_pred cccccccccc----------CCcceeeeeccccCchHHHhccccccC-ccccccccceeehhhhHHHHHhcccccceEEE
Confidence 7777776665 5666666555332 235677543211 1232 222 88898876666677777788999
Q ss_pred EcCCCCceeEE-EeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 284 DLAESASLIRT-VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 284 d~~~~~~~~~~-l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
|+.+ +..+.+ +.- ..+ ....-++..|||+...+.- || -+||+...+-++.+... . ---+-.|+|.+
T Consensus 1212 DvqT-~~~l~tylt~-~~~----~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~f-t-~~~~G~FHP~g 1278 (1516)
T KOG1832|consen 1212 DVQT-CSPLQTYLTD-TVT----SSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQF-T-DYGGGGFHPSG 1278 (1516)
T ss_pred eccc-CcHHHHhcCc-chh----hhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhh-e-ecccccccCCC
Confidence 9998 554444 320 001 2223378899999988763 33 27999877666655443 1 11122478887
Q ss_pred CCCcceEEEeeeEEEEeCCCCeEEEEecC
Q 001202 363 DCKYEPLMSGTSMMQWDEYGYRLYAIEEG 391 (1124)
Q Consensus 363 ~~~~~~l~sg~~i~~W~~~~~~l~~~~~~ 391 (1124)
..++ +..-+||..+.+++.....
T Consensus 1279 ----~eVI--INSEIwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1279 ----NEVI--INSEIWDMRTFKLLHSVPS 1301 (1516)
T ss_pred ----ceEE--eechhhhhHHHHHHhcCcc
Confidence 4444 4666899999988776543
No 325
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.17 E-value=0.013 Score=42.07 Aligned_cols=30 Identities=30% Similarity=0.691 Sum_probs=28.5
Q ss_pred CCCCeEEEEECCCCCEEEEEECCCcEEEEE
Q 001202 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1124)
Q Consensus 306 h~g~V~~lawSPDG~~Lasgs~Dg~I~vWd 335 (1124)
|.+.|.+++|+|++..+++++.|+.+++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 788899999999999999999999999996
No 326
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.17 E-value=0.014 Score=64.14 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=75.2
Q ss_pred cCCcEEEEEecCCceEeeecccc---cee----cCCCCeE-EEEEcc-CCCEEEEEecCCeEEEEEcCCCCce---eEEE
Q 001202 228 SNGQLMSCSVSKKGLKLAEFIKI---DKE----LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASL---IRTV 295 (1124)
Q Consensus 228 ~dG~~~~~~~~d~~i~~wd~~~~---~~~----~gh~~~v-~va~sp-dg~lLAsGs~DgtV~vwd~~~~~~~---~~~l 295 (1124)
..+.+++.|...+.|-..|.... ..| .-|..+| |+..=. +++.|.+.+.+|+|++||... .++ +.+.
T Consensus 262 ~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qY 340 (425)
T KOG2695|consen 262 GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQY 340 (425)
T ss_pred ccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeee
Confidence 44666666666666666665432 112 4577788 775544 567777778999999999986 555 4444
Q ss_pred eeccCCCCCCCCCCeEEE--EECCCCCEEEEEECCCcEEEEEcCCCeeeEEecc
Q 001202 296 SLYDWGYSMDDTGPVSCI--AWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 296 ~~~~~g~~~~h~g~V~~l--awSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~ 347 (1124)
. | |...-.-+ -..|....+++++.|...|||++..+.+++++.-
T Consensus 341 e----G----HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 341 E----G----HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred e----c----ccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 4 4 53221111 2234556788899999999999999999999864
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.13 E-value=1.7 Score=50.68 Aligned_cols=75 Identities=12% Similarity=0.151 Sum_probs=47.0
Q ss_pred CceEEEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeCh---------HH-Hh-h-hcceeEEEEecCCcEEEEEeCC
Q 001202 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDS---------ES-VQ-R-EGENLQAVWSPDTKLIAVVTSS 88 (1124)
Q Consensus 21 ~~~iv~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~---------~s-l~-~-~G~~~~v~wSPDg~~Lav~t~d 88 (1124)
...-..+||||+.+|.+.++.|.+++.. .+ ....++... +- .+ + .+....+.|||||++||....|
T Consensus 44 ~~~~~~~sP~g~~~~~v~~~nly~~~~~-~~-~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 44 KLQDAKWSPDGKYIAFVRDNNLYLRDLA-TG-QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TBSEEEE-SSSTEEEEEETTEEEEESST-TS-EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred ccccceeecCCCeeEEEecCceEEEECC-CC-CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 3556789999999999999999999874 33 222222211 10 11 2 4566789999999999886644
Q ss_pred -CeEEEEEee
Q 001202 89 -LYLHIFKVQ 97 (1124)
Q Consensus 89 -g~l~i~~v~ 97 (1124)
..++.+.+.
T Consensus 122 ~~~v~~~~~~ 131 (353)
T PF00930_consen 122 EREVPEYPLP 131 (353)
T ss_dssp -TTS-EEEEE
T ss_pred CcCCceEEee
Confidence 445555553
No 328
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.031 Score=63.31 Aligned_cols=202 Identities=11% Similarity=0.074 Sum_probs=120.4
Q ss_pred CCcEEEEEecCCceEeeeccc--ccee----cCCCCeE-EEEEccCCCEEEEEec-CCeEEEEEcCCCCceeEEEeeccC
Q 001202 229 NGQLMSCSVSKKGLKLAEFIK--IDKE----LGSGDAV-CASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYDW 300 (1124)
Q Consensus 229 dG~~~~~~~~d~~i~~wd~~~--~~~~----~gh~~~v-~va~spdg~lLAsGs~-DgtV~vwd~~~~~~~~~~l~~~~~ 300 (1124)
--++..+++-|+..+.|.-.. +-.. ..|...+ +++.|-++.+..+++. |..+|++|+.+ ...+.-+++...
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn-~DminmiKL~~l 97 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN-FDMINMIKLVDL 97 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec-cchhhhcccccC
Confidence 345677778888888885432 1111 3566666 8899999999999888 99999999987 333322232221
Q ss_pred CCCCCCCCCeEEEEECCC-CC-EEEEEE-CCCcEEEEEcCCCe-eeEEeccCCcCceeeeEEcCCCCCCcceEEEee---
Q 001202 301 GYSMDDTGPVSCIAWTPD-NS-AFAVGW-KSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (1124)
Q Consensus 301 g~~~~h~g~V~~lawSPD-G~-~Lasgs-~Dg~I~vWdv~~~~-l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~--- 373 (1124)
.|.+.+ ..+|. -. .+|++. .++.+-|+|-.+.. ..+-+.+.+.++|..+.+.|.+ +...|..
T Consensus 98 ------Pg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~----Ds~vSiD~~g 166 (558)
T KOG0882|consen 98 ------PGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG----DSAVSIDISG 166 (558)
T ss_pred ------CCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc----cceeeccccc
Confidence 122222 22332 11 444444 45889999987654 4555555447788888887776 4444322
Q ss_pred eEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCC
Q 001202 374 SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (1124)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~ 453 (1124)
.+-.|.+++. +.-.. +.-.|.+....+ ...+.....
T Consensus 167 mVEyWs~e~~--~qfPr----------------------~~l~~~~K~eTd--------------------Ly~f~K~Kt 202 (558)
T KOG0882|consen 167 MVEYWSAEGP--FQFPR----------------------TNLNFELKHETD--------------------LYGFPKAKT 202 (558)
T ss_pred eeEeecCCCc--ccCcc----------------------ccccccccccch--------------------hhccccccc
Confidence 4566776541 00000 000122221111 011111223
Q ss_pred ceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEE
Q 001202 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (1124)
Q Consensus 454 ~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk 486 (1124)
...++.|||+|..+++-+.|..| +++..+|+..
T Consensus 203 ~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 203 EPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred CccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 35679999999999999999999 9999998753
No 329
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.09 E-value=0.75 Score=49.78 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=63.3
Q ss_pred cCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEe
Q 001202 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (1124)
Q Consensus 266 pdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl 345 (1124)
+++..+.+++.++.+..||..+ ++.+........ .... . ..++..++++..|+.+..+|..+++...+.
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~~~~-----~~~~----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKT-GKVLWRFDLPGP-----ISGA----P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTT-SEEEEEEECSSC-----GGSG----E-EEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred EeCCEEEEEcCCCEEEEEECCC-CCEEEEeecccc-----ccce----e-eecccccccccceeeeEecccCCcceeeee
Confidence 3555666668999999999988 776666653211 0111 1 234566777778889999999898888774
Q ss_pred -ccCC-c-CceeeeEEcCCCCCCcceEEEe--eeEEEEeCCCCeEEEEe
Q 001202 346 -RQIS-L-SSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIE 389 (1124)
Q Consensus 346 -~~h~-~-~~V~s~~~sp~~~~~~~~l~sg--~~i~~W~~~~~~l~~~~ 389 (1124)
.... . ...........+ ...++.. ..+..+++++++++-..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 103 YLTSSPPAGVRSSSSPAVDG---DRLYVGTSSGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EE-SSCTCSTB--SEEEEET---TEEEEEETCSEEEEEETTTTEEEEEE
T ss_pred ccccccccccccccCceEec---CEEEEEeccCcEEEEecCCCcEEEEe
Confidence 3220 0 001111111112 0223322 27788888877765444
No 330
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.97 E-value=0.0051 Score=74.18 Aligned_cols=188 Identities=11% Similarity=0.080 Sum_probs=112.1
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC-CC-c
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SR-G 330 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~-Dg-~ 330 (1124)
..|+... |++|+-+.+.|++|+-.|.|++|++.+ |....... + |..+|+-+.=|-||..+.+.+. .. -
T Consensus 1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~n----c----H~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVN----C----HQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hccccceeeEEeecCCceEEeeeccceEEEEEccC-cccccccc----c----cccccccccccCCcceeeeeccccCch
Confidence 3566666 999999999999999999999999998 65554444 4 9999999999999996665443 22 5
Q ss_pred EEEEEcCC-CeeeEEeccCCcCceeeeEEcCCCCCCcceEEE-eeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEee
Q 001202 331 LTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS-GTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNR 408 (1124)
Q Consensus 331 I~vWdv~~-~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~s-g~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~ 408 (1124)
..+|+... +...+++.+. ..+.|+... ....+-+ +....++|.+++..+.+.-. .+...+..+.+++-
T Consensus 1169 saLW~~~s~~~~~Hsf~ed-----~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt---~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDED-----KAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLT---DTVTSSYSNNLAHF 1238 (1516)
T ss_pred HHHhccccccCcccccccc-----ceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcC---cchhhhhhcccccc
Confidence 67898853 3445555542 345555432 1112222 12777899888766554211 12233334455555
Q ss_pred ccCCceeeeEeeecCCeEEEeecCCCccceeeeccc--ceeeccCCCceEEEEEccCCCEEEEEcCCCeEEEEcCC
Q 001202 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL--PVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQ 482 (1124)
Q Consensus 409 s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~--p~~~~~~~~~I~~va~SpdG~~lAvag~dG~vlwd~~s 482 (1124)
+++.+..+|+- ..|..... ...|-..+. --.-.|+|.|.-+++-+ -+||++|
T Consensus 1239 sP~D~LIlndG-----------------vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS----EIwD~RT 1292 (1516)
T KOG1832|consen 1239 SPCDTLILNDG-----------------VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS----EIWDMRT 1292 (1516)
T ss_pred CCCcceEeeCc-----------------eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec----hhhhhHH
Confidence 66555544431 11211100 111111110 11236899999888754 2799977
No 331
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.96 E-value=3.3 Score=45.32 Aligned_cols=128 Identities=10% Similarity=0.074 Sum_probs=74.0
Q ss_pred Eec-CCcEEEEEecCCceEeeecccccee-cCCCCeEEEEEc-cCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCC
Q 001202 226 LYS-NGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVCASIA-PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (1124)
Q Consensus 226 ~s~-dG~~~~~~~~d~~i~~wd~~~~~~~-~gh~~~v~va~s-pdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~ 302 (1124)
+.+ +|.++++....+.+..|+..+.+.. .....+..+++. ++++++++ ..+ .+.++|..+ ++......... +
T Consensus 7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~-g~~~~~~~~~~-~- 81 (246)
T PF08450_consen 7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVA-DSG-GIAVVDPDT-GKVTVLADLPD-G- 81 (246)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEE-ETT-CEEEEETTT-TEEEEEEEEET-T-
T ss_pred EECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEE-EcC-ceEEEecCC-CcEEEEeeccC-C-
Confidence 344 6777777777777777776655432 122236677888 67665554 444 445568776 54433333211 1
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEECC--------CcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 303 SMDDTGPVSCIAWTPDNSAFAVGWKS--------RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 303 ~~~h~g~V~~lawSPDG~~Lasgs~D--------g~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
.......+.+++.|+|+..++.... |.+..++.. ++......+ ....+.++|+|++
T Consensus 82 -~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pNGi~~s~dg 145 (246)
T PF08450_consen 82 -GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPNGIAFSPDG 145 (246)
T ss_dssp -CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEEEEEEETTS
T ss_pred -CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cccccceEECCcc
Confidence 0023457899999999987776644 446666666 443333322 3456788888887
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=1.6 Score=53.93 Aligned_cols=80 Identities=10% Similarity=0.193 Sum_probs=54.7
Q ss_pred CCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCce-eEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEE
Q 001202 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (1124)
Q Consensus 257 ~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~-~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vW 334 (1124)
.++| .+++..+++.+.....-..|.+|.+.. ..+ ..++. +|..+++|.++++-...+++|+. ..+.+|
T Consensus 171 ~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld--------~~G~~lnCss~~~~t~qfIca~~-e~l~fY 240 (933)
T KOG2114|consen 171 KEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLKVLD--------NNGISLNCSSFSDGTYQFICAGS-EFLYFY 240 (933)
T ss_pred CCCceeeEEecCCceeEEEEecceeEEEEecC-CCcceeeec--------cCCccceeeecCCCCccEEEecC-ceEEEE
Confidence 4566 999999988755555556899999985 332 22233 26678999999876554555554 389999
Q ss_pred EcCCCeeeEEec
Q 001202 335 SVSGCRLMSTIR 346 (1124)
Q Consensus 335 dv~~~~l~~tl~ 346 (1124)
+..+.....++.
T Consensus 241 ~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 241 DSDGRGPCFAFE 252 (933)
T ss_pred cCCCcceeeeec
Confidence 998876655655
No 333
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.67 E-value=1.8 Score=52.54 Aligned_cols=101 Identities=20% Similarity=0.229 Sum_probs=68.2
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCe
Q 001202 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~ 340 (1124)
--+++..+++++.|+.-|.+.+|+-.. +. .+.++ .-| ..+.+..+..|++..++|.|+..|.|.|+-+..+.
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~-~~-~~~~~--~~~----~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHT-GE-MRKLK--NEG----ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCc-hh-hhccc--ccC----ccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 345667788999999999999999654 33 22222 112 45667778899999999999999999999876532
Q ss_pred ---eeE--EeccCCcCceeeeEEcCCCCCCcceEEEee
Q 001202 341 ---LMS--TIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1124)
Q Consensus 341 ---l~~--tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~ 373 (1124)
++. .....|...|++++|++++ ..+.+|.
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~----~k~ysGD 143 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNG----MKLYSGD 143 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccc----cEEeecC
Confidence 121 1112125667777777776 5555543
No 334
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.66 E-value=4.5 Score=47.84 Aligned_cols=74 Identities=14% Similarity=0.075 Sum_probs=41.4
Q ss_pred CEEEEEecCCeEEEEEcCCCCceeEEEeecc-CCCCCCCCCCeEEEEECC--CCCEEEEEECCCcEEEEEcCCCeeeEEe
Q 001202 269 QILAVGTRRGVVELYDLAESASLIRTVSLYD-WGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (1124)
Q Consensus 269 ~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~-~g~~~~h~g~V~~lawSP--DG~~Lasgs~Dg~I~vWdv~~~~l~~tl 345 (1124)
..+..++.+|.+..+|..+ ++..-...... .+ .........+.-+| .+..+..++.+|.+...|..+++.+.+.
T Consensus 206 ~~v~~~~~~g~v~a~d~~~-G~~~W~~~~~~~~~--~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQ-GQLIWQQRISQPTG--ATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CEEEEEcCCCEEEEEEccC-ChhhheeccccCCC--ccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 3566777889998888877 55433322110 00 00000111122233 3456666777899999999988766554
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.63 E-value=0.28 Score=58.24 Aligned_cols=78 Identities=17% Similarity=0.295 Sum_probs=51.4
Q ss_pred CCeEEEEEccC--CCEEEEE---ecCCeE----EEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC
Q 001202 257 GDAVCASIAPE--QQILAVG---TRRGVV----ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1124)
Q Consensus 257 ~~~v~va~spd--g~lLAsG---s~DgtV----~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~ 327 (1124)
.+++++.||.. .....+. +.+|.+ .+|++.. .+ ++.......+ ....|.|++++|+...|+.|+.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r-~k-lqrvsvtsip----L~s~v~~ca~sp~E~kLvlGC~ 279 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSR-NK-LQRVSVTSIP----LPSQVICCARSPSEDKLVLGCE 279 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeec-Cc-eeEEEEEEEe----cCCcceEEecCcccceEEEEec
Confidence 45566666653 2222222 234433 4677654 33 3334433333 7788999999999999999999
Q ss_pred CCcEEEEEcCCCe
Q 001202 328 SRGLTVWSVSGCR 340 (1124)
Q Consensus 328 Dg~I~vWdv~~~~ 340 (1124)
||.|.+||...+.
T Consensus 280 DgSiiLyD~~~~~ 292 (545)
T PF11768_consen 280 DGSIILYDTTRGV 292 (545)
T ss_pred CCeEEEEEcCCCe
Confidence 9999999997663
No 336
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.45 E-value=0.21 Score=61.52 Aligned_cols=190 Identities=17% Similarity=0.108 Sum_probs=113.8
Q ss_pred CCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEecc
Q 001202 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 268 g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~ 347 (1124)
+..+..|+--..+..+|+.+ .+..++... ..+.|.-++ .+++.+.+|...|+|.+=|..+.+.++++..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~-~~e~r~~~v--------~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a 215 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNT-EKETRTTNV--------SASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDA 215 (1118)
T ss_pred Ccceeecchhhheeeeeccc-ceeeeeeec--------cCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeec
Confidence 34455565555666778876 554444432 123366555 4689999999999999999999999999998
Q ss_pred CCcCceeeeEEcCCCCCCcceEEEee------------eEEEEeCCCCeEEEEecCC-cceEEEEec--cceEEeeccCC
Q 001202 348 ISLSSISSPIVKPNQDCKYEPLMSGT------------SMMQWDEYGYRLYAIEEGS-SERVLIFSF--GKCCLNRGVSG 412 (1124)
Q Consensus 348 h~~~~V~s~~~sp~~~~~~~~l~sg~------------~i~~W~~~~~~l~~~~~~~-~~~v~~~s~--~k~~~s~s~d~ 412 (1124)
| .+.++.... .| +.+++++ -+++||....+.+.-..-+ ...++.|.| ...++-.+..|
T Consensus 216 H-s~siSDfDv--~G----NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sG 288 (1118)
T KOG1275|consen 216 H-SGSISDFDV--QG----NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSG 288 (1118)
T ss_pred c-ccceeeeec--cC----CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEeccc
Confidence 8 677766544 33 5566544 3456777665544332211 123455555 33444445555
Q ss_pred ceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCc-eEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecC
Q 001202 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP-VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD 490 (1124)
Q Consensus 413 ~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~-I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~ 490 (1124)
....-+...-.+. + .-..+...+++ +....+|++|..+|.|..+|.+ +|.-.. -..|.+
T Consensus 289 q~q~vd~~~lsNP---------~--------~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~--~P~Fn~ 349 (1118)
T KOG1275|consen 289 QFQFVDTATLSNP---------P--------AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP--QPQFNE 349 (1118)
T ss_pred ceeeccccccCCC---------c--------cceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCC--CCccCC
Confidence 5554441111110 0 00111222333 8889999999999999999999 997322 234544
Q ss_pred cCce
Q 001202 491 ITQE 494 (1124)
Q Consensus 491 ~~~e 494 (1124)
...+
T Consensus 350 ~s~~ 353 (1118)
T KOG1275|consen 350 YSRE 353 (1118)
T ss_pred Cccc
Confidence 4433
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.44 E-value=0.073 Score=64.44 Aligned_cols=105 Identities=20% Similarity=0.310 Sum_probs=77.0
Q ss_pred EEEEccCCCEEEEEe----cCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEc
Q 001202 261 CASIAPEQQILAVGT----RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1124)
Q Consensus 261 ~va~spdg~lLAsGs----~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv 336 (1124)
-.+|+|...++|+++ ..|.|-||- ++ |++-+... ..-.+++++|+|.--.||+||+-|.+-+|..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dt-GEPqr~Vt---------~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DT-GEPQRDVT---------YPVHATSLCWHPEEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cC-CCCCcccc---------cceehhhhccChHHHHHhhccccceeEEEec
Confidence 458899999988886 467888885 33 33222111 1112567999999999999999999999999
Q ss_pred CCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCC
Q 001202 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (1124)
Q Consensus 337 ~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~ 381 (1124)
.+.+ .++....+..++..+.|||+| ..++++. .+..|...
T Consensus 89 ~~~e-~htv~~th~a~i~~l~wS~~G----~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 89 NTTE-THTVVETHPAPIQGLDWSHDG----TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCce-eeeeccCCCCCceeEEecCCC----CeEEEcCCCceeEEEEee
Confidence 8765 444444338889999999999 7788765 67778654
No 338
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.36 E-value=0.41 Score=45.06 Aligned_cols=92 Identities=20% Similarity=0.304 Sum_probs=59.0
Q ss_pred cCC-cEEEEEecCCceEeeeccccceecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCC
Q 001202 228 SNG-QLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (1124)
Q Consensus 228 ~dG-~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~ 305 (1124)
.|| .-++++++|+.|++++......-..-.+.+ ++.-... ..+|.|.++|||-+|+-.. +..+ .+
T Consensus 12 ~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWR-iK--------- 78 (111)
T PF14783_consen 12 GDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWR-IK--------- 78 (111)
T ss_pred CCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeee-ec---------
Confidence 444 468888999999998765432112223444 6655555 6699999999999998532 2222 22
Q ss_pred CCCCeEEEEECC---CCC-EEEEEECCCcEE
Q 001202 306 DTGPVSCIAWTP---DNS-AFAVGWKSRGLT 332 (1124)
Q Consensus 306 h~g~V~~lawSP---DG~-~Lasgs~Dg~I~ 332 (1124)
.+..+.++++.. ||. -|++||.+|.|-
T Consensus 79 SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 79 SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 233366665543 443 799999999874
No 339
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.62 E-value=0.58 Score=55.61 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=40.7
Q ss_pred EEeeCCeEEEEEc---C--CcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEe-CCCeEEEEEeee
Q 001202 26 YFKVNNGLLLIAS---P--CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQI 98 (1124)
Q Consensus 26 ~fS~dg~llA~~~---~--~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t-~dg~l~i~~v~~ 98 (1124)
.++|+++.++-.. . ..+.+++.+....+ ..+...|.+..-.|||||++||.+. .+|...||-.+.
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~--------~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP--------VILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccc--------eeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 5788888665542 2 24888888632211 1122357777899999999887755 556666665443
No 340
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.62 E-value=18 Score=45.92 Aligned_cols=81 Identities=20% Similarity=0.073 Sum_probs=45.7
Q ss_pred hcceeEEEEecC--C----cEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEee
Q 001202 67 EGENLQAVWSPD--T----KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS 140 (1124)
Q Consensus 67 ~G~~~~v~wSPD--g----~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 140 (1124)
.+++.|+-++|- + +.+|+|..+..+.+--...+...++...-.. . .-....-.+++..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~-----~-----------~iPRSIl~~~~e~ 593 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSG-----E-----------IIPRSILLTTFEG 593 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCC-----C-----------ccchheeeEEeec
Confidence 467788888874 3 3688887776665543332221111100000 0 0001112345556
Q ss_pred cCCeEEEEecCCcEEEEeccCcc
Q 001202 141 DNKHMLLGLSDGSLYSISWKGEF 163 (1124)
Q Consensus 141 d~~~llv~t~dg~v~~~~Wd~~~ 163 (1124)
|+.++++++.||.+..+..+..+
T Consensus 594 d~~yLlvalgdG~l~~fv~d~~t 616 (1096)
T KOG1897|consen 594 DIHYLLVALGDGALLYFVLDINT 616 (1096)
T ss_pred cceEEEEEcCCceEEEEEEEccc
Confidence 68899999999999888777554
No 341
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=0.1 Score=65.26 Aligned_cols=75 Identities=23% Similarity=0.403 Sum_probs=59.0
Q ss_pred cCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEe
Q 001202 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (1124)
Q Consensus 266 pdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl 345 (1124)
-.+..+|.|+..|.|...|+.. . +..+.. + ..-.++|++++|+.||+.++.|-.+|.|.+||+..+...+.+
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~-n--L~~~~~---n--e~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTG-N--LGPLHQ---N--ERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI 168 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhc-c--cchhhc---C--CccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence 3466899999999999988764 1 111111 2 013689999999999999999999999999999999888877
Q ss_pred ccC
Q 001202 346 RQI 348 (1124)
Q Consensus 346 ~~h 348 (1124)
..|
T Consensus 169 ~e~ 171 (1206)
T KOG2079|consen 169 TEH 171 (1206)
T ss_pred eec
Confidence 766
No 342
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.44 E-value=4.4 Score=43.74 Aligned_cols=183 Identities=15% Similarity=0.090 Sum_probs=94.2
Q ss_pred CCcEEEEEecCCceEeeecccccee--cCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCC
Q 001202 229 NGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (1124)
Q Consensus 229 dG~~~~~~~~d~~i~~wd~~~~~~~--~gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h 306 (1124)
++..++++..++.+..+|..+++.. ....+.+.......+..+.+++.|+.+..+|..+ ++.+.+......+ -
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~t-G~~~W~~~~~~~~----~ 109 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKT-GKVLWSIYLTSSP----P 109 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTT-SCEEEEEEE-SSC----T
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCC-cceeeeecccccc----c
Confidence 3444444456677777776666532 1111221011123445566777889999999887 7666553211101 0
Q ss_pred CCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCc---e-------eeeEEcCCCCCCcceEEEee--e
Q 001202 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS---I-------SSPIVKPNQDCKYEPLMSGT--S 374 (1124)
Q Consensus 307 ~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~---V-------~s~~~sp~~~~~~~~l~sg~--~ 374 (1124)
.+.........+|..++++..++.+..+|..+|+.+.......... + ..+.+. ++ ..+++.. .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~v~~~~~~g~ 184 (238)
T PF13360_consen 110 AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG----RVYVSSGDGR 184 (238)
T ss_dssp CSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT----EEEEECCTSS
T ss_pred cccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC----EEEEEcCCCe
Confidence 1112223333448889999989999999999999887776531111 0 111111 11 3333322 2
Q ss_pred EEEEeCCCCeEEEEecCCcceEEE-Eec-cceEEeeccCCceeeeEeeecC
Q 001202 375 MMQWDEYGYRLYAIEEGSSERVLI-FSF-GKCCLNRGVSGMTYARQVIYGE 423 (1124)
Q Consensus 375 i~~W~~~~~~l~~~~~~~~~~v~~-~s~-~k~~~s~s~d~~v~~w~l~~~~ 423 (1124)
+..++..+++...... ...+.. ... +..+..++.++.+..+++.+++
T Consensus 185 ~~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 185 VVAVDLATGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEEEETTTTEEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred EEEEECCCCCEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 3444777776332222 122222 222 5555555567777777765544
No 343
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.84 Score=52.28 Aligned_cols=124 Identities=10% Similarity=0.042 Sum_probs=84.8
Q ss_pred EEEEecCC----cEEEEEecCCceEeeecccccee-----cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCC----
Q 001202 223 LFVLYSNG----QLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES---- 288 (1124)
Q Consensus 223 ~~~~s~dG----~~~~~~~~d~~i~~wd~~~~~~~-----~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~---- 288 (1124)
+-++..-| .+.+....++.+.+.|.....+- .-|..+| ++.++|-+.-+.+....|.|.-|.....
T Consensus 101 a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfP 180 (558)
T KOG0882|consen 101 AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFP 180 (558)
T ss_pred eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCc
Confidence 44455555 33444445666777765433221 3488899 9999999999999999999999998731
Q ss_pred -CceeEEEeec--cCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEecc
Q 001202 289 -ASLIRTVSLY--DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 289 -~~~~~~l~~~--~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~ 347 (1124)
+.....++.. -.++ +..++...++.|||+|..+++-+.|..|+++.+.++++++.+..
T Consensus 181 r~~l~~~~K~eTdLy~f-~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 181 RTNLNFELKHETDLYGF-PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred cccccccccccchhhcc-cccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 1111111100 0011 12455568999999999999999999999999999988877653
No 344
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.36 E-value=0.067 Score=38.15 Aligned_cols=34 Identities=41% Similarity=0.524 Sum_probs=29.7
Q ss_pred eeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEE
Q 001202 446 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (1124)
Q Consensus 446 ~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd 479 (1124)
..+..|..+|.+++++++++++++++.||.+ +|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3455678899999999999999999999999 885
No 345
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.36 E-value=0.016 Score=68.24 Aligned_cols=204 Identities=17% Similarity=0.230 Sum_probs=113.3
Q ss_pred CeE-EEEEccCC--CEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECC-CCCEEEEEEC----CC
Q 001202 258 DAV-CASIAPEQ--QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWK----SR 329 (1124)
Q Consensus 258 ~~v-~va~spdg--~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~----Dg 329 (1124)
..+ |++.+.+. ..+|+|..+|.|-+-.+...-.. .+.+.++|..+.++++|++ |...||+|-+ |.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds 129 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS 129 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-------cceecccccccccccccccccHHHHHhhhhhhcccC
Confidence 345 77776654 58999999999999887652111 1123345888999999998 6678888743 55
Q ss_pred cEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEeec
Q 001202 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRG 409 (1124)
Q Consensus 330 ~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s 409 (1124)
.+.|||..++.. .+-.++.|+. + ...|..+..|. . +.|.+.+|.
T Consensus 130 ~~~Iwdi~s~lt---------vPke~~~fs~-~------~l~gqns~cwl-r-------------------d~klvlaGm 173 (783)
T KOG1008|consen 130 SLKIWDINSLLT---------VPKESPLFSS-S------TLDGQNSVCWL-R-------------------DTKLVLAGM 173 (783)
T ss_pred CccceecccccC---------CCcccccccc-c------cccCccccccc-c-------------------Ccchhhccc
Confidence 799999987631 1111111111 0 01112334444 1 134445555
Q ss_pred cCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEcc-CCCEEEEEcCCCeE-EEEcCCCcEEE
Q 001202 410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQKKWRV 487 (1124)
Q Consensus 410 ~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~Sp-dG~~lAvag~dG~v-lwd~~sg~wk~ 487 (1124)
....+++.++.+...+. .. -...-++.+.++| .+.|+++-. ||.+ +||..-+--+.
T Consensus 174 ~sr~~~ifdlRqs~~~~------------------~s---vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienp 231 (783)
T KOG1008|consen 174 TSRSVHIFDLRQSLDSV------------------SS---VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENP 231 (783)
T ss_pred ccchhhhhhhhhhhhhh------------------hh---hhhhhcccceecCCCCCceeccc-cCceeeccchhhhccH
Confidence 56666666666543311 00 0111355688899 888998776 8888 99952211111
Q ss_pred ecC-cCceeee--EEEEEEecC--CEEEEEEEecCCCeEEEEEeeCC
Q 001202 488 FGD-ITQEQKI--QSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 488 f~~-~~~e~~~--~v~gl~W~~--~~liv~~~~~~~~~~elrly~~~ 529 (1124)
|.. ..+++.+ .+..++|.+ ..+++.+.. .+..||.|+..
T Consensus 232 l~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIrlydi~ 275 (783)
T KOG1008|consen 232 LQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIRLYDIC 275 (783)
T ss_pred HHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEEEeccc
Confidence 111 1122221 255677753 344443332 23478888884
No 346
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.31 E-value=11 Score=41.96 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=45.3
Q ss_pred cCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCe
Q 001202 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (1124)
Q Consensus 266 pdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~ 340 (1124)
..++.|++|+.+| +.+|++.......+.. +..+|..+...|+-+.|++-+ |+.+.++++..-.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~----------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~ 67 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL----------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLE 67 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe----------ecceEEEEEEecccCEEEEEc-CCccEEEEchhhc
Confidence 4578899999999 8999984423333333 234499999999877776665 4999999986543
No 347
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.24 E-value=8.7 Score=45.32 Aligned_cols=236 Identities=13% Similarity=0.106 Sum_probs=107.7
Q ss_pred eeEEEEecCCcEEEEEeCCCeEEEEEeeecCcee-ec--CC---------CCCCCcceeeE--------EEEeeeeeecc
Q 001202 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI-QI--GG---------KQPSGLFFIKI--------SLVLNEQLPFA 129 (1124)
Q Consensus 70 ~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~-~~--~~---------~~~~~~~~~~~--------~~~~~~~~~~~ 129 (1124)
++.+.|+++..=+|+++..|.|.||+........ .. +. ++.....+..+ .-.+.-...++
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 5689999999999999999999999987643211 00 00 00000001111 01111112344
Q ss_pred cccceEEEEeecC-CeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCC
Q 001202 130 EKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPIS 208 (1124)
Q Consensus 130 ~~~~~v~~i~~d~-~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~ 208 (1124)
...+.|+++...+ ..+.+|..+|.+.+++..+... -+. ..++. . .......
T Consensus 84 ~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPav-I~~--------~~i~~---~----------------~~~~~~~ 135 (395)
T PF08596_consen 84 AKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAV-IYN--------ENIRE---S----------------FLSKSSS 135 (395)
T ss_dssp --S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEE-EEE--------EEGGG---------------------T-SS--
T ss_pred ccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeE-Eee--------ccccc---c----------------ccccccc
Confidence 4577899988755 5677888999999987754321 111 00111 0 0011233
Q ss_pred ceEEEEEecC-----C---cceEEEEecCCcEEEEEec-----CCceEeeeccccceecCCCCeE-EE-EEccC------
Q 001202 209 SAIIWLELCL-----P---MRLLFVLYSNGQLMSCSVS-----KKGLKLAEFIKIDKELGSGDAV-CA-SIAPE------ 267 (1124)
Q Consensus 209 ~~I~~i~~s~-----~---~~~~~~~s~dG~~~~~~~~-----d~~i~~wd~~~~~~~~gh~~~v-~v-a~spd------ 267 (1124)
..+++++|+- + ...+++.+..|.+++.... ..++...+.. ..+.+.+ .+ .++.+
T Consensus 136 ~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-----~~~~~~i~~I~~i~~~~G~~a~ 210 (395)
T PF08596_consen 136 SYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-----TNHDSPILSIIPINADTGESAL 210 (395)
T ss_dssp --EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE-------SS----EEEEEETTT--B-B
T ss_pred cCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-----ccCCCceEEEEEEECCCCCccc
Confidence 4566666641 1 1234444455554443211 1111111111 1223333 22 23221
Q ss_pred -----------C---CEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEE-----CCCCCEEEEEECC
Q 001202 268 -----------Q---QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW-----TPDNSAFAVGWKS 328 (1124)
Q Consensus 268 -----------g---~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~law-----SPDG~~Lasgs~D 328 (1124)
+ .-+++.+.+..+|++...+ .+..++.. + ..-.+..+.+ ...+..|+.-..|
T Consensus 211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~-~k~~~K~~--~------~~~~~~~~~vv~~~~~~~~~~Lv~l~~~ 281 (395)
T PF08596_consen 211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK-SKGAHKSF--D------DPFLCSSASVVPTISRNGGYCLVCLFNN 281 (395)
T ss_dssp -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT----EEEEE---S------S-EEEEEEEEEEEE-EEEEEEEEEEETT
T ss_pred CchhHhhccccCCCcCcEEEEEcccceEEEeCCC-Ccccceee--c------cccccceEEEEeecccCCceEEEEEECC
Confidence 0 1234444577899998876 44443322 1 1112333444 2367889999999
Q ss_pred CcEEEEEcCCCeeeEEecc
Q 001202 329 RGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 329 g~I~vWdv~~~~l~~tl~~ 347 (1124)
|.++++++.+-+.+..+.-
T Consensus 282 G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 282 GSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp SEEEEEETTT--EEEEEE-
T ss_pred CcEEEEECCCchHhhcccC
Confidence 9999999998777665543
No 348
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=0.59 Score=58.89 Aligned_cols=72 Identities=21% Similarity=0.387 Sum_probs=52.4
Q ss_pred CCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEE
Q 001202 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1124)
Q Consensus 257 ~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWd 335 (1124)
..+| |++||.+|++++.|-.+|.|.+||+.. ++..+.+... | ..++| |..+.|..++..+.++..-|. +|+
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~--~--ap~t~-vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEH--G--APVTG-VIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccC-Ccceeeeeec--C--Cccce-EEEEEEeCCCcEEEEccCCCc--eEE
Confidence 4577 999999999999999999999999987 7766665522 1 11333 555667777777777665444 676
Q ss_pred c
Q 001202 336 V 336 (1124)
Q Consensus 336 v 336 (1124)
.
T Consensus 202 l 202 (1206)
T KOG2079|consen 202 L 202 (1206)
T ss_pred E
Confidence 5
No 349
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.13 E-value=5.4 Score=43.77 Aligned_cols=125 Identities=11% Similarity=0.130 Sum_probs=68.6
Q ss_pred CceEEEEEecCCcceEEEEecCCcEEEEEecCCce-EeeeccccceecCCCCeEEEEEccCCCEEEEEecCCeEEEEEcC
Q 001202 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL-KLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1124)
Q Consensus 208 ~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i-~~wd~~~~~~~~gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~ 286 (1124)
...+..++|+|+.+.+.++......++--..++.+ +... +.|..|.=.+++-.++.++++--.++++.+++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~------l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIP------LDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-------SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEe------CCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 34588888998766555554444433332333322 2111 1354555588888888777766669999999985
Q ss_pred CCCcee--EEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCC
Q 001202 287 ESASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (1124)
Q Consensus 287 ~~~~~~--~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~ 338 (1124)
..+..+ ........+....+...+-.++|.|.++.|.++-+..-.+++.+.+
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 533222 1112112233333556689999999999888888877778887765
No 350
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=94.08 E-value=1.1 Score=55.71 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=63.9
Q ss_pred CCceEeeecccccee---cCCCCeEEEEEccCC-CEEEEEecCCeEEEEEcCCCCce-eEEEeeccCCCCCCCCCCeEEE
Q 001202 239 KKGLKLAEFIKIDKE---LGSGDAVCASIAPEQ-QILAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDTGPVSCI 313 (1124)
Q Consensus 239 d~~i~~wd~~~~~~~---~gh~~~v~va~spdg-~lLAsGs~DgtV~vwd~~~~~~~-~~~l~~~~~g~~~~h~g~V~~l 313 (1124)
|.-+++||...-+.+ .-+-++.-+.|.|.- ..+|+.+..|...+-|..+.+.+ ....... . ....+..+
T Consensus 245 D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~--p----~~s~i~~f 318 (1118)
T KOG1275|consen 245 DPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVN--P----NGSGISAF 318 (1118)
T ss_pred cchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEc--c----CCCcceeE
Confidence 455788988765443 334455577888874 57899999999999884332222 1222211 1 23348999
Q ss_pred EECCCCCEEEEEECCCcEEEEEc
Q 001202 314 AWTPDNSAFAVGWKSRGLTVWSV 336 (1124)
Q Consensus 314 awSPDG~~Lasgs~Dg~I~vWdv 336 (1124)
.+|++|..+|.|..+|.|-+|.-
T Consensus 319 DiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 319 DISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EecCCCceEEEecccCcEeeecC
Confidence 99999999999999999999984
No 351
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.78 E-value=6.8 Score=42.86 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=45.3
Q ss_pred CCceEEEEEccCCCEEEEEcCCCeE--EEEcCCCcEEEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeCC
Q 001202 452 NWPVQHVAASKDGMFLAVAGLHGLI--LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 452 ~~~I~~va~SpdG~~lAvag~dG~v--lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~~ 529 (1124)
+.-|-+++.+.+-..++..+..|.. +||..||....-... ..+.|+.-.++..++. +...++++|++.
T Consensus 279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l-----~daaGva~~~~gf~vs-----sg~G~~~~~s~~ 348 (366)
T COG3490 279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL-----PDAAGVAAAKGGFAVS-----SGQGRIIFYSRA 348 (366)
T ss_pred HhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc-----cccccceeccCceEEe-----cCCceEEecccc
Confidence 3446778999888889988888876 999999975432110 1244666555555554 344578888774
No 352
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.69 E-value=0.87 Score=54.11 Aligned_cols=93 Identities=14% Similarity=0.206 Sum_probs=52.4
Q ss_pred EecCCcEEEEEecC-CceEeee--ccc--cceecCCCCeE-EEEEccCCCEEEEEecC-Ce--EEEEEcCCCCceeEEEe
Q 001202 226 LYSNGQLMSCSVSK-KGLKLAE--FIK--IDKELGSGDAV-CASIAPEQQILAVGTRR-GV--VELYDLAESASLIRTVS 296 (1124)
Q Consensus 226 ~s~dG~~~~~~~~d-~~i~~wd--~~~--~~~~~gh~~~v-~va~spdg~lLAsGs~D-gt--V~vwd~~~~~~~~~~l~ 296 (1124)
++|||+.++..++. +..++|- ... ..+.......- +-.+||||++||..+.+ |. |.+.++.+ +..++.+.
T Consensus 289 ~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~-~~~~~~lt 367 (425)
T COG0823 289 WSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS-GGKIRILT 367 (425)
T ss_pred CCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCC-CCcEEEcc
Confidence 34777777766543 3334432 221 11222222222 67899999999987753 44 55666655 32244444
Q ss_pred eccCCCCCCCCCCeEEEEECCCCCEEEEEECC
Q 001202 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (1124)
Q Consensus 297 ~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D 328 (1124)
++.....-+|.|+|+.+...+.-
T Consensus 368 ---------~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 368 ---------STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ---------ccccCCCCCcCCCCceEEEeccC
Confidence 33334556889999987766543
No 353
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.56 E-value=2.6 Score=51.47 Aligned_cols=105 Identities=10% Similarity=0.018 Sum_probs=67.1
Q ss_pred eEEEEecCCcEEEEEe-cCCceEeeecccccee----------------cCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 001202 222 LLFVLYSNGQLMSCSV-SKKGLKLAEFIKIDKE----------------LGSGDAVCASIAPEQQILAVGTRRGVVELYD 284 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~-~d~~i~~wd~~~~~~~----------------~gh~~~v~va~spdg~lLAsGs~DgtV~vwd 284 (1124)
.-+.++|||++++++. .+.++.+.|..+.+.+ .| ..+...+|.++|....+-.-|..|-.|+
T Consensus 324 HGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 324 HGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred cceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEEe
Confidence 4567789999887766 4677777776654321 12 2445789999999888999999999999
Q ss_pred cCCC-----Cc-eeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC
Q 001202 285 LAES-----AS-LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1124)
Q Consensus 285 ~~~~-----~~-~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~ 327 (1124)
+++. +. ....+...+-++.++|......=.-.|||++|++...
T Consensus 403 ~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 403 IEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred hHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 8751 11 1112222222444556443333345789999988653
No 354
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.29 E-value=0.22 Score=39.45 Aligned_cols=34 Identities=26% Similarity=0.547 Sum_probs=30.0
Q ss_pred CCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCe
Q 001202 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (1124)
Q Consensus 307 ~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~ 340 (1124)
...|.+++|+|....||.|..||.|.|+.+.+.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 4569999999999999999999999999995543
No 355
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=93.25 E-value=2.7 Score=49.53 Aligned_cols=67 Identities=21% Similarity=0.187 Sum_probs=39.4
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001202 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1124)
Q Consensus 267 dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~ 339 (1124)
.+..|++=..||.|++|.+.. -+.+..+++.... +...+...+++++|..+.-.+. ..+.++++.+.
T Consensus 271 ~~~~Lv~l~~~G~i~i~SLP~-Lkei~~~~l~~~~----d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv~~~ 337 (395)
T PF08596_consen 271 GGYCLVCLFNNGSIRIYSLPS-LKEIKSVSLPPPL----DSRRLSSSSISRNGDIFYWTGP-SEIQLFSVWGE 337 (395)
T ss_dssp EEEEEEEEETTSEEEEEETTT---EEEEEE-SS-------HHHHTT-EE-TTS-EEEE-SS-SEEEEEEEES-
T ss_pred CceEEEEEECCCcEEEEECCC-chHhhcccCCCcc----ccccccccEECCCCCEEEEeCc-ccEEEEEEEcc
Confidence 566788888999999999987 6666666543211 3334556778999997766655 36666666543
No 356
>PRK02888 nitrous-oxide reductase; Validated
Probab=92.44 E-value=3.2 Score=50.79 Aligned_cols=98 Identities=9% Similarity=-0.018 Sum_probs=56.3
Q ss_pred CCCCCEEEEEECCCcEEEEEcCC-----CeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee----eEEEEeCCCCeE-
Q 001202 316 TPDNSAFAVGWKSRGLTVWSVSG-----CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRL- 385 (1124)
Q Consensus 316 SPDG~~Lasgs~Dg~I~vWdv~~-----~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~----~i~~W~~~~~~l- 385 (1124)
.+||++...+ ++.|.|.|..+ ...+..+.- ......+.++||+ +++.... ++-+.+....+-
T Consensus 285 vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSPDG----kylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 285 VKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSPDG----KYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred hhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC--CCCccceEECCCC----CEEEEeCCCCCcEEEEEChhhhhh
Confidence 4578876663 56899999987 455666554 2356678899999 5554332 555666655331
Q ss_pred -----------EEEecCCcceE-EEEec-cceEEeeccCCceeeeEeee
Q 001202 386 -----------YAIEEGSSERV-LIFSF-GKCCLNRGVSGMTYARQVIY 421 (1124)
Q Consensus 386 -----------~~~~~~~~~~v-~~~s~-~k~~~s~s~d~~v~~w~l~~ 421 (1124)
.....-..+.+ .+|+. +....|--.|..+-.|++..
T Consensus 357 ~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 357 FDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 11111112222 44444 45555666666777777543
No 357
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.12 E-value=5.7 Score=49.36 Aligned_cols=108 Identities=13% Similarity=0.009 Sum_probs=58.8
Q ss_pred eEEEEecCCcEEEEEe------cCCceEeeecccc---cee-cCCCCeEEEEEccCCCEEEEEecC-CeEEEEEcCCCCc
Q 001202 222 LLFVLYSNGQLMSCSV------SKKGLKLAEFIKI---DKE-LGSGDAVCASIAPEQQILAVGTRR-GVVELYDLAESAS 290 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~------~d~~i~~wd~~~~---~~~-~gh~~~v~va~spdg~lLAsGs~D-gtV~vwd~~~~~~ 290 (1124)
...++++||+.++... ++..-.+|-...+ ..+ .+. .-.+-+|+|||+.|++.+.. ..+++.+-.. ..
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~-~g 430 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA-TG 430 (591)
T ss_pred ccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC-CCCCceECCCCCceEEEecCcceEEEeccCC-Cc
Confidence 3566788888777655 2444455543211 111 222 22277999999988887643 2233333222 22
Q ss_pred eeEEEeeccCCCCC-CCCCCeEEEEECCCCCEEEEEECCCcEEE
Q 001202 291 LIRTVSLYDWGYSM-DDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (1124)
Q Consensus 291 ~~~~l~~~~~g~~~-~h~g~V~~lawSPDG~~Lasgs~Dg~I~v 333 (1124)
.+..+.+.. +... ...+.|..++|||||.++|.-.. |.|.|
T Consensus 431 ql~~~~vd~-ge~~~~~~g~Issl~wSpDG~RiA~i~~-g~v~V 472 (591)
T PRK13616 431 QLARTPVDA-SAVASRVPGPISELQLSRDGVRAAMIIG-GKVYL 472 (591)
T ss_pred eEEEEeccC-chhhhccCCCcCeEEECCCCCEEEEEEC-CEEEE
Confidence 222222110 1000 13567999999999999887663 54544
No 358
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.05 E-value=6.1 Score=49.06 Aligned_cols=67 Identities=19% Similarity=0.361 Sum_probs=48.0
Q ss_pred ccCCCEEEEEcCCCe-----E-EEEcCCCcEEEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeC
Q 001202 461 SKDGMFLAVAGLHGL-----I-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 461 SpdG~~lAvag~dG~-----v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~ 528 (1124)
.-+|+..|+||.||. + .||..+.+|.........+ ..+....+.+...+++++........+.+|+.
T Consensus 473 ~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r-s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 473 VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR-SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDP 545 (571)
T ss_pred EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc-ccccEEEECCEEEEEecccCccccceeEEcCC
Confidence 348999999998873 6 8999999999876544443 22334556666777787766666667888866
No 359
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.93 E-value=0.41 Score=37.91 Aligned_cols=29 Identities=38% Similarity=0.686 Sum_probs=26.6
Q ss_pred CeE-EEEEccCCCEEEEEecCCeEEEEEcC
Q 001202 258 DAV-CASIAPEQQILAVGTRRGVVELYDLA 286 (1124)
Q Consensus 258 ~~v-~va~spdg~lLAsGs~DgtV~vwd~~ 286 (1124)
..| +++|+|+..+||.|+.||.|.+|.++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 446 99999999999999999999999984
No 360
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=91.61 E-value=6.5 Score=37.20 Aligned_cols=61 Identities=13% Similarity=0.231 Sum_probs=46.0
Q ss_pred EEccCC-CEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEc
Q 001202 263 SIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1124)
Q Consensus 263 a~spdg-~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv 336 (1124)
.|.-|| .-|.+||.|..||+|+-+ ..+..+. -++.|.+++-... ..++-|-++|+|.+|+-
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~---------e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGD---EIVAEIT---------ETDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCC---cEEEEEe---------cccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 444454 459999999999999853 4455555 4667888887766 56899999999999875
No 361
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.23 E-value=18 Score=43.68 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=41.1
Q ss_pred EEEEccCCCEEEEEecCC-eEEEEEcCCCC-ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC
Q 001202 261 CASIAPEQQILAVGTRRG-VVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~Dg-tV~vwd~~~~~-~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~ 327 (1124)
-+||+|+.+.+|+++.-. .|.||.+.... ..++.+.+. ....-..++|--|.-.|+.-+.
T Consensus 343 liAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe-------~~ERPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 343 LIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLE-------SNERPKGICFLTDKLLLILVGK 404 (671)
T ss_pred eeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcc-------cCCCCceeeEccCCeEEEEecc
Confidence 579999999999998754 77899986521 335555542 2334466888878776665543
No 362
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.84 E-value=27 Score=37.85 Aligned_cols=83 Identities=12% Similarity=0.128 Sum_probs=58.0
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEE-EEECCCCCEEEEEECCCcEEEEEcCCCeeeEEe
Q 001202 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC-IAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (1124)
Q Consensus 267 dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~-lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl 345 (1124)
-|.+++.|+..|.+.+-++++ ++....+.. .+.|.+ -...+||..+-.|+.|++...-|..+..++...
T Consensus 62 vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~---------~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVI---------LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred ECCEEEEEEccCcEEEEEecc-hhheeeeee---------hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 466799999999999999988 654444431 222322 234679999999999999999999988887776
Q ss_pred ccCCcCceeeeEEcC
Q 001202 346 RQISLSSISSPIVKP 360 (1124)
Q Consensus 346 ~~h~~~~V~s~~~sp 360 (1124)
+-.+ ....+++..|
T Consensus 132 kcgG-~~f~sP~i~~ 145 (354)
T KOG4649|consen 132 KCGG-GTFVSPVIAP 145 (354)
T ss_pred ccCC-ceeccceecC
Confidence 5432 2233444444
No 363
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.82 E-value=29 Score=38.32 Aligned_cols=95 Identities=20% Similarity=0.294 Sum_probs=55.6
Q ss_pred CeEEEEEccCCCEEEEEe-cCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEE-
Q 001202 258 DAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS- 335 (1124)
Q Consensus 258 ~~v~va~spdg~lLAsGs-~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWd- 335 (1124)
+....++|++++.+|.-. .++.-.||-....+.....+. + ..+..-+|+++|...++...+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~----g------~~l~~PS~d~~g~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT----G------GSLTRPSWDPDGWVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc----C------CccccccccCCCCEEEEEcCCCceEEEEe
Confidence 344899999999887655 333444554444222222222 2 2567779999999888888777878774
Q ss_pred cCCC-eeeEEeccCCcC-ceeeeEEcCCC
Q 001202 336 VSGC-RLMSTIRQISLS-SISSPIVKPNQ 362 (1124)
Q Consensus 336 v~~~-~l~~tl~~h~~~-~V~s~~~sp~~ 362 (1124)
...+ .....+...... .|+++.+|||+
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~~l~vSpDG 123 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRITALRVSPDG 123 (253)
T ss_pred cCCCcceeEEecccccCCceEEEEECCCC
Confidence 2222 211222221112 67777777776
No 364
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.82 E-value=37 Score=37.75 Aligned_cols=176 Identities=15% Similarity=0.225 Sum_probs=103.1
Q ss_pred CCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccceecCCCCeEEEEEccCCCEEEEEecCCeEEEEEc
Q 001202 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDL 285 (1124)
Q Consensus 206 ~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v~va~spdg~lLAsGs~DgtV~vwd~ 285 (1124)
+....+.+++|+|+.+...++...+..++--...+.+- ..-.+.|-.++-.+.+--+++++++--.++++.++.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdli-----rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLI-----RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceE-----EEecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence 34445788889877766666655555544333222211 0001245556667888889999998889999999998
Q ss_pred CCCCceeE----EEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCC
Q 001202 286 AESASLIR----TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (1124)
Q Consensus 286 ~~~~~~~~----~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~ 361 (1124)
+..+..+. .+++ |.......+--.++|.|.+..|..+=+-.-+.|+.+.+.. ..+..| +...|.
T Consensus 158 d~~t~~~~~~~~~i~L---~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~--~~l~~~-------~~~~~~ 225 (316)
T COG3204 158 DADTTVISAKVQKIPL---GTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP--SSLSVH-------ASLDPT 225 (316)
T ss_pred cCCccEEeccceEEec---cccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC--cccccc-------cccCcc
Confidence 87433322 2222 2111224456789999999999999998888888887432 111111 000111
Q ss_pred CCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEec
Q 001202 362 QDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF 401 (1124)
Q Consensus 362 ~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~ 401 (1124)
. ..+..+...+...++..++.+++.... +..++.++.
T Consensus 226 ~--~~~~f~~DvSgl~~~~~~~~LLVLS~E-Sr~l~Evd~ 262 (316)
T COG3204 226 A--DRDLFVLDVSGLEFNAITNSLLVLSDE-SRRLLEVDL 262 (316)
T ss_pred c--ccceEeeccccceecCCCCcEEEEecC-CceEEEEec
Confidence 1 113444445667788888877766533 334444443
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=89.70 E-value=49 Score=38.96 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=73.7
Q ss_pred EEEEccCCC-EEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC---CCcEEEEEc
Q 001202 261 CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK---SRGLTVWSV 336 (1124)
Q Consensus 261 ~va~spdg~-lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~---Dg~I~vWdv 336 (1124)
++++++.+. ..++...+..|.+.|... ....+.... | . .-..++++|+|..+.++.. ++++.+-|.
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~-~~~~~~~~v---G----~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~ 147 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTAT-NTVLGSIPV---G----L--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDA 147 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcc-cceeeEeee---c----c--CCceEEECCCCCEEEEEecccCCceEEEEeC
Confidence 788899887 455555568999999766 454554442 2 1 3467999999987766655 689999999
Q ss_pred CCCeeeEEeccCCcCceeeeEEcCCCCCCcceE-EEe---eeEEEEeCCCCeEE
Q 001202 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSG---TSMMQWDEYGYRLY 386 (1124)
Q Consensus 337 ~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l-~sg---~~i~~W~~~~~~l~ 386 (1124)
.+.....+.... ..+ ..+++.|++ +.+ +.- ..+...+..+..++
T Consensus 148 ~t~~~~~~~~vG-~~P-~~~a~~p~g----~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 148 ATNKVTATIPVG-NTP-TGVAVDPDG----NKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCCeEEEEEecC-CCc-ceEEECCCC----CeEEEEecCCCeEEEEeCCCccee
Confidence 998888775543 233 778888887 322 211 15555666555555
No 366
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.54 E-value=12 Score=47.60 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=50.7
Q ss_pred EEEeeCCeEEEEEcCCcEEEEecCCCce----------eE-EEEeeChHHH---hhhcceeEEEEecCC---cEEEEEeC
Q 001202 25 IYFKVNNGLLLIASPCHIELWSSSQHKV----------RL-GKYKRDSESV---QREGENLQAVWSPDT---KLIAVVTS 87 (1124)
Q Consensus 25 v~fS~dg~llA~~~~~~l~IW~~~~~~~----------~l-~~~~r~~~sl---~~~G~~~~v~wSPDg---~~Lav~t~ 87 (1124)
|.+||+|+++|.+|..+|.|-...+... .+ +....-...+ .....+..+.|-|.| ..|++-|+
T Consensus 90 i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLts 169 (717)
T PF10168_consen 90 ISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTS 169 (717)
T ss_pred EEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEec
Confidence 6689999999999998888776632111 11 1111111111 112356789998874 89999999
Q ss_pred CCeEEEEEeeecC
Q 001202 88 SLYLHIFKVQITE 100 (1124)
Q Consensus 88 dg~l~i~~v~~~~ 100 (1124)
|+++|+||+....
T Consensus 170 dn~lR~y~~~~~~ 182 (717)
T PF10168_consen 170 DNTLRLYDISDPQ 182 (717)
T ss_pred CCEEEEEecCCCC
Confidence 9999999996433
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.53 E-value=52 Score=39.03 Aligned_cols=206 Identities=16% Similarity=0.224 Sum_probs=96.1
Q ss_pred eEEEEECCCCCEEEEEE-CCC----cEEEEEcCCCeeeEE-eccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCC
Q 001202 310 VSCIAWTPDNSAFAVGW-KSR----GLTVWSVSGCRLMST-IRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGY 383 (1124)
Q Consensus 310 V~~lawSPDG~~Lasgs-~Dg----~I~vWdv~~~~l~~t-l~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~ 383 (1124)
+...++||||+++|-+- ..| .+++.|+.+++.+.. +.+ .. .+.+.|..++.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~----------------------~~-~~~~~W~~d~~ 182 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN----------------------PK-FSSVSWSDDGK 182 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE----------------------EE-SEEEEECTTSS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc----------------------cc-cceEEEeCCCC
Confidence 44678999999888653 333 599999998865421 111 00 12266776665
Q ss_pred eEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCe-EEEeecCCCccceeeecccceeeccCCCc--eEEEEE
Q 001202 384 RLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDR-LLVVQSEDTDELKILHLNLPVSYISQNWP--VQHVAA 460 (1124)
Q Consensus 384 ~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~-l~l~~~~~~~~~~w~~~~~p~~~~~~~~~--I~~va~ 460 (1124)
.++.+..+...+.- ..+....+..|.+.++... .++++. ...+ ...+..
T Consensus 183 ~~~y~~~~~~~~~~---------~~~~~~~v~~~~~gt~~~~d~lvfe~-------------------~~~~~~~~~~~~ 234 (414)
T PF02897_consen 183 GFFYTRFDEDQRTS---------DSGYPRQVYRHKLGTPQSEDELVFEE-------------------PDEPFWFVSVSR 234 (414)
T ss_dssp EEEEEECSTTTSS----------CCGCCEEEEEEETTS-GGG-EEEEC--------------------TTCTTSEEEEEE
T ss_pred EEEEEEeCcccccc---------cCCCCcEEEEEECCCChHhCeeEEee-------------------cCCCcEEEEEEe
Confidence 55555433211100 1111223334443332221 122221 1112 456888
Q ss_pred ccCCCEEEEEcCCC----eE-EEEcCCC-----cEEEecCcCceeeeEEEEEEecCCE-EEEEEEecCCCeEEEEEeeCC
Q 001202 461 SKDGMFLAVAGLHG----LI-LYDIRQK-----KWRVFGDITQEQKIQSKGLLWLGKI-IVVCNYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 461 SpdG~~lAvag~dG----~v-lwd~~sg-----~wk~f~~~~~e~~~~v~gl~W~~~~-liv~~~~~~~~~~elrly~~~ 529 (1124)
|+||+++++....+ .+ +.+...+ .|+.+....... ...+.+.++. .+..+ .....+.|--.+..
T Consensus 235 s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~---~~~v~~~~~~~yi~Tn--~~a~~~~l~~~~l~ 309 (414)
T PF02897_consen 235 SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV---EYYVDHHGDRLYILTN--DDAPNGRLVAVDLA 309 (414)
T ss_dssp -TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS----EEEEEEETTEEEEEE---TT-TT-EEEEEETT
T ss_pred cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce---EEEEEccCCEEEEeeC--CCCCCcEEEEeccc
Confidence 99999988643332 24 6666654 677664322221 1223333554 44442 32333455555554
Q ss_pred CCCCcceEEEeecCC----ccEEEEeeCCEEEE-EEcCCeEEEEEEEE
Q 001202 530 HLDQSSLLCRKSLLA----KPIVMDVYEDYILV-TYRPFDVHIFHVKL 572 (1124)
Q Consensus 530 ~ld~~~~l~~~~l~s----~~l~l~~~~~~llv-~~~d~~i~l~~~~~ 572 (1124)
......-. ..-++. ....+..++++|++ ...++.-+|.-+..
T Consensus 310 ~~~~~~~~-~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 310 DPSPAEWW-TVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp STSGGGEE-EEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred ccccccce-eEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEEC
Confidence 32211111 011121 23345667888777 45566555555543
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=88.55 E-value=26 Score=43.70 Aligned_cols=91 Identities=15% Similarity=0.150 Sum_probs=53.3
Q ss_pred CeE-EEEEccCCCEEEEEe------cCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC-C
Q 001202 258 DAV-CASIAPEQQILAVGT------RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-R 329 (1124)
Q Consensus 258 ~~v-~va~spdg~lLAsGs------~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D-g 329 (1124)
..+ ..++||+|+.+|.-- .|+.-.||-....+.. ..+. . | . ....-+|||||..|++.... .
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt--~-g----~--~~t~PsWspDG~~lw~v~dg~~ 419 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVL--E-G----H--SLTRPSWSLDADAVWVVVDGNT 419 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeee--c-C----C--CCCCceECCCCCceEEEecCcc
Confidence 345 889999999988765 3555556654432332 2222 0 2 1 26778999999988877533 1
Q ss_pred cEEEE-----------EcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 330 GLTVW-----------SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 330 ~I~vW-----------dv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
.+++. ++.++.....+ ...|.++.|||||
T Consensus 420 ~~~v~~~~~~gql~~~~vd~ge~~~~~----~g~Issl~wSpDG 459 (591)
T PRK13616 420 VVRVIRDPATGQLARTPVDASAVASRV----PGPISELQLSRDG 459 (591)
T ss_pred eEEEeccCCCceEEEEeccCchhhhcc----CCCcCeEEECCCC
Confidence 22222 34333322211 3468889999998
No 369
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=87.02 E-value=1e+02 Score=39.59 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=52.0
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCe
Q 001202 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~ 340 (1124)
-..|--|..+|.++..||.+..|.++.........+....| +.|+.-=.|+..++.-+-+..|+-.-+|+-++..
T Consensus 588 ~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lG-----t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kL 662 (1096)
T KOG1897|consen 588 LTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLG-----TQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKL 662 (1096)
T ss_pred eEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccC-----CCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcE
Confidence 44555567899999999999988887633333222222234 5677777887766544444556788888888776
Q ss_pred eeEEe
Q 001202 341 LMSTI 345 (1124)
Q Consensus 341 l~~tl 345 (1124)
+...+
T Consensus 663 v~spl 667 (1096)
T KOG1897|consen 663 VYSPL 667 (1096)
T ss_pred EEecc
Confidence 55444
No 370
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=85.68 E-value=57 Score=42.11 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=48.1
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCCCceeE-----------EEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCC
Q 001202 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIR-----------TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~-----------~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg 329 (1124)
++....-+..++....||+|.++|-.+ -+.+. ..++.+.|+...+-.++..++|||.+..++.-..||
T Consensus 264 si~~~~~~~~v~~~~~DGsI~~~dr~t-~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~ 342 (753)
T PF11635_consen 264 SITSPELDIVVAFAFSDGSIEFRDRNT-MKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDG 342 (753)
T ss_pred EEEecccCcEEEEEEcCCeEEEEecCc-chhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEecCC
Confidence 666666677899999999999998655 21111 112222333322334566799999999999999888
Q ss_pred cEE
Q 001202 330 GLT 332 (1124)
Q Consensus 330 ~I~ 332 (1124)
.+.
T Consensus 343 ~~~ 345 (753)
T PF11635_consen 343 KTK 345 (753)
T ss_pred Cce
Confidence 776
No 371
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.62 E-value=2.8 Score=43.43 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=25.8
Q ss_pred ceeEEEEecCC------cEEEEEeCCCeEEEEEeee
Q 001202 69 ENLQAVWSPDT------KLIAVVTSSLYLHIFKVQI 98 (1124)
Q Consensus 69 ~~~~v~wSPDg------~~Lav~t~dg~l~i~~v~~ 98 (1124)
.+++++|||-| -.||+.|++|.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 67899999966 4799999999999998653
No 372
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=84.56 E-value=94 Score=36.81 Aligned_cols=57 Identities=19% Similarity=0.404 Sum_probs=38.9
Q ss_pred EEEEccCCCEEEEE-ecCC----eEEEEEcCCCCceeE-EEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC
Q 001202 261 CASIAPEQQILAVG-TRRG----VVELYDLAESASLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (1124)
Q Consensus 261 ~va~spdg~lLAsG-s~Dg----tV~vwd~~~~~~~~~-~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D 328 (1124)
..++||+|+++|.+ +..| +++++|+.+ ++.+. .+.. .. -..+.|++||+.|+-...|
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i~~---------~~-~~~~~W~~d~~~~~y~~~~ 190 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGIEN---------PK-FSSVSWSDDGKGFFYTRFD 190 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEEEE---------EE-SEEEEECTTSSEEEEEECS
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCcccc---------cc-cceEEEeCCCCEEEEEEeC
Confidence 57899999999976 3344 499999988 65443 2221 11 1239999999987666544
No 373
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=83.64 E-value=87 Score=35.71 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=36.9
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCC------Cc-eeEEEeeccCCCCCCCCCCeEEE---EECCC--CC------EE
Q 001202 261 CASIAPEQQILAVGTRRGVVELYDLAES------AS-LIRTVSLYDWGYSMDDTGPVSCI---AWTPD--NS------AF 322 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~DgtV~vwd~~~~------~~-~~~~l~~~~~g~~~~h~g~V~~l---awSPD--G~------~L 322 (1124)
++.+-+++..++++..+|.+.++..+.. +. .+....... ....|+++ +..|. +. .+
T Consensus 177 ~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~------lg~~v~~~~~~~l~~~~~~~~~~~~~~i 250 (321)
T PF03178_consen 177 AAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH------LGDIVNSFRRGSLIPRSGSSESPNRPQI 250 (321)
T ss_dssp EEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-------SS-EEEEEE--SS--SSSS-TTEEEEE
T ss_pred EEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE------CCCccceEEEEEeeecCCCCcccccceE
Confidence 7777656679999999999999988631 11 222222111 22346766 55552 22 37
Q ss_pred EEEECCCcEEE
Q 001202 323 AVGWKSRGLTV 333 (1124)
Q Consensus 323 asgs~Dg~I~v 333 (1124)
+-++.+|+|-+
T Consensus 251 ~~~T~~G~Ig~ 261 (321)
T PF03178_consen 251 LYGTVDGSIGV 261 (321)
T ss_dssp EEEETTS-EEE
T ss_pred EEEecCCEEEE
Confidence 77778888763
No 374
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=83.20 E-value=18 Score=46.03 Aligned_cols=121 Identities=17% Similarity=0.150 Sum_probs=74.1
Q ss_pred CceEeeeccccce---ecCCCCeEEEEEccC-------CCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCC
Q 001202 240 KGLKLAEFIKIDK---ELGSGDAVCASIAPE-------QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP 309 (1124)
Q Consensus 240 ~~i~~wd~~~~~~---~~gh~~~v~va~spd-------g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~ 309 (1124)
..+...|+..++. |.-|.+..-..+.|+ ......|-.+..+..||..-.+..+..-..+ .| .....
T Consensus 504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k--~Y--~~~~~ 579 (794)
T PF08553_consen 504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK--QY--SSKNN 579 (794)
T ss_pred CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc--cc--ccCCC
Confidence 3444455555543 333333312334443 2345567778888889987633211111111 11 13344
Q ss_pred eEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEE
Q 001202 310 VSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM 370 (1124)
Q Consensus 310 V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~ 370 (1124)
-.|++=+.+| +||+|+.+|.||+||-.|.+....|.+- ..+|..+..+.|| +.++
T Consensus 580 Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~l-G~pI~~iDvt~DG----kwil 634 (794)
T PF08553_consen 580 FSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGL-GDPIIGIDVTADG----KWIL 634 (794)
T ss_pred ceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCC-CCCeeEEEecCCC----cEEE
Confidence 6778777776 7999999999999998776655566665 4789999999998 6554
No 375
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=82.82 E-value=88 Score=38.07 Aligned_cols=113 Identities=14% Similarity=0.261 Sum_probs=72.3
Q ss_pred EEEeeCC-----eEEEEEcCCcEEEEecCCCcee-----EEEEeeChHHHhhhcce--eEEEEecCCcEEEEEeCCCeEE
Q 001202 25 IYFKVNN-----GLLLIASPCHIELWSSSQHKVR-----LGKYKRDSESVQREGEN--LQAVWSPDTKLIAVVTSSLYLH 92 (1124)
Q Consensus 25 v~fS~dg-----~llA~~~~~~l~IW~~~~~~~~-----l~~~~r~~~sl~~~G~~--~~v~wSPDg~~Lav~t~dg~l~ 92 (1124)
+++.|-+ .|||+-....|.||..- +... +.+.... +.+--++ ..+.|-|-...|+|-|....=.
T Consensus 62 lsW~P~~~~~~paLLAVQHkkhVtVWqL~-~s~~e~~K~l~sQtcE---i~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV 137 (671)
T PF15390_consen 62 LSWAPPCTADTPALLAVQHKKHVTVWQLC-PSTTERNKLLMSQTCE---IREPFPVLPQGCVWHPKKAILTVLTARDVSV 137 (671)
T ss_pred eeecCcccCCCCceEEEeccceEEEEEec-cCccccccceeeeeee---ccCCcccCCCcccccCCCceEEEEecCceeE
Confidence 5666652 48998888999999984 4321 1111100 1111111 3578999999999999998878
Q ss_pred EEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccc-cceEEEEeecCCeEEEEecCCcEEEEeccCcc
Q 001202 93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEK-GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEF 163 (1124)
Q Consensus 93 i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~ 163 (1124)
++++..+..++ +..+++. -....|+..||.+++++-++ .++.|.||...
T Consensus 138 ~~sV~~d~srV---------------------kaDi~~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~q 187 (671)
T PF15390_consen 138 LPSVHCDSSRV---------------------KADIKTSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSAQ 187 (671)
T ss_pred eeeeeeCCceE---------------------EEeccCCceEEEEEecCcCCEEEEEeCC-eEEEEEecCch
Confidence 88988654321 1112111 12345688899999998876 78888899754
No 376
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=82.63 E-value=7.6 Score=49.31 Aligned_cols=93 Identities=22% Similarity=0.224 Sum_probs=60.5
Q ss_pred EEEEEecCCceEeeeccccc-ee---cC----CCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEE-EeeccCC
Q 001202 232 LMSCSVSKKGLKLAEFIKID-KE---LG----SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRT-VSLYDWG 301 (1124)
Q Consensus 232 ~~~~~~~d~~i~~wd~~~~~-~~---~g----h~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~-l~~~~~g 301 (1124)
-.++|.++..+-.||..-.. +. .. ...-. |++-+.+| .||+|+.+|.||+||-- +..-++ +. |
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~--g~~AKT~lp----~ 616 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL--GKRAKTALP----G 616 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc--chhhhhcCC----C
Confidence 34667777777778765421 11 11 11223 77777666 69999999999999832 321111 21 2
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEc
Q 001202 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1124)
Q Consensus 302 ~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv 336 (1124)
-..||..|..|.||+++++.+. ..+-+.++
T Consensus 617 ----lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 617 ----LGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred ----CCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 3578999999999998776665 46666665
No 377
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=82.29 E-value=4.5 Score=42.98 Aligned_cols=100 Identities=10% Similarity=0.178 Sum_probs=56.8
Q ss_pred CcEEEEEecCCceEeeecccc----ceecCCCCeE-EE-EEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCC
Q 001202 230 GQLMSCSVSKKGLKLAEFIKI----DKELGSGDAV-CA-SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (1124)
Q Consensus 230 G~~~~~~~~d~~i~~wd~~~~----~~~~gh~~~v-~v-a~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~ 303 (1124)
++-++++..++.+.+|...-. .....-...+ |. ..-.++.+..+|+.||.||.|++.. .+.+....
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g------- 141 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVG------- 141 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc-Cceeeeec-------
Confidence 445666677777776654311 0011112233 32 2233566888999999999999876 44333222
Q ss_pred CCCC-CCeEEEEECCCCCEEEEE--ECCCcEEEEEcCC
Q 001202 304 MDDT-GPVSCIAWTPDNSAFAVG--WKSRGLTVWSVSG 338 (1124)
Q Consensus 304 ~~h~-g~V~~lawSPDG~~Lasg--s~Dg~I~vWdv~~ 338 (1124)
.|+ .++.....+..+..++.+ |.|..++.|++..
T Consensus 142 -~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 142 -QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred -cccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 255 445555555555666666 6666666666643
No 378
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.59 E-value=85 Score=39.19 Aligned_cols=49 Identities=27% Similarity=0.442 Sum_probs=34.0
Q ss_pred EEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeec
Q 001202 42 IELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1124)
Q Consensus 42 l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~ 99 (1124)
|+|++.. +..++.. +-.+|+.....||-|-..| +.+.+|.+++|++...
T Consensus 66 I~If~~s--G~lL~~~------~w~~~~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 66 IRIFNIS--GQLLGRI------LWKHGELIGMGWSDDEELI-CVQKDGTVHVYGLLGE 114 (829)
T ss_pred EEEEecc--ccchHHH------HhcCCCeeeecccCCceEE-EEeccceEEEeecchh
Confidence 6666663 3333322 3457888999999875555 5568999999998653
No 379
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=80.82 E-value=1.4e+02 Score=36.30 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=41.4
Q ss_pred CEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECC--CCCEEEEEE---------CCCcEEEEEcC
Q 001202 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGW---------KSRGLTVWSVS 337 (1124)
Q Consensus 269 ~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP--DG~~Lasgs---------~Dg~I~vWdv~ 337 (1124)
..+.+++.||.|.-+|.++ ++.+-...... +...-..+.-+| .+..+++++ .++.+...|..
T Consensus 111 ~~V~v~~~~g~v~AlD~~T-G~~~W~~~~~~------~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~ 183 (488)
T cd00216 111 RKVFFGTFDGRLVALDAET-GKQVWKFGNND------QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVE 183 (488)
T ss_pred CeEEEecCCCeEEEEECCC-CCEeeeecCCC------CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECC
Confidence 5777888999999999988 66554444211 100000111122 123444443 35778888888
Q ss_pred CCeeeEEecc
Q 001202 338 GCRLMSTIRQ 347 (1124)
Q Consensus 338 ~~~l~~tl~~ 347 (1124)
+++.......
T Consensus 184 TG~~~W~~~~ 193 (488)
T cd00216 184 TGKLLWRFYT 193 (488)
T ss_pred CCceeeEeec
Confidence 8877766543
No 380
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=80.63 E-value=32 Score=38.01 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=57.3
Q ss_pred eEEEEEecCCcceEEEEe--cCCcEEEEEecCCceEeeeccccceecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEc-
Q 001202 210 AIIWLELCLPMRLLFVLY--SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDL- 285 (1124)
Q Consensus 210 ~I~~i~~s~~~~~~~~~s--~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~- 285 (1124)
.+.+.+.+++....+++. .+++.+.....++...... .+ ... .-+|++++.+.++...+...+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-------~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~ 95 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-------TG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDS 95 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-------cC--CccccccccCCCCEEEEEcCCCceEEEEec
Confidence 444555555555455554 4444444444433333221 11 233 6689999888888777777777742
Q ss_pred CCCCce-eEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC
Q 001202 286 AESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1124)
Q Consensus 286 ~~~~~~-~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~ 327 (1124)
.. +.. ...+... + -.+.|..+++||||.++|.-..
T Consensus 96 ~~-g~~~~~~v~~~--~----~~~~I~~l~vSpDG~RvA~v~~ 131 (253)
T PF10647_consen 96 AS-GTGEPVEVDWP--G----LRGRITALRVSPDGTRVAVVVE 131 (253)
T ss_pred CC-CcceeEEeccc--c----cCCceEEEEECCCCcEEEEEEe
Confidence 22 221 1122211 1 1228999999999998887663
No 381
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=80.33 E-value=13 Score=46.15 Aligned_cols=83 Identities=19% Similarity=0.376 Sum_probs=53.2
Q ss_pred CCceeecCCCCCCCCCceEEEEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEE--ecCCcEE
Q 001202 6 GWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVW--SPDTKLI 82 (1124)
Q Consensus 6 g~P~~l~~~~~~~~~~~~iv~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~w--SPDg~~L 82 (1124)
+|-+.-.+.+|. ..-..+..|.-++.-.+-. ..++.|||.+ .++. .+. +++.+++.+.++.| .|||+.|
T Consensus 18 ~w~~t~~~~T~i--~~~~li~gss~~k~a~V~~~~~~LtIWD~~-~~~l--E~~---~~f~~~~~I~dLDWtst~d~qsi 89 (631)
T PF12234_consen 18 EWLLTSTFETGI--SNPSLISGSSIKKIAVVDSSRSELTIWDTR-SGVL--EYE---ESFSEDDPIRDLDWTSTPDGQSI 89 (631)
T ss_pred EEEEEEEEecCC--CCcceEeecccCcEEEEECCCCEEEEEEcC-CcEE--EEe---eeecCCCceeeceeeecCCCCEE
Confidence 455544444431 2334466677555443332 3579999996 5542 222 33556788988888 6799988
Q ss_pred EEEeCCCeEEEEEe
Q 001202 83 AVVTSSLYLHIFKV 96 (1124)
Q Consensus 83 av~t~dg~l~i~~v 96 (1124)
...+-.++|.+|.-
T Consensus 90 LaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 90 LAVGFPHHVLLYTQ 103 (631)
T ss_pred EEEEcCcEEEEEEc
Confidence 88888899999864
No 382
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=80.07 E-value=0.9 Score=54.25 Aligned_cols=141 Identities=16% Similarity=0.253 Sum_probs=82.6
Q ss_pred eEEEEecCCcEEEEEecCCceEeeeccccceecCCCCeE-EEEEcc-CCCEEEEEe----cCCeEEEEEcCCCC-ceeEE
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAP-EQQILAVGT----RRGVVELYDLAESA-SLIRT 294 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v-~va~sp-dg~lLAsGs----~DgtV~vwd~~~~~-~~~~~ 294 (1124)
..++...+|++.++...+..-. ..+...+|.... |+||++ |...||.|- .|..+.|||+.+.- .+..+
T Consensus 72 IlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~ 146 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES 146 (783)
T ss_pred hhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccc
Confidence 4555667777766543322111 111224566666 999998 567788874 47789999998621 11111
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCee-eEEeccCCcCceeeeEEcC-CCCCCcceEEEe
Q 001202 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL-MSTIRQISLSSISSPIVKP-NQDCKYEPLMSG 372 (1124)
Q Consensus 295 l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l-~~tl~~h~~~~V~s~~~sp-~~~~~~~~l~sg 372 (1124)
.. ++.+....+.+++|-.|-+.+.+|...+.+.+.|+.-... ...+. +..+..+.+.| .. +++++.
T Consensus 147 ~~-----fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~~----nY~cs~ 214 (783)
T KOG1008|consen 147 PL-----FSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFSP----NYFCSN 214 (783)
T ss_pred cc-----cccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCCC----Cceecc
Confidence 11 1111233467899998999999999989999999862211 11111 22345555666 33 455544
Q ss_pred e--eEEEEe
Q 001202 373 T--SMMQWD 379 (1124)
Q Consensus 373 ~--~i~~W~ 379 (1124)
+ .+-+||
T Consensus 215 ~dg~iAiwD 223 (783)
T KOG1008|consen 215 SDGDIAIWD 223 (783)
T ss_pred ccCceeecc
Confidence 4 677898
No 383
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.00 E-value=32 Score=40.15 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=49.8
Q ss_pred eEEEEeeCCeEEEEEcCCcEEEEecCC--CceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecC
Q 001202 23 QIIYFKVNNGLLLIASPCHIELWSSSQ--HKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~~~~l~IW~~~~--~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~ 100 (1124)
.-|.|...++++.+...+++.=|-+.. +.+++.-.. ...|++.++.||||.+.|||+-++..+.+++...++
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm------~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDM------DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeee------cCCCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence 346676666655444444455555532 345554432 246899999999999999999999999999986543
No 384
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=79.56 E-value=1.2e+02 Score=34.57 Aligned_cols=89 Identities=15% Similarity=0.034 Sum_probs=42.4
Q ss_pred EEEEEecCCceEeeecccccee-cCCCCeE-E-EEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCC
Q 001202 232 LMSCSVSKKGLKLAEFIKIDKE-LGSGDAV-C-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG 308 (1124)
Q Consensus 232 ~~~~~~~d~~i~~wd~~~~~~~-~gh~~~v-~-va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g 308 (1124)
++.+....+.+..|+..+++.. ..+.+.+ + ..++.++.++++. .-+.+++.+. +..+..+.....+ ....
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~---~g~~~~~~~~-~~~~t~~~~~~~~---~~~~ 111 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE---HGVRLLDPDT-GGKITLLAEPEDG---LPLN 111 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc---cccEEEeccC-CceeEEeccccCC---CCcC
Confidence 3444445555666665544321 1122222 3 3444455444432 3456677654 4432333222112 1124
Q ss_pred CeEEEEECCCCCEEEEEEC
Q 001202 309 PVSCIAWTPDNSAFAVGWK 327 (1124)
Q Consensus 309 ~V~~lawSPDG~~Lasgs~ 327 (1124)
.-+.+...|||.+-++.-.
T Consensus 112 r~ND~~v~pdG~~wfgt~~ 130 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMG 130 (307)
T ss_pred CCCceeEcCCCCEEEeCCC
Confidence 4577888999987665433
No 385
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.25 E-value=18 Score=46.52 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=48.5
Q ss_pred ceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEe-cCcCceeeeEEEEEEecCCEEEEEEEecCC------CeEEEEE
Q 001202 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF-GDITQEQKIQSKGLLWLGKIIVVCNYIDSS------NTYELLF 525 (1124)
Q Consensus 454 ~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f-~~~~~e~~~~v~gl~W~~~~liv~~~~~~~------~~~elrl 525 (1124)
...+++|||.|+.+++|-..|++ -|...-..-+.. +-+..| .+.|.+++|...+-.+..|...+ ..++.++
T Consensus 200 ~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-~yrvl~v~Wl~t~eflvvy~n~ts~~~dpd~y~~~~ 278 (1405)
T KOG3630|consen 200 SQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-NYRVLSVTWLSTQEFLVVYGNVTSETDDPDSYDQKM 278 (1405)
T ss_pred ceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-CcceeEEEEecceeEEEEecccccCcCCchhhhhcc
Confidence 47899999999999999999999 776543322222 222333 57789999987755444443222 3344566
Q ss_pred eeC
Q 001202 526 YPR 528 (1124)
Q Consensus 526 y~~ 528 (1124)
|..
T Consensus 279 ~k~ 281 (1405)
T KOG3630|consen 279 YKI 281 (1405)
T ss_pred ccc
Confidence 655
No 386
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.88 E-value=38 Score=43.13 Aligned_cols=81 Identities=23% Similarity=0.285 Sum_probs=54.3
Q ss_pred eE-EEEEccCCCEEEEEecCCeEEEEEcCC--------CC-c--eeEEEeeccCCCCCCCCCCeEEEEECCC---CCEEE
Q 001202 259 AV-CASIAPEQQILAVGTRRGVVELYDLAE--------SA-S--LIRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAFA 323 (1124)
Q Consensus 259 ~v-~va~spdg~lLAsGs~DgtV~vwd~~~--------~~-~--~~~~l~~~~~g~~~~h~g~V~~lawSPD---G~~La 323 (1124)
.| .+.+||+|+++|..+..|.+-+.=-.. .+ . ..+++.+...-+..++...|..+.|+|. +..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 45 889999999999988877554422110 01 1 1223333222122345678999999996 57999
Q ss_pred EEECCCcEEEEEcCCC
Q 001202 324 VGWKSRGLTVWSVSGC 339 (1124)
Q Consensus 324 sgs~Dg~I~vWdv~~~ 339 (1124)
+-..|+++|+||+...
T Consensus 166 vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDP 181 (717)
T ss_pred EEecCCEEEEEecCCC
Confidence 9999999999999653
No 387
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=77.67 E-value=2.3e+02 Score=36.91 Aligned_cols=76 Identities=12% Similarity=0.213 Sum_probs=43.4
Q ss_pred CCceEEEEeeCCeEEEE-EcCCcEEEEecCCCceeEEEEe-eChHHHhhhcceeEEEEecCC------cEEEEEeCCCeE
Q 001202 20 SSQQIIYFKVNNGLLLI-ASPCHIELWSSSQHKVRLGKYK-RDSESVQREGENLQAVWSPDT------KLIAVVTSSLYL 91 (1124)
Q Consensus 20 ~~~~iv~fS~dg~llA~-~~~~~l~IW~~~~~~~~l~~~~-r~~~sl~~~G~~~~v~wSPDg------~~Lav~t~dg~l 91 (1124)
....||..-.+...+++ .+.+.+.-.-.. ...++..+. |.. -...+.++++.||. +.+|+++.++.+
T Consensus 538 ~~~~Iv~~avnr~qiVvalSngelvyfe~d-~sgql~E~~er~t----l~~~vac~ai~~~~~g~krsrfla~a~~d~~v 612 (1205)
T KOG1898|consen 538 ERVRIVKCAVNRRQIVVALSNGELVYFEGD-VSGQLNEFTERVT----LSTDVACLAIGQDPEGEKRSRFLALASVDNMV 612 (1205)
T ss_pred CceEEEEEeecceEEEEEccCCeEEEEEec-cCccceeeeeeee----eceeehhhccCCCCcchhhcceeeeeccccce
Confidence 34566654444444444 333433222222 333344442 221 12456688888887 579999999999
Q ss_pred EEEEeeecC
Q 001202 92 HIFKVQITE 100 (1124)
Q Consensus 92 ~i~~v~~~~ 100 (1124)
+++.+....
T Consensus 613 riisL~p~d 621 (1205)
T KOG1898|consen 613 RIISLDPSD 621 (1205)
T ss_pred eEEEecCcc
Confidence 999998443
No 388
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.64 E-value=10 Score=43.26 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=54.5
Q ss_pred CCCCCCeEEEEECCCCC-EEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEe
Q 001202 304 MDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (1124)
Q Consensus 304 ~~h~g~V~~lawSPDG~-~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~ 379 (1124)
+.|...|.+++|||... .+..++.+.+|+|.|+.+.....+...+ +.+++++|..+.. +.+..|- .+.++|
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~---h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDER---HVIYAGLQNGMVLVYD 264 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCc---ceeEEeccCceEEEEE
Confidence 34778899999999988 7888999999999999999888777665 5788888876641 3333333 455555
Q ss_pred CC
Q 001202 380 EY 381 (1124)
Q Consensus 380 ~~ 381 (1124)
..
T Consensus 265 ~R 266 (463)
T KOG1645|consen 265 MR 266 (463)
T ss_pred cc
Confidence 54
No 389
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=77.22 E-value=1.5e+02 Score=34.93 Aligned_cols=108 Identities=17% Similarity=0.271 Sum_probs=70.4
Q ss_pred EEEecCCc-EEEEEecCCceEeeecccccee----cCCCCeEEEEEccCCCEEEEEec---CCeEEEEEcCCCCceeEEE
Q 001202 224 FVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE----LGSGDAVCASIAPEQQILAVGTR---RGVVELYDLAESASLIRTV 295 (1124)
Q Consensus 224 ~~~s~dG~-~~~~~~~d~~i~~wd~~~~~~~----~gh~~~v~va~spdg~lLAsGs~---DgtV~vwd~~~~~~~~~~l 295 (1124)
++++++|. .+++..++..+.+.|..+.... .|. .+..++++|++..+-++.. ++++.+.|-.+ .+.+.+.
T Consensus 79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~~~~~ 156 (381)
T COG3391 79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKVTATI 156 (381)
T ss_pred eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeEEEEE
Confidence 44556665 6666656677777764443332 233 3448999999976665544 67888877766 5555554
Q ss_pred eeccCCCCCCCCCCeEEEEECCCCCEEEEEE-CCCcEEEEEcCCCeee
Q 001202 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRLM 342 (1124)
Q Consensus 296 ~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs-~Dg~I~vWdv~~~~l~ 342 (1124)
.. | ..+ ..++++|+|..+.++. .++.+.+.|..+....
T Consensus 157 ~v---G-----~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 157 PV---G-----NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred ec---C-----CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 31 2 133 7899999999666665 6789999997665543
No 390
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=76.68 E-value=1.5e+02 Score=34.09 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=75.9
Q ss_pred CeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE----------CCCcEEEEEcCCCeeeEEecc
Q 001202 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW----------KSRGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 278 gtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs----------~Dg~I~vWdv~~~~l~~tl~~ 347 (1124)
+.|.|+|.++ ++.+..+. .|-.-.+..||||+.+.++. ..-.|.+||..+-.....+.-
T Consensus 17 ~rv~viD~d~-~k~lGmi~----------~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~i 85 (342)
T PF06433_consen 17 SRVYVIDADS-GKLLGMID----------TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEI 85 (342)
T ss_dssp EEEEEEETTT-TEEEEEEE----------EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred ceEEEEECCC-CcEEEEee----------cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEec
Confidence 4788899887 77666555 23334477899999887643 233699999998776664432
Q ss_pred CC------cCceeeeEEcCCCCCCcceEE----Eee-eEEEEeCCCCeEEEEecCCcceEEEEec-cceEEeeccCCcee
Q 001202 348 IS------LSSISSPIVKPNQDCKYEPLM----SGT-SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTY 415 (1124)
Q Consensus 348 h~------~~~V~s~~~sp~~~~~~~~l~----sg~-~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~ 415 (1124)
.. .......+++.++ +.+. +.. ++-+-|.+..+.+....- .+....+.. .+...+-|.||+..
T Consensus 86 P~k~R~~~~~~~~~~~ls~dg----k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~iyP~~~~~F~~lC~DGsl~ 160 (342)
T PF06433_consen 86 PPKPRAQVVPYKNMFALSADG----KFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWLIYPSGNRGFSMLCGDGSLL 160 (342)
T ss_dssp TTS-B--BS--GGGEEE-TTS----SEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEEEEEEETTEEEEEETTSCEE
T ss_pred CCcchheecccccceEEccCC----cEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEEEEecCCCceEEEecCCceE
Confidence 11 1122345566666 3332 111 666778888877655432 233344444 45677888999887
Q ss_pred eeEee
Q 001202 416 ARQVI 420 (1124)
Q Consensus 416 ~w~l~ 420 (1124)
...+.
T Consensus 161 ~v~Ld 165 (342)
T PF06433_consen 161 TVTLD 165 (342)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 66655
No 391
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=76.65 E-value=1.3e+02 Score=33.29 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=40.7
Q ss_pred eCCeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeee
Q 001202 29 VNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (1124)
Q Consensus 29 ~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~ 98 (1124)
..++.+++++++++.+++..++..+.... +...+..+..-|+-+.+++-+ ||+|.+|++..
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~--------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRIL--------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEe--------ecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 45667777888889998883232222111 122377888888877777765 49999999864
No 392
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=76.04 E-value=1.5e+02 Score=33.80 Aligned_cols=177 Identities=14% Similarity=0.082 Sum_probs=91.9
Q ss_pred CeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCC----CCEEEEEEC----------CCcEEEEEcCCC----
Q 001202 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD----NSAFAVGWK----------SRGLTVWSVSGC---- 339 (1124)
Q Consensus 278 gtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPD----G~~Lasgs~----------Dg~I~vWdv~~~---- 339 (1124)
+.|++.|-.+ ...+.++.+.+.. +--.+..+.+..+ -.+|++|.. .|.|.++++...
T Consensus 2 s~i~l~d~~~-~~~~~~~~l~~~E----~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~ 76 (321)
T PF03178_consen 2 SSIRLVDPTT-FEVLDSFELEPNE----HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENN 76 (321)
T ss_dssp -EEEEEETTT-SSEEEEEEEETTE----EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----
T ss_pred cEEEEEeCCC-CeEEEEEECCCCc----eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccc
Confidence 3578888766 4555555544321 2223344455543 357777754 278999999873
Q ss_pred -eeeEEeccCCcCceeeeEEcCCCCCCcceEEE-eeeEEEEeCCCCe-EEEEecC-CcceEEEEec-cceEEeeccCCce
Q 001202 340 -RLMSTIRQISLSSISSPIVKPNQDCKYEPLMS-GTSMMQWDEYGYR-LYAIEEG-SSERVLIFSF-GKCCLNRGVSGMT 414 (1124)
Q Consensus 340 -~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~s-g~~i~~W~~~~~~-l~~~~~~-~~~~v~~~s~-~k~~~s~s~d~~v 414 (1124)
++...........|++++.. .+ ..+++ |.++.+|+....+ +.....- ....+..+.. +..++.|..-..+
T Consensus 77 ~~l~~i~~~~~~g~V~ai~~~-~~----~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv 151 (321)
T PF03178_consen 77 FKLKLIHSTEVKGPVTAICSF-NG----RLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSV 151 (321)
T ss_dssp -EEEEEEEEEESS-EEEEEEE-TT----EEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSE
T ss_pred eEEEEEEEEeecCcceEhhhh-CC----EEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCE
Confidence 22211111114567777654 22 43333 3388888877766 5444321 1223444444 5555555555555
Q ss_pred eeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcC
Q 001202 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (1124)
Q Consensus 415 ~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~ 481 (1124)
.+........++..... . ...-.+.++.|-+|++.++++..+|.+ ++...
T Consensus 152 ~~~~~~~~~~~l~~va~---------------d--~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 152 SLLRYDEENNKLILVAR---------------D--YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTTE-EEEEEE---------------E--SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEccCCEEEEEEe---------------c--CCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 55433332221211110 1 112236777887677899999999999 77664
No 393
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=75.97 E-value=66 Score=37.59 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=33.4
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEEcCCCCc---eeEEEeeccCCCC-CCCCCCeEEEEECCCCCEEEEEE
Q 001202 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESAS---LIRTVSLYDWGYS-MDDTGPVSCIAWTPDNSAFAVGW 326 (1124)
Q Consensus 258 ~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~---~~~~l~~~~~g~~-~~h~g~V~~lawSPDG~~Lasgs 326 (1124)
.+..+++.++| ++++ +.+...++.+.+..+. ....+- ..++.. ..+......++|.|||...++-+
T Consensus 73 ~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~-~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLL-SGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEE-EccCCCCCcccccccCceECCCCCEEEecc
Confidence 33478888888 5543 4443334445433221 111111 111111 01234578899999998666544
No 394
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=75.29 E-value=29 Score=43.10 Aligned_cols=105 Identities=17% Similarity=0.153 Sum_probs=66.6
Q ss_pred EEEecCCcEEEEEecCCceEeeecccccee----cCCCCeE-EEEEc--cCCCEEEEEecCCeEEEEEcCC-----CC--
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIA--PEQQILAVGTRRGVVELYDLAE-----SA-- 289 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~----~gh~~~v-~va~s--pdg~lLAsGs~DgtV~vwd~~~-----~~-- 289 (1124)
+..++-+++.++..+..++.+||...+... ....+.| .+.|. |+|+.+.+-+-.+.|.+|.-.. .+
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 334456777777667778889998766422 2235566 77664 6788766666788898886321 01
Q ss_pred -ceeEEEeeccCCCCCCCC-CCeEEEEECCCCCEEEEEECCCcEEEEEc
Q 001202 290 -SLIRTVSLYDWGYSMDDT-GPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1124)
Q Consensus 290 -~~~~~l~~~~~g~~~~h~-g~V~~lawSPDG~~Lasgs~Dg~I~vWdv 336 (1124)
..++.+...+ |+ .+|.+..|.+||..++.++ +.+.|+|-
T Consensus 115 w~~i~~i~i~~------~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 115 WAPIRKIDISS------HTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cceeEEEEeec------CCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 2344444322 44 5799999999998766554 36777654
No 395
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=74.61 E-value=8.9 Score=40.81 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=48.8
Q ss_pred CCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeE-EEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEec
Q 001202 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1124)
Q Consensus 268 g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~-~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~ 346 (1124)
+.-+++|+.||.|.+|+....+........ + ..+|. .|.-..++.+..++..||.|+-|++.-.+.+....
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s---~-----~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS---G-----EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhc---c-----cccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence 456899999999999998754432221110 1 12222 23333466788899999999999998777666665
Q ss_pred cC
Q 001202 347 QI 348 (1124)
Q Consensus 347 ~h 348 (1124)
+|
T Consensus 142 ~h 143 (238)
T KOG2444|consen 142 QH 143 (238)
T ss_pred cc
Confidence 55
No 396
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=73.70 E-value=8.6 Score=29.78 Aligned_cols=30 Identities=27% Similarity=0.244 Sum_probs=25.7
Q ss_pred CceEEEEEccCC---CEEEEEcCCCeE-EEEcCC
Q 001202 453 WPVQHVAASKDG---MFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 453 ~~I~~va~SpdG---~~lAvag~dG~v-lwd~~s 482 (1124)
+.|+++.|||+. ..||.+-..|.+ ++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358999999854 599999999999 999986
No 397
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=73.11 E-value=14 Score=45.67 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=30.2
Q ss_pred CCCeEEEEECC----CCCEEEEEECCCcEEEEEcCCCeeeEEec
Q 001202 307 TGPVSCIAWTP----DNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1124)
Q Consensus 307 ~g~V~~lawSP----DG~~Lasgs~Dg~I~vWdv~~~~l~~tl~ 346 (1124)
.+.+..++.++ +..+|++-+.|+++|+||+.+++++.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 214 SSVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp ---EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CCccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 34566777777 67799999999999999999999877653
No 398
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=71.36 E-value=1e+02 Score=35.57 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=17.9
Q ss_pred ceEEEee---eEEEEeCCCCeEEEEecCC
Q 001202 367 EPLMSGT---SMMQWDEYGYRLYAIEEGS 392 (1124)
Q Consensus 367 ~~l~sg~---~i~~W~~~~~~l~~~~~~~ 392 (1124)
+.+++|. .-+.|++.++.+|....+.
T Consensus 174 ~i~A~GlRN~~~~~~d~~tg~l~~~d~G~ 202 (331)
T PF07995_consen 174 EIYAYGLRNPFGLAFDPNTGRLWAADNGP 202 (331)
T ss_dssp TEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred EEEEeCCCccccEEEECCCCcEEEEccCC
Confidence 5667776 6678999989999887653
No 399
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.09 E-value=51 Score=39.38 Aligned_cols=118 Identities=17% Similarity=0.127 Sum_probs=72.1
Q ss_pred CCceEeeeccccce---ecCCCCeEEEEEccCCC--E-----EEEEecCCeEEEEEcCCCCce-eEEEeeccCCCCCCCC
Q 001202 239 KKGLKLAEFIKIDK---ELGSGDAVCASIAPEQQ--I-----LAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDT 307 (1124)
Q Consensus 239 d~~i~~wd~~~~~~---~~gh~~~v~va~spdg~--l-----LAsGs~DgtV~vwd~~~~~~~-~~~l~~~~~g~~~~h~ 307 (1124)
...+...|+..++. |.-|.+..-+.+.|+++ . =.+|-.|..|.-||..-.+.. +.....+++ + ..
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy--~--~k 430 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY--S--TK 430 (644)
T ss_pred cCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc--c--cc
Confidence 34455566666653 34455522677888743 1 235667888888887653331 111121111 1 12
Q ss_pred CCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 308 g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
.--.|.+=+.+| ++|+||.+|.||+||-.+.+-...|.+. ..+|..+..+.+|
T Consensus 431 ~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgL-G~~I~hVdvtadG 483 (644)
T KOG2395|consen 431 NNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGL-GDAIKHVDVTADG 483 (644)
T ss_pred cccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhccccc-CCceeeEEeeccC
Confidence 234566655565 7899999999999999666655566666 3578888777777
No 400
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.72 E-value=1e+02 Score=34.11 Aligned_cols=66 Identities=17% Similarity=0.324 Sum_probs=40.1
Q ss_pred CCeE-EEEEccCCCEEEEEecCCe-EEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEE
Q 001202 257 GDAV-CASIAPEQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (1124)
Q Consensus 257 ~~~v-~va~spdg~lLAsGs~Dgt-V~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vW 334 (1124)
...+ +++.|.+..+++..+-.|. .-+||.++ +..+....+.+ +..+ -+++.-+++.+.+|.+..+
T Consensus 279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~t-G~vv~~a~l~d----------aaGv--a~~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT-GAVVSEAALPD----------AAGV--AAAKGGFAVSSGQGRIIFY 345 (366)
T ss_pred HhhhhheeecccCCeEEEecCCCCeEEEEEcCC-CcEEecccccc----------cccc--eeccCceEEecCCceEEec
Confidence 4567 8999988888887776664 56899988 65544333221 1112 2344456666666777666
Q ss_pred E
Q 001202 335 S 335 (1124)
Q Consensus 335 d 335 (1124)
+
T Consensus 346 s 346 (366)
T COG3490 346 S 346 (366)
T ss_pred c
Confidence 3
No 401
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.91 E-value=16 Score=47.15 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=52.8
Q ss_pred EEEEccCCC-EEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCC
Q 001202 261 CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (1124)
Q Consensus 261 ~va~spdg~-lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~ 338 (1124)
|+.|||.-. ..|+...|+.|+|..+........++. -+..++|++|||-|+.++.|-.+|++.-|-...
T Consensus 160 ~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p---------~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 160 KNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP---------VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred cccccCCccchhhhhccccchhhhhhhhhhhhhcccC---------cccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 889999754 477888999999988765222222222 456689999999999999999999998876654
No 402
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=69.71 E-value=2.1e+02 Score=32.66 Aligned_cols=91 Identities=14% Similarity=0.246 Sum_probs=51.9
Q ss_pred EEEEccCCCEEEEEe-cCCeEEEEEcCC-CCcee--EEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCC-cEEEEE
Q 001202 261 CASIAPEQQILAVGT-RRGVVELYDLAE-SASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-GLTVWS 335 (1124)
Q Consensus 261 ~va~spdg~lLAsGs-~DgtV~vwd~~~-~~~~~--~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg-~I~vWd 335 (1124)
.++||||++.+-..- ..+.|.-|+++. .+..- ...... . .+.|.--.++...||++-+++-.+| .|.+|+
T Consensus 167 Gla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~--~---~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 167 GLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDF--D---EEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEc--c---CCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence 799999997766654 346777777762 11100 101100 0 1234445566667788775444443 889999
Q ss_pred cCCCeeeEEeccCCcCceeeeEE
Q 001202 336 VSGCRLMSTIRQISLSSISSPIV 358 (1124)
Q Consensus 336 v~~~~l~~tl~~h~~~~V~s~~~ 358 (1124)
.. ++++..++-. ...+++++|
T Consensus 242 pd-G~l~~~i~lP-~~~~t~~~F 262 (307)
T COG3386 242 PD-GKLLGEIKLP-VKRPTNPAF 262 (307)
T ss_pred CC-CcEEEEEECC-CCCCccceE
Confidence 88 5666666553 234555555
No 403
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.36 E-value=2.5e+02 Score=33.18 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=30.8
Q ss_pred CCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCe
Q 001202 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (1124)
Q Consensus 306 h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~ 340 (1124)
..|+|.++.||||.+.||+--.|++|.+.+..+.+
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence 57899999999999999999999999999885543
No 404
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=68.27 E-value=1.5e+02 Score=34.67 Aligned_cols=96 Identities=11% Similarity=0.114 Sum_probs=47.9
Q ss_pred CCeEEEEEccCCCEEEEEe-----------cCC-eEEEEEcCC-CCce--eEEEeeccCCCCCCCCCCeEEEEECCCCCE
Q 001202 257 GDAVCASIAPEQQILAVGT-----------RRG-VVELYDLAE-SASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSA 321 (1124)
Q Consensus 257 ~~~v~va~spdg~lLAsGs-----------~Dg-tV~vwd~~~-~~~~--~~~l~~~~~g~~~~h~g~V~~lawSPDG~~ 321 (1124)
..++.++|.++|++.++-. ..+ .|.+++-.+ .+.. ...+. . .......+++.++| .
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa----~----~l~~p~Gi~~~~~G-l 84 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA----E----ELSMVTGLAVAVGG-V 84 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee----c----CCCCccceeEecCC-E
Confidence 4556777788877766542 223 565554322 1221 11221 0 12335779999999 4
Q ss_pred EEEEECCCcEEEEEcCCC--------eeeEEeccC---CcCceeeeEEcCCC
Q 001202 322 FAVGWKSRGLTVWSVSGC--------RLMSTIRQI---SLSSISSPIVKPNQ 362 (1124)
Q Consensus 322 Lasgs~Dg~I~vWdv~~~--------~l~~tl~~h---~~~~V~s~~~sp~~ 362 (1124)
++ +.....+++.+..+. .++..+... +......+++.|++
T Consensus 85 yV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG 135 (367)
T TIGR02604 85 YV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG 135 (367)
T ss_pred EE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC
Confidence 44 445444444455431 122223221 12346677788876
No 405
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=68.10 E-value=1.9e+02 Score=31.76 Aligned_cols=209 Identities=11% Similarity=0.045 Sum_probs=94.5
Q ss_pred ceEEEEeeCC-eEEEEEcCC-cEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeec
Q 001202 22 QQIIYFKVNN-GLLLIASPC-HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1124)
Q Consensus 22 ~~iv~fS~dg-~llA~~~~~-~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~ 99 (1124)
-.-+.++||+ +++|+.... .|...+. .+..+.... +...|-.-.|++.-+++++++.-.++.|.++++...
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~--~G~vlr~i~-----l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL--DGKVLRRIP-----LDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET--T--EEEEEE------SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC--CCCEEEEEe-----CCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence 3558999985 566665544 4544444 333343332 344677788999888877666656888999988543
Q ss_pred CceeecCCCCCCCcceeeEEEEeeeeeecccccceE--EEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCcc
Q 001202 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (1124)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~ 177 (1124)
...+... ....+.+.+. ..+.... .|.-+.+++++++-...-..++.+++... ...+
T Consensus 97 ~~~~~~~-------~~~~~~l~~~-----~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~-~~~~-------- 155 (248)
T PF06977_consen 97 TTSLDRA-------DVQKISLGFP-----NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG-GFDL-------- 155 (248)
T ss_dssp -TT--EE-------EEEEEE---S--------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT--SS----------
T ss_pred ccccchh-------hceEEecccc-----cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC-ccce--------
Confidence 2211000 0011111111 0111112 24444557777776655555666664211 0000
Q ss_pred ccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCce-Eeeeccccce--ec
Q 001202 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL-KLAEFIKIDK--EL 254 (1124)
Q Consensus 178 ~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i-~~wd~~~~~~--~~ 254 (1124)
.+.... .+. ........+..+.|+|..+.+.+++..++.++.-..++.+ ..+....+.. ..
T Consensus 156 ~~~~~~-----~~~-----------~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~ 219 (248)
T PF06977_consen 156 FVSDDQ-----DLD-----------DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSK 219 (248)
T ss_dssp EEEE-H-----HHH------------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS
T ss_pred eecccc-----ccc-----------cccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCccc
Confidence 000000 000 0001122356778899888888888888877765555554 3333332210 01
Q ss_pred CCCCeEEEEEccCCCEEEEE
Q 001202 255 GSGDAVCASIAPEQQILAVG 274 (1124)
Q Consensus 255 gh~~~v~va~spdg~lLAsG 274 (1124)
....+-.++|.++|++.++.
T Consensus 220 ~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 220 DIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp ---SEEEEEE-TT--EEEEE
T ss_pred ccCCccEEEECCCCCEEEEc
Confidence 11234488999999877665
No 406
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=68.07 E-value=2.5e+02 Score=35.01 Aligned_cols=68 Identities=21% Similarity=0.330 Sum_probs=42.4
Q ss_pred EEccCCCEEEEEcCCC------eE-EEEcCCCcEEEecCcCceeeeEEEEEEecCCEE-EEEEEecCCCeEEEEEeeC
Q 001202 459 AASKDGMFLAVAGLHG------LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKII-VVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 459 a~SpdG~~lAvag~dG------~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~l-iv~~~~~~~~~~elrly~~ 528 (1124)
...-+|+..++||.+| .+ .||..+++|+........+ ...+++-.++.| ++|++++......+..|+.
T Consensus 423 v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R--~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 423 VAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR--SGFGVAVLNGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred EEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc--ccceEEEECCEEEEECCccCCCccceEEEEcC
Confidence 3345899999999654 56 9999999999765443332 123455555554 5555544333445666765
No 407
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=67.15 E-value=12 Score=29.04 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=26.1
Q ss_pred cceeEEEEecCCc---EEEEEeCCCeEEEEEeee
Q 001202 68 GENLQAVWSPDTK---LIAVVTSSLYLHIFKVQI 98 (1124)
Q Consensus 68 G~~~~v~wSPDg~---~Lav~t~dg~l~i~~v~~ 98 (1124)
|.+.++.|||++. .||.+-..|.++|+|+..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5567899998655 899998999999999974
No 408
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.77 E-value=1.5e+02 Score=37.05 Aligned_cols=52 Identities=15% Similarity=0.453 Sum_probs=35.7
Q ss_pred CeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCe
Q 001202 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (1124)
Q Consensus 278 gtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~ 340 (1124)
-.|+||++. |..+.++. | ..+.+-.+.||-|- .|+.-..||++.|++..|..
T Consensus 64 ~~I~If~~s--G~lL~~~~---w-----~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 64 PYIRIFNIS--GQLLGRIL---W-----KHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred eeEEEEecc--ccchHHHH---h-----cCCCeeeecccCCc-eEEEEeccceEEEeecchhh
Confidence 457888875 44444332 1 23478899999665 55566789999999997753
No 409
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=65.46 E-value=11 Score=28.06 Aligned_cols=28 Identities=29% Similarity=0.564 Sum_probs=18.8
Q ss_pred hcceeEEEEecCCcEEEEEeCC---CeEEEE
Q 001202 67 EGENLQAVWSPDTKLIAVVTSS---LYLHIF 94 (1124)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~d---g~l~i~ 94 (1124)
.+......|||||+.|+-++.. |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3556789999999988876644 444444
No 410
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=64.10 E-value=20 Score=42.33 Aligned_cols=96 Identities=23% Similarity=0.275 Sum_probs=55.7
Q ss_pred EEEEccCCCEEEEEecCCeEEE---EEcCCCCceeEEEeeccCCCCCCCC--CCeEEEEEC-----------CCCCEEEE
Q 001202 261 CASIAPEQQILAVGTRRGVVEL---YDLAESASLIRTVSLYDWGYSMDDT--GPVSCIAWT-----------PDNSAFAV 324 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~DgtV~v---wd~~~~~~~~~~l~~~~~g~~~~h~--g~V~~lawS-----------PDG~~Las 324 (1124)
+++.+|++.+||.|..+..|-+ |+.+..+....+....-.|.. .+. ..|+++.|- ||..++++
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l-~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~V 84 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPL-DDEPGECITSILCLPLSSQKRSTGGPDWTCIAV 84 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeec-cCCCCCEEEEEEEEEeecccccCCCCCcEEEEE
Confidence 5778888888888877766655 544221211111111000111 111 345555442 56789999
Q ss_pred EECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEc
Q 001202 325 GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (1124)
Q Consensus 325 gs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~s 359 (1124)
|..+|.|++++-.|..++..+- | .++|..+...
T Consensus 85 G~ssG~vrfyte~G~LL~~Q~~-h-~~pV~~ik~~ 117 (415)
T PF14655_consen 85 GTSSGYVRFYTENGVLLLSQLL-H-EEPVLKIKCR 117 (415)
T ss_pred EecccEEEEEeccchHHHHHhc-C-ccceEEEEec
Confidence 9999999999997765444332 3 4566666653
No 411
>PHA03098 kelch-like protein; Provisional
Probab=63.42 E-value=2.6e+02 Score=34.46 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=22.8
Q ss_pred CCCEEEEEcCC-----CeE-EEEcCCCcEEEecC
Q 001202 463 DGMFLAVAGLH-----GLI-LYDIRQKKWRVFGD 490 (1124)
Q Consensus 463 dG~~lAvag~d-----G~v-lwd~~sg~wk~f~~ 490 (1124)
+|+.++.||.+ ..+ .||..+++|..+..
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 78888888865 467 99999999998764
No 412
>PHA02713 hypothetical protein; Provisional
Probab=63.25 E-value=2.1e+02 Score=35.67 Aligned_cols=27 Identities=11% Similarity=0.340 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCC--eE-EEEcCCCcEEEec
Q 001202 463 DGMFLAVAGLHG--LI-LYDIRQKKWRVFG 489 (1124)
Q Consensus 463 dG~~lAvag~dG--~v-lwd~~sg~wk~f~ 489 (1124)
+|+..++||.+| .+ .||..+++|....
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHIC 541 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchh
Confidence 899999999999 67 9999999998654
No 413
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=63.01 E-value=19 Score=26.73 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=16.2
Q ss_pred CCCceEEEEEccCCCEEEEEcCC
Q 001202 451 QNWPVQHVAASKDGMFLAVAGLH 473 (1124)
Q Consensus 451 ~~~~I~~va~SpdG~~lAvag~d 473 (1124)
....-...+|||||++|+-++..
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEEC
T ss_pred CCccccCEEEecCCCEEEEEecC
Confidence 34456788999999999865543
No 414
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=62.93 E-value=1.4e+02 Score=32.26 Aligned_cols=94 Identities=9% Similarity=0.125 Sum_probs=59.7
Q ss_pred EEEEccCCCE-EEEEecCCeEEEEEcCCC-Cc-----eeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEE
Q 001202 261 CASIAPEQQI-LAVGTRRGVVELYDLAES-AS-----LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (1124)
Q Consensus 261 ~va~spdg~l-LAsGs~DgtV~vwd~~~~-~~-----~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~v 333 (1124)
.++|+.|.+. -.+-+.+-+|.-||.+-. +. .+..++..+ +.+|.-| -.++...+|...++.+.-++|.-
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~---~~e~~~P-DGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ---PFESLEP-DGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC---CcCCCCC-CcceEccCCcEEEEEecCcEEEE
Confidence 4567766654 445677888888985432 21 122222110 0112111 12333557888899999999999
Q ss_pred EEcCCCeeeEEeccCCcCceeeeEEc
Q 001202 334 WSVSGCRLMSTIRQISLSSISSPIVK 359 (1124)
Q Consensus 334 Wdv~~~~l~~tl~~h~~~~V~s~~~s 359 (1124)
.|..+|+.+.++.-. ...+++++|.
T Consensus 238 ~dp~tGK~L~eiklP-t~qitsccFg 262 (310)
T KOG4499|consen 238 VDPTTGKILLEIKLP-TPQITSCCFG 262 (310)
T ss_pred ECCCCCcEEEEEEcC-CCceEEEEec
Confidence 999999999888776 6778888884
No 415
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=62.72 E-value=12 Score=25.94 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=18.8
Q ss_pred eeEEEEecCCcEEEEEeCCCeEEEEE
Q 001202 70 NLQAVWSPDTKLIAVVTSSLYLHIFK 95 (1124)
Q Consensus 70 ~~~v~wSPDg~~Lav~t~dg~l~i~~ 95 (1124)
+.+++-++ +++|++|+.++||+|.
T Consensus 4 i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 4 IEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred EEEEEccC--CEEEEEeCCCeEEecC
Confidence 34566554 5999999999999984
No 416
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=60.98 E-value=3.4e+02 Score=32.18 Aligned_cols=131 Identities=11% Similarity=-0.009 Sum_probs=65.3
Q ss_pred EEEecCCcEEEEEecCCceEeeecccc--cee-cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeE--EEee
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKI--DKE-LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIR--TVSL 297 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~--~~~-~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~--~l~~ 297 (1124)
+..++||++++.+....-.+-|+.-.. +.. ......+ .+.+.+++.+++++ .+|.+. +..+. +.... .+..
T Consensus 244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~-G~~~~~~~f~~ 320 (398)
T PLN00033 244 VNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGT-GLTEEDFDFEE 320 (398)
T ss_pred EEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCC-CCcccccceee
Confidence 345577777776654433333332100 000 1222334 88899999988776 566653 33333 32111 2221
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEecc--CCcCceeeeEEcCCC
Q 001202 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ--ISLSSISSPIVKPNQ 362 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~--h~~~~V~s~~~sp~~ 362 (1124)
.... .....+.++.|.+|+..+++|. +|.+. ....+++....... .-......+.|.+++
T Consensus 321 ~~~~---~~~~~l~~v~~~~d~~~~a~G~-~G~v~-~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~ 382 (398)
T PLN00033 321 ADIK---SRGFGILDVGYRSKKEAWAAGG-SGILL-RSTDGGKSWKRDKGADNIAANLYSVKFFDDK 382 (398)
T ss_pred cccC---CCCcceEEEEEcCCCcEEEEEC-CCcEE-EeCCCCcceeEccccCCCCcceeEEEEcCCC
Confidence 1111 0123489999999988777764 35444 44555554333321 112345566665544
No 417
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.77 E-value=2.6e+02 Score=30.70 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=16.4
Q ss_pred CCCEEEEEcCCCeE-EEEcCCC
Q 001202 463 DGMFLAVAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 463 dG~~lAvag~dG~v-lwd~~sg 483 (1124)
+| .|.+|++|..+ .||+.++
T Consensus 333 ~g-rl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 333 DG-RLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred cc-EEEEEEccCeEEEEecccc
Confidence 45 47889999999 9998774
No 418
>PRK10115 protease 2; Provisional
Probab=60.09 E-value=4.7e+02 Score=33.45 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCEEEEEECCC-----cEEEEEcCCCe
Q 001202 309 PVSCIAWTPDNSAFAVGWKSR-----GLTVWSVSGCR 340 (1124)
Q Consensus 309 ~V~~lawSPDG~~Lasgs~Dg-----~I~vWdv~~~~ 340 (1124)
.+..+.|||||++||-+-+.+ .|.+-|+.++.
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~ 164 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN 164 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC
Confidence 367789999999888765433 46666666553
No 419
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=58.73 E-value=1.9e+02 Score=28.52 Aligned_cols=114 Identities=16% Similarity=0.220 Sum_probs=63.4
Q ss_pred EEccCCCEEEEEecCCeEEEEEcCCC-------CceeEEEeeccCCCCCCCCCCeEEEE---ECC--CCCEEEEEECCCc
Q 001202 263 SIAPEQQILAVGTRRGVVELYDLAES-------ASLIRTVSLYDWGYSMDDTGPVSCIA---WTP--DNSAFAVGWKSRG 330 (1124)
Q Consensus 263 a~spdg~lLAsGs~DgtV~vwd~~~~-------~~~~~~l~~~~~g~~~~h~g~V~~la---wSP--DG~~Lasgs~Dg~ 330 (1124)
.|.....-|+.++.-|+|.|++.... ...+..+.. ...|++++ |.| +...|+.|+.. .
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---------n~~italaaG~l~~~~~~D~LliGt~t-~ 74 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---------NQEITALAAGRLKPDDGRDCLLIGTQT-S 74 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC---------CCceEEEEEEecCCCCCcCEEEEeccc-e
Confidence 34445556777778888888875431 122334442 23466664 433 34588888874 8
Q ss_pred EEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee--eEEEEeCCCCeEEEE
Q 001202 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAI 388 (1124)
Q Consensus 331 I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l~~~ 388 (1124)
+-.||+....-+..-. - .+.|+++.+..-+....+.++.|. ++.-++.+|.+++-+
T Consensus 75 llaYDV~~N~d~Fyke-~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 75 LLAYDVENNSDLFYKE-V-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred EEEEEcccCchhhhhh-C-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 9999997654322111 1 345666666433322224444444 555566666666544
No 420
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=58.03 E-value=2.2e+02 Score=34.32 Aligned_cols=48 Identities=6% Similarity=-0.046 Sum_probs=28.6
Q ss_pred ceEEEEecCCcEEEEEecCCceEeeeccccce---------ec--CCCCeEEEEEccCC
Q 001202 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---------EL--GSGDAVCASIAPEQ 268 (1124)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~---------~~--gh~~~v~va~spdg 268 (1124)
...+++.|||+++++....+.++.++...... .. +......++++|++
T Consensus 32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 35667778888777665556666664332211 11 32333499999997
No 421
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=57.54 E-value=1.9e+02 Score=36.33 Aligned_cols=31 Identities=32% Similarity=0.412 Sum_probs=27.0
Q ss_pred ceeEEEEecCCcEEEEEeCCCeEEEEEeeec
Q 001202 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1124)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~ 99 (1124)
.++..+||-|-+.+++.|++..|.+++-.++
T Consensus 114 GIvaa~wS~DE~~~cvvt~~r~il~~~k~fd 144 (1243)
T COG5290 114 GIVAASWSADEKTWCVVTSTREILLFDKYFD 144 (1243)
T ss_pred ceEEEeeccCCceEEEEEcCceEEEEecccc
Confidence 4578999999999999999999999887655
No 422
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.46 E-value=53 Score=39.19 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=55.6
Q ss_pred EEEecCCceEeeeccccce----e-cCCC-----CeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeE-EEeeccCCC
Q 001202 234 SCSVSKKGLKLAEFIKIDK----E-LGSG-----DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIR-TVSLYDWGY 302 (1124)
Q Consensus 234 ~~~~~d~~i~~wd~~~~~~----~-~gh~-----~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~-~l~~~~~g~ 302 (1124)
+.|.++..+..||..-... + ++|. +--|.+-..+| +||+|+.+|.||+||- . +..-+ .++ |
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i-~~~AKTAlP----g- 469 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-I-GRRAKTALP----G- 469 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-h-hhhhhhccc----c-
Confidence 3456677777787652211 1 2221 22255555554 7999999999999996 2 22222 222 2
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEc
Q 001202 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1124)
Q Consensus 303 ~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv 336 (1124)
-..+|..|..+.||+.|...+. .++-+-++
T Consensus 470 ---LG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 470 ---LGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred ---cCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 4567999999999998776554 35544443
No 423
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=56.27 E-value=5.6e+02 Score=33.16 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=42.8
Q ss_pred CCEEEEEecCCeEEEEEcCCCCceeEEEeec---cC--CCCCCCCCCeEEEEECC--CCCEEEEEEC----------CCc
Q 001202 268 QQILAVGTRRGVVELYDLAESASLIRTVSLY---DW--GYSMDDTGPVSCIAWTP--DNSAFAVGWK----------SRG 330 (1124)
Q Consensus 268 g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~---~~--g~~~~h~g~V~~lawSP--DG~~Lasgs~----------Dg~ 330 (1124)
+..|..++.||.+.-.|.++ ++....+... ++ +......+. ..+.-+| .+..+++|+. +|.
T Consensus 260 ~~rV~~~T~Dg~LiALDA~T-Gk~~W~fg~~G~vdl~~~~g~~~~g~-~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADT-GKLCEDFGNNGTVDLTAGMGTTPPGY-YYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred CCEEEEecCCCeEEEEECCC-CCEEEEecCCCceeeecccCcCCCcc-cccccCCEEECCEEEEEecccccccccCCCcE
Confidence 44777888899888888877 6555433210 00 000000000 1112223 1334555542 588
Q ss_pred EEEEEcCCCeeeEEec
Q 001202 331 LTVWSVSGCRLMSTIR 346 (1124)
Q Consensus 331 I~vWdv~~~~l~~tl~ 346 (1124)
|+-+|+.+|++...+.
T Consensus 338 I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 338 IRAFDVNTGALVWAWD 353 (764)
T ss_pred EEEEECCCCcEeeEEe
Confidence 9999999999887764
No 424
>PRK13684 Ycf48-like protein; Provisional
Probab=54.98 E-value=3.8e+02 Score=30.82 Aligned_cols=123 Identities=12% Similarity=0.074 Sum_probs=63.4
Q ss_pred CceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccceecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcC
Q 001202 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLA 286 (1124)
Q Consensus 208 ~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~ 286 (1124)
...+.++...++. ..+++...|.++.+. .++. +.|.... .+-...+ ++++.++++++++| ..|.+++=..+
T Consensus 172 ~g~~~~i~~~~~g-~~v~~g~~G~i~~s~-~~gg-~tW~~~~----~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAVSSRGNFYSTW-EPGQ-TAWTPHQ----RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCC-eEEEEeCCceEEEEc-CCCC-CeEEEee----CCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC
Confidence 3456666666543 344555566555431 1111 2233221 1222344 88999999988876 46776432233
Q ss_pred CCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEe
Q 001202 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (1124)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl 345 (1124)
. +........... .....+..+.+.|++..+++| .+|.+ +.+..+++.....
T Consensus 244 ~-G~sW~~~~~~~~----~~~~~l~~v~~~~~~~~~~~G-~~G~v-~~S~d~G~tW~~~ 295 (334)
T PRK13684 244 D-LESWSKPIIPEI----TNGYGYLDLAYRTPGEIWAGG-GNGTL-LVSKDGGKTWEKD 295 (334)
T ss_pred C-CCccccccCCcc----ccccceeeEEEcCCCCEEEEc-CCCeE-EEeCCCCCCCeEC
Confidence 3 333222221100 012347889999988866655 45544 4566666544433
No 425
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=54.64 E-value=4e+02 Score=31.53 Aligned_cols=76 Identities=18% Similarity=0.103 Sum_probs=39.6
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEc
Q 001202 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1124)
Q Consensus 257 ~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv 336 (1124)
.+.|++++|.....+++++.. ....||..+ +.+..+.... +++.-..+.|.+++|. ||+++.+--.-+.+.+=++
T Consensus 89 sgrVsMah~~~sq~V~i~G~~-~gYrYdgat--~~l~~~~~~~-~~p~y~~g~v~Dv~~~-dGryVw~~pgt~~f~vSdL 163 (469)
T PF11134_consen 89 SGRVSMAHSGGSQAVAINGKL-KGYRYDGAT--KTLSNWPTDE-GYPQYDLGDVVDVTRL-DGRYVWVKPGTGYFFVSDL 163 (469)
T ss_pred CceEEEEeCCceeEEEEcccc-ceEEEechh--hHhhcCCCcC-cccccCccceeEEEec-cceEEEEeCCCceEEEeec
Confidence 567799998888777776432 233444433 2222221111 1222245668899886 7887763222223444444
Q ss_pred C
Q 001202 337 S 337 (1124)
Q Consensus 337 ~ 337 (1124)
.
T Consensus 164 ~ 164 (469)
T PF11134_consen 164 E 164 (469)
T ss_pred c
Confidence 3
No 426
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=54.17 E-value=48 Score=39.28 Aligned_cols=81 Identities=20% Similarity=0.241 Sum_probs=53.0
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCC--------------CCEEE-EE
Q 001202 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--------------NSAFA-VG 325 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPD--------------G~~La-sg 325 (1124)
++..+|++++.|+...=|.|.|+|+.. +..++-++ ||..++-+.+....=... ..+|+ =+
T Consensus 312 ~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWK----GYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 312 SICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWK----GYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCC-Chhhhhhc----cCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 899999999999987779999999987 66666555 543333333222211111 12333 34
Q ss_pred ECCCcEEEEEcCCCeeeEEec
Q 001202 326 WKSRGLTVWSVSGCRLMSTIR 346 (1124)
Q Consensus 326 s~Dg~I~vWdv~~~~l~~tl~ 346 (1124)
-.-|.|-||++..+..+.++.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 456889999998887666553
No 427
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.44 E-value=2.6e+02 Score=37.50 Aligned_cols=110 Identities=22% Similarity=0.379 Sum_probs=60.0
Q ss_pred cCCcEEEEecCCCceeEEEEeeChHHHhhhccee--EEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcce
Q 001202 38 SPCHIELWSSSQHKVRLGKYKRDSESVQREGENL--QAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFF 115 (1124)
Q Consensus 38 ~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~--~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~ 115 (1124)
-|+.+.||+.+ .+.....+..-...+-.-|-+. .=.|=|+=+++.+.++--.|.|+-+..++...-. ..
T Consensus 97 iDn~L~lWny~-~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~--------~~ 167 (1311)
T KOG1900|consen 97 IDNNLFLWNYE-SDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL--------SI 167 (1311)
T ss_pred eCCeEEEEEcC-CCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc--------cc
Confidence 36789999997 3334444422222211111000 0113444466666666677889988765432110 11
Q ss_pred eeEEEEeeeeeecccccceEEEEe-ecCCeEEEEecCCcEEEEeccCc
Q 001202 116 IKISLVLNEQLPFAEKGLSVSNIV-SDNKHMLLGLSDGSLYSISWKGE 162 (1124)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~v~~i~-~d~~~llv~t~dg~v~~~~Wd~~ 162 (1124)
.... . .+..+...|+||. .++.+++.++.||.++-+.+..+
T Consensus 168 f~~~----~--~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~ 209 (1311)
T KOG1900|consen 168 FNTS----F--KISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAE 209 (1311)
T ss_pred cccc----e--eeecCCceEEEEEeccCCcEEEeecCCCEEEEEEecc
Confidence 0101 1 2233455788988 46678999999998877766654
No 428
>PRK13684 Ycf48-like protein; Provisional
Probab=52.97 E-value=4.1e+02 Score=30.57 Aligned_cols=117 Identities=10% Similarity=0.074 Sum_probs=62.0
Q ss_pred CeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEc
Q 001202 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1124)
Q Consensus 258 ~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv 336 (1124)
..+ ++.+.|++.++++|. .|.+.. ..+..++....... + -...++++.+.|+|+.+++|. .|.+.+=+.
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~-s~~~gg~tW~~~~~---~----~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~ 242 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYS-TWEPGQTAWTPHQR---N----SSRRLQSMGFQPDGNLWMLAR-GGQIRFNDP 242 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEE-EcCCCCCeEEEeeC---C----CcccceeeeEcCCCCEEEEec-CCEEEEccC
Confidence 445 889999998887774 455432 22231232322221 2 346789999999999877764 455532235
Q ss_pred CCCeeeEEeccC---CcCceeeeEEcCCCCCCcceEEEee-eEEEEeCCCCeEEEE
Q 001202 337 SGCRLMSTIRQI---SLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAI 388 (1124)
Q Consensus 337 ~~~~l~~tl~~h---~~~~V~s~~~sp~~~~~~~~l~sg~-~i~~W~~~~~~l~~~ 388 (1124)
.++......... ....+.++.+.|++ ..++.|. -.+....++++-|..
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~----~~~~~G~~G~v~~S~d~G~tW~~ 294 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPG----EIWAGGGNGTLLVSKDGGKTWEK 294 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCC----CEEEEcCCCeEEEeCCCCCCCeE
Confidence 554432221111 01235666777655 4555443 333344455555444
No 429
>PHA02790 Kelch-like protein; Provisional
Probab=52.67 E-value=5e+02 Score=31.52 Aligned_cols=64 Identities=11% Similarity=0.170 Sum_probs=37.5
Q ss_pred ccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeC
Q 001202 461 SKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 461 SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~ 528 (1124)
.-+|+..++|| .+ .||..+++|.........+ .......-.+.+.++|++........+.+|+.
T Consensus 405 ~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r-~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 405 VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPR-DNPELIIVDNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCc-cccEEEEECCEEEEECCcCCCcccceEEEEEC
Confidence 44677777775 46 8999999999876544332 12222334455667776542222234566655
No 430
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=52.53 E-value=3.2e+02 Score=29.25 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=30.6
Q ss_pred CEEEEEECCCcEEEEEcC--CCeeeEEeccCCcCceeeeEEcCCCCCCcceEE
Q 001202 320 SAFAVGWKSRGLTVWSVS--GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM 370 (1124)
Q Consensus 320 ~~Lasgs~Dg~I~vWdv~--~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~ 370 (1124)
..|..+...+.|.+|++. ...+++++..- +.|..+.++..| ++++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv--~~V~~l~y~~~G----DYlv 75 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV--GRVLQLVYSEAG----DYLV 75 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch--hheeEEEecccc----ceEE
Confidence 344443455789999987 56677777653 567777777777 5555
No 431
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.95 E-value=72 Score=34.38 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=47.9
Q ss_pred EccCCCEEEEEecCCeEEEEEcCCCCceeE-EEeeccCCCC-----CCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcC
Q 001202 264 IAPEQQILAVGTRRGVVELYDLAESASLIR-TVSLYDWGYS-----MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (1124)
Q Consensus 264 ~spdg~lLAsGs~DgtV~vwd~~~~~~~~~-~l~~~~~g~~-----~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~ 337 (1124)
+..++.++.+-+.+|.+++||+.+ .+... ..++...-.. ......|..+..+.+|.-+++-+ +|....|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~-~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKK-GKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCC-CeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 456677888888999999999987 43322 1111100000 02456788899999998777765 4677888775
Q ss_pred CC
Q 001202 338 GC 339 (1124)
Q Consensus 338 ~~ 339 (1124)
=+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 43
No 432
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.20 E-value=1.2e+02 Score=36.23 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=27.2
Q ss_pred CeEEEEECCCC---CEEEEEECCCcEEEEEcCCCeee
Q 001202 309 PVSCIAWTPDN---SAFAVGWKSRGLTVWSVSGCRLM 342 (1124)
Q Consensus 309 ~V~~lawSPDG---~~Lasgs~Dg~I~vWdv~~~~l~ 342 (1124)
.+..++|+|+. ..|..-..|.+||+||...-..+
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 36788999986 57888888999999999765433
No 433
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=50.04 E-value=18 Score=45.49 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=63.0
Q ss_pred EeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEec
Q 001202 138 IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (1124)
Q Consensus 138 i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s 217 (1124)
+++..-++-++.++|.++++.|+.....-+ ..|...++++++-
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~-------------------------------------rsHs~~~~d~a~~ 233 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALRSLF-------------------------------------RSHSQRVTDMAFF 233 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHHHHH-------------------------------------HhcCCCcccHHHH
Confidence 444455555666889999999986543211 1122233333221
Q ss_pred -CCcceEEEEecCCcEEEEEecCCceEeeecc-ccc----e---ecCCCC-e-EEEEEccC---------CCEEEEEe-c
Q 001202 218 -LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI-KID----K---ELGSGD-A-VCASIAPE---------QQILAVGT-R 276 (1124)
Q Consensus 218 -~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~-~~~----~---~~gh~~-~-v~va~spd---------g~lLAsGs-~ 276 (1124)
.......-++|||+.+++.+.||.++.|..- +++ + |..|++ + ||.-+..+ ..++.+++ .
T Consensus 234 ~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~ 313 (1283)
T KOG1916|consen 234 AEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDV 313 (1283)
T ss_pred hhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccC
Confidence 1222344478999999999999999988653 222 1 244552 2 24433332 12344443 4
Q ss_pred CCeEEEEEcCC
Q 001202 277 RGVVELYDLAE 287 (1124)
Q Consensus 277 DgtV~vwd~~~ 287 (1124)
+..+++|.-..
T Consensus 314 nre~k~w~~a~ 324 (1283)
T KOG1916|consen 314 NREEKFWAEAP 324 (1283)
T ss_pred CcceeEeeccc
Confidence 55788887554
No 434
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=49.83 E-value=88 Score=32.25 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=27.0
Q ss_pred CCCeEEEEECCCC------CEEEEEECCCcEEEEEcCCC
Q 001202 307 TGPVSCIAWTPDN------SAFAVGWKSRGLTVWSVSGC 339 (1124)
Q Consensus 307 ~g~V~~lawSPDG------~~Lasgs~Dg~I~vWdv~~~ 339 (1124)
.+.|..++|||-| ..||+...++.+.||.-.+.
T Consensus 85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 3479999999954 48899999999999987654
No 435
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.29 E-value=69 Score=38.19 Aligned_cols=76 Identities=11% Similarity=0.138 Sum_probs=47.9
Q ss_pred EEEeeCCeEEEEEcCCcEEEEecCC---------Cc--eeEEEEeeChHHH---hhhcceeEEEEecCC---cEEEEEeC
Q 001202 25 IYFKVNNGLLLIASPCHIELWSSSQ---------HK--VRLGKYKRDSESV---QREGENLQAVWSPDT---KLIAVVTS 87 (1124)
Q Consensus 25 v~fS~dg~llA~~~~~~l~IW~~~~---------~~--~~l~~~~r~~~sl---~~~G~~~~v~wSPDg---~~Lav~t~ 87 (1124)
|..|+.|+.+|.++.++|.|-...+ .+ +.++....-.+.+ ..+=....++|-||+ ..|.+-++
T Consensus 109 vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~s 188 (741)
T KOG4460|consen 109 VLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTS 188 (741)
T ss_pred EEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEec
Confidence 4468889999998888777755511 01 1111110000000 012335678999998 78999999
Q ss_pred CCeEEEEEeeecC
Q 001202 88 SLYLHIFKVQITE 100 (1124)
Q Consensus 88 dg~l~i~~v~~~~ 100 (1124)
|+.+|+|+.....
T Consensus 189 dnviRiy~lS~~t 201 (741)
T KOG4460|consen 189 DNVIRIYSLSEPT 201 (741)
T ss_pred CcEEEEEecCCcc
Confidence 9999999997654
No 436
>PHA03098 kelch-like protein; Provisional
Probab=48.83 E-value=4e+02 Score=32.73 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=38.0
Q ss_pred EccCCCEEEEEcCCC--------eE-EEEcCCCcEEEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeC
Q 001202 460 ASKDGMFLAVAGLHG--------LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 460 ~SpdG~~lAvag~dG--------~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~ 528 (1124)
..-+|+.+++||.++ .+ .||..+++|.........+ .........+...++|+.........+.+|+.
T Consensus 434 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 434 IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-INASLCIFNNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc-ccceEEEECCEEEEEcCCcCCcccceeEEEeC
Confidence 334777788887542 26 9999999999876433222 11112223444555565433222345666755
No 437
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.47 E-value=76 Score=39.87 Aligned_cols=163 Identities=20% Similarity=0.252 Sum_probs=93.9
Q ss_pred ccccHHHHHHHHHhcccHHHH--HHH-HHHcC----CCCCchHHHHHHHHH---HhhcccccccccccccCCccccchhh
Q 001202 757 AQTILHCLLRHLLQRDKIEEA--LRL-AQLSA----EKPHFSHCLEWLLFT---VFDAEISRQNINKNQISIPKRAASFS 826 (1124)
Q Consensus 757 ~~~~L~~il~~ll~~~~~~~a--~~~-a~~~~----~l~~F~h~LE~lLh~---vle~e~~~~~~~~~~~~i~~~~~~~~ 826 (1124)
.++|++..-.-|..++-|.-+ +.+ .+.|+ .+.||.-+.+=|.+. +.+..- .|..+-..|+| |
T Consensus 177 ~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~y---speydv~gi~d-----P 248 (866)
T KOG1062|consen 177 VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGY---SPEYDVHGISD-----P 248 (866)
T ss_pred HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCC---CCccCccCCCc-----h
Confidence 355666655555555544322 222 23333 477888877766654 222221 12233335666 6
Q ss_pred hHH-HHHHHhH----c----CchhHHHHHhhcccccccchHHHHhhcCChHHHHH-------HHHhcCcHHHHhhHH---
Q 001202 827 LLE-KTCNFIR----N----FPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFE-------ECFQRRWYRTAACYI--- 887 (1124)
Q Consensus 827 ll~-~v~~fi~----~----f~~~l~ivv~caRKtE~~~W~~LF~~~g~P~~Lf~-------~cl~~~~l~taa~yL--- 887 (1124)
.|+ +++++|+ . .+.+-+|..+.|||||.. ..+|+- -||| .--+.+-...|++.|
T Consensus 249 FLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdss------kN~GnA-ILYE~V~TI~~I~~~~~LrvlainiLgkF 321 (866)
T KOG1062|consen 249 FLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSS------KNAGNA-ILYECVRTIMDIRSNSGLRVLAINILGKF 321 (866)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhccccc------ccchhH-HHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 665 4555543 2 234789999999999987 445543 2332 111233345555544
Q ss_pred --------------------------------hhhhhccCchhh-HHHHHHHHHHHHhcccH-hHHHHHHHhhhcccccc
Q 001202 888 --------------------------------LVIAKLEGPAVS-QYSALRLLQATLDECLY-ELAGELVRFLLRSGREY 933 (1124)
Q Consensus 888 --------------------------------ivl~n~e~~~~~-~~~a~~Ll~~al~~~~w-~l~~eL~RFl~~~~~~~ 933 (1124)
-|+.=++.+|++ +..|++|+-+.++..+. .|.+||+-||...|++.
T Consensus 322 L~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~ 401 (866)
T KOG1062|consen 322 LLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDF 401 (866)
T ss_pred hcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHH
Confidence 123334455544 77899999888888666 49999999999987654
Q ss_pred c
Q 001202 934 E 934 (1124)
Q Consensus 934 ~ 934 (1124)
.
T Consensus 402 k 402 (866)
T KOG1062|consen 402 K 402 (866)
T ss_pred H
Confidence 3
No 438
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.78 E-value=6.1e+02 Score=33.97 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=24.7
Q ss_pred CCCCCEEEEEECCCcEEEEEcCCCee
Q 001202 316 TPDNSAFAVGWKSRGLTVWSVSGCRL 341 (1124)
Q Consensus 316 SPDG~~Lasgs~Dg~I~vWdv~~~~l 341 (1124)
+++|..++++..||.+..||+..+.+
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 89999999999999999999999876
No 439
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=46.40 E-value=7e+02 Score=33.72 Aligned_cols=65 Identities=12% Similarity=0.160 Sum_probs=36.4
Q ss_pred EEEEccCCCEEEEEe------------cCCeEEEEEcCCCCcee-------EEEeeccCCCCCCCCCCeEEEEECCCCCE
Q 001202 261 CASIAPEQQILAVGT------------RRGVVELYDLAESASLI-------RTVSLYDWGYSMDDTGPVSCIAWTPDNSA 321 (1124)
Q Consensus 261 ~va~spdg~lLAsGs------------~DgtV~vwd~~~~~~~~-------~~l~~~~~g~~~~h~g~V~~lawSPDG~~ 321 (1124)
.++++++|.+.++-+ .||+|.+..-.. ..|- ..++..+.-.+.+|-....+++.||||..
T Consensus 597 ~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~-S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v 675 (1899)
T KOG4659|consen 597 DIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAK-SPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDV 675 (1899)
T ss_pred ceeecCCceEEEEeccchhhhheEEeccCceEEEecCCC-CCCCcccccCCccccccchhhhccccCCcceEEECCCCcE
Confidence 778888887666543 455555544222 1111 11221111112356677889999999997
Q ss_pred EEEEE
Q 001202 322 FAVGW 326 (1124)
Q Consensus 322 Lasgs 326 (1124)
.++-.
T Consensus 676 ~IAD~ 680 (1899)
T KOG4659|consen 676 IIADS 680 (1899)
T ss_pred EEecC
Confidence 76643
No 440
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=45.62 E-value=6e+02 Score=30.35 Aligned_cols=194 Identities=17% Similarity=0.210 Sum_probs=78.3
Q ss_pred CCEEEEEe-cCCeEEEEEcCCCC---ceeEEEee---cc-CCCCCCCCCCeEEEEECCCCCEEEEEE--C----CCcEEE
Q 001202 268 QQILAVGT-RRGVVELYDLAESA---SLIRTVSL---YD-WGYSMDDTGPVSCIAWTPDNSAFAVGW--K----SRGLTV 333 (1124)
Q Consensus 268 g~lLAsGs-~DgtV~vwd~~~~~---~~~~~l~~---~~-~g~~~~h~g~V~~lawSPDG~~Lasgs--~----Dg~I~v 333 (1124)
.++|...+ .++.|.|.|+.+.. ++.+++.. .. -|++..|+ +.| -|+|..++|+= . -|++.+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT--~Hc---lp~G~imIS~lGd~~G~g~Ggf~l 161 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHT--VHC---LPDGRIMISALGDADGNGPGGFVL 161 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEE--EEE----SS--EEEEEEEETTS-S--EEEE
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCce--eee---cCCccEEEEeccCCCCCCCCcEEE
Confidence 44555544 78899999998533 23333331 11 12222233 333 47998888752 2 246777
Q ss_pred EEcCCCeeeEEeccCC--cCceeeeEEcCCCCCCcceEE-----------------------EeeeEEEEeCCCCeEEEE
Q 001202 334 WSVSGCRLMSTIRQIS--LSSISSPIVKPNQDCKYEPLM-----------------------SGTSMMQWDEYGYRLYAI 388 (1124)
Q Consensus 334 Wdv~~~~l~~tl~~h~--~~~V~s~~~sp~~~~~~~~l~-----------------------sg~~i~~W~~~~~~l~~~ 388 (1124)
.|-.+-.....-.... ...-...-+.|.. +.++ -|.++.+|+....++..+
T Consensus 162 lD~~tf~v~g~We~~~~~~~~gYDfw~qpr~----nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~ 237 (461)
T PF05694_consen 162 LDGETFEVKGRWEKDRGPQPFGYDFWYQPRH----NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQT 237 (461)
T ss_dssp E-TTT--EEEE--SB-TT------EEEETTT----TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEE
T ss_pred EcCccccccceeccCCCCCCCCCCeEEcCCC----CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeE
Confidence 7766554443332210 1111222223322 1111 133888999999999887
Q ss_pred ecCCc-ceE-EEEec----cc-eEEeeccCCceeeeEeeecCCeEEEeecCCCccceee---ecccceee----------
Q 001202 389 EEGSS-ERV-LIFSF----GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL---HLNLPVSY---------- 448 (1124)
Q Consensus 389 ~~~~~-~~v-~~~s~----~k-~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~---~~~~p~~~---------- 448 (1124)
..-.. ..+ +.+.| .+ .-.+++. -+..+|.+-..++ -.|+ .+++|..-
T Consensus 238 idLg~~g~~pLEvRflH~P~~~~gFvg~a-Lss~i~~~~k~~~------------g~W~a~kVi~ip~~~v~~~~lp~ml 304 (461)
T PF05694_consen 238 IDLGEEGQMPLEVRFLHDPDANYGFVGCA-LSSSIWRFYKDDD------------GEWAAEKVIDIPAKKVEGWILPEML 304 (461)
T ss_dssp EES-TTEEEEEEEEE-SSTT--EEEEEEE---EEEEEEEE-ET------------TEEEEEEEEEE--EE--SS---GGG
T ss_pred EecCCCCCceEEEEecCCCCccceEEEEe-ccceEEEEEEcCC------------CCeeeeEEEECCCcccCcccccccc
Confidence 65332 322 44444 12 2222222 2334444333211 1232 22333211
Q ss_pred ---ccCCCceEEEEEccCCCEEEEEc-CCCeE-EEEcCCC
Q 001202 449 ---ISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDIRQK 483 (1124)
Q Consensus 449 ---~~~~~~I~~va~SpdG~~lAvag-~dG~v-lwd~~sg 483 (1124)
..-..-|+.+.+|.|.++|.+++ -+|.+ .||+...
T Consensus 305 ~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 305 KPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp GGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 11123378899999999998776 57888 9998753
No 441
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=45.52 E-value=6.4e+02 Score=30.67 Aligned_cols=75 Identities=11% Similarity=-0.035 Sum_probs=42.0
Q ss_pred CEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeE--EEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEec
Q 001202 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS--CIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1124)
Q Consensus 269 ~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~--~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~ 346 (1124)
..+.+++.||.|.-.|..+ ++.+-+....... ..+...+. .++.. ++..+..++.|+.|.-.|..+++.+....
T Consensus 62 g~vy~~~~~g~l~AlD~~t-G~~~W~~~~~~~~--~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 62 GDMYFTTSHSALFALDAAT-GKVLWRYDPKLPA--DRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CEEEEeCCCCcEEEEECCC-ChhhceeCCCCCc--cccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 3455566778888888776 5444333211100 00000110 01111 23577778889999999999998887765
Q ss_pred c
Q 001202 347 Q 347 (1124)
Q Consensus 347 ~ 347 (1124)
.
T Consensus 138 ~ 138 (488)
T cd00216 138 N 138 (488)
T ss_pred C
Confidence 4
No 442
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=43.50 E-value=7.8e+02 Score=31.97 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=59.6
Q ss_pred EEEEEccC-CCEEEEEecCCeEEEEEcCCCC-ceeEE--EeeccCCCC---CCCCCCeEEEEECCCCCEEEEEECCCcEE
Q 001202 260 VCASIAPE-QQILAVGTRRGVVELYDLAESA-SLIRT--VSLYDWGYS---MDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1124)
Q Consensus 260 v~va~spd-g~lLAsGs~DgtV~vwd~~~~~-~~~~~--l~~~~~g~~---~~h~g~V~~lawSPDG~~Lasgs~Dg~I~ 332 (1124)
+.|+|||. .+.+|+-...|...||++.... ..... +.....|.. .+....-..+.|.++-..|.++.. ..+.
T Consensus 149 aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~ 227 (765)
T PF10214_consen 149 ADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLM 227 (765)
T ss_pred ceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceE
Confidence 38999994 5689999999999999993211 10111 111111211 112233457899999888888877 5788
Q ss_pred EEEcCCCeeeEEecc-CCcCceeeeEEcCC
Q 001202 333 VWSVSGCRLMSTIRQ-ISLSSISSPIVKPN 361 (1124)
Q Consensus 333 vWdv~~~~l~~tl~~-h~~~~V~s~~~sp~ 361 (1124)
+.|+.+......+.. ...+.+..+.-+|.
T Consensus 228 ~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 228 LIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred EEECCCCCccchhccCCChhheeeEEecCC
Confidence 999987653221211 11344555555554
No 443
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=43.08 E-value=7.3e+02 Score=30.61 Aligned_cols=70 Identities=13% Similarity=0.063 Sum_probs=41.3
Q ss_pred CEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECC---CCCEEEEEE------CCCcEEEEEcCCC
Q 001202 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP---DNSAFAVGW------KSRGLTVWSVSGC 339 (1124)
Q Consensus 269 ~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP---DG~~Lasgs------~Dg~I~vWdv~~~ 339 (1124)
..+.+++.||.+.-.|..+ ++.+-.....+ +... ..+.-+| +|. ++++. .+|.|.-.|..+|
T Consensus 121 ~~v~v~t~dg~l~ALDa~T-Gk~~W~~~~~~------~~~~-~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG 191 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKT-GKVVWSKKNGD------YKAG-YTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTG 191 (527)
T ss_pred CEEEEEcCCCEEEEEECCC-CCEEeeccccc------cccc-ccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCC
Confidence 4566788899999999887 66554333211 1100 0111122 454 44443 2688999999999
Q ss_pred eeeEEecc
Q 001202 340 RLMSTIRQ 347 (1124)
Q Consensus 340 ~l~~tl~~ 347 (1124)
+.+.+...
T Consensus 192 ~~lW~~~~ 199 (527)
T TIGR03075 192 KLVWRRYT 199 (527)
T ss_pred ceeEeccC
Confidence 88776543
No 444
>PHA02713 hypothetical protein; Provisional
Probab=41.70 E-value=7.8e+02 Score=30.57 Aligned_cols=63 Identities=11% Similarity=0.162 Sum_probs=38.4
Q ss_pred ccCCCEEEEEcCCC------eE-EEEcCC-CcEEEecCcCceeeeEEEEEEe-cCCEEEEEEEecCCCeEEEEEeeC
Q 001202 461 SKDGMFLAVAGLHG------LI-LYDIRQ-KKWRVFGDITQEQKIQSKGLLW-LGKIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 461 SpdG~~lAvag~dG------~v-lwd~~s-g~wk~f~~~~~e~~~~v~gl~W-~~~~liv~~~~~~~~~~elrly~~ 528 (1124)
.-+|+..++||.++ .+ .||..+ ++|.......... ...+++- .+.+.++|+++. ...+.+|+.
T Consensus 461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r--~~~~~~~~~~~iyv~Gg~~~---~~~~e~yd~ 532 (557)
T PHA02713 461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL--SALHTILHDNTIMMLHCYES---YMLQDTFNV 532 (557)
T ss_pred EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc--ccceeEEECCEEEEEeeecc---eeehhhcCc
Confidence 44788888888652 46 899999 8999876554433 2234433 445556776632 224455655
No 445
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=41.53 E-value=84 Score=39.92 Aligned_cols=76 Identities=16% Similarity=0.340 Sum_probs=43.4
Q ss_pred EEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCC-CCeEEEEECCC-------CC--EEEEE-ECCCcE
Q 001202 263 SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT-GPVSCIAWTPD-------NS--AFAVG-WKSRGL 331 (1124)
Q Consensus 263 a~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~-g~V~~lawSPD-------G~--~Lasg-s~Dg~I 331 (1124)
.+||||..+|.++.||.|+.|.+.-.++..+.. ++.|. .|+ ++-.|.-+... |. +++++ ..++.+
T Consensus 242 ~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rc-lhewk---phd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~ 317 (1283)
T KOG1916|consen 242 SLSPDGTVFAWAISDGSVGFYQIYITGKIVHRC-LHEWK---PHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREE 317 (1283)
T ss_pred eeCCCCcEEEEeecCCccceeeeeeeccccHhh-hhccC---CCCCCCceeeeeccccccCCccceeEEEEecccCCcce
Confidence 589999999999999999999876433322211 11221 255 33222222211 22 33444 345788
Q ss_pred EEEEcCCCeee
Q 001202 332 TVWSVSGCRLM 342 (1124)
Q Consensus 332 ~vWdv~~~~l~ 342 (1124)
++|....-+|.
T Consensus 318 k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 318 KFWAEAPWQCL 328 (1283)
T ss_pred eEeeccchhhh
Confidence 89987654443
No 446
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=39.36 E-value=3.9e+02 Score=26.43 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=41.5
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECC----CCCEEEEEECCCcEEEEEcCCCeee
Q 001202 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP----DNSAFAVGWKSRGLTVWSVSGCRLM 342 (1124)
Q Consensus 267 dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP----DG~~Lasgs~Dg~I~vWdv~~~~l~ 342 (1124)
+...|..|+.. .+..||+.. ...+..-. -...|+++.+-. +...+++|+ +..|.-+|..|.+..
T Consensus 63 ~~D~LliGt~t-~llaYDV~~-N~d~Fyke---------~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 63 GRDCLLIGTQT-SLLAYDVEN-NSDLFYKE---------VPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIF 130 (136)
T ss_pred CcCEEEEeccc-eEEEEEccc-Cchhhhhh---------CccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEE
Confidence 35678888654 788999987 33222111 234577777632 233445544 467888888887776
Q ss_pred EEec
Q 001202 343 STIR 346 (1124)
Q Consensus 343 ~tl~ 346 (1124)
.+..
T Consensus 131 WtVt 134 (136)
T PF14781_consen 131 WTVT 134 (136)
T ss_pred EEec
Confidence 6653
No 447
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=38.71 E-value=1.3e+02 Score=32.37 Aligned_cols=74 Identities=11% Similarity=0.146 Sum_probs=45.0
Q ss_pred ceEEEEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHH---------hhhcceeEEEEecCCcEEEEEeCCCeE
Q 001202 22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESV---------QREGENLQAVWSPDTKLIAVVTSSLYL 91 (1124)
Q Consensus 22 ~~iv~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl---------~~~G~~~~v~wSPDg~~Lav~t~dg~l 91 (1124)
.+++.+..+|.++.+++ ++.+++||+.+....+.. -+...+ .....+..+..+.+|.-|++- ++|..
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~--~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~ 89 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPP--VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDS 89 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCC--ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCE
Confidence 57777888888777666 578999999632221111 011111 123445677888888766554 45677
Q ss_pred EEEEeee
Q 001202 92 HIFKVQI 98 (1124)
Q Consensus 92 ~i~~v~~ 98 (1124)
..|+.+-
T Consensus 90 y~y~~~L 96 (219)
T PF07569_consen 90 YSYSPDL 96 (219)
T ss_pred EEecccc
Confidence 7777653
No 448
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=38.61 E-value=6.6e+02 Score=28.81 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=42.4
Q ss_pred CCCeEEEEEcc-------CCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC
Q 001202 256 SGDAVCASIAP-------EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (1124)
Q Consensus 256 h~~~v~va~sp-------dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D 328 (1124)
|..+..+.|.. +|.+++.....+.|....++..++....-.+. + +..+++..|++.|||...++-..+
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~---~~~~r~~~v~~~pDG~Lyv~~d~~ 326 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL--G---GFGGRPRDVAQGPDGALYVSDDSD 326 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC--T---TSSS-EEEEEEETTSEEEEEE-TT
T ss_pred ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc--c---cCCCCceEEEEcCCCeEEEEECCC
Confidence 44444666653 45677776667788877776533322221211 1 144589999999999988888888
Q ss_pred CcE
Q 001202 329 RGL 331 (1124)
Q Consensus 329 g~I 331 (1124)
|.|
T Consensus 327 G~i 329 (331)
T PF07995_consen 327 GKI 329 (331)
T ss_dssp TTE
T ss_pred CeE
Confidence 776
No 449
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=37.97 E-value=6.4e+02 Score=32.34 Aligned_cols=114 Identities=18% Similarity=0.280 Sum_probs=59.7
Q ss_pred EEEEecCCcEEEEEecCCc-eEeeecc---ccceecC-CCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEE-
Q 001202 223 LFVLYSNGQLMSCSVSKKG-LKLAEFI---KIDKELG-SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTV- 295 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~-i~~wd~~---~~~~~~g-h~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l- 295 (1124)
.+..+.-|+++++|-..|. +-.-|.. -+++..| ..+.+ +++++.+..++.+ .+|.|.-|.++...+ +...
T Consensus 189 Svfl~~kgqvY~cGhG~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT--~~g~Vys~GlN~~hq-LG~~~ 265 (1267)
T KOG0783|consen 189 SVFLTEKGQVYVCGHGAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLT--KFGSVYSWGLNGSHQ-LGLSN 265 (1267)
T ss_pred eeEecCCCcEEEeccCCCCccCcCcccccccccccccccccceEEEEeecceeEEEe--ecceEEEeecCcccc-cCCcC
Confidence 4555677888887764332 2111111 1222233 33456 9999999988776 689999998876221 1000
Q ss_pred ---eeccC-CCCC-CCCC--CeEEEEECCCCCEEEEEECCCcEEEEEcCCCeee
Q 001202 296 ---SLYDW-GYSM-DDTG--PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM 342 (1124)
Q Consensus 296 ---~~~~~-g~~~-~h~g--~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~ 342 (1124)
+..+. ...+ --+| .+..|+ -|+.--++|.|..|..|-+++|++-
T Consensus 266 ~~~~~~~p~qI~a~r~kg~~~iIgva---Ag~~hsVawt~~~VY~wGlN~GQlG 316 (1267)
T KOG0783|consen 266 DELKKDDPIQITARRIKGFKQIIGVA---AGKSHSVAWTDTDVYSWGLNNGQLG 316 (1267)
T ss_pred chhhcCchhhhhhHhhcchhhhhhhh---cccceeeeeecceEEEecccCceec
Confidence 00000 0000 0001 111111 2444455677888999999998853
No 450
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=37.31 E-value=6.2e+02 Score=28.12 Aligned_cols=190 Identities=13% Similarity=0.123 Sum_probs=99.4
Q ss_pred CeE-EEEEccCCCEEEEEecCC--eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEE
Q 001202 258 DAV-CASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (1124)
Q Consensus 258 ~~v-~va~spdg~lLAsGs~Dg--tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vW 334 (1124)
.-+ .+.|.++|.++-+.+.-| .|+.+|+++ ++......+... . ---.++.- +++...-.|.++...+|
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t-g~~~~~~~l~~~-----~--FgEGit~~-~d~l~qLTWk~~~~f~y 115 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLET-GKVLQSVPLPPR-----Y--FGEGITIL-GDKLYQLTWKEGTGFVY 115 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTT-SSEEEEEE-TTT---------EEEEEEE-TTEEEEEESSSSEEEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCC-CcEEEEEECCcc-----c--cceeEEEE-CCEEEEEEecCCeEEEE
Confidence 345 788888888888888777 788899887 766665554321 1 11223332 45666778899999999
Q ss_pred EcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEE-ee-eEEEEeCCCCeEEEEecC--CcceE---EEEeccceEEe
Q 001202 335 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS-GT-SMMQWDEYGYRLYAIEEG--SSERV---LIFSFGKCCLN 407 (1124)
Q Consensus 335 dv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~s-g~-~i~~W~~~~~~l~~~~~~--~~~~v---~~~s~~k~~~s 407 (1124)
|..+-+.+.++.-.+ .=+.++ .++ ...++| |+ .+..+|+++.+......- ....+ -.+.+
T Consensus 116 d~~tl~~~~~~~y~~--EGWGLt--~dg---~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~------ 182 (264)
T PF05096_consen 116 DPNTLKKIGTFPYPG--EGWGLT--SDG---KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY------ 182 (264)
T ss_dssp ETTTTEEEEEEE-SS--S--EEE--ECS---SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE------
T ss_pred ccccceEEEEEecCC--cceEEE--cCC---CEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE------
Confidence 999988888775432 223444 233 155666 44 777888887765443211 11111 11222
Q ss_pred eccCCceeeeEeeecCCeEEEeecCCCccceeeecc-------cceeeccCCCceEEEEEccCCCEEEEEcCC
Q 001202 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN-------LPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (1124)
Q Consensus 408 ~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~-------~p~~~~~~~~~I~~va~SpdG~~lAvag~d 473 (1124)
.+|. +|.-....+.|.........-..|-.+. ..........-.+.+|++|.++.+.+.|+.
T Consensus 183 --i~G~--IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 183 --INGK--IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp --ETTE--EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred --EcCE--EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 0222 2222223455554444332222221110 000111124567899999988888777743
No 451
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=35.55 E-value=1.1e+02 Score=32.65 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=34.0
Q ss_pred ecCCeEEEEEcCCC-CceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC
Q 001202 275 TRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (1124)
Q Consensus 275 s~DgtV~vwd~~~~-~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D 328 (1124)
...+.|.+|++... .....+++ .-|.|..+.++.-|.+|+|-=++
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~---------Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFS---------TVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEc---------chhheeEEEeccccceEEEEEee
Confidence 55678999999842 34455555 46889999999999999986543
No 452
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=35.39 E-value=1.2e+03 Score=30.91 Aligned_cols=49 Identities=10% Similarity=0.109 Sum_probs=35.3
Q ss_pred EEEeeCC-CCCCcceEEEeecCCccEEEEeeCCEEEEEEcCCeEEEEEEEE
Q 001202 523 LLFYPRY-HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL 572 (1124)
Q Consensus 523 lrly~~~-~ld~~~~l~~~~l~s~~l~l~~~~~~llv~~~d~~i~l~~~~~ 572 (1124)
+..|... +-+.-.+++..+.+.++.++-+++++++++.. ..+++|++-.
T Consensus 914 ~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~LagvG-~~l~~YdlG~ 963 (1205)
T KOG1898|consen 914 VYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGVG-RFLRLYDLGK 963 (1205)
T ss_pred eEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEecc-cEEEEeeCCh
Confidence 4445443 22233588999999999999999999888543 4788888754
No 453
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=34.35 E-value=6.3e+02 Score=28.89 Aligned_cols=118 Identities=12% Similarity=0.149 Sum_probs=62.1
Q ss_pred ceEEEEEecCCcceEEEEecCCc------EEEEEecC-----CceEeeecc-----ccceec-CCCCeEEEEEccCCCEE
Q 001202 209 SAIIWLELCLPMRLLFVLYSNGQ------LMSCSVSK-----KGLKLAEFI-----KIDKEL-GSGDAVCASIAPEQQIL 271 (1124)
Q Consensus 209 ~~I~~i~~s~~~~~~~~~s~dG~------~~~~~~~d-----~~i~~wd~~-----~~~~~~-gh~~~v~va~spdg~lL 271 (1124)
+.+..|.|.+..+.+.+++.+|. ++-..... ..+..-+.. .+..+. ..-|.=.+++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 34556777766667777777777 43322211 111111110 011110 01133367777888877
Q ss_pred EEEecC------CeEEEEEcCCCCceeEEEeeccCC-------CCCCCCCCeEEEEECCCCCEEEEEECC
Q 001202 272 AVGTRR------GVVELYDLAESASLIRTVSLYDWG-------YSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (1124)
Q Consensus 272 AsGs~D------gtV~vwd~~~~~~~~~~l~~~~~g-------~~~~h~g~V~~lawSPDG~~Lasgs~D 328 (1124)
++-=.+ ..|.-++.+ +.....+.+...- .........-.|+++|||+.|.++-+.
T Consensus 100 is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence 765555 566666644 5555544332210 011245668899999999977776553
No 454
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.33 E-value=7.5e+02 Score=27.91 Aligned_cols=129 Identities=20% Similarity=0.291 Sum_probs=79.0
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEE
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~ 332 (1124)
.|.+.-+ ++.|||+.+.|.+-.....--|+ +++.|..++++.+.-.. . --.|.|.-+|++.++--.++.+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVE-lt~~GdlirtiPL~g~~----D---pE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVE-LTKEGDLIRTIPLTGFS----D---PETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEE-EecCCceEEEecccccC----C---hhHeEEecCCEEEEEehhcceEE
Confidence 4545557 99999998876665555554454 45558899988754221 1 24578888998888888889999
Q ss_pred EEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEec
Q 001202 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF 401 (1124)
Q Consensus 333 vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~ 401 (1124)
+..+........+.. ..+.-....+. -.|-.-..|++.+..++..-.-....|+...-
T Consensus 154 ~~~vd~~t~~~~~~~--------~~i~L~~~~k~---N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 154 LFTVDADTTVISAKV--------QKIPLGTTNKK---NKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred EEEEcCCccEEeccc--------eEEeccccCCC---CcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 988865532222211 01111100000 11224467999999998887665666666553
No 455
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=33.30 E-value=2.4e+02 Score=33.25 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=24.7
Q ss_pred ceeEEEEecCCcEEEEEeCCCeEEEEEeeec
Q 001202 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1124)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~ 99 (1124)
.+..+...|||+.+.+-+. +.+.+|++...
T Consensus 222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r 251 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKR 251 (733)
T ss_pred chHhhEECCCCCEEEEecC-CeEEEEeeccc
Confidence 3456788999999999887 78999999754
No 456
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=33.11 E-value=7.7e+02 Score=27.99 Aligned_cols=118 Identities=11% Similarity=0.170 Sum_probs=59.4
Q ss_pred CeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEc
Q 001202 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1124)
Q Consensus 258 ~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv 336 (1124)
..+ .+..++||+++|++..-....-|+-.. ....... .. ....|..+.|+|||...+.+ ..|.|+.=+.
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~--~~w~~~~---r~----~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQ--TTWQPHN---RN----SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE---------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCC--ccceEEc---cC----ccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence 455 778899999999997665666776432 1122111 01 45779999999998876655 6666666551
Q ss_pred -CCCeeeEE--ecc-CCcCceeeeEEcCCCCCCcceEEEee-eEEEEeCCCCeEEEEe
Q 001202 337 -SGCRLMST--IRQ-ISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIE 389 (1124)
Q Consensus 337 -~~~~l~~t--l~~-h~~~~V~s~~~sp~~~~~~~~l~sg~-~i~~W~~~~~~l~~~~ 389 (1124)
........ ... ...-.+.++++.++. +..++|. -.++-+.++++-|...
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~----~~wa~gg~G~l~~S~DgGktW~~~ 268 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPN----EIWAVGGSGTLLVSTDGGKTWQKD 268 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS-----EEEEESTT-EEEESSTTSS-EE-
T ss_pred CCCccccccccCCcccCceeeEEEEecCCC----CEEEEeCCccEEEeCCCCccceEC
Confidence 21111111 110 011236777887776 6666655 4455566666666654
No 457
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=32.97 E-value=1.5e+02 Score=36.60 Aligned_cols=35 Identities=11% Similarity=0.306 Sum_probs=28.0
Q ss_pred EEEEcc----CCCEEEEEecCCeEEEEEcCCCCceeEEEe
Q 001202 261 CASIAP----EQQILAVGTRRGVVELYDLAESASLIRTVS 296 (1124)
Q Consensus 261 ~va~sp----dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~ 296 (1124)
.+++++ +..++++-+.|+++|+||+.+ +.++.+..
T Consensus 219 ~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t-~~~~~~~~ 257 (547)
T PF11715_consen 219 SLAVSSSEINDDTFLFTLSRDHTLRIWSLET-GQCLATID 257 (547)
T ss_dssp EEEE-----ETTTEEEEEETTSEEEEEETTT-TCEEEEEE
T ss_pred eEEEecceeCCCCEEEEEeCCCeEEEEECCC-CeEEEEec
Confidence 666766 678999999999999999998 77777665
No 458
>PHA02790 Kelch-like protein; Provisional
Probab=32.29 E-value=9.9e+02 Score=28.99 Aligned_cols=27 Identities=26% Similarity=0.648 Sum_probs=21.8
Q ss_pred cCCCEEEEEcCC-----CeE-EEEcCCCcEEEe
Q 001202 462 KDGMFLAVAGLH-----GLI-LYDIRQKKWRVF 488 (1124)
Q Consensus 462 pdG~~lAvag~d-----G~v-lwd~~sg~wk~f 488 (1124)
-+|+..++||.+ ..+ .||..+++|...
T Consensus 445 ~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 445 VDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred ECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 388899999865 357 999999999764
No 459
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=31.64 E-value=3.7e+02 Score=30.19 Aligned_cols=95 Identities=19% Similarity=0.191 Sum_probs=53.7
Q ss_pred CeEEEEcCCCcEEEecCcCceeeeEEEEEEec-CCEEEEEEE-ecCC-CeEEEEEeeCCCCCCcceEE--EeecCCccEE
Q 001202 474 GLILYDIRQKKWRVFGDITQEQKIQSKGLLWL-GKIIVVCNY-IDSS-NTYELLFYPRYHLDQSSLLC--RKSLLAKPIV 548 (1124)
Q Consensus 474 G~vlwd~~sg~wk~f~~~~~e~~~~v~gl~W~-~~~liv~~~-~~~~-~~~elrly~~~~ld~~~~l~--~~~l~s~~l~ 548 (1124)
+..+||..+.+|..+++. -.-.|..+.|. ++.+++++. ...+ ....+..|+.+.-.=..+.. ...+|.++..
T Consensus 17 ~lC~yd~~~~qW~~~g~~---i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNG---ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred EEEEEECCCCEeecCCCC---ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 444999999999999875 22468899996 666666554 3333 45667788774110000111 0235555444
Q ss_pred EEe---eCCEEEE-E-EcCCeEEEEEEE
Q 001202 549 MDV---YEDYILV-T-YRPFDVHIFHVK 571 (1124)
Q Consensus 549 l~~---~~~~llv-~-~~d~~i~l~~~~ 571 (1124)
+.. ..+.+.+ . ..++...|++|.
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEc
Confidence 433 3334443 2 256666677663
No 460
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=31.18 E-value=1.6e+02 Score=24.17 Aligned_cols=59 Identities=14% Similarity=0.011 Sum_probs=46.7
Q ss_pred HHHHhcCcHHHHhhHHhhhhhccCchhhHHHHHHHHHHHHhcccHhHHHHHHHhhhccccc
Q 001202 872 EECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLLRSGRE 932 (1124)
Q Consensus 872 ~~cl~~~~l~taa~yLivl~n~e~~~~~~~~a~~Ll~~al~~~~w~l~~eL~RFl~~~~~~ 932 (1124)
...++.|+++.|..++--+....+. .......|.......++|+-|.+..+=+..++|.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3467899999999999877776655 4666778888889999999999998877777765
No 461
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=31.14 E-value=9.2e+02 Score=29.13 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=38.5
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCC
Q 001202 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN 319 (1124)
Q Consensus 255 gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG 319 (1124)
+-..+..++|.|||+++++--..|.|++++-.. +.......+... ......+....|+++||-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~-~~~~~~~~l~~v-~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPET-GEVKVVFTLPEI-VNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCC-CceeeeecCCce-eccCCCCceeeEEECCCc
Confidence 345566899999999887765579999987543 221111111100 000125678999999984
No 462
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=31.06 E-value=3e+02 Score=34.96 Aligned_cols=73 Identities=11% Similarity=0.146 Sum_probs=50.4
Q ss_pred CeE-EEEEc--cCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCC-----CC-EEEEEECC
Q 001202 258 DAV-CASIA--PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-----NS-AFAVGWKS 328 (1124)
Q Consensus 258 ~~v-~va~s--pdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPD-----G~-~Lasgs~D 328 (1124)
..+ .++++ ...++||+++....|-||-........ .... +..|..-|-+|+|-++ |. .+++++-.
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~--~~~~----s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~ 237 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERF--YHVP----SHQHSHNIPNVSFLDDDLDPNGHVKVVATDIS 237 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEecccccc--cccc----ccccccCCCeeEeecCCCCCccceEEEEEecc
Confidence 455 88998 889999999999999998876521110 0100 1114555889999764 33 78888889
Q ss_pred CcEEEEEc
Q 001202 329 RGLTVWSV 336 (1124)
Q Consensus 329 g~I~vWdv 336 (1124)
|.+.+|++
T Consensus 238 G~v~~~~I 245 (717)
T PF08728_consen 238 GEVWTFKI 245 (717)
T ss_pred CcEEEEEE
Confidence 99998887
No 463
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=30.18 E-value=2.8e+02 Score=30.01 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=37.5
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEEC
Q 001202 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT 316 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawS 316 (1124)
.+++..+|.+.++....|+|...|..+ ++.+.++++ .+..|+|++|-
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~eikl--------Pt~qitsccFg 262 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLEIKL--------PTPQITSCCFG 262 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCC-CcEEEEEEc--------CCCceEEEEec
Confidence 344466888888888899999999988 888888874 35669999995
No 464
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=29.54 E-value=1.3e+02 Score=22.24 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=23.1
Q ss_pred CCCCEEEEEE-CCCcEEEEEcCCCeeeEEecc
Q 001202 317 PDNSAFAVGW-KSRGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 317 PDG~~Lasgs-~Dg~I~vWdv~~~~l~~tl~~ 347 (1124)
|||+.|.++. .++.|.++|..++..+.++.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 6888666655 578999999988877666543
No 465
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=29.20 E-value=1e+03 Score=28.19 Aligned_cols=113 Identities=11% Similarity=0.140 Sum_probs=65.4
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCCCce-eEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001202 261 CASIAPEQQILAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~DgtV~vwd~~~~~~~-~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~ 339 (1124)
.+..++++.++++|..-...+-|+- +.. ...... + ....+..+.|.+||..++++ .+|+ .+|+...+
T Consensus 243 ~v~~~~dG~~~~vg~~G~~~~s~d~---G~~~W~~~~~---~----~~~~l~~v~~~~dg~l~l~g-~~G~-l~~S~d~G 310 (398)
T PLN00033 243 TVNRSPDGDYVAVSSRGNFYLTWEP---GQPYWQPHNR---A----SARRIQNMGWRADGGLWLLT-RGGG-LYVSKGTG 310 (398)
T ss_pred eEEEcCCCCEEEEECCccEEEecCC---CCcceEEecC---C----CccceeeeeEcCCCCEEEEe-CCce-EEEecCCC
Confidence 5667889988888864433333432 322 122221 1 34568999999999988766 4454 45666655
Q ss_pred ee-----eEEeccC-CcCceeeeEEcCCCCCCcceEEEee-eEEEEeCCCCeEEEEe
Q 001202 340 RL-----MSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIE 389 (1124)
Q Consensus 340 ~l-----~~tl~~h-~~~~V~s~~~sp~~~~~~~~l~sg~-~i~~W~~~~~~l~~~~ 389 (1124)
+. +..+... ....+.++.+.+++ ..++.|. -.+....++++-|...
T Consensus 311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~----~~~a~G~~G~v~~s~D~G~tW~~~ 363 (398)
T PLN00033 311 LTEEDFDFEEADIKSRGFGILDVGYRSKK----EAWAAGGSGILLRSTDGGKSWKRD 363 (398)
T ss_pred CcccccceeecccCCCCcceEEEEEcCCC----cEEEEECCCcEEEeCCCCcceeEc
Confidence 42 2222211 12347778887776 6777665 3444455666666554
No 466
>PF13964 Kelch_6: Kelch motif
Probab=28.61 E-value=80 Score=24.85 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=24.2
Q ss_pred EEccCCCEEEEEcCCC------eE-EEEcCCCcEEEecC
Q 001202 459 AASKDGMFLAVAGLHG------LI-LYDIRQKKWRVFGD 490 (1124)
Q Consensus 459 a~SpdG~~lAvag~dG------~v-lwd~~sg~wk~f~~ 490 (1124)
+..-+|+..+.||.++ .+ +||+.+++|.....
T Consensus 7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 45 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP 45 (50)
T ss_pred EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC
Confidence 3445778888888766 45 99999999997654
No 467
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=28.44 E-value=8.5e+02 Score=27.05 Aligned_cols=108 Identities=15% Similarity=0.101 Sum_probs=65.2
Q ss_pred EecCCcEEEEEecCC--ceEeeecccccee----cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeec
Q 001202 226 LYSNGQLMSCSVSKK--GLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1124)
Q Consensus 226 ~s~dG~~~~~~~~d~--~i~~wd~~~~~~~----~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~ 298 (1124)
+..||.++-+++.-+ .++.+|..+++.. ....--- .+++- +.++...-..+|+..+||.++ -+.+.++..
T Consensus 52 ~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~t-l~~~~~~~y- 128 (264)
T PF05096_consen 52 FLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNT-LKKIGTFPY- 128 (264)
T ss_dssp EEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTT-TEEEEEEE--
T ss_pred ecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEcccc-ceEEEEEec-
Confidence 336788777766443 5677777766533 1111111 33333 345666778999999999987 666777662
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEec
Q 001202 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1124)
Q Consensus 299 ~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~ 346 (1124)
.+.=+.++ .||+.|........+..+|..+-+...++.
T Consensus 129 --------~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 129 --------PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp --------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred --------CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEE
Confidence 22334555 688888877777799999988766655553
No 468
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=26.83 E-value=9.8e+02 Score=27.18 Aligned_cols=250 Identities=16% Similarity=0.151 Sum_probs=97.3
Q ss_pred CCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccceecCCCCeE-EEEEccCCCEEEEEecCCeEEEEE
Q 001202 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYD 284 (1124)
Q Consensus 206 ~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd 284 (1124)
+....+.+|.|.......++ -..|.++-+.-...+ |.......-..-.-.. +++|+.+ ...++| ..|. .+..
T Consensus 14 ~t~~~l~dV~F~d~~~G~~V-G~~g~il~T~DGG~t---W~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g~-ll~T 86 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNHGWAV-GAYGTILKTTDGGKT---WQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPGL-LLHT 86 (302)
T ss_dssp S-SS-EEEEEESSSS-EEEE-ETTTEEEEESSTTSS----EE-----S-----EEEEEEEETT-EEEEEE-ETTE-EEEE
T ss_pred CCCCceEEEEEecCCEEEEE-ecCCEEEEECCCCcc---ccccccCCCccceeeEEEEEecCC-ceEEEc-CCce-EEEe
Confidence 34557888888855544444 456655543222222 3322211000001123 6777654 345555 4554 2333
Q ss_pred cCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCC
Q 001202 285 LAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC 364 (1124)
Q Consensus 285 ~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~ 364 (1124)
.+. +.....+.+.. . -.+....+....++...+++ ..|.| .-+..+++.-..+.......+..+..++++
T Consensus 87 ~Dg-G~tW~~v~l~~-~----lpgs~~~i~~l~~~~~~l~~-~~G~i-y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG-- 156 (302)
T PF14870_consen 87 TDG-GKTWERVPLSS-K----LPGSPFGITALGDGSAELAG-DRGAI-YRTTDGGKTWQAVVSETSGSINDITRSSDG-- 156 (302)
T ss_dssp SST-TSS-EE----T-T-----SS-EEEEEEEETTEEEEEE-TT--E-EEESSTTSSEEEEE-S----EEEEEE-TTS--
T ss_pred cCC-CCCcEEeecCC-C----CCCCeeEEEEcCCCcEEEEc-CCCcE-EEeCCCCCCeeEcccCCcceeEeEEECCCC--
Confidence 333 65555544221 1 12334444444555444443 33433 233444443333322223456777777777
Q ss_pred CcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeee
Q 001202 365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (1124)
Q Consensus 365 ~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~ 441 (1124)
.+++.+. -.+.|++....-.........+|-.+.| +....+|-+..+.. +.... .......|..
T Consensus 157 --~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf---------~~~~~lw~~~~Gg~-~~~s~-~~~~~~~w~~ 223 (302)
T PF14870_consen 157 --RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGF---------SPDGNLWMLARGGQ-IQFSD-DPDDGETWSE 223 (302)
T ss_dssp ---EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE----------TTS-EEEEETTTE-EEEEE--TTEEEEE--
T ss_pred --cEEEEECcccEEEEecCCCccceEEccCccceehhcee---------cCCCCEEEEeCCcE-EEEcc-CCCCcccccc
Confidence 6665433 4456665432111111222334433322 22234455443332 32222 1111123443
Q ss_pred cccceeeccCCCceEEEEEccCCCEEEEEcCCCeEEEEcCCCc-EEEe
Q 001202 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKK-WRVF 488 (1124)
Q Consensus 442 ~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~vlwd~~sg~-wk~f 488 (1124)
-..|. ....+-+..+++.+++...|+|| .|.++++...|+ |+.-
T Consensus 224 ~~~~~--~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~S~DgGktW~~~ 268 (302)
T PF14870_consen 224 PIIPI--KTNGYGILDLAYRPPNEIWAVGG-SGTLLVSTDGGKTWQKD 268 (302)
T ss_dssp -B-TT--SS--S-EEEEEESSSS-EEEEES-TT-EEEESSTTSS-EE-
T ss_pred ccCCc--ccCceeeEEEEecCCCCEEEEeC-CccEEEeCCCCccceEC
Confidence 22232 12234488899999988777555 667778887764 7653
No 469
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.42 E-value=1e+03 Score=31.99 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=32.8
Q ss_pred eeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEe
Q 001202 447 SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (1124)
Q Consensus 447 ~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f 488 (1124)
.+..+++++.....+++|..++++-.||.. .||...++-+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~~~~ 271 (993)
T KOG1983|consen 229 KYVQSAYLPNGQLESRDGSHFVSYHTDGSYAFWDVSSGKLQIA 271 (993)
T ss_pred ccchhhcccccccCccCCceEEEEEecCCEEeeecCCCceeec
Confidence 445566666655569999999999999999 999999865443
No 470
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=26.21 E-value=3.3e+02 Score=26.27 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=48.0
Q ss_pred hhHHHHHHHhHcC---chhHHHHHhhcccccccchHHHHhhcCChHHHHHHHHhcCcHHHH------hhHHhhhhhccCc
Q 001202 826 SLLEKTCNFIRNF---PEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTA------ACYILVIAKLEGP 896 (1124)
Q Consensus 826 ~ll~~v~~fi~~f---~~~l~ivv~caRKtE~~~W~~LF~~~g~P~~Lf~~cl~~~~l~ta------a~yLivl~n~e~~ 896 (1124)
.++..+++.-.+. +...+++..++.+..-+.|...++++ .|++-++.+|.-+-. ...+--++++...
T Consensus 22 ~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL----~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~ 97 (125)
T PF01417_consen 22 KLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKAL----TLLEYLLKNGSERFVDELRDHIDIIRELQDFQYV 97 (125)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHH----HHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---B
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHH----HHHHHHHHHCCHHHHHHHHHHHHHHhhcceeecc
Confidence 6777777665333 33445555555456999999999984 678888888776433 3334445555432
Q ss_pred h--------hhHHHHHHHHHHHHh
Q 001202 897 A--------VSQYSALRLLQATLD 912 (1124)
Q Consensus 897 ~--------~~~~~a~~Ll~~al~ 912 (1124)
+ ..|+.|.+|++...+
T Consensus 98 d~~g~d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 98 DPKGKDQGQNVREKAKEILELLND 121 (125)
T ss_dssp BTTSTBHHHHHHHHHHHHHHHHTS
T ss_pred CCCCccHHHHHHHHHHHHHHHhCC
Confidence 2 145666666655443
No 471
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=25.69 E-value=81 Score=27.87 Aligned_cols=50 Identities=16% Similarity=0.231 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhhcccchhhHHHHHhccCCChHHHhhhcCccccccccHHHHHHHH---hhhcc
Q 001202 978 VKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQREGRVCARLENFASGLELI---GQKLQ 1038 (1124)
Q Consensus 978 ~~~~l~~~a~~l~~~~~l~~l~~f~~~~~f~~~~~l~~e~~~~~~~~~~~~~l~~~---~~~~~ 1038 (1124)
...+++..||.||...+-..|.+..++. +.+.--||+|+.||-.+ |+||.
T Consensus 4 ~~~m~ee~Ar~lL~e~E~~tm~yyl~eY-----------~~~~~tVealV~aL~elLnt~~K~s 56 (81)
T cd07357 4 TRSMVEEQARHLLSENERATLSYYLDEY-----------RSGHISVDALVMALFELLNTHEKFS 56 (81)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHH-----------HcCCCCHHHHHHHHHHHhccHHHHH
Confidence 5789999999999999888877655443 34445699999998776 55543
No 472
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=25.46 E-value=1.2e+03 Score=27.57 Aligned_cols=73 Identities=18% Similarity=0.132 Sum_probs=35.6
Q ss_pred EEccCCCEEEEE-ecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCee
Q 001202 263 SIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341 (1124)
Q Consensus 263 a~spdg~lLAsG-s~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l 341 (1124)
+|.+||+.|..+ ..||.-.+|-++-....+.++. + | .........++|+++.++-....+.++--|+.+.+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT--d-g----~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT--D-G----PGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE------S----S-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc--c-C----CCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence 467788665554 4477666666554344444444 1 1 001112356779888877665667888888877654
Q ss_pred e
Q 001202 342 M 342 (1124)
Q Consensus 342 ~ 342 (1124)
.
T Consensus 115 ~ 115 (386)
T PF14583_consen 115 R 115 (386)
T ss_dssp E
T ss_pred E
Confidence 3
No 473
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=25.27 E-value=1.2e+02 Score=23.16 Aligned_cols=31 Identities=19% Similarity=0.477 Sum_probs=23.8
Q ss_pred EEccCCCEEEEEcCCC------eE-EEEcCCCcEEEec
Q 001202 459 AASKDGMFLAVAGLHG------LI-LYDIRQKKWRVFG 489 (1124)
Q Consensus 459 a~SpdG~~lAvag~dG------~v-lwd~~sg~wk~f~ 489 (1124)
+..-+++..++||.++ .+ .||..+++|+...
T Consensus 7 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 7 AVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred EEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 3444788888888877 45 9999999998653
No 474
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=25.07 E-value=4.3e+02 Score=30.27 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=44.3
Q ss_pred hHHHHHhhcccccccchHHHHhhcC---Ch---HHHHHHHHhcCcHHHHhhHHhhhhhccCchhhHHHHHHHHHHHHhcc
Q 001202 841 YLNVVVSVARKTDGRHWADLFSAAG---RS---TELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDEC 914 (1124)
Q Consensus 841 ~l~ivv~caRKtE~~~W~~LF~~~g---~P---~~Lf~~cl~~~~l~taa~yLivl~n~e~~~~~~~~a~~Ll~~al~~~ 914 (1124)
|.-+.+.++= +.+.|..|+.-.+ +| .-+++.|++.|+-+.|..|+-=+.. -+-.++-+..|
T Consensus 210 fw~lki~aLa--~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~-----------~~rv~~y~~~~ 276 (319)
T PF04840_consen 210 FWWLKIKALA--ENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYIPKIPD-----------EERVEMYLKCG 276 (319)
T ss_pred HHHHHHHHHH--hcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHHHhCCh-----------HHHHHHHHHCC
Confidence 3334444433 4577888877665 55 4789999999999999999875332 11122335556
Q ss_pred cHhHHHHHH
Q 001202 915 LYELAGELV 923 (1124)
Q Consensus 915 ~w~l~~eL~ 923 (1124)
+|.-|.+.+
T Consensus 277 ~~~~A~~~A 285 (319)
T PF04840_consen 277 DYKEAAQEA 285 (319)
T ss_pred CHHHHHHHH
Confidence 666665554
No 475
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=24.81 E-value=1.2e+03 Score=27.70 Aligned_cols=278 Identities=13% Similarity=0.092 Sum_probs=128.4
Q ss_pred CCEEEEEecCCeEEEEEcCCCC-ceeEEEeeccCCCCCCCCCCeEEEEEC---C--CCCEEEEEECCCcEEEEEcCCC--
Q 001202 268 QQILAVGTRRGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWT---P--DNSAFAVGWKSRGLTVWSVSGC-- 339 (1124)
Q Consensus 268 g~lLAsGs~DgtV~vwd~~~~~-~~~~~l~~~~~g~~~~h~g~V~~lawS---P--DG~~Lasgs~Dg~I~vWdv~~~-- 339 (1124)
...|++|+.+|.++||+-...+ +....+--. . -..||..|..- + +...||+-. -+.+.||++...
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~--~----l~~PILqv~~G~F~s~~~~~~LaVLh-P~kl~vY~v~~~~g 109 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET--Q----LKDPILQVECGKFVSGSEDLQLAVLH-PRKLSVYSVSLVDG 109 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEE--e----cCCcEEEEEeccccCCCCcceEEEec-CCEEEEEEEEecCC
Confidence 4589999999999999986522 111111101 1 34678777653 2 344677644 368888888221
Q ss_pred e-------eeEEeccCC-cCceeeeEEcCCCCCC-cceEEEee---eEEEEeCCCCeEEEEecC--CcceEEEEeccceE
Q 001202 340 R-------LMSTIRQIS-LSSISSPIVKPNQDCK-YEPLMSGT---SMMQWDEYGYRLYAIEEG--SSERVLIFSFGKCC 405 (1124)
Q Consensus 340 ~-------l~~tl~~h~-~~~V~s~~~sp~~~~~-~~~l~sg~---~i~~W~~~~~~l~~~~~~--~~~~v~~~s~~k~~ 405 (1124)
. -+..+-.|. .....+.+..|-+..+ .+.+.--+ +..+++-++.-.-....+ .++.+.-.+-..++
T Consensus 110 ~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsf 189 (418)
T PF14727_consen 110 TVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSF 189 (418)
T ss_pred CcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEE
Confidence 1 111111221 1223344444444333 22222111 555555444332222222 12222222225566
Q ss_pred EeeccCCceeeeEee---ecCCeEEEeecCC----Ccc---ceeeecccceeeccCC--CceEEEEEccCCCEEEEEcCC
Q 001202 406 LNRGVSGMTYARQVI---YGEDRLLVVQSED----TDE---LKILHLNLPVSYISQN--WPVQHVAASKDGMFLAVAGLH 473 (1124)
Q Consensus 406 ~s~s~d~~v~~w~l~---~~~~~l~l~~~~~----~~~---~~w~~~~~p~~~~~~~--~~I~~va~SpdG~~lAvag~d 473 (1124)
++++.+..+..+... .......-..+.. ... -.|. |.--. -.|..+.++..-..+++=|+.
T Consensus 190 vt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs-------~nlGE~~l~i~v~~~~~~~~~IvvLger 262 (418)
T PF14727_consen 190 VTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWS-------FNLGEQALDIQVVRFSSSESDIVVLGER 262 (418)
T ss_pred EEecCceeEEEecHHHhhhccccccccccccccccccccccceeE-------EECCceeEEEEEEEcCCCCceEEEEecc
Confidence 666666555443311 0000000000000 000 0121 11000 013344445455566666666
Q ss_pred CeEEEEcCCCcEEEecCc-CceeeeEEEEE--EecCC---EEEEEEEecCCCeEEEEEeeCCCCCCcceEEEeecCCccE
Q 001202 474 GLILYDIRQKKWRVFGDI-TQEQKIQSKGL--LWLGK---IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPI 547 (1124)
Q Consensus 474 G~vlwd~~sg~wk~f~~~-~~e~~~~v~gl--~W~~~---~liv~~~~~~~~~~elrly~~~~ld~~~~l~~~~l~s~~l 547 (1124)
.....+- +|.-+..... ..-..+..... .|.++ .+++++ .+..|.+|.-. .+.|.-.++..|+
T Consensus 263 ~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t-----~t~~LlVy~d~-----~L~WsA~l~~~PV 331 (418)
T PF14727_consen 263 SLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGT-----HTGTLLVYEDT-----TLVWSAQLPHVPV 331 (418)
T ss_pred eEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEe-----cCCeEEEEeCC-----eEEEecCCCCCCE
Confidence 6554443 3443321111 11111222233 33333 255552 33489999543 6888888888899
Q ss_pred EEEee-----CCEEEEEEcCCeEEEEEE
Q 001202 548 VMDVY-----EDYILVTYRPFDVHIFHV 570 (1124)
Q Consensus 548 ~l~~~-----~~~llv~~~d~~i~l~~~ 570 (1124)
.+... ++.+++...+|.+.+.-+
T Consensus 332 al~v~~~~~~~G~IV~Ls~~G~L~v~YL 359 (418)
T PF14727_consen 332 ALSVANFNGLKGLIVSLSDEGQLSVSYL 359 (418)
T ss_pred EEEecccCCCCceEEEEcCCCcEEEEEe
Confidence 88764 345666777888888655
No 476
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=24.27 E-value=3.5e+02 Score=32.46 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=67.6
Q ss_pred CchHHHHHHHHHHhhcccccccccccccCCccccchhhhHHHHHHHhHcCchhHHHHHhhcccccccchHHHHhhcCChH
Q 001202 789 HFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRST 868 (1124)
Q Consensus 789 ~F~h~LE~lLh~vle~e~~~~~~~~~~~~i~~~~~~~~ll~~v~~fi~~f~~~l~ivv~caRKtE~~~W~~LF~~~g~P~ 868 (1124)
.|..-+.-||.-.+-+-. ..|| ++..-+.+||+.-|.+. ....+=..++
T Consensus 156 ~y~~L~~~Ll~p~lWe~~---------gniP------alvrLL~a~i~k~~~~i---------~~~~~l~~iL------- 204 (435)
T PF03378_consen 156 AYKQLFPPLLSPALWERR---------GNIP------ALVRLLQAYIKKDPSFI---------VANNQLEPIL------- 204 (435)
T ss_dssp TTGGGHHHHTSGGGGGST---------TTHH------HHHHHHHHHHHHHGGG-------------S-CHHHH-------
T ss_pred HHHHHHHHHcCcchhccC---------CCcC------cHHHHHHHHHHhCchhh---------cchhhHHHHH-------
Confidence 666667777766554322 1366 57777777777776654 1112222333
Q ss_pred HHHHHHHhcCcHHHHhhHHh--hhhhccCch---hhHHHHHHHHHHHHhcccHhHHHHHHHhhhcc
Q 001202 869 ELFEECFQRRWYRTAACYIL--VIAKLEGPA---VSQYSALRLLQATLDECLYELAGELVRFLLRS 929 (1124)
Q Consensus 869 ~Lf~~cl~~~~l~taa~yLi--vl~n~e~~~---~~~~~a~~Ll~~al~~~~w~l~~eL~RFl~~~ 929 (1124)
..|++||..+..+.-|=+|+ |+.++..+. .-.+.+.-|+...-..+-....+.+++|+..+
T Consensus 205 gvFQkLi~sk~~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 205 GVFQKLIASKANDHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 34999999999888888875 566666654 23566666677766678888999999998754
No 477
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=24.13 E-value=2e+03 Score=29.86 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=13.2
Q ss_pred eEEEEecCCcEEEEEeCC
Q 001202 71 LQAVWSPDTKLIAVVTSS 88 (1124)
Q Consensus 71 ~~v~wSPDg~~Lav~t~d 88 (1124)
.+++++|||-.-++-|..
T Consensus 596 r~Iavg~~G~lyvaEsD~ 613 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDG 613 (1899)
T ss_pred hceeecCCceEEEEeccc
Confidence 579999999766665544
No 478
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=22.70 E-value=2e+02 Score=23.74 Aligned_cols=57 Identities=21% Similarity=0.189 Sum_probs=42.8
Q ss_pred HHhcCcHHHHhhHHhhhhhccCchhhHHHHHHHHHHHHhcccHhHHHHHHHhhhccccc
Q 001202 874 CFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLLRSGRE 932 (1124)
Q Consensus 874 cl~~~~l~taa~yLivl~n~e~~~~~~~~a~~Ll~~al~~~~w~l~~eL~RFl~~~~~~ 932 (1124)
.++.|+++.|..++-=+...++.+ ....+.|.+..+..|+++-|.+++.=+...+|.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN--PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS--HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 367899999999987776666653 455667888899999999999998766665554
No 479
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=21.39 E-value=1.2e+03 Score=27.94 Aligned_cols=100 Identities=8% Similarity=0.103 Sum_probs=43.6
Q ss_pred CCceEeeecccccee----cCCCCeE--EEEEccC--CCE-EEEEecCCeEEEEEcCCCCce--eEEEeeccC---C--C
Q 001202 239 KKGLKLAEFIKIDKE----LGSGDAV--CASIAPE--QQI-LAVGTRRGVVELYDLAESASL--IRTVSLYDW---G--Y 302 (1124)
Q Consensus 239 d~~i~~wd~~~~~~~----~gh~~~v--~va~spd--g~l-LAsGs~DgtV~vwd~~~~~~~--~~~l~~~~~---g--~ 302 (1124)
..++.+||..+.+.. .|-.+.+ .+.|.++ ... ++.+.-.++|-.|--+..++. .+.+.+... + .
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 356888998876544 3433333 6766554 443 222223445544433221321 112222111 0 0
Q ss_pred CC------CCCCCeEEEEECCCCCEE-EEEECCCcEEEEEcCC
Q 001202 303 SM------DDTGPVSCIAWTPDNSAF-AVGWKSRGLTVWSVSG 338 (1124)
Q Consensus 303 ~~------~h~g~V~~lawSPDG~~L-asgs~Dg~I~vWdv~~ 338 (1124)
+. +-.+-|+.|..|.|.++| +++|-+|.++-||+..
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 00 002457999999999977 5677899999999965
No 480
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=21.38 E-value=1.2e+03 Score=26.19 Aligned_cols=229 Identities=14% Similarity=0.115 Sum_probs=108.6
Q ss_pred EEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeec
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~ 298 (1124)
.++..+||.+.+++...+.+-..|..+++.. .|....- .|.+-|||..-.+-+..+..|+ +-+ .....++.+.
T Consensus 66 dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~-dpk--t~evt~f~lp 142 (353)
T COG4257 66 DVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRL-DPK--TLEVTRFPLP 142 (353)
T ss_pred ccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEe-cCc--ccceEEeecc
Confidence 4555678887777666666655566665433 2322222 5667788775544333333332 222 2223333332
Q ss_pred cCCCCCCC-CCCeEEEEECCCCCEEEEEEC---------CCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcce
Q 001202 299 DWGYSMDD-TGPVSCIAWTPDNSAFAVGWK---------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP 368 (1124)
Q Consensus 299 ~~g~~~~h-~g~V~~lawSPDG~~Lasgs~---------Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~ 368 (1124)
. +| .+......|.++|..-+++.. .+.|+||...-+. .-+.++..|++ +.
T Consensus 143 ~-----~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~-----------gpyGi~atpdG----sv 202 (353)
T COG4257 143 L-----EHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG-----------GPYGICATPDG----SV 202 (353)
T ss_pred c-----ccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC-----------CCcceEECCCC----cE
Confidence 1 23 345778899999999888753 1345666553221 22345556666 32
Q ss_pred EEEeeeEEEEeCCCCeEEEEe--cCCcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccc
Q 001202 369 LMSGTSMMQWDEYGYRLYAIE--EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (1124)
Q Consensus 369 l~sg~~i~~W~~~~~~l~~~~--~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p 445 (1124)
..+. ..+..+..+. .+|.+.+..-.. .+-.-....|..-++|....+..+++.+..... .|....+|
T Consensus 203 wyas-------lagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~---sW~eypLP 272 (353)
T COG4257 203 WYAS-------LAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT---SWIEYPLP 272 (353)
T ss_pred EEEe-------ccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc---cceeeeCC
Confidence 2210 1122222211 122222211111 011112234555567776666666665554333 37766666
Q ss_pred eeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEe
Q 001202 446 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (1124)
Q Consensus 446 ~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f 488 (1124)
.. +-.-.++-++..|+.-.+=-.-|.+ -+|..+-+...+
T Consensus 273 gs----~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~ 312 (353)
T COG4257 273 GS----KARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVL 312 (353)
T ss_pred CC----CCCcceeeeccCCcEEeeccccCceeecCcccceEEEe
Confidence 42 1112334444444433322333444 666666555544
No 481
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=21.06 E-value=1.8e+03 Score=28.11 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=26.6
Q ss_pred CCceEEEEEccCCCEEEEEcCCCeE-EEEcC
Q 001202 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (1124)
Q Consensus 452 ~~~I~~va~SpdG~~lAvag~dG~v-lwd~~ 481 (1124)
...|-.+-|+++++.+.+.-++|.+ +||..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~ 159 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFS 159 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecc
Confidence 3467889999999999999999999 99993
No 482
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=20.73 E-value=1.6e+03 Score=27.58 Aligned_cols=30 Identities=3% Similarity=-0.035 Sum_probs=24.9
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeeeEEecc
Q 001202 318 DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 318 DG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~ 347 (1124)
.|..++.+..||.++.+|..+++.+...+-
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 455777788899999999999998877754
No 483
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=20.31 E-value=1.2e+02 Score=23.63 Aligned_cols=28 Identities=18% Similarity=0.458 Sum_probs=18.1
Q ss_pred ccCCCEEEEEcCCC------eE-EEEcCCCcEEEe
Q 001202 461 SKDGMFLAVAGLHG------LI-LYDIRQKKWRVF 488 (1124)
Q Consensus 461 SpdG~~lAvag~dG------~v-lwd~~sg~wk~f 488 (1124)
.++++.++.||.+. .+ +||+.+++|...
T Consensus 10 ~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 10 IGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp E-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 35678888888764 35 889999999765
No 484
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=20.13 E-value=83 Score=28.38 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=26.4
Q ss_pred EEEEccCCCEEEEEcCCCeEEEEcCCCcEEEe
Q 001202 457 HVAASKDGMFLAVAGLHGLILYDIRQKKWRVF 488 (1124)
Q Consensus 457 ~va~SpdG~~lAvag~dG~vlwd~~sg~wk~f 488 (1124)
++.++-.|.-+|+||.+|-.+|-+.|++.+.+
T Consensus 2 ~v~~~~~g~~lAiGG~~g~~~Wfvtt~~v~~~ 33 (86)
T PF11090_consen 2 CVTIEHKGRPLAIGGNNGGCLWFVTTNKVKSL 33 (86)
T ss_pred eEEEecCCeEEEEccccCCeEEEEECcHHhhc
Confidence 56778899999999999878899988875533
No 485
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=20.11 E-value=6.8e+02 Score=29.21 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=50.2
Q ss_pred cccchHHHHhhcCChHHHHHHHHhcCcHHHHhhHHhhhhhccCchhhHHHHHHHHHH-HHhcccHhHHHHHHH
Q 001202 853 DGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQA-TLDECLYELAGELVR 924 (1124)
Q Consensus 853 E~~~W~~LF~~~g~P~~Lf~~cl~~~~l~taa~yLivl~n~e~~~~~~~~a~~Ll~~-al~~~~w~l~~eL~R 924 (1124)
-...|-.||.+ ++.+.++|..+||..|-.+|..|++.. +-..++-.++. |+..++|++--+++.
T Consensus 99 NR~fflal~r~-------i~~L~~RG~~rTAlE~~KlLlsLdp~~-DP~g~ll~ID~~ALrs~~y~~Li~~~~ 163 (360)
T PF04910_consen 99 NRQFFLALFRY-------IQSLGRRGCWRTALEWCKLLLSLDPDE-DPLGVLLFIDYYALRSRQYQWLIDFSE 163 (360)
T ss_pred chHHHHHHHHH-------HHHHHhcCcHHHHHHHHHHHHhcCCCC-CcchhHHHHHHHHHhcCCHHHHHHHHH
Confidence 34567777777 788899999999999999999999885 34556666666 999999987655554
Done!