Query 001202
Match_columns 1124
No_of_seqs 582 out of 3849
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 16:13:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 1.6E-37 5.6E-42 385.9 52.6 458 22-571 21-566 (611)
2 2ymu_A WD-40 repeat protein; u 100.0 2.8E-36 9.6E-41 370.3 59.2 484 19-569 14-577 (577)
3 1nr0_A Actin interacting prote 100.0 2.9E-35 1E-39 365.6 52.3 438 23-570 63-609 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 2.3E-33 7.8E-38 344.4 53.6 446 20-527 56-577 (577)
5 3mkq_A Coatomer beta'-subunit; 100.0 4E-32 1.4E-36 347.6 55.0 651 22-928 16-709 (814)
6 1pgu_A Actin interacting prote 100.0 6.4E-32 2.2E-36 333.2 54.1 460 23-571 22-613 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 4.2E-33 1.4E-37 374.0 46.8 498 20-570 614-1247(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 1E-30 3.6E-35 337.9 43.7 408 22-486 20-668 (902)
9 4g56_B MGC81050 protein; prote 100.0 4E-30 1.4E-34 297.5 30.8 319 24-482 10-343 (357)
10 3ow8_A WD repeat-containing pr 100.0 3.1E-29 1.1E-33 285.6 37.4 274 129-480 29-319 (321)
11 1got_B GT-beta; complex (GTP-b 100.0 3.4E-29 1.2E-33 287.3 37.1 279 66-479 54-340 (340)
12 1vyh_C Platelet-activating fac 100.0 5.5E-29 1.9E-33 293.5 38.8 277 128-480 104-409 (410)
13 3sfz_A APAF-1, apoptotic pepti 100.0 8.2E-28 2.8E-32 322.6 54.6 425 66-571 614-1115(1249)
14 4gqb_B Methylosome protein 50; 100.0 2.9E-29 9.9E-34 288.9 32.6 226 225-484 89-333 (344)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 2E-28 6.8E-33 281.6 37.6 302 69-484 18-337 (345)
16 2pbi_B Guanine nucleotide-bind 100.0 2.7E-28 9.1E-33 281.8 37.4 284 66-479 63-354 (354)
17 1vyh_C Platelet-activating fac 100.0 6.1E-29 2.1E-33 293.1 32.0 272 204-528 104-409 (410)
18 3iz6_a 40S ribosomal protein R 100.0 4.7E-29 1.6E-33 290.8 30.6 296 66-484 65-377 (380)
19 3frx_A Guanine nucleotide-bind 100.0 9.5E-28 3.3E-32 272.8 40.5 288 66-483 16-318 (319)
20 2ynn_A Coatomer subunit beta'; 100.0 4.2E-28 1.4E-32 273.6 35.9 279 128-482 9-302 (304)
21 3ow8_A WD repeat-containing pr 100.0 1.4E-27 4.7E-32 272.0 38.8 273 66-419 31-319 (321)
22 2oaj_A Protein SNI1; WD40 repe 100.0 2.3E-27 8E-32 306.6 45.2 222 67-361 17-282 (902)
23 1pgu_A Actin interacting prote 100.0 4E-27 1.4E-31 290.3 45.1 419 66-571 17-571 (615)
24 2hes_X YDR267CP; beta-propelle 100.0 1.3E-27 4.4E-32 273.0 37.3 285 128-482 10-328 (330)
25 1r5m_A SIR4-interacting protei 100.0 1.8E-27 6.2E-32 278.2 38.6 364 41-481 26-424 (425)
26 1got_B GT-beta; complex (GTP-b 100.0 2.4E-27 8.2E-32 271.9 38.5 276 20-379 54-340 (340)
27 1erj_A Transcriptional repress 100.0 3.8E-27 1.3E-31 276.0 40.8 224 224-482 129-389 (393)
28 2pm9_A Protein WEB1, protein t 100.0 1.2E-28 4.1E-33 288.6 27.1 344 68-483 13-415 (416)
29 2ynn_A Coatomer subunit beta'; 100.0 1.7E-27 5.7E-32 268.7 35.4 239 205-486 10-263 (304)
30 3vl1_A 26S proteasome regulato 100.0 1.8E-27 6.1E-32 279.5 36.1 329 70-482 59-419 (420)
31 4gqb_B Methylosome protein 50; 100.0 3.5E-27 1.2E-31 271.5 34.8 266 224-529 36-330 (344)
32 4aow_A Guanine nucleotide-bind 100.0 2.1E-26 7.2E-31 261.5 40.2 290 66-484 37-339 (340)
33 4ery_A WD repeat-containing pr 100.0 2.5E-26 8.4E-31 259.2 39.5 276 127-481 18-311 (312)
34 4h5i_A Guanine nucleotide-exch 100.0 3.4E-27 1.2E-31 273.8 32.5 302 69-483 16-344 (365)
35 1gxr_A ESG1, transducin-like e 100.0 1.3E-26 4.4E-31 262.3 36.5 311 68-480 10-335 (337)
36 2xzm_R RACK1; ribosome, transl 100.0 2.4E-26 8.2E-31 263.8 36.6 297 126-483 15-341 (343)
37 3fm0_A Protein CIAO1; WDR39,SG 100.0 4E-26 1.4E-30 262.4 37.0 284 223-529 21-334 (345)
38 2hes_X YDR267CP; beta-propelle 100.0 4.1E-26 1.4E-30 260.6 36.8 283 204-529 10-327 (330)
39 1erj_A Transcriptional repress 100.0 5.3E-26 1.8E-30 266.3 35.5 260 22-361 67-363 (393)
40 4g56_B MGC81050 protein; prote 100.0 8.8E-27 3E-31 269.4 28.4 275 206-529 40-342 (357)
41 3frx_A Guanine nucleotide-bind 100.0 1.5E-25 5E-30 254.8 37.4 272 253-571 13-316 (319)
42 2pbi_B Guanine nucleotide-bind 100.0 7.6E-26 2.6E-30 261.2 35.4 276 204-527 60-354 (354)
43 2ovr_B FBW7, F-BOX/WD repeat p 99.9 2.5E-25 8.7E-30 264.4 39.4 303 74-482 124-442 (445)
44 1gxr_A ESG1, transducin-like e 99.9 3.3E-25 1.1E-29 250.7 38.5 312 22-420 12-336 (337)
45 4aow_A Guanine nucleotide-bind 99.9 3.3E-25 1.1E-29 251.6 36.6 301 2-383 19-338 (340)
46 3gre_A Serine/threonine-protei 99.9 6.4E-27 2.2E-31 277.0 23.2 372 23-479 31-437 (437)
47 2j04_B YDR362CP, TAU91; beta p 99.9 1.9E-26 6.5E-31 279.7 26.2 260 206-482 205-517 (524)
48 3dm0_A Maltose-binding peripla 99.9 3.5E-25 1.2E-29 279.0 38.5 297 66-481 381-692 (694)
49 2j04_A TAU60, YPL007P, hypothe 99.9 5.9E-26 2E-30 269.9 29.3 236 208-472 85-350 (588)
50 1k8k_C P40, ARP2/3 complex 41 99.9 3.5E-25 1.2E-29 254.8 34.2 318 67-483 8-362 (372)
51 2xzm_R RACK1; ribosome, transl 99.9 1.1E-24 3.9E-29 249.8 38.2 283 204-528 17-338 (343)
52 3iz6_a 40S ribosomal protein R 99.9 6.5E-26 2.2E-30 264.2 28.0 279 253-571 62-374 (380)
53 4ery_A WD repeat-containing pr 99.9 1.3E-24 4.4E-29 245.1 37.7 275 203-528 18-310 (312)
54 3v7d_B Cell division control p 99.9 4.4E-24 1.5E-28 254.7 44.3 318 129-527 118-462 (464)
55 2pm7_B Protein transport prote 99.9 5.1E-25 1.7E-29 247.5 33.9 251 204-489 5-293 (297)
56 3vl1_A 26S proteasome regulato 99.9 4.8E-25 1.6E-29 258.8 34.3 306 224-571 62-418 (420)
57 3ei3_B DNA damage-binding prot 99.9 4.2E-25 1.4E-29 256.6 33.2 293 67-482 73-382 (383)
58 1r5m_A SIR4-interacting protei 99.9 6.7E-25 2.3E-29 256.4 34.5 326 22-419 48-423 (425)
59 2pm9_A Protein WEB1, protein t 99.9 5.9E-26 2E-30 265.7 25.3 326 24-421 17-414 (416)
60 3mkq_A Coatomer beta'-subunit; 99.9 2.6E-24 8.8E-29 275.2 42.4 378 67-569 13-420 (814)
61 3bg1_A Protein SEC13 homolog; 99.9 1.6E-25 5.6E-30 253.9 27.4 252 204-491 9-303 (316)
62 4e54_B DNA damage-binding prot 99.9 6.2E-26 2.1E-30 269.3 23.3 303 68-485 120-433 (435)
63 3i2n_A WD repeat-containing pr 99.9 2.5E-24 8.7E-29 245.8 33.9 306 66-483 17-354 (357)
64 2j04_B YDR362CP, TAU91; beta p 99.9 1.5E-25 5.2E-30 271.8 24.6 317 29-420 171-516 (524)
65 4gga_A P55CDC, cell division c 99.9 3.5E-24 1.2E-28 252.9 35.5 273 23-384 109-397 (420)
66 3k26_A Polycomb protein EED; W 99.9 2.2E-24 7.5E-29 246.9 30.8 288 129-482 15-366 (366)
67 3v7d_B Cell division control p 99.9 1.7E-23 5.8E-28 249.6 39.4 296 74-476 127-456 (464)
68 4ggc_A P55CDC, cell division c 99.9 1.6E-23 5.5E-28 235.2 36.8 271 23-382 29-315 (318)
69 2ovr_B FBW7, F-BOX/WD repeat p 99.9 8.2E-23 2.8E-27 242.7 44.2 311 129-529 115-441 (445)
70 4aez_A CDC20, WD repeat-contai 99.9 1.7E-23 6E-28 245.2 36.5 273 134-484 95-382 (401)
71 3dwl_C Actin-related protein 2 99.9 4.8E-25 1.6E-29 255.1 22.8 241 67-381 11-280 (377)
72 1k8k_C P40, ARP2/3 complex 41 99.9 1.2E-23 4.2E-28 241.8 34.4 234 223-488 13-282 (372)
73 3zwl_B Eukaryotic translation 99.9 3E-23 1E-27 237.4 36.7 290 127-484 27-348 (369)
74 3dm0_A Maltose-binding peripla 99.9 2E-23 7E-28 262.9 38.3 273 254-571 379-692 (694)
75 3odt_A Protein DOA1; ubiquitin 99.9 4.3E-23 1.5E-27 231.0 36.5 275 20-385 17-299 (313)
76 4a11_B DNA excision repair pro 99.9 1.3E-23 4.6E-28 244.2 33.6 309 66-484 42-367 (408)
77 3dwl_C Actin-related protein 2 99.9 1.6E-24 5.3E-29 250.8 25.2 236 222-487 15-286 (377)
78 1sq9_A Antiviral protein SKI8; 99.9 1.6E-23 5.6E-28 243.6 33.9 311 127-484 11-397 (397)
79 3dw8_B Serine/threonine-protei 99.9 1.3E-23 4.3E-28 248.6 33.2 349 64-480 25-444 (447)
80 3zwl_B Eukaryotic translation 99.9 6.1E-23 2.1E-27 234.9 37.8 286 20-382 31-346 (369)
81 3i2n_A WD repeat-containing pr 99.9 1.2E-23 4.2E-28 240.1 29.6 288 23-384 22-355 (357)
82 3f3f_A Nucleoporin SEH1; struc 99.9 2.1E-23 7.1E-28 235.8 31.2 264 204-487 7-343 (351)
83 4h5i_A Guanine nucleotide-exch 99.9 1.4E-23 4.9E-28 243.2 30.5 280 21-381 16-342 (365)
84 3odt_A Protein DOA1; ubiquitin 99.9 1.1E-22 3.8E-27 227.6 36.0 273 127-486 13-300 (313)
85 3k26_A Polycomb protein EED; W 99.9 1.4E-23 4.9E-28 240.2 29.3 291 204-528 14-364 (366)
86 4aez_A CDC20, WD repeat-contai 99.9 2E-22 6.7E-27 236.2 38.7 273 27-388 99-386 (401)
87 2pm7_B Protein transport prote 99.9 1.9E-23 6.4E-28 234.7 28.6 239 254-528 6-283 (297)
88 4gga_A P55CDC, cell division c 99.9 1.3E-22 4.4E-27 239.4 37.2 233 206-482 145-395 (420)
89 4e54_B DNA damage-binding prot 99.9 1.7E-23 5.9E-28 248.3 29.6 282 24-385 124-433 (435)
90 1p22_A F-BOX/WD-repeat protein 99.9 9.7E-23 3.3E-27 241.6 33.0 273 131-484 132-416 (435)
91 3gre_A Serine/threonine-protei 99.9 1.5E-22 5.2E-27 239.3 34.1 256 222-484 67-361 (437)
92 4gq1_A NUP37; propeller, trans 99.9 5E-23 1.7E-27 241.1 27.5 333 71-481 19-388 (393)
93 3jrp_A Fusion protein of prote 99.9 1.9E-22 6.7E-27 231.9 30.8 247 204-489 7-295 (379)
94 3ei3_B DNA damage-binding prot 99.9 3.3E-22 1.1E-26 232.1 32.6 289 204-529 69-381 (383)
95 1sq9_A Antiviral protein SKI8; 99.9 9.4E-22 3.2E-26 228.6 36.5 289 66-422 15-396 (397)
96 3bg1_A Protein SEC13 homolog; 99.9 4.2E-23 1.4E-27 234.1 23.2 239 254-528 10-291 (316)
97 4ggc_A P55CDC, cell division c 99.9 1.6E-21 5.6E-26 218.8 35.7 235 206-482 65-315 (318)
98 2aq5_A Coronin-1A; WD40 repeat 99.9 3.5E-22 1.2E-26 233.9 29.4 267 224-528 40-340 (402)
99 1yfq_A Cell cycle arrest prote 99.9 9.8E-22 3.3E-26 223.3 31.8 277 20-373 10-311 (342)
100 3dw8_B Serine/threonine-protei 99.9 2.5E-22 8.5E-27 237.5 27.0 242 206-487 26-378 (447)
101 1yfq_A Cell cycle arrest prote 99.9 4.3E-21 1.5E-25 218.0 36.1 272 66-418 10-321 (342)
102 2aq5_A Coronin-1A; WD40 repeat 99.9 1.1E-21 3.6E-26 229.8 30.4 240 204-485 77-345 (402)
103 2j04_A TAU60, YPL007P, hypothe 99.9 1.2E-22 4.2E-27 241.5 22.1 252 136-480 21-295 (588)
104 1p22_A F-BOX/WD-repeat protein 99.9 1.5E-21 5.3E-26 231.2 31.1 255 224-529 137-413 (435)
105 3jrp_A Fusion protein of prote 99.9 1.5E-21 5.1E-26 224.4 29.2 240 254-529 8-286 (379)
106 2w18_A PALB2, fancn, partner a 99.9 3.3E-21 1.1E-25 216.3 29.8 183 266-480 143-355 (356)
107 4a11_B DNA excision repair pro 99.9 1.9E-21 6.6E-26 226.0 28.9 316 240-571 23-364 (408)
108 3vu4_A KMHSV2; beta-propeller 99.9 3E-21 1E-25 222.7 30.2 292 66-482 18-336 (355)
109 3mmy_A MRNA export factor; mRN 99.9 8E-21 2.7E-25 217.1 32.5 277 204-514 35-335 (368)
110 3f3f_A Nucleoporin SEH1; struc 99.9 6.2E-21 2.1E-25 215.4 31.1 289 66-424 10-340 (351)
111 2vdu_B TRNA (guanine-N(7)-)-me 99.9 2.9E-20 9.7E-25 221.4 37.0 273 21-361 6-365 (450)
112 2vdu_B TRNA (guanine-N(7)-)-me 99.9 6.9E-21 2.4E-25 226.8 31.5 258 256-528 101-389 (450)
113 3mmy_A MRNA export factor; mRN 99.9 2.2E-20 7.7E-25 213.4 33.1 271 20-373 38-334 (368)
114 3jro_A Fusion protein of prote 99.9 2.5E-21 8.6E-26 246.1 27.2 251 204-489 5-293 (753)
115 2xyi_A Probable histone-bindin 99.9 8.3E-20 2.8E-24 216.3 30.2 244 222-484 132-412 (430)
116 1l0q_A Surface layer protein; 99.9 1.7E-18 5.8E-23 201.0 39.9 269 32-393 3-286 (391)
117 3lrv_A PRE-mRNA-splicing facto 99.9 4.7E-20 1.6E-24 211.2 26.1 229 227-487 45-299 (343)
118 3vu4_A KMHSV2; beta-propeller 99.9 1.7E-19 5.7E-24 208.1 30.0 291 254-575 16-339 (355)
119 3jro_A Fusion protein of prote 99.8 4.4E-20 1.5E-24 234.6 24.9 242 254-529 6-284 (753)
120 3lrv_A PRE-mRNA-splicing facto 99.8 7.1E-20 2.4E-24 209.7 24.1 189 254-479 122-330 (343)
121 1k32_A Tricorn protease; prote 99.8 8.3E-18 2.8E-22 221.5 46.1 461 23-529 56-636 (1045)
122 2xyi_A Probable histone-bindin 99.8 1.5E-18 5E-23 205.5 34.9 305 69-421 47-410 (430)
123 1k32_A Tricorn protease; prote 99.8 3.3E-18 1.1E-22 225.3 41.0 220 222-481 248-501 (1045)
124 4gq1_A NUP37; propeller, trans 99.8 8.8E-20 3E-24 213.5 23.0 256 223-512 94-377 (393)
125 3bws_A Protein LP49; two-domai 99.8 7.2E-18 2.5E-22 198.5 35.5 229 206-482 167-432 (433)
126 3bws_A Protein LP49; two-domai 99.8 1.1E-17 3.9E-22 196.8 33.8 271 24-382 127-432 (433)
127 1l0q_A Surface layer protein; 99.8 1.4E-17 4.9E-22 193.2 33.3 224 223-485 36-278 (391)
128 2w18_A PALB2, fancn, partner a 99.8 8.1E-18 2.8E-22 188.8 29.6 148 223-380 183-355 (356)
129 1nir_A Nitrite reductase; hemo 99.8 2.2E-17 7.6E-22 201.4 34.6 347 23-486 141-518 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 99.7 1.2E-16 4.2E-21 188.2 27.1 206 223-465 183-410 (415)
131 2ecf_A Dipeptidyl peptidase IV 99.7 1.2E-15 4E-20 193.2 35.1 336 68-483 37-460 (741)
132 2hqs_A Protein TOLB; TOLB, PAL 99.7 2.8E-15 9.7E-20 176.6 30.0 224 240-506 159-407 (415)
133 1nir_A Nitrite reductase; hemo 99.7 4.7E-15 1.6E-19 180.8 31.8 286 223-529 183-513 (543)
134 1xfd_A DIP, dipeptidyl aminope 99.7 7.5E-16 2.6E-20 194.2 25.2 314 70-472 19-429 (723)
135 2z3z_A Dipeptidyl aminopeptida 99.7 9.3E-15 3.2E-19 183.8 33.5 119 239-362 234-367 (706)
136 2ojh_A Uncharacterized protein 99.7 1.1E-14 3.9E-19 160.1 27.2 245 39-371 21-288 (297)
137 2ecf_A Dipeptidyl peptidase IV 99.6 5.1E-14 1.7E-18 178.1 33.0 264 223-528 113-457 (741)
138 3u4y_A Uncharacterized protein 99.6 1.8E-13 6.2E-18 154.6 33.1 151 224-385 89-255 (331)
139 1ri6_A Putative isomerase YBHE 99.6 3.7E-13 1.3E-17 152.0 34.4 276 32-384 6-312 (343)
140 3o4h_A Acylamino-acid-releasin 99.6 4.2E-14 1.4E-18 173.9 28.5 245 21-362 23-293 (582)
141 3hfq_A Uncharacterized protein 99.6 1.9E-13 6.5E-18 155.9 31.8 243 223-486 44-323 (347)
142 2z3z_A Dipeptidyl aminopeptida 99.6 2.4E-13 8.2E-18 171.0 34.6 307 23-384 85-437 (706)
143 1ri6_A Putative isomerase YBHE 99.6 1.3E-13 4.6E-18 155.7 29.2 236 223-487 42-315 (343)
144 3o4h_A Acylamino-acid-releasin 99.6 7.2E-14 2.5E-18 171.8 28.5 186 225-481 116-312 (582)
145 2oit_A Nucleoporin 214KDA; NH2 99.6 2.7E-14 9.1E-19 169.3 22.9 208 258-529 37-277 (434)
146 1z68_A Fibroblast activation p 99.6 4.6E-14 1.6E-18 178.0 26.1 258 23-340 19-348 (719)
147 3vgz_A Uncharacterized protein 99.6 9.6E-13 3.3E-17 149.6 33.3 260 24-362 45-325 (353)
148 2ojh_A Uncharacterized protein 99.6 1.1E-13 3.9E-18 152.0 24.4 224 217-474 40-293 (297)
149 1xfd_A DIP, dipeptidyl aminope 99.6 5.9E-14 2E-18 176.9 24.7 237 223-482 65-393 (723)
150 3hfq_A Uncharacterized protein 99.6 2.9E-12 9.8E-17 146.1 36.3 283 40-387 16-324 (347)
151 1pby_B Quinohemoprotein amine 99.6 2.6E-13 8.8E-18 152.9 24.2 221 223-484 38-312 (337)
152 3u4y_A Uncharacterized protein 99.6 2.4E-12 8.2E-17 145.3 32.0 267 27-384 5-306 (331)
153 3vgz_A Uncharacterized protein 99.5 3.9E-12 1.3E-16 144.5 33.2 219 223-475 93-336 (353)
154 3scy_A Hypothetical bacterial 99.5 1.9E-11 6.4E-16 140.2 38.7 282 39-388 26-345 (361)
155 4a5s_A Dipeptidyl peptidase 4 99.5 2.6E-12 8.9E-17 162.8 32.4 249 70-391 19-362 (740)
156 1pby_B Quinohemoprotein amine 99.5 1.9E-12 6.4E-17 145.8 27.5 270 231-529 2-309 (337)
157 2oit_A Nucleoporin 214KDA; NH2 99.5 8.4E-13 2.9E-17 156.3 24.1 156 256-422 91-279 (434)
158 3scy_A Hypothetical bacterial 99.5 6E-11 2.1E-15 136.0 38.0 109 229-341 108-245 (361)
159 1jmx_B Amine dehydrogenase; ox 99.5 1.8E-12 6.1E-17 146.9 22.7 157 225-390 6-183 (349)
160 1jof_A Carboxy-CIS,CIS-muconat 99.4 6.6E-12 2.3E-16 144.8 24.6 237 223-484 44-343 (365)
161 1z68_A Fibroblast activation p 99.4 2.6E-12 8.9E-17 161.9 22.7 230 223-482 64-391 (719)
162 1jmx_B Amine dehydrogenase; ox 99.4 1.6E-11 5.3E-16 139.1 26.2 277 26-347 6-334 (349)
163 4a5s_A Dipeptidyl peptidase 4 99.4 3.3E-11 1.1E-15 152.6 26.6 255 261-529 21-352 (740)
164 3pe7_A Oligogalacturonate lyas 99.3 3.8E-11 1.3E-15 138.7 22.4 220 225-480 87-380 (388)
165 1jof_A Carboxy-CIS,CIS-muconat 99.3 1.3E-10 4.3E-15 134.0 24.7 248 24-340 44-343 (365)
166 2oiz_A Aromatic amine dehydrog 99.3 2.5E-10 8.5E-15 131.6 26.8 273 23-362 53-359 (361)
167 3azo_A Aminopeptidase; POP fam 99.3 2.3E-09 8E-14 133.4 33.5 114 223-343 134-279 (662)
168 3pe7_A Oligogalacturonate lyas 99.3 6.9E-10 2.4E-14 128.0 26.7 277 262-573 41-383 (388)
169 3c5m_A Oligogalacturonate lyas 99.2 4.3E-10 1.5E-14 129.8 22.9 127 223-362 192-362 (396)
170 3fvz_A Peptidyl-glycine alpha- 99.2 4.4E-09 1.5E-13 119.3 27.6 235 223-482 28-322 (329)
171 1q7f_A NHL, brain tumor CG1071 99.1 2E-08 6.7E-13 110.8 29.9 224 223-482 34-280 (286)
172 2gop_A Trilobed protease; beta 99.1 1.1E-08 3.7E-13 116.0 27.4 234 229-512 23-316 (347)
173 3azo_A Aminopeptidase; POP fam 99.1 1.3E-08 4.3E-13 126.8 30.4 236 265-528 87-367 (662)
174 3c5m_A Oligogalacturonate lyas 99.1 1.3E-09 4.6E-14 125.5 19.3 149 225-388 87-279 (396)
175 2bkl_A Prolyl endopeptidase; m 99.1 1.9E-09 6.7E-14 135.3 22.1 232 224-488 126-403 (695)
176 3fvz_A Peptidyl-glycine alpha- 99.1 6.5E-09 2.2E-13 117.8 23.3 254 22-339 26-323 (329)
177 3e5z_A Putative gluconolactona 99.1 1.5E-08 5.3E-13 112.5 25.4 230 220-485 29-289 (296)
178 1q7f_A NHL, brain tumor CG1071 99.1 6.7E-08 2.3E-12 106.5 29.2 145 223-380 125-278 (286)
179 2xdw_A Prolyl endopeptidase; a 99.0 1.9E-08 6.4E-13 126.6 27.4 229 224-484 130-416 (710)
180 2oiz_A Aromatic amine dehydrog 99.0 1.3E-07 4.4E-12 108.8 32.0 278 39-389 30-343 (361)
181 2xdw_A Prolyl endopeptidase; a 99.0 7.3E-08 2.5E-12 121.3 32.0 131 223-362 237-391 (710)
182 1yr2_A Prolyl oligopeptidase; 99.0 2.5E-08 8.6E-13 126.2 25.4 236 223-489 167-448 (741)
183 2gop_A Trilobed protease; beta 99.0 4.3E-08 1.5E-12 111.1 24.8 217 223-488 63-336 (347)
184 2dg1_A DRP35, lactonase; beta 99.0 5.5E-08 1.9E-12 109.7 24.2 232 228-484 15-265 (333)
185 2bkl_A Prolyl endopeptidase; m 98.9 2.5E-07 8.6E-12 116.1 31.2 236 255-529 118-396 (695)
186 1qks_A Cytochrome CD1 nitrite 98.9 1.6E-06 5.5E-11 105.5 36.9 240 27-338 163-421 (567)
187 1rwi_B Serine/threonine-protei 98.9 1.2E-07 4.2E-12 103.1 24.4 226 223-483 28-265 (270)
188 2dg1_A DRP35, lactonase; beta 98.9 5E-07 1.7E-11 101.7 28.7 147 222-381 48-212 (333)
189 3no2_A Uncharacterized protein 98.8 7.8E-07 2.7E-11 98.2 26.5 211 228-470 3-230 (276)
190 1yr2_A Prolyl oligopeptidase; 98.8 5.2E-07 1.8E-11 114.0 28.3 149 223-384 272-443 (741)
191 2z2n_A Virginiamycin B lyase; 98.8 1.1E-05 3.8E-10 88.5 35.2 251 223-512 19-282 (299)
192 2mad_H Methylamine dehydrogena 98.8 2.4E-06 8.2E-11 98.6 30.9 75 261-345 271-357 (373)
193 2z2n_A Virginiamycin B lyase; 98.8 2.2E-05 7.6E-10 86.0 35.8 224 224-484 62-297 (299)
194 3no2_A Uncharacterized protein 98.7 1.2E-06 4.1E-11 96.7 24.7 181 266-484 3-197 (276)
195 1qks_A Cytochrome CD1 nitrite 98.7 5.2E-06 1.8E-10 101.0 32.5 109 228-346 165-283 (567)
196 3e5z_A Putative gluconolactona 98.7 2.6E-06 8.9E-11 94.3 27.5 196 258-488 28-252 (296)
197 1rwi_B Serine/threonine-protei 98.7 1.5E-06 5.1E-11 94.4 24.4 129 224-362 113-245 (270)
198 3sjl_D Methylamine dehydrogena 98.7 1.6E-06 5.5E-11 99.5 25.5 258 25-348 83-373 (386)
199 3dsm_A Uncharacterized protein 98.6 1.7E-05 5.8E-10 89.6 31.2 252 239-529 16-301 (328)
200 3dsm_A Uncharacterized protein 98.6 9.7E-06 3.3E-10 91.6 28.3 224 228-484 52-303 (328)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 98.6 9.4E-06 3.2E-10 90.1 26.7 227 223-483 22-300 (314)
202 1xip_A Nucleoporin NUP159; bet 98.6 1.6E-06 5.5E-11 99.9 19.5 119 223-362 42-174 (388)
203 1xip_A Nucleoporin NUP159; bet 98.6 1.1E-06 3.7E-11 101.3 17.9 174 259-515 39-232 (388)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 98.5 3.3E-05 1.1E-09 85.6 28.9 107 223-338 176-299 (314)
205 2qc5_A Streptogramin B lactona 98.5 0.00012 4.2E-09 80.0 33.1 252 24-362 24-283 (300)
206 3c75_H MADH, methylamine dehyd 98.5 1.1E-05 3.7E-10 94.2 25.3 255 24-345 122-409 (426)
207 2qc5_A Streptogramin B lactona 98.5 0.00015 5.1E-09 79.4 33.0 232 223-488 24-265 (300)
208 2mad_H Methylamine dehydrogena 98.5 0.00023 7.7E-09 82.0 34.4 290 27-388 28-356 (373)
209 3iuj_A Prolyl endopeptidase; h 98.5 4.3E-06 1.5E-10 104.8 21.2 234 224-488 134-411 (693)
210 3g4e_A Regucalcin; six bladed 98.4 5.7E-05 2E-09 83.7 26.6 142 226-380 20-178 (297)
211 3g4e_A Regucalcin; six bladed 98.4 7.1E-05 2.4E-09 83.0 26.3 96 261-362 153-253 (297)
212 2ghs_A AGR_C_1268P; regucalcin 98.3 0.00016 5.5E-09 81.4 28.1 142 225-381 55-209 (326)
213 3hrp_A Uncharacterized protein 98.3 0.00014 4.7E-09 84.9 26.6 242 222-480 134-408 (409)
214 3iuj_A Prolyl endopeptidase; h 98.2 4.7E-05 1.6E-09 95.3 22.9 196 254-486 125-363 (693)
215 1mda_H Methylamine dehydrogena 98.2 4.1E-05 1.4E-09 87.7 18.9 77 262-348 269-356 (368)
216 2qe8_A Uncharacterized protein 98.1 0.00026 9E-09 80.2 24.8 126 220-348 18-164 (343)
217 3hrp_A Uncharacterized protein 98.1 0.00051 1.7E-08 80.1 27.0 209 258-488 132-360 (409)
218 2ghs_A AGR_C_1268P; regucalcin 98.1 0.00042 1.4E-08 77.9 25.5 95 261-362 183-283 (326)
219 2qe8_A Uncharacterized protein 98.1 6.7E-05 2.3E-09 85.2 19.0 115 228-362 176-302 (343)
220 3dr2_A Exported gluconolactona 98.0 0.00035 1.2E-08 77.6 22.9 130 223-362 49-199 (305)
221 3dr2_A Exported gluconolactona 98.0 0.001 3.5E-08 73.8 24.8 94 261-371 49-147 (305)
222 3sjl_D Methylamine dehydrogena 98.0 0.0048 1.7E-07 70.7 30.6 275 261-570 37-361 (386)
223 3c75_H MADH, methylamine dehyd 97.9 0.008 2.7E-07 70.0 31.5 271 266-571 82-401 (426)
224 3q7m_A Lipoprotein YFGL, BAMB; 97.9 0.0081 2.8E-07 68.4 31.2 251 267-569 102-375 (376)
225 4a2l_A BT_4663, two-component 97.9 0.15 5E-06 64.5 51.4 243 222-489 313-578 (795)
226 2hz6_A Endoplasmic reticulum t 97.9 7.8E-06 2.7E-10 94.1 4.8 178 267-484 8-194 (369)
227 4a2l_A BT_4663, two-component 97.8 0.21 7.2E-06 63.0 48.0 375 25-490 220-622 (795)
228 1yiq_A Quinohemoprotein alcoho 97.7 0.0019 6.5E-08 80.5 24.4 83 261-344 239-344 (689)
229 1mda_H Methylamine dehydrogena 97.4 0.016 5.5E-07 66.1 24.3 93 241-338 47-158 (368)
230 3q7m_A Lipoprotein YFGL, BAMB; 97.4 0.047 1.6E-06 61.9 27.9 104 268-389 239-344 (376)
231 1kb0_A Quinohemoprotein alcoho 97.4 0.027 9.3E-07 69.9 27.4 61 278-348 457-517 (677)
232 3hxj_A Pyrrolo-quinoline quino 97.3 0.011 3.6E-07 65.6 21.2 108 261-388 141-250 (330)
233 1fwx_A Nitrous oxide reductase 97.3 0.0035 1.2E-07 75.1 17.5 235 228-485 99-434 (595)
234 2hz6_A Endoplasmic reticulum t 97.3 3.9E-05 1.3E-09 88.3 0.6 176 229-423 8-194 (369)
235 1kb0_A Quinohemoprotein alcoho 97.3 0.04 1.4E-06 68.3 27.4 124 259-389 315-514 (677)
236 1yiq_A Quinohemoprotein alcoho 97.3 0.019 6.6E-07 71.4 24.4 62 277-348 454-515 (689)
237 3ei3_A DNA damage-binding prot 97.3 0.37 1.3E-05 63.1 37.1 70 22-97 514-590 (1158)
238 1k3i_A Galactose oxidase precu 97.1 0.037 1.3E-06 68.4 24.4 115 218-340 185-325 (656)
239 2xe4_A Oligopeptidase B; hydro 97.1 0.052 1.8E-06 68.2 26.0 110 223-339 178-305 (751)
240 2ece_A 462AA long hypothetical 97.0 0.2 6.8E-06 58.0 27.6 66 259-326 323-399 (462)
241 1fwx_A Nitrous oxide reductase 97.0 0.011 3.6E-07 70.9 17.1 69 260-338 280-361 (595)
242 1npe_A Nidogen, entactin; glyc 96.8 0.7 2.4E-05 49.3 31.5 94 258-362 168-262 (267)
243 3v9f_A Two-component system se 96.7 2.2 7.5E-05 53.5 47.4 259 222-512 366-644 (781)
244 2xe4_A Oligopeptidase B; hydro 96.7 0.045 1.5E-06 68.8 20.5 96 255-362 170-282 (751)
245 2ece_A 462AA long hypothetical 96.6 0.084 2.9E-06 61.1 20.3 207 263-481 88-351 (462)
246 3nol_A Glutamine cyclotransfer 96.6 0.18 6.2E-06 54.1 21.0 188 258-473 43-245 (262)
247 3hxj_A Pyrrolo-quinoline quino 96.5 0.05 1.7E-06 60.0 17.6 283 228-571 29-323 (330)
248 2iwa_A Glutamine cyclotransfer 96.5 0.23 7.9E-06 53.7 21.7 114 261-389 25-142 (266)
249 2fp8_A Strictosidine synthase; 96.5 0.38 1.3E-05 53.2 24.3 97 261-362 23-138 (322)
250 1npe_A Nidogen, entactin; glyc 96.4 0.88 3E-05 48.5 26.3 123 230-362 48-178 (267)
251 1kv9_A Type II quinohemoprotei 96.4 0.45 1.5E-05 58.7 26.9 84 261-345 234-340 (668)
252 2iwa_A Glutamine cyclotransfer 96.3 0.74 2.5E-05 49.7 24.5 150 223-389 25-188 (266)
253 1k3i_A Galactose oxidase precu 96.3 0.11 3.8E-06 64.1 20.5 72 261-340 190-276 (656)
254 3mbr_X Glutamine cyclotransfer 96.3 1.4 4.7E-05 46.8 25.5 105 229-346 30-141 (243)
255 3nok_A Glutaminyl cyclase; bet 96.2 0.5 1.7E-05 50.7 21.8 105 229-346 64-172 (268)
256 2fp8_A Strictosidine synthase; 96.0 1.8 6.1E-05 47.6 26.6 110 223-339 189-314 (322)
257 2xbg_A YCF48-like protein; pho 95.9 2.7 9.3E-05 46.5 31.0 122 255-390 160-286 (327)
258 3nok_A Glutaminyl cyclase; bet 95.9 0.3 1E-05 52.5 18.3 111 230-347 106-219 (268)
259 1kv9_A Type II quinohemoprotei 95.9 1.7 5.8E-05 53.5 27.9 72 268-346 117-195 (668)
260 2p4o_A Hypothetical protein; p 95.8 2.7 9.4E-05 45.8 27.3 70 261-341 36-107 (306)
261 3v9f_A Two-component system se 95.3 8.5 0.00029 48.0 51.5 212 257-490 312-532 (781)
262 2ism_A Putative oxidoreductase 95.2 3.2 0.00011 46.6 25.2 65 256-327 267-334 (352)
263 1w6s_A Methanol dehydrogenase 95.0 4 0.00014 49.4 26.6 78 262-347 111-200 (599)
264 3tc9_A Hypothetical hydrolase; 94.9 6.8 0.00023 45.2 27.2 128 223-362 141-281 (430)
265 3nol_A Glutamine cyclotransfer 94.8 0.25 8.7E-06 53.0 13.4 112 229-347 96-210 (262)
266 3mbr_X Glutamine cyclotransfer 94.7 0.88 3E-05 48.3 17.0 147 229-391 74-224 (243)
267 3qqz_A Putative uncharacterize 94.5 5.9 0.0002 42.2 27.5 172 208-401 26-202 (255)
268 2ad6_A Methanol dehydrogenase 94.4 3.5 0.00012 49.7 23.9 61 277-347 443-503 (571)
269 2ad6_A Methanol dehydrogenase 94.4 8.3 0.00029 46.3 27.1 37 259-296 304-343 (571)
270 2p4o_A Hypothetical protein; p 94.3 7.3 0.00025 42.3 28.0 110 222-339 35-148 (306)
271 3ei3_A DNA damage-binding prot 94.1 20 0.00069 46.8 49.5 64 506-571 844-912 (1158)
272 2xbg_A YCF48-like protein; pho 93.8 9.8 0.00033 41.9 31.1 137 208-362 79-216 (327)
273 3v64_C Agrin; beta propeller, 93.7 11 0.00037 42.1 28.5 95 258-362 117-214 (349)
274 1w6s_A Methanol dehydrogenase 93.7 15 0.00051 44.3 27.5 30 266-296 318-350 (599)
275 3v65_B Low-density lipoprotein 93.5 12 0.00042 42.2 27.4 94 259-362 161-257 (386)
276 3a9g_A Putative uncharacterize 93.4 12 0.00042 41.7 29.5 66 256-326 258-330 (354)
277 3pbp_A Nucleoporin NUP82; beta 93.2 0.67 2.3E-05 53.0 13.2 74 25-98 71-158 (452)
278 1flg_A Protein (quinoprotein e 92.6 22 0.00076 42.6 30.6 67 278-347 291-364 (582)
279 3v65_B Low-density lipoprotein 91.1 24 0.00081 39.8 27.4 98 255-362 114-213 (386)
280 4hw6_A Hypothetical protein, I 89.6 34 0.0012 39.3 23.6 128 223-362 143-284 (433)
281 2ism_A Putative oxidoreductase 88.5 34 0.0012 37.9 26.5 100 222-326 34-153 (352)
282 2p9w_A MAL S 1 allergenic prot 87.7 26 0.00089 38.7 19.2 79 261-343 17-117 (334)
283 3amr_A 3-phytase; beta-propell 86.9 43 0.0015 37.3 20.8 197 228-484 38-266 (355)
284 3tc9_A Hypothetical hydrolase; 86.4 51 0.0017 37.7 26.3 146 257-418 137-298 (430)
285 3pbp_A Nucleoporin NUP82; beta 86.4 13 0.00046 42.4 16.2 176 267-486 31-217 (452)
286 3v64_C Agrin; beta propeller, 86.0 46 0.0016 36.8 28.0 98 255-362 71-170 (349)
287 1cru_A Protein (soluble quinop 84.8 31 0.0011 39.9 19.3 18 310-327 146-163 (454)
288 3das_A Putative oxidoreductase 84.2 56 0.0019 36.3 26.6 58 25-84 37-99 (347)
289 3sre_A PON1, serum paraoxonase 83.9 59 0.002 36.2 25.1 70 259-337 223-297 (355)
290 2vpj_A Kelch-like protein 12; 83.8 49 0.0017 35.2 21.4 66 463-529 206-277 (301)
291 3qqz_A Putative uncharacterize 82.3 54 0.0019 34.7 25.9 215 23-283 30-249 (255)
292 1flg_A Protein (quinoprotein e 80.5 6.6 0.00022 47.3 11.5 61 277-347 465-525 (582)
293 2xn4_A Kelch-like protein 2; s 80.4 64 0.0022 34.3 21.1 65 463-528 204-274 (302)
294 3ii7_A Kelch-like protein 7; p 80.3 65 0.0022 34.3 21.6 65 463-528 200-270 (306)
295 3mkq_B Coatomer subunit alpha; 80.1 2.8 9.5E-05 42.0 6.6 57 864-927 5-61 (177)
296 2g8s_A Glucose/sorbosone dehyd 79.2 82 0.0028 34.8 26.3 63 258-326 272-341 (353)
297 4hw6_A Hypothetical protein, I 77.5 1E+02 0.0036 35.1 25.7 58 258-326 140-200 (433)
298 3s25_A Hypothetical 7-bladed b 77.3 31 0.0011 37.5 14.8 89 226-326 152-241 (302)
299 3m0c_C LDL receptor, low-densi 76.6 1.6E+02 0.0054 36.7 30.9 95 258-362 472-569 (791)
300 3a9g_A Putative uncharacterize 75.9 21 0.00072 39.8 13.2 77 256-339 28-115 (354)
301 2p9w_A MAL S 1 allergenic prot 74.7 58 0.002 35.9 15.8 78 261-339 67-169 (334)
302 3sov_A LRP-6, low-density lipo 74.1 1E+02 0.0036 33.4 23.7 94 258-361 36-132 (318)
303 4gq2_M Nucleoporin NUP120; bet 72.5 1.7E+02 0.0058 37.2 21.9 39 259-298 238-276 (950)
304 2k85_A Glucocorticoid receptor 70.1 2.9 0.0001 34.3 2.9 41 1067-1107 8-49 (69)
305 3p5b_L Low density lipoprotein 69.9 1.5E+02 0.005 33.3 27.9 100 255-362 110-213 (400)
306 3sre_A PON1, serum paraoxonase 69.8 1.4E+02 0.0048 33.1 23.3 62 261-326 116-183 (355)
307 3sov_A LRP-6, low-density lipo 68.8 1.3E+02 0.0046 32.5 27.5 94 259-362 81-177 (318)
308 2g8s_A Glucose/sorbosone dehyd 68.7 1.1E+02 0.0039 33.6 17.1 25 367-391 190-217 (353)
309 1ijq_A LDL receptor, low-densi 68.3 1.3E+02 0.0046 32.3 28.5 98 257-362 30-131 (316)
310 1tl2_A L10, protein (tachylect 67.1 55 0.0019 34.0 12.5 61 261-332 92-157 (236)
311 3m0c_C LDL receptor, low-densi 67.1 2.5E+02 0.0084 34.9 28.9 100 255-362 422-525 (791)
312 1cru_A Protein (soluble quinop 66.9 66 0.0023 37.1 15.1 68 257-325 27-97 (454)
313 3kya_A Putative phosphatase; s 66.8 80 0.0027 36.9 15.6 106 223-337 143-277 (496)
314 4gq2_M Nucleoporin NUP120; bet 65.5 52 0.0018 42.0 15.0 39 308-346 236-274 (950)
315 3das_A Putative oxidoreductase 65.3 84 0.0029 34.9 14.8 81 255-338 30-116 (347)
316 1n7d_A LDL receptor, low-densi 63.4 30 0.001 42.5 11.8 52 277-338 385-437 (699)
317 3kya_A Putative phosphatase; s 63.4 2.2E+02 0.0076 33.1 26.6 75 266-343 389-480 (496)
318 1n7d_A LDL receptor, low-densi 61.2 29 0.00098 42.7 11.1 130 223-362 410-551 (699)
319 1zgk_A Kelch-like ECH-associat 58.3 1.9E+02 0.0065 30.6 22.3 65 463-528 215-285 (308)
320 1tl2_A L10, protein (tachylect 57.8 52 0.0018 34.2 10.3 25 69-97 42-66 (236)
321 3p5b_L Low density lipoprotein 57.1 2.4E+02 0.0083 31.5 33.5 95 258-362 160-257 (400)
322 2vpj_A Kelch-like protein 12; 56.4 2E+02 0.0067 30.2 22.3 27 463-489 253-285 (301)
323 2uvk_A YJHT; unknown function, 47.1 3E+02 0.01 29.6 22.0 68 460-528 249-340 (357)
324 1ijq_A LDL receptor, low-densi 45.0 3.1E+02 0.011 29.2 31.2 93 260-362 80-175 (316)
325 4fhn_B Nucleoporin NUP120; pro 44.9 60 0.002 42.4 10.6 38 309-346 239-276 (1139)
326 4a0p_A LRP6, LRP-6, low-densit 44.7 4.7E+02 0.016 31.2 29.5 93 259-362 82-177 (628)
327 3s94_A LRP-6, low-density lipo 43.8 4.8E+02 0.017 31.0 40.9 80 258-347 172-252 (619)
328 3kci_A Probable E3 ubiquitin-p 42.1 3.9E+02 0.013 29.5 19.4 119 210-337 160-292 (389)
329 2xn4_A Kelch-like protein 2; s 40.9 3.3E+02 0.011 28.4 20.4 27 463-489 251-283 (302)
330 1xi4_A Clathrin heavy chain; a 40.1 4E+02 0.014 35.4 16.4 77 21-99 105-189 (1630)
331 3ii7_A Kelch-like protein 7; p 39.1 3.6E+02 0.012 28.2 21.0 27 463-489 247-279 (306)
332 4fhn_B Nucleoporin NUP120; pro 36.8 2.1E+02 0.007 37.2 13.8 37 261-298 242-278 (1139)
333 3s94_A LRP-6, low-density lipo 35.0 6.4E+02 0.022 29.9 25.8 95 258-362 85-182 (619)
334 3s25_A Hypothetical 7-bladed b 32.1 4.9E+02 0.017 27.7 21.2 70 261-342 108-180 (302)
335 4a0p_A LRP6, LRP-6, low-densit 31.3 7.3E+02 0.025 29.5 29.3 97 255-361 35-133 (628)
336 2be1_A Serine/threonine-protei 31.1 4.8E+02 0.017 28.5 13.7 67 269-343 11-81 (339)
337 3sbq_A Nitrous-oxide reductase 31.0 40 0.0014 39.8 4.9 106 218-327 322-454 (638)
338 3qhy_B Beta-lactamase inhibito 28.8 5.3E+02 0.018 27.1 15.2 207 221-478 34-242 (282)
339 3kci_A Probable E3 ubiquitin-p 28.6 6.2E+02 0.021 27.8 23.5 269 23-338 54-345 (389)
340 2ao6_B NCOA-2, 14-MER fragment 28.0 37 0.0013 21.5 2.1 19 762-780 3-21 (26)
341 2xzh_A Clathrin heavy chain 1; 27.8 6.4E+02 0.022 27.7 28.5 117 223-348 71-198 (365)
342 2be1_A Serine/threonine-protei 27.7 1.4E+02 0.0047 33.0 8.4 116 222-347 12-139 (339)
343 1suu_A DNA gyrase subunit A; t 25.5 6.4E+02 0.022 26.9 22.6 110 221-338 115-231 (312)
344 1bpo_A Protein (clathrin); cla 24.3 8.5E+02 0.029 27.9 27.4 117 223-348 70-197 (494)
345 2wg3_C Hedgehog-interacting pr 23.3 6.3E+02 0.021 28.8 13.4 62 257-318 14-79 (463)
346 1xi4_A Clathrin heavy chain; a 21.3 1.6E+03 0.054 30.0 17.8 64 261-338 70-134 (1630)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.6e-37 Score=385.85 Aligned_cols=458 Identities=12% Similarity=0.067 Sum_probs=320.3
Q ss_pred ceEEEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCc
Q 001202 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1124)
Q Consensus 22 ~~iv~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~ 101 (1124)
...++|||||+++|++++++++||+.. ....+..+. .+.+.+.+++|||||++||+++.||+|+|||+..+..
T Consensus 21 ~~~~~~spdg~~l~~~~~~~v~l~~~~-~~~~~~~~~------~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~ 93 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCNGTSVYTVPVG-SLTDTEIYT------EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 93 (611)
T ss_dssp CCCCEECTTSSEEEEEETTEEEEEETT-CSSCCEEEC------CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred eeEEeeCCCCCEEEeCCCCEEEEecCC-CcccCeEec------CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc
Confidence 345789999999999988899999995 333333332 2346688999999999999999999999999864321
Q ss_pred eeecCCCCCCCcceeeEEEEeeeeeecccccceEEE--EeecCCeEEEEecCC--cEEEEeccCccccceeeccCCCCcc
Q 001202 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDG--SLYSISWKGEFYGAFELVHSSNDSS 177 (1124)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~d~~~llv~t~dg--~v~~~~Wd~~~~~~~~l~~~~~~~~ 177 (1124)
.. ...+.++...|.+ +.++++.+++++.+. ...++.|+.... .
T Consensus 94 ~~---------------------~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~--~---------- 140 (611)
T 1nr0_A 94 IL---------------------KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS--N---------- 140 (611)
T ss_dssp CE---------------------EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB--C----------
T ss_pred ee---------------------eEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCC--c----------
Confidence 10 0011223334555 445667777766542 345566874211 1
Q ss_pred ccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCc-EEEEEecCCceEeeeccccce---e
Q 001202 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDK---E 253 (1124)
Q Consensus 178 ~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~-~~~~~~~d~~i~~wd~~~~~~---~ 253 (1124)
..+.+|...|.++.|+ |+|. .+++++.|+++++|+..+.+. +
T Consensus 141 ------------------------~~l~gh~~~v~~v~f~----------p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l 186 (611)
T 1nr0_A 141 ------------------------GNLTGQARAMNSVDFK----------PSRPFRIISGSDDNTVAIFEGPPFKFKSTF 186 (611)
T ss_dssp ------------------------BCCCCCSSCEEEEEEC----------SSSSCEEEEEETTSCEEEEETTTBEEEEEE
T ss_pred ------------------------ceecCCCCCceEEEEC----------CCCCeEEEEEeCCCeEEEEECCCCeEeeee
Confidence 0234667788777766 6775 588999999999999876543 3
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEE
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~ 332 (1124)
.+|.+.| +++|+|++++||+|+.||+|++||+.+ ++....+..... ...+|.++|.+++|+|||++||+|+.|++|+
T Consensus 187 ~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~-g~~~~~~~~~~~-~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~ 264 (611)
T 1nr0_A 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDSL-KNVAHSGSVFGLTWSPDGTKIASASADKTIK 264 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCTTS-SSCSSSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ccccCceEEEEECCCCCEEEEEECCCcEEEEECCC-CcEeeeeccccc-cccccCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 7899999 999999999999999999999999987 666665531000 0114999999999999999999999999999
Q ss_pred EEEcCCCeeeEEe-------------------------------------------ccCCcCceeeeEEcCCCCCCcceE
Q 001202 333 VWSVSGCRLMSTI-------------------------------------------RQISLSSISSPIVKPNQDCKYEPL 369 (1124)
Q Consensus 333 vWdv~~~~l~~tl-------------------------------------------~~h~~~~V~s~~~sp~~~~~~~~l 369 (1124)
+||+.++++..++ .+| ...|++++|+|++ +.+
T Consensus 265 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh-~~~v~~l~~spdg----~~l 339 (611)
T 1nr0_A 265 IWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH-NKAITALSSSADG----KTL 339 (611)
T ss_dssp EEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC-SSCEEEEEECTTS----SEE
T ss_pred EEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC-CCCEEEEEEeCCC----CEE
Confidence 9999887665443 355 6789999999998 888
Q ss_pred EEee---eEEEEeCCCCeEEEEe-cCCcceEEEEec--cceEEeeccCCceeeeEeeecCCe-------------E-EEe
Q 001202 370 MSGT---SMMQWDEYGYRLYAIE-EGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDR-------------L-LVV 429 (1124)
Q Consensus 370 ~sg~---~i~~W~~~~~~l~~~~-~~~~~~v~~~s~--~k~~~s~s~d~~v~~w~l~~~~~~-------------l-~l~ 429 (1124)
++++ ++++|+..++++.... .+|...|..+.+ ...+++++.|+++++|+...+... . ...
T Consensus 340 ~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (611)
T 1nr0_A 340 FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 419 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEE
T ss_pred EEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEE
Confidence 8887 8999999998876654 567778855555 667899999999999986432210 0 000
Q ss_pred ecC--------CCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEE
Q 001202 430 QSE--------DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSK 500 (1124)
Q Consensus 430 ~~~--------~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~ 500 (1124)
..+ +.....|...+ ... ..|...+.+++|||||++||+|+.||.+ +||+.+++........+. -.|.
T Consensus 420 s~dg~~~~~~~~~~v~~~~~~~-~~~-~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~--~~v~ 495 (611)
T 1nr0_A 420 SADGDIAVAACYKHIAIYSHGK-LTE-VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP--AEIT 495 (611)
T ss_dssp CTTSSCEEEEESSEEEEEETTE-EEE-EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECS--SCEE
T ss_pred eCCCcEEEEEeCceEEEEeCCc-eee-eecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCC--CceE
Confidence 000 01111233222 112 2367789999999999999999999999 999988765432222222 2467
Q ss_pred EEEecC--CEEEEEEEecCCCeEEEEEeeCCCCCCcceEEE--ee-cCCc--cEEEEeeCCEEEEEEcCCeEEEEEEE
Q 001202 501 GLLWLG--KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCR--KS-LLAK--PIVMDVYEDYILVTYRPFDVHIFHVK 571 (1124)
Q Consensus 501 gl~W~~--~~liv~~~~~~~~~~elrly~~~~ld~~~~l~~--~~-l~s~--~l~l~~~~~~llv~~~d~~i~l~~~~ 571 (1124)
.++|.+ .++++++. +..+++|+...- ..+... .. +... .+.+++.+.+|+.++.|+.|++|++.
T Consensus 496 ~v~fspdg~~las~s~-----d~~v~~w~~~~~--~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 496 SVAFSNNGAFLVATDQ-----SRKVIPYSVANN--FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp EEEECTTSSEEEEEET-----TSCEEEEEGGGT--TEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEECCCCCEEEEEcC-----CCCEEEEEcCCC--CceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECC
Confidence 788864 46666532 337899987420 111111 01 2222 24567778888889999999999874
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.8e-36 Score=370.34 Aligned_cols=484 Identities=16% Similarity=0.189 Sum_probs=336.7
Q ss_pred CCCceE--EEEeeCCeEEEEEcC-CcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEE
Q 001202 19 PSSQQI--IYFKVNNGLLLIASP-CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFK 95 (1124)
Q Consensus 19 ~~~~~i--v~fS~dg~llA~~~~-~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~ 95 (1124)
+|..+| ++|||||++||++++ ++|+|||.. +..+..+.. +.+.+.+++|||||++||+++.||.|++||
T Consensus 14 GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~--~~~~~~l~g------h~~~V~~l~fspdg~~las~~~d~~i~vWd 85 (577)
T 2ymu_A 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTG------HSSSVWGVAFSPDGQTIASASDDKTVKLWN 85 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--SCEEEEEEC------CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC--CCEEEEEeC------CCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 355555 889999999999875 579999974 344443321 357789999999999999999999999999
Q ss_pred eeecCceeecCCCCC---------CCcce-----------------------------eeEEEEeeee------------
Q 001202 96 VQITEKSIQIGGKQP---------SGLFF-----------------------------IKISLVLNEQ------------ 125 (1124)
Q Consensus 96 v~~~~~~~~~~~~~~---------~~~~~-----------------------------~~~~~~~~~~------------ 125 (1124)
+.. .......+|.. .+..+ ....+.+...
T Consensus 86 ~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 164 (577)
T 2ymu_A 86 RNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 164 (577)
T ss_dssp TTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred CCC-CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceeccccccee
Confidence 642 11111111110 00000 0000100000
Q ss_pred ---------eecccccceEEE--EeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCC-cccc
Q 001202 126 ---------LPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG-LASV 193 (1124)
Q Consensus 126 ---------~~~~~~~~~v~~--i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~q-l~s~ 193 (1124)
.........+.+ +.+++..+++++.||.+++|+-+++.. ..+ ..+...+..+.|+++++ +.++
T Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~--~~~---~~~~~~v~~~~~s~dg~~l~~~ 239 (577)
T 2ymu_A 165 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL--QTL---TGHSSSVRGVAFSPDGQTIASA 239 (577)
T ss_dssp EECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEE--EEE---ECCSSCEEEEEECTTSSCEEEE
T ss_pred ccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEE--EEE---ecCCCCEEEEEECCCCCEEEEE
Confidence 000111223333 445677899999999998854332221 122 23445677778888776 4454
Q ss_pred cCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccc--eecCCCCeE-EEEEccCCCE
Q 001202 194 DTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--KELGSGDAV-CASIAPEQQI 270 (1124)
Q Consensus 194 ~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~--~~~gh~~~v-~va~spdg~l 270 (1124)
+.++... . |......+..+..+......++++|||+.+++++.++++++|+..... ...+|.+.+ +++|+|+++.
T Consensus 240 ~~d~~i~-~-w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 317 (577)
T 2ymu_A 240 SDDKTVK-L-WNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 317 (577)
T ss_dssp ETTSCEE-E-ECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSE
T ss_pred eCCCEEE-E-EeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCE
Confidence 4443322 2 223333444444344444567778999999999999999999864321 237899999 9999999999
Q ss_pred EEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCc
Q 001202 271 LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL 350 (1124)
Q Consensus 271 LAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~ 350 (1124)
+|+|+.||+|++|+... ..+..+. + |..+|.+++|+|||++|++|+.||.+++|+.. ++++.++.+| .
T Consensus 318 l~t~~~d~~i~~w~~~~--~~~~~~~----~----~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~~~-~ 385 (577)
T 2ymu_A 318 IASASDDKTVKLWNRNG--QHLQTLT----G----HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH-S 385 (577)
T ss_dssp EEEEETTSCEEEEETTS--CEEEEEC----C----CSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEECC-S
T ss_pred EEEEeCCCeEEEEeCCC--CeeEEEe----C----CCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEecCC-C
Confidence 99999999999999864 4445554 4 89999999999999999999999999999965 4678888887 7
Q ss_pred CceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEE--Eec-cceEEeeccCCceeeeEeeecCC
Q 001202 351 SSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGED 424 (1124)
Q Consensus 351 ~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~--~s~-~k~~~s~s~d~~v~~w~l~~~~~ 424 (1124)
..|.+++|+|++ +.+++|+ .+.+|+.. ++++....+|...|.. |++ ++.+++++.|+++++|+. .+..
T Consensus 386 ~~v~~~~~s~dg----~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~ 459 (577)
T 2ymu_A 386 SSVRGVAFSPDG----QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQL 459 (577)
T ss_dssp SCEEEEEECTTS----SCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCE
T ss_pred CCeEEEEECCCC----CEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCE
Confidence 889999999998 8888876 89999964 5677777888888854 444 788999999999999984 2221
Q ss_pred eEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEE
Q 001202 425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLL 503 (1124)
Q Consensus 425 ~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~ 503 (1124)
...+.+|..+|++++|||||++||+|+.||.+ +||......+.+.. +. -.|..++
T Consensus 460 --------------------~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~--h~--~~v~~l~ 515 (577)
T 2ymu_A 460 --------------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG--HS--SSVRGVA 515 (577)
T ss_dssp --------------------EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEEC--CS--SCEEEEE
T ss_pred --------------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeC--CC--CCEEEEE
Confidence 34567899999999999999999999999999 99975544344432 22 2367788
Q ss_pred ecC--CEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEee-cCCcc--EEEEeeCCEEEEEEcCCeEEEEE
Q 001202 504 WLG--KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKS-LLAKP--IVMDVYEDYILVTYRPFDVHIFH 569 (1124)
Q Consensus 504 W~~--~~liv~~~~~~~~~~elrly~~~~ld~~~~l~~~~-l~s~~--l~l~~~~~~llv~~~d~~i~l~~ 569 (1124)
|.+ .++++++. + ..|++|+.. . ..+.+.. +..++ +.+++.+++|+.+..|+.|++|+
T Consensus 516 ~s~dg~~l~s~~~---d--g~v~lwd~~---~-~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 516 FSPDGQTIASASD---D--KTVKLWNRN---G-QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ECTTSSCEEEEET---T--SEEEEECTT---S-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EcCCCCEEEEEEC---c--CEEEEEeCC---C-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 864 46666633 2 379999863 2 2333322 23333 44567778888889999999995
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.9e-35 Score=365.56 Aligned_cols=438 Identities=10% Similarity=0.110 Sum_probs=299.0
Q ss_pred eEEEEeeCCeEEEEEc-CCcEEEEecCCCc-eeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCC----CeEEEEEe
Q 001202 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHK-VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS----LYLHIFKV 96 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~-~~~l~IW~~~~~~-~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d----g~l~i~~v 96 (1124)
..++|||||++||+++ +++|+|||..... .....+. .+.+.+.+++|+|||+.||+++.+ +.+++|+.
T Consensus 63 ~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~------~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~ 136 (611)
T 1nr0_A 63 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP------VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 136 (611)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE------CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT
T ss_pred EEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeec------ccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC
Confidence 4489999999999987 5689999984221 1122221 134778999999999999998865 47888874
Q ss_pred eecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEe--ecCC-eEEEEecCCcEEEEeccCccccceeeccCC
Q 001202 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SDNK-HMLLGLSDGSLYSISWKGEFYGAFELVHSS 173 (1124)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~d~~-~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~ 173 (1124)
.. ... .+.++...|.+++ +++. .+++++.|+.+++ |+.......
T Consensus 137 ~~--~~~-----------------------~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~l--wd~~~~~~~------ 183 (611)
T 1nr0_A 137 GT--SNG-----------------------NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI--FEGPPFKFK------ 183 (611)
T ss_dssp CC--BCB-----------------------CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE--EETTTBEEE------
T ss_pred CC--Ccc-----------------------eecCCCCCceEEEECCCCCeEEEEEeCCCeEEE--EECCCCeEe------
Confidence 21 100 1223334455544 4444 4888999999988 453322111
Q ss_pred CCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee
Q 001202 174 NDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE 253 (1124)
Q Consensus 174 ~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~ 253 (1124)
..+.+|...|.++.|+ |||+++++++.|+++++|+..+++..
T Consensus 184 ----------------------------~~l~~H~~~V~~v~fs----------pdg~~las~s~D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 184 ----------------------------STFGEHTKFVHSVRYN----------PDGSLFASTGGDGTIVLYNGVDGTKT 225 (611)
T ss_dssp ----------------------------EEECCCSSCEEEEEEC----------TTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred ----------------------------eeeccccCceEEEEEC----------CCCCEEEEEECCCcEEEEECCCCcEe
Confidence 0234567778766665 88999999999999999998766542
Q ss_pred ----c------CCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccC----------------------
Q 001202 254 ----L------GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW---------------------- 300 (1124)
Q Consensus 254 ----~------gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~---------------------- 300 (1124)
. +|.+.| +++|+|++++||+|+.||+|++||+.+ ++...++.....
T Consensus 226 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~ 304 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 304 (611)
T ss_dssp EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC-CceeeeecCCCCccceeEEEEEcCCEEEEEeCCC
Confidence 1 799999 999999999999999999999999987 655544431100
Q ss_pred -------------CCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcc
Q 001202 301 -------------GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE 367 (1124)
Q Consensus 301 -------------g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~ 367 (1124)
....+|.++|.+++|+|||++|++|+.|++|++||+.++.+...+...+...|.+++|++++
T Consensus 305 ~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~----- 379 (611)
T 1nr0_A 305 FINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG----- 379 (611)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-----
T ss_pred cEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC-----
Confidence 00024999999999999999999999999999999999887777644337889999999764
Q ss_pred eEEEee---eEEEEeCCCCeE--------------EE-Ee-c------------------------CCcceE--EEEec-
Q 001202 368 PLMSGT---SMMQWDEYGYRL--------------YA-IE-E------------------------GSSERV--LIFSF- 401 (1124)
Q Consensus 368 ~l~sg~---~i~~W~~~~~~l--------------~~-~~-~------------------------~~~~~v--~~~s~- 401 (1124)
.+++++ ++++|+..+..+ .. .. . .+...+ +++++
T Consensus 380 ~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spd 459 (611)
T 1nr0_A 380 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND 459 (611)
T ss_dssp CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTT
T ss_pred cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCC
Confidence 455554 788887654211 00 00 0 012223 45566
Q ss_pred cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEc
Q 001202 402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 402 ~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~ 480 (1124)
++.+++++.|+++++|++..+... .... .+|..+|.+++|||||++||+++.|+.+ +|++
T Consensus 460 g~~lasgs~D~~v~lwd~~~~~~~------------------~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~ 520 (611)
T 1nr0_A 460 KQFVAVGGQDSKVHVYKLSGASVS------------------EVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV 520 (611)
T ss_dssp SCEEEEEETTSEEEEEEEETTEEE------------------EEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEG
T ss_pred CCEEEEeCCCCeEEEEEccCCcee------------------eeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEc
Confidence 889999999999999997543211 0122 5788999999999999999999999999 9999
Q ss_pred CC-CcEEEecCcCceeeeEEEEEEecCC--EEEEEEEecCCCeEEEEEeeCCCCCCcceEEEe-ec-CCcc--EEEEeeC
Q 001202 481 RQ-KKWRVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK-SL-LAKP--IVMDVYE 553 (1124)
Q Consensus 481 ~s-g~wk~f~~~~~e~~~~v~gl~W~~~--~liv~~~~~~~~~~elrly~~~~ld~~~~l~~~-~l-~s~~--l~l~~~~ 553 (1124)
.+ ++.... .....+.-.|..++|.++ ++++++. +..+++|+.+.... ...... .+ ...+ +..++.+
T Consensus 521 ~~~~~~~~~-~~~~~H~~~V~~v~fspdg~~lasgs~-----D~~v~lW~~~~~~~-~~~~~~~~h~~~~v~~v~fs~d~ 593 (611)
T 1nr0_A 521 ANNFELAHT-NSWTFHTAKVACVSWSPDNVRLATGSL-----DNSVIVWNMNKPSD-HPIIIKGAHAMSSVNSVIWLNET 593 (611)
T ss_dssp GGTTEESCC-CCCCCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETTCTTS-CCEEETTSSTTSCEEEEEEEETT
T ss_pred CCCCceeee-eeeeecccceeEEEECCCCCEEEEEEC-----CCcEEEEECCCccc-ccchhhccCcccCeeEEEEcCCC
Confidence 87 432111 011112234778899754 6666643 23799998852211 111111 11 1222 3345544
Q ss_pred CEEEEEEcCCeEEEEEE
Q 001202 554 DYILVTYRPFDVHIFHV 570 (1124)
Q Consensus 554 ~~llv~~~d~~i~l~~~ 570 (1124)
. ++.+..|+.|++|++
T Consensus 594 ~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 594 T-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp E-EEEEETTSCEEEEEC
T ss_pred E-EEEecCCCCEEEEec
Confidence 4 777889999999986
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.3e-33 Score=344.41 Aligned_cols=446 Identities=16% Similarity=0.199 Sum_probs=314.4
Q ss_pred CCceE--EEEeeCCeEEEEEcC-CcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEe
Q 001202 20 SSQQI--IYFKVNNGLLLIASP-CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (1124)
Q Consensus 20 ~~~~i--v~fS~dg~llA~~~~-~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v 96 (1124)
+..+| ++|||||++||+++. ++|+|||.. +..+..+.. +.+.+.+++|+|||+.|++++.++.+++|+.
T Consensus 56 h~~~V~~l~fspdg~~las~~~d~~i~vWd~~--~~~~~~~~~------~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~ 127 (577)
T 2ymu_A 56 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTG------HSSSVRGVAFSPDGQTIASASDDKTVKLWNR 127 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETT--SCEEEEECC------CSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEECC--CCEEEEEEC------CCCCEEEEEECCCCCEEEEEcCCCceeeccc
Confidence 34444 789999999999775 689999974 334443321 3467889999999999999999999999986
Q ss_pred eecCceee-----------cCCC------------------C--------CCCcceeeEEEEeee---------------
Q 001202 97 QITEKSIQ-----------IGGK------------------Q--------PSGLFFIKISLVLNE--------------- 124 (1124)
Q Consensus 97 ~~~~~~~~-----------~~~~------------------~--------~~~~~~~~~~~~~~~--------------- 124 (1124)
........ .... . .....+..+.+.+.+
T Consensus 128 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w 207 (577)
T 2ymu_A 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 207 (577)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred ccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEE
Confidence 42211000 0000 0 000011111111111
Q ss_pred ----e--eecccccceEEEEe--ecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCC-cccccC
Q 001202 125 ----Q--LPFAEKGLSVSNIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG-LASVDT 195 (1124)
Q Consensus 125 ----~--~~~~~~~~~v~~i~--~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~q-l~s~~~ 195 (1124)
+ ..+.++...|.+++ +++..+++++.||.+++|+-+++.. .. ...+...+..+.|+++++ +.+.+.
T Consensus 208 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~--~~---~~~~~~~v~~v~~~~d~~~l~~~~~ 282 (577)
T 2ymu_A 208 NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL--QT---LTGHSSSVNGVAFRPDGQTIASASD 282 (577)
T ss_dssp CTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE--EE---ECCCSSCEEEEEECTTSSEEEEEET
T ss_pred eCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEE--EE---EecCCCCEEEEEEcCCCCEEEEEeC
Confidence 0 12233445566554 5677899999999998854332211 11 223455677777888776 444444
Q ss_pred CCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce--ecCCCCeE-EEEEccCCCEEE
Q 001202 196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILA 272 (1124)
Q Consensus 196 ~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~--~~gh~~~v-~va~spdg~lLA 272 (1124)
++... . |......+..+.-+......++++|||+.+++++.|+++++|+...... ..+|...+ +++|+|++++||
T Consensus 283 d~~i~-~-w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 360 (577)
T 2ymu_A 283 DKTVK-L-WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIA 360 (577)
T ss_dssp TSCEE-E-EETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCEEE-E-EeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEE
Confidence 33222 1 2222333333333333445677789999999999999999999754432 36888888 999999999999
Q ss_pred EEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCc
Q 001202 273 VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS 352 (1124)
Q Consensus 273 sGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~ 352 (1124)
+|+.||+|++|+.. ++.+.++. + |.++|.+++|+|||++||+|+.|+.|++||.. ++++.++.+| ...
T Consensus 361 ~~~~dg~v~~~~~~--~~~~~~~~----~----~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~-~~~ 428 (577)
T 2ymu_A 361 SASDDKTVKLWNRN--GQLLQTLT----G----HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH-SSS 428 (577)
T ss_dssp EEETTSEEEEEETT--CCEEEEEE----C----CSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECC-SSC
T ss_pred EEeCCCEEEEEcCC--CCEEEEec----C----CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCC-CCC
Confidence 99999999999964 56666666 5 99999999999999999999999999999975 4667888888 788
Q ss_pred eeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEE--EEec-cceEEeeccCCceeeeEeeecCCeE
Q 001202 353 ISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRL 426 (1124)
Q Consensus 353 V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~--~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l 426 (1124)
|++++|+|++ ..+++++ ++++|+.. ++++....+|...|. +|++ ++.+++++.|+++++|+. .+..
T Consensus 429 v~~~~~s~d~----~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~-- 500 (577)
T 2ymu_A 429 VWGVAFSPDD----QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQL-- 500 (577)
T ss_dssp EEEEEECTTS----SEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCE--
T ss_pred eEEEEECCCC----CEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCE--
Confidence 9999999998 7888876 89999975 466677778888885 4555 889999999999999993 2222
Q ss_pred EEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEec
Q 001202 427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL 505 (1124)
Q Consensus 427 ~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~ 505 (1124)
...+.+|..+|++++|||||++||+|+.||.+ +||........+.. |. -.|.++.|.
T Consensus 501 ------------------~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~--h~--~~v~~~~fs 558 (577)
T 2ymu_A 501 ------------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG--HS--SSVWGVAFS 558 (577)
T ss_dssp ------------------EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEEC--CS--SCEEEEEEC
T ss_pred ------------------EEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcC--CC--CCEEEEEEc
Confidence 45677899999999999999999999999999 99975544444322 22 247778886
Q ss_pred --CCEEEEEEEecCCCeEEEEEee
Q 001202 506 --GKIIVVCNYIDSSNTYELLFYP 527 (1124)
Q Consensus 506 --~~~liv~~~~~~~~~~elrly~ 527 (1124)
+.++++++. + ..|++|+
T Consensus 559 ~dg~~l~s~~~---D--~~i~~Wd 577 (577)
T 2ymu_A 559 PDGQTIASASS---D--KTVKLWN 577 (577)
T ss_dssp TTSSCEEEEET---T--SCEEEEC
T ss_pred CCCCEEEEEeC---C--CEEEEeC
Confidence 457777643 2 2688885
No 5
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4e-32 Score=347.61 Aligned_cols=651 Identities=16% Similarity=0.184 Sum_probs=393.2
Q ss_pred ceEEEEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecC
Q 001202 22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (1124)
Q Consensus 22 ~~iv~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~ 100 (1124)
...++|||||+++|+++ +++|.||+.. .+..+..+.. +.+.+.+++|+|||+.||+++.+|.|++|++..+.
T Consensus 16 v~~i~~sp~~~~la~~~~~g~v~iwd~~-~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 88 (814)
T 3mkq_A 16 VKGIDFHPTEPWVLTTLYSGRVEIWNYE-TQVEVRSIQV------TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE 88 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETT-TTEEEEEEEC------CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEECC-CCceEEEEec------CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 34488999999999977 4589999995 5555554431 35778899999999999999999999999987543
Q ss_pred ceeecCCCCCCCcceeeEEEEeeeeeecccccceEEE--EeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccc
Q 001202 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (1124)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~ 178 (1124)
.... +.++...|.+ +.+++..+++++.||.+++|+++.......
T Consensus 89 ~~~~-----------------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~----------- 134 (814)
T 3mkq_A 89 KVVD-----------------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ----------- 134 (814)
T ss_dssp EEEE-----------------------EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE-----------
T ss_pred EEEE-----------------------EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE-----------
Confidence 2111 1122334444 445677899999999999977654311110
Q ss_pred cccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEec-CCcEEEEEecCCceEeeecccccee----
Q 001202 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKIDKE---- 253 (1124)
Q Consensus 179 i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~-dG~~~~~~~~d~~i~~wd~~~~~~~---- 253 (1124)
....+...|.++.|+ | +|+.+++++.|+++++|+...+...
T Consensus 135 ------------------------~~~~~~~~v~~~~~~----------p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 180 (814)
T 3mkq_A 135 ------------------------TFEGHEHFVMCVAFN----------PKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180 (814)
T ss_dssp ------------------------EEECCSSCEEEEEEE----------TTEEEEEEEEETTSEEEEEETTCSSCSEEEE
T ss_pred ------------------------EEcCCCCcEEEEEEE----------cCCCCEEEEEeCCCeEEEEECCCCcceeEEe
Confidence 123455667666665 5 7888888999999999998655332
Q ss_pred cCCCCeE-EEEEcc--CCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCc
Q 001202 254 LGSGDAV-CASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (1124)
Q Consensus 254 ~gh~~~v-~va~sp--dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~ 330 (1124)
.+|...+ +++|+| ++.++++|+.||+|++||+.+ +....++. + |.+.|.+++|+|+|..|++|+.||.
T Consensus 181 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~----~----~~~~v~~~~~~~~~~~l~~~~~dg~ 251 (814)
T 3mkq_A 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-KSCVATLE----G----HMSNVSFAVFHPTLPIIISGSEDGT 251 (814)
T ss_dssp CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT-TEEEEEEE----C----CSSCEEEEEECSSSSEEEEEETTSC
T ss_pred cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC-CcEEEEEc----C----CCCCEEEEEEcCCCCEEEEEeCCCe
Confidence 3444677 999999 999999999999999999987 77777776 5 8999999999999999999999999
Q ss_pred EEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee--eEEEEeCCCCeEEEEecCCcceEEEEec-cceEEe
Q 001202 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLN 407 (1124)
Q Consensus 331 I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s 407 (1124)
|++||+.++....++..+ ...+.+++|+|++. ...+++|. .+..|+..... ....+++ ++.+++
T Consensus 252 v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~g~~~~~ 318 (814)
T 3mkq_A 252 LKIWNSSTYKVEKTLNVG-LERSWCIATHPTGR--KNYIASGFDNGFTVLSLGNDE----------PTLSLDPVGKLVWS 318 (814)
T ss_dssp EEEEETTTCSEEEEECCS-SSSEEEEEECTTCG--GGEEEEEETTEEEEEECSCCS----------CCEEECSSSEEEEE
T ss_pred EEEEECCCCcEEEEeecC-CCcEEEEEEccCCC--ceEEEEEeCCCEEEEEcCCCC----------ceeEECCCCCEEEE
Confidence 999999999999999887 67899999999971 11355554 66777654432 2344444 444555
Q ss_pred eccCCceeeeEeeecCCeEEEeecCCCccceeeecc-cceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcE
Q 001202 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN-LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (1124)
Q Consensus 408 ~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~-~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~w 485 (1124)
++.+..........-.. ..+.. ...... .......+...+++++|||||+++|+++ +|.+ +|++...+-
T Consensus 319 ~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~ 389 (814)
T 3mkq_A 319 GGKNAAASDIFTAVIRG------NEEVE--QDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN 389 (814)
T ss_dssp CCTTSCTTCEEEEECCS------CCCCC--SSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE
T ss_pred Ccccccceeeeeeeccc------ccccc--cCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc
Confidence 44433211100000000 00000 000000 1123345666789999999999999999 7777 999764332
Q ss_pred EEecCcCceeeeEEEEEEecC--CEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEeecCCccEEEEeeC---CEEEEEE
Q 001202 486 RVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYE---DYILVTY 560 (1124)
Q Consensus 486 k~f~~~~~e~~~~v~gl~W~~--~~liv~~~~~~~~~~elrly~~~~ld~~~~l~~~~l~s~~l~l~~~~---~~llv~~ 560 (1124)
... -.+..+.|.+ +.++++ +....+++|....-....+ ..+..++.+ +.++.+.
T Consensus 390 ~~~--------~~i~~~~~spdg~~la~~-----~~~g~v~l~~~~~~~~~~v--------~~~~~s~dg~~~~~l~~~~ 448 (814)
T 3mkq_A 390 KAF--------GKCQDFVWGPDSNSYALI-----DETGQIKYYKNFKEVTSWS--------VPMHSAIDRLFSGALLGVK 448 (814)
T ss_dssp EEE--------EECSEEEECTTSSCEEEE-----CTTCCEEEEETTEECTTCC--------CCCSSCCCEEECSSSEEEE
T ss_pred cCC--------CceEEEEEeCCCCeEEEE-----eCCCcEEEEECCCCccceE--------EcCCcCccceecceEEEEe
Confidence 211 2355788974 455555 2334688886521110000 111223332 4677778
Q ss_pred cCCeEEEEEEEEecccCCCCCCcEEEEEEEEEeeeccccCCceEEEccCCCccccccCCCCCCccccccc------CCce
Q 001202 561 RPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAR------EPAR 634 (1124)
Q Consensus 561 ~d~~i~l~~~~~~~~~~~~~~~~i~l~~~~~i~i~~~~~hp~~v~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 634 (1124)
.|+.|++|++. .++ .++++. .|+. .+.+. | + ++-++.. ....
T Consensus 449 ~d~~v~~~d~~-~~~------------~~~~~~-----~~~~---~v~~s-~-d---------g~~la~~~~~~~~~~~~ 496 (814)
T 3mkq_A 449 SDGFVYFFDWD-NGT------------LVRRID-----VNAK---DVIWS-D-N---------GELVMIVNTNSNGDEAS 496 (814)
T ss_dssp ETTEEEEECTT-TCC------------EEEEES-----SCEE---EEEEC-T-T---------SSEEEEEECCCSSCSCS
T ss_pred cCCEEEEEECC-cCc------------EEEEEe-----cCCC---EEEEc-C-C---------CCEEEEEEcCcccCCce
Confidence 89999999864 111 112221 1111 12221 0 0 0111111 1112
Q ss_pred eEEEeeCCEEEEE-------ecCCC---cceeecc---cee-EEEEcCCCCcccccccceeeEEEECCCCcEEeecCCCC
Q 001202 635 CLILRANGELSLL-------DLDDG---RERELTD---SVE-LFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGV 700 (1124)
Q Consensus 635 ~lil~~~g~l~~l-------~~~~~---~~~~l~~---~VE-~~w~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~~~~~ 700 (1124)
.+++..+.+.... .++.+ ....+.+ .|- ..|. . -.++|....-+++|.+.+.
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~------~--------~~~i~~t~~~~~~~~~~~~ 562 (814)
T 3mkq_A 497 GYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWV------G--------DVFIFTTATNRLNYFVGGK 562 (814)
T ss_dssp EEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEE------T--------TEEEEECTTSEEEEEETTE
T ss_pred EEEEEechHHhhhhhhccCCccccchhhheeeeeEeccEEEeeEEe------C--------CEEEEEcCCCeEEEEeCCe
Confidence 2333222111000 00000 0011111 110 0121 1 1244444333455432111
Q ss_pred CCCCcccccccCCcccccCceeeeeeccCCcEEEEEeeeeeeccCcCccceeccCcccccHHHHHHHHHhcccHHHHHH-
Q 001202 701 DPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALR- 779 (1124)
Q Consensus 701 ~~~~~~~~~~~~~~l~~~~~~yPl~i~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~~ll~~~~~~~a~~- 779 (1124)
......++...|-+++.++...++.++.+... ..+.+. ...| .....+.+++.++|.+
T Consensus 563 ----------~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~------~~~~l~--~~~~---~~~~~~~~~~~~~a~~~ 621 (814)
T 3mkq_A 563 ----------TYNLAHYTKEMYLLGYLARDNKVYLADREVHV------YGYEIS--LEVL---EFQTLTLRGEIEEAIEN 621 (814)
T ss_dssp ----------EEEEEECSSCCEEEEEEGGGTEEEEECTTCCE------EEEECC--HHHH---HHHHHHHTTCHHHHHHH
T ss_pred ----------eEEEEECCccEEEEEEEecCCEEEEEcCCCCE------EEEEEC--cHHH---HHhHHHHhCCHHHHHHH
Confidence 11222345567777777777777766643111 112211 0110 0122444566666643
Q ss_pred HHHHcCCCCCchHHHHHHHHHHhhcccccccccccccCCc-cccchhhhHHHHHHHhHcCchhHHHHHhhcccccccchH
Q 001202 780 LAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIP-KRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWA 858 (1124)
Q Consensus 780 ~a~~~~~l~~F~h~LE~lLh~vle~e~~~~~~~~~~~~i~-~~~~~~~ll~~v~~fi~~f~~~l~ivv~caRKtE~~~W~ 858 (1124)
+.. .|+ . ..+.++++|++.. ++++...+.++..
T Consensus 622 ~l~----------------------------------~i~~~-----~~~~~~~~~l~~~-~~~~~a~~~~~~~------ 655 (814)
T 3mkq_A 622 VLP----------------------------------NVEGK-----DSLTKIARFLEGQ-EYYEEALNISPDQ------ 655 (814)
T ss_dssp TGG----------------------------------GCCCH-----HHHHHHHHHHHHT-TCHHHHHHHCCCH------
T ss_pred HHh----------------------------------cCCch-----HHHHHHHHHHHhC-CChHHheecCCCc------
Confidence 211 133 2 4668899999887 7788877777644
Q ss_pred HHHhhcCChHHHHHHHHhcCcHHHHhhHHhhhhhccCchhhHHHHHHHHHHHHhcccHhHHHHHHHhhhc
Q 001202 859 DLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLLR 928 (1124)
Q Consensus 859 ~LF~~~g~P~~Lf~~cl~~~~l~taa~yLivl~n~e~~~~~~~~a~~Ll~~al~~~~w~l~~eL~RFl~~ 928 (1124)
..-|+.+++.|+++.|..+..-+ .+.+.+.+|-++|++.+++++|.+..+=++.
T Consensus 656 ---------~~~f~~~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 656 ---------DQKFELALKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp ---------HHHHHHHHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred ---------chheehhhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 44499999999999998886533 2468899999999999999999998775543
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.4e-32 Score=333.17 Aligned_cols=460 Identities=9% Similarity=0.076 Sum_probs=315.0
Q ss_pred eEEEEeeCCeEEEEEcCCcEEEEecCCCc----eeEEEEeeChHHHhhhcc-eeEEEEec--CCcEEEEEeCCCeEEEEE
Q 001202 23 QIIYFKVNNGLLLIASPCHIELWSSSQHK----VRLGKYKRDSESVQREGE-NLQAVWSP--DTKLIAVVTSSLYLHIFK 95 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~~~~l~IW~~~~~~----~~l~~~~r~~~sl~~~G~-~~~v~wSP--Dg~~Lav~t~dg~l~i~~ 95 (1124)
..++|||||++||+++++.+.||+.. .+ ..+..+. .+.+. +.+++|+| ||++||+++.||.|++|+
T Consensus 22 ~~~~~spdg~~l~~~~~~~v~v~~~~-~~~~~~~~~~~~~------~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 22 THLSYDPTTNAIAYPCGKSAFVRCLD-DGDSKVPPVVQFT------GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCCEEETTTTEEEEEETTEEEEEECC-SSCCSSCSEEEEC------TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred eEEEECCCCCEEEEecCCeEEEEECC-CCCCccccceEEe------cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 34789999999999999999999996 44 3343332 23466 88999999 999999999999999999
Q ss_pred eeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEE--EeecCCeEEEEecCC--cEEEEeccCccccceeecc
Q 001202 96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDG--SLYSISWKGEFYGAFELVH 171 (1124)
Q Consensus 96 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~d~~~llv~t~dg--~v~~~~Wd~~~~~~~~l~~ 171 (1124)
+..+..... . .......+..+...|.+ +.+++..+++++.+. ...++.|+... ..
T Consensus 95 ~~~~~~~~~-------------~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~--~~---- 153 (615)
T 1pgu_A 95 WTFDKESNS-------------V--EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN--SL---- 153 (615)
T ss_dssp EEEEGGGTE-------------E--EEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC--EE----
T ss_pred CCCCccccc-------------c--cccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC--cc----
Confidence 975421000 0 00000112223334554 445677788887662 24445587321 11
Q ss_pred CCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCc-EEEEEecCCceEeeecccc
Q 001202 172 SSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKI 250 (1124)
Q Consensus 172 ~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~-~~~~~~~d~~i~~wd~~~~ 250 (1124)
..+..+...|.++.|+ |+|+ .+++++.|+.+++||..+.
T Consensus 154 ------------------------------~~~~~~~~~v~~~~~~----------~~~~~~l~~~~~d~~v~vwd~~~~ 193 (615)
T 1pgu_A 154 ------------------------------GEVSGHSQRINACHLK----------QSRPMRSMTVGDDGSVVFYQGPPF 193 (615)
T ss_dssp ------------------------------EECCSCSSCEEEEEEC----------SSSSCEEEEEETTTEEEEEETTTB
T ss_pred ------------------------------eeeecCCccEEEEEEC----------CCCCcEEEEEeCCCcEEEEeCCCc
Confidence 0133566678776666 6776 7888899999999998776
Q ss_pred cee---cCCCC---eE-EEEEccC-CCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEE
Q 001202 251 DKE---LGSGD---AV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF 322 (1124)
Q Consensus 251 ~~~---~gh~~---~v-~va~spd-g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~L 322 (1124)
+.. .+|.+ .+ +++|+|+ +++|++|+.||+|++||+.+ ++.+..+.... ..|.++|.+++|+ +|.+|
T Consensus 194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~----~~~~~~v~~~~~~-~~~~l 267 (615)
T 1pgu_A 194 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQ----EPVQGGIFALSWL-DSQKF 267 (615)
T ss_dssp EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCBTT----BCCCSCEEEEEES-SSSEE
T ss_pred ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCEeEEecccc----cccCCceEEEEEc-CCCEE
Confidence 543 67888 88 9999999 99999999999999999987 66666552100 0289999999999 99999
Q ss_pred EEEECCCcEEEEEcCCCeeeEEeccCC---cCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceE
Q 001202 323 AVGWKSRGLTVWSVSGCRLMSTIRQIS---LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV 396 (1124)
Q Consensus 323 asgs~Dg~I~vWdv~~~~l~~tl~~h~---~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v 396 (1124)
++++.||.|++||+.+++++.++..+. ...+.++.++ ++ ..+++|+ .+.+|+..+++......+|...|
T Consensus 268 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v 342 (615)
T 1pgu_A 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GN----GRIISLSLDGTLNFYELGHDEVLKTISGHNKGI 342 (615)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ET----TEEEEEETTSCEEEEETTEEEEEEEECCCSSCE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CC----CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCE
Confidence 999999999999999999988887652 3556777775 44 6677665 89999999888877777666555
Q ss_pred EEEec-----------------------------------cceEEeeccCCceeeeEeeecC------------------
Q 001202 397 LIFSF-----------------------------------GKCCLNRGVSGMTYARQVIYGE------------------ 423 (1124)
Q Consensus 397 ~~~s~-----------------------------------~k~~~s~s~d~~v~~w~l~~~~------------------ 423 (1124)
..+.+ ++.+++++.|+.+++|++..+.
T Consensus 343 ~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~ 422 (615)
T 1pgu_A 343 TALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAV 422 (615)
T ss_dssp EEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEE
T ss_pred EEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEE
Confidence 44433 5667777777777777765421
Q ss_pred ----CeEEEee-----------------------------cC-CCccceeeec--ccc-eeeccCCCceEEEEEccCCCE
Q 001202 424 ----DRLLVVQ-----------------------------SE-DTDELKILHL--NLP-VSYISQNWPVQHVAASKDGMF 466 (1124)
Q Consensus 424 ----~~l~l~~-----------------------------~~-~~~~~~w~~~--~~p-~~~~~~~~~I~~va~SpdG~~ 466 (1124)
..+.++. +. +.....|... +.. ..+.+|..+|.+++|||||++
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 502 (615)
T 1pgu_A 423 LTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY 502 (615)
T ss_dssp EETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE
T ss_pred EeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCE
Confidence 1111111 11 1111223221 111 445678999999999999999
Q ss_pred EEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecC------------CEEEEEEEecCCCeEEEEEeeCCCCCC
Q 001202 467 LAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG------------KIIVVCNYIDSSNTYELLFYPRYHLDQ 533 (1124)
Q Consensus 467 lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~------------~~liv~~~~~~~~~~elrly~~~~ld~ 533 (1124)
||+|+.||.+ +||+.+++...-....+ .-.+..+.|.+ .++++++. + ..|++|+.....
T Consensus 503 l~~~~~dg~i~iw~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~---d--g~i~iw~~~~~~- 574 (615)
T 1pgu_A 503 IAAGDVMGKILLYDLQSREVKTSRWAFR--TSKINAISWKPAEKGANEEEIEEDLVATGSL---D--TNIFIYSVKRPM- 574 (615)
T ss_dssp EEEEETTSCEEEEETTTTEEEECCSCCC--SSCEEEEEECCCC------CCSCCEEEEEET---T--SCEEEEESSCTT-
T ss_pred EEEcCCCCeEEEeeCCCCcceeEeecCC--CCceeEEEEcCccccccccccCCCEEEEEcC---C--CcEEEEECCCCc-
Confidence 9999999999 99999886432211112 23477888854 45555532 2 379999885221
Q ss_pred cceEEEee-cCCcc--EEEEeeCCEEEEEEcCCeEEEEEEE
Q 001202 534 SSLLCRKS-LLAKP--IVMDVYEDYILVTYRPFDVHIFHVK 571 (1124)
Q Consensus 534 ~~~l~~~~-l~s~~--l~l~~~~~~llv~~~d~~i~l~~~~ 571 (1124)
..+.... +...+ +.+++.+. ++....|+.+++|+++
T Consensus 575 -~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 575 -KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp -CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred -eechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 1222221 22333 45566666 7778999999999985
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.2e-33 Score=373.97 Aligned_cols=498 Identities=13% Similarity=0.121 Sum_probs=334.0
Q ss_pred CCceE--EEEeeCCeEEEEEcC-CcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEe
Q 001202 20 SSQQI--IYFKVNNGLLLIASP-CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (1124)
Q Consensus 20 ~~~~i--v~fS~dg~llA~~~~-~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v 96 (1124)
+...| ++|||||+++|+++. ++|+||+.. .+..+..+. .+.+.+.+++|+|||++||+++.||.|++||+
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~-~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAE-TGEKLLDIK------AHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEEC------CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECC-CCCEEEEec------cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 34444 789999999999774 689999996 555555443 24577899999999999999999999999999
Q ss_pred eecCceeecCCCCCCCcceeeEE---------------------EEeee---eeecccccceEEE--EeecCCeEEEEec
Q 001202 97 QITEKSIQIGGKQPSGLFFIKIS---------------------LVLNE---QLPFAEKGLSVSN--IVSDNKHMLLGLS 150 (1124)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~---~~~~~~~~~~v~~--i~~d~~~llv~t~ 150 (1124)
.++.......+|.. .+.++. |.... ...+.++...|.+ +.+++..+++++.
T Consensus 687 ~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSE---QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp TTCCEEEEEECCSS---CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred CCCceEEEEcCCCC---cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 76653222222221 111111 11111 1123344555665 4567788999999
Q ss_pred CCcEEEEeccCcccc-ceeec--------cCCCCccccccccccCCCCcccccCCCCe----------eecccCCCCceE
Q 001202 151 DGSLYSISWKGEFYG-AFELV--------HSSNDSSVAALSHHFPSNGLASVDTSGAF----------VSDHKFPISSAI 211 (1124)
Q Consensus 151 dg~v~~~~Wd~~~~~-~~~l~--------~~~~~~~~i~~i~fs~~~ql~s~~~~~~~----------~~~~~~~~~~~I 211 (1124)
||.+++|+....... ..... +.......+..+.|++++........+.. .......+...|
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v 843 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI 843 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence 999998655432110 00000 00001112333444444431111100000 000011223333
Q ss_pred EEEEecC--------------------------------CcceEEEEecCCcEEEEEecCCceEeeeccccce-------
Q 001202 212 IWLELCL--------------------------------PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK------- 252 (1124)
Q Consensus 212 ~~i~~s~--------------------------------~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~------- 252 (1124)
.++.|+| .....++++|||+.+++++.|+++++|+..+...
T Consensus 844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 923 (1249)
T 3sfz_A 844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923 (1249)
T ss_dssp CEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccc
Confidence 3333333 3335677789999999999999999998643100
Q ss_pred ---------------------------------ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeec
Q 001202 253 ---------------------------------ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1124)
Q Consensus 253 ---------------------------------~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~ 298 (1124)
...+...+ +++++|+++++|+|+.||.|++|++.+ +.....+.
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~-~~~~~~~~-- 1000 (1249)
T 3sfz_A 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGV-- 1000 (1249)
T ss_dssp EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT-TSCEEECC--
T ss_pred ceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC-Cceeeecc--
Confidence 01123456 999999999999999999999999987 66666555
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eE
Q 001202 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM 375 (1124)
Q Consensus 299 ~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i 375 (1124)
+ |.++|.+++|+|||++|++|+.||.|++||+.++.... +.+| ...|.+++++|++ . +++++ ++
T Consensus 1001 --~----h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~-~~~v~~~~~~~~~----~-l~~~~~dg~v 1067 (1249)
T 3sfz_A 1001 --G----HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAH-QETVKDFRLLQDS----R-LLSWSFDGTV 1067 (1249)
T ss_dssp --C----CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCC-SSCEEEEEECSSS----E-EEEEESSSEE
T ss_pred --c----CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecC-CCcEEEEEEcCCC----c-EEEEECCCcE
Confidence 4 99999999999999999999999999999999988664 3455 6789999999975 4 44444 89
Q ss_pred EEEeCCCCeEEEEecCCcceE--EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCC
Q 001202 376 MQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (1124)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~ 452 (1124)
.+|+..++++.....+|...| +++++ ++.+++++.|+++++|++..+.. ...+.+|.
T Consensus 1068 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~--------------------~~~l~~h~ 1127 (1249)
T 3sfz_A 1068 KVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP--------------------LHELKGHN 1127 (1249)
T ss_dssp EEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC--------------------SBCCCCCS
T ss_pred EEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce--------------------eeeeccCC
Confidence 999999999888888888888 55666 78899999999999999866544 45667899
Q ss_pred CceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEE-ecCcC-----ceeeeEEEEEEecCC--EEEEEEEecCCCeEEE
Q 001202 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV-FGDIT-----QEQKIQSKGLLWLGK--IIVVCNYIDSSNTYEL 523 (1124)
Q Consensus 453 ~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~-f~~~~-----~e~~~~v~gl~W~~~--~liv~~~~~~~~~~el 523 (1124)
.+|.+++|||||+++|+|+.||.+ +||+.+++... +.... ......+.+++|.++ +++++ + ..+
T Consensus 1128 ~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~-----~--g~v 1200 (1249)
T 3sfz_A 1128 GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA-----G--GYL 1200 (1249)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE-----S--SSE
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEEC-----C--CeE
Confidence 999999999999999999999999 99999876321 10000 111123667888754 55544 2 279
Q ss_pred EEeeCCCCCCcceEEEeecCCccEEEEeeCCEEEEEEcCCeEEEEEE
Q 001202 524 LFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHV 570 (1124)
Q Consensus 524 rly~~~~ld~~~~l~~~~l~s~~l~l~~~~~~llv~~~d~~i~l~~~ 570 (1124)
++|+...-..-.....+.-+-..+.+++.+..++++..||.+.+|++
T Consensus 1201 ~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1201 KWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp EEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred EEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 99987411100011111111234677788888988999999999975
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-30 Score=337.89 Aligned_cols=408 Identities=11% Similarity=0.053 Sum_probs=272.8
Q ss_pred ceEEEEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecC
Q 001202 22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (1124)
Q Consensus 22 ~~iv~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~ 100 (1124)
...++|+|||++||+++ +++|+||+.. ....+.. +.+.+.+.+++|+| |++|++++.||.|++||+..+.
T Consensus 20 V~~lafspdg~~lAsgs~Dg~I~lw~~~-~~~~~~~-------~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 20 PIAAAFDFTQNLLAIATVTGEVHIYGQQ-QVEVVIK-------LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEECST-TCEEEEE-------CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred cEEEEECCCCCEEEEEeCCCEEEEEeCC-CcEEEEE-------cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence 34589999999999987 4689999985 4332221 11346789999999 8899999999999999987542
Q ss_pred ceeecCCCCCCCcceeeEEEEeeeeeecccccceEEE--EeecCCeEEEEecCCcEEEEeccCccccceee-------cc
Q 001202 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFEL-------VH 171 (1124)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l-------~~ 171 (1124)
.. ..+ . ....|++ +.++++.+++|+.||.|++|+.+......+.+ ..
T Consensus 91 ~~-------------~~~----~-------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~ 146 (902)
T 2oaj_A 91 VL-------------TTV----F-------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFF 146 (902)
T ss_dssp EE-------------EEE----E-------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTC
T ss_pred EE-------------EEE----c-------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccc
Confidence 11 111 0 1123444 44677899999999999986655432211111 11
Q ss_pred CCCCccccccccccCCC--CcccccCCCCeeecccCCCCceEEEEEec------------------CCcceEEEEecCCc
Q 001202 172 SSNDSSVAALSHHFPSN--GLASVDTSGAFVSDHKFPISSAIIWLELC------------------LPMRLLFVLYSNGQ 231 (1124)
Q Consensus 172 ~~~~~~~i~~i~fs~~~--ql~s~~~~~~~~~~~~~~~~~~I~~i~~s------------------~~~~~~~~~s~dG~ 231 (1124)
...+...+..+.|+++. .+.++..++ .. .+.......+..+.++ ......++++|||+
T Consensus 147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg-~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~ 224 (902)
T 2oaj_A 147 PAARLSPIVSIQWNPRDIGTVLISYEYV-TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL 224 (902)
T ss_dssp SSSCCCCCCEEEEETTEEEEEEEECSSC-EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS
T ss_pred cccCCCCeEEEEEccCCCCEEEEEeCCC-cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC
Confidence 13355667778888753 244444433 23 4444444444444333 12346778889999
Q ss_pred EEEEEecCCceEeeeccccceec--------C-------------CCCeE-EEEEc----cCC-CEEEEEecC-----Ce
Q 001202 232 LMSCSVSKKGLKLAEFIKIDKEL--------G-------------SGDAV-CASIA----PEQ-QILAVGTRR-----GV 279 (1124)
Q Consensus 232 ~~~~~~~d~~i~~wd~~~~~~~~--------g-------------h~~~v-~va~s----pdg-~lLAsGs~D-----gt 279 (1124)
++++++.|+++++||..+++... + |...| +++|+ |++ .++++|+.| +.
T Consensus 225 ~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~ 304 (902)
T 2oaj_A 225 HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS 304 (902)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence 99999999999999987765431 2 34568 99995 443 567777655 25
Q ss_pred EEEEEcCC-----------------------------CC------------------------------ceeEEEeeccC
Q 001202 280 VELYDLAE-----------------------------SA------------------------------SLIRTVSLYDW 300 (1124)
Q Consensus 280 V~vwd~~~-----------------------------~~------------------------------~~~~~l~~~~~ 300 (1124)
+++|++.. .. ..+..+.+. -
T Consensus 305 v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~-~ 383 (902)
T 2oaj_A 305 LTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYP-S 383 (902)
T ss_dssp EEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETT-T
T ss_pred EEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECC-C
Confidence 66666310 00 000111000 0
Q ss_pred C---------------------------------------------CCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEE
Q 001202 301 G---------------------------------------------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1124)
Q Consensus 301 g---------------------------------------------~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWd 335 (1124)
| .-.+|...|.+++|+|||+.||+|+.|++|++||
T Consensus 384 g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd 463 (902)
T 2oaj_A 384 GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYD 463 (902)
T ss_dssp CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEE
T ss_pred CCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEE
Confidence 0 0012444455566789999999999999999999
Q ss_pred cCCCeee--EEe----c-----cCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCC------------------
Q 001202 336 VSGCRLM--STI----R-----QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY------------------ 383 (1124)
Q Consensus 336 v~~~~l~--~tl----~-----~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~------------------ 383 (1124)
+.++.+. ..+ . +| ...|++++|+|++ ..+++|+ ++++|+..++
T Consensus 464 ~~~g~~~~~~~~~~~l~~~~~~~h-~~~V~svafspdg----~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~ 538 (902)
T 2oaj_A 464 ASHGDIQDNASFEVNLSRTLNKAK-ELAVDKISFAAET----LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNF 538 (902)
T ss_dssp SSCCTTTTTBCEEEEHHHHTTCSS-SCCEEEEEEETTT----TEEEEEETTSCEEEEEEEECCC---------------C
T ss_pred CCCccccCCceEEeechhhcCCCC-CCceeEEEecCCC----CeEEEEecCcEEEEEEecCccccCccccCCCcccceee
Confidence 9887431 111 1 45 6789999999999 8899887 9999998765
Q ss_pred ---------------------------eEEEEecCCcceEE--EEec-cceEEeeccCCceeeeEeeecCCeEEEeecCC
Q 001202 384 ---------------------------RLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (1124)
Q Consensus 384 ---------------------------~l~~~~~~~~~~v~--~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~ 433 (1124)
+++....+|...|. +|++ + .+++++.|+++++|++... . + +..+
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~-~-~-~~~~-- 612 (902)
T 2oaj_A 539 RRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP-A-I-IYME-- 612 (902)
T ss_dssp CSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT-E-E-EEEE--
T ss_pred eeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC-e-E-EEEe--
Confidence 34667778998884 4555 7 9999999999999995321 1 1 1100
Q ss_pred Cccceeeecccceeec-cCCCceEEEEEc-----cCC---CEEEEEcCCCeE-EEEc---CCCcEE
Q 001202 434 TDELKILHLNLPVSYI-SQNWPVQHVAAS-----KDG---MFLAVAGLHGLI-LYDI---RQKKWR 486 (1124)
Q Consensus 434 ~~~~~w~~~~~p~~~~-~~~~~I~~va~S-----pdG---~~lAvag~dG~v-lwd~---~sg~wk 486 (1124)
++ ..+. +|...|++++|| ||| ++||+|+.||++ +||+ .+|++.
T Consensus 613 ---------~~-~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~ 668 (902)
T 2oaj_A 613 ---------NI-REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFD 668 (902)
T ss_dssp ---------EG-GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEE
T ss_pred ---------eh-hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEE
Confidence 01 2343 899999999999 886 899999999999 9999 777764
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.97 E-value=4e-30 Score=297.50 Aligned_cols=319 Identities=13% Similarity=0.109 Sum_probs=208.8
Q ss_pred EEEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeC------CCeEEEEEee
Q 001202 24 IIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS------SLYLHIFKVQ 97 (1124)
Q Consensus 24 iv~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~------dg~l~i~~v~ 97 (1124)
-+.+.+++.++...+++....|+.. +..+. .+.+.+.+|+|||||++||+++. ||.+++|+..
T Consensus 10 g~d~g~~~~~~~~~g~~~~~~w~~p-~~~p~----------~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~ 78 (357)
T 4g56_B 10 GVDLGTENLYFQSNGSSKGSAWGRP-VTAPA----------CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDP 78 (357)
T ss_dssp -----------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSC
T ss_pred CCCCCccceEEecCCCccccccCCC-CCCcc----------cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECC
Confidence 3556777777777777888999984 43321 24577889999999999999997 6778888765
Q ss_pred ecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecC-CeEEEEecCCcEEEEeccCccccceeeccCCCCc
Q 001202 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (1124)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~ 176 (1124)
.+...... . .....+...|.+++..+ +.+++++.||.|++ |+........
T Consensus 79 ~~~~~~~~--------~-----------~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~l--Wd~~~~~~~~-------- 129 (357)
T 4g56_B 79 EGAPNESL--------C-----------TAGVQTEAGVTDVAWVSEKGILVASDSGAVEL--WEILEKESLL-------- 129 (357)
T ss_dssp C---CGGG--------C-----------SEEEECSSCEEEEEEETTTEEEEEETTSCEEE--C--------C--------
T ss_pred CCCcceeE--------e-----------cccCCCCCCEEEEEEcCCCCEEEEECCCEEEE--eeccccceeE--------
Confidence 43211000 0 00112233466655433 46788889999987 6543322110
Q ss_pred cccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---
Q 001202 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--- 253 (1124)
Q Consensus 177 ~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~--- 253 (1124)
.......+|...|.++.|+ |||+.+++++.|+++++||..+++..
T Consensus 130 ----------------------~~~~~~~~h~~~V~~v~~s----------pdg~~l~sgs~dg~v~iwd~~~~~~~~~~ 177 (357)
T 4g56_B 130 ----------------------VNKFAKYEHDDIVKTLSVF----------SDGTQAVSGGKDFSVKVWDLSQKAVLKSY 177 (357)
T ss_dssp ----------------------CCCEEECCCSSCEEEEEEC----------SSSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ----------------------EEeeccCCCCCCEEEEEEC----------CCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 0001233567778776665 88999999999999999999877653
Q ss_pred cCCCCeE-EEEEccCCC-EEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCC-CEEEEEECCCc
Q 001202 254 LGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRG 330 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~-lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG-~~Lasgs~Dg~ 330 (1124)
.+|.+.+ +++|+|++. ++++|+.||+|++||+.+ ++....+.. ..|.+.|.+++|+|++ .+||+|+.|+.
T Consensus 178 ~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~~~~~------~~~~~~v~~v~~sp~~~~~la~g~~d~~ 250 (357)
T 4g56_B 178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPATRIDF------CASDTIPTSVTWHPEKDDTFACGDETGN 250 (357)
T ss_dssp CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBCBCCC------TTCCSCEEEEEECTTSTTEEEEEESSSC
T ss_pred cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC-Cceeeeeee------ccccccccchhhhhcccceEEEeecccc
Confidence 6899999 999999875 799999999999999987 554443321 1277889999999985 68999999999
Q ss_pred EEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEeecc
Q 001202 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGV 410 (1124)
Q Consensus 331 I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~ 410 (1124)
|++||+.++++..++.+| ...|++++|+|++ . +.+++++.
T Consensus 251 i~~wd~~~~~~~~~~~~~-~~~v~~l~~sp~~----~-----------------------------------~~lasgs~ 290 (357)
T 4g56_B 251 VSLVNIKNPDSAQTSAVH-SQNITGLAYSYHS----S-----------------------------------PFLASISE 290 (357)
T ss_dssp EEEEESSCGGGCEEECCC-SSCEEEEEECSSS----S-----------------------------------CCEEEEET
T ss_pred eeEEECCCCcEeEEEecc-ceeEEEEEEcCCC----C-----------------------------------CEEEEEeC
Confidence 999999999999999887 6778888888775 2 12356677
Q ss_pred CCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEcc-CCCEEEEEcCCCeE-EEEcCC
Q 001202 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 411 d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~Sp-dG~~lAvag~dG~v-lwd~~s 482 (1124)
|+++++|++..+.. ....+|..+|++++||| ||++||+||.||.| +|++.+
T Consensus 291 D~~i~iwd~~~~~~---------------------~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 291 DCTVAVLDADFSEV---------------------FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp TSCEEEECTTSCEE---------------------EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred CCEEEEEECCCCcE---------------------eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 77888887644321 23347889999999998 89999999999999 999865
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=3.1e-29 Score=285.57 Aligned_cols=274 Identities=14% Similarity=0.157 Sum_probs=229.3
Q ss_pred ccccceEEEEee------cCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeec
Q 001202 129 AEKGLSVSNIVS------DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSD 202 (1124)
Q Consensus 129 ~~~~~~v~~i~~------d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~ 202 (1124)
.++...|.+++. +++.+++|+.||.+++|+++....... .
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~----------------------------------~ 74 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ----------------------------------W 74 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE----------------------------------E
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee----------------------------------e
Confidence 456667777764 345788999999999977764321100 1
Q ss_pred ccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCC
Q 001202 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRG 278 (1124)
Q Consensus 203 ~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~Dg 278 (1124)
.+.+|...|.++.++ +++.++++++.|+++++||..+++.. .+|...+ +++|+|++++||+|+.||
T Consensus 75 ~l~gh~~~v~~~~~~----------~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg 144 (321)
T 3ow8_A 75 SLEGHQLGVVSVDIS----------HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVG 144 (321)
T ss_dssp EECCCSSCEEEEEEC----------SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTS
T ss_pred eeccCCCCEEEEEEC----------CCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence 234667778766665 78889999999999999999877653 4666777 999999999999999999
Q ss_pred eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEE
Q 001202 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (1124)
Q Consensus 279 tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~ 358 (1124)
+|++|++.+ +.....+. + |...|.+++|+|||++||+|+.||.|++||+.+++++.++.+| ...|.+++|
T Consensus 145 ~v~i~~~~~-~~~~~~~~----~----~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~ 214 (321)
T 3ow8_A 145 KVNIFGVES-GKKEYSLD----T----RGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH-AMPIRSLTF 214 (321)
T ss_dssp EEEEEETTT-CSEEEEEE----C----SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCCCEEEE
T ss_pred cEEEEEcCC-CceeEEec----C----CCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc-CCceeEEEE
Confidence 999999988 66666665 4 7888999999999999999999999999999999999999988 778999999
Q ss_pred cCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEE--ec-cceEEeeccCCceeeeEeeecCCeEEEeecC
Q 001202 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 432 (1124)
Q Consensus 359 sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~--s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~ 432 (1124)
+|++ +.+++|+ ++++|+..++++.....+|...|..+ ++ ++.+++++.|+++++|++..+..
T Consensus 215 spd~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~-------- 282 (321)
T 3ow8_A 215 SPDS----QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC-------- 282 (321)
T ss_dssp CTTS----CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--------
T ss_pred cCCC----CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE--------
Confidence 9998 8888887 89999999999999999999988554 44 78899999999999999765433
Q ss_pred CCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEc
Q 001202 433 DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 433 ~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~ 480 (1124)
..++.+|..+|.+++|+|+|++|+++|.||.+ +||.
T Consensus 283 ------------~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 283 ------------VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ------------EEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred ------------EEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 45677899999999999999999999999999 9996
No 11
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=3.4e-29 Score=287.30 Aligned_cols=279 Identities=15% Similarity=0.178 Sum_probs=210.9
Q ss_pred hhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceE--EEEeecCC
Q 001202 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNK 143 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~d~~ 143 (1124)
+.+.+.+++|+|||++|++++.||.|++||+..+...... ..+...| .++.+++.
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-----------------------~~~~~~v~~~~~s~~~~ 110 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-----------------------PLRSSWVMTCAYAPSGN 110 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-----------------------ECSSSCEEEEEECTTSS
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe-----------------------ecCCccEEEEEECCCCC
Confidence 4577899999999999999999999999998654321111 1112223 34566788
Q ss_pred eEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceE
Q 001202 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1124)
Q Consensus 144 ~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~ 223 (1124)
.+++++.||.+++|.......... ......+|...|.++.|
T Consensus 111 ~l~s~~~d~~v~iw~~~~~~~~~~--------------------------------~~~~~~~h~~~v~~~~~------- 151 (340)
T 1got_B 111 YVACGGLDNICSIYNLKTREGNVR--------------------------------VSRELAGHTGYLSCCRF------- 151 (340)
T ss_dssp EEEEEETTCEEEEEETTTCSBSCE--------------------------------EEEEEECCSSCEEEEEE-------
T ss_pred EEEEEeCCCeEEEEECccCCCcce--------------------------------eEEEecCCCccEEEEEE-------
Confidence 899999999999865443211000 00112345566655444
Q ss_pred EEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeecc
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~ 299 (1124)
+++++ +++++.|+++++||..+++.. .+|.+.| +++|+|+++++++|+.||+|++||+.+ +....++.
T Consensus 152 ---~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~--- 223 (340)
T 1got_B 152 ---LDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFT--- 223 (340)
T ss_dssp ---EETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEEC---
T ss_pred ---CCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-CeeEEEEc---
Confidence 46666 778889999999998877543 6899999 999999999999999999999999988 77777776
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccC-CcCceeeeEEcCCCCCCcceEEEeeeEEEE
Q 001202 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGTSMMQW 378 (1124)
Q Consensus 300 ~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h-~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W 378 (1124)
+ |.++|.+++|+|+|++|++|+.||+|++||+.++..+.++..+ ....|++++|+|++
T Consensus 224 -~----h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g---------------- 282 (340)
T 1got_B 224 -G----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG---------------- 282 (340)
T ss_dssp -C----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS----------------
T ss_pred -C----CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC----------------
Confidence 5 9999999999999999999999999999999988877666532 12345555555554
Q ss_pred eCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEE
Q 001202 379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (1124)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~v 458 (1124)
+.+++++.|+.+++|++..+.. ...+.+|..+|.++
T Consensus 283 ------------------------~~l~~g~~d~~i~vwd~~~~~~--------------------~~~~~~h~~~v~~~ 318 (340)
T 1got_B 283 ------------------------RLLLAGYDDFNCNVWDALKADR--------------------AGVLAGHDNRVSCL 318 (340)
T ss_dssp ------------------------SEEEEEETTSEEEEEETTTCCE--------------------EEEEECCSSCEEEE
T ss_pred ------------------------CEEEEECCCCeEEEEEcccCcE--------------------eeEeecCCCcEEEE
Confidence 3345666777888887654433 34566899999999
Q ss_pred EEccCCCEEEEEcCCCeE-EEE
Q 001202 459 AASKDGMFLAVAGLHGLI-LYD 479 (1124)
Q Consensus 459 a~SpdG~~lAvag~dG~v-lwd 479 (1124)
+|+|||++||+||.||.+ +||
T Consensus 319 ~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 319 GVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECTTSSCEEEEETTSCEEEEC
T ss_pred EEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999 996
No 12
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=5.5e-29 Score=293.48 Aligned_cols=277 Identities=13% Similarity=0.164 Sum_probs=231.4
Q ss_pred cccccceEEEEe--ecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccC
Q 001202 128 FAEKGLSVSNIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF 205 (1124)
Q Consensus 128 ~~~~~~~v~~i~--~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~ 205 (1124)
+.++...|+|+. +++..+++|+.||.|++|+++.. ... ..+.
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~--~~~----------------------------------~~l~ 147 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFE----------------------------------RTLK 147 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--CCC----------------------------------EEEC
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEE----------------------------------EEEe
Confidence 445666777765 45678999999999998654422 111 0234
Q ss_pred CCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEE
Q 001202 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVE 281 (1124)
Q Consensus 206 ~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~ 281 (1124)
+|...|.++.|+ ++|+++++++.|+++++||..+.+.. .+|.+.| +++|+|++.+|++|+.||+|+
T Consensus 148 ~h~~~V~~v~~~----------~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~ 217 (410)
T 1vyh_C 148 GHTDSVQDISFD----------HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217 (410)
T ss_dssp CCSSCEEEEEEC----------TTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred ccCCcEEEEEEc----------CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 566778776665 78999999999999999998876553 6899999 999999999999999999999
Q ss_pred EEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCC
Q 001202 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (1124)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~ 361 (1124)
+||+.+ +.++.++. + |.+.|.+++|+|||.+|++|+.|++|++||+.++.+..++.+| ...|.+++|+|+
T Consensus 218 ~wd~~~-~~~~~~~~----~----h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~ 287 (410)
T 1vyh_C 218 MWEVQT-GYCVKTFT----G----HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH-RHVVECISWAPE 287 (410)
T ss_dssp EEETTT-CCEEEEEE----C----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECCS
T ss_pred EEECCC-CcEEEEEe----C----CCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCC-CceEEEEEEcCc
Confidence 999988 77788777 5 9999999999999999999999999999999999999999988 788999999997
Q ss_pred CCC----------------CcceEEEee---eEEEEeCCCCeEEEEecCCcceEEE--Eec-cceEEeeccCCceeeeEe
Q 001202 362 QDC----------------KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQV 419 (1124)
Q Consensus 362 ~~~----------------~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~--~s~-~k~~~s~s~d~~v~~w~l 419 (1124)
... ....+++|+ ++++|+..+++++....+|...|.. +++ ++.+++++.|+++++|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp CGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred ccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 420 125688877 8999999999999999999988854 455 788999999999999998
Q ss_pred eecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEc
Q 001202 420 IYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 420 ~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~ 480 (1124)
..+.. ...+.+|..+|.+++|+|+|++||+||.||++ +|++
T Consensus 368 ~~~~~--------------------~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 368 KNKRC--------------------MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TTSCC--------------------CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCCce--------------------EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 65443 45677899999999999999999999999999 9986
No 13
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=8.2e-28 Score=322.61 Aligned_cols=425 Identities=15% Similarity=0.113 Sum_probs=305.2
Q ss_pred hhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEE--eecCC
Q 001202 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNK 143 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~d~~ 143 (1124)
+.+.+.+++|||||++||+++.||.|++|++.++..... +.++...|.++ .++++
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~-----------------------~~~h~~~v~~~~~s~~~~ 670 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD-----------------------IKAHEDEVLCCAFSSDDS 670 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-----------------------ECCCSSCEEEEEECTTSS
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE-----------------------eccCCCCEEEEEEecCCC
Confidence 356788999999999999999999999999976532111 12333445554 45677
Q ss_pred eEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceE
Q 001202 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1124)
Q Consensus 144 ~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~ 223 (1124)
.+++++.||.|++|++.. ..... .+..+...|.++.|+|.
T Consensus 671 ~l~s~~~d~~v~vwd~~~--~~~~~----------------------------------~~~~~~~~v~~~~~~~~---- 710 (1249)
T 3sfz_A 671 YIATCSADKKVKIWDSAT--GKLVH----------------------------------TYDEHSEQVNCCHFTNK---- 710 (1249)
T ss_dssp EEEEEETTSEEEEEETTT--CCEEE----------------------------------EEECCSSCEEEEEECSS----
T ss_pred EEEEEeCCCeEEEEECCC--CceEE----------------------------------EEcCCCCcEEEEEEecC----
Confidence 899999999998855442 21110 13356677887777753
Q ss_pred EEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeecc
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~ 299 (1124)
.++.++++++.|+++++||..+++.. .+|.+.+ +++|+|+++++++|+.||+|++||+.+ +.....+....
T Consensus 711 ----~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~ 785 (1249)
T 3sfz_A 711 ----SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS-ANERKSINVKR 785 (1249)
T ss_dssp ----SSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGG-TEEEEEEECCC
T ss_pred ----CCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCC-Ccccceecccc
Confidence 25678889999999999999877643 6899999 999999999999999999999999987 66555554322
Q ss_pred CC-----CCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee-
Q 001202 300 WG-----YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT- 373 (1124)
Q Consensus 300 ~g-----~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~- 373 (1124)
.. ....+...|.+++|+|||..+++++ ++.+.+|++.++.....+...+...+.+++|+|++ ..+++|.
T Consensus 786 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~----~~l~~~~~ 860 (1249)
T 3sfz_A 786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD----HLAVIALS 860 (1249)
T ss_dssp CC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST----TEEEEECS
T ss_pred cccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC----CEEEEEeC
Confidence 10 0112345799999999999999988 58999999999988888875447899999999998 7777766
Q ss_pred --eEEEEeCCCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCC------------------------
Q 001202 374 --SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGED------------------------ 424 (1124)
Q Consensus 374 --~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~------------------------ 424 (1124)
++.+|+..++.......+|...|..+.+ ++.+++++.|+++++|++.....
T Consensus 861 dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 940 (1249)
T 3sfz_A 861 QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAV 940 (1249)
T ss_dssp SSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEE
T ss_pred CCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEe
Confidence 8999999999999999999999855544 78899999999999998542100
Q ss_pred ---------------------------------eEEEeecCCCccceeee--cccceeeccCCCceEEEEEccCCCEEEE
Q 001202 425 ---------------------------------RLLVVQSEDTDELKILH--LNLPVSYISQNWPVQHVAASKDGMFLAV 469 (1124)
Q Consensus 425 ---------------------------------~l~l~~~~~~~~~~w~~--~~~p~~~~~~~~~I~~va~SpdG~~lAv 469 (1124)
+.++..+.+.....|.. .+....+.+|..+|.+++|+|||+++++
T Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1020 (1249)
T 3sfz_A 941 DNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1020 (1249)
T ss_dssp ESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEE
T ss_pred cCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEE
Confidence 00000000111112321 2233456689999999999999999999
Q ss_pred EcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEeecCCccEE
Q 001202 470 AGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIV 548 (1124)
Q Consensus 470 ag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~~~ld~~~~l~~~~l~s~~l~ 548 (1124)
|+.||.+ +||+.+++..... ...-.+..+.|.++..++++.. +..+++|+.........+..+.-+-..+.
T Consensus 1021 ~~~dg~i~vwd~~~~~~~~~~----~~~~~v~~~~~~~~~~l~~~~~----dg~v~vwd~~~~~~~~~~~~~~~~v~~~~ 1092 (1249)
T 3sfz_A 1021 SSEDSVIQVWNWQTGDYVFLQ----AHQETVKDFRLLQDSRLLSWSF----DGTVKVWNVITGRIERDFTCHQGTVLSCA 1092 (1249)
T ss_dssp ECSSSBEEEEETTTTEEECCB----CCSSCEEEEEECSSSEEEEEES----SSEEEEEETTTTCCCEEEECCSSCCCCEE
T ss_pred EcCCCEEEEEECCCCceEEEe----cCCCcEEEEEEcCCCcEEEEEC----CCcEEEEECCCCceeEEEcccCCcEEEEE
Confidence 9999999 9999998765332 1123467788876544443332 23799998852111111111111223466
Q ss_pred EEeeCCEEEEEEcCCeEEEEEEE
Q 001202 549 MDVYEDYILVTYRPFDVHIFHVK 571 (1124)
Q Consensus 549 l~~~~~~llv~~~d~~i~l~~~~ 571 (1124)
+++.+..+++++.|+.+++|++.
T Consensus 1093 ~s~d~~~l~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A 1093 ISSDATKFSSTSADKTAKIWSFD 1115 (1249)
T ss_dssp ECSSSSSCEEECCSSCCCEECSS
T ss_pred ECCCCCEEEEEcCCCcEEEEECC
Confidence 77788888889999999999864
No 14
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=2.9e-29 Score=288.91 Aligned_cols=226 Identities=14% Similarity=0.105 Sum_probs=185.7
Q ss_pred EEecCCcEEEEEecCCceEeeecccccee-------cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEe
Q 001202 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS 296 (1124)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~wd~~~~~~~-------~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~ 296 (1124)
++++|++ +++++.|+++++||..+++.. .+|.+.| +++|+|+|++||+|+.||+|++||+.+ ++.+.++.
T Consensus 89 ~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~-~~~~~~~~ 166 (344)
T 4gqb_B 89 TWVGERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLSSYR 166 (344)
T ss_dssp EEETTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEEC
T ss_pred EEeCCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-CcEEEEEc
Confidence 3347764 668889999999998876532 4899999 999999999999999999999999998 88888877
Q ss_pred eccCCCCCCCCCCeEEEEECCCCC-EEEEEECCCcEEEEEcCCCeeeEEeccC-CcCceeeeEEcCCCCCCcceEEEee-
Q 001202 297 LYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT- 373 (1124)
Q Consensus 297 ~~~~g~~~~h~g~V~~lawSPDG~-~Lasgs~Dg~I~vWdv~~~~l~~tl~~h-~~~~V~s~~~sp~~~~~~~~l~sg~- 373 (1124)
+ |++.|.+++|+|+|. .|++|+.|++|++||+.+++...++..+ +...+.+++|+|++. ..+++|+
T Consensus 167 ----~----h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~l~sg~~ 235 (344)
T 4gqb_B 167 ----A----HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQS---EVFVFGDE 235 (344)
T ss_dssp ----C----CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCT---TEEEEEET
T ss_pred ----C----cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCC---cceEEecc
Confidence 6 999999999999985 7899999999999999999888887542 245689999999652 5677776
Q ss_pred --eEEEEeCCCCeEEEEecCCcceEEE--Eec-c-ceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeeccccee
Q 001202 374 --SMMQWDEYGYRLYAIEEGSSERVLI--FSF-G-KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (1124)
Q Consensus 374 --~i~~W~~~~~~l~~~~~~~~~~v~~--~s~-~-k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~ 447 (1124)
++++|+..+++++....+|...|.. |++ + +.+++++.|+++++|++..++ ...
T Consensus 236 dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---------------------~~~ 294 (344)
T 4gqb_B 236 NGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---------------------LFR 294 (344)
T ss_dssp TSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---------------------EEE
T ss_pred CCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---------------------EEE
Confidence 8999999999999999999999855 444 4 468899999999999975432 234
Q ss_pred eccCCCceEEEEEccCCC-EEEEEcCCCeE-EEEcCCCc
Q 001202 448 YISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 448 ~~~~~~~I~~va~SpdG~-~lAvag~dG~v-lwd~~sg~ 484 (1124)
+.+|..+|++++|||+|+ .|++||.||+| +|++.+..
T Consensus 295 ~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 295 SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 568999999999999987 57799999999 99997753
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=2e-28 Score=281.64 Aligned_cols=302 Identities=14% Similarity=0.125 Sum_probs=210.6
Q ss_pred ceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEe--ecCCeEE
Q 001202 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SDNKHML 146 (1124)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~d~~~ll 146 (1124)
.+..++|+|||++||+++.||.|+||++..+.... ......++...|.+++ ++++.++
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~--------------------~~~~~~~h~~~v~~~~~sp~g~~l~ 77 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC--------------------KSVLSEGHQRTVRKVAWSPCGNYLA 77 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE--------------------EEEECSSCSSCEEEEEECTTSSEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee--------------------eeeeccccCCcEEEEEECCCCCEEE
Confidence 67899999999999999999999999987542100 0011123444565544 5678899
Q ss_pred EEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEE
Q 001202 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (1124)
Q Consensus 147 v~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~ 226 (1124)
+|+.||.+++|+.+....... ..+.+|...|.++.|+
T Consensus 78 s~s~D~~v~iw~~~~~~~~~~----------------------------------~~~~~h~~~v~~v~~s--------- 114 (345)
T 3fm0_A 78 SASFDATTCIWKKNQDDFECV----------------------------------TTLEGHENEVKSVAWA--------- 114 (345)
T ss_dssp EEETTSCEEEEEECCC-EEEE----------------------------------EEECCCSSCEEEEEEC---------
T ss_pred EEECCCcEEEEEccCCCeEEE----------------------------------EEccCCCCCceEEEEe---------
Confidence 999999999865442211110 1234667778776665
Q ss_pred ecCCcEEEEEecCCceEeeeccccc------eecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCc--eeEEEee
Q 001202 227 YSNGQLMSCSVSKKGLKLAEFIKID------KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESAS--LIRTVSL 297 (1124)
Q Consensus 227 s~dG~~~~~~~~d~~i~~wd~~~~~------~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~--~~~~l~~ 297 (1124)
|||+++++++.|+++++||..... ...+|...+ +++|+|++++||+|+.||+|++|+... +. +..++.
T Consensus 115 -p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~-~~~~~~~~~~- 191 (345)
T 3fm0_A 115 -PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE-DDWVCCATLE- 191 (345)
T ss_dssp -TTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET-TEEEEEEEEC-
T ss_pred -CCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC-CCEEEEEEec-
Confidence 789999999999999999986542 136899999 999999999999999999999999976 43 234444
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEE
Q 001202 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQ 377 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~ 377 (1124)
+ |.+.|.+++|+|||++||+|+.||+|++|+..... . ...+... .....
T Consensus 192 ---~----h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~-------~-~~~~~~~----------------~~~~~ 240 (345)
T 3fm0_A 192 ---G----HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPG-------N-EQGVACS----------------GSDPS 240 (345)
T ss_dssp ---C----CSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTT-------C-TTCCCCC-------------------CE
T ss_pred ---C----CCCceEEEEECCCCCEEEEEeCCCeEEEeccccCC-------C-Cccceee----------------ccCCc
Confidence 5 99999999999999999999999999999964321 0 0000000 00000
Q ss_pred EeCCCCeEEEEecC-CcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccc-eeeccCC
Q 001202 378 WDEYGYRLYAIEEG-SSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQN 452 (1124)
Q Consensus 378 W~~~~~~l~~~~~~-~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p-~~~~~~~ 452 (1124)
| +++....+ |...|+.+.+ +..+++++.|+++++|+...+.... .+ ...+. ....+|.
T Consensus 241 ~-----~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~-------~~-----~~~~~~~~~~~h~ 303 (345)
T 3fm0_A 241 W-----KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQ-------QP-----TFSLTAHLHQAHS 303 (345)
T ss_dssp E-----EEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTT-------SC-----CEEEEEEETTSSS
T ss_pred c-----ceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcc-------ee-----eEEEEeeeccccc
Confidence 1 12222223 5556644444 6678899999999999875443200 00 00001 1234799
Q ss_pred CceEEEEEccCC-CEEEEEcCCCeE-EEEcCCCc
Q 001202 453 WPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 453 ~~I~~va~SpdG-~~lAvag~dG~v-lwd~~sg~ 484 (1124)
.+|.+++|+|++ .+||+||.||.+ +|++.+++
T Consensus 304 ~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 304 QDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred CcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 999999999998 599999999999 99998765
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=2.7e-28 Score=281.77 Aligned_cols=284 Identities=12% Similarity=0.109 Sum_probs=212.2
Q ss_pred hhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeE
Q 001202 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~l 145 (1124)
+.+.+.+++|+||+++||+++.||.|++||...+...... ..........++.+++..+
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~---------------------~~~~~~v~~~~~sp~g~~l 121 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV---------------------TMPCTWVMACAYAPSGCAI 121 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---------------------ECSSSCCCEEEECTTSSEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE---------------------ecCCCCEEEEEECCCCCEE
Confidence 4577899999999999999999999999997654321111 1111122344667788999
Q ss_pred EEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEE
Q 001202 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (1124)
Q Consensus 146 lv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~ 225 (1124)
++++.|+.+.+|.+......... ........|...|.++ .
T Consensus 122 asg~~d~~i~v~~~~~~~~~~~~------------------------------~~~~~~~~h~~~v~~~----------~ 161 (354)
T 2pbi_B 122 ACGGLDNKCSVYPLTFDKNENMA------------------------------AKKKSVAMHTNYLSAC----------S 161 (354)
T ss_dssp EEESTTSEEEEEECCCCTTCCSG------------------------------GGCEEEEECSSCEEEE----------E
T ss_pred EEeeCCCCEEEEEEecccccccc------------------------------ccceeeeccCCcEEEE----------E
Confidence 99999999998765432111000 0000122345556554 4
Q ss_pred EecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEcc--CCCEEEEEecCCeEEEEEcCCCCceeEEEeecc
Q 001202 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1124)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~sp--dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~ 299 (1124)
++++++.+++++.|+++++||..+++.. .+|...+ +++++| ++.+|++|+.||+|++||+.+ ++++.++.
T Consensus 162 ~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~--- 237 (354)
T 2pbi_B 162 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFE--- 237 (354)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEEC---
T ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEec---
Confidence 4588999999999999999999877643 6899988 999987 578999999999999999998 77777776
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCC-cCceeeeEEcCCCCCCcceEEEeeeEEEE
Q 001202 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQDCKYEPLMSGTSMMQW 378 (1124)
Q Consensus 300 ~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~-~~~V~s~~~sp~~~~~~~~l~sg~~i~~W 378 (1124)
+ |.+.|.+++|+|+|..||+|+.|++|++||+.++..+..+..+. ...+++++|+|+
T Consensus 238 -~----h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~----------------- 295 (354)
T 2pbi_B 238 -T----HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS----------------- 295 (354)
T ss_dssp -C----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT-----------------
T ss_pred -C----CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCC-----------------
Confidence 5 99999999999999999999999999999999887666654321 123334444443
Q ss_pred eCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEE
Q 001202 379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (1124)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~v 458 (1124)
++.+++++.|+++++|++..+.. ...+.+|..+|.++
T Consensus 296 -----------------------g~~l~~g~~d~~i~vwd~~~~~~--------------------~~~l~~h~~~v~~l 332 (354)
T 2pbi_B 296 -----------------------GRLLFAGYNDYTINVWDVLKGSR--------------------VSILFGHENRVSTL 332 (354)
T ss_dssp -----------------------SSEEEEEETTSCEEEEETTTCSE--------------------EEEECCCSSCEEEE
T ss_pred -----------------------CCEEEEEECCCcEEEEECCCCce--------------------EEEEECCCCcEEEE
Confidence 33456677788888888755443 34566899999999
Q ss_pred EEccCCCEEEEEcCCCeE-EEE
Q 001202 459 AASKDGMFLAVAGLHGLI-LYD 479 (1124)
Q Consensus 459 a~SpdG~~lAvag~dG~v-lwd 479 (1124)
+|||||++||+|+.||++ +|+
T Consensus 333 ~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 333 RVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999 995
No 17
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=6.1e-29 Score=293.15 Aligned_cols=272 Identities=15% Similarity=0.144 Sum_probs=227.3
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce---ecCCCCeE-EEEEccCCCEEEEEecCCe
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGV 279 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~---~~gh~~~v-~va~spdg~lLAsGs~Dgt 279 (1124)
+.+|...|.++.|+ |+|+++++++.|+++++||..+++. +.+|.+.| +++|+|++++||+|+.||+
T Consensus 104 l~gh~~~V~~~~~~----------p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~ 173 (410)
T 1vyh_C 104 LSGHRSPVTRVIFH----------PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMT 173 (410)
T ss_dssp EECCSSCEEEEEEC----------SSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ecccCCcEEEEEEc----------CCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 44677778776665 7889999999999999999887653 37899999 9999999999999999999
Q ss_pred EEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEc
Q 001202 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (1124)
Q Consensus 280 V~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~s 359 (1124)
|++||+.+ ..++.++. + |.+.|.+++|+|+|.+|++|+.|++|++||+.++.++.++.+| ...|.++.++
T Consensus 174 i~iwd~~~-~~~~~~~~----~----h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~~ 243 (410)
T 1vyh_C 174 IKLWDFQG-FECIRTMH----G----HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-REWVRMVRPN 243 (410)
T ss_dssp CCEEETTS-SCEEECCC----C----CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEC
T ss_pred EEEEeCCC-CceeEEEc----C----CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC-CccEEEEEEC
Confidence 99999987 67776665 5 9999999999999999999999999999999999999999998 7889999999
Q ss_pred CCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec-----------------------cceEEeeccCCc
Q 001202 360 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-----------------------GKCCLNRGVSGM 413 (1124)
Q Consensus 360 p~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~-----------------------~k~~~s~s~d~~ 413 (1124)
|++ ..+++|+ ++++|+..++++.....+|...|.++.+ ++.+++++.|++
T Consensus 244 ~~g----~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~ 319 (410)
T 1vyh_C 244 QDG----TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319 (410)
T ss_dssp TTS----SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred CCC----CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe
Confidence 998 8888877 8999999999998888888888855444 346899999999
Q ss_pred eeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcE-EEecCc
Q 001202 414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW-RVFGDI 491 (1124)
Q Consensus 414 v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~w-k~f~~~ 491 (1124)
+++|++..+.. ...+.+|..+|++++|+|+|++|++||.||.+ +||+.+++. +.+.
T Consensus 320 i~iwd~~~~~~--------------------~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~-- 377 (410)
T 1vyh_C 320 IKMWDVSTGMC--------------------LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-- 377 (410)
T ss_dssp EEEEETTTTEE--------------------EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--
T ss_pred EEEEECCCCce--------------------EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc--
Confidence 99999865443 45677899999999999999999999999999 999987652 2332
Q ss_pred CceeeeEEEEEEecCC--EEEEEEEecCCCeEEEEEeeC
Q 001202 492 TQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 492 ~~e~~~~v~gl~W~~~--~liv~~~~~~~~~~elrly~~ 528 (1124)
.|+ -.|.++.|.++ ++++|+. +..|++|+.
T Consensus 378 ~h~--~~v~~l~~~~~~~~l~sgs~-----D~~i~vW~~ 409 (410)
T 1vyh_C 378 AHE--HFVTSLDFHKTAPYVVTGSV-----DQTVKVWEC 409 (410)
T ss_dssp CCS--SCEEEEEECSSSSCEEEEET-----TSEEEEEC-
T ss_pred CCC--CcEEEEEEcCCCCEEEEEeC-----CCcEEEEeC
Confidence 122 24778888754 6666633 237899864
No 18
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=4.7e-29 Score=290.81 Aligned_cols=296 Identities=14% Similarity=0.163 Sum_probs=214.7
Q ss_pred hhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeE
Q 001202 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~l 145 (1124)
+.+.+.+++|+|||++||+++.||+|++||+..+........|. ......++.+++..+
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~---------------------~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC---------------------PWVMECAFAPNGQSV 123 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC---------------------TTCCCCEECTTSSEE
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCC---------------------CCEEEEEECCCCCEE
Confidence 45788999999999999999999999999986543221111111 111223566788899
Q ss_pred EEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEE
Q 001202 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (1124)
Q Consensus 146 lv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~ 225 (1124)
++|+.|+.+++|+........... .....+.+|...|.++.|+|.
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~-----------------------------~~~~~~~gh~~~v~~~~~~~~------ 168 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNM-----------------------------PVSRVLTGHKGYASSCQYVPD------ 168 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSS-----------------------------TTCCBCCCCSSCCCCCBCCSS------
T ss_pred EEeeCCCcEEEEECCCCccccCCc-----------------------------cceeeccCCCcceEEEEEecC------
Confidence 999999999986654321110000 000123456666665555532
Q ss_pred EecCCcEEEEEecCCceEeeecccccee--------cCCCCeE-EEEEcc-CCCEEEEEecCCeEEEEEcCCCCceeEEE
Q 001202 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE--------LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTV 295 (1124)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~wd~~~~~~~--------~gh~~~v-~va~sp-dg~lLAsGs~DgtV~vwd~~~~~~~~~~l 295 (1124)
++..+++++.|+++++||..+++.. .+|...+ +++++| ++.++++|+.||+|++||+......+.++
T Consensus 169 ---~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~ 245 (380)
T 3iz6_a 169 ---QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY 245 (380)
T ss_dssp ---SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE
T ss_pred ---CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE
Confidence 3556888999999999999877543 4788888 999987 88999999999999999998645667777
Q ss_pred eeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcC------ceeeeEEcCCCCCCcceE
Q 001202 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS------SISSPIVKPNQDCKYEPL 369 (1124)
Q Consensus 296 ~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~------~V~s~~~sp~~~~~~~~l 369 (1124)
. + |.+.|.+++|+|||++|++|+.||+|++||+.++..+.++..+... .|++++|+|+
T Consensus 246 ~----~----h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------- 309 (380)
T 3iz6_a 246 H----G----HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSIS-------- 309 (380)
T ss_dssp C----C----CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSS--------
T ss_pred C----C----cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCC--------
Confidence 6 5 9999999999999999999999999999999999888877654110 1233333333
Q ss_pred EEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeec
Q 001202 370 MSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (1124)
Q Consensus 370 ~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~ 449 (1124)
++.+++++.|+.+++|+...++... .+.....
T Consensus 310 --------------------------------g~~l~~g~~dg~i~vwd~~~~~~~~----------------~~~~~~~ 341 (380)
T 3iz6_a 310 --------------------------------GRLLFAGYSNGDCYVWDTLLAEMVL----------------NLGTLQN 341 (380)
T ss_dssp --------------------------------SSEEEEECTTSCEEEEETTTCCEEE----------------EECCSCS
T ss_pred --------------------------------CCEEEEEECCCCEEEEECCCCceEE----------------EEecccC
Confidence 4455667778888888865443310 0011124
Q ss_pred cCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 450 ~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
+|..+|.+++|||||++||+||.||++ +|++..++
T Consensus 342 ~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 342 SHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 789999999999999999999999999 99987653
No 19
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=9.5e-28 Score=272.79 Aligned_cols=288 Identities=14% Similarity=0.130 Sum_probs=216.3
Q ss_pred hhcceeEEEEecCC-cEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEE--EeecC
Q 001202 66 REGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDN 142 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg-~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~d~ 142 (1124)
+.+.+.+++|+|++ ++|++++.||+|++|++........ .....+.++...|.+ +.+++
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~------------------~~~~~~~~h~~~v~~~~~s~dg 77 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG------------------VPVRSFKGHSHIVQDCTLTADG 77 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE------------------EEEEEEECCSSCEEEEEECTTS
T ss_pred ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc------------------ccceEEeCCcccEEEEEECCCC
Confidence 45788999999975 8999999999999999975432100 000123344455554 45677
Q ss_pred CeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcce
Q 001202 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (1124)
Q Consensus 143 ~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~ 222 (1124)
..+++++.||.|++| +........ .+.+|...|.++.++
T Consensus 78 ~~l~s~s~D~~v~~w--d~~~~~~~~----------------------------------~~~~h~~~v~~~~~~----- 116 (319)
T 3frx_A 78 AYALSASWDKTLRLW--DVATGETYQ----------------------------------RFVGHKSDVMSVDID----- 116 (319)
T ss_dssp SEEEEEETTSEEEEE--ETTTTEEEE----------------------------------EEECCSSCEEEEEEC-----
T ss_pred CEEEEEeCCCEEEEE--ECCCCCeeE----------------------------------EEccCCCcEEEEEEc-----
Confidence 889999999999985 433222110 133566777766655
Q ss_pred EEEEecCCcEEEEEecCCceEeeeccccc--eecCCCCeE-EEEEccC------CCEEEEEecCCeEEEEEcCCCCceeE
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKID--KELGSGDAV-CASIAPE------QQILAVGTRRGVVELYDLAESASLIR 293 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~--~~~gh~~~v-~va~spd------g~lLAsGs~DgtV~vwd~~~~~~~~~ 293 (1124)
++|+.+++++.|+++++||..... ...+|.+.+ +++++|. +..+++|+.||+|++||+.+ .+...
T Consensus 117 -----~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~ 190 (319)
T 3frx_A 117 -----KKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEA 190 (319)
T ss_dssp -----TTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEE
T ss_pred -----CCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhhe
Confidence 789999999999999999976432 237899999 9999995 45899999999999999987 66666
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee
Q 001202 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1124)
Q Consensus 294 ~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~ 373 (1124)
.+. + |.++|.+++|+|||++||+|+.||+|++||+.+++++.++..+ ..|.+++|+|++ ..++++.
T Consensus 191 ~~~----~----h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~----~~la~~~ 256 (319)
T 3frx_A 191 DFI----G----HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNR----YWLAAAT 256 (319)
T ss_dssp EEC----C----CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSS----SEEEEEE
T ss_pred eec----C----CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCC----CEEEEEc
Confidence 665 5 9999999999999999999999999999999999999998764 579999999997 6666554
Q ss_pred --eEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccC
Q 001202 374 --SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (1124)
Q Consensus 374 --~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~ 451 (1124)
.+++|+.+...++.....+ . ......|
T Consensus 257 ~~~i~v~~~~~~~~~~~~~~~-------------------------------~--------------------~~~~~~~ 285 (319)
T 3frx_A 257 ATGIKVFSLDPQYLVDDLRPE-------------------------------F--------------------AGYSKAA 285 (319)
T ss_dssp TTEEEEEEETTEEEEEEECCC-------------------------------C--------------------TTCCGGG
T ss_pred CCCcEEEEeCcCeeeeccCcc-------------------------------c--------------------cccccCc
Confidence 5666665543332221110 0 0111245
Q ss_pred CCceEEEEEccCCCEEEEEcCCCeE-EEEcCCC
Q 001202 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 452 ~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg 483 (1124)
...+.+++|||||++|++|+.||.+ +||+.++
T Consensus 286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 6678999999999999999999999 9998764
No 20
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=4.2e-28 Score=273.64 Aligned_cols=279 Identities=15% Similarity=0.166 Sum_probs=221.2
Q ss_pred cccccceEEEE--eecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccC
Q 001202 128 FAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF 205 (1124)
Q Consensus 128 ~~~~~~~v~~i--~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~ 205 (1124)
+.++...|.++ .+++..+++++.||.+++|+.+. ..... .+.
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~--~~~~~----------------------------------~~~ 52 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET--QVEVR----------------------------------SIQ 52 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--TEEEE----------------------------------EEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--CceeE----------------------------------Eee
Confidence 34455556664 46778899999999999854432 21110 122
Q ss_pred CCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEE
Q 001202 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVE 281 (1124)
Q Consensus 206 ~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~ 281 (1124)
.+...|.+ +.++++|+.+++++.|+++++||..+++.. .+|.+.| +++|+|++++||+|+.||+|+
T Consensus 53 ~~~~~v~~----------~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~ 122 (304)
T 2ynn_A 53 VTETPVRA----------GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122 (304)
T ss_dssp CCSSCEEE----------EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred ccCCcEEE----------EEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEE
Confidence 34455654 445589999999999999999999887653 6899999 999999999999999999999
Q ss_pred EEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECC-CCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcC
Q 001202 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (1124)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp 360 (1124)
+||+.+.......+. + |.+.|.+++|+| |+..||+|+.|++|++||+..+....++..++...+..+.++|
T Consensus 123 lWd~~~~~~~~~~~~----~----h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 194 (304)
T 2ynn_A 123 LWNWENNWALEQTFE----G----HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194 (304)
T ss_dssp EEEGGGTTEEEEEEC----C----CCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECC
T ss_pred EEECCCCcchhhhhc----c----cCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEE
Confidence 999987334455555 5 999999999999 6889999999999999999887776666655467899999987
Q ss_pred CCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEE--EEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCC
Q 001202 361 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (1124)
Q Consensus 361 ~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~--~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~ 434 (1124)
..+ ...+++|+ ++++|+..+++++....+|...|. ++++ ++.+++++.|+++++|+...+..
T Consensus 195 ~~~--~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~---------- 262 (304)
T 2ynn_A 195 LPD--KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV---------- 262 (304)
T ss_dssp STT--CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE----------
T ss_pred cCC--CCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce----------
Confidence 431 16788877 999999999999999999998884 4555 77899999999999999765443
Q ss_pred ccceeeecccceeeccCCCceEEEEEccCCC--EEEEEcCCCeEEEEcCC
Q 001202 435 DELKILHLNLPVSYISQNWPVQHVAASKDGM--FLAVAGLHGLILYDIRQ 482 (1124)
Q Consensus 435 ~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~--~lAvag~dG~vlwd~~s 482 (1124)
..++..|..++.+++++|+|+ ++|+|+.||.++|++..
T Consensus 263 ----------~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 263 ----------EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp ----------EEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred ----------eeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 345667888999999999886 69999999988998754
No 21
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.4e-27 Score=271.96 Aligned_cols=273 Identities=13% Similarity=0.175 Sum_probs=218.1
Q ss_pred hhcceeEEEEecC----CcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEe--
Q 001202 66 REGENLQAVWSPD----TKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV-- 139 (1124)
Q Consensus 66 ~~G~~~~v~wSPD----g~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-- 139 (1124)
+.+.+.+++|+|+ +++||+++.||.|++|++..+... ....+.++...|.++.
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~---------------------~~~~l~gh~~~v~~~~~~ 89 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD---------------------LQWSLEGHQLGVVSVDIS 89 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE---------------------EEEEECCCSSCEEEEEEC
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee---------------------eeeeeccCCCCEEEEEEC
Confidence 5678899999985 678999999999999998753211 1112334555566655
Q ss_pred ecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCC
Q 001202 140 SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP 219 (1124)
Q Consensus 140 ~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~ 219 (1124)
+++..+++++.||.|++| +........ ....+...+
T Consensus 90 ~~~~~l~s~s~D~~i~lW--d~~~~~~~~----------------------------------~~~~~~~~~-------- 125 (321)
T 3ow8_A 90 HTLPIAASSSLDAHIRLW--DLENGKQIK----------------------------------SIDAGPVDA-------- 125 (321)
T ss_dssp SSSSEEEEEETTSEEEEE--ETTTTEEEE----------------------------------EEECCTTCC--------
T ss_pred CCCCEEEEEeCCCcEEEE--ECCCCCEEE----------------------------------EEeCCCccE--------
Confidence 455678888899999985 433221110 011112222
Q ss_pred cceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEE
Q 001202 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (1124)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l 295 (1124)
..++++|||+.+++++.++++++|+..+++.. ..|...+ +++|+|++++||+|+.||+|++||+.+ ++.+.++
T Consensus 126 --~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~~~ 202 (321)
T 3ow8_A 126 --WTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTL 202 (321)
T ss_dssp --CCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEE
T ss_pred --EEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEE
Confidence 24566699999999999999999998876543 5777888 999999999999999999999999988 7777777
Q ss_pred eeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee--
Q 001202 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (1124)
Q Consensus 296 ~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~-- 373 (1124)
. + |.++|.+++|+|||++|++|+.||+|++||+.++.+..++.+| ...|.+++|+|++ ..+++|+
T Consensus 203 ~----~----h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~sp~~----~~l~s~s~D 269 (321)
T 3ow8_A 203 E----G----HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH-ASWVLNVAFCPDD----THFVSSSSD 269 (321)
T ss_dssp C----C----CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTS----SEEEEEETT
T ss_pred c----c----cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC-CCceEEEEECCCC----CEEEEEeCC
Confidence 6 5 9999999999999999999999999999999999999999998 7889999999998 7888887
Q ss_pred -eEEEEeCCCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEe
Q 001202 374 -SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQV 419 (1124)
Q Consensus 374 -~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l 419 (1124)
++++|+..+++++....+|...|..+.+ ++.+++++.|+++++|++
T Consensus 270 ~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 270 KSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 8999999999999999999999965555 778999999999999984
No 22
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-27 Score=306.61 Aligned_cols=222 Identities=11% Similarity=0.095 Sum_probs=159.6
Q ss_pred hcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeec-CCeE
Q 001202 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD-NKHM 145 (1124)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d-~~~l 145 (1124)
.+.+.+++|+|||++||+++.||.|++|+........ . . .+...|.+++.. ++.+
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~-----------------~------~-~~~~~V~~l~fspg~~L 72 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI-----------------K------L-EDRSAIKEMRFVKGIYL 72 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE-----------------E------C-SSCCCEEEEEEETTTEE
T ss_pred CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE-----------------E------c-CCCCCEEEEEEcCCCEE
Confidence 4678899999999999999999999999865321100 0 0 112345555433 5568
Q ss_pred EEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEE
Q 001202 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (1124)
Q Consensus 146 lv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~ 225 (1124)
++++.|+.|++|+.+. ..... .+ .+...|.++.|+
T Consensus 73 ~S~s~D~~v~lWd~~~--~~~~~----------------------------------~~-~~~~~V~~v~~s-------- 107 (902)
T 2oaj_A 73 VVINAKDTVYVLSLYS--QKVLT----------------------------------TV-FVPGKITSIDTD-------- 107 (902)
T ss_dssp EEEETTCEEEEEETTT--CSEEE----------------------------------EE-ECSSCEEEEECC--------
T ss_pred EEEECcCeEEEEECCC--CcEEE----------------------------------EE-cCCCCEEEEEEC--------
Confidence 8899999999855442 21110 00 123456555554
Q ss_pred EecCCcEEEEEecCCceEeeeccccce--------------ecCCCCeE-EEEEccC-CCEEEEEecCCeEEEEEcCCCC
Q 001202 226 LYSNGQLMSCSVSKKGLKLAEFIKIDK--------------ELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESA 289 (1124)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~wd~~~~~~--------------~~gh~~~v-~va~spd-g~lLAsGs~DgtV~vwd~~~~~ 289 (1124)
|+|+++++++.|+++++||..+.+. ..+|.+.| +++|+|+ +..+++|+.||+| +||+.+ +
T Consensus 108 --p~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~-~ 183 (902)
T 2oaj_A 108 --ASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE-N 183 (902)
T ss_dssp --TTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT-T
T ss_pred --CCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC-C
Confidence 8899999999999999999876542 25788899 9999996 5789999999999 999988 7
Q ss_pred ceeEEEeecc-CC---------CCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEE--ec---cC------
Q 001202 290 SLIRTVSLYD-WG---------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST--IR---QI------ 348 (1124)
Q Consensus 290 ~~~~~l~~~~-~g---------~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~t--l~---~h------ 348 (1124)
+..+++.... .| ....|.+.|.+++|+|||.+||+|+.||+|++||+.+++++.. +. +|
T Consensus 184 ~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~ 263 (902)
T 2oaj_A 184 EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDY 263 (902)
T ss_dssp EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTC
T ss_pred ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcC
Confidence 7776665220 00 0023568899999999999999999999999999988877653 31 12
Q ss_pred ------CcCceeeeEEcCC
Q 001202 349 ------SLSSISSPIVKPN 361 (1124)
Q Consensus 349 ------~~~~V~s~~~sp~ 361 (1124)
+...|++++|++.
T Consensus 264 ~~~~~~~~~~V~~v~w~~~ 282 (902)
T 2oaj_A 264 IRDSSTNAAKISKVYWMCE 282 (902)
T ss_dssp CCCCSSCCCEEEEEEEEEC
T ss_pred CCCCccccCCeeEEEEEec
Confidence 1346999999653
No 23
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.96 E-value=4e-27 Score=290.27 Aligned_cols=419 Identities=11% Similarity=0.059 Sum_probs=284.0
Q ss_pred hhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccce-EEE--Eee--
Q 001202 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLS-VSN--IVS-- 140 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~--i~~-- 140 (1124)
+.+.+.+++|||||+.||+++ ++.+++|++..+.... .....+.++... |.+ +.+
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~-------------------~~~~~~~~h~~~~v~~~~~sp~~ 76 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKV-------------------PPVVQFTGHGSSVVTTVKFSPIK 76 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSS-------------------CSEEEECTTTTSCEEEEEECSST
T ss_pred ccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCcc-------------------ccceEEecCCCceEEEEEECcCC
Confidence 457788999999999999998 7899999997541100 001112334444 555 445
Q ss_pred cCCeEEEEecCCcEEEEeccCccc-cceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCC
Q 001202 141 DNKHMLLGLSDGSLYSISWKGEFY-GAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP 219 (1124)
Q Consensus 141 d~~~llv~t~dg~v~~~~Wd~~~~-~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~ 219 (1124)
+++.+++++.||.|++|+.+.... ..... .....+..+...|.++.|+
T Consensus 77 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~v~~~~~s-- 125 (615)
T 1pgu_A 77 GSQYLCSGDESGKVIVWGWTFDKESNSVEV-----------------------------NVKSEFQVLAGPISDISWD-- 125 (615)
T ss_dssp TCCEEEEEETTSEEEEEEEEEEGGGTEEEE-----------------------------EEEEEEECCSSCEEEEEEC--
T ss_pred CCCEEEEecCCCEEEEEeCCCCcccccccc-----------------------------cccchhhcccccEEEEEEe--
Confidence 678899999999999866532100 00000 0000123455667666665
Q ss_pred cceEEEEecCCcEEEEEecC----CceEeeeccccc-eecCCCCeE-EEEEccCCC-EEEEEecCCeEEEEEcCCCCcee
Q 001202 220 MRLLFVLYSNGQLMSCSVSK----KGLKLAEFIKID-KELGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAESASLI 292 (1124)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~d----~~i~~wd~~~~~-~~~gh~~~v-~va~spdg~-lLAsGs~DgtV~vwd~~~~~~~~ 292 (1124)
|||+.+++++.+ +.+.+|+..... ...+|.+.+ +++|+|+++ ++++|+.||+|++||+.+ ++..
T Consensus 126 --------~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~-~~~~ 196 (615)
T 1pgu_A 126 --------FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP-FKFS 196 (615)
T ss_dssp --------TTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT-BEEE
T ss_pred --------CCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC-ccee
Confidence 788888888776 578888843221 236899999 999999998 899999999999999987 7777
Q ss_pred EEEeeccCCCCCCCCC---CeEEEEECCC-CCEEEEEECCCcEEEEEcCCCeeeEEe-c---cCCcCceeeeEEcCCCCC
Q 001202 293 RTVSLYDWGYSMDDTG---PVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRLMSTI-R---QISLSSISSPIVKPNQDC 364 (1124)
Q Consensus 293 ~~l~~~~~g~~~~h~g---~V~~lawSPD-G~~Lasgs~Dg~I~vWdv~~~~l~~tl-~---~h~~~~V~s~~~sp~~~~ 364 (1124)
.++. + |.+ +|.+++|+|| |++|++|+.||.|++||+.+++.+.++ . +| ...|.+++|+ ++
T Consensus 197 ~~~~----~----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~-~~-- 264 (615)
T 1pgu_A 197 ASDR----T----HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV-QGGIFALSWL-DS-- 264 (615)
T ss_dssp EEEC----S----SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC-CSCEEEEEES-SS--
T ss_pred eeec----c----cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc-CCceEEEEEc-CC--
Confidence 7776 4 888 9999999999 999999999999999999999999998 4 55 7889999999 76
Q ss_pred CcceEEEee---eEEEEeCCCCeEEEEecCC----cceEEE--EeccceEEeeccCCceeeeEeeecCCeEEEeecC---
Q 001202 365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGS----SERVLI--FSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSE--- 432 (1124)
Q Consensus 365 ~~~~l~sg~---~i~~W~~~~~~l~~~~~~~----~~~v~~--~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~--- 432 (1124)
..+++++ .+++|+..+++.......+ ...+.. ++.++.+++++.|+.+++|++..+.. +....++
T Consensus 265 --~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~-~~~~~~~~~~ 341 (615)
T 1pgu_A 265 --QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV-LKTISGHNKG 341 (615)
T ss_dssp --SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEE-EEEECCCSSC
T ss_pred --CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcE-EEEEeCCCCC
Confidence 7787776 8999999999888877665 244433 33488899999999999999654321 1111110
Q ss_pred --------------C------------------------------------Cccceeeecc-------------------
Q 001202 433 --------------D------------------------------------TDELKILHLN------------------- 443 (1124)
Q Consensus 433 --------------~------------------------------------~~~~~w~~~~------------------- 443 (1124)
+ .....|....
T Consensus 342 v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~ 421 (615)
T 1pgu_A 342 ITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTA 421 (615)
T ss_dssp EEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEE
T ss_pred EEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEE
Confidence 0 0000121100
Q ss_pred ----------------cceeeccCCCceEEEEEccCCCEEEEEcC-CCeE-EEEcCCCcEEEecCcCceeeeEEEEEEec
Q 001202 444 ----------------LPVSYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL 505 (1124)
Q Consensus 444 ----------------~p~~~~~~~~~I~~va~SpdG~~lAvag~-dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~ 505 (1124)
.+.....+..++.+++|+ |+++++|+. ||.+ +||+.+++........+ ...+..+.|.
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~--~~~v~~~~~s 497 (615)
T 1pgu_A 422 VLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPL--RAKPSYISIS 497 (615)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCC--SSCEEEEEEC
T ss_pred EEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCc--cCceEEEEEC
Confidence 000111356677788887 888888888 8888 88888765532111112 2346778885
Q ss_pred --CCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEee--cCCcc--EEEEe----------eCCEEEEEEcCCeEEEEE
Q 001202 506 --GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKS--LLAKP--IVMDV----------YEDYILVTYRPFDVHIFH 569 (1124)
Q Consensus 506 --~~~liv~~~~~~~~~~elrly~~~~ld~~~~l~~~~--l~s~~--l~l~~----------~~~~llv~~~d~~i~l~~ 569 (1124)
+.++++++. +..+++|+.. +...+.... ....+ +.+++ .+..+++++.|+.|++|+
T Consensus 498 ~~g~~l~~~~~-----dg~i~iw~~~---~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~ 569 (615)
T 1pgu_A 498 PSETYIAAGDV-----MGKILLYDLQ---SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS 569 (615)
T ss_dssp TTSSEEEEEET-----TSCEEEEETT---TTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred CCCCEEEEcCC-----CCeEEEeeCC---CCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEE
Confidence 556766633 2369999884 112222211 22333 45566 677888899999999998
Q ss_pred EE
Q 001202 570 VK 571 (1124)
Q Consensus 570 ~~ 571 (1124)
+.
T Consensus 570 ~~ 571 (615)
T 1pgu_A 570 VK 571 (615)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-27 Score=273.04 Aligned_cols=285 Identities=14% Similarity=0.162 Sum_probs=209.6
Q ss_pred cccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCC
Q 001202 128 FAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (1124)
Q Consensus 128 ~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~ 207 (1124)
+.++...|.++..+++.+++|+.||.|++|+.......... ......|
T Consensus 10 ~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~--------------------------------~~~~~~h 57 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLID--------------------------------VLDETAH 57 (330)
T ss_dssp EECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEE--------------------------------EECTTCC
T ss_pred eccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEE--------------------------------EEecCCc
Confidence 45667789999888888888999999998654422110000 0001236
Q ss_pred CceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccc-------c---eecCCCCeE-EEEEccCCCEEEEEec
Q 001202 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-------D---KELGSGDAV-CASIAPEQQILAVGTR 276 (1124)
Q Consensus 208 ~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~-------~---~~~gh~~~v-~va~spdg~lLAsGs~ 276 (1124)
...|.++.|+ |+|+++++++.|+++++|+.... + .+.+|.+.| +++|+|++++||+|+.
T Consensus 58 ~~~v~~v~~s----------p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~ 127 (330)
T 2hes_X 58 KKAIRSVAWR----------PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR 127 (330)
T ss_dssp CSCEEEEEEC----------TTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET
T ss_pred cCCEEEEEEC----------CCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence 6778776666 78999999999999999987421 1 136899999 9999999999999999
Q ss_pred CCeEEEEEcCCCC---ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC--eeeEEeccCCcC
Q 001202 277 RGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLS 351 (1124)
Q Consensus 277 DgtV~vwd~~~~~---~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~--~l~~tl~~h~~~ 351 (1124)
||+|++||+...+ +++..+. + |.+.|.+++|+|||.+|++|+.|++|++|+..++ .++.++.+| ..
T Consensus 128 D~~v~iwd~~~~~~~~~~~~~~~----~----h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h-~~ 198 (330)
T 2hes_X 128 DKSVWIWETDESGEEYECISVLQ----E----HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH-EG 198 (330)
T ss_dssp TSCEEEEECCTTCCCCEEEEEEC----C----CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SS
T ss_pred CCEEEEEeccCCCCCeEEEEEec----c----CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCC-CC
Confidence 9999999995423 3344454 4 9999999999999999999999999999999776 678889888 78
Q ss_pred ceeeeEEcCCCCCCcceEEEee---eEEEEeCCCC--------eEEEEecC-CcceEEEEec--cceEEeeccCCceeee
Q 001202 352 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--------RLYAIEEG-SSERVLIFSF--GKCCLNRGVSGMTYAR 417 (1124)
Q Consensus 352 ~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~--------~l~~~~~~-~~~~v~~~s~--~k~~~s~s~d~~v~~w 417 (1124)
.|.+++|+|++. ...+++|+ ++++|+..++ .+.....+ |...|..+.+ ...+++++.|+++++|
T Consensus 199 ~v~~~~~~~~~~--~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw 276 (330)
T 2hes_X 199 TVWSSDFDKTEG--VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVY 276 (330)
T ss_dssp CEEEEEECCSSS--SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEE
T ss_pred cEEEEEecCCCC--eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEE
Confidence 899999999831 15678876 8999998654 34444444 7788865555 6689999999999999
Q ss_pred EeeecCCeEEEeecCCCccceeeecccceeeccCCC-ceEEEEEcc--CCCEEEEEcCCCeE-EEEcCC
Q 001202 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW-PVQHVAASK--DGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 418 ~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~-~I~~va~Sp--dG~~lAvag~dG~v-lwd~~s 482 (1124)
+...+..+. ......+|.. .|.+++|+| +|++||+||.||++ +||+.+
T Consensus 277 ~~~~~~~~~-----------------~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 277 EEVDGEWKV-----------------FAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEETTEEEE-----------------EEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EcCCCceEE-----------------EeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 976442211 0112346766 899999999 79999999999999 999864
No 25
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.8e-27 Score=278.23 Aligned_cols=364 Identities=13% Similarity=0.102 Sum_probs=246.3
Q ss_pred cEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCc-EEEEEeCCCeEEEEEe----eecCceeecCCCCCCCcce
Q 001202 41 HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTK-LIAVVTSSLYLHIFKV----QITEKSIQIGGKQPSGLFF 115 (1124)
Q Consensus 41 ~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~-~Lav~t~dg~l~i~~v----~~~~~~~~~~~~~~~~~~~ 115 (1124)
...+|+.. ........ ..+.+.+.+++|+|||+ +||+++.+|.|++|++ ..+....... ..
T Consensus 26 ~~~~~~~~-~~~~~~~~------~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-------~~ 91 (425)
T 1r5m_A 26 IDSSDDLD-GFVKILKE------IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLT-------II 91 (425)
T ss_dssp ---------CCCEECEE------EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEE-------EE
T ss_pred ccccccch-hhhhheee------eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccc-------cc
Confidence 35678875 33222111 12347889999999999 9999999999999999 5433100000 00
Q ss_pred eeEEEEeeeeeecccccceEEEEe--ecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccc
Q 001202 116 IKISLVLNEQLPFAEKGLSVSNIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASV 193 (1124)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~v~~i~--~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~ 193 (1124)
..+...+.......++...|++++ ++++.+++++.||.+++|+.++. ..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~---~~-------------------------- 142 (425)
T 1r5m_A 92 AELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGA---LL-------------------------- 142 (425)
T ss_dssp EEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEETTSC---EE--------------------------
T ss_pred ccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ee--------------------------
Confidence 000000000001112344566544 56778999999999988642211 11
Q ss_pred cCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCe-----------
Q 001202 194 DTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDA----------- 259 (1124)
Q Consensus 194 ~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~----------- 259 (1124)
..+..+...|.++.|+ |+|+.+++++.++.+++|+..+++.. ..+...
T Consensus 143 --------~~~~~~~~~v~~~~~~----------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (425)
T 1r5m_A 143 --------NVLNFHRAPIVSVKWN----------KDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSG 204 (425)
T ss_dssp --------EEECCCCSCEEEEEEC----------TTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------
T ss_pred --------eeccCCCccEEEEEEC----------CCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccC
Confidence 0123456677766665 78888999999999999998776543 344443
Q ss_pred ----E-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEE
Q 001202 260 ----V-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (1124)
Q Consensus 260 ----v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vW 334 (1124)
+ +++|+|++ .+++|+.||.|++|++.+ +.....+. + |.++|.+++|+|+|.+|++|+.||.|++|
T Consensus 205 ~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~-~~~~~~~~----~----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 205 DGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITE-KTPTGKLI----G----HHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp -CCCBSCCEEEETT-EEEEECGGGCEEEEETTC-SSCSEEEC----C----CSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCC-Cceeeeec----c----CCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 6 99999986 488899999999999988 66666665 4 89999999999999999999999999999
Q ss_pred EcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEE--Eec-cceEEee
Q 001202 335 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNR 408 (1124)
Q Consensus 335 dv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~--~s~-~k~~~s~ 408 (1124)
|+.++....++.+| ...|.+++|+|++ .+++++ .+.+|+..++++......|...+.. +++ ++.++++
T Consensus 275 d~~~~~~~~~~~~~-~~~i~~~~~~~~~-----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 348 (425)
T 1r5m_A 275 HGGNGNSQNCFYGH-SQSIVSASWVGDD-----KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVA 348 (425)
T ss_dssp CSSSBSCSEEECCC-SSCEEEEEEETTT-----EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEE
T ss_pred ECCCCccceEecCC-CccEEEEEECCCC-----EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEE
Confidence 99999989999887 6789999999985 455554 8999999999999888888888854 444 7889999
Q ss_pred ccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCC--ceEEEEEccCCCEEEEEcCCCeE-EEEcC
Q 001202 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW--PVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (1124)
Q Consensus 409 s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~--~I~~va~SpdG~~lAvag~dG~v-lwd~~ 481 (1124)
+.|+.+++|++..+........+.......-...+....+.+|.. +|.+++|+|+|++||+|+.||.+ +|++.
T Consensus 349 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 349 FMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 999999999987654211000000000000001112345667766 99999999999999999999999 99975
No 26
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.96 E-value=2.4e-27 Score=271.92 Aligned_cols=276 Identities=14% Similarity=0.178 Sum_probs=210.1
Q ss_pred CCceE--EEEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEe
Q 001202 20 SSQQI--IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (1124)
Q Consensus 20 ~~~~i--v~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v 96 (1124)
+..+| ++|+|||++||+++ |++|+||+.. .+..+..... +.+.+.+++|+|||++||+++.||.+++|++
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~-~~~~~~~~~~------~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY-TTNKVHAIPL------RSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETT-TCCEEEEEEC------SSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECC-CCCcceEeec------CCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 44455 78999999999977 5689999985 5554444321 2456789999999999999999999999998
Q ss_pred eecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEee-cCCeEEEEecCCcEEEEeccCccccceeeccCCCC
Q 001202 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSND 175 (1124)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~ 175 (1124)
....... .....+.++...|.++.. ++..+++++.||.+++| +.......
T Consensus 127 ~~~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~w--d~~~~~~~-------- 177 (340)
T 1got_B 127 KTREGNV-------------------RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW--DIETGQQT-------- 177 (340)
T ss_dssp TTCSBSC-------------------EEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEE--ETTTTEEE--------
T ss_pred ccCCCcc-------------------eeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEE--ECCCCcEE--------
Confidence 6532100 000112334455665543 34568889999999884 43322211
Q ss_pred ccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee--
Q 001202 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-- 253 (1124)
Q Consensus 176 ~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~-- 253 (1124)
..+.+|...|.++.++ |+|+++++++.|+++++||..+++..
T Consensus 178 --------------------------~~~~~h~~~v~~~~~~----------~~~~~l~sg~~d~~v~~wd~~~~~~~~~ 221 (340)
T 1got_B 178 --------------------------TTFTGHTGDVMSLSLA----------PDTRLFVSGACDASAKLWDVREGMCRQT 221 (340)
T ss_dssp --------------------------EEECCCSSCEEEEEEC----------TTSSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred --------------------------EEEcCCCCceEEEEEC----------CCCCEEEEEeCCCcEEEEECCCCeeEEE
Confidence 0133566677666555 78999999999999999998876543
Q ss_pred -cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcE
Q 001202 254 -LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (1124)
Q Consensus 254 -~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I 331 (1124)
.+|...+ +++|+|++++||+|+.||+|++||+.. +..+..+.. ..+..+|.+++|+|||++|++|+.||.|
T Consensus 222 ~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~------~~~~~~v~~~~~s~~g~~l~~g~~d~~i 294 (340)
T 1got_B 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-DQELMTYSH------DNIICGITSVSFSKSGRLLLAGYDDFNC 294 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECC------TTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC-CcEEEEEcc------CCcccceEEEEECCCCCEEEEECCCCeE
Confidence 6899999 999999999999999999999999987 665555441 1145679999999999999999999999
Q ss_pred EEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEe
Q 001202 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (1124)
Q Consensus 332 ~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~ 379 (1124)
++||+.++....++.+| ...|++++|+|++ ..+++|+ ++++|+
T Consensus 295 ~vwd~~~~~~~~~~~~h-~~~v~~~~~s~dg----~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 295 NVWDALKADRAGVLAGH-DNRVSCLGVTDDG----MAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTTCCEEEEEECC-SSCEEEEEECTTS----SCEEEEETTSCEEEEC
T ss_pred EEEEcccCcEeeEeecC-CCcEEEEEEcCCC----CEEEEEcCCccEEecC
Confidence 99999999999999998 7889999999998 7777776 677774
No 27
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=3.8e-27 Score=276.02 Aligned_cols=224 Identities=16% Similarity=0.202 Sum_probs=188.9
Q ss_pred EEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeecc
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~ 299 (1124)
++++|||+++++++.|+++++||..+++.. .+|...| +++|+|++++|++|+.||+|++||+.+ ++...++.
T Consensus 129 v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~--- 204 (393)
T 1erj_A 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSLTLS--- 204 (393)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEE---
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC-CeeEEEEE---
Confidence 344589999999999999999998876543 7899999 999999999999999999999999988 77666666
Q ss_pred CCCCCCCCCCeEEEEECC-CCCEEEEEECCCcEEEEEcCCCeeeEEe-------ccCCcCceeeeEEcCCCCCCcceEEE
Q 001202 300 WGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTI-------RQISLSSISSPIVKPNQDCKYEPLMS 371 (1124)
Q Consensus 300 ~g~~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I~vWdv~~~~l~~tl-------~~h~~~~V~s~~~sp~~~~~~~~l~s 371 (1124)
+.+.|.+++|+| ||++|++|+.||+|++||+.++.++..+ .+| ...|.+++|+|++ +.+++
T Consensus 205 ------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~g----~~l~s 273 (393)
T 1erj_A 205 ------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH-KDSVYSVVFTRDG----QSVVS 273 (393)
T ss_dssp ------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC-SSCEEEEEECTTS----SEEEE
T ss_pred ------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCC-CCCEEEEEECCCC----CEEEE
Confidence 667799999999 9999999999999999999998887777 345 7789999999998 88888
Q ss_pred ee---eEEEEeCCCC------------eEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEeecCC
Q 001202 372 GT---SMMQWDEYGY------------RLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (1124)
Q Consensus 372 g~---~i~~W~~~~~------------~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~ 433 (1124)
|+ ++++|+.... .+.....+|...|..+.+ ++.+++++.|+++++|+...+..
T Consensus 274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~--------- 344 (393)
T 1erj_A 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP--------- 344 (393)
T ss_dssp EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE---------
T ss_pred EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE---------
Confidence 87 8999998653 344556678888855544 77899999999999999766543
Q ss_pred CccceeeecccceeeccCCCceEEEEEcc------CCCEEEEEcCCCeE-EEEcCC
Q 001202 434 TDELKILHLNLPVSYISQNWPVQHVAASK------DGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 434 ~~~~~w~~~~~p~~~~~~~~~I~~va~Sp------dG~~lAvag~dG~v-lwd~~s 482 (1124)
...+.+|..+|.+++|++ +|++||+||.||.+ +|++..
T Consensus 345 -----------~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 345 -----------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp -----------EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred -----------EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 345678999999999986 78999999999999 999753
No 28
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-28 Score=288.63 Aligned_cols=344 Identities=12% Similarity=0.121 Sum_probs=248.5
Q ss_pred cceeEEEEecCCc-EEEEE----------eCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEE
Q 001202 68 GENLQAVWSPDTK-LIAVV----------TSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS 136 (1124)
Q Consensus 68 G~~~~v~wSPDg~-~Lav~----------t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 136 (1124)
..+.+++|+|||+ ++|++ +.||.|++|++..+........ + .+...|.
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~--------------------~-~~~~~v~ 71 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS--------------------L-QVDSKFN 71 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC--------------------C-CCSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE--------------------E-ecCCceE
Confidence 3457899999997 89999 7889999999976542100000 0 1122344
Q ss_pred E--EeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEE
Q 001202 137 N--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (1124)
Q Consensus 137 ~--i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i 214 (1124)
+ +.+++..+++++.||.+++|+.+........ ...+..|...|.++
T Consensus 72 ~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~--------------------------------~~~~~~h~~~v~~~ 119 (416)
T 2pm9_A 72 DLDWSHNNKIIAGALDNGSLELYSTNEANNAINS--------------------------------MARFSNHSSSVKTV 119 (416)
T ss_dssp EEEECSSSSCEEEEESSSCEEEECCSSTTSCCCE--------------------------------EEECCCSSSCCCEE
T ss_pred EEEECCCCCeEEEEccCCeEEEeecccccccccc--------------------------------hhhccCCccceEEE
Confidence 4 4457788999999999998655432111100 01233566677666
Q ss_pred EecCCcceEEEEecC-CcEEEEEecCCceEeeeccccc------ee------cCCCCeE-EEEEccC-CCEEEEEecCCe
Q 001202 215 ELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKID------KE------LGSGDAV-CASIAPE-QQILAVGTRRGV 279 (1124)
Q Consensus 215 ~~s~~~~~~~~~s~d-G~~~~~~~~d~~i~~wd~~~~~------~~------~gh~~~v-~va~spd-g~lLAsGs~Dgt 279 (1124)
.|+ |+ ++++++++.|+++++||..+.+ .. .+|.+.+ +++|+|+ +.++++|+.||+
T Consensus 120 ~~~----------~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 189 (416)
T 2pm9_A 120 KFN----------AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNF 189 (416)
T ss_dssp EEC----------SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSC
T ss_pred EEc----------CCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCC
Confidence 665 66 7889999999999999988765 11 4688888 9999999 789999999999
Q ss_pred EEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCC-CEEEEEECCC---cEEEEEcCCC-eeeEEec-cCCcCce
Q 001202 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSR---GLTVWSVSGC-RLMSTIR-QISLSSI 353 (1124)
Q Consensus 280 V~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG-~~Lasgs~Dg---~I~vWdv~~~-~l~~tl~-~h~~~~V 353 (1124)
|++||+.+ ++.+..+.... ...+|.+.|.+++|+|+| ..+++++.|+ .|++||+.++ ....++. +| ...|
T Consensus 190 v~iwd~~~-~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~-~~~v 265 (416)
T 2pm9_A 190 ASIWDLKA-KKEVIHLSYTS--PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH-QKGI 265 (416)
T ss_dssp EEEEETTT-TEEEEEECCCC--CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC-SSCE
T ss_pred EEEEECCC-CCcceEEeccc--cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc-cCce
Confidence 99999988 77666665221 112248899999999998 6999999999 9999999885 6677777 66 7889
Q ss_pred eeeEEcC-CCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceE--EEEec-c-ceEEeeccCCceeeeEeeecCCe
Q 001202 354 SSPIVKP-NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-G-KCCLNRGVSGMTYARQVIYGEDR 425 (1124)
Q Consensus 354 ~s~~~sp-~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~s~-~-k~~~s~s~d~~v~~w~l~~~~~~ 425 (1124)
.+++|+| ++ ..+++|+ ++++|+..+++.+....+|...| +++++ + +.+++++.|+.+++|++..+...
T Consensus 266 ~~~~~s~~~~----~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 266 LSLDWCHQDE----HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp EEEEECSSCS----SCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred eEEEeCCCCC----CeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 9999999 66 7788776 89999999999998888888888 55666 5 78999999999999998765432
Q ss_pred EEEee----cCCCccceeee------------cccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCC
Q 001202 426 LLVVQ----SEDTDELKILH------------LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 426 l~l~~----~~~~~~~~w~~------------~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg 483 (1124)
..... ....+...|.+ ... .....|..++.+++|||||++||+|+.||.| +|++.+.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 342 LDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp SCC----------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccccCCcccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 11000 00000001110 011 1112366788899999999999999999999 9998764
No 29
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.96 E-value=1.7e-27 Score=268.71 Aligned_cols=239 Identities=9% Similarity=0.063 Sum_probs=199.0
Q ss_pred CCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeE
Q 001202 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVV 280 (1124)
Q Consensus 205 ~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV 280 (1124)
.+|...|.+++|+ |||+.+++++.|+++++||..+++.. .+|...+ +++|+|++++||+|+.||+|
T Consensus 10 ~~h~~~V~~~~fs----------p~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 10 SNRSDRVKGIDFH----------PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp EEECSCEEEEEEC----------SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred cCCCCceEEEEEC----------CCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence 3455667665555 89999999999999999998876543 6788889 99999999999999999999
Q ss_pred EEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC-eeeEEeccCCcCceeeeEEc
Q 001202 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVK 359 (1124)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~-~l~~tl~~h~~~~V~s~~~s 359 (1124)
++||+.+ ++.+..+. + |.+.|.+++|+|+|.+|++|+.||+|++||+.++ .+..++.+| ...|.+++|+
T Consensus 80 ~vwd~~~-~~~~~~~~----~----h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h-~~~v~~v~~~ 149 (304)
T 2ynn_A 80 RVFNYNT-GEKVVDFE----A----HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH-EHFVMCVAFN 149 (304)
T ss_dssp EEEETTT-CCEEEEEE----C----CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCC-CSCEEEEEEC
T ss_pred EEEECCC-CcEEEEEe----C----CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhccc-CCcEEEEEEC
Confidence 9999998 77777777 5 9999999999999999999999999999999876 666788888 7889999999
Q ss_pred CCCCCCcceEEEee---eEEEEeCCCCeEEEE-ecCCcceE--EEEec---cceEEeeccCCceeeeEeeecCCeEEEee
Q 001202 360 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAI-EEGSSERV--LIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (1124)
Q Consensus 360 p~~~~~~~~l~sg~---~i~~W~~~~~~l~~~-~~~~~~~v--~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~ 430 (1124)
|.+. ..+++|+ ++++|+......... ..++...+ +.+.+ ++.+++++.|+++++|++..+..
T Consensus 150 p~~~---~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~------ 220 (304)
T 2ynn_A 150 PKDP---STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC------ 220 (304)
T ss_dssp TTCT---TEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE------
T ss_pred CCCC---CEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc------
Confidence 9531 6788877 999999976654333 33444555 44443 45799999999999999765433
Q ss_pred cCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEE
Q 001202 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (1124)
Q Consensus 431 ~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk 486 (1124)
..++.+|..+|.+++|+|++++||+|+.||++ +||..+++..
T Consensus 221 --------------~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 221 --------------VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (304)
T ss_dssp --------------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred --------------ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 45677899999999999999999999999999 9999987643
No 30
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.96 E-value=1.8e-27 Score=279.55 Aligned_cols=329 Identities=15% Similarity=0.116 Sum_probs=242.6
Q ss_pred eeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEe
Q 001202 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL 149 (1124)
Q Consensus 70 ~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t 149 (1124)
...++|+|||++|++++.+|.+++|++...........+ ....+.++.++++.+++++
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA----------------------DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC----------------------CEEEEEEECSSSCEEEEEE
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC----------------------CceEEEEEecCCCEEEEEE
Confidence 347999999999999999999999998754321100000 0112334566788999999
Q ss_pred cCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecC
Q 001202 150 SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN 229 (1124)
Q Consensus 150 ~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~d 229 (1124)
.||.+++|+.+ ...... ....|...|.++.|+ ||
T Consensus 117 ~dg~i~iwd~~--~~~~~~----------------------------------~~~~h~~~v~~~~~~----------~~ 150 (420)
T 3vl1_A 117 TEGDIKVLDSN--FNLQRE----------------------------------IDQAHVSEITKLKFF----------PS 150 (420)
T ss_dssp TTSCEEEECTT--SCEEEE----------------------------------ETTSSSSCEEEEEEC----------TT
T ss_pred CCCCEEEEeCC--Ccceee----------------------------------ecccccCccEEEEEC----------CC
Confidence 99999885433 221110 123566778777666 78
Q ss_pred CcEEEEEecCCceEeeeccccce---ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCC----
Q 001202 230 GQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG---- 301 (1124)
Q Consensus 230 G~~~~~~~~d~~i~~wd~~~~~~---~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g---- 301 (1124)
|+++++++.|+++++||..+++. +.+|...| +++|+|++++|++|+.||+|++||+.+ ++.+..+......
T Consensus 151 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT-GTTIHTFNRKENPHDGV 229 (420)
T ss_dssp SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECBTTBTTCCE
T ss_pred CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC-CceeEEeecCCCCCCCc
Confidence 99999999999999999887654 36899999 999999999999999999999999988 7777666532100
Q ss_pred ------------CCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcc-e
Q 001202 302 ------------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-P 368 (1124)
Q Consensus 302 ------------~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~-~ 368 (1124)
....|.++|.+++|+|||++|++|+.||.|++||+.++.....+..++...|.+++|+|++ . .
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~ 305 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN----ANY 305 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC----TTE
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCC----CCE
Confidence 0001234455566689999999999999999999999888887766557889999999998 6 7
Q ss_pred EEEee---eEEEEeCCCCeE-EEEecC-CcceEE--EEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeee
Q 001202 369 LMSGT---SMMQWDEYGYRL-YAIEEG-SSERVL--IFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (1124)
Q Consensus 369 l~sg~---~i~~W~~~~~~l-~~~~~~-~~~~v~--~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~ 441 (1124)
+++|+ .+.+|+..+++. +....+ |...+. .++.++.+++++.|+++++|++........+ ..
T Consensus 306 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-----------~~ 374 (420)
T 3vl1_A 306 IYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPA-----------IE 374 (420)
T ss_dssp EEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCE-----------EC
T ss_pred EEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccc-----------ee
Confidence 88776 899999987642 333333 455553 3334889999999999999998764331100 11
Q ss_pred cccceeeccCCCceEEEEEccCCC---EEEEEcCCCeE-EEEcCC
Q 001202 442 LNLPVSYISQNWPVQHVAASKDGM---FLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 442 ~~~p~~~~~~~~~I~~va~SpdG~---~lAvag~dG~v-lwd~~s 482 (1124)
...+..+.+|...|.+++|+|||+ .++++|.+|.+ +|++..
T Consensus 375 ~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 375 FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 123455668889999999999999 77788888998 999754
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.96 E-value=3.5e-27 Score=271.46 Aligned_cols=266 Identities=13% Similarity=0.104 Sum_probs=203.1
Q ss_pred EEEecCCcEEEEEecCCceEeeeccccc-------e-------ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCC
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID-------K-------ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES 288 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~-------~-------~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~ 288 (1124)
+.++|||+++++++ +.++++||..... . ...|...| +++|+|++ .|++|+.||+|+|||+++
T Consensus 36 ~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~- 112 (344)
T 4gqb_B 36 ARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDE- 112 (344)
T ss_dssp EEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECT-
T ss_pred EEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccC-
Confidence 44458999888766 7788888743110 0 02345668 99999996 578999999999999988
Q ss_pred CceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcce
Q 001202 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP 368 (1124)
Q Consensus 289 ~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~ 368 (1124)
++..........| |++.|++|+|+|||++||+|+.||+|++||+.+++++.++.+| ...|.+++|+|++. ..
T Consensus 113 ~~~~~~~~~~~~~----H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h-~~~V~~~~~~~~~~---~~ 184 (344)
T 4gqb_B 113 NETLIVSKFCKYE----HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH-AAQVTCVAASPHKD---SV 184 (344)
T ss_dssp TSSCEEEEEEEEC----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECSSCT---TE
T ss_pred CCceeEeeccccC----CCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc-CCceEEEEecCCCC---Cc
Confidence 6555544433335 9999999999999999999999999999999999999999998 78999999999872 35
Q ss_pred EEEee---eEEEEeCCCCeEEEEecC--CcceE--EEEec--cceEEeeccCCceeeeEeeecCCeEEEeecCCCcccee
Q 001202 369 LMSGT---SMMQWDEYGYRLYAIEEG--SSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (1124)
Q Consensus 369 l~sg~---~i~~W~~~~~~l~~~~~~--~~~~v--~~~s~--~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w 439 (1124)
+++|+ ++++|+..+++....... +...+ +++.+ ++.+++++.|+++++|++..+..
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~--------------- 249 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC--------------- 249 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C---------------
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE---------------
Confidence 67776 899999998887766532 33344 44554 45788999999999999876554
Q ss_pred eecccceeeccCCCceEEEEEccCC-CEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecC--CEEE-EEEE
Q 001202 440 LHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIV-VCNY 514 (1124)
Q Consensus 440 ~~~~~p~~~~~~~~~I~~va~SpdG-~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~--~~li-v~~~ 514 (1124)
..++.+|..+|++++||||| ++||+|+.||++ +||+.+++...+ ..|+ -.|.+++|.+ ..++ +|+.
T Consensus 250 -----~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~--~~H~--~~V~~v~~sp~~~~llas~s~ 320 (344)
T 4gqb_B 250 -----VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS--QAHR--DFVRDATWSPLNHSLLTTVGW 320 (344)
T ss_dssp -----CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE--CCCS--SCEEEEEECSSSTTEEEEEET
T ss_pred -----EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE--cCCC--CCEEEEEEeCCCCeEEEEEcC
Confidence 56778999999999999998 589999999999 999999875433 2233 2478899963 3455 4433
Q ss_pred ecCCCeEEEEEeeCC
Q 001202 515 IDSSNTYELLFYPRY 529 (1124)
Q Consensus 515 ~~~~~~~elrly~~~ 529 (1124)
| ..|++|...
T Consensus 321 ---D--~~v~~w~v~ 330 (344)
T 4gqb_B 321 ---D--HQVVHHVVP 330 (344)
T ss_dssp ---T--SCEEEEECC
T ss_pred ---C--CeEEEEECC
Confidence 2 368899763
No 32
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=2.1e-26 Score=261.49 Aligned_cols=290 Identities=20% Similarity=0.229 Sum_probs=211.8
Q ss_pred hhcceeEEEEecC-CcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEE--EeecC
Q 001202 66 REGENLQAVWSPD-TKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDN 142 (1124)
Q Consensus 66 ~~G~~~~v~wSPD-g~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~d~ 142 (1124)
+.|.+.+++|+|| +++||+++.||+|++||+........ . ....+.++...|.+ +.+++
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~----------~--------~~~~l~~h~~~V~~~~~s~dg 98 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG----------I--------PQRALRGHSHFVSDVVISSDG 98 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE----------E--------EEEEECCCSSCEEEEEECTTS
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc----------e--------eeEEEeCCCCCEEEEEECCCC
Confidence 4688999999998 68999999999999999976432100 0 00122334445655 44677
Q ss_pred CeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcce
Q 001202 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (1124)
Q Consensus 143 ~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~ 222 (1124)
..+++++.||.++.+.......... ...+...+.
T Consensus 99 ~~l~s~~~d~~i~~~~~~~~~~~~~------------------------------------~~~~~~~~~---------- 132 (340)
T 4aow_A 99 QFALSGSWDGTLRLWDLTTGTTTRR------------------------------------FVGHTKDVL---------- 132 (340)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEE------------------------------------EECCSSCEE----------
T ss_pred CEEEEEcccccceEEeecccceeee------------------------------------ecCCCCcee----------
Confidence 8899999999998754433211110 111222232
Q ss_pred EEEEecCCcEEEEEecCCceEeeecccccee----cCCCCeE-EEEEccCC--CEEEEEecCCeEEEEEcCCCCceeEEE
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQ--QILAVGTRRGVVELYDLAESASLIRTV 295 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~----~gh~~~v-~va~spdg--~lLAsGs~DgtV~vwd~~~~~~~~~~l 295 (1124)
...++++++.+++++.|+.+++|+....... .+|.+.+ +++|++++ .++++|+.|++|++||+.+ ++....+
T Consensus 133 ~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~ 211 (340)
T 4aow_A 133 SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNH 211 (340)
T ss_dssp EEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-TEEEEEE
T ss_pred EEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC-CceeeEe
Confidence 3445588888999999999999997654332 5788888 99998864 5789999999999999988 7777766
Q ss_pred eeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee--
Q 001202 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (1124)
Q Consensus 296 ~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~-- 373 (1124)
. + |.++|.+++|+|||++|++|+.||.|++||+.+...+..+.++ ..+.++.++|++ ..+.++.
T Consensus 212 ~----~----h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~----~~~~~~~d~ 277 (340)
T 4aow_A 212 I----G----HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNR----YWLCAATGP 277 (340)
T ss_dssp C----C----CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEEECSSS----SEEEEEETT
T ss_pred c----C----CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeeecCCCC----ceeeccCCC
Confidence 6 5 9999999999999999999999999999999999998888765 578888888875 4444333
Q ss_pred eEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCC
Q 001202 374 SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (1124)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~ 453 (1124)
++++|+.+++.+......+ . ......+|..
T Consensus 278 ~i~iwd~~~~~~~~~~~~~-------------------------------~-------------------~~~~~~~h~~ 307 (340)
T 4aow_A 278 SIKIWDLEGKIIVDELKQE-------------------------------V-------------------ISTSSKAEPP 307 (340)
T ss_dssp EEEEEETTTTEEEEEECCC---------------------------------------------------------CCCC
T ss_pred EEEEEECCCCeEEEecccc-------------------------------c-------------------eeeeccCCCC
Confidence 7777777665544332210 0 0123346788
Q ss_pred ceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 454 ~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
+|.+++|+|||++||+||.||.| +||+.+|.
T Consensus 308 ~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 308 QCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999999999999999999 99999874
No 33
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.96 E-value=2.5e-26 Score=259.21 Aligned_cols=276 Identities=16% Similarity=0.184 Sum_probs=224.1
Q ss_pred ecccccceEEEEe--ecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeeccc
Q 001202 127 PFAEKGLSVSNIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHK 204 (1124)
Q Consensus 127 ~~~~~~~~v~~i~--~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~ 204 (1124)
.+.++...|.+++ ++++.+++++.||.+++|.... ..... ..
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~--~~~~~----------------------------------~~ 61 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEK----------------------------------TI 61 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEE----------------------------------EE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC--cccch----------------------------------hh
Confidence 3445666676655 5667899999999999854332 11110 12
Q ss_pred CCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeE
Q 001202 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVV 280 (1124)
Q Consensus 205 ~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV 280 (1124)
..+...|.++.|+ |||+.+++++.|+++++||..+++.. .+|.+.+ +++|+|++++|++|+.||+|
T Consensus 62 ~~h~~~v~~~~~~----------~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i 131 (312)
T 4ery_A 62 SGHKLGISDVAWS----------SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131 (312)
T ss_dssp CCCSSCEEEEEEC----------TTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred ccCCCceEEEEEc----------CCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence 3456667666655 88999999999999999998876543 6899999 99999999999999999999
Q ss_pred EEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcC
Q 001202 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (1124)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp 360 (1124)
++||+.+ ++....+. + |.++|.+++|+|+|..|++|+.||.|++||+.+++.+.++..++...+..++|+|
T Consensus 132 ~iwd~~~-~~~~~~~~----~----~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (312)
T 4ery_A 132 RIWDVKT-GKCLKTLP----A----HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202 (312)
T ss_dssp EEEETTT-CCEEEEEC----C----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT
T ss_pred EEEECCC-CEEEEEec----C----CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC
Confidence 9999987 77777666 4 8999999999999999999999999999999999888887665567899999999
Q ss_pred CCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceE----EEEec--cceEEeeccCCceeeeEeeecCCeEEEeec
Q 001202 361 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV----LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQS 431 (1124)
Q Consensus 361 ~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v----~~~s~--~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~ 431 (1124)
++ +.+++++ .+++|+..++++.....+|.... ..+.. ++.+++++.|+.+++|++..+..
T Consensus 203 ~~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~------- 271 (312)
T 4ery_A 203 NG----KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI------- 271 (312)
T ss_dssp TS----SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE-------
T ss_pred CC----CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh-------
Confidence 98 7888776 89999999999988887765432 23333 67899999999999999765443
Q ss_pred CCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEc--CCCeE-EEEcC
Q 001202 432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG--LHGLI-LYDIR 481 (1124)
Q Consensus 432 ~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag--~dG~v-lwd~~ 481 (1124)
...+.+|..+|.+++|+|+++++|+++ .||.+ +|+..
T Consensus 272 -------------~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 272 -------------VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp -------------EEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred -------------hhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 456778999999999999999999997 69999 99864
No 34
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=3.4e-27 Score=273.83 Aligned_cols=302 Identities=12% Similarity=0.101 Sum_probs=205.3
Q ss_pred ceeEEEEecCCcEEEEEeCC-------CeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeec
Q 001202 69 ENLQAVWSPDTKLIAVVTSS-------LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD 141 (1124)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~d-------g~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d 141 (1124)
++.+++|+|||++||+|+.+ +.|++|++......... . ........+..+...+.|++++
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~-----------~--~~~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE-----------Q--FHILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH-----------H--EEEEEEEECCTTSCCCCEEEEE
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee-----------e--eeeeeEEEccCCCCceEEEEeC
Confidence 68899999999999998753 36999999764321100 0 0111122344555678888888
Q ss_pred CCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcc
Q 001202 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (1124)
Q Consensus 142 ~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~ 221 (1124)
++.+++|..++...+ |.+..+.. ++-..+..
T Consensus 83 ~~~~~~g~~~~~~~l--~s~~~d~~--------------------------------------------~r~~~~~~--- 113 (365)
T 4h5i_A 83 KGIILVGCNENSTKI--TQGKGNKH--------------------------------------------LRKFKYDK--- 113 (365)
T ss_dssp TTEEEEECCCCHHHH--HHTSCCCC--------------------------------------------EEEEEEET---
T ss_pred CCEEEEEECCCccEE--EEecCCCc--------------------------------------------EEEEEecC---
Confidence 888888876654332 33221111 11000100
Q ss_pred eEEEEecCCcEEEEEecCCceEeeeccccceecCCCCeE-EEEEccCCCEEEEE--ecCCeEEEEEcCCCCceeEEEeec
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVG--TRRGVVELYDLAESASLIRTVSLY 298 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v-~va~spdg~lLAsG--s~DgtV~vwd~~~~~~~~~~l~~~ 298 (1124)
.++. ++.+.........++.+.+ +++|||||+++|+| +.|++|+|||+.+ ++.+.++.
T Consensus 114 ------~~~~----------~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~-~~~~~~~~-- 174 (365)
T 4h5i_A 114 ------VNDQ----------LEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD-LTEKFEIE-- 174 (365)
T ss_dssp ------TTTE----------EEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT-TEEEEEEE--
T ss_pred ------CCce----------EEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC-CcEEEEeC--
Confidence 0111 1111111111113456677 99999999997655 4789999999988 77777766
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeee-EEeccCCcCceeeeEEcCCCCCCcceEEEee----
Q 001202 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM-STIRQISLSSISSPIVKPNQDCKYEPLMSGT---- 373 (1124)
Q Consensus 299 ~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~-~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---- 373 (1124)
|.+.|.+|+|||||+++++++.| ++.+|+..++... ......+...|.+++|+|++ ..+++++
T Consensus 175 -------~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg----~~l~~~s~d~~ 242 (365)
T 4h5i_A 175 -------TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADD----TVLIAASLKKG 242 (365)
T ss_dssp -------CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT----EEEEEEEESSS
T ss_pred -------CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC----CEEEEEecCCc
Confidence 78889999999999999999966 5555655554443 33333236789999999998 7777654
Q ss_pred ---eEEEEeCCCCeEE----EEecCCcceEE--EEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecc
Q 001202 374 ---SMMQWDEYGYRLY----AIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (1124)
Q Consensus 374 ---~i~~W~~~~~~l~----~~~~~~~~~v~--~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~ 443 (1124)
.+..|+....... ....+|...|. +|++ ++.+++++.|+++++|++..+..
T Consensus 243 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~------------------- 303 (365)
T 4h5i_A 243 KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM------------------- 303 (365)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE-------------------
T ss_pred ceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE-------------------
Confidence 5678887765542 23457777885 4555 88999999999999999765443
Q ss_pred cceee-ccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCC
Q 001202 444 LPVSY-ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 444 ~p~~~-~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg 483 (1124)
..++ .+|..+|++++|||||++||+||.|++| +|++..+
T Consensus 304 -~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 304 -SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp -EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred -EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 3343 5899999999999999999999999999 9998643
No 35
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.96 E-value=1.3e-26 Score=262.30 Aligned_cols=311 Identities=17% Similarity=0.167 Sum_probs=235.0
Q ss_pred cceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEE--EeecCCeE
Q 001202 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHM 145 (1124)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~d~~~l 145 (1124)
+.+.+++|||||+.++++..++.+..|........ ....++...|++ +.+++..+
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~h~~~v~~~~~~~~~~~l 66 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ-----------------------INTLNHGEVVCAVTISNPTRHV 66 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE-----------------------EEEECCSSCCCEEEECSSSSEE
T ss_pred CceeEEEECCCCCEEEeecCCCcEeccccCCcccc-----------------------ceeccCCCceEEEEEecCCcEE
Confidence 55678999999999999887775544432211100 001122333444 44566677
Q ss_pred EEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEE
Q 001202 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (1124)
Q Consensus 146 lv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~ 225 (1124)
++++ ||.+++|+.+....... ........+...|.++.|+
T Consensus 67 ~~~~-dg~i~iw~~~~~~~~~~-------------------------------~~~~~~~~~~~~v~~~~~~-------- 106 (337)
T 1gxr_A 67 YTGG-KGCVKVWDISHPGNKSP-------------------------------VSQLDCLNRDNYIRSCKLL-------- 106 (337)
T ss_dssp EEEC-BSEEEEEETTSTTCCSC-------------------------------SEEEECSCTTSBEEEEEEC--------
T ss_pred EEcC-CCeEEEEECCCCCceee-------------------------------eecccccCCCCcEEEEEEc--------
Confidence 7776 99999865543211100 0001122456677766665
Q ss_pred EecCCcEEEEEecCCceEeeeccccce-----ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeecc
Q 001202 226 LYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1124)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~wd~~~~~~-----~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~ 299 (1124)
|||+.+++++.++.+++|+..+++. ..+|...+ +++|+|+++++++|+.||.|++||+.+ ++....+.
T Consensus 107 --~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~--- 180 (337)
T 1gxr_A 107 --PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQ--- 180 (337)
T ss_dssp --TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEEC---
T ss_pred --CCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-Cceeeeee---
Confidence 7888899999999999999876542 25788888 999999999999999999999999987 77676666
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEE
Q 001202 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (1124)
Q Consensus 300 ~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~ 376 (1124)
+ |.+.|.+++|+|||..|++++.||.|++||+.+++....+.. ...+.+++|+|++ +.++++. .+.
T Consensus 181 -~----~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~v~~~~~s~~~----~~l~~~~~~~~i~ 249 (337)
T 1gxr_A 181 -G----HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF--TSQIFSLGYCPTG----EWLAVGMESSNVE 249 (337)
T ss_dssp -C----CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECTTS----SEEEEEETTSCEE
T ss_pred -c----ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC--CCceEEEEECCCC----CEEEEEcCCCcEE
Confidence 4 899999999999999999999999999999999988887753 5679999999998 7777765 899
Q ss_pred EEeCCCCeEEEEecCCcceEEE--Eec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCC
Q 001202 377 QWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (1124)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~--~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~ 453 (1124)
+|+..+.+... ..+|...+.. +++ ++.+++++.|+.+++|++..+.. .....|..
T Consensus 250 ~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~---------------------~~~~~~~~ 307 (337)
T 1gxr_A 250 VLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS---------------------IFQSKESS 307 (337)
T ss_dssp EEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------------EEEEECSS
T ss_pred EEECCCCCeEE-EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE---------------------EEEecCCC
Confidence 99999888654 4577778854 444 78899999999999999765443 12235778
Q ss_pred ceEEEEEccCCCEEEEEcCCCeE-EEEc
Q 001202 454 PVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 454 ~I~~va~SpdG~~lAvag~dG~v-lwd~ 480 (1124)
+|.+++|+|+|+++++++.||.+ +|++
T Consensus 308 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 308 SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 89999999999999999999999 9986
No 36
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=2.4e-26 Score=263.77 Aligned_cols=297 Identities=14% Similarity=0.141 Sum_probs=215.5
Q ss_pred eecccccceEEEEee--------cCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCC
Q 001202 126 LPFAEKGLSVSNIVS--------DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSG 197 (1124)
Q Consensus 126 ~~~~~~~~~v~~i~~--------d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~ 197 (1124)
..+.++...|.+++. ++..+++|+.||.|++|+..........
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~----------------------------- 65 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF----------------------------- 65 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS-----------------------------
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc-----------------------------
Confidence 345677778888865 6678999999999998655432110000
Q ss_pred CeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEE
Q 001202 198 AFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAV 273 (1124)
Q Consensus 198 ~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAs 273 (1124)
......+.+|...|.++.|+ ++|+++++++.|+++++||..+++.. .+|.+.| +++|+|++++|++
T Consensus 66 ~~~~~~l~~h~~~V~~~~~~----------~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s 135 (343)
T 2xzm_R 66 GIPHKALTGHNHFVSDLALS----------QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135 (343)
T ss_dssp EEEEEEECCCSSCEEEEEEC----------SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEE
T ss_pred ccccchhccCCCceEEEEEC----------CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEE
Confidence 00011244667777766555 88999999999999999999877543 6899999 9999999999999
Q ss_pred EecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCC----------CEEEEEECCCcEEEEEcCCCeeeE
Q 001202 274 GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN----------SAFAVGWKSRGLTVWSVSGCRLMS 343 (1124)
Q Consensus 274 Gs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG----------~~Lasgs~Dg~I~vWdv~~~~l~~ 343 (1124)
|+.||+|++||+.. . ...... ...+|.+.|.+++|+|++ .+|++|+.||+|++||. ......
T Consensus 136 ~~~d~~i~~wd~~~-~-~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~ 207 (343)
T 2xzm_R 136 AGAEREIKLWNILG-E-CKFSSA-----EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRY 207 (343)
T ss_dssp EETTSCEEEEESSS-C-EEEECC-----TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEE
T ss_pred EcCCCEEEEEeccC-C-ceeeee-----cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeE
Confidence 99999999999974 2 222111 112489999999999997 79999999999999995 456677
Q ss_pred EeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCC-CCeEEEEecCCcceE--EEEeccceEEeeccCCceeee
Q 001202 344 TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY-GYRLYAIEEGSSERV--LIFSFGKCCLNRGVSGMTYAR 417 (1124)
Q Consensus 344 tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~-~~~l~~~~~~~~~~v--~~~s~~k~~~s~s~d~~v~~w 417 (1124)
++.+| ...|.+++|+|++ +.+++|+ ++++|+.. ......... +...| ++|++...+++++.|+.+++|
T Consensus 208 ~~~~h-~~~v~~~~~s~~g----~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw 281 (343)
T 2xzm_R 208 TFKAH-ESNVNHLSISPNG----KYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIF 281 (343)
T ss_dssp EEECC-SSCEEEEEECTTS----SEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEE
T ss_pred EEcCc-cccceEEEECCCC----CEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEE
Confidence 88888 7889999999998 8899887 89999984 333322221 23345 555664455667788899999
Q ss_pred EeeecCCeE-EEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCC
Q 001202 418 QVIYGEDRL-LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 418 ~l~~~~~~l-~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg 483 (1124)
++..+.... ...... .........+|..+|.+++|+|+|++||+|+.||.+ +|++.++
T Consensus 282 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 282 NLMTQSKAPVCTIEAE--------PITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp ESSSCCSCSEEECCCC--------SGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EeCCCCCCceEEeecC--------cchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 986554310 000000 000011223688899999999999999999999999 9998764
No 37
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.95 E-value=4e-26 Score=262.41 Aligned_cols=284 Identities=15% Similarity=0.173 Sum_probs=211.3
Q ss_pred EEEEecCCcEEEEEecCCceEeeeccccce------ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCC-ceeEE
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDK------ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA-SLIRT 294 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~------~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~-~~~~~ 294 (1124)
.++++|||+++++++.|+++++|+...... ..+|.+.| +++|+|++++||+|+.||+|++|++.... ..+.+
T Consensus 21 ~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~ 100 (345)
T 3fm0_A 21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTT 100 (345)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEE
Confidence 455558999999999999999999876531 15899999 99999999999999999999999987622 34455
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC---eeeEEeccCCcCceeeeEEcCCCCCCcceEEE
Q 001202 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (1124)
Q Consensus 295 l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~---~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~s 371 (1124)
+. + |.++|.+++|+|||++||+|+.|++|++||+.++ .++..+.+| ...|.+++|+|++ +.+++
T Consensus 101 ~~----~----h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~----~~l~s 167 (345)
T 3fm0_A 101 LE----G----HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH-TQDVKHVVWHPSQ----ELLAS 167 (345)
T ss_dssp EC----C----CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC-CSCEEEEEECSSS----SCEEE
T ss_pred cc----C----CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc-CCCeEEEEECCCC----CEEEE
Confidence 55 5 9999999999999999999999999999999765 346677777 7889999999998 78888
Q ss_pred ee---eEEEEeCCCCe--EEEEecCCcceEEEE--ec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecc
Q 001202 372 GT---SMMQWDEYGYR--LYAIEEGSSERVLIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (1124)
Q Consensus 372 g~---~i~~W~~~~~~--l~~~~~~~~~~v~~~--s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~ 443 (1124)
|+ ++++|+..+++ +.....+|...|..+ ++ ++.+++++.|+++++|+.........+.... ....|.
T Consensus 168 ~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~--~~~~~~--- 242 (345)
T 3fm0_A 168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSG--SDPSWK--- 242 (345)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC-----CEEE---
T ss_pred EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeec--cCCccc---
Confidence 87 89999988775 345678899899555 44 8899999999999999975433210000000 001121
Q ss_pred cceeecc-CCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcE------EEecCcCceeeeEEEEEEecCC---EEEEE
Q 001202 444 LPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW------RVFGDITQEQKIQSKGLLWLGK---IIVVC 512 (1124)
Q Consensus 444 ~p~~~~~-~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~w------k~f~~~~~e~~~~v~gl~W~~~---~liv~ 512 (1124)
+..++.+ |...|.+++|+|+|..+|+++.|+.+ +|+...+.- .........+.-.|..+.|.++ .+++|
T Consensus 243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~ 322 (345)
T 3fm0_A 243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC 322 (345)
T ss_dssp EEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEE
T ss_pred eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEc
Confidence 1223333 88899999999999999999999999 999876531 1000000111224778899854 45555
Q ss_pred EEecCCCeEEEEEeeCC
Q 001202 513 NYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 513 ~~~~~~~~~elrly~~~ 529 (1124)
+. +..|++|+..
T Consensus 323 s~-----Dg~v~~W~~~ 334 (345)
T 3fm0_A 323 SD-----DGEVAFWKYQ 334 (345)
T ss_dssp ET-----TSCEEEEEEC
T ss_pred CC-----CCcEEEEEec
Confidence 32 2379999774
No 38
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.1e-26 Score=260.61 Aligned_cols=283 Identities=17% Similarity=0.274 Sum_probs=208.4
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccc--e---e-cC-CCCeE-EEEEccCCCEEEEEe
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--K---E-LG-SGDAV-CASIAPEQQILAVGT 275 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~--~---~-~g-h~~~v-~va~spdg~lLAsGs 275 (1124)
+.+|...|.++.++ ++ ++++++.|+++++|+...+. . . .+ |.+.| +++|+|++++||+|+
T Consensus 10 ~~~h~~~v~~~~~s----------~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 10 LKLYKEKIWSFDFS----------QG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp EECCSSCEEEEEEE----------TT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred eccCCCceeeeccC----------CC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence 44677777766655 44 78888999999999986532 1 1 34 99999 999999999999999
Q ss_pred cCCeEEEEEcCCC------CceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcC-C---CeeeEEe
Q 001202 276 RRGVVELYDLAES------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-G---CRLMSTI 345 (1124)
Q Consensus 276 ~DgtV~vwd~~~~------~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~-~---~~l~~tl 345 (1124)
.||+|++|++... ......+. + |.++|.+++|+|||++||+|+.|++|++||+. + .+++.++
T Consensus 78 ~D~~v~iw~~~~~~~~~~~~~~~~~~~----~----h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~ 149 (330)
T 2hes_X 78 FDSTVSIWAKEESADRTFEMDLLAIIE----G----HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVL 149 (330)
T ss_dssp TTSCEEEEEC-------CCCEEEEEEC------------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEE
T ss_pred CCCcEEEEEcccCcCccccceeEEEEc----C----CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEe
Confidence 9999999998531 22344444 5 99999999999999999999999999999994 2 2567788
Q ss_pred ccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCC--eEEEEecCCcceEEEEec-----cceEEeeccCCcee
Q 001202 346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--RLYAIEEGSSERVLIFSF-----GKCCLNRGVSGMTY 415 (1124)
Q Consensus 346 ~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~--~l~~~~~~~~~~v~~~s~-----~k~~~s~s~d~~v~ 415 (1124)
.+| ...|.+++|+|++ ..+++|+ ++++|+..++ +++....+|...|..+.+ +..+++++.|++++
T Consensus 150 ~~h-~~~v~~v~~~p~~----~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~ 224 (330)
T 2hes_X 150 QEH-SQDVKHVIWHPSE----ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVR 224 (330)
T ss_dssp CCC-SSCEEEEEECSSS----SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEE
T ss_pred ccC-CCceEEEEECCCC----CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEE
Confidence 888 7889999999998 8888887 8999998765 677788899999966555 34689999999999
Q ss_pred eeEeeecCCeEEEeecCCCccceeeecccceeecc-CCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCc
Q 001202 416 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQ 493 (1124)
Q Consensus 416 ~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~-~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~ 493 (1124)
+|++..+... ....|. ....+.+ |..+|.+++|++++ ++|+||.||.+ +|+..++.|+.+.....
T Consensus 225 iw~~~~~~~~---------~~~~~~---~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~ 291 (330)
T 2hes_X 225 VWKYMGDDED---------DQQEWV---CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRAL 291 (330)
T ss_dssp EEEEEEECTT---------SCEEEE---EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESC
T ss_pred EEEecCCCcc---------ccceeE---EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccc
Confidence 9998765320 001111 1223333 88899999999765 89999999999 99999998865432211
Q ss_pred eee-eEEEEEEecC----CEEEEEEEecCCCeEEEEEeeCC
Q 001202 494 EQK-IQSKGLLWLG----KIIVVCNYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 494 e~~-~~v~gl~W~~----~~liv~~~~~~~~~~elrly~~~ 529 (1124)
... ..+..+.|.+ ..+++|+. +..+++|+.+
T Consensus 292 ~h~~~~v~~v~~~~~~~~~~las~s~-----Dg~v~~W~~~ 327 (330)
T 2hes_X 292 CHGVYEINVVKWLELNGKTILATGGD-----DGIVNFWSLE 327 (330)
T ss_dssp TTTTSCEEEEEEC-----CCEEEEET-----TSEEEEEEC-
T ss_pred ccccceEEEEEEecCCCceEEEEecC-----CCcEEEEEec
Confidence 111 2466778864 35555533 2379999763
No 39
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.95 E-value=5.3e-26 Score=266.28 Aligned_cols=260 Identities=14% Similarity=0.177 Sum_probs=191.4
Q ss_pred ceEEEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeChH------HH------hhhcceeEEEEecCCcEEEEEeCCC
Q 001202 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSE------SV------QREGENLQAVWSPDTKLIAVVTSSL 89 (1124)
Q Consensus 22 ~~iv~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~------sl------~~~G~~~~v~wSPDg~~Lav~t~dg 89 (1124)
...++|||||++||++++++++||+.. .+..+..+..... .+ .....+.+++|+|||++||+++.||
T Consensus 67 V~~v~fspdg~~la~g~~~~v~i~~~~-~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~ 145 (393)
T 1erj_A 67 VCCVKFSNDGEYLATGCNKTTQVYRVS-DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 145 (393)
T ss_dssp CCEEEECTTSSEEEEECBSCEEEEETT-TCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCCCCEEEEEcCCcEEEEEec-CCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCC
Confidence 345889999999999999999999995 5554444322110 00 0112367999999999999999999
Q ss_pred eEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEE--eecCCeEEEEecCCcEEEEeccCccccce
Q 001202 90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAF 167 (1124)
Q Consensus 90 ~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~d~~~llv~t~dg~v~~~~Wd~~~~~~~ 167 (1124)
.|++||+..+.... .+.++...|.++ .++++.+++++.||.+++| +.......
T Consensus 146 ~i~iwd~~~~~~~~-----------------------~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iw--d~~~~~~~ 200 (393)
T 1erj_A 146 LIRIWDIENRKIVM-----------------------ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW--DLRTGQCS 200 (393)
T ss_dssp CEEEEETTTTEEEE-----------------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEE--ETTTTEEE
T ss_pred eEEEEECCCCcEEE-----------------------EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEE--ECCCCeeE
Confidence 99999986542211 122334445554 4567889999999999885 43322111
Q ss_pred eeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEec-CCcEEEEEecCCceEeee
Q 001202 168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAE 246 (1124)
Q Consensus 168 ~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~-dG~~~~~~~~d~~i~~wd 246 (1124)
. .......+..+. ++| ||+++++++.|+++++||
T Consensus 201 ~-----------------------------------~~~~~~~v~~~~----------~~~~~~~~l~~~s~d~~v~iwd 235 (393)
T 1erj_A 201 L-----------------------------------TLSIEDGVTTVA----------VSPGDGKYIAAGSLDRAVRVWD 235 (393)
T ss_dssp E-----------------------------------EEECSSCEEEEE----------ECSTTCCEEEEEETTSCEEEEE
T ss_pred E-----------------------------------EEEcCCCcEEEE----------EECCCCCEEEEEcCCCcEEEEE
Confidence 0 001122344444 446 899999999999999999
Q ss_pred cccccee----------cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCC-----------ceeEEEeeccCCCCC
Q 001202 247 FIKIDKE----------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA-----------SLIRTVSLYDWGYSM 304 (1124)
Q Consensus 247 ~~~~~~~----------~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~-----------~~~~~l~~~~~g~~~ 304 (1124)
..+++.. .+|.+.| +++|+|++++||+|+.||+|++||+.... .+..++. +
T Consensus 236 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~----~--- 308 (393)
T 1erj_A 236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI----G--- 308 (393)
T ss_dssp TTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEE----C---
T ss_pred CCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEe----c---
Confidence 8765432 4788999 99999999999999999999999997521 1223333 4
Q ss_pred CCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCC
Q 001202 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (1124)
Q Consensus 305 ~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~ 361 (1124)
|.+.|.+++|+|+|.+|++|+.||+|++||+.++..+.++.+| ...|.++++++.
T Consensus 309 -h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h-~~~v~~v~~~~~ 363 (393)
T 1erj_A 309 -HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH-RNSVISVAVANG 363 (393)
T ss_dssp -CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECSS
T ss_pred -ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC-CCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999998 678999998875
No 40
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.95 E-value=8.8e-27 Score=269.42 Aligned_cols=275 Identities=14% Similarity=0.130 Sum_probs=204.0
Q ss_pred CCCceEEEEEecCCcceEEEEecCCcEEEEEec------CCceEeeeccccce-------ecCCCCeE-EEEEccCCCEE
Q 001202 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS------KKGLKLAEFIKIDK-------ELGSGDAV-CASIAPEQQIL 271 (1124)
Q Consensus 206 ~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~------d~~i~~wd~~~~~~-------~~gh~~~v-~va~spdg~lL 271 (1124)
.|...|.++.|| |||+++++++. |+++++|+..++.. ..+|.+.| +++|+|+++++
T Consensus 40 ~H~~~V~~v~fS----------pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l 109 (357)
T 4g56_B 40 CMEVQIGAVRYR----------RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL 109 (357)
T ss_dssp CCCSEEEEEEEC----------SSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE
T ss_pred cccCCEEEEEEC----------CCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE
Confidence 456677766665 88999998887 55677777654432 14688888 99999998755
Q ss_pred EEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcC
Q 001202 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS 351 (1124)
Q Consensus 272 AsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~ 351 (1124)
+|+.||+|+|||+.+ ++..........+ |+++|.+++|+|||++|++|+.||+|++||+.+++++.++.+| ..
T Consensus 110 -~~s~dg~v~lWd~~~-~~~~~~~~~~~~~----h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h-~~ 182 (357)
T 4g56_B 110 -VASDSGAVELWEILE-KESLLVNKFAKYE----HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH-SS 182 (357)
T ss_dssp -EEETTSCEEEC---------CCCCEEECC----CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCC-SS
T ss_pred -EEECCCEEEEeeccc-cceeEEEeeccCC----CCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-CC
Confidence 567899999999987 4433222211224 9999999999999999999999999999999999999999998 78
Q ss_pred ceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEec--CCcceE--EEEec--cceEEeeccCCceeeeEeeec
Q 001202 352 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE--GSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYG 422 (1124)
Q Consensus 352 ~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~--~~~~~v--~~~s~--~k~~~s~s~d~~v~~w~l~~~ 422 (1124)
.|++++|+|++. ..+++++ ++++|+..+++...... .+...+ +++++ ++.+++++.|+.+++|++..+
T Consensus 183 ~v~~v~~s~~~~---~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~ 259 (357)
T 4g56_B 183 EVNCVAACPGKD---TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP 259 (357)
T ss_dssp CEEEEEECTTCS---SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG
T ss_pred CEEEEEEccCCC---ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC
Confidence 899999999872 3566665 89999998877655433 344556 44555 457889999999999998765
Q ss_pred CCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCC-CEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEE
Q 001202 423 EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSK 500 (1124)
Q Consensus 423 ~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG-~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~ 500 (1124)
.. ...+.+|..+|++++|||+| ++||+|+.||++ +||+.+++...+. .|. -.|.
T Consensus 260 ~~--------------------~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~--~~V~ 315 (357)
T 4g56_B 260 DS--------------------AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SHR--DFVT 315 (357)
T ss_dssp GG--------------------CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCS--SCEE
T ss_pred cE--------------------eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCC--CCEE
Confidence 44 45677899999999999998 589999999999 9999998754332 232 2478
Q ss_pred EEEec---CCEEEEEEEecCCCeEEEEEeeCC
Q 001202 501 GLLWL---GKIIVVCNYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 501 gl~W~---~~~liv~~~~~~~~~~elrly~~~ 529 (1124)
+++|. +..+++|+. + ..|++|+..
T Consensus 316 ~vafsP~d~~~l~s~s~---D--g~v~iW~~~ 342 (357)
T 4g56_B 316 GVAWSPLDHSKFTTVGW---D--HKVLHHHLP 342 (357)
T ss_dssp EEEECSSSTTEEEEEET---T--SCEEEEECC
T ss_pred EEEEeCCCCCEEEEEcC---C--CeEEEEECC
Confidence 89996 346666643 2 379999873
No 41
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.95 E-value=1.5e-25 Score=254.76 Aligned_cols=272 Identities=17% Similarity=0.187 Sum_probs=209.8
Q ss_pred ecCCCCeE-EEEEccCC-CEEEEEecCCeEEEEEcCCCC----ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE
Q 001202 253 ELGSGDAV-CASIAPEQ-QILAVGTRRGVVELYDLAESA----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (1124)
Q Consensus 253 ~~gh~~~v-~va~spdg-~lLAsGs~DgtV~vwd~~~~~----~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs 326 (1124)
+.||.+.| +++|+|++ ++||+|+.||+|++|++.... ..+.++. | |.++|.+++|+|||++|++|+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~----~----h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK----G----HSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE----C----CSSCEEEEEECTTSSEEEEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe----C----CcccEEEEEECCCCCEEEEEe
Confidence 37999999 99999965 899999999999999986422 2344555 5 999999999999999999999
Q ss_pred CCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec--
Q 001202 327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-- 401 (1124)
Q Consensus 327 ~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~-- 401 (1124)
.|++|++||+.+++++.++.+| ...|.+++|+|++ ..+++|+ ++++|+..+. ......+|...+..+.+
T Consensus 85 ~D~~v~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~~----~~l~s~s~D~~i~vwd~~~~-~~~~~~~h~~~v~~~~~~~ 158 (319)
T 3frx_A 85 WDKTLRLWDVATGETYQRFVGH-KSDVMSVDIDKKA----SMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVP 158 (319)
T ss_dssp TTSEEEEEETTTTEEEEEEECC-SSCEEEEEECTTS----CEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECC
T ss_pred CCCEEEEEECCCCCeeEEEccC-CCcEEEEEEcCCC----CEEEEEeCCCeEEEEECCCC-eEEEEeccCCcEEEEEEcc
Confidence 9999999999999999999998 7889999999998 8888887 8999999764 55666788888855544
Q ss_pred -c------ceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCC
Q 001202 402 -G------KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (1124)
Q Consensus 402 -~------k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG 474 (1124)
. ..+++++.|+++++|++..... ...+.+|..+|.+++|+|+|++||+|+.||
T Consensus 159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------------~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg 218 (319)
T 3frx_A 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQI--------------------EADFIGHNSNINTLTASPDGTLIASAGKDG 218 (319)
T ss_dssp C------CCEEEEEETTSCEEEEETTTTEE--------------------EEEECCCCSCEEEEEECTTSSEEEEEETTC
T ss_pred CCCCCCCccEEEEEeCCCEEEEEECCcchh--------------------heeecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 1 2689999999999999754332 456778999999999999999999999999
Q ss_pred eE-EEEcCCCcEEE-ecCcCceeeeEEEEEEecCCE-EEEEEEecCCCeEEEEEeeCCCCCCcceEEEee---------c
Q 001202 475 LI-LYDIRQKKWRV-FGDITQEQKIQSKGLLWLGKI-IVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKS---------L 542 (1124)
Q Consensus 475 ~v-lwd~~sg~wk~-f~~~~~e~~~~v~gl~W~~~~-liv~~~~~~~~~~elrly~~~~ld~~~~l~~~~---------l 542 (1124)
.+ +||+.+++-.. +.. + -.+..++|.++. .++++. +. .+++|+.+ ......... .
T Consensus 219 ~i~iwd~~~~~~~~~~~~--~---~~v~~~~~sp~~~~la~~~---~~--~i~v~~~~---~~~~~~~~~~~~~~~~~~~ 285 (319)
T 3frx_A 219 EIMLWNLAAKKAMYTLSA--Q---DEVFSLAFSPNRYWLAAAT---AT--GIKVFSLD---PQYLVDDLRPEFAGYSKAA 285 (319)
T ss_dssp EEEEEETTTTEEEEEEEC--C---SCEEEEEECSSSSEEEEEE---TT--EEEEEEET---TEEEEEEECCCCTTCCGGG
T ss_pred eEEEEECCCCcEEEEecC--C---CcEEEEEEcCCCCEEEEEc---CC--CcEEEEeC---cCeeeeccCccccccccCc
Confidence 99 99999876322 211 1 136678887542 333322 12 47888663 111111110 1
Q ss_pred CCc--cEEEEeeCCEEEEEEcCCeEEEEEEE
Q 001202 543 LAK--PIVMDVYEDYILVTYRPFDVHIFHVK 571 (1124)
Q Consensus 543 ~s~--~l~l~~~~~~llv~~~d~~i~l~~~~ 571 (1124)
... .+..++.+.+++.++.|+.|++|++.
T Consensus 286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 111 25567888899999999999999986
No 42
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.95 E-value=7.6e-26 Score=261.19 Aligned_cols=276 Identities=14% Similarity=0.130 Sum_probs=216.9
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCe
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGV 279 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~Dgt 279 (1124)
+.+|...|.++.|+ |||+.+++++.|+++++||..+++.. ..|...+ +++|+|++.++|+|+.|++
T Consensus 60 l~gH~~~V~~~~~s----------~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~ 129 (354)
T 2pbi_B 60 LKGHGNKVLCMDWC----------KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNK 129 (354)
T ss_dssp EECCSSCEEEEEEC----------TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSE
T ss_pred ecCCCCeEEEEEEC----------CCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCC
Confidence 45677777665555 89999999999999999998766543 5678888 9999999999999999999
Q ss_pred EEEEEcCCCC-----ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCcee
Q 001202 280 VELYDLAESA-----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSIS 354 (1124)
Q Consensus 280 V~vwd~~~~~-----~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~ 354 (1124)
+++|++.... .....+. + |++.|.+++|+|++..|++|+.|++|++||+.+++++.++.+| ...|.
T Consensus 130 i~v~~~~~~~~~~~~~~~~~~~----~----h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h-~~~v~ 200 (354)
T 2pbi_B 130 CSVYPLTFDKNENMAAKKKSVA----M----HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGH-GADVL 200 (354)
T ss_dssp EEEEECCCCTTCCSGGGCEEEE----E----CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEE
T ss_pred EEEEEEeccccccccccceeee----c----cCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC-CCCeE
Confidence 9999986421 2334444 4 9999999999999999999999999999999999999999998 67899
Q ss_pred eeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEE--Eec-cceEEeeccCCceeeeEeeecCCeEEE
Q 001202 355 SPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLV 428 (1124)
Q Consensus 355 s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~--~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l 428 (1124)
+++++|+. ....+++|+ ++++|+..++++.....+|...|.. +++ ++.+++++.|+++++|++..+.. +..
T Consensus 201 ~~~~~~~~--~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~-~~~ 277 (354)
T 2pbi_B 201 CLDLAPSE--TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE-VAI 277 (354)
T ss_dssp EEEECCCS--SCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEE
T ss_pred EEEEEeCC--CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-EEE
Confidence 99998853 116788877 8999999999999998999998854 444 78999999999999999765432 110
Q ss_pred eecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEE-EecCcCceeeeEEEEEEecC
Q 001202 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWLG 506 (1124)
Q Consensus 429 ~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk-~f~~~~~e~~~~v~gl~W~~ 506 (1124)
+ ....+...+.+++|+|+|+++++|+.||.+ +||+.+++-. .+. .|+ -.|..+.|.+
T Consensus 278 ~-----------------~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~--~h~--~~v~~l~~sp 336 (354)
T 2pbi_B 278 Y-----------------SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF--GHE--NRVSTLRVSP 336 (354)
T ss_dssp E-----------------CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC--CCS--SCEEEEEECT
T ss_pred E-----------------cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE--CCC--CcEEEEEECC
Confidence 0 111234578999999999999999999999 9999877532 221 222 2467778864
Q ss_pred --CEEEEEEEecCCCeEEEEEee
Q 001202 507 --KIIVVCNYIDSSNTYELLFYP 527 (1124)
Q Consensus 507 --~~liv~~~~~~~~~~elrly~ 527 (1124)
.++++|+. +..+++|+
T Consensus 337 dg~~l~sgs~-----D~~v~vW~ 354 (354)
T 2pbi_B 337 DGTAFCSGSW-----DHTLRVWA 354 (354)
T ss_dssp TSSCEEEEET-----TSEEEEEC
T ss_pred CCCEEEEEcC-----CCCEEecC
Confidence 46777643 23788884
No 43
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.95 E-value=2.5e-25 Score=264.37 Aligned_cols=303 Identities=16% Similarity=0.166 Sum_probs=240.5
Q ss_pred EEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCc
Q 001202 74 VWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGS 153 (1124)
Q Consensus 74 ~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~ 153 (1124)
++++||+.|++++.||.|++||+..+... ..+.++...|.++..+++.+++|+.||.
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~-----------------------~~~~~h~~~v~~~~~~~~~l~s~~~dg~ 180 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCL-----------------------RTLVGHTGGVWSSQMRDNIIISGSTDRT 180 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEE-----------------------EECCCCSSCEEEEEEETTEEEEEETTSC
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEE-----------------------EEEcCCCCCEEEEEecCCEEEEEeCCCe
Confidence 58889999999999999999998754321 1123455678888888899999999999
Q ss_pred EEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEE
Q 001202 154 LYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLM 233 (1124)
Q Consensus 154 v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~ 233 (1124)
|++|+++.. .... ....+...|.++.++ ++.+
T Consensus 181 i~vwd~~~~--~~~~----------------------------------~~~~h~~~v~~~~~~------------~~~l 212 (445)
T 2ovr_B 181 LKVWNAETG--ECIH----------------------------------TLYGHTSTVRCMHLH------------EKRV 212 (445)
T ss_dssp EEEEETTTT--EEEE----------------------------------EECCCSSCEEEEEEE------------TTEE
T ss_pred EEEEECCcC--cEEE----------------------------------EECCCCCcEEEEEec------------CCEE
Confidence 998655432 1110 123455667665553 5678
Q ss_pred EEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCC
Q 001202 234 SCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP 309 (1124)
Q Consensus 234 ~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~ 309 (1124)
++++.|+++++||..+++.. .+|...+ ++++ ++.++++|+.||+|++||+.+ ++.+.++. + |.++
T Consensus 213 ~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~----~----~~~~ 281 (445)
T 2ovr_B 213 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET-ETCLHTLQ----G----HTNR 281 (445)
T ss_dssp EEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG-TEEEEEEC----C----CSSC
T ss_pred EEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC-CcEeEEec----C----CCCc
Confidence 88999999999998876543 6899999 9888 788999999999999999987 77777776 5 9999
Q ss_pred eEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEE
Q 001202 310 VSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLY 386 (1124)
Q Consensus 310 V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~ 386 (1124)
|.+++| ||..+++|+.||.|++||+.+++++.++.+| ...+.++.++ + +.+++|+ .+.+|+..+++..
T Consensus 282 v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~--~----~~l~~~~~dg~i~vwd~~~~~~~ 352 (445)
T 2ovr_B 282 VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTSGMELK--D----NILVSGNADSTVKIWDIKTGQCL 352 (445)
T ss_dssp EEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC-CSCEEEEEEE--T----TEEEEEETTSCEEEEETTTCCEE
T ss_pred eEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC-cccEEEEEEe--C----CEEEEEeCCCeEEEEECCCCcEE
Confidence 999999 8999999999999999999999999999888 6677777664 3 5677766 8999999999888
Q ss_pred EEecC---CcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEcc
Q 001202 387 AIEEG---SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK 462 (1124)
Q Consensus 387 ~~~~~---~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~Sp 462 (1124)
....+ |...|..+.+ ++.+++++.|+++++|++..+...-.+. .....+|..+|.+++|+|
T Consensus 353 ~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~s~ 417 (445)
T 2ovr_B 353 QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV---------------TLESGGSGGVVWRIRASN 417 (445)
T ss_dssp EEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE---------------ECTTGGGTCEEEEEEECS
T ss_pred EEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeee---------------ccccCCCCceEEEEEecC
Confidence 88765 7778888888 7889999999999999987655410000 001136788999999999
Q ss_pred CCCEEEEEcCCCe----E-EEEcCC
Q 001202 463 DGMFLAVAGLHGL----I-LYDIRQ 482 (1124)
Q Consensus 463 dG~~lAvag~dG~----v-lwd~~s 482 (1124)
+|.++|+|+.||+ + +||+..
T Consensus 418 ~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 418 TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CEEEEEEcccCCCCccEEEEEECCC
Confidence 9999999999997 7 999864
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.95 E-value=3.3e-25 Score=250.73 Aligned_cols=312 Identities=13% Similarity=0.089 Sum_probs=231.7
Q ss_pred ceEEEEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecC
Q 001202 22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (1124)
Q Consensus 22 ~~iv~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~ 100 (1124)
...++|||||+++|++. ++.+.+|.......++.. ..+.+.+.+++|+||+++|++++ +|.|++|++..+.
T Consensus 12 v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT-------LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp CCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEE-------ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred eeEEEECCCCCEEEeecCCCcEeccccCCcccccee-------ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence 34588999999998765 455667765322222211 12456788999999999999998 9999999997543
Q ss_pred ceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEE--eecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccc
Q 001202 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (1124)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~ 178 (1124)
.... +. ......+...+.++ .++++.+++++.||.+++|+.+.......
T Consensus 84 ~~~~----------~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----------- 134 (337)
T 1gxr_A 84 NKSP----------VS--------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK----------- 134 (337)
T ss_dssp CCSC----------SE--------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE-----------
T ss_pred ceee----------ee--------cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee-----------
Confidence 2100 00 00111233345544 45667899999999998865443211010
Q ss_pred cccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cC
Q 001202 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LG 255 (1124)
Q Consensus 179 i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~g 255 (1124)
.....+...|.++.++ ++|+.+++++.++.+++||..+++.. .+
T Consensus 135 -----------------------~~~~~~~~~i~~~~~~----------~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~ 181 (337)
T 1gxr_A 135 -----------------------AELTSSAPACYALAIS----------PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG 181 (337)
T ss_dssp -----------------------EEEECSSSCEEEEEEC----------TTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred -----------------------eecccCCCceEEEEEC----------CCCCEEEEEeCCCcEEEEeCCCCceeeeeec
Confidence 0122445566665554 78899999999999999998776543 67
Q ss_pred CCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEE
Q 001202 256 SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (1124)
Q Consensus 256 h~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vW 334 (1124)
|.+.+ +++|+|+++++++|+.||.|++||+.+ ++....+. |.++|.+++|+|||..+++|+.|+.|++|
T Consensus 182 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~~~~i~~~ 251 (337)
T 1gxr_A 182 HTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE-GRQLQQHD---------FTSQIFSLGYCPTGEWLAVGMESSNVEVL 251 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEE---------CSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ccCceEEEEECCCCCEEEEEecCCcEEEEECCC-CceEeeec---------CCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence 88888 999999999999999999999999988 66666665 78889999999999999999999999999
Q ss_pred EcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEE--EEec-cceEEee
Q 001202 335 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNR 408 (1124)
Q Consensus 335 dv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~--~~s~-~k~~~s~ 408 (1124)
|+.++... .+..| ...|.+++|+|++ +.+++++ .+.+|+..+++..... .|...+. .+++ ++.++++
T Consensus 252 ~~~~~~~~-~~~~~-~~~v~~~~~~~~~----~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~ 324 (337)
T 1gxr_A 252 HVNKPDKY-QLHLH-ESCVLSLKFAYCG----KWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTG 324 (337)
T ss_dssp ETTSSCEE-EECCC-SSCEEEEEECTTS----SEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEE
T ss_pred ECCCCCeE-EEcCC-ccceeEEEECCCC----CEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEe
Confidence 99988754 56666 6789999999998 7788776 8999999988877543 3566674 4455 7889999
Q ss_pred ccCCceeeeEee
Q 001202 409 GVSGMTYARQVI 420 (1124)
Q Consensus 409 s~d~~v~~w~l~ 420 (1124)
+.|+.+++|++.
T Consensus 325 ~~dg~i~iw~~~ 336 (337)
T 1gxr_A 325 SGDKKATVYEVI 336 (337)
T ss_dssp ETTSCEEEEEEE
T ss_pred cCCCeEEEEEEe
Confidence 999999999975
No 45
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.95 E-value=3.3e-25 Score=251.58 Aligned_cols=301 Identities=15% Similarity=0.204 Sum_probs=203.0
Q ss_pred ccccCCceeecCCCCCCCCCceE--EEEeeC-CeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEec
Q 001202 2 YMAYGWPQVIPLEQGLCPSSQQI--IYFKVN-NGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP 77 (1124)
Q Consensus 2 ~~~~g~P~~l~~~~~~~~~~~~i--v~fS~d-g~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSP 77 (1124)
||..-.++.+.+...+.++...| |+|+|+ +++||+++ |++|+||+..+.....+...+... .+.+.+.+++|+|
T Consensus 19 ~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~--~h~~~V~~~~~s~ 96 (340)
T 4aow_A 19 YFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVSDVVISS 96 (340)
T ss_dssp -------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC--CCSSCEEEEEECT
T ss_pred EEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe--CCCCCEEEEEECC
Confidence 44455566554433334566666 889998 67999876 568999998632221111122111 1346788999999
Q ss_pred CCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEE
Q 001202 78 DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSI 157 (1124)
Q Consensus 78 Dg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~ 157 (1124)
||++|++++.||.+++|+........... .........++.+++..+++++.||.+.+
T Consensus 97 dg~~l~s~~~d~~i~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~- 154 (340)
T 4aow_A 97 DGQFALSGSWDGTLRLWDLTTGTTTRRFV---------------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKL- 154 (340)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEE---------------------CCSSCEEEEEECTTSSCEEEEETTSCEEE-
T ss_pred CCCEEEEEcccccceEEeecccceeeeec---------------------CCCCceeEEEEeecCccceeecCCCeEEE-
Confidence 99999999999999999986532211110 01111223345566788999999999987
Q ss_pred eccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEe
Q 001202 158 SWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV 237 (1124)
Q Consensus 158 ~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~ 237 (1124)
|+........ .....+...+..+.+++. +.+.++++++
T Consensus 155 -~d~~~~~~~~---------------------------------~~~~~~~~~v~~~~~~~~--------~~~~~~~s~~ 192 (340)
T 4aow_A 155 -WNTLGVCKYT---------------------------------VQDESHSEWVSCVRFSPN--------SSNPIIVSCG 192 (340)
T ss_dssp -ECTTSCEEEE---------------------------------ECSSSCSSCEEEEEECSC--------SSSCEEEEEE
T ss_pred -EEeCCCceEE---------------------------------EEeccccCcccceEEccC--------CCCcEEEEEc
Confidence 5533221110 012345566766666643 3346677888
Q ss_pred cCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEE
Q 001202 238 SKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI 313 (1124)
Q Consensus 238 ~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~l 313 (1124)
.|+++++|+..+++.. .+|.+.| +++|+|++++||+|+.||+|++||+.+ ...+..+. +...|.++
T Consensus 193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~---------~~~~v~~~ 262 (340)
T 4aow_A 193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE-GKHLYTLD---------GGDIINAL 262 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEE---------CSSCEEEE
T ss_pred CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc-Cceeeeec---------CCceEEee
Confidence 9999999998876543 6899999 999999999999999999999999988 77777766 56789999
Q ss_pred EECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccC--------CcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCC
Q 001202 314 AWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI--------SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 382 (1124)
Q Consensus 314 awSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h--------~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~ 382 (1124)
+|+|++..++ ++.|+.|++||+.++.++.++..+ +...|++++|+|++ +.+++|+ ++++|+..+
T Consensus 263 ~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg----~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 263 CFSPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG----QTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp EECSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS----SEEEEEETTSCEEEEEEEC
T ss_pred ecCCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC----CEEEEEeCCCEEEEEeCCC
Confidence 9999987654 556899999999998887776532 24567777777776 5555554 555555544
Q ss_pred C
Q 001202 383 Y 383 (1124)
Q Consensus 383 ~ 383 (1124)
|
T Consensus 338 G 338 (340)
T 4aow_A 338 G 338 (340)
T ss_dssp -
T ss_pred c
Confidence 3
No 46
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.4e-27 Score=276.98 Aligned_cols=372 Identities=12% Similarity=0.106 Sum_probs=242.1
Q ss_pred eEEEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEec-CCcEEEEEeCCCeEEEEEeeecCc
Q 001202 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQITEK 101 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSP-Dg~~Lav~t~dg~l~i~~v~~~~~ 101 (1124)
....|+|+++.++++. .|+.. +..+..+... +.+.+.+++|+| |+++||+++.||.|++|++.....
T Consensus 31 ~~~~f~~~~~~~~~~~-----~w~~~--g~~~~~~~~~-----h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~ 98 (437)
T 3gre_A 31 DYKEFGPIQEIVRSPN-----MGNLR--GKLIATLMEN-----EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV 98 (437)
T ss_dssp GCGGGCCCCCCCCCCC-----GGGCC--CCEEEEECTT-----TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT
T ss_pred chhhcCCccccccccc-----ccccc--ceEEeeeccC-----CCCceEEEEECCCCCCEEEEecCCceEEEeECccccc
Confidence 3345899998887665 48763 3444443111 347899999999 999999999999999999875221
Q ss_pred eeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEe--ecCCeEEEEecCCcEEEEeccCccccceeeccCCCCcccc
Q 001202 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (1124)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i 179 (1124)
.... . ... .+ .+...|.+++ ++++.+++++.||.|++|+.+....+..... .....+
T Consensus 99 ~~~~---~------~~~--------~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~~i 157 (437)
T 3gre_A 99 GEVY---S------SSL--------TY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKF---LNCECI 157 (437)
T ss_dssp TCCC---S------CSE--------EE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEE---EEEEEE
T ss_pred Cccc---c------eee--------ec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeec---ccccee
Confidence 1000 0 000 00 1234566555 4567899999999999865532111111000 000011
Q ss_pred ccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cC-
Q 001202 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LG- 255 (1124)
Q Consensus 180 ~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~g- 255 (1124)
+.+.+.++ .+...+.++.+ .+++||+.+++++.|+++++||..+++.. .+
T Consensus 158 ~~~~~~~~------------------~~~~~~~~~~~--------~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 211 (437)
T 3gre_A 158 RKINLKNF------------------GKNEYAVRMRA--------FVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS 211 (437)
T ss_dssp EEEEGGGG------------------SSCCCEEEEEE--------EECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEEccCc------------------ccccCceEEEE--------EEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC
Confidence 11111000 02223333322 24589999999999999999999877653 45
Q ss_pred -CCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEEC----CCCCEEEEEECCC
Q 001202 256 -SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT----PDNSAFAVGWKSR 329 (1124)
Q Consensus 256 -h~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawS----PDG~~Lasgs~Dg 329 (1124)
|.+.+ +++|+|++++||+|+.||+|++||+.. +..+.++.. + |.++|.+++|+ |||.+|++|+.||
T Consensus 212 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~---~----~~~~v~~~~~~~~~s~~~~~l~s~~~dg 283 (437)
T 3gre_A 212 PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSF---G----DHAPITHVEVCQFYGKNSVIVVGGSSKT 283 (437)
T ss_dssp GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBC---T----TCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEec---C----CCCceEEEEeccccCCCccEEEEEcCCC
Confidence 78888 999999999999999999999999988 777776642 2 77899999665 5688999999999
Q ss_pred cEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceE--EEEeccceEEe
Q 001202 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERV--LIFSFGKCCLN 407 (1124)
Q Consensus 330 ~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v--~~~s~~k~~~s 407 (1124)
.|++||+.++++..++.+| ...+..+.|+|++ ..+... + .....|...| ++++.++.+++
T Consensus 284 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~l~~~-~------------~~~~~~~~~v~~l~~~~~~~l~s 345 (437)
T 3gre_A 284 FLTIWNFVKGHCQYAFINS-DEQPSMEHFLPIE----KGLEEL-N------------FCGIRSLNALSTISVSNDKILLT 345 (437)
T ss_dssp EEEEEETTTTEEEEEEESS-SSCCCGGGGSCBC----SSGGGC-C------------CCCCCSGGGGCCEEEETTEEEEE
T ss_pred cEEEEEcCCCcEEEEEEcC-CCCCccceecccc----cccccc-e------------ecccccCCceEEEEECCceEEEe
Confidence 9999999999999999988 6778888888876 222100 0 0001255555 34444678899
Q ss_pred eccCCceeeeEeeecCCeEEEeecC-CCccc---e-----------eee--cccceeeccCCCceEEEEEccC--CCEEE
Q 001202 408 RGVSGMTYARQVIYGEDRLLVVQSE-DTDEL---K-----------ILH--LNLPVSYISQNWPVQHVAASKD--GMFLA 468 (1124)
Q Consensus 408 ~s~d~~v~~w~l~~~~~~l~l~~~~-~~~~~---~-----------w~~--~~~p~~~~~~~~~I~~va~Spd--G~~lA 468 (1124)
++.|+.+++|++..+.....+.... ..... . |.. .........|...|.+++++++ +.+|+
T Consensus 346 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~ 425 (437)
T 3gre_A 346 DEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLV 425 (437)
T ss_dssp EGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEE
T ss_pred cCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEE
Confidence 9999999999987765432222211 10000 0 000 0001123358999999999998 88999
Q ss_pred EEcCCCeE-EEE
Q 001202 469 VAGLHGLI-LYD 479 (1124)
Q Consensus 469 vag~dG~v-lwd 479 (1124)
+|+.||.| +|+
T Consensus 426 s~~~dG~I~iw~ 437 (437)
T 3gre_A 426 ACDNSGLIGIFQ 437 (437)
T ss_dssp EEETTSCEEEEC
T ss_pred EEcCCceEEEeC
Confidence 99999999 994
No 47
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.9e-26 Score=279.73 Aligned_cols=260 Identities=8% Similarity=-0.028 Sum_probs=192.1
Q ss_pred CCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccc--------------eecCCCCeE-EEEEccCCCE
Q 001202 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--------------KELGSGDAV-CASIAPEQQI 270 (1124)
Q Consensus 206 ~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~--------------~~~gh~~~v-~va~spdg~l 270 (1124)
.+...|.++.|+|... ..++|.++++++.|+++++|+...++ .+.+|...+ |++|+|++ .
T Consensus 205 ~~~~~V~~v~wsp~~~----~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~ 279 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCH----APHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T 279 (524)
T ss_dssp ECCCSEEEEEECSSCC----CSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred ecCCcEEEEEECCCCC----CCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence 3456788888887531 22467899999999999999986542 235788999 99999864 8
Q ss_pred EEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEE--EECCCC-CEEEEEECCCcEEEEEcCCCeeeEEecc
Q 001202 271 LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI--AWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 271 LAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~l--awSPDG-~~Lasgs~Dg~I~vWdv~~~~l~~tl~~ 347 (1124)
||+|+.||+|++||+.+.......+. + |+++|.+| +|+|+| ++||||+.|++|+|||+.++++..++.+
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~----~----H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~ 351 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQ----V----HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS 351 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEE----C----SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEE
T ss_pred EEEEeCCCEEEEEECCCCCCceEEee----c----ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccc
Confidence 99999999999999986334445555 5 99999999 679998 8999999999999999998877777776
Q ss_pred CCc-CceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEee
Q 001202 348 ISL-SSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVI 420 (1124)
Q Consensus 348 h~~-~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~ 420 (1124)
|.. ..|.+++|+|++ +.+++++ ++++|+..++.+.....+|...|..+.+ ++.+++|+.|+++++|+..
T Consensus 352 ~~~~~~v~~v~fsp~~----~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 352 RFRGSNLVPVVYCPQI----YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp ECSCCSCCCEEEETTT----TEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred ccccCcccceEeCCCc----CeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 632 258899999988 6777765 8999999988877777789999965555 7889999999999999854
Q ss_pred ecCCe-----------EEEeec--CCCcc--ce--------ee-ecccceeeccCCCceEEEEEccCCC---EEEEEcCC
Q 001202 421 YGEDR-----------LLVVQS--EDTDE--LK--------IL-HLNLPVSYISQNWPVQHVAASKDGM---FLAVAGLH 473 (1124)
Q Consensus 421 ~~~~~-----------l~l~~~--~~~~~--~~--------w~-~~~~p~~~~~~~~~I~~va~SpdG~---~lAvag~d 473 (1124)
..--. ..++.- ..... .. |. ..+++..+.+|..+|.+++|||+|. .+|+|+.+
T Consensus 428 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~ 507 (524)
T 2j04_B 428 RRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSA 507 (524)
T ss_dssp SSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTT
T ss_pred HhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccC
Confidence 22100 011111 10000 01 11 1234556778999999999999964 99999999
Q ss_pred CeE-EEEcCC
Q 001202 474 GLI-LYDIRQ 482 (1124)
Q Consensus 474 G~v-lwd~~s 482 (1124)
|++ +|++..
T Consensus 508 g~vrlw~l~~ 517 (524)
T 2j04_B 508 GLLTLEYLSL 517 (524)
T ss_dssp SEEEEEECSC
T ss_pred ceEEEEEccc
Confidence 999 999754
No 48
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=3.5e-25 Score=279.03 Aligned_cols=297 Identities=19% Similarity=0.216 Sum_probs=217.6
Q ss_pred hhcceeEEEEecCC-cEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEE--eecC
Q 001202 66 REGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDN 142 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg-~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~d~ 142 (1124)
|.+.+.+++|+||+ ..|++++.||.|++|++....... +. ....+.++...|.++ .+++
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~--------~~----------~~~~~~~h~~~v~~v~~s~~g 442 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY--------GV----------AQRRLTGHSHFVEDVVLSSDG 442 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS--------CE----------EEEEEECCSSCEEEEEECTTS
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc--------cc----------ccceecCCCCcEEEEEECCCC
Confidence 45778899999975 789999999999999987543210 00 001223445556554 4677
Q ss_pred CeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcce
Q 001202 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (1124)
Q Consensus 143 ~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~ 222 (1124)
..+++|+.||.|++|+.. ..... ..+..|...|.++.|+
T Consensus 443 ~~l~sgs~Dg~v~vwd~~--~~~~~----------------------------------~~~~~h~~~v~~~~~s----- 481 (694)
T 3dm0_A 443 QFALSGSWDGELRLWDLA--AGVST----------------------------------RRFVGHTKDVLSVAFS----- 481 (694)
T ss_dssp SEEEEEETTSEEEEEETT--TTEEE----------------------------------EEEECCSSCEEEEEEC-----
T ss_pred CEEEEEeCCCcEEEEECC--CCcce----------------------------------eEEeCCCCCEEEEEEe-----
Confidence 889999999999985443 22111 0133566777766655
Q ss_pred EEEEecCCcEEEEEecCCceEeeecccccee------cCCCCeE-EEEEccCC--CEEEEEecCCeEEEEEcCCCCceeE
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAV-CASIAPEQ--QILAVGTRRGVVELYDLAESASLIR 293 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~------~gh~~~v-~va~spdg--~lLAsGs~DgtV~vwd~~~~~~~~~ 293 (1124)
+||+.+++++.|+++++||....... .+|.+.| |++|+|++ ..+++|+.||+|++||+.+ .+...
T Consensus 482 -----~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~-~~~~~ 555 (694)
T 3dm0_A 482 -----LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN-CKLRS 555 (694)
T ss_dssp -----TTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-CCEEE
T ss_pred -----CCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC-CcEEE
Confidence 78999999999999999997543221 4788889 99999986 6899999999999999987 77777
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee
Q 001202 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1124)
Q Consensus 294 ~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~ 373 (1124)
++. + |.+.|++++|+|||++|++|+.||+|++||+.+++.+.++..+ ..+.+++|+|++ ..++++.
T Consensus 556 ~~~----~----h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~----~~l~~~~ 621 (694)
T 3dm0_A 556 TLA----G----HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN--SVIHALCFSPNR----YWLCAAT 621 (694)
T ss_dssp EEC----C----CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS--SCEEEEEECSSS----SEEEEEE
T ss_pred EEc----C----CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC--CcEEEEEEcCCC----cEEEEEc
Confidence 776 5 9999999999999999999999999999999999988887654 579999999987 6666655
Q ss_pred --eEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccC
Q 001202 374 --SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (1124)
Q Consensus 374 --~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~ 451 (1124)
.+++|+.++++++.....+...... .. + . . -+.....+
T Consensus 622 ~~~i~iwd~~~~~~~~~~~~~~~~~~~--------~~--~---------~--~-------------------~~~~~~~~ 661 (694)
T 3dm0_A 622 EHGIKIWDLESKSIVEDLKVDLKAEAE--------KA--D---------N--S-------------------GPAATKRK 661 (694)
T ss_dssp TTEEEEEETTTTEEEEEECCCCC--------------------------------------------------------C
T ss_pred CCCEEEEECCCCCChhhhccccccccc--------cc--c---------c--c-------------------ccccCCce
Confidence 8899999988877655432110000 00 0 0 0 01111122
Q ss_pred CCceEEEEEccCCCEEEEEcCCCeE-EEEcC
Q 001202 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (1124)
Q Consensus 452 ~~~I~~va~SpdG~~lAvag~dG~v-lwd~~ 481 (1124)
...+.+++|||||++|++||.||.+ +|++.
T Consensus 662 ~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 662 VIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 3357899999999999999999999 99974
No 49
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.9e-26 Score=269.93 Aligned_cols=236 Identities=14% Similarity=0.142 Sum_probs=174.2
Q ss_pred CceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccceecCCCC-----eE-EEEEccCCCEEEEEecCCeEE
Q 001202 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGD-----AV-CASIAPEQQILAVGTRRGVVE 281 (1124)
Q Consensus 208 ~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~-----~v-~va~spdg~lLAsGs~DgtV~ 281 (1124)
...|.+++|| |||+.+++++.++++++|+....-....|.. .+ +++|||||++||+|+.||+|+
T Consensus 85 ~~~V~~vawS----------PdG~~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 85 VCYPRVCKPS----------PIDDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SCCEEEEEEC----------SSSSCEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred CCcEEEEEEC----------CCCCEEEEEeCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 5567666665 8999999999999999998543211123554 48 999999999999999999999
Q ss_pred EEEcCCCCc-------eeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCee---eEEeccCCcC
Q 001202 282 LYDLAESAS-------LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL---MSTIRQISLS 351 (1124)
Q Consensus 282 vwd~~~~~~-------~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l---~~tl~~h~~~ 351 (1124)
+|++.+ +. .+.++.... .+|.+.|.+++||||| +++++.|++|++|++.++.. ..++..++..
T Consensus 155 IWd~~~-~~l~~~~~i~l~ti~~~~----~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~ 227 (588)
T 2j04_A 155 FFSIRK-NSENTPEFYFESSIRLSD----AGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR 227 (588)
T ss_dssp EEECCC-CTTTCCCCEEEEEEECSC----TTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred EEECCC-Cccccccceeeeeeeccc----ccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence 999987 54 256665222 2499999999999999 88999999999999998773 3567533368
Q ss_pred ceeeeEEcCCCCCCcceEEEee--eEEEEeCCCCeEEEEecCCcceE--EEE--ec-cceEEeeccCCceeeeEeeecCC
Q 001202 352 SISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERV--LIF--SF-GKCCLNRGVSGMTYARQVIYGED 424 (1124)
Q Consensus 352 ~V~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l~~~~~~~~~~v--~~~--s~-~k~~~s~s~d~~v~~w~l~~~~~ 424 (1124)
.|.+++|+ + ..+++++ ++++|+..++++.....+|...+ +.| ++ ++.+++++.||+ ++|...
T Consensus 228 ~V~svaFs--g----~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---- 296 (588)
T 2j04_A 228 KITDLKIV--D----YKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---- 296 (588)
T ss_dssp CCCCEEEE--T----TEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----
T ss_pred cEEEEEEE--C----CEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----
Confidence 89999998 4 5677655 89999999999865555788877 566 55 667888888999 999854
Q ss_pred eEEEeecCCC-------ccceeeecccceeeccCCCceEEEEEccCCCEEEEEcC
Q 001202 425 RLLVVQSEDT-------DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (1124)
Q Consensus 425 ~l~l~~~~~~-------~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~ 472 (1124)
.+- +..+.. ....|+..--+.....++..|.+++|||||+.+|++++
T Consensus 297 ~~~-~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ELH-VTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SEE-EECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred cEE-ECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence 122 222111 11246432111222334677999999999999999874
No 50
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.94 E-value=3.5e-25 Score=254.80 Aligned_cols=318 Identities=12% Similarity=0.085 Sum_probs=219.1
Q ss_pred hcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEE--eecCCe
Q 001202 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKH 144 (1124)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~d~~~ 144 (1124)
.+++.+++|+|||++||+++.+|.|++|++..+... ....+.++...|.++ .++++.
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~---------------------~~~~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV---------------------QVHELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE---------------------EEEEEECCSSCEEEEEEETTTTE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE---------------------eeeeecCCCCcccEEEEeCCCCE
Confidence 467889999999999999999999999999754200 001122233445554 456788
Q ss_pred EEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEE
Q 001202 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1124)
Q Consensus 145 llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~ 224 (1124)
+++++.||.+++|+.+....... .....+...|.++.|+
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~~----------------------------------~~~~~~~~~v~~~~~~------- 105 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKPT----------------------------------LVILRINRAARCVRWA------- 105 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEEE----------------------------------EECCCCSSCEEEEEEC-------
T ss_pred EEEEcCCCeEEEEECCCCeeeee----------------------------------EEeecCCCceeEEEEC-------
Confidence 99999999999865432211000 0123455667766665
Q ss_pred EEecCCcEEEEEecCCceEeeeccccce------e-cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCC---------
Q 001202 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK------E-LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE--------- 287 (1124)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~wd~~~~~~------~-~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~--------- 287 (1124)
++|+.+++++.++.+++|+....+. . .+|...+ +++|+|+++++++|+.||+|++||+..
T Consensus 106 ---~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 106 ---PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp ---TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred ---CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence 7888999999999999999876541 1 5688888 999999999999999999999999641
Q ss_pred --------CCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEc
Q 001202 288 --------SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (1124)
Q Consensus 288 --------~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~s 359 (1124)
.+..+..+. + |.++|.+++|+|||.+|++|+.||.|++||+.+++++.++..| ...|.+++|+
T Consensus 183 ~~~~~~~~~~~~~~~~~----~----~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~ 253 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESS----S----SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAVTFI 253 (372)
T ss_dssp BTTBSCCCTTCEEEECC----C----CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS-SCCEEEEEEE
T ss_pred cccccccchhhheEecC----C----CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC-CCCeEEEEEe
Confidence 144455544 3 8999999999999999999999999999999999999999887 6789999999
Q ss_pred CCCCCCcceEEEee--eEEEEeCCC--CeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCc
Q 001202 360 PNQDCKYEPLMSGT--SMMQWDEYG--YRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (1124)
Q Consensus 360 p~~~~~~~~l~sg~--~i~~W~~~~--~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~ 435 (1124)
|++ ..+++|. .+.+|+..+ +.......-. .. .. ........++.|.......+.. +.
T Consensus 254 ~~~----~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~-~~-------~~-~~~~~~~~~~~~~~~~~~~~~~---~~--- 314 (372)
T 1k8k_C 254 TES----SLVAAGHDCFPVLFTYDSAAGKLSFGGRLD-VP-------KQ-SSQRGLTARERFQNLDKKASSE---GS--- 314 (372)
T ss_dssp ETT----EEEEEETTSSCEEEEEETTTTEEEECCCCC-CC----------------CHHHHHHHCCCCC-----------
T ss_pred cCC----CEEEEEeCCeEEEEEccCcCceEEEeeccC-cc-------cc-chhhhcchhhhhhhcccccccc---cC---
Confidence 988 7777665 778888766 4322211100 00 00 0001112233331111000000 00
Q ss_pred cceeeecccceee-ccCCCceEEEEEc-cCC---CEEEEEcCCCeE-EEEcCCC
Q 001202 436 ELKILHLNLPVSY-ISQNWPVQHVAAS-KDG---MFLAVAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 436 ~~~w~~~~~p~~~-~~~~~~I~~va~S-pdG---~~lAvag~dG~v-lwd~~sg 483 (1124)
. .....+ .+|..+|.+++|+ ++| ++|++||.||.+ +|++.++
T Consensus 315 -----~-~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 315 -----A-AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp ----------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred -----c-cccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 0 000222 3899999999855 787 999999999999 9998764
No 51
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.94 E-value=1.1e-24 Score=249.78 Aligned_cols=283 Identities=12% Similarity=0.147 Sum_probs=211.0
Q ss_pred cCCCCceEEEEEecCCcceEEEEec-CCcEEEEEecCCceEeeeccccc----------eecCCCCeE-EEEEccCCCEE
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKID----------KELGSGDAV-CASIAPEQQIL 271 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~-dG~~~~~~~~d~~i~~wd~~~~~----------~~~gh~~~v-~va~spdg~lL 271 (1124)
+.+|...|.++.|.+... ++ ||+++++++.|+++++|+....+ .+.+|.+.| +++|+|++.++
T Consensus 17 l~gH~~~V~~~~~~~s~~-----~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQK-----ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EECCSSCEEEEEECCCSS-----TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eccchhhhhheeeEEEee-----cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 457788888877732110 24 89999999999999999976421 236899999 99999999999
Q ss_pred EEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEec--cCC
Q 001202 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR--QIS 349 (1124)
Q Consensus 272 AsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~--~h~ 349 (1124)
++|+.||+|++||+.+ ++.+.++. + |.++|.+++|+|||++|++|+.|++|++||+.+........ +|
T Consensus 92 ~s~s~D~~v~lwd~~~-~~~~~~~~----~----h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~- 161 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRT-GTTYKRFV----G----HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH- 161 (343)
T ss_dssp EEEETTSEEEEEETTS-SCEEEEEE----C----CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSC-
T ss_pred EEEcCCCcEEEEECCC-CcEEEEEc----C----CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCC-
Confidence 9999999999999998 77777777 5 99999999999999999999999999999998654333221 34
Q ss_pred cCceeeeEEcCCCCCC------cceEEEee---eEEEEeCCCCeEEEEecCCcceEEE--Eec-cceEEeeccCCceeee
Q 001202 350 LSSISSPIVKPNQDCK------YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYAR 417 (1124)
Q Consensus 350 ~~~V~s~~~sp~~~~~------~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~--~s~-~k~~~s~s~d~~v~~w 417 (1124)
...|.+++|+|++... ...+++|+ ++++|+. ..++.....+|...|.. +++ ++.+++++.|+++++|
T Consensus 162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240 (343)
T ss_dssp SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEE
Confidence 6789999999986311 14677766 9999994 55666777788888854 455 8899999999999999
Q ss_pred EeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEE---EecCcC-
Q 001202 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR---VFGDIT- 492 (1124)
Q Consensus 418 ~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk---~f~~~~- 492 (1124)
++..... +.....+..+|.+++|+|+|+++++|+ |+.+ +||+.+++-. .+....
T Consensus 241 d~~~~~~--------------------~~~~~~~~~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~~~ 299 (343)
T 2xzm_R 241 DILNLTY--------------------PQREFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPI 299 (343)
T ss_dssp ESSCCSS--------------------CSEEEECSSCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCCSG
T ss_pred ECCCCcc--------------------cceeecCCCcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecCcc
Confidence 9744332 222223456799999999999988665 5556 9999876421 121100
Q ss_pred ------ceeeeEEEEEEecC--CEEEEEEEecCCCeEEEEEeeC
Q 001202 493 ------QEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 493 ------~e~~~~v~gl~W~~--~~liv~~~~~~~~~~elrly~~ 528 (1124)
......+..++|.+ ..+++|+. + ..|++|+.
T Consensus 300 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~---D--g~v~~w~~ 338 (343)
T 2xzm_R 300 TKAEGQKGKNPQCTSLAWNALGKKLFAGFT---D--GVIRTFSF 338 (343)
T ss_dssp GGBTTBCCSCCCEEEEEECSSSCCEEEEET---T--SEEEEEEE
T ss_pred hhhhhhcCCCCceEEEEECCCCCeEEEecC---C--ceEEEEEE
Confidence 01122477889974 56666633 2 37899976
No 52
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.94 E-value=6.5e-26 Score=264.22 Aligned_cols=279 Identities=13% Similarity=0.179 Sum_probs=213.9
Q ss_pred ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcE
Q 001202 253 ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (1124)
Q Consensus 253 ~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I 331 (1124)
+.||.+.| +++|+|++++||+|+.||+|+|||+.+ +....++. + |...|.+++|+|||++||+|+.|+++
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~-~~~~~~~~----~----h~~~v~~~~~s~~g~~las~~~d~~v 132 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT-SQKTHAIK----L----HCPWVMECAFAPNGQSVACGGLDSAC 132 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT-TEEEEEEE----C----CCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CccceEEe----c----CCCCEEEEEECCCCCEEEEeeCCCcE
Confidence 47999999 999999999999999999999999988 77777777 5 89999999999999999999999999
Q ss_pred EEEEcCCCe-------eeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEe-----cCCcceE
Q 001202 332 TVWSVSGCR-------LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE-----EGSSERV 396 (1124)
Q Consensus 332 ~vWdv~~~~-------l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~-----~~~~~~v 396 (1124)
++|++.+.. ...++.+| ...|.++.|+|++. ..+++|+ ++++|+..+++..... .+|...+
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh-~~~v~~~~~~~~~~---~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v 208 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGH-KGYASSCQYVPDQE---TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV 208 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCC-SSCCCCCBCCSSSS---SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred EEEECCCCccccCCccceeeccCC-CcceEEEEEecCCC---CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence 999986532 34466777 77899999998752 4577776 9999999999887766 5677788
Q ss_pred EEEec----cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcC
Q 001202 397 LIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (1124)
Q Consensus 397 ~~~s~----~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~ 472 (1124)
..+.+ +..+++++.|+++++|++..... ....+.+|..+|.+++|+|+|++|++|+.
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 269 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDTTVRLWDLRITSR-------------------AVRTYHGHEGDINSVKFFPDGQRFGTGSD 269 (380)
T ss_dssp EEEEECSSSCCEEEEEETTSCEEEEETTTTCC-------------------CCEEECCCSSCCCEEEECTTSSEEEEECS
T ss_pred EEEEeecCCCCEEEEEECCCeEEEEECCCCCc-------------------ceEEECCcCCCeEEEEEecCCCeEEEEcC
Confidence 65554 56899999999999999864433 14567789999999999999999999999
Q ss_pred CCeE-EEEcCCCcEE-EecCcCc--eeee-EEEEEEec--CCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEe-----
Q 001202 473 HGLI-LYDIRQKKWR-VFGDITQ--EQKI-QSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK----- 540 (1124)
Q Consensus 473 dG~v-lwd~~sg~wk-~f~~~~~--e~~~-~v~gl~W~--~~~liv~~~~~~~~~~elrly~~~~ld~~~~l~~~----- 540 (1124)
||++ +||+.+++.. .+..... .... .+..++|. +.++++++ .+..+++|+... .......
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-----~dg~i~vwd~~~---~~~~~~~~~~~~ 341 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY-----SNGDCYVWDTLL---AEMVLNLGTLQN 341 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC-----TTSCEEEEETTT---CCEEEEECCSCS
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE-----CCCCEEEEECCC---CceEEEEecccC
Confidence 9999 9999988643 2322111 1111 24567775 45666652 234799998731 1111111
Q ss_pred ecCC--ccEEEEeeCCEEEEEEcCCeEEEEEEE
Q 001202 541 SLLA--KPIVMDVYEDYILVTYRPFDVHIFHVK 571 (1124)
Q Consensus 541 ~l~s--~~l~l~~~~~~llv~~~d~~i~l~~~~ 571 (1124)
.+.. ..+.+++.+..++.++.|+.|++|++.
T Consensus 342 ~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 342 SHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred CCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 1122 235567788888889999999999875
No 53
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.94 E-value=1.3e-24 Score=245.11 Aligned_cols=275 Identities=13% Similarity=0.190 Sum_probs=216.1
Q ss_pred ccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce---ecCCCCeE-EEEEccCCCEEEEEecCC
Q 001202 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRG 278 (1124)
Q Consensus 203 ~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~---~~gh~~~v-~va~spdg~lLAsGs~Dg 278 (1124)
.+.+|...|.++.|+ |||+++++++.|+.+++|+..+++. ..+|...+ +++|+|++++|++|+.||
T Consensus 18 ~~~gh~~~v~~~~~s----------~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 87 (312)
T 4ery_A 18 TLAGHTKAVSSVKFS----------PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 87 (312)
T ss_dssp EECCCSSCEEEEEEC----------TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEcccCCcEEEEEEC----------CCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCC
Confidence 345677788776665 8899999999999999999876643 36899999 999999999999999999
Q ss_pred eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEE
Q 001202 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (1124)
Q Consensus 279 tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~ 358 (1124)
+|++||+.+ ++.+..+. + |.+.|.+++|+|+|..|++|+.||+|++||+.+++.+.++..| ...|.+++|
T Consensus 88 ~i~vwd~~~-~~~~~~~~----~----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~ 157 (312)
T 4ery_A 88 TLKIWDVSS-GKCLKTLK----G----HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHF 157 (312)
T ss_dssp EEEEEETTT-CCEEEEEE----C----CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEE
T ss_pred EEEEEECCC-CcEEEEEc----C----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCC-CCcEEEEEE
Confidence 999999988 77777777 5 9999999999999999999999999999999999999999887 678999999
Q ss_pred cCCCCCCcceEEEee---eEEEEeCCCCeEEEEec-CCcceE--EEEec-cceEEeeccCCceeeeEeeecCCeEEEeec
Q 001202 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE-GSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQS 431 (1124)
Q Consensus 359 sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~-~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~ 431 (1124)
+|++ ..+++|+ .+++|+..+++...... .+...+ ..+++ ++.+++++.|+.+++|++..+..
T Consensus 158 ~~~~----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------- 226 (312)
T 4ery_A 158 NRDG----SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC------- 226 (312)
T ss_dssp CTTS----SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-------
T ss_pred cCCC----CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-------
Confidence 9998 7888876 89999999888776553 334445 55666 88899999999999999765433
Q ss_pred CCCccceeeecccceeeccCCCc---eEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEE-EecCcCceeeeEEEEEEecC
Q 001202 432 EDTDELKILHLNLPVSYISQNWP---VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWLG 506 (1124)
Q Consensus 432 ~~~~~~~w~~~~~p~~~~~~~~~---I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk-~f~~~~~e~~~~v~gl~W~~ 506 (1124)
...+.+|... +......++|+++++|+.||.+ +||+.+++-. .+. .+. -.+..+.|.+
T Consensus 227 -------------~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~--~~v~~~~~~p 289 (312)
T 4ery_A 227 -------------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ--GHT--DVVISTACHP 289 (312)
T ss_dssp -------------EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC--CCS--SCEEEEEECS
T ss_pred -------------EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh--ccC--CcEEEEeecC
Confidence 2334444433 2233345789999999999999 9999987632 222 122 2466778864
Q ss_pred --CEEEEEEEecCCCeEEEEEeeC
Q 001202 507 --KIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 507 --~~liv~~~~~~~~~~elrly~~ 528 (1124)
..+++++. +.+..+++|..
T Consensus 290 ~~~~l~s~~~---~~d~~i~~W~~ 310 (312)
T 4ery_A 290 TENIIASAAL---ENDKTIKLWKS 310 (312)
T ss_dssp SSSEEEEEEC---TTTCCEEEEEC
T ss_pred cCCceEEEEc---cCCccEEEecC
Confidence 45555533 23447899975
No 54
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.94 E-value=4.4e-24 Score=254.69 Aligned_cols=318 Identities=13% Similarity=0.133 Sum_probs=242.5
Q ss_pred ccccce-EEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCC
Q 001202 129 AEKGLS-VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (1124)
Q Consensus 129 ~~~~~~-v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~ 207 (1124)
.++... ++|+..+++.+++|+.||.|++|+. ...... ..+.+|
T Consensus 118 ~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~--~~~~~~----------------------------------~~~~~h 161 (464)
T 3v7d_B 118 RGHMTSVITCLQFEDNYVITGADDKMIRVYDS--INKKFL----------------------------------LQLSGH 161 (464)
T ss_dssp ECCSSSCEEEEEEETTEEEEEETTSCEEEEET--TTTEEE----------------------------------EEECCC
T ss_pred cCCCCCcEEEEEECCCEEEEEcCCCcEEEEEC--CCCcEE----------------------------------EEEeCC
Confidence 344333 6788999999999999999998543 322111 023467
Q ss_pred CceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEc--cCCCEEEEEecCCeEE
Q 001202 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIA--PEQQILAVGTRRGVVE 281 (1124)
Q Consensus 208 ~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~s--pdg~lLAsGs~DgtV~ 281 (1124)
...|.++.|+ +++ .+++++.|+++++||..+++.. .+|.+.+ +++|+ +++.++++|+.||+|+
T Consensus 162 ~~~V~~l~~~----------~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~ 230 (464)
T 3v7d_B 162 DGGVWALKYA----------HGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230 (464)
T ss_dssp SSCEEEEEEC----------STT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEE
T ss_pred CcCEEEEEEc----------CCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEE
Confidence 7788777776 566 7888999999999999877643 6899999 99998 5789999999999999
Q ss_pred EEEcCCCCceeEEEeec----------c-----CCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEec
Q 001202 282 LYDLAESASLIRTVSLY----------D-----WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1124)
Q Consensus 282 vwd~~~~~~~~~~l~~~----------~-----~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~ 346 (1124)
+||+.+ .......... . .....+|.+.|.++ +|+|..+++|+.||.|++||+.+++++.++.
T Consensus 231 vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 307 (464)
T 3v7d_B 231 VWKLPK-ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 307 (464)
T ss_dssp EEECCC-CCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EeeCCC-CcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 999987 3221110000 0 00012388888887 6889999999999999999999999999999
Q ss_pred cCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec-cceEEeeccCCceeeeEeeec
Q 001202 347 QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYG 422 (1124)
Q Consensus 347 ~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~ 422 (1124)
+| ...|.+++|+|++ +.+++|+ ++++|+..++++.....+|...|..+.+ ++.+++++.|+++++|++..+
T Consensus 308 ~~-~~~v~~~~~~~~~----~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 308 GH-TDRIYSTIYDHER----KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp CC-SSCEEEEEEETTT----TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTC
T ss_pred CC-CCCEEEEEEcCCC----CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCC
Confidence 88 7889999999998 7888877 8999999999999999999999987777 788999999999999997654
Q ss_pred CCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEE
Q 001202 423 EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKG 501 (1124)
Q Consensus 423 ~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~g 501 (1124)
... . ...+...+..++|+|+|+++++|+ ||.+ +||+.+++...-....+ ...+..
T Consensus 383 ~~~--------------------~-~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~--~~~v~~ 438 (464)
T 3v7d_B 383 SRK--------------------F-SYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKD--ADQIWS 438 (464)
T ss_dssp CEE--------------------E-EEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTT--CSEEEE
T ss_pred cee--------------------e-eecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccC--CCcEEE
Confidence 431 1 113556778899999999999999 8999 99999987432111122 245778
Q ss_pred EEecCCEEEEEEEecCCCeEEEEEee
Q 001202 502 LLWLGKIIVVCNYIDSSNTYELLFYP 527 (1124)
Q Consensus 502 l~W~~~~liv~~~~~~~~~~elrly~ 527 (1124)
+.|.++.+++++.. ++..-+.+++
T Consensus 439 v~~~~~~l~~~~~~--~g~~~i~~ld 462 (464)
T 3v7d_B 439 VNFKGKTLVAAVEK--DGQSFLEILD 462 (464)
T ss_dssp EEEETTEEEEEEEE--TTEEEEEEEE
T ss_pred EEecCCEEEEEEEe--CCeEEEEEee
Confidence 89999988888664 3444455554
No 55
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.94 E-value=5.1e-25 Score=247.49 Aligned_cols=251 Identities=16% Similarity=0.099 Sum_probs=194.0
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccc--c---eecCCCCeE-EEEEccC--CCEEEEEe
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI--D---KELGSGDAV-CASIAPE--QQILAVGT 275 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~--~---~~~gh~~~v-~va~spd--g~lLAsGs 275 (1124)
..+|...|.++.|+ +||+++++++.|+++++|+.... + .+.+|.+.| +++|+|+ +++||+|+
T Consensus 5 ~~~h~~~V~~~~~s----------~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s 74 (297)
T 2pm7_B 5 ANAHNEMIHDAVMD----------YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS 74 (297)
T ss_dssp CCSCSSCEEEEEEC----------TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred ccCCcCceEEEEEC----------CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEc
Confidence 34667778766655 89999999999999999997532 1 237999999 9999864 89999999
Q ss_pred cCCeEEEEEcCCCCc--eeEEEeeccCCCCCCCCCCeEEEEECCC--CCEEEEEECCCcEEEEEcCCCe--eeEEeccCC
Q 001202 276 RRGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR--LMSTIRQIS 349 (1124)
Q Consensus 276 ~DgtV~vwd~~~~~~--~~~~l~~~~~g~~~~h~g~V~~lawSPD--G~~Lasgs~Dg~I~vWdv~~~~--l~~tl~~h~ 349 (1124)
.||+|++||+.+ +. .+..+. + |.++|.+++|+|+ |.+|++|+.|++|++||+.++. ....+.+|
T Consensus 75 ~D~~v~iWd~~~-~~~~~~~~~~----~----h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h- 144 (297)
T 2pm7_B 75 YDGKVMIWKEEN-GRWSQIAVHA----V----HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAH- 144 (297)
T ss_dssp TTTEEEEEEBSS-SCBCCCEEEC----C----CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECC-
T ss_pred CCCEEEEEEcCC-CceEEEEEee----c----CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecc-
Confidence 999999999986 42 344444 4 9999999999998 8999999999999999997653 24566677
Q ss_pred cCceeeeEEcCCCCC---------CcceEEEee---eEEEEeCCCCe----EEEEecCCcceEEEEe--c-c---ceEEe
Q 001202 350 LSSISSPIVKPNQDC---------KYEPLMSGT---SMMQWDEYGYR----LYAIEEGSSERVLIFS--F-G---KCCLN 407 (1124)
Q Consensus 350 ~~~V~s~~~sp~~~~---------~~~~l~sg~---~i~~W~~~~~~----l~~~~~~~~~~v~~~s--~-~---k~~~s 407 (1124)
...|.+++|+|+... ....+++|+ ++++|+..+++ +.....+|...|..+. + + +.+++
T Consensus 145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence 778999999997310 125788877 89999987654 5667788999885544 4 2 67899
Q ss_pred eccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcC-CCcE
Q 001202 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR-QKKW 485 (1124)
Q Consensus 408 ~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~-sg~w 485 (1124)
++.|+++++|++..+... |... ......|..+|.+++|+|+|++||+|+.||.+ +|+.. .|.|
T Consensus 225 ~s~D~~v~iWd~~~~~~~-------------~~~~--~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w 289 (297)
T 2pm7_B 225 VSQDRTCIIWTQDNEQGP-------------WKKT--LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 289 (297)
T ss_dssp EETTSCEEEEEESSTTSC-------------CEEE--ESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred EECCCcEEEEEeCCCCCc-------------ccee--eeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcE
Confidence 999999999997654321 0000 00113567889999999999999999999999 99986 5677
Q ss_pred EEec
Q 001202 486 RVFG 489 (1124)
Q Consensus 486 k~f~ 489 (1124)
....
T Consensus 290 ~~~~ 293 (297)
T 2pm7_B 290 EPAG 293 (297)
T ss_dssp EEC-
T ss_pred Eecc
Confidence 7543
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.94 E-value=4.8e-25 Score=258.80 Aligned_cols=306 Identities=11% Similarity=0.098 Sum_probs=229.8
Q ss_pred EEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeecc
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~ 299 (1124)
++++|||+.+++++.|+.+++|+..+.+.. .+| ..+ +.+++|++++||+|+.||+|++||+.+ +.....+.
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~--- 136 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF-NLQREIDQ--- 136 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS-CEEEEETT---
T ss_pred eeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC-cceeeecc---
Confidence 466799999999999999999998765432 334 455 668899999999999999999999987 65555443
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEE
Q 001202 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (1124)
Q Consensus 300 ~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~ 376 (1124)
+ |.++|.+++|+|||++|++|+.||+|++||+.+++.+.++.+| ...|.+++|+|++ ..+++|+ +++
T Consensus 137 -~----h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~----~~l~s~~~d~~v~ 206 (420)
T 3vl1_A 137 -A----HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH-RATVTDIAIIDRG----RNVLSASLDGTIR 206 (420)
T ss_dssp -S----SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC-SSCEEEEEEETTT----TEEEEEETTSCEE
T ss_pred -c----ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC-CCcEEEEEEcCCC----CEEEEEcCCCcEE
Confidence 4 9999999999999999999999999999999999999999888 7889999999998 7888877 899
Q ss_pred EEeCCCCeEEEEecCC---cceEEE-----------------------Eec-cceEEeeccCCceeeeEeeecCCeEEEe
Q 001202 377 QWDEYGYRLYAIEEGS---SERVLI-----------------------FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVV 429 (1124)
Q Consensus 377 ~W~~~~~~l~~~~~~~---~~~v~~-----------------------~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~ 429 (1124)
+|+..+++.......+ ...+.. +++ ++.+++++.|+.+++|++..+...
T Consensus 207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---- 282 (420)
T 3vl1_A 207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT---- 282 (420)
T ss_dssp EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE----
T ss_pred EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee----
Confidence 9999999988877642 233322 233 678899999999999998665431
Q ss_pred ecCCCccceeeecccceeeccCCCceEEEEEccCCC-EEEEEcCCCeE-EEEcCCCcE--EEecCcCceeeeEEEEEEec
Q 001202 430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKW--RVFGDITQEQKIQSKGLLWL 505 (1124)
Q Consensus 430 ~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~-~lAvag~dG~v-lwd~~sg~w--k~f~~~~~e~~~~v~gl~W~ 505 (1124)
.....+|..+|.+++|+|+|+ ++++|+.||.+ +||+.+++. ..+... + ...+..+.|.
T Consensus 283 ---------------~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~--~~~v~~~~~~ 344 (420)
T 3vl1_A 283 ---------------IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-E--GTPINNVYFA 344 (420)
T ss_dssp ---------------EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-T--TSCEEEEEEE
T ss_pred ---------------EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-C--CCCceEEEeC
Confidence 112235788999999999999 99999999999 999988642 222110 1 1235566665
Q ss_pred CC-EEEEEEEecCCCeEEEEEeeCCCC---------CCcceEEEeecCCccEEEEeeCC---EEEEEEcCCeEEEEEEE
Q 001202 506 GK-IIVVCNYIDSSNTYELLFYPRYHL---------DQSSLLCRKSLLAKPIVMDVYED---YILVTYRPFDVHIFHVK 571 (1124)
Q Consensus 506 ~~-~liv~~~~~~~~~~elrly~~~~l---------d~~~~l~~~~l~s~~l~l~~~~~---~llv~~~d~~i~l~~~~ 571 (1124)
.+ .++++ +.+..+++|+.... .....+....-.-..+..++.+. .++++..++.+.+|+++
T Consensus 345 ~~~~l~s~-----~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 345 AGALFVSS-----GFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp TTEEEEEE-----TTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred CCCEEEEe-----cCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 55 44444 34568999987421 11111111111122355667776 78888889999999764
No 57
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=4.2e-25 Score=256.58 Aligned_cols=293 Identities=14% Similarity=0.098 Sum_probs=206.8
Q ss_pred hcceeEEEEecCC-cEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEee---cC
Q 001202 67 EGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS---DN 142 (1124)
Q Consensus 67 ~G~~~~v~wSPDg-~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~---d~ 142 (1124)
.+.+.+++|+||+ ++||+++.||.|++|++..+...... ...++...|.++.. ++
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------------------~~~~h~~~v~~~~~~~~~~ 131 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI---------------------QGMGPGDAITGMKFNQFNT 131 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE---------------------CCCSTTCBEEEEEEETTEE
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee---------------------ecCCcCCceeEEEeCCCCC
Confidence 4678899999999 99999999999999999754321111 11123445665554 34
Q ss_pred CeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcce
Q 001202 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (1124)
Q Consensus 143 ~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~ 222 (1124)
..+++++.||.+++|+..+.....+ . ....+...|.++.|
T Consensus 132 ~~l~s~~~d~~i~iwd~~~~~~~~~--~--------------------------------~~~~~~~~v~~~~~------ 171 (383)
T 3ei3_B 132 NQLFVSSIRGATTLRDFSGSVIQVF--A--------------------------------KTDSWDYWYCCVDV------ 171 (383)
T ss_dssp EEEEEEETTTEEEEEETTSCEEEEE--E--------------------------------CCCCSSCCEEEEEE------
T ss_pred CEEEEEeCCCEEEEEECCCCceEEE--e--------------------------------ccCCCCCCeEEEEE------
Confidence 6788889999999865543111110 0 01123355655554
Q ss_pred EEEEecCCcEEEEEecCCceEeeeccccce---ecCCCCeE-EEEEccCCC-EEEEEecCCeEEEEEcCCC---CceeEE
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAES---ASLIRT 294 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~---~~gh~~~v-~va~spdg~-lLAsGs~DgtV~vwd~~~~---~~~~~~ 294 (1124)
+++|+.+++++.|+.+++||.. ++. ..+|.+.+ +++|+|+++ ++++|+.||+|++||+.+. +..+..
T Consensus 172 ----~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 246 (383)
T 3ei3_B 172 ----SVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE 246 (383)
T ss_dssp ----ETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE
T ss_pred ----CCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE
Confidence 4889999999999999999974 332 26899999 999999999 9999999999999999862 233444
Q ss_pred EeeccCCCCCCCCCCeEEEEECC-CCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee
Q 001202 295 VSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1124)
Q Consensus 295 l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~ 373 (1124)
+. |.+.|.+++|+| ||.+|++++.|+.|++||+.++....++.+|. ..... .. .. .
T Consensus 247 ~~---------~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~----~~-----~~----~ 303 (383)
T 3ei3_B 247 MP---------HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP-HRQFQ----HL-----TP----I 303 (383)
T ss_dssp EE---------CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC-BCCCT----TS-----CC----C
T ss_pred ec---------CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc-ccccc----cc-----cc----e
Confidence 43 899999999999 99999999999999999999887777776551 10000 00 00 1
Q ss_pred eEEEEeCCCCeEEEEecCCcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeecc--
Q 001202 374 SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS-- 450 (1124)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~-- 450 (1124)
. ..|.+.+..+. ..+++ ++. +++.|+++++|++..+.. ...+.+
T Consensus 304 ~-~~~~p~~~~~~----------~~~s~dg~~--s~s~d~~i~iwd~~~~~~--------------------~~~l~~~~ 350 (383)
T 3ei3_B 304 K-ATWHPMYDLIV----------AGRYPDDQL--LLNDKRTIDIYDANSGGL--------------------VHQLRDPN 350 (383)
T ss_dssp C-CEECSSSSEEE----------EECBCCTTT--CTTCCCCEEEEETTTCCE--------------------EEEECBTT
T ss_pred E-EeccCCCCceE----------EEecCCccc--ccCCCCeEEEEecCCCce--------------------eeeecCCC
Confidence 1 24554432222 23333 444 888999999999866554 233333
Q ss_pred CCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC
Q 001202 451 QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 451 ~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s 482 (1124)
|...+..++|+|||++||+|+ ||.+ +||+.+
T Consensus 351 ~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 351 AAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 567788889999999999997 8999 999864
No 58
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.7e-25 Score=256.41 Aligned_cols=326 Identities=9% Similarity=0.047 Sum_probs=230.9
Q ss_pred ceEEEEeeCCe-EEEEEcC-CcEEEEec----CCCce------eEEEEeeChH---HHh-hhcceeEEEEecCCcEEEEE
Q 001202 22 QQIIYFKVNNG-LLLIASP-CHIELWSS----SQHKV------RLGKYKRDSE---SVQ-REGENLQAVWSPDTKLIAVV 85 (1124)
Q Consensus 22 ~~iv~fS~dg~-llA~~~~-~~l~IW~~----~~~~~------~l~~~~r~~~---sl~-~~G~~~~v~wSPDg~~Lav~ 85 (1124)
...++|+|+|+ +||+++. +.|+||+. . .+. ....+..... ... +.+.+.+++|+|||++||++
T Consensus 48 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 126 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQ-EGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG 126 (425)
T ss_dssp CSEEEECSSCTTEEEEEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred eEEEEECCCCCcEEEEecCCceEEEEEEecccC-CccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence 34588999999 9998775 68999999 6 333 2222222110 011 23478899999999999999
Q ss_pred eCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEe--ecCCeEEEEecCCcEEEEeccCcc
Q 001202 86 TSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SDNKHMLLGLSDGSLYSISWKGEF 163 (1124)
Q Consensus 86 t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~d~~~llv~t~dg~v~~~~Wd~~~ 163 (1124)
+.+|.|++|+.. +.... .+..+...|.++. +++..+++++.||.+++|+.....
T Consensus 127 ~~dg~i~i~~~~-~~~~~-----------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 127 VENGELRLWNKT-GALLN-----------------------VLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT 182 (425)
T ss_dssp ETTSCEEEEETT-SCEEE-----------------------EECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE
T ss_pred eCCCeEEEEeCC-CCeee-----------------------eccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc
Confidence 999999999922 11100 1112233455544 567789999999999986554321
Q ss_pred ccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceE
Q 001202 164 YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK 243 (1124)
Q Consensus 164 ~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~ 243 (1124)
.. ..+.........+.. .........+ ..+.+++++. ++++..++.+.
T Consensus 183 ~~-~~~~~~~~~~~~~~~--------------------~~~~~~~~~~----------~~~~~~~~~~-~~~~~~~g~i~ 230 (425)
T 1r5m_A 183 VM-QHFELKETGGSSINA--------------------ENHSGDGSLG----------VDVEWVDDDK-FVIPGPKGAIF 230 (425)
T ss_dssp EE-EEECCC-----------------------------------CCCB----------SCCEEEETTE-EEEECGGGCEE
T ss_pred EE-EEeeccccCccceee--------------------ccccCCccee----------eEEEEcCCCE-EEEEcCCCeEE
Confidence 11 111000000000000 0000111112 2344456655 66778889999
Q ss_pred eeeccccce---ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCC
Q 001202 244 LAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN 319 (1124)
Q Consensus 244 ~wd~~~~~~---~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG 319 (1124)
+|+..+.+. ..+|...+ +++|+|++++|++|+.||.|++||+.+ ++....+. + |.+.|.+++|+|||
T Consensus 231 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~----~----~~~~i~~~~~~~~~ 301 (425)
T 1r5m_A 231 VYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFY----G----HSQSIVSASWVGDD 301 (425)
T ss_dssp EEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSEEEC----C----CSSCEEEEEEETTT
T ss_pred EEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CccceEec----C----CCccEEEEEECCCC
Confidence 999876543 26788889 999999999999999999999999987 67677665 4 89999999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCe------------
Q 001202 320 SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR------------ 384 (1124)
Q Consensus 320 ~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~------------ 384 (1124)
.+++++.||.|++||+.++..+..+..| ...+.+++|+|++ ..+++|+ .+.+|+..+++
T Consensus 302 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~----~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 375 (425)
T 1r5m_A 302 -KVISCSMDGSVRLWSLKQNTLLALSIVD-GVPIFAGRISQDG----QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDG 375 (425)
T ss_dssp -EEEEEETTSEEEEEETTTTEEEEEEECT-TCCEEEEEECTTS----SEEEEEETTSCEEEEECHHHHC-----------
T ss_pred -EEEEEeCCCcEEEEECCCCcEeEecccC-CccEEEEEEcCCC----CEEEEEECCCeEEEEECCCCccceeeeeccccc
Confidence 9999999999999999999999999887 6789999999998 7888776 89999999887
Q ss_pred --------EEEEecCCcc--eEEEEe--c-cceEEeeccCCceeeeEe
Q 001202 385 --------LYAIEEGSSE--RVLIFS--F-GKCCLNRGVSGMTYARQV 419 (1124)
Q Consensus 385 --------l~~~~~~~~~--~v~~~s--~-~k~~~s~s~d~~v~~w~l 419 (1124)
++....+|.. .|..+. + ++.+++++.|+.+++|++
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 376 ILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp ---CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred ccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 8888888865 775544 4 778999999999999986
No 59
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.9e-26 Score=265.72 Aligned_cols=326 Identities=13% Similarity=0.156 Sum_probs=228.2
Q ss_pred EEEEeeCCe-EEEEE----------c-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeE
Q 001202 24 IIYFKVNNG-LLLIA----------S-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYL 91 (1124)
Q Consensus 24 iv~fS~dg~-llA~~----------~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l 91 (1124)
.++|||||+ ++|++ + +++|+||+.. ..... +....+.+.+.+.+++|+||+++||+++.+|.|
T Consensus 17 ~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~-~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 17 TFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLL-AADSE----KPIASLQVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp BCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESS-SGGGC----SCSCCCCCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred eEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEcc-CCCCC----cEEEEEecCCceEEEEECCCCCeEEEEccCCeE
Confidence 377999997 88887 3 4589999996 33211 011112345778899999999999999999999
Q ss_pred EEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEe--ec-CCeEEEEecCCcEEEEeccCcccccee
Q 001202 92 HIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SD-NKHMLLGLSDGSLYSISWKGEFYGAFE 168 (1124)
Q Consensus 92 ~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~d-~~~llv~t~dg~v~~~~Wd~~~~~~~~ 168 (1124)
++|++....... .....+.++...|.++. ++ +..+++++.||.|++ |+........
T Consensus 92 ~vw~~~~~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i--wd~~~~~~~~ 150 (416)
T 2pm9_A 92 ELYSTNEANNAI-------------------NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFI--WDMNKCTESP 150 (416)
T ss_dssp EEECCSSTTSCC-------------------CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEB--CBTTTTSSCT
T ss_pred EEeecccccccc-------------------cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEE--EECCCCcccc
Confidence 999997521100 00011222333454444 44 667888999999987 5543322100
Q ss_pred eccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecC-CcEEEEEecCCceEeeec
Q 001202 169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEF 247 (1124)
Q Consensus 169 l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~d-G~~~~~~~~d~~i~~wd~ 247 (1124)
. ... ++ .......+...|.++.|+ ++ +.++++++.++.+++||.
T Consensus 151 -----~---~~~--~~---------------~~~~~~~~~~~v~~~~~~----------~~~~~~l~~~~~dg~v~iwd~ 195 (416)
T 2pm9_A 151 -----S---NYT--PL---------------TPGQSMSSVDEVISLAWN----------QSLAHVFASAGSSNFASIWDL 195 (416)
T ss_dssp -----T---TCC--CB---------------CCCCSCCSSCCCCEEEEC----------SSCTTEEEEESSSSCEEEEET
T ss_pred -----c---ccc--cc---------------ccccccCCCCCeeEEEeC----------CCCCcEEEEEcCCCCEEEEEC
Confidence 0 000 00 000123455666666665 66 688888899999999998
Q ss_pred ccccee---cCC------CCeE-EEEEccCC-CEEEEEecCC---eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEE
Q 001202 248 IKIDKE---LGS------GDAV-CASIAPEQ-QILAVGTRRG---VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI 313 (1124)
Q Consensus 248 ~~~~~~---~gh------~~~v-~va~spdg-~lLAsGs~Dg---tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~l 313 (1124)
.+++.. ..| ...+ +++|+|++ .++++|+.|| +|++||+.+.......+. .+|.+.|.++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-------~~~~~~v~~~ 268 (416)
T 2pm9_A 196 KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-------QGHQKGILSL 268 (416)
T ss_dssp TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-------SCCSSCEEEE
T ss_pred CCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee-------cCccCceeEE
Confidence 876543 233 6778 99999997 6999999999 999999987323333221 1389999999
Q ss_pred EECC-CCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEe
Q 001202 314 AWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE 389 (1124)
Q Consensus 314 awSP-DG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~ 389 (1124)
+|+| +|.+|++|+.||.|++||+.+++++.++.+| ...|.+++|+|++. ..+++++ .+++|+..+.......
T Consensus 269 ~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~---~~l~s~~~d~~i~iw~~~~~~~~~~~ 344 (416)
T 2pm9_A 269 DWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-GNWCFKTKFAPEAP---DLFACASFDNKIEVQTLQNLTNTLDE 344 (416)
T ss_dssp EECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS-SSCCCCEEECTTCT---TEEEECCSSSEEEEEESCCCCCSSCC
T ss_pred EeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC-CCceEEEEECCCCC---CEEEEEecCCcEEEEEccCCCCCccc
Confidence 9999 9999999999999999999999999999988 67899999999862 4667765 8999998765421111
Q ss_pred -----------------cC------------------CcceE--EEEec-cceEEeeccCCceeeeEeee
Q 001202 390 -----------------EG------------------SSERV--LIFSF-GKCCLNRGVSGMTYARQVIY 421 (1124)
Q Consensus 390 -----------------~~------------------~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~ 421 (1124)
.+ +...+ .+|++ ++.+++++.|+++++|++..
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 345 QETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp ----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred ccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 00 23333 56777 88999999999999999754
No 60
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.94 E-value=2.6e-24 Score=275.18 Aligned_cols=378 Identities=11% Similarity=0.142 Sum_probs=269.6
Q ss_pred hcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEE--EeecCCe
Q 001202 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKH 144 (1124)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~d~~~ 144 (1124)
.+.+.+++|+|||+.||+++.+|.|++|++..+..... +.++...|.+ +.++++.
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~-----------------------~~~~~~~v~~~~~s~~~~~ 69 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS-----------------------IQVTETPVRAGKFIARKNW 69 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE-----------------------EECCSSCEEEEEEEGGGTE
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE-----------------------EecCCCcEEEEEEeCCCCE
Confidence 46788999999999999999999999999865432111 1122333444 5567888
Q ss_pred EEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEE
Q 001202 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1124)
Q Consensus 145 llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~ 224 (1124)
+++++.||.|++|+++.. .... .+..+...|.++.|+
T Consensus 70 l~~~~~dg~i~vw~~~~~--~~~~----------------------------------~~~~~~~~v~~~~~s------- 106 (814)
T 3mkq_A 70 IIVGSDDFRIRVFNYNTG--EKVV----------------------------------DFEAHPDYIRSIAVH------- 106 (814)
T ss_dssp EEEEETTSEEEEEETTTC--CEEE----------------------------------EEECCSSCEEEEEEC-------
T ss_pred EEEEeCCCeEEEEECCCC--cEEE----------------------------------EEecCCCCEEEEEEe-------
Confidence 999999999998665432 1110 123456667766665
Q ss_pred EEecCCcEEEEEecCCceEeeeccccce----ecCCCCeE-EEEEcc-CCCEEEEEecCCeEEEEEcCCCCceeEEEeec
Q 001202 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK----ELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1124)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~wd~~~~~~----~~gh~~~v-~va~sp-dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~ 298 (1124)
|||+.+++++.|+++++|+..++.. ..+|...+ +++|+| ++..+++|+.||+|++||+.. +.....+.
T Consensus 107 ---~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~-- 180 (814)
T 3mkq_A 107 ---PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLT-- 180 (814)
T ss_dssp ---SSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC-SSCSEEEE--
T ss_pred ---CCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcceeEEe--
Confidence 7888999999999999999876522 26898989 999999 899999999999999999987 55555554
Q ss_pred cCCCCCCCCCCeEEEEECC--CCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---
Q 001202 299 DWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (1124)
Q Consensus 299 ~~g~~~~h~g~V~~lawSP--DG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~--- 373 (1124)
+ .|.++|.+++|+| ||.+|++|+.||.|++||+.++....++.+| ...|++++|+|++ ..+++|+
T Consensus 181 --~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~l~~~~~dg 250 (814)
T 3mkq_A 181 --T---GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH-MSNVSFAVFHPTL----PIIISGSEDG 250 (814)
T ss_dssp --C---CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSS----SEEEEEETTS
T ss_pred --c---CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCC----CEEEEEeCCC
Confidence 2 2558899999999 9999999999999999999999999999888 6789999999998 7888876
Q ss_pred eEEEEeCCCCeEEEEecCCcceEEEEec---cce-EEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeec
Q 001202 374 SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKC-CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (1124)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~-~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~ 449 (1124)
++.+|+..+++.......+...+..+.+ ++. +++.+.++.+.+|++..+
T Consensus 251 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 303 (814)
T 3mkq_A 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND--------------------------- 303 (814)
T ss_dssp CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC---------------------------
T ss_pred eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC---------------------------
Confidence 7999999999998888888888865554 332 355555666666664221
Q ss_pred cCCCceEEEEEccCCCEEEEEcCCCeE--EEEcCCC-cEEEe-cCcC-------ceeeeEEEEEEecCC--EEEEEEEec
Q 001202 450 SQNWPVQHVAASKDGMFLAVAGLHGLI--LYDIRQK-KWRVF-GDIT-------QEQKIQSKGLLWLGK--IIVVCNYID 516 (1124)
Q Consensus 450 ~~~~~I~~va~SpdG~~lAvag~dG~v--lwd~~sg-~wk~f-~~~~-------~e~~~~v~gl~W~~~--~liv~~~~~ 516 (1124)
...++++|+|+.+++++.++.. ++..... .|..- +... ......+..+.|.++ ++++++
T Consensus 304 -----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~--- 375 (814)
T 3mkq_A 304 -----EPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG--- 375 (814)
T ss_dssp -----SCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE---
T ss_pred -----CceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec---
Confidence 1237889999999999887753 3332111 11110 0000 001122457788644 555552
Q ss_pred CCCeEEEEEeeCCCCCCcceEEEeecCCccEEEEeeCCEEEEEEcCCeEEEEE
Q 001202 517 SSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFH 569 (1124)
Q Consensus 517 ~~~~~elrly~~~~ld~~~~l~~~~l~s~~l~l~~~~~~llv~~~d~~i~l~~ 569 (1124)
+ ..+.+|+.... ...... +...+..++.+..+++.+.++.+.+|+
T Consensus 376 -~--~~~~i~~~~~~---~~~~~~--~i~~~~~spdg~~la~~~~~g~v~l~~ 420 (814)
T 3mkq_A 376 -D--GEYVIYTALAW---RNKAFG--KCQDFVWGPDSNSYALIDETGQIKYYK 420 (814)
T ss_dssp -T--TEEEEEETTTT---EEEEEE--ECSEEEECTTSSCEEEECTTCCEEEEE
T ss_pred -C--CEEEEEECccc---cccCCC--ceEEEEEeCCCCeEEEEeCCCcEEEEE
Confidence 2 37889986411 111111 223466677788888888999999995
No 61
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.94 E-value=1.6e-25 Score=253.95 Aligned_cols=252 Identities=16% Similarity=0.143 Sum_probs=193.4
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce-----ecCCCCeE-EEEEcc--CCCEEEEEe
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAV-CASIAP--EQQILAVGT 275 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~-----~~gh~~~v-~va~sp--dg~lLAsGs 275 (1124)
..+|...|.++.|+ +||+++++++.|+++++||..++.. +.+|.+.| +++|+| ++++||+|+
T Consensus 9 ~~~H~~~V~~v~~s----------~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s 78 (316)
T 3bg1_A 9 DTSHEDMIHDAQMD----------YYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCS 78 (316)
T ss_dssp -----CCEEEEEEC----------GGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEE
T ss_pred cccccCeEEEeeEc----------CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEE
Confidence 44677788776665 8899999999999999999876532 36999999 999986 489999999
Q ss_pred cCCeEEEEEcCCCCc--eeEEEeeccCCCCCCCCCCeEEEEECCC--CCEEEEEECCCcEEEEEcCCCe---eeEEeccC
Q 001202 276 RRGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR---LMSTIRQI 348 (1124)
Q Consensus 276 ~DgtV~vwd~~~~~~--~~~~l~~~~~g~~~~h~g~V~~lawSPD--G~~Lasgs~Dg~I~vWdv~~~~---l~~tl~~h 348 (1124)
.||+|++||+.+ +. ...++. + |.++|.+++|+|+ |.+||+|+.|++|++|++.++. ....+.+|
T Consensus 79 ~D~~v~iWd~~~-~~~~~~~~~~----~----h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 79 YDRKVIIWREEN-GTWEKSHEHA----G----HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp TTSCEEEECCSS-SCCCEEEEEC----C----CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred CCCEEEEEECCC-CcceEEEEcc----C----CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 999999999986 43 344444 4 9999999999998 8899999999999999998753 23445566
Q ss_pred CcCceeeeEEcCCCCC-------------CcceEEEee---eEEEEeCCCC---eEEEEecCCcceEEEEec---c----
Q 001202 349 SLSSISSPIVKPNQDC-------------KYEPLMSGT---SMMQWDEYGY---RLYAIEEGSSERVLIFSF---G---- 402 (1124)
Q Consensus 349 ~~~~V~s~~~sp~~~~-------------~~~~l~sg~---~i~~W~~~~~---~l~~~~~~~~~~v~~~s~---~---- 402 (1124)
...|.+++|+|+... ....+++|+ ++++|+..+. ++.....+|...|..+.+ +
T Consensus 150 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~ 228 (316)
T 3bg1_A 150 -TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPT 228 (316)
T ss_dssp -SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSC
T ss_pred -cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCC
Confidence 678999999997310 125688876 8999998754 466667889988965555 3
Q ss_pred ceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcC
Q 001202 403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (1124)
Q Consensus 403 k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~ 481 (1124)
+.+++++.|+++++|++...... .| .+..+..|..+|.+++|+|+|++||+||.||.+ +|+..
T Consensus 229 ~~las~s~D~~v~iw~~~~~~~~------------~~----~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 229 STIASCSQDGRVFIWTCDDASSN------------TW----SPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEEETTCEEEEEECSSTTCC------------CC----BCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ceEEEEcCCCeEEEEEccCcccc------------ch----hhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 67999999999999997653210 00 122344678899999999999999999999999 99975
Q ss_pred -CCcEEEecCc
Q 001202 482 -QKKWRVFGDI 491 (1124)
Q Consensus 482 -sg~wk~f~~~ 491 (1124)
.+.|......
T Consensus 293 ~~g~~~~~~~~ 303 (316)
T 3bg1_A 293 VDGQWVCISDV 303 (316)
T ss_dssp TTSCEEEEEEC
T ss_pred CCCcEEEeeec
Confidence 5677655433
No 62
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.94 E-value=6.2e-26 Score=269.34 Aligned_cols=303 Identities=13% Similarity=0.100 Sum_probs=200.5
Q ss_pred cceeEEEEec-CCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEee---cCC
Q 001202 68 GENLQAVWSP-DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS---DNK 143 (1124)
Q Consensus 68 G~~~~v~wSP-Dg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~---d~~ 143 (1124)
+.+++++|+| +++.||+|+.||.|+|||+..+...... .+.++...|+++.. ++.
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~---------------------~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI---------------------KGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE---------------------CCCSSSCCCCEEEECSSCTT
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE---------------------EccCCCCCEEEEEEeCCCCC
Confidence 4588999999 6789999999999999999765432111 12234445666553 456
Q ss_pred eEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceE
Q 001202 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1124)
Q Consensus 144 ~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~ 223 (1124)
.+++++.||+|++|+.++.....+. ........+ ..
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~~~~~----------------------------------~~~~~~~~~----------~~ 214 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNILRVFA----------------------------------SSDTINIWF----------CS 214 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEEEEEE----------------------------------CCSSCSCCC----------CC
T ss_pred EEEEEeCCCEEEEeeccCCceeEEe----------------------------------ccCCCCccE----------EE
Confidence 8888999999998654432111110 000111222 23
Q ss_pred EEEecCCcEEEEEecCCceEeeeccccce--ecCCCCeE-EEEEccCCC-EEEEEecCCeEEEEEcCCCCceeEEEeecc
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~~--~~gh~~~v-~va~spdg~-lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~ 299 (1124)
+.+++||+++++++.|+++++||...... +.+|.+.| +++|+|++. ++|+|+.||+|++||+.. ......+.
T Consensus 215 ~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~-~~~~~~~~--- 290 (435)
T 4e54_B 215 LDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ-VRGKASFL--- 290 (435)
T ss_dssp EEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTT-CCSSSCCS---
T ss_pred EEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccc-ccccceEE---
Confidence 55668999999999999999999754322 36899999 999999976 799999999999999987 33222221
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEe
Q 001202 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWD 379 (1124)
Q Consensus 300 ~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~ 379 (1124)
...+|.++|++++|+|||.+|++|+.||+|+|||+.++.+...+..|.... . ..+ ......|+
T Consensus 291 --~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~---------~----~~~--~~~~~~~~ 353 (435)
T 4e54_B 291 --YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH---------F----QHL--TPIKAAWH 353 (435)
T ss_dssp --BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC---------C----SSS--CCCBCEEC
T ss_pred --EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc---------c----ccc--eeEEEEEc
Confidence 112399999999999999999999999999999999988777776652110 0 000 01112354
Q ss_pred CCCCeEEEEecCCcceEEEEeccc-eEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEE
Q 001202 380 EYGYRLYAIEEGSSERVLIFSFGK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (1124)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~s~~k-~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~v 458 (1124)
+.+..+....... +. .+.++..++++++|+...+... ...+.+|...|.++
T Consensus 354 ~~~~~~~~~~~~d---------~~~~~~~~~~~~~i~iwd~~~g~~~-------------------~~l~~~~~~~v~s~ 405 (435)
T 4e54_B 354 PRYNLIVVGRYPD---------PNFKSCTPYELRTIDVFDGNSGKMM-------------------CQLYDPESSGISSL 405 (435)
T ss_dssp SSSSCEEEECCCC---------TTSCCSSTTCCCCEEEECSSSCCEE-------------------EEECCSSCCCCCCE
T ss_pred CCCCEEEEEEcCC---------CCeEEEEecCCCEEEEEECCCCcEE-------------------EEEeCCCCCcEEEE
Confidence 4433322221110 12 2234455668899987665441 12233677788887
Q ss_pred -EEccCCCEEEEEcCCCeE-EEEcCCCcE
Q 001202 459 -AASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (1124)
Q Consensus 459 -a~SpdG~~lAvag~dG~v-lwd~~sg~w 485 (1124)
+|||||++||+|+ |+.| +||+++++-
T Consensus 406 ~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 406 NEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 6999999999887 7788 999998763
No 63
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.94 E-value=2.5e-24 Score=245.78 Aligned_cols=306 Identities=11% Similarity=0.050 Sum_probs=205.0
Q ss_pred hhcceeEEEEecCCcEEE-EEeC---CCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEee-
Q 001202 66 REGENLQAVWSPDTKLIA-VVTS---SLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS- 140 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg~~La-v~t~---dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~- 140 (1124)
+.+.+.+++|+||+..++ +++. ||.|++|++..+..... . . .++...|.+++.
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~-------------~--~-------~~~~~~v~~~~~~ 74 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL-------------R--E-------IEKAKPIKCGTFG 74 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE-------------E--E-------EEESSCEEEEECT
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce-------------e--e-------ecccCcEEEEEEc
Confidence 346788999999996555 5554 89999999986432100 0 0 012334555554
Q ss_pred -c---CCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEe
Q 001202 141 -D---NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (1124)
Q Consensus 141 -d---~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~ 216 (1124)
+ +..+++++.||.+++|+.+.... .. ..+..+...|.++.|
T Consensus 75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~----------------------------------~~~~~~~~~v~~~~~ 119 (357)
T 3i2n_A 75 ATSLQQRYLATGDFGGNLHIWNLEAPEM-PV----------------------------------YSVKGHKEIINAIDG 119 (357)
T ss_dssp TCCTTTCCEEEEETTSCEEEECTTSCSS-CS----------------------------------EEECCCSSCEEEEEE
T ss_pred CCCCCCceEEEecCCCeEEEEeCCCCCc-cE----------------------------------EEEEecccceEEEee
Confidence 4 47788999999999854443210 11 023466778888877
Q ss_pred cCCcceEEEEecCCcEEEEEecCCceEeeeccccce-e---cCCC----CeE-EEE----EccCCCEEEEEecCCeEEEE
Q 001202 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-E---LGSG----DAV-CAS----IAPEQQILAVGTRRGVVELY 283 (1124)
Q Consensus 217 s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~-~---~gh~----~~v-~va----~spdg~lLAsGs~DgtV~vw 283 (1124)
.+.. +++++|+.+++++.|+++++||..+++. . ..|. ..+ +++ |+|+++++++|+.||.|++|
T Consensus 120 ~~~~----~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~ 195 (357)
T 3i2n_A 120 IGGL----GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF 195 (357)
T ss_dssp ESGG----GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEE
T ss_pred cccc----ccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEE
Confidence 6532 4568999999999999999999876542 1 2222 256 787 78999999999999999999
Q ss_pred EcCCCCceeEEEeeccCCCCCCCCCCeEEEEECC---CCCEEEEEECCCcEEEEEcCCCeeeEEec-----cCCcCceee
Q 001202 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP---DNSAFAVGWKSRGLTVWSVSGCRLMSTIR-----QISLSSISS 355 (1124)
Q Consensus 284 d~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP---DG~~Lasgs~Dg~I~vWdv~~~~l~~tl~-----~h~~~~V~s 355 (1124)
|+.+ +....... |.+.|.+++|+| +|..|++|+.||.|++||+.++.....+. +| ...|++
T Consensus 196 d~~~-~~~~~~~~---------~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~ 264 (357)
T 3i2n_A 196 DLRN-MALRWETN---------IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH-KSTVWQ 264 (357)
T ss_dssp ETTT-TEEEEEEE---------CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC-SSCEEE
T ss_pred ECcc-CceeeecC---------CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC-cCCEEE
Confidence 9987 65544433 889999999999 99999999999999999998766544433 44 455666
Q ss_pred eEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCc
Q 001202 356 PIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (1124)
Q Consensus 356 ~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~ 435 (1124)
++|+|++ .. .+++++.|+.+++|++..+....... .....
T Consensus 265 ~~~~~~~----~~-----------------------------------~l~~~~~dg~i~iwd~~~~~~~~~~~-~~g~~ 304 (357)
T 3i2n_A 265 VRHLPQN----RE-----------------------------------LFLTAGGAGGLHLWKYEYPIQRSKKD-SEGIE 304 (357)
T ss_dssp EEEETTE----EE-----------------------------------EEEEEETTSEEEEEEEECCSCC--CC-TTSCC
T ss_pred EEECCCC----Cc-----------------------------------EEEEEeCCCcEEEeecCCCccccccc-CCCCc
Confidence 6666554 20 23455566666666655443311000 00000
Q ss_pred cceeeecccceeeccCCCceEEEEEccCCCEEE-EEcCCCeE-EEEcCCC
Q 001202 436 ELKILHLNLPVSYISQNWPVQHVAASKDGMFLA-VAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 436 ~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lA-vag~dG~v-lwd~~sg 483 (1124)
...-...+....+.+|..+|.+++|+|+|++++ +|+.||.+ +||+.+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 305 MGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 000001122445678999999999999999999 79999999 9998763
No 64
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.5e-25 Score=271.80 Aligned_cols=317 Identities=8% Similarity=0.003 Sum_probs=201.9
Q ss_pred eCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHh-hhcceeEEEEecC------CcEEEEEeCCCeEEEEEeeecC
Q 001202 29 VNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQ-REGENLQAVWSPD------TKLIAVVTSSLYLHIFKVQITE 100 (1124)
Q Consensus 29 ~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~-~~G~~~~v~wSPD------g~~Lav~t~dg~l~i~~v~~~~ 100 (1124)
|++++||+++ |++|+||+.. .+........ .+. +.|.+..++|+|+ +.+||+++.||+|++|++..+.
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~-~~~~~~~~~~---~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~ 246 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMN-TSTLHCVKVQ---TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA 246 (524)
T ss_dssp -----------CEEEEEEEEE-TTTCCEEEEE---EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred hhhhhhccCCCCceEEEEEcc-CCCCCceEEE---EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence 4444555544 4579999985 3321111000 011 2477889999997 5799999999999999997543
Q ss_pred cee--ecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeec-CCeEEEEecCCcEEEEeccCccccceeeccCCCCcc
Q 001202 101 KSI--QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (1124)
Q Consensus 101 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d-~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~ 177 (1124)
... ..... .....+.++...|+|++.. ++.+++|+.||+|++|+.. .....
T Consensus 247 ~~~~~~~~~~--------------~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~--~~~~~---------- 300 (524)
T 2j04_B 247 TDVHVFKMCE--------------KPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLT--DPEVP---------- 300 (524)
T ss_dssp SSSSEEECCC--------------SCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETT--BCSSC----------
T ss_pred cccccceeec--------------CceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECC--CCCCc----------
Confidence 210 00000 0001234455678887753 4578889999999985443 21100
Q ss_pred ccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCC-cEEEEEecCCceEeeeccccce---e
Q 001202 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNG-QLMSCSVSKKGLKLAEFIKIDK---E 253 (1124)
Q Consensus 178 ~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG-~~~~~~~~d~~i~~wd~~~~~~---~ 253 (1124)
...+..|...|.++.+ +++++| +++++++.|+++++||..+++. .
T Consensus 301 -----------------------~~~~~~H~~~V~sv~~--------~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~ 349 (524)
T 2j04_B 301 -----------------------SFYDQVHDSYILSVST--------AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTT 349 (524)
T ss_dssp -----------------------SEEEECSSSCEEEEEE--------ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEE
T ss_pred -----------------------eEEeecccccEEEEEE--------EcCCCCCeEEEEeccCCeEEEEECCCCCccccc
Confidence 0012356677876521 234788 8999999999999999877643 2
Q ss_pred cCCCC--eE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCc
Q 001202 254 LGSGD--AV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (1124)
Q Consensus 254 ~gh~~--~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~ 330 (1124)
.+|.. .+ +++|+|+++.+|+|+.|++|++||+.. +.+..++. + |.++|++|+|||||..||+|+.||+
T Consensus 350 ~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~----g----H~~~V~sva~Sp~g~~l~Sgs~Dgt 420 (524)
T 2j04_B 350 VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLV----S----RETTITAIGVSRLHPMVLAGSADGS 420 (524)
T ss_dssp EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEE----E----CSSCEEEEECCSSCCBCEEEETTTE
T ss_pred ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeee----c----CCCceEEEEeCCCCCeEEEEECCCE
Confidence 45543 36 999999999999999999999999988 77667776 5 9999999999999999999999999
Q ss_pred EEEEEcCCCeeeEEecc----CCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCC-CCeEEEEecCCcceE--EEEec-c
Q 001202 331 LTVWSVSGCRLMSTIRQ----ISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEY-GYRLYAIEEGSSERV--LIFSF-G 402 (1124)
Q Consensus 331 I~vWdv~~~~l~~tl~~----h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~-~~~l~~~~~~~~~~v--~~~s~-~ 402 (1124)
|++||+.++ ++..+++ ++...+.+++|+|++ +.+.......+|... ++.+.....+|...| ++|++ +
T Consensus 421 v~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g----~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~ 495 (524)
T 2j04_B 421 LIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKD----DKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETS 495 (524)
T ss_dssp EECCBSCSS-TTTCC------CCCCEEEECBCCSSS----CEEEECCCCCCCC-------------CCCSCCCEEECCST
T ss_pred EEEEechHh-hccccccCccceeeeEEEEeccCCCC----CeEEccCCceecccccCCcceeeecCCCceEEEEECCCCC
Confidence 999999765 3332221 112246789999987 433211122233222 345666777888888 56666 3
Q ss_pred ---ceEEeeccCCceeeeEee
Q 001202 403 ---KCCLNRGVSGMTYARQVI 420 (1124)
Q Consensus 403 ---k~~~s~s~d~~v~~w~l~ 420 (1124)
..+++|+.||++++|++.
T Consensus 496 ~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 496 AGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp TTTTEEEEECTTSEEEEEECS
T ss_pred CccHHHHhhccCceEEEEEcc
Confidence 378999999999999953
No 65
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.94 E-value=3.5e-24 Score=252.85 Aligned_cols=273 Identities=16% Similarity=0.226 Sum_probs=209.7
Q ss_pred eEEEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCce
Q 001202 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~ 102 (1124)
..+++|+++ +||++.+++|+|||.. .+..+..+... .+.+.+.+|+|+|||++||+|+.||.|++|++..+...
T Consensus 109 ~~l~wS~~n-~lAvgld~tV~lWd~~-tg~~~~~~~~~----~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 109 NLVDWSSGN-VLAVALDNSVYLWSAS-SGDILQLLQME----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp BCEEECTTS-EEEEEETTEEEEEETT-TCCEEEEEECC----STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred eeEEECCCC-EEEEEeCCEEEEEECC-CCCEEEEEEec----CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE
Confidence 457888765 8888889999999996 55443333211 12356889999999999999999999999998754321
Q ss_pred eecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccc
Q 001202 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (1124)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i 182 (1124)
..+.++...+.+++.++..+++|+.|+.+..+.+........
T Consensus 183 -----------------------~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~--------------- 224 (420)
T 4gga_A 183 -----------------------RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA--------------- 224 (420)
T ss_dssp -----------------------EEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE---------------
T ss_pred -----------------------EEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeE---------------
Confidence 112344557888899999999999999998754432211100
Q ss_pred cccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce-------ecC
Q 001202 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-------ELG 255 (1124)
Q Consensus 183 ~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~-------~~g 255 (1124)
.+..+...+.. +.++++|+.++++..|+.+++|+..+++. ..+
T Consensus 225 --------------------~~~~h~~~~~~----------~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~ 274 (420)
T 4gga_A 225 --------------------TLSGHSQEVCG----------LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 274 (420)
T ss_dssp --------------------EEECCSSCEEE----------EEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECC
T ss_pred --------------------Eecccccceee----------eeecCCCCeeeeeeccccceEEeeccccccceeeeeecc
Confidence 12244455544 44558899999999999999999876532 257
Q ss_pred CCCeE-EEEEccCC-CEEEE--EecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE--CCC
Q 001202 256 SGDAV-CASIAPEQ-QILAV--GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW--KSR 329 (1124)
Q Consensus 256 h~~~v-~va~spdg-~lLAs--Gs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs--~Dg 329 (1124)
|...| +++|+|.+ .++++ |+.||+|++||+.+ +.+...+. +...|.++.|+|++..+++++ .|+
T Consensus 275 ~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t-~~~~~~~~---------~~~~v~~~~~~~~~~~lv~~sg~~d~ 344 (420)
T 4gga_A 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVD---------AHSQVCSILWSPHYKELISGHGFAQN 344 (420)
T ss_dssp CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT-TEEEEEEE---------CSSCEEEEEEETTTTEEEEEECTTTC
T ss_pred cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc-cccceeec---------cccceeeeeecCCCCeEEEEEecCCC
Confidence 88899 99999965 56665 45899999999998 77777776 456799999999999988876 789
Q ss_pred cEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCe
Q 001202 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR 384 (1124)
Q Consensus 330 ~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~ 384 (1124)
.|+|||+.+++++.++.+| .+.|++++|+|++ ..++||+ ++++|+.....
T Consensus 345 ~I~iwd~~~~~~v~~l~gH-~~~V~~l~~spdg----~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 345 QLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDG----ATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp CEEEEETTTCCEEEEECCC-SSCEEEEEECTTS----SCEEEEETTTEEEEECCSCSS
T ss_pred EEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCC----CEEEEEecCCeEEEEECCCCC
Confidence 9999999999999999998 7899999999998 8888887 89999876543
No 66
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.93 E-value=2.2e-24 Score=246.92 Aligned_cols=288 Identities=11% Similarity=0.150 Sum_probs=211.9
Q ss_pred ccccceEEEEeec------CCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeec
Q 001202 129 AEKGLSVSNIVSD------NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSD 202 (1124)
Q Consensus 129 ~~~~~~v~~i~~d------~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~ 202 (1124)
.++...|.+++.. ...+++++.+|.|++|++... .... . +...
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~--~~~~------------~-----------------~~~~ 63 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ--GEIR------------L-----------------LQSY 63 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG--GCEE------------E-----------------EEEE
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC--cEEE------------e-----------------eeec
Confidence 3566778887765 245777778888888655422 1110 0 0000
Q ss_pred ccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEcc-CCCEEEEEecC
Q 001202 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAP-EQQILAVGTRR 277 (1124)
Q Consensus 203 ~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~sp-dg~lLAsGs~D 277 (1124)
....+...|.++.|+|+.. ++|+++++++.|+++++||..+++.. .+|.+.+ +++|+| ++.+||+|+.|
T Consensus 64 ~~~~~~~~v~~~~~~~~~~------~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d 137 (366)
T 3k26_A 64 VDADADENFYTCAWTYDSN------TSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD 137 (366)
T ss_dssp ECSCTTCCEEEEEEEECTT------TCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETT
T ss_pred cccCCCCcEEEEEeccCCC------CCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCC
Confidence 1123556777777764321 23789999999999999998876543 6899999 999999 99999999999
Q ss_pred CeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEecc----------
Q 001202 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ---------- 347 (1124)
Q Consensus 278 gtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~---------- 347 (1124)
|+|++||+.+ ++....+.. ..+|.+.|.+++|+|+|..|++|+.||.|++||+.+++....+..
T Consensus 138 g~i~iwd~~~-~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 211 (366)
T 3k26_A 138 HALRLWNIQT-DTLVAIFGG-----VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTN 211 (366)
T ss_dssp SCEEEEETTT-TEEEEEECS-----TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCS
T ss_pred CeEEEEEeec-CeEEEEecc-----cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCc
Confidence 9999999987 666666521 113899999999999999999999999999999987765443332
Q ss_pred ------------------CCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCe--------------EEEEecCC
Q 001202 348 ------------------ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR--------------LYAIEEGS 392 (1124)
Q Consensus 348 ------------------h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~--------------l~~~~~~~ 392 (1124)
| ...|.+++|+ + +.+++++ .+++|+..+.+ +.....+|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (366)
T 3k26_A 212 RPFISQKIHFPDFSTRDIH-RNYVDCVRWL--G----DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS 284 (366)
T ss_dssp SCCCCEEECCCSEEECSSC-SSCCCEEEEE--T----TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS
T ss_pred ccccceeeccCccccccCC-cceEEEEEEc--C----CEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc
Confidence 5 6789999998 3 5677765 89999987653 35566666
Q ss_pred cceEE--EEec---cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccC--CCceEEEEEccCCC
Q 001202 393 SERVL--IFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ--NWPVQHVAASKDGM 465 (1124)
Q Consensus 393 ~~~v~--~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~--~~~I~~va~SpdG~ 465 (1124)
...|. .+++ ++.+++++.|+.+++|++..+.... .....+.+| ..+|.+++|+|+|+
T Consensus 285 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----------------~~~~~~~~~~~~~~v~~~~~s~~~~ 348 (366)
T 3k26_A 285 QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK----------------AKCTTLTHHKCGAAIRQTSFSRDSS 348 (366)
T ss_dssp SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG----------------CEEEEECCTTCCSCEEEEEECTTSS
T ss_pred CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc----------------ccceEEcccccCCceEEEEeCCCCC
Confidence 66663 3333 5788999999999999987654310 012244555 78999999999999
Q ss_pred EEEEEcCCCeE-EEEcCC
Q 001202 466 FLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 466 ~lAvag~dG~v-lwd~~s 482 (1124)
+|++|+.||.+ +||+.+
T Consensus 349 ~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 349 ILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEEEETTSEEEEEEC--
T ss_pred eEEEEeCCCEEEEEEecC
Confidence 99999999999 999853
No 67
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.93 E-value=1.7e-23 Score=249.57 Aligned_cols=296 Identities=11% Similarity=0.100 Sum_probs=225.8
Q ss_pred EEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecC-CeEEEEecCC
Q 001202 74 VWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDG 152 (1124)
Q Consensus 74 ~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~~llv~t~dg 152 (1124)
++++|+++|++++.||.|++||+..+... ..+.++...|.++...+ ..+++|+.||
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~-----------------------~~~~~h~~~V~~l~~~~~~~l~s~s~dg 183 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSINKKFL-----------------------LQLSGHDGGVWALKYAHGGILVSGSTDR 183 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEE-----------------------EEECCCSSCEEEEEECSTTEEEEEETTS
T ss_pred EEEECCCEEEEEcCCCcEEEEECCCCcEE-----------------------EEEeCCCcCEEEEEEcCCCEEEEEeCCC
Confidence 45667889999999999999998654211 11234455677776543 3788899999
Q ss_pred cEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcE
Q 001202 153 SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQL 232 (1124)
Q Consensus 153 ~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~ 232 (1124)
.|++|+.+ ...... .+..+...|.++.+++. ++|+.
T Consensus 184 ~i~vwd~~--~~~~~~----------------------------------~~~~h~~~v~~l~~~~~--------~~~~~ 219 (464)
T 3v7d_B 184 TVRVWDIK--KGCCTH----------------------------------VFEGHNSTVRCLDIVEY--------KNIKY 219 (464)
T ss_dssp CEEEEETT--TTEEEE----------------------------------EECCCSSCEEEEEEEES--------SSCEE
T ss_pred CEEEEECC--CCcEEE----------------------------------EECCCCCccEEEEEecC--------CCCCE
Confidence 99985543 221110 13356677877766532 67889
Q ss_pred EEEEecCCceEeeeccccc--------------------------eecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEc
Q 001202 233 MSCSVSKKGLKLAEFIKID--------------------------KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDL 285 (1124)
Q Consensus 233 ~~~~~~d~~i~~wd~~~~~--------------------------~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~ 285 (1124)
+++++.|+++++|+..+.. ...+|...+ ++ ++++.++++|+.||+|++||+
T Consensus 220 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~ 297 (464)
T 3v7d_B 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDV 297 (464)
T ss_dssp EEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEET
T ss_pred EEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEEC
Confidence 9999999999999987543 125677777 55 788999999999999999999
Q ss_pred CCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCC
Q 001202 286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK 365 (1124)
Q Consensus 286 ~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~ 365 (1124)
.+ ++.+..+. + |.++|.+++|+|+|..+++|+.||.|++||+.+++++.++.+| ...|.++++++
T Consensus 298 ~~-~~~~~~~~----~----~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~----- 362 (464)
T 3v7d_B 298 AQ-MKCLYILS----G----HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH-TALVGLLRLSD----- 362 (464)
T ss_dssp TT-TEEEEEEC----C----CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECS-----
T ss_pred CC-CcEEEEec----C----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCcEEEEEEcC-----
Confidence 87 77777776 5 9999999999999999999999999999999999999999988 78899999973
Q ss_pred cceEEEee---eEEEEeCCCCeEEEEe-cCCcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceee
Q 001202 366 YEPLMSGT---SMMQWDEYGYRLYAIE-EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (1124)
Q Consensus 366 ~~~l~sg~---~i~~W~~~~~~l~~~~-~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~ 440 (1124)
..+++|+ ++++|+..++...... ..+...+..+++ ++.+++++ |+.+++|++..++.
T Consensus 363 -~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~---------------- 424 (464)
T 3v7d_B 363 -KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL---------------- 424 (464)
T ss_dssp -SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE----------------
T ss_pred -CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE----------------
Confidence 5677766 8999999987655544 334455677777 67777777 89999999876654
Q ss_pred ecccce-eeccCCCceEEEEEccCCCEEEEEcCCCeE
Q 001202 441 HLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (1124)
Q Consensus 441 ~~~~p~-~~~~~~~~I~~va~SpdG~~lAvag~dG~v 476 (1124)
.. ...+|..+|.+++|+ ++..+++++.+|.+
T Consensus 425 ----~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~ 456 (464)
T 3v7d_B 425 ----VHANILKDADQIWSVNFK-GKTLVAAVEKDGQS 456 (464)
T ss_dssp ----EESCTTTTCSEEEEEEEE-TTEEEEEEEETTEE
T ss_pred ----EehhhccCCCcEEEEEec-CCEEEEEEEeCCeE
Confidence 22 245688899999998 45556666777776
No 68
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.93 E-value=1.6e-23 Score=235.24 Aligned_cols=271 Identities=15% Similarity=0.209 Sum_probs=204.5
Q ss_pred eEEEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCce
Q 001202 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~ 102 (1124)
.++++|++| +||++.|++|+|||.. .+..+..+... .+.+.+.+++|+|||++||+++.||.|++|++..++..
T Consensus 29 ~~l~WS~~~-~lAvg~D~tV~iWd~~-tg~~~~~~~~~----~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVALDNSVYLWSAS-SGDILQLLQME----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp BCEEECTTS-EEEEEETTEEEEEETT-TCCEEEEEECC----STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred eEEEECCCC-EEEEEeCCEEEEEECC-CCCEEEEEEec----CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE
Confidence 568999998 8899999999999996 55544433211 12356789999999999999999999999998754321
Q ss_pred eecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccc
Q 001202 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (1124)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i 182 (1124)
. .+.++...+.++..++..+++++.++.+..+..........
T Consensus 103 ~-----------------------~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~--------------- 144 (318)
T 4ggc_A 103 R-----------------------NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA--------------- 144 (318)
T ss_dssp E-----------------------EEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE---------------
T ss_pred E-----------------------EecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEE---------------
Confidence 1 12234456778888888899999999887653332211100
Q ss_pred cccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce-------ecC
Q 001202 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-------ELG 255 (1124)
Q Consensus 183 ~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~-------~~g 255 (1124)
....+...+.. +.+.++|+.+++++.|+++++||..+++. ...
T Consensus 145 --------------------~~~~~~~~~~~----------~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 194 (318)
T 4ggc_A 145 --------------------TLSGHSQEVCG----------LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194 (318)
T ss_dssp --------------------EEECCSSCEEE----------EEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECC
T ss_pred --------------------EEcCccCceEE----------EEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecc
Confidence 12234444544 44558899999999999999999876542 146
Q ss_pred CCCeE-EEEEccCCC---EEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE--CCC
Q 001202 256 SGDAV-CASIAPEQQ---ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW--KSR 329 (1124)
Q Consensus 256 h~~~v-~va~spdg~---lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs--~Dg 329 (1124)
|.+.+ +++++|++. .+++|+.+++|++|+... ........ +...|.++.|+|++..+++++ .|+
T Consensus 195 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~-~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~sg~~d~ 264 (318)
T 4ggc_A 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVD---------AHSQVCSILWSPHYKELISGHGFAQN 264 (318)
T ss_dssp CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT-CCEEEEEE---------CSSCEEEEEEETTTTEEEEEECTTTC
T ss_pred cCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc-cccccccc---------ceeeeeeeeecccccceEEEEEcCCC
Confidence 77788 999999765 345778899999999987 55554444 677899999999999887765 789
Q ss_pred cEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCC
Q 001202 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 382 (1124)
Q Consensus 330 ~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~ 382 (1124)
.|+|||+.+++++.++.+| .+.|++++|+|++ ..++||+ ++++|+...
T Consensus 265 ~i~iwd~~~~~~~~~l~gH-~~~V~~l~~spdg----~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 265 QLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDG----ATVASAAADETLRLWRCFE 315 (318)
T ss_dssp CEEEEETTTCCEEEEECCC-SSCEEEEEECTTS----SCEEEEETTTEEEEECCSC
T ss_pred EEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCC----CEEEEEecCCeEEEEECCC
Confidence 9999999999999999998 7899999999998 7788776 788887643
No 69
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.93 E-value=8.2e-23 Score=242.70 Aligned_cols=311 Identities=12% Similarity=0.131 Sum_probs=241.5
Q ss_pred ccccc-eEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCC
Q 001202 129 AEKGL-SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (1124)
Q Consensus 129 ~~~~~-~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~ 207 (1124)
.++.. .++|+.++++.+++|+.||.|++|+... ..... .+.+|
T Consensus 115 ~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~--~~~~~----------------------------------~~~~h 158 (445)
T 2ovr_B 115 KGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVT--GKCLR----------------------------------TLVGH 158 (445)
T ss_dssp ECSTTSCEEEEEEETTEEEEEETTSCEEEEETTT--CCEEE----------------------------------ECCCC
T ss_pred cccCCCcEEEEEEcCCEEEEEECCCcEEEEECCC--CcEEE----------------------------------EEcCC
Confidence 34433 3678999999999999999999865442 21110 13356
Q ss_pred CceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEE
Q 001202 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELY 283 (1124)
Q Consensus 208 ~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vw 283 (1124)
...|.++.++ +..+++++.|+++++||..+++.. .+|.+.+ +++++ +..+++|+.||+|++|
T Consensus 159 ~~~v~~~~~~------------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~w 224 (445)
T 2ovr_B 159 TGGVWSSQMR------------DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVW 224 (445)
T ss_dssp SSCEEEEEEE------------TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEE
T ss_pred CCCEEEEEec------------CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEE
Confidence 6777766553 568899999999999998877543 6899999 99886 5679999999999999
Q ss_pred EcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCC
Q 001202 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 363 (1124)
Q Consensus 284 d~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~ 363 (1124)
|+.+ ++.+..+. + |.++|.+++| +|..+++|+.||.|++||+.++.++.++.+| ...|.++.+ ++
T Consensus 225 d~~~-~~~~~~~~----~----~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~--~~- 289 (445)
T 2ovr_B 225 DIET-GQCLHVLM----G----HVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGH-TNRVYSLQF--DG- 289 (445)
T ss_dssp ESSS-CCEEEEEE----C----CSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCC-SSCEEEEEE--CS-
T ss_pred ECCC-CcEEEEEc----C----CcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCC-CCceEEEEE--CC-
Confidence 9988 77777776 5 9999999999 8899999999999999999999999999988 678999988 44
Q ss_pred CCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCcccee
Q 001202 364 CKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (1124)
Q Consensus 364 ~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w 439 (1124)
..+++|+ ++.+|+..++++.....+|...+..+.+ ++.+++++.|+.+++|++..+..
T Consensus 290 ---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--------------- 351 (445)
T 2ovr_B 290 ---IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC--------------- 351 (445)
T ss_dssp ---SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCE---------------
T ss_pred ---CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcE---------------
Confidence 6677766 8999999999999999999888888888 88999999999999999865543
Q ss_pred eecccceeec---cCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEE-Eec-CcCceeeeEEEEEEecCCEEEEEE
Q 001202 440 LHLNLPVSYI---SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFG-DITQEQKIQSKGLLWLGKIIVVCN 513 (1124)
Q Consensus 440 ~~~~~p~~~~---~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk-~f~-~~~~e~~~~v~gl~W~~~~liv~~ 513 (1124)
...+. .|..+|.+++|+ ++++++|+.||.+ +||+.+++.. .+. .......-.+.++.|.++..+++.
T Consensus 352 -----~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~ 424 (445)
T 2ovr_B 352 -----LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 424 (445)
T ss_dssp -----EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred -----EEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEE
Confidence 22333 378899999995 6899999999999 9999988743 221 111122245778999877554332
Q ss_pred -EecCCCeEEEEEeeCC
Q 001202 514 -YIDSSNTYELLFYPRY 529 (1124)
Q Consensus 514 -~~~~~~~~elrly~~~ 529 (1124)
..+......+.+|+.+
T Consensus 425 ~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 425 GSRNGTEETKLLVLDFD 441 (445)
T ss_dssp ECSSSSSCCEEEEEECC
T ss_pred cccCCCCccEEEEEECC
Confidence 2222234568888774
No 70
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.7e-23 Score=245.22 Aligned_cols=273 Identities=16% Similarity=0.173 Sum_probs=214.7
Q ss_pred eEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEE
Q 001202 134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (1124)
Q Consensus 134 ~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~ 213 (1124)
.+.++..+++.+++++.||.|++|+.+. ..... .....+...|.+
T Consensus 95 ~~~~~~~s~~~l~~~~~d~~v~lw~~~~--~~~~~---------------------------------~~~~~~~~~v~~ 139 (401)
T 4aez_A 95 YLNLLDWSNLNVVAVALERNVYVWNADS--GSVSA---------------------------------LAETDESTYVAS 139 (401)
T ss_dssp TCBCEEECTTSEEEEEETTEEEEEETTT--CCEEE---------------------------------EEECCTTCCEEE
T ss_pred eEEEEeecCCCEEEEECCCeEEEeeCCC--CcEeE---------------------------------eeecCCCCCEEE
Confidence 3556777788899999999998855432 22110 011235566766
Q ss_pred EEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCC
Q 001202 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA 289 (1124)
Q Consensus 214 i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~ 289 (1124)
+.|+ |||+++++++.++.+++|+..+++.. .+|...+ +++|+ +..+++|+.||+|++||+....
T Consensus 140 v~~s----------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~ 207 (401)
T 4aez_A 140 VKWS----------HDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIAN 207 (401)
T ss_dssp EEEC----------TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS
T ss_pred EEEC----------CCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCc
Confidence 6665 78999999999999999998876543 6899999 99994 5799999999999999998645
Q ss_pred ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceE
Q 001202 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (1124)
Q Consensus 290 ~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l 369 (1124)
.....+. + |.+.|.+++|+|||..|++|+.||.|++||+.++....++.+| ...|.+++|+|++. ..+
T Consensus 208 ~~~~~~~----~----~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~---~ll 275 (401)
T 4aez_A 208 HQIGTLQ----G----HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH-NAAVKAVAWCPWQS---NLL 275 (401)
T ss_dssp CEEEEEE----C----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCC-SSCCCEEEECTTST---TEE
T ss_pred ceeeEEc----C----CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCC-cceEEEEEECCCCC---CEE
Confidence 6666666 5 9999999999999999999999999999999999999999887 78899999999762 455
Q ss_pred EEe-----eeEEEEeCCCCeEEEEecCCcceE--EEEec-cceEEe--eccCCceeeeEeeecCCeEEEeecCCCcccee
Q 001202 370 MSG-----TSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLN--RGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (1124)
Q Consensus 370 ~sg-----~~i~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s--~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w 439 (1124)
++| ..+.+|+..++++...... ...+ +.+++ ++.+++ |+.|+.+++|++..+...
T Consensus 276 ~~~~gs~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~-------------- 340 (401)
T 4aez_A 276 ATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-------------- 340 (401)
T ss_dssp EEECCTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE--------------
T ss_pred EEecCCCCCEEEEEECCCCCEEEEEeC-CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce--------------
Confidence 553 2899999999888777653 4556 44555 777777 558999999997654331
Q ss_pred eecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 440 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 440 ~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
....+.+|..+|.+++|+|||++|++|+.||.+ +|++.+++
T Consensus 341 ----~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 341 ----KQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp ----EEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred ----eEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 122356789999999999999999999999999 99998875
No 71
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.93 E-value=4.8e-25 Score=255.08 Aligned_cols=241 Identities=11% Similarity=0.144 Sum_probs=174.3
Q ss_pred hcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEe--ecCCe
Q 001202 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SDNKH 144 (1124)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~d~~~ 144 (1124)
.+.+.+++|+|||++||+++.||.|++|++..+... ....+.++...|.+++ ++++.
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~---------------------~~~~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWK---------------------HARTFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEE---------------------ECCCBCCCSSCEEEEEECTTTCC
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceE---------------------EEEEEecCCceEEEEEEeCCCCE
Confidence 467889999999999999999999999999854200 0011223344455544 56678
Q ss_pred EEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEE
Q 001202 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1124)
Q Consensus 145 llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~ 224 (1124)
+++++.||.+++ |+........ .......+...|.++.|+
T Consensus 70 l~s~s~d~~v~v--wd~~~~~~~~-------------------------------~~~~~~~~~~~v~~~~~~------- 109 (377)
T 3dwl_C 70 IVTCSQDRNAYV--YEKRPDGTWK-------------------------------QTLVLLRLNRAATFVRWS------- 109 (377)
T ss_dssp EEEEETTSSEEE--C------CCC-------------------------------CEEECCCCSSCEEEEECC-------
T ss_pred EEEEeCCCeEEE--EEcCCCCcee-------------------------------eeeEecccCCceEEEEEC-------
Confidence 999999999988 4433222000 001233566778777666
Q ss_pred EEecCCcEEEEEecCCceEeeeccccce------ecC-CCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCC-------
Q 001202 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK------ELG-SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA------- 289 (1124)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~wd~~~~~~------~~g-h~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~------- 289 (1124)
|||+.+++++.|+++++|+..+.+. +.+ |...+ +++|+|++++||+|+.||+|++||+....
T Consensus 110 ---~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 186 (377)
T 3dwl_C 110 ---PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEA 186 (377)
T ss_dssp ---TTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCS
T ss_pred ---CCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccc
Confidence 7888899999999999999876642 245 89999 99999999999999999999999986311
Q ss_pred ----c--eeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCee----eEEeccCCcCceeeeEEc
Q 001202 290 ----S--LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL----MSTIRQISLSSISSPIVK 359 (1124)
Q Consensus 290 ----~--~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l----~~tl~~h~~~~V~s~~~s 359 (1124)
. ...... ... +|.++|.+++|+|||++||+|+.||+|++||+.++.. +.++.+| ...|.+++|+
T Consensus 187 ~~~~~~~~~~~~~-~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~s 260 (377)
T 3dwl_C 187 SVWGSRLPFNTVC-AEY----PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS-QLPLRSLLWA 260 (377)
T ss_dssp CSSCSCCCEEEEE-ECC----CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS-SSCEEEEEEE
T ss_pred cccccccchhhhh-hcc----cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC-CCceEEEEEc
Confidence 0 011111 111 3999999999999999999999999999999998876 7788887 6789999999
Q ss_pred CCCCCCcceEEEee--eEEEEeCC
Q 001202 360 PNQDCKYEPLMSGT--SMMQWDEY 381 (1124)
Q Consensus 360 p~~~~~~~~l~sg~--~i~~W~~~ 381 (1124)
|++ ..+++|+ ..++|...
T Consensus 261 ~~~----~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 261 NES----AIVAAGYNYSPILLQGN 280 (377)
T ss_dssp ETT----EEEEEESSSSEEEECCC
T ss_pred CCC----CEEEEEcCCcEEEEEeC
Confidence 998 8888876 55577654
No 72
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.93 E-value=1.2e-23 Score=241.84 Aligned_cols=234 Identities=14% Similarity=0.103 Sum_probs=192.0
Q ss_pred EEEEecCCcEEEEEecCCceEeeeccccc--e---ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEe
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKID--K---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS 296 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~--~---~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~ 296 (1124)
.++++|||+++++++.++.+++|+..+.+ . +.+|...+ +++|+|++++|++|+.||+|++||+.+ ++......
T Consensus 13 ~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~ 91 (372)
T 1k8k_C 13 CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG-RTWKPTLV 91 (372)
T ss_dssp EEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET-TEEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC-CeeeeeEE
Confidence 44555889999999999999999987764 2 26899999 999999999999999999999999977 55444433
Q ss_pred eccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCe---eeEEeccCCcCceeeeEEcCCCCCCcceEEEee
Q 001202 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1124)
Q Consensus 297 ~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~---l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~ 373 (1124)
.. + |.+.|.+++|+|||++|++|+.||.|++|++.++. ....+...+...|.+++|+|++ ..+++|+
T Consensus 92 ~~--~----~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~ 161 (372)
T 1k8k_C 92 IL--R----INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS----VLLAAGS 161 (372)
T ss_dssp CC--C----CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS----SEEEEEE
T ss_pred ee--c----CCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC----CEEEEEc
Confidence 11 3 88999999999999999999999999999998765 2344433337889999999988 7888776
Q ss_pred ---eEEEEeC------------------CCCeEEEEecCCcceEEEEe--c-cceEEeeccCCceeeeEeeecCCeEEEe
Q 001202 374 ---SMMQWDE------------------YGYRLYAIEEGSSERVLIFS--F-GKCCLNRGVSGMTYARQVIYGEDRLLVV 429 (1124)
Q Consensus 374 ---~i~~W~~------------------~~~~l~~~~~~~~~~v~~~s--~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~ 429 (1124)
.+.+|+. ..+++.....+|...+..+. + ++.+++++.|+.+++|++..+..
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----- 236 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA----- 236 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE-----
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----
Confidence 8999995 36778888888888885544 4 77899999999999999876554
Q ss_pred ecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC--CcEEEe
Q 001202 430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ--KKWRVF 488 (1124)
Q Consensus 430 ~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s--g~wk~f 488 (1124)
...+..|..+|.+++|+|+|+++++| .||.+ +|++.+ +.|...
T Consensus 237 ---------------~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~ 282 (372)
T 1k8k_C 237 ---------------VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFG 282 (372)
T ss_dssp ---------------EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEEC
T ss_pred ---------------eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEe
Confidence 34566788899999999999999888 78888 999998 887654
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3e-23 Score=237.44 Aligned_cols=290 Identities=12% Similarity=0.099 Sum_probs=212.5
Q ss_pred ecccccceEEEEee--cCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeeccc
Q 001202 127 PFAEKGLSVSNIVS--DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHK 204 (1124)
Q Consensus 127 ~~~~~~~~v~~i~~--d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~ 204 (1124)
.+.++...|++++. +++.+++++.||.|++|+... ..... .+
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~~~~~----------------------------------~~ 70 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN--GERLG----------------------------------TL 70 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT--CCEEE----------------------------------EE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--chhhh----------------------------------hh
Confidence 34556667777654 667899999999998854432 21110 13
Q ss_pred CCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee--cCCCCeE-EEEEccCCCEEEEEecC----
Q 001202 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRR---- 277 (1124)
Q Consensus 205 ~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~--~gh~~~v-~va~spdg~lLAsGs~D---- 277 (1124)
..+...|.++.|+ +||+.+++++.|+++++||..+++.. ..|...+ +++|+|+++++++++.+
T Consensus 71 ~~h~~~v~~~~~~----------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~ 140 (369)
T 3zwl_B 71 DGHTGTIWSIDVD----------CFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKN 140 (369)
T ss_dssp CCCSSCEEEEEEC----------TTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTB
T ss_pred hhcCCcEEEEEEc----------CCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCC
Confidence 3566677766665 78899999999999999998877543 3367777 99999999999999999
Q ss_pred -CeEEEEEcCCCCc----------eeEEEeeccCCCCCCCCC--CeEEEEECCCCCEEEEEECCCcEEEEEcCC-CeeeE
Q 001202 278 -GVVELYDLAESAS----------LIRTVSLYDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMS 343 (1124)
Q Consensus 278 -gtV~vwd~~~~~~----------~~~~l~~~~~g~~~~h~g--~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~-~~l~~ 343 (1124)
|.|++|++..... ....+. .|.+ .|.+++|+|||+.|++|+.||.|++||+.+ +....
T Consensus 141 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 212 (369)
T 3zwl_B 141 PGSINIYEIERDSATHELTKVSEEPIHKII--------THEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVD 212 (369)
T ss_dssp CCEEEEEEEEECTTTCCEEEECSSCSEEEE--------CCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEE
T ss_pred CCEEEEEEecCCccceeecccccceeeecc--------CCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEE
Confidence 9999999976321 122222 2555 899999999999999999999999999998 78888
Q ss_pred EeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceE--EEEec-cceEEeeccCCceeee
Q 001202 344 TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYAR 417 (1124)
Q Consensus 344 tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w 417 (1124)
.+..| ...|.+++|+|++ ..+++++ .+.+|+..++++..... +...+ ..+++ ++.+++++.++...++
T Consensus 213 ~~~~~-~~~v~~~~~~~~~----~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (369)
T 3zwl_B 213 SIDLH-EKSISDMQFSPDL----TYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVT 286 (369)
T ss_dssp EEECC-SSCEEEEEECTTS----SEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-----
T ss_pred EEecC-CCceeEEEECCCC----CEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEE
Confidence 88887 7889999999998 7788776 89999999988877765 34455 55555 7888888888744333
Q ss_pred EeeecCC--eEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 418 QVIYGED--RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 418 ~l~~~~~--~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
....... .+.++.... .+....+.+|..+|.+++|+|||++|++|+.||.+ +|++.++.
T Consensus 287 ~~~~~~~~~~i~~~d~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 287 TTSANEGKFEARFYHKIF--------EEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp --------CEEEEEETTT--------CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred EEecCCCcceeEEEecCC--------CcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 3222111 111111100 01234567899999999999999999999999999 99997754
No 74
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.93 E-value=2e-23 Score=262.88 Aligned_cols=273 Identities=14% Similarity=0.185 Sum_probs=209.6
Q ss_pred cCCCCeE-EEEEccCC-CEEEEEecCCeEEEEEcCCCC----ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC
Q 001202 254 LGSGDAV-CASIAPEQ-QILAVGTRRGVVELYDLAESA----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg-~lLAsGs~DgtV~vwd~~~~~----~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~ 327 (1124)
.+|.+.| |++++|++ .+||+|+.||+|++|++.... ...+.+. | |.+.|.+++|+|||++|++|+.
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~----~----h~~~v~~v~~s~~g~~l~sgs~ 450 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT----G----HSHFVEDVVLSSDGQFALSGSW 450 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE----C----CSSCEEEEEECTTSSEEEEEET
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec----C----CCCcEEEEEECCCCCEEEEEeC
Confidence 6899999 99999874 799999999999999997632 2234455 5 9999999999999999999999
Q ss_pred CCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEe---cCCcceEEEEec
Q 001202 328 SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE---EGSSERVLIFSF 401 (1124)
Q Consensus 328 Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~---~~~~~~v~~~s~ 401 (1124)
||+|+|||+.++.+..++.+| ...|.+++|+|++ ..+++|+ ++++|+..+....... .+|...|.++.+
T Consensus 451 Dg~v~vwd~~~~~~~~~~~~h-~~~v~~~~~s~~~----~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 525 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRRFVGH-TKDVLSVAFSLDN----RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRF 525 (694)
T ss_dssp TSEEEEEETTTTEEEEEEECC-SSCEEEEEECTTS----SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEE
T ss_pred CCcEEEEECCCCcceeEEeCC-CCCEEEEEEeCCC----CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEE
Confidence 999999999999999999998 7889999999998 8888887 8999998876655543 356777755444
Q ss_pred ---c--ceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE
Q 001202 402 ---G--KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (1124)
Q Consensus 402 ---~--k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v 476 (1124)
+ ..+++++.|+++++|++..+.. ...+.+|..+|.+++|||||++|++||.||.+
T Consensus 526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~--------------------~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i 585 (694)
T 3dm0_A 526 SPNTLQPTIVSASWDKTVKVWNLSNCKL--------------------RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVV 585 (694)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTCCE--------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSBC
T ss_pred eCCCCcceEEEEeCCCeEEEEECCCCcE--------------------EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence 2 4689999999999999765433 45667899999999999999999999999999
Q ss_pred -EEEcCCCcEEEecCcCceeeeEEEEEEecCCE-EEEEEEecCCCeEEEEEeeCCCCCCcceEEEeec------------
Q 001202 477 -LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKI-IVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSL------------ 542 (1124)
Q Consensus 477 -lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~-liv~~~~~~~~~~elrly~~~~ld~~~~l~~~~l------------ 542 (1124)
+||+.+++.. ..-. . .-.+..++|.++. +++++. ++ .|++|+... ...+.....
T Consensus 586 ~iwd~~~~~~~-~~~~-~--~~~v~~~~~sp~~~~l~~~~---~~--~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~ 653 (694)
T 3dm0_A 586 LLWDLAEGKKL-YSLE-A--NSVIHALCFSPNRYWLCAAT---EH--GIKIWDLES---KSIVEDLKVDLKAEAEKADNS 653 (694)
T ss_dssp EEEETTTTEEE-ECCB-C--SSCEEEEEECSSSSEEEEEE---TT--EEEEEETTT---TEEEEEECCCCC---------
T ss_pred EEEECCCCceE-EEec-C--CCcEEEEEEcCCCcEEEEEc---CC--CEEEEECCC---CCChhhhcccccccccccccc
Confidence 9999988642 2111 1 1236678887553 333332 22 599998741 111111110
Q ss_pred ----------CCccEEEEeeCCEEEEEEcCCeEEEEEEE
Q 001202 543 ----------LAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (1124)
Q Consensus 543 ----------~s~~l~l~~~~~~llv~~~d~~i~l~~~~ 571 (1124)
....+..++.+.+|+.++.|+.|++|++.
T Consensus 654 ~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 654 GPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 00124557788889999999999999874
No 75
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.3e-23 Score=230.96 Aligned_cols=275 Identities=15% Similarity=0.150 Sum_probs=207.8
Q ss_pred CCceE--EEEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEe
Q 001202 20 SSQQI--IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (1124)
Q Consensus 20 ~~~~i--v~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v 96 (1124)
+..+| ++| |++.+||+++ ++.|+||+.. .......... +.+.+.+++|+||++.|++++.+|.+++|++
T Consensus 17 h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 88 (313)
T 3odt_A 17 HDQDVRDVVA-VDDSKVASVSRDGTVRLWSKD-DQWLGTVVYT------GQGFLNSVCYDSEKELLLFGGKDTMINGVPL 88 (313)
T ss_dssp CSSCEEEEEE-EETTEEEEEETTSEEEEEEES-SSEEEEEEEE------CSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred CCCCcEEEEe-cCCCEEEEEEcCCcEEEEECC-CCEEEEEeec------CCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence 44444 677 8888888876 5679999995 4443333321 3567889999999999999999999999998
Q ss_pred eecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCc
Q 001202 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (1124)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~ 176 (1124)
....... ....+.++...|.++..+++.+++++.||.+++|+ .. ...
T Consensus 89 ~~~~~~~--------------------~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~--~~~--------- 135 (313)
T 3odt_A 89 FATSGED--------------------PLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EG--SLV--------- 135 (313)
T ss_dssp TCCTTSC--------------------C-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TT--EEE---------
T ss_pred eecCCCC--------------------cccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CC--cEE---------
Confidence 6432100 00112344557888888899999999999998854 11 111
Q ss_pred cccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee-cC
Q 001202 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-LG 255 (1124)
Q Consensus 177 ~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~-~g 255 (1124)
.....+...+.++.+++ ++++.+++++.++.+++||....... .+
T Consensus 136 -------------------------~~~~~~~~~v~~~~~~~---------~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 181 (313)
T 3odt_A 136 -------------------------YNLQAHNASVWDAKVVS---------FSENKFLTASADKTIKLWQNDKVIKTFSG 181 (313)
T ss_dssp -------------------------EEEECCSSCEEEEEEEE---------TTTTEEEEEETTSCEEEEETTEEEEEECS
T ss_pred -------------------------EecccCCCceeEEEEcc---------CCCCEEEEEECCCCEEEEecCceEEEEec
Confidence 01224455666555442 38889999999999999995443222 34
Q ss_pred -CCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEE
Q 001202 256 -SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (1124)
Q Consensus 256 -h~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~v 333 (1124)
|...+ +++|+|++. +++|+.||.|++||+.+ ++.+..+. + |.++|.+++|+|+| .|++|+.||.|++
T Consensus 182 ~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~-~~~~~~~~----~----~~~~i~~~~~~~~~-~l~~~~~dg~v~i 250 (313)
T 3odt_A 182 IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT-GDVLRTYE----G----HESFVYCIKLLPNG-DIVSCGEDRTVRI 250 (313)
T ss_dssp SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT-CCEEEEEE----C----CSSCEEEEEECTTS-CEEEEETTSEEEE
T ss_pred cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc-hhhhhhhh----c----CCceEEEEEEecCC-CEEEEecCCEEEE
Confidence 88888 999999998 99999999999999988 77777776 5 99999999999999 6999999999999
Q ss_pred EEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee--eEEEEeCCCCeE
Q 001202 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRL 385 (1124)
Q Consensus 334 Wdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l 385 (1124)
||+.++++..++..| ...|.+++|+|++ ..++++. .+.+|+.+++++
T Consensus 251 wd~~~~~~~~~~~~~-~~~i~~~~~~~~~----~~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 251 WSKENGSLKQVITLP-AISIWSVDCMSNG----DIIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp ECTTTCCEEEEEECS-SSCEEEEEECTTS----CEEEEETTSCEEEEESCGGGC
T ss_pred EECCCCceeEEEecc-CceEEEEEEccCC----CEEEEeCCCcEEEEeCCCCce
Confidence 999999999999887 6789999999987 5443332 788888876554
No 76
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.93 E-value=1.3e-23 Score=244.19 Aligned_cols=309 Identities=11% Similarity=0.039 Sum_probs=211.2
Q ss_pred hhcceeEEEEec-CCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEee---c
Q 001202 66 REGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS---D 141 (1124)
Q Consensus 66 ~~G~~~~v~wSP-Dg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~---d 141 (1124)
+.+.+.+++|+| |+++||+++.||.|++|++..+...... ..............++...|.++.. +
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 111 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY----------TCKAVCSIGRDHPDVHRYSVETVQWYPHD 111 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE----------EECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE----------eccccccccccccccCCCcEEEEEEccCC
Confidence 457789999999 9999999999999999999865421110 0000000000112234556777664 4
Q ss_pred CCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcc
Q 001202 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (1124)
Q Consensus 142 ~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~ 221 (1124)
+..+++++.||.+++|+.+.. .... .......+..+.+++..
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~--~~~~-----------------------------------~~~~~~~~~~~~~~~~~- 153 (408)
T 4a11_B 112 TGMFTSSSFDKTLKVWDTNTL--QTAD-----------------------------------VFNFEETVYSHHMSPVS- 153 (408)
T ss_dssp TTCEEEEETTSEEEEEETTTT--EEEE-----------------------------------EEECSSCEEEEEECSSC-
T ss_pred CcEEEEEeCCCeEEEeeCCCC--ccce-----------------------------------eccCCCceeeeEeecCC-
Confidence 457888889999998654432 1110 01123456666666542
Q ss_pred eEEEEecCCcEEEEEecCCceEeeeccccce---ecCCCCeE-EEEEccCCC-EEEEEecCCeEEEEEcCCCCceeEEEe
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVS 296 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~---~~gh~~~v-~va~spdg~-lLAsGs~DgtV~vwd~~~~~~~~~~l~ 296 (1124)
+++.+++++..++.+++||..+++. ..+|.+.+ +++|+|+++ ++++|+.||.|++||+.........+.
T Consensus 154 ------~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~ 227 (408)
T 4a11_B 154 ------TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD 227 (408)
T ss_dssp ------SSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECC
T ss_pred ------CCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccc
Confidence 5777999999999999999877653 36799999 999999998 699999999999999987444455442
Q ss_pred eccC-------CCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceE
Q 001202 297 LYDW-------GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (1124)
Q Consensus 297 ~~~~-------g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l 369 (1124)
.... ....+|.+.|.+++|+|||.+|++|+.||.|++||+.++.....+.++... ... ..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---------~~~---~~- 294 (408)
T 4a11_B 228 QHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCN---------NSK---KG- 294 (408)
T ss_dssp TTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCC---------CCS---SC-
T ss_pred ccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccc---------ccc---cc-
Confidence 1110 011358999999999999999999999999999999987654443332000 000 00
Q ss_pred EEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeec
Q 001202 370 MSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (1124)
Q Consensus 370 ~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~ 449 (1124)
. ...........++.++.++.+++|++..+.. ...+.
T Consensus 295 ----~-------------------~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--------------------~~~~~ 331 (408)
T 4a11_B 295 ----L-------------------KFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ--------------------ITMLK 331 (408)
T ss_dssp ----C-------------------CCEECCSSSSCEEEEEETTEEEEEETTTCCE--------------------EEEEC
T ss_pred ----c-------------------eeEEecCCCceEEEEecCCEEEEEECcCCcc--------------------eeeec
Confidence 0 0001111133445566788999999765543 45667
Q ss_pred cCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 450 ~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
+|..+|.+++|+|+|++|++|+.||.+ +||+.+++
T Consensus 332 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 332 GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 899999999999999999999999999 99998865
No 77
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.6e-24 Score=250.77 Aligned_cols=236 Identities=16% Similarity=0.140 Sum_probs=182.6
Q ss_pred eEEEEecCCcEEEEEecCCceEeeecccc--ce---ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCc---ee
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKI--DK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESAS---LI 292 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~--~~---~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~---~~ 292 (1124)
..++++|||+++++++.|+++++|+..++ +. +.+|.+.| +++|+|++++||+|+.||+|++||+.+ +. ..
T Consensus 15 ~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~-~~~~~~~ 93 (377)
T 3dwl_C 15 YEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP-DGTWKQT 93 (377)
T ss_dssp SCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-------CCCCE
T ss_pred EEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC-CCceeee
Confidence 34556689999999999999999998866 32 26899999 999999999999999999999999987 44 23
Q ss_pred EEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCe---eeEEeccCCcCceeeeEEcCCCCCCcceE
Q 001202 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (1124)
Q Consensus 293 ~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~---l~~tl~~h~~~~V~s~~~sp~~~~~~~~l 369 (1124)
..+. + |.+.|.+++|+|||+.|++|+.|+.|++||+.++. +...+.+.+...|.+++|+|++ ..+
T Consensus 94 ~~~~----~----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l 161 (377)
T 3dwl_C 94 LVLL----R----LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN----VLL 161 (377)
T ss_dssp EECC----C----CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS----SEE
T ss_pred eEec----c----cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC----CEE
Confidence 3333 3 99999999999999999999999999999998876 4778887237899999999998 788
Q ss_pred EEee---eEEEEeCC------------------CCeEEEEecCCcceEEE--Eec-cceEEeeccCCceeeeEeeecCCe
Q 001202 370 MSGT---SMMQWDEY------------------GYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDR 425 (1124)
Q Consensus 370 ~sg~---~i~~W~~~------------------~~~l~~~~~~~~~~v~~--~s~-~k~~~s~s~d~~v~~w~l~~~~~~ 425 (1124)
++|+ ++++|+.. .+++.... +|...|.. +++ ++.+++++.|+++++|++..+...
T Consensus 162 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 240 (377)
T 3dwl_C 162 AAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP 240 (377)
T ss_dssp EEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC
T ss_pred EEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc
Confidence 8876 89999985 24555555 78888854 455 788999999999999998776541
Q ss_pred EEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeEEEEcCCCcEEE
Q 001202 426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRV 487 (1124)
Q Consensus 426 l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~vlwd~~sg~wk~ 487 (1124)
. .....+.+|..+|.+++|+|||++|++|+.++.++|+...+.|+.
T Consensus 241 ~----------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~ 286 (377)
T 3dwl_C 241 P----------------RALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAH 286 (377)
T ss_dssp E----------------EECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CC
T ss_pred c----------------eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEE
Confidence 0 012456689999999999999999999999888888877655543
No 78
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.93 E-value=1.6e-23 Score=243.55 Aligned_cols=311 Identities=14% Similarity=0.041 Sum_probs=220.3
Q ss_pred ecccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCC
Q 001202 127 PFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP 206 (1124)
Q Consensus 127 ~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~ 206 (1124)
.+.++...|.+++.+++.+++++.||.|++|+.+....... + .....+..
T Consensus 11 ~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~----------------~--------------~~~~~~~~ 60 (397)
T 1sq9_A 11 AGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENP----------------K--------------DKSYSHFV 60 (397)
T ss_dssp ESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCG----------------G--------------GGEEEEEC
T ss_pred hhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccC----------------C--------------CcceEEec
Confidence 45667788999998888999999999999865543321000 0 00012235
Q ss_pred CCceEEEEEecCCcceEEEEecCC---cEEEEEecCCceEeeeccccce-----e---cCC-----CCeE-EEEEc----
Q 001202 207 ISSAIIWLELCLPMRLLFVLYSNG---QLMSCSVSKKGLKLAEFIKIDK-----E---LGS-----GDAV-CASIA---- 265 (1124)
Q Consensus 207 ~~~~I~~i~~s~~~~~~~~~s~dG---~~~~~~~~d~~i~~wd~~~~~~-----~---~gh-----~~~v-~va~s---- 265 (1124)
+...|.++.|+|+. ..+| +++++++.|+++++|+..+.+. . .+| ...+ +++|+
T Consensus 61 h~~~v~~~~~~~~~------~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 134 (397)
T 1sq9_A 61 HKSGLHHVDVLQAI------ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 134 (397)
T ss_dssp CTTCEEEEEEEEEE------ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-
T ss_pred CCCcEEEEEEeccc------ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccC
Confidence 66777776666321 1238 8999999999999999876653 2 567 4778 99999
Q ss_pred cCCCE-EEEEecCCeEEEEEcCCC-----CceeE-----EEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEE
Q 001202 266 PEQQI-LAVGTRRGVVELYDLAES-----ASLIR-----TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (1124)
Q Consensus 266 pdg~l-LAsGs~DgtV~vwd~~~~-----~~~~~-----~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vW 334 (1124)
|++++ |++|+.||.|++||+... +..+. .+.... .....|.+.|.+++|+|+| .+++|+.||.|++|
T Consensus 135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~ 212 (397)
T 1sq9_A 135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV-ESPMTPSQFATSVDISERG-LIATGFNNGTVQIS 212 (397)
T ss_dssp ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEE-CCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeee-ccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence 99999 999999999999999761 12222 332100 0012378899999999999 99999999999999
Q ss_pred EcCCCeeeEEecc---CC--cCceeeeEEcCCCCCCcceEEEee------eEEEEeCCCCeEEEEecC------------
Q 001202 335 SVSGCRLMSTIRQ---IS--LSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEG------------ 391 (1124)
Q Consensus 335 dv~~~~l~~tl~~---h~--~~~V~s~~~sp~~~~~~~~l~sg~------~i~~W~~~~~~l~~~~~~------------ 391 (1124)
|+.+++.+.++.. |. ...|.+++|+|++ ..+++|+ .+.+|+..+++......+
T Consensus 213 d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~----~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 288 (397)
T 1sq9_A 213 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG----SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF 288 (397)
T ss_dssp ETTTTEEEEEEECCC---CCCCCEEEEEECSST----TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCB
T ss_pred ECCCCceeEEEeccccccccCCccceEEECCCC----CEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccc
Confidence 9999999998887 41 4679999999998 7777654 578999999998888877
Q ss_pred -CcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEee------cCCCccceeeecccceeeccCCCceEEEEEc
Q 001202 392 -SSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQ------SEDTDELKILHLNLPVSYISQNWPVQHVAAS 461 (1124)
Q Consensus 392 -~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~------~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S 461 (1124)
|...|..+.+ ++.+++++.|+.+++|++..+.. +.... +++.+... . .......|..+|.+++|+
T Consensus 289 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~---g-~~~~~~~~~~~v~~~~~~ 363 (397)
T 1sq9_A 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER-ITTLNMHCDDIEIEEDILA---V-DEHGDSLAEPGVFDVKFL 363 (397)
T ss_dssp SBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-EEEEECCGGGCSSGGGCCC---B-CTTSCBCSSCCEEEEEEE
T ss_pred ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce-eEEEecccCcccchhhhhc---c-ccccccccCCceeEEEec
Confidence 8888855544 78899999999999999865533 11111 00000000 0 000112248999999999
Q ss_pred cCC----------CEEEEEcCCCeE-EEEcCCCc
Q 001202 462 KDG----------MFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 462 pdG----------~~lAvag~dG~v-lwd~~sg~ 484 (1124)
|+| ++|++|+.||.+ +|++.+|+
T Consensus 364 ~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 364 KKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 999 799999999999 99998864
No 79
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.93 E-value=1.3e-23 Score=248.58 Aligned_cols=349 Identities=12% Similarity=0.076 Sum_probs=212.1
Q ss_pred HhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeeccccc-----------
Q 001202 64 VQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKG----------- 132 (1124)
Q Consensus 64 l~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 132 (1124)
+.+.+.+.+++|+|||++||+++.||.|++|++..+...... .... +. ....+.++.
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~--~~~~--------~~--~~~~~~~h~~~~~~~~~~~~ 92 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSH--SRGE--------YN--VYSTFQSHEPEFDYLKSLEI 92 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CC--CCCC--------EE--EEEEEECCCCEEEGGGTEEE
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc--cccc--------ee--Eecccccccccccccccccc
Confidence 445688999999999999999999999999999865421000 0000 00 000111222
Q ss_pred -ceEEE--EeecC--CeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCC-----Ceeec
Q 001202 133 -LSVSN--IVSDN--KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSG-----AFVSD 202 (1124)
Q Consensus 133 -~~v~~--i~~d~--~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~-----~~~~~ 202 (1124)
..|.+ +.+++ ..+++++.||.|++|+.+........... ..+...+..........+......+ .....
T Consensus 93 ~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
T 3dw8_B 93 EEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNL-KEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI 171 (447)
T ss_dssp CCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSC-C--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred cCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecc-cCccccccCcccccceEeccccchheeeeccceEE
Confidence 34544 44555 56899999999998655432111000000 0000000000000000000000000 00001
Q ss_pred ccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccc-e----------ecCCCCeE-EEEEccCC-C
Q 001202 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID-K----------ELGSGDAV-CASIAPEQ-Q 269 (1124)
Q Consensus 203 ~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~-~----------~~gh~~~v-~va~spdg-~ 269 (1124)
....|...|. .++++|||+.++++ .|+++++||..+.. . ..+|.+.+ +++|+|++ .
T Consensus 172 ~~~~h~~~v~----------~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 240 (447)
T 3dw8_B 172 FANAHTYHIN----------SISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN 240 (447)
T ss_dssp ECSCCSSCCC----------EEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT
T ss_pred eccCCCcceE----------EEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc
Confidence 1234444554 45555889999998 89999999987432 2 24789999 99999998 9
Q ss_pred EEEEEecCCeEEEEEcCCCCce----eEEEeeccCCCCCCCCC------------CeEEEEECCCCCEEEEEECCCcEEE
Q 001202 270 ILAVGTRRGVVELYDLAESASL----IRTVSLYDWGYSMDDTG------------PVSCIAWTPDNSAFAVGWKSRGLTV 333 (1124)
Q Consensus 270 lLAsGs~DgtV~vwd~~~~~~~----~~~l~~~~~g~~~~h~g------------~V~~lawSPDG~~Lasgs~Dg~I~v 333 (1124)
+||+|+.||+|++||+.+ +.. ...+. + |.+ +|.+++|+|||++|++|+. +.|++
T Consensus 241 ~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~i 310 (447)
T 3dw8_B 241 TFVYSSSKGTIRLCDMRA-SALCDRHSKLFE----E----PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKV 310 (447)
T ss_dssp EEEEEETTSCEEEEETTT-CSSSCTTCEEEC----C----C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEE
T ss_pred EEEEEeCCCeEEEEECcC-CccccceeeEec----c----CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEE
Confidence 999999999999999987 554 55555 3 444 8999999999999999999 99999
Q ss_pred EEcCC-CeeeEEeccCCcCc---------------eeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcc
Q 001202 334 WSVSG-CRLMSTIRQISLSS---------------ISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE 394 (1124)
Q Consensus 334 Wdv~~-~~l~~tl~~h~~~~---------------V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~ 394 (1124)
||+.. ++++.++.+| ... +..++|+|++ ..+++|+ .+++|+..+++.+... ++..
T Consensus 311 wd~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~i~~~~~~~~s~~~----~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~ 384 (447)
T 3dw8_B 311 WDLNMENRPVETYQVH-EYLRSKLCSLYENDCIFDKFECCWNGSD----SVVMTGSYNNFFRMFDRNTKRDITLE-ASRE 384 (447)
T ss_dssp EETTCCSSCSCCEESC-GGGTTTHHHHHHTSGGGCCCCEEECTTS----SEEEEECSTTEEEEEETTTCCEEEEE-CCST
T ss_pred EeCCCCccccceeecc-ccccccccccccccccccceEEEECCCC----CEEEEeccCCEEEEEEcCCCcceeee-eccc
Confidence 99986 8888888877 221 2348999998 7788876 8999999988776432 2221
Q ss_pred eEE--EEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcC
Q 001202 395 RVL--IFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (1124)
Q Consensus 395 ~v~--~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~ 472 (1124)
... .....+.+..++.. .... .......++.+|.+++|+|+|++||+|+.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~---------~~~~-------------------~~~~~~~~~~~i~~~~~~p~~~~la~~~~ 436 (447)
T 3dw8_B 385 NNKPRTVLKPRKVCASGKR---------KKDE-------------------ISVDSLDFNKKILHTAWHPKENIIAVATT 436 (447)
T ss_dssp TCCTTCBCCCCCEECSSCC---------CTTC-------------------EEGGGCCTTSCCCEEEECSSSSEEEEECS
T ss_pred ccccccccCCccccccCCc---------cccc-------------------ccccccccCCceeEEEECCCCCEEEEEec
Confidence 110 00001111111100 0000 01112235567999999999999999999
Q ss_pred CCeEEEEc
Q 001202 473 HGLILYDI 480 (1124)
Q Consensus 473 dG~vlwd~ 480 (1124)
++..+|+.
T Consensus 437 ~~~~~~~~ 444 (447)
T 3dw8_B 437 NNLYIFQD 444 (447)
T ss_dssp SCEEEEEC
T ss_pred ceeeeecc
Confidence 99778864
No 80
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.1e-23 Score=234.88 Aligned_cols=286 Identities=10% Similarity=0.080 Sum_probs=207.6
Q ss_pred CCceE--EEEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEe
Q 001202 20 SSQQI--IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (1124)
Q Consensus 20 ~~~~i--v~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v 96 (1124)
+..+| ++|+|||++||+++ ++.|+||+.. .+..+..+. .+.+.+.+++|+||+++|++++.||.|++|++
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~------~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSL-NGERLGTLD------GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETT-TCCEEEEEC------CCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCC-Cchhhhhhh------hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 44455 78999999999876 5689999996 555544432 13467889999999999999999999999998
Q ss_pred eecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecC-----CcEEEEeccCccccceeecc
Q 001202 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSD-----GSLYSISWKGEFYGAFELVH 171 (1124)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~d-----g~v~~~~Wd~~~~~~~~l~~ 171 (1124)
..+...... . ........++.+++..+++++.+ |.+.+|+.+....... +.
T Consensus 104 ~~~~~~~~~-----------------~-----~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~-~~- 159 (369)
T 3zwl_B 104 SNGQCVATW-----------------K-----SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHE-LT- 159 (369)
T ss_dssp TTCCEEEEE-----------------E-----CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCC-EE-
T ss_pred CCCcEEEEe-----------------e-----cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCcccee-ec-
Confidence 754321100 0 01111223455677888888888 9998865543321110 00
Q ss_pred CCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccc-c
Q 001202 172 SSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK-I 250 (1124)
Q Consensus 172 ~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~-~ 250 (1124)
. .... .............+.++ +++++|+.++++..++.+.+||..+ .
T Consensus 160 ---------~---~~~~---------~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~dg~i~i~d~~~~~ 208 (369)
T 3zwl_B 160 ---------K---VSEE---------PIHKIITHEGLDAATVA----------GWSTKGKYIIAGHKDGKISKYDVSNNY 208 (369)
T ss_dssp ---------E---ECSS---------CSEEEECCTTCCCEEEE----------EECGGGCEEEEEETTSEEEEEETTTTT
T ss_pred ---------c---cccc---------eeeeccCCcCccceeEE----------EEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence 0 0000 00000011111245444 4558899999999999999999876 3
Q ss_pred ce---ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE
Q 001202 251 DK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (1124)
Q Consensus 251 ~~---~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs 326 (1124)
+. ..+|...+ +++|+|++++|++|+.||.|++||+.+ +.....+. +..++.+++|+|+|..+++++
T Consensus 209 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~ 278 (369)
T 3zwl_B 209 EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYE---------TDCPLNTAVITPLKEFIILGG 278 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEE---------CSSCEEEEEECSSSSEEEEEE
T ss_pred EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC-Cceeeeec---------CCCCceeEEecCCCceEEEee
Confidence 32 26788888 999999999999999999999999988 77777776 678899999999999999999
Q ss_pred CCC--------------cEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCC
Q 001202 327 KSR--------------GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 382 (1124)
Q Consensus 327 ~Dg--------------~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~ 382 (1124)
.++ .+++||..++..+.++.+| ...|++++|+|++ +.+++|+ .+++|+.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~~~----~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 279 GQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-FGPLNTVAISPQG----TSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp CCC-------------CEEEEEETTTCCEEEEEECC-SSCEEEEEECTTS----SEEEEEETTSEEEEEEECH
T ss_pred cCCCceEEEEecCCCcceeEEEecCCCcchhheecc-cCcEEEEEECCCC----CEEEEEcCCCeEEEEECcc
Confidence 998 8999999999999999988 6789999999987 6676655 666776654
No 81
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.92 E-value=1.2e-23 Score=240.12 Aligned_cols=288 Identities=11% Similarity=0.090 Sum_probs=201.2
Q ss_pred eEEEEeeCCe-EEEEEc----CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecC---CcEEEEEeCCCeEEEE
Q 001202 23 QIIYFKVNNG-LLLIAS----PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD---TKLIAVVTSSLYLHIF 94 (1124)
Q Consensus 23 ~iv~fS~dg~-llA~~~----~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPD---g~~Lav~t~dg~l~i~ 94 (1124)
..++|+|+|. ++++++ +++|+||+.. .+....... ..+.+.+.+++|+|| |+.|++++.+|.|++|
T Consensus 22 ~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~-~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 95 (357)
T 3i2n_A 22 FDCKWVPCSAKFVTMGNFARGTGVIQLYEIQ-HGDLKLLRE-----IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIW 95 (357)
T ss_dssp EEEEECTTSSEEEEEEC--CCCEEEEEEEEC-SSSEEEEEE-----EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEE
T ss_pred EEEEEcCCCceEEEecCccCCCcEEEEEeCC-CCcccceee-----ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEE
Confidence 3478999986 555553 6789999996 443322211 123567889999999 6999999999999999
Q ss_pred EeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEE--------eecCCeEEEEecCCcEEEEeccCccccc
Q 001202 95 KVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--------VSDNKHMLLGLSDGSLYSISWKGEFYGA 166 (1124)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--------~~d~~~llv~t~dg~v~~~~Wd~~~~~~ 166 (1124)
++..+..... .+.++...|.++ .+++..+++++.||.+++|+........
T Consensus 96 d~~~~~~~~~----------------------~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~ 153 (357)
T 3i2n_A 96 NLEAPEMPVY----------------------SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPV 153 (357)
T ss_dssp CTTSCSSCSE----------------------EECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCS
T ss_pred eCCCCCccEE----------------------EEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcc
Confidence 9976541111 011223334443 4567889999999999885443221111
Q ss_pred eeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeee
Q 001202 167 FELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAE 246 (1124)
Q Consensus 167 ~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd 246 (1124)
..+. .........+.++.+++ +++++|+.+++++.++.+++||
T Consensus 154 ~~~~-------------------------------~~~~~~~~~v~~~~~~~------~~~~~~~~l~~~~~d~~i~i~d 196 (357)
T 3i2n_A 154 ANME-------------------------------PVQGENKRDCWTVAFGN------AYNQEERVVCAGYDNGDIKLFD 196 (357)
T ss_dssp EEEC-------------------------------CCTTSCCCCEEEEEEEC------CCC-CCCEEEEEETTSEEEEEE
T ss_pred eecc-------------------------------ccCCCCCCceEEEEEEe------ccCCCCCEEEEEccCCeEEEEE
Confidence 1100 00111234666666543 2468999999999999999999
Q ss_pred cccccee--cCCCCeE-EEEEcc---CCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCC
Q 001202 247 FIKIDKE--LGSGDAV-CASIAP---EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS 320 (1124)
Q Consensus 247 ~~~~~~~--~gh~~~v-~va~sp---dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~ 320 (1124)
..+++.. .+|...+ +++|+| ++.++++|+.||.|++||+.+ +.....+..... .+|.+.|.+++|+|+|.
T Consensus 197 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~ 272 (357)
T 3i2n_A 197 LRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSE---KAHKSTVWQVRHLPQNR 272 (357)
T ss_dssp TTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEE---ECCSSCEEEEEEETTEE
T ss_pred CccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeecc---CCCcCCEEEEEECCCCC
Confidence 9877643 5678888 999999 999999999999999999976 433322221100 12899999999999999
Q ss_pred -EEEEEECCCcEEEEEcCCC-------------------eeeEEeccCCcCceeeeEEcCCCCCCcceEE-Eee---eEE
Q 001202 321 -AFAVGWKSRGLTVWSVSGC-------------------RLMSTIRQISLSSISSPIVKPNQDCKYEPLM-SGT---SMM 376 (1124)
Q Consensus 321 -~Lasgs~Dg~I~vWdv~~~-------------------~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~-sg~---~i~ 376 (1124)
+|++|+.||.|++||+..+ .++.++.+| ...|++++|+|++ +.++ +|+ .++
T Consensus 273 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~----~~l~~s~~~d~~i~ 347 (357)
T 3i2n_A 273 ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS-TQPISSLDWSPDK----RGLCVCSSFDQTVR 347 (357)
T ss_dssp EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC-SSCEEEEEECSSS----TTEEEEEETTSEEE
T ss_pred cEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC-CCCeeEEEEcCCC----CeEEEEecCCCcEE
Confidence 8999999999999999743 456777777 7789999999988 6666 555 788
Q ss_pred EEeCCCCe
Q 001202 377 QWDEYGYR 384 (1124)
Q Consensus 377 ~W~~~~~~ 384 (1124)
+|+....+
T Consensus 348 iw~~~~~~ 355 (357)
T 3i2n_A 348 VLIVTKLN 355 (357)
T ss_dssp EEEECC--
T ss_pred EEECCCcc
Confidence 88876544
No 82
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.92 E-value=2.1e-23 Score=235.78 Aligned_cols=264 Identities=13% Similarity=0.056 Sum_probs=195.3
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccc----e---ecCCCCeE-EEEEcc--CCCEEEE
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----K---ELGSGDAV-CASIAP--EQQILAV 273 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~----~---~~gh~~~v-~va~sp--dg~lLAs 273 (1124)
+.+|...|.++.|+ +||+++++++.|+++++|+..+.. . +.+|...| +++|+| ++++|++
T Consensus 7 ~~gH~~~v~~~~~~----------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s 76 (351)
T 3f3f_A 7 DSGHDDLVHDVVYD----------FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIAS 76 (351)
T ss_dssp ECCCSSCEEEEEEC----------SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEE
T ss_pred CcccccceeEEEEc----------CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEE
Confidence 45788889887776 788999999999999999987542 1 25899999 999999 6999999
Q ss_pred EecCCeEEEEEcCCCC--------ceeEEEeeccCCCCCCCCCCeEEEEECCC--CCEEEEEECCCcEEEEEcCCCeeeE
Q 001202 274 GTRRGVVELYDLAESA--------SLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCRLMS 343 (1124)
Q Consensus 274 Gs~DgtV~vwd~~~~~--------~~~~~l~~~~~g~~~~h~g~V~~lawSPD--G~~Lasgs~Dg~I~vWdv~~~~l~~ 343 (1124)
|+.||+|++||+.... .....+. + |.++|.+++|+|+ |.+|++|+.||.|++||+.++..+.
T Consensus 77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~----~----~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLN----D----SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp EETTSCEEEEEECTTSCTTSSCSEEEEEEEC----C----CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT
T ss_pred EcCCCeEEEEecCCCcccccccCcceeeeec----c----cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc
Confidence 9999999999998722 2344444 4 9999999999999 9999999999999999998766543
Q ss_pred Eec-------------cCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeE--EEEecCCcceEEEE--ec-c
Q 001202 344 TIR-------------QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL--YAIEEGSSERVLIF--SF-G 402 (1124)
Q Consensus 344 tl~-------------~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l--~~~~~~~~~~v~~~--s~-~ 402 (1124)
++. +| ...+.+++|+|+... ...++++. .+..|....++. .....+|...|..+ ++ +
T Consensus 149 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~ 226 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANH-LQSDFCLSWCPSRFS-PEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSI 226 (351)
T ss_dssp CCEEEEEEESCSCCCSSC-SCCCEEEEECCCSSS-CCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCS
T ss_pred cccccccccccccccCCc-ccceeEEEeccCCCC-CcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCC
Confidence 332 23 567899999997211 15666655 666777776665 56667888888554 44 4
Q ss_pred ----ceEEeeccCCceeeeEeeecCCeEEEeecCCC--------------------cc----ceee--ecccceeeccCC
Q 001202 403 ----KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT--------------------DE----LKIL--HLNLPVSYISQN 452 (1124)
Q Consensus 403 ----k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~--------------------~~----~~w~--~~~~p~~~~~~~ 452 (1124)
+.+++++.|+++++|++..+............ .. ..|. ..+....+.+|.
T Consensus 227 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 306 (351)
T 3f3f_A 227 GRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN 306 (351)
T ss_dssp SCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS
T ss_pred CCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence 68999999999999998875432211110000 00 0111 123345677899
Q ss_pred CceEEEEEccCCCEEEEEcCCCeE-EEEcCCC-cEEE
Q 001202 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK-KWRV 487 (1124)
Q Consensus 453 ~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg-~wk~ 487 (1124)
.+|.+++|+|+|++||+||.||.+ +|++.++ .|+.
T Consensus 307 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 307 GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence 999999999999999999999999 9999875 4443
No 83
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.92 E-value=1.4e-23 Score=243.25 Aligned_cols=280 Identities=7% Similarity=0.043 Sum_probs=186.5
Q ss_pred CceEEEEeeCCeEEEEEcCC--------cEEEEecCCCcee-----EEEEeeChHHHhh-hcceeEEEEecCCcEEEEEe
Q 001202 21 SQQIIYFKVNNGLLLIASPC--------HIELWSSSQHKVR-----LGKYKRDSESVQR-EGENLQAVWSPDTKLIAVVT 86 (1124)
Q Consensus 21 ~~~iv~fS~dg~llA~~~~~--------~l~IW~~~~~~~~-----l~~~~r~~~sl~~-~G~~~~v~wSPDg~~Lav~t 86 (1124)
+...++|+|||++||+++.+ .|+||++. +... +..... -.+.. ...+. +++||+..++++.
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~-~~~~~~~~~~~~~~~--~~l~~~~~~v~--s~~~~~~~~~~g~ 90 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVD-PTKDTEKEQFHILSE--FALEDNDDSPT--AIDASKGIILVGC 90 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEEC-TTSSSHHHHEEEEEE--EECCTTSCCCC--EEEEETTEEEEEC
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEc-CCCcceeeeeeeeeE--EEccCCCCceE--EEEeCCCEEEEEE
Confidence 45568999999999997632 49999985 3211 111100 00111 12233 4456667777664
Q ss_pred -----------CCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeeccc--ccceEEEEeecCCeEEEEe--cC
Q 001202 87 -----------SSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAE--KGLSVSNIVSDNKHMLLGL--SD 151 (1124)
Q Consensus 87 -----------~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~d~~~llv~t--~d 151 (1124)
.++++++|++......+... ... .. ..... ....+.++++|+..+++++ .|
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~---------~~~----~~-~~~~~~~~~~~~v~fSpDg~~la~as~~~d 156 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFL---------TSV----DF-DASTNADDYTKLVYISREGTVAAIASSKVP 156 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEE---------EEE----CS-SCCCCTTCCEEEEEECTTSSCEEEEESCSS
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEe---------eee----ce-eecCCcccCEEEEEEcCCCCEEEEEECCCC
Confidence 46789999987644221110 000 00 00011 1234567888999988776 47
Q ss_pred CcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCc
Q 001202 152 GSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ 231 (1124)
Q Consensus 152 g~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~ 231 (1124)
+.|++ |+.+...... ...+...|.+++| +|||+
T Consensus 157 ~~i~i--wd~~~~~~~~-----------------------------------~~~~~~~V~~v~f----------spdg~ 189 (365)
T 4h5i_A 157 AIMRI--IDPSDLTEKF-----------------------------------EIETRGEVKDLHF----------STDGK 189 (365)
T ss_dssp CEEEE--EETTTTEEEE-----------------------------------EEECSSCCCEEEE----------CTTSS
T ss_pred CEEEE--eECCCCcEEE-----------------------------------EeCCCCceEEEEE----------ccCCc
Confidence 88887 5543322110 0123344555444 58899
Q ss_pred EEEEEecCCceEeeecccccee-----cCCCCeE-EEEEccCCCEEEEEecCC----eEEEEEcCCCCce----eEEEee
Q 001202 232 LMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPEQQILAVGTRRG----VVELYDLAESASL----IRTVSL 297 (1124)
Q Consensus 232 ~~~~~~~d~~i~~wd~~~~~~~-----~gh~~~v-~va~spdg~lLAsGs~Dg----tV~vwd~~~~~~~----~~~l~~ 297 (1124)
++++++.+ .+.+|+..+++.. .+|...+ +++|+|+++++++++.|+ ++++|++.. ... ...+.
T Consensus 190 ~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~-~~~~~~~~~~~~- 266 (365)
T 4h5i_A 190 VVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS-GNTSVLRSKQVT- 266 (365)
T ss_dssp EEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET-TEEEEEEEEEEE-
T ss_pred eEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc-ceecceeeeeec-
Confidence 88887755 4556665555432 5688888 999999999999999988 688899876 322 12233
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEe-ccCCcCceeeeEEcCCCCCCcceEEEee---
Q 001202 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI-RQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl-~~h~~~~V~s~~~sp~~~~~~~~l~sg~--- 373 (1124)
+ |.++|++++|||||++||+|+.|++|+|||+.+++++.++ .+| ...|++++|+|++ +.++||+
T Consensus 267 ---~----~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH-~~~V~~v~fSpdg----~~laS~S~D~ 334 (365)
T 4h5i_A 267 ---N----RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH-SFAITEVTISPDS----TYVASVSAAN 334 (365)
T ss_dssp ---S----SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS-SSCEEEEEECTTS----CEEEEEETTS
T ss_pred ---C----CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc-cCCEEEEEECCCC----CEEEEEeCCC
Confidence 4 8999999999999999999999999999999999999886 566 8899999999998 7777776
Q ss_pred eEEEEeCC
Q 001202 374 SMMQWDEY 381 (1124)
Q Consensus 374 ~i~~W~~~ 381 (1124)
++++|++.
T Consensus 335 tvrvw~ip 342 (365)
T 4h5i_A 335 TIHIIKLP 342 (365)
T ss_dssp EEEEEECC
T ss_pred eEEEEEcC
Confidence 77777753
No 84
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.1e-22 Score=227.56 Aligned_cols=273 Identities=12% Similarity=0.147 Sum_probs=214.9
Q ss_pred ecccccceEEEEe-ecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccC
Q 001202 127 PFAEKGLSVSNIV-SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF 205 (1124)
Q Consensus 127 ~~~~~~~~v~~i~-~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~ 205 (1124)
.+.++...|.+++ ++++.+++++.||.+++|+.+... ... ...
T Consensus 13 ~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~--~~~----------------------------------~~~ 56 (313)
T 3odt_A 13 TLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQW--LGT----------------------------------VVY 56 (313)
T ss_dssp EECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSE--EEE----------------------------------EEE
T ss_pred HhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCE--EEE----------------------------------Eee
Confidence 3455666777755 577889999999999986543221 110 112
Q ss_pred CCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccc------eecCCCCeE-EEEEccCCCEEEEEecCC
Q 001202 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID------KELGSGDAV-CASIAPEQQILAVGTRRG 278 (1124)
Q Consensus 206 ~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~------~~~gh~~~v-~va~spdg~lLAsGs~Dg 278 (1124)
.+...|.++.| +|+|+.+++++.++.+++|+..... ...+|...+ +++| +++++++|+.||
T Consensus 57 ~~~~~v~~~~~----------~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~ 124 (313)
T 3odt_A 57 TGQGFLNSVCY----------DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDK 124 (313)
T ss_dssp ECSSCEEEEEE----------ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred cCCccEEEEEE----------CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCC
Confidence 34455655544 5889999999999999999876432 226788999 9988 577999999999
Q ss_pred eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECC-CCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeE
Q 001202 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 357 (1124)
Q Consensus 279 tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~ 357 (1124)
+|++|| . ......+. + |.++|.+++|+| ++..+++++.||.|++|| .......+...+...+.+++
T Consensus 125 ~i~~~d--~-~~~~~~~~----~----~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~ 191 (313)
T 3odt_A 125 TAKVWK--E-GSLVYNLQ----A----HNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLA 191 (313)
T ss_dssp EEEEEE--T-TEEEEEEE----C----CSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEE
T ss_pred CEEEEc--C-CcEEEecc----c----CCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEE
Confidence 999999 3 55666666 4 899999999998 999999999999999999 45667788774478999999
Q ss_pred EcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec--cceEEeeccCCceeeeEeeecCCeEEEeecC
Q 001202 358 VKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 432 (1124)
Q Consensus 358 ~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~--~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~ 432 (1124)
++|++ . +++|+ .+.+|+..++++.....+|...|..+.+ ...+++++.|+.+++|++..+..
T Consensus 192 ~~~~~----~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-------- 258 (313)
T 3odt_A 192 VVDDG----H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL-------- 258 (313)
T ss_dssp EEETT----E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCE--------
T ss_pred EcCCC----e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCce--------
Confidence 99997 5 66655 8999999999999888889888855554 33689999999999999866543
Q ss_pred CCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEE
Q 001202 433 DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (1124)
Q Consensus 433 ~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk 486 (1124)
...+..|..+|.+++|+|+|+ +++++.||.+ +||+.++++.
T Consensus 259 ------------~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 259 ------------KQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp ------------EEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred ------------eEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 345667888999999999999 5569999999 9999987753
No 85
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.92 E-value=1.4e-23 Score=240.18 Aligned_cols=291 Identities=13% Similarity=0.177 Sum_probs=218.1
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCC-cEEEEEecCCceEeeecccccee--------cCCCCeE-EEEEccC----CC
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNG-QLMSCSVSKKGLKLAEFIKIDKE--------LGSGDAV-CASIAPE----QQ 269 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG-~~~~~~~~d~~i~~wd~~~~~~~--------~gh~~~v-~va~spd----g~ 269 (1124)
..+|...|.++.|+|.. ++| ..++++..++.+++|+..+++.. ..|...+ +++|+|+ ++
T Consensus 14 ~~~h~~~v~~i~~~p~~-------~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 86 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHS-------KEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP 86 (366)
T ss_dssp ECTTCSCEEEEEECTTC-------CTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE
T ss_pred ecCCCCceEEEEEeccc-------CCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC
Confidence 34688899999998751 233 34444555668999998765432 2366778 9999999 77
Q ss_pred EEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECC-CCCEEEEEECCCcEEEEEcCCCeeeEEe---
Q 001202 270 ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTI--- 345 (1124)
Q Consensus 270 lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I~vWdv~~~~l~~tl--- 345 (1124)
+||+|+.||+|++||+.+ ++.+..+. + |.++|.+++|+| ++..|++|+.||.|++||+.+++....+
T Consensus 87 ~l~~~~~dg~i~v~d~~~-~~~~~~~~----~----~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 87 LLAVAGSRGIIRIINPIT-MQCIKHYV----G----HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp EEEEEETTCEEEEECTTT-CCEEEEEE----S----CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred EEEEecCCCEEEEEEchh-ceEeeeec----C----CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 999999999999999988 77777776 5 999999999999 9999999999999999999999998888
Q ss_pred ccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEE----------------------------EecCCcc
Q 001202 346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYA----------------------------IEEGSSE 394 (1124)
Q Consensus 346 ~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~----------------------------~~~~~~~ 394 (1124)
.+| ...|.+++|+|++ ..+++|+ .+.+|+..+++... ...+|..
T Consensus 158 ~~~-~~~v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 158 EGH-RDEVLSADYDLLG----EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp TSC-SSCEEEEEECTTS----SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred ccc-cCceeEEEECCCC----CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 556 7889999999988 7888776 89999998765432 2223677
Q ss_pred eEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccC--CCEEEEEc
Q 001202 395 RVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD--GMFLAVAG 471 (1124)
Q Consensus 395 ~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~Spd--G~~lAvag 471 (1124)
.|..+.+ ++.+++++.|+.+++|++..+...+....... ........+.+|..+|.+++|+|+ |++|++|+
T Consensus 233 ~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~ 306 (366)
T 3k26_A 233 YVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSE------SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN 306 (366)
T ss_dssp CCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTC------CCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC
T ss_pred eEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCC------cchheeccccccCCcEEEEEEcCCCCCcEEEEEe
Confidence 7755555 88999999999999999876544211000000 011123456678889999999999 99999999
Q ss_pred CCCeE-EEEcCCCcE-----EEecCcCceeeeEEEEEEecC--CEEEEEEEecCCCeEEEEEeeC
Q 001202 472 LHGLI-LYDIRQKKW-----RVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 472 ~dG~v-lwd~~sg~w-----k~f~~~~~e~~~~v~gl~W~~--~~liv~~~~~~~~~~elrly~~ 528 (1124)
.||.+ +||+.+++. ..+.. +.....+..++|.. .++++++. +..|++|+.
T Consensus 307 ~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~-----dg~i~iwd~ 364 (366)
T 3k26_A 307 QVGKLYVWDLEVEDPHKAKCTTLTH--HKCGAAIRQTSFSRDSSILIAVCD-----DASIWRWDR 364 (366)
T ss_dssp TTSCEEEEECCSSSGGGCEEEEECC--TTCCSCEEEEEECTTSSEEEEEET-----TSEEEEEEC
T ss_pred cCCcEEEEECCCCCCccccceEEcc--cccCCceEEEEeCCCCCeEEEEeC-----CCEEEEEEe
Confidence 99999 999988642 12222 21123577888964 46666633 237999976
No 86
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.92 E-value=2e-22 Score=236.25 Aligned_cols=273 Identities=15% Similarity=0.206 Sum_probs=204.3
Q ss_pred EeeC-CeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeec
Q 001202 27 FKVN-NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQI 105 (1124)
Q Consensus 27 fS~d-g~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~ 105 (1124)
++++ +.+++++.+++|+||+.. .+......... +.+.+.+++|+|||++|++++.+|.|++|++..+....
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~-~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-- 170 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNAD-SGSVSALAETD-----ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR-- 170 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETT-TCCEEEEEECC-----TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--
T ss_pred EeecCCCEEEEECCCeEEEeeCC-CCcEeEeeecC-----CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE--
Confidence 3433 346677778899999996 55443333221 35678899999999999999999999999986542111
Q ss_pred CCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCcccccccccc
Q 001202 106 GGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHF 185 (1124)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs 185 (1124)
.+.++...|.++..+++.+++++.||.+++|+...... ..
T Consensus 171 ---------------------~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~------------------ 210 (401)
T 4aez_A 171 ---------------------TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH-QI------------------ 210 (401)
T ss_dssp ---------------------EECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC-EE------------------
T ss_pred ---------------------EecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc-ee------------------
Confidence 12234557888888899999999999998854432111 00
Q ss_pred CCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-E
Q 001202 186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-C 261 (1124)
Q Consensus 186 ~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~ 261 (1124)
.....+...|.++.|+ +||+.+++++.|+++++||..+++.. .+|...+ +
T Consensus 211 ----------------~~~~~~~~~v~~~~~~----------~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 264 (401)
T 4aez_A 211 ----------------GTLQGHSSEVCGLAWR----------SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA 264 (401)
T ss_dssp ----------------EEEECCSSCEEEEEEC----------TTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred ----------------eEEcCCCCCeeEEEEc----------CCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence 0133556677766665 78999999999999999998876543 6788999 9
Q ss_pred EEEccCC-CEEEEEe--cCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE--CCCcEEEEEc
Q 001202 262 ASIAPEQ-QILAVGT--RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW--KSRGLTVWSV 336 (1124)
Q Consensus 262 va~spdg-~lLAsGs--~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs--~Dg~I~vWdv 336 (1124)
++|+|++ .++++|+ .||+|++||+.+ +..+..+. |.+.|.+++|+|+|..+++++ .||.|++|++
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVD---------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTT-CCEEEEEE---------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCC-CCEEEEEe---------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence 9999976 5777765 799999999988 77777776 677899999999999999954 8999999999
Q ss_pred CCCeeeE--EeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEE
Q 001202 337 SGCRLMS--TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI 388 (1124)
Q Consensus 337 ~~~~l~~--tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~ 388 (1124)
.++.... .+.+| ...|.+++|+|++ ..+++++ .+++|+..+++....
T Consensus 335 ~~~~~~~~~~~~~h-~~~v~~~~~s~dg----~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 335 SSSGLTKQVDIPAH-DTRVLYSALSPDG----RILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp ETTEEEEEEEEECC-SSCCCEEEECTTS----SEEEEECTTSEEEEEECCC------
T ss_pred CCccceeEEEecCC-CCCEEEEEECCCC----CEEEEEeCCCcEEEEECCCCccccc
Confidence 9866544 45566 6789999999998 7788766 888999887765543
No 87
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.92 E-value=1.9e-23 Score=234.69 Aligned_cols=239 Identities=12% Similarity=0.150 Sum_probs=184.0
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCC-CceeEEEeeccCCCCCCCCCCeEEEEECCC--CCEEEEEECCC
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSR 329 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~-~~~~~~l~~~~~g~~~~h~g~V~~lawSPD--G~~Lasgs~Dg 329 (1124)
.+|.+.| +++|+|+|++||+|+.||+|+||++... .+.+.++. | |+++|.+++|+|+ |++||+|+.||
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~----g----H~~~V~~v~~s~~~~g~~l~s~s~D~ 77 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT----G----HEGPVWRVDWAHPKFGTILASCSYDG 77 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC----C----CSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc----c----ccCCeEEEEecCCCcCCEEEEEcCCC
Confidence 5899999 9999999999999999999999999752 35566776 5 9999999999874 89999999999
Q ss_pred cEEEEEcCCCe--eeEEeccCCcCceeeeEEcCC--CCCCcceEEEee---eEEEEeCCCCeE--EEEecCCcceEEEEe
Q 001202 330 GLTVWSVSGCR--LMSTIRQISLSSISSPIVKPN--QDCKYEPLMSGT---SMMQWDEYGYRL--YAIEEGSSERVLIFS 400 (1124)
Q Consensus 330 ~I~vWdv~~~~--l~~tl~~h~~~~V~s~~~sp~--~~~~~~~l~sg~---~i~~W~~~~~~l--~~~~~~~~~~v~~~s 400 (1124)
+|++||+.++. .+.++.+| ...|.+++|+|+ + ..+++|+ ++++|+...... .....+|...|..+.
T Consensus 78 ~v~iWd~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~g----~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~ 152 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYG----PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (297)
T ss_dssp EEEEEEBSSSCBCCCEEECCC-SSCEEEEEECCGGGC----SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE
T ss_pred EEEEEEcCCCceEEEEEeecC-CCceeEEEeCcCCCC----cEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEe
Confidence 99999998764 55677777 778999999997 4 6788776 899999876531 244567777775444
Q ss_pred c----------------cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCC
Q 001202 401 F----------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (1124)
Q Consensus 401 ~----------------~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG 464 (1124)
+ ++.+++++.|+++++|++..+.... .+...+.+|..+|++++|+|+|
T Consensus 153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~----------------~~~~~l~~H~~~V~~v~~sp~~ 216 (297)
T 2pm7_B 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY----------------VLESTLEGHSDWVRDVAWSPTV 216 (297)
T ss_dssp ECCCC------------CCEEEEEETTSCEEEEEEETTTTEE----------------EEEEEECCCSSCEEEEEECCCC
T ss_pred ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE----------------EEEEEecCCCCceEEEEECCCC
Confidence 3 2579999999999999987655311 0124567899999999999995
Q ss_pred ---CEEEEEcCCCeE-EEEcCCC--cEE--EecCcCceeeeEEEEEEecC--CEEEEEEEecCCCeEEEEEeeC
Q 001202 465 ---MFLAVAGLHGLI-LYDIRQK--KWR--VFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 465 ---~~lAvag~dG~v-lwd~~sg--~wk--~f~~~~~e~~~~v~gl~W~~--~~liv~~~~~~~~~~elrly~~ 528 (1124)
++||+|+.||++ +||+.++ .|+ .+....+ .-.+..+.|.+ ..+++++. + ..+++|+.
T Consensus 217 ~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~las~~~---D--~~v~lw~~ 283 (297)
T 2pm7_B 217 LLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF--PDVLWRASWSLSGNVLALSGG---D--NKVTLWKE 283 (297)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC--SSCEEEEEECSSSCCEEEEET---T--SCEEEEEE
T ss_pred CCceEEEEEECCCcEEEEEeCCCCCccceeeeecccC--CCcEEEEEECCCCCEEEEEcC---C--CcEEEEEE
Confidence 899999999999 9999774 243 2211112 22467788864 45665533 2 36899976
No 88
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.92 E-value=1.3e-22 Score=239.43 Aligned_cols=233 Identities=18% Similarity=0.210 Sum_probs=188.6
Q ss_pred CCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEE
Q 001202 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVE 281 (1124)
Q Consensus 206 ~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~ 281 (1124)
.+...|+++.|+ |||+++++++.|+++++||..+++.. .+|...+ ++++ ++.++++|+.|++++
T Consensus 145 ~~~~~V~sv~fs----------pdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~ 212 (420)
T 4gga_A 145 QPGEYISSVAWI----------KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIH 212 (420)
T ss_dssp STTCCEEEEEEC----------TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred CCCCcEEEEEEC----------CCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCcee
Confidence 456678776666 88999999999999999999887654 6888888 7765 567999999999999
Q ss_pred EEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCe----eeEEeccCCcCceeeeE
Q 001202 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR----LMSTIRQISLSSISSPI 357 (1124)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~----l~~tl~~h~~~~V~s~~ 357 (1124)
+|+.......+.++. + |.+.+.++.|+|+|..+++++.|+.+++|+...+. .+.....| ...|.+++
T Consensus 213 ~~d~~~~~~~~~~~~----~----h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~-~~~V~~~~ 283 (420)
T 4gga_A 213 HHDVRVAEHHVATLS----G----HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-QGAVKAVA 283 (420)
T ss_dssp EEETTSSSCEEEEEE----C----CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC-SSCEEEEE
T ss_pred EeeecccceeeEEec----c----cccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeeccc-CCceeeee
Confidence 999987556666666 5 99999999999999999999999999999997654 34455556 67899999
Q ss_pred EcCCCCCCcceEEE--ee---eEEEEeCCCCeEEEEecCCcceE-EEEec-cceEEee--ccCCceeeeEeeecCCeEEE
Q 001202 358 VKPNQDCKYEPLMS--GT---SMMQWDEYGYRLYAIEEGSSERV-LIFSF-GKCCLNR--GVSGMTYARQVIYGEDRLLV 428 (1124)
Q Consensus 358 ~sp~~~~~~~~l~s--g~---~i~~W~~~~~~l~~~~~~~~~~v-~~~s~-~k~~~s~--s~d~~v~~w~l~~~~~~l~l 428 (1124)
|+|.+. ..+++ |+ ++++|+..++++......+.... ..+.+ ++.++++ +.|+.+++|++..+..
T Consensus 284 ~~p~~~---~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~---- 356 (420)
T 4gga_A 284 WCPWQS---NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK---- 356 (420)
T ss_dssp ECTTCT---TEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE----
T ss_pred eCCCcc---cEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE----
Confidence 999862 34443 32 89999999999888876654333 44455 6666654 4789999999765543
Q ss_pred eecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC
Q 001202 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 429 ~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s 482 (1124)
..++.+|..+|.+++|||||++||+||.||++ +||+..
T Consensus 357 ----------------v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 357 ----------------VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp ----------------EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred ----------------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 45677999999999999999999999999999 999865
No 89
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.92 E-value=1.7e-23 Score=248.27 Aligned_cols=282 Identities=13% Similarity=0.170 Sum_probs=195.2
Q ss_pred EEEEeeC-CeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEec-CCcEEEEEeCCCeEEEEEeeecC
Q 001202 24 IIYFKVN-NGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQITE 100 (1124)
Q Consensus 24 iv~fS~d-g~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSP-Dg~~Lav~t~dg~l~i~~v~~~~ 100 (1124)
.++|+|. +.+||+++ +++|+|||.. ......... ...+.+.+.+++|+| |+++|++++.||+|++||+....
T Consensus 124 ~l~~~P~~~~~lasGs~dg~i~lWd~~-~~~~~~~~~----~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~ 198 (435)
T 4e54_B 124 SLAWHPTHPSTVAVGSKGGDIMLWNFG-IKDKPTFIK----GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI 198 (435)
T ss_dssp EEEECSSCTTCEEEEETTSCEEEECSS-CCSCCEEEC----CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE
T ss_pred EEEEeCCCCCEEEEEeCCCEEEEEECC-CCCceeEEE----ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc
Confidence 3889995 67899876 5689999986 322211111 112457889999999 78999999999999999986432
Q ss_pred ceeecCCCCCCCcceeeEEEEeeeeeecccccceE--EEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccc
Q 001202 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (1124)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~ 178 (1124)
.......+ .....+ .++.+++..+++|+.||.|++|+.++... .
T Consensus 199 ~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~--~----------- 244 (435)
T 4e54_B 199 LRVFASSD---------------------TINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL--W----------- 244 (435)
T ss_dssp EEEEECCS---------------------SCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC--C-----------
T ss_pred eeEEeccC---------------------CCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee--E-----------
Confidence 11111110 011112 24556778899999999999865432211 0
Q ss_pred cccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCc-EEEEEecCCceEeeecccccee----
Q 001202 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE---- 253 (1124)
Q Consensus 179 i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~-~~~~~~~d~~i~~wd~~~~~~~---- 253 (1124)
.+..|...|.++.|+ |+|. ++++++.|+++++||..+.+..
T Consensus 245 ------------------------~~~~h~~~v~~v~~~----------p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~ 290 (435)
T 4e54_B 245 ------------------------NLRMHKKKVTHVALN----------PCCDWFLATASVDQTVKIWDLRQVRGKASFL 290 (435)
T ss_dssp ------------------------CSBCCSSCEEEEEEC----------TTCSSEEEEEETTSBCCEEETTTCCSSSCCS
T ss_pred ------------------------EEecccceEEeeeec----------CCCceEEEEecCcceeeEEecccccccceEE
Confidence 133566778777776 5554 6778889999999998765321
Q ss_pred --cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE----
Q 001202 254 --LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW---- 326 (1124)
Q Consensus 254 --~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs---- 326 (1124)
.+|.+.| +++|+|+|++|++|+.||+|+|||+.+ +.....+..+... ......+..+.|+|++..+++++
T Consensus 291 ~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~ 367 (435)
T 4e54_B 291 YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ-WDCPLGLIPHPHR--HFQHLTPIKAAWHPRYNLIVVGRYPDP 367 (435)
T ss_dssp BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS-SSSEEEECCCCCC--CCSSSCCCBCEECSSSSCEEEECCCCT
T ss_pred EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC-CccceEEeccccc--ccccceeEEEEEcCCCCEEEEEEcCCC
Confidence 4789999 999999999999999999999999987 6555554421110 00111233456777777776664
Q ss_pred --------CCCcEEEEEcCCCeeeEEeccCCcCceeee-EEcCCCCCCcceEEEee--eEEEEeCCCCeE
Q 001202 327 --------KSRGLTVWSVSGCRLMSTIRQISLSSISSP-IVKPNQDCKYEPLMSGT--SMMQWDEYGYRL 385 (1124)
Q Consensus 327 --------~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~-~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l 385 (1124)
.++.|++||..++.++.++.+++...|.++ +|+|++ ..+++|+ ++++|+.+.++.
T Consensus 368 ~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg----~~lasg~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 368 NFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG----DTLASAMGYHILIWSQQEART 433 (435)
T ss_dssp TSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTS----SCEEEECSSEEEECCCC----
T ss_pred CeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC----CEEEEEcCCcEEEEECCcCee
Confidence 346799999999999999876557788887 699998 7888876 889999887653
No 90
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.91 E-value=9.7e-23 Score=241.59 Aligned_cols=273 Identities=14% Similarity=0.214 Sum_probs=215.1
Q ss_pred ccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCce
Q 001202 131 KGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSA 210 (1124)
Q Consensus 131 ~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~ 210 (1124)
+...|.|+..+++.+++|+.||.|++|+. ....... .+.+|...
T Consensus 132 ~~~~v~~~~~d~~~l~~g~~dg~i~iwd~--~~~~~~~----------------------------------~~~~h~~~ 175 (435)
T 1p22_A 132 TSKGVYCLQYDDQKIVSGLRDNTIKIWDK--NTLECKR----------------------------------ILTGHTGS 175 (435)
T ss_dssp SCCCEEEEECCSSEEEEEESSSCEEEEES--SSCCEEE----------------------------------EECCCSSC
T ss_pred CCCcEEEEEECCCEEEEEeCCCeEEEEeC--CCCeEEE----------------------------------EEcCCCCc
Confidence 34568999999999999999999998543 3221110 12345666
Q ss_pred EEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcC
Q 001202 211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLA 286 (1124)
Q Consensus 211 I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~ 286 (1124)
|.++.+ ||+.+++++.|+++++||..+++.. .+|.+.+ +++|++ ..+++|+.||+|++||+.
T Consensus 176 v~~l~~------------~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~ 241 (435)
T 1p22_A 176 VLCLQY------------DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMA 241 (435)
T ss_dssp EEEEEC------------CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECS
T ss_pred EEEEEE------------CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCC
Confidence 765443 6889999999999999999877653 6899999 999974 599999999999999998
Q ss_pred CCCcee---EEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCC
Q 001202 287 ESASLI---RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 363 (1124)
Q Consensus 287 ~~~~~~---~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~ 363 (1124)
+ +... ..+. + |.++|.+++| +|..+++|+.||+|++||+.++.++.++.+| ...|.++.++ +
T Consensus 242 ~-~~~~~~~~~~~----~----~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~- 306 (435)
T 1p22_A 242 S-PTDITLRRVLV----G----HRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH-KRGIACLQYR--D- 306 (435)
T ss_dssp S-SSCCEEEEEEC----C----CSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEE--T-
T ss_pred C-CCCceeeeEec----C----CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC-CCcEEEEEeC--C-
Confidence 7 4433 3333 4 9999999999 8899999999999999999999999999988 6789988884 3
Q ss_pred CCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCcccee
Q 001202 364 CKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (1124)
Q Consensus 364 ~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w 439 (1124)
..+++|+ ++++|+..++++.....+|...|.++.+ ++.+++++.||++++|++..+.... .+
T Consensus 307 ---~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~-------~~---- 372 (435)
T 1p22_A 307 ---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR-------AP---- 372 (435)
T ss_dssp ---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTT-------SC----
T ss_pred ---CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCcc-------cc----
Confidence 5677766 8999999999999999999999988888 8889999999999999987655310 00
Q ss_pred eecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 440 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 440 ~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
........+.+|..+|.+++| +|+++++||.||.+ +||+.++.
T Consensus 373 ~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 373 AGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp TTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred ccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 000013456789999999999 88999999999999 99997754
No 91
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.5e-22 Score=239.35 Aligned_cols=256 Identities=9% Similarity=0.096 Sum_probs=193.4
Q ss_pred eEEEEec-CCcEEEEEecCCceEeeeccc---cc-----eecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcC---CC
Q 001202 222 LLFVLYS-NGQLMSCSVSKKGLKLAEFIK---ID-----KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLA---ES 288 (1124)
Q Consensus 222 ~~~~~s~-dG~~~~~~~~d~~i~~wd~~~---~~-----~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~---~~ 288 (1124)
..++++| ||+++++++.|+++++||..+ +. ...+|...| +++|+|++++||+|+.||+|++||+. .
T Consensus 67 ~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~- 145 (437)
T 3gre_A 67 TSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQ- 145 (437)
T ss_dssp EEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEE-
T ss_pred EEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccC-
Confidence 4455558 899999999999999999876 32 113688999 99999999999999999999999995 3
Q ss_pred CceeEEEeecc---CCCCC-CCCCCeEEEE--ECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccC-CcCceeeeEEcCC
Q 001202 289 ASLIRTVSLYD---WGYSM-DDTGPVSCIA--WTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPN 361 (1124)
Q Consensus 289 ~~~~~~l~~~~---~g~~~-~h~g~V~~la--wSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h-~~~~V~s~~~sp~ 361 (1124)
++......... ....+ ++.+.+.++. ++|||..|++|+.||.|++||+.+++++.++.++ +...|++++|+|+
T Consensus 146 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~ 225 (437)
T 3gre_A 146 ESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE 225 (437)
T ss_dssp TTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT
T ss_pred CceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC
Confidence 33333222110 00000 1567788888 7799999999999999999999999999999883 3789999999999
Q ss_pred CCCCcceEEEee---eEEEEeCCCCeEEEEec-CCcceEEEE----ec---cceEEeeccCCceeeeEeeecCCeEEEee
Q 001202 362 QDCKYEPLMSGT---SMMQWDEYGYRLYAIEE-GSSERVLIF----SF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (1124)
Q Consensus 362 ~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~-~~~~~v~~~----s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~ 430 (1124)
+ ..+++|+ ++++|+...++++.... +|...|..+ .+ ++.+++++.|+++++|++..+.. +....
T Consensus 226 ~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~ 300 (437)
T 3gre_A 226 C----CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC-QYAFI 300 (437)
T ss_dssp S----CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE-EEEEE
T ss_pred C----CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE-EEEEE
Confidence 8 8888877 89999999999888765 677778655 32 55889999999999999866543 22233
Q ss_pred cCCC--ccceeeecc---cceeecc--CCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 431 SEDT--DELKILHLN---LPVSYIS--QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 431 ~~~~--~~~~w~~~~---~p~~~~~--~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
++.. ....+.... ....+.+ |..+|.+++|+ +|++|++||.||.+ +||+.+++
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 301 NSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp SSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred cCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence 3221 111121100 0112344 88899999999 88999999999999 99998875
No 92
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.91 E-value=5e-23 Score=241.07 Aligned_cols=333 Identities=13% Similarity=0.074 Sum_probs=194.6
Q ss_pred eEEEE---ecCCcEEEEEeCCCeEEEEEeeecCceeecCCC------CCCCcceeeEEEEeeeeeecccc--cceEEEEe
Q 001202 71 LQAVW---SPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGK------QPSGLFFIKISLVLNEQLPFAEK--GLSVSNIV 139 (1124)
Q Consensus 71 ~~v~w---SPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~i~ 139 (1124)
..+.| +|++..++.++.++.|++|+............. -..+.....+.+........... ...+.+..
T Consensus 19 ~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (393)
T 4gq1_A 19 YTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSP 98 (393)
T ss_dssp EEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CC
T ss_pred eEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecC
Confidence 46777 455555555556888999988654321100000 00011112222221111111111 12233344
Q ss_pred ecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCC
Q 001202 140 SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP 219 (1124)
Q Consensus 140 ~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~ 219 (1124)
+++..++.++.|+++++|+.+........ ....+.+|...|.+++|+|.
T Consensus 99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~-------------------------------~~~~~~gH~~~v~~v~~~p~ 147 (393)
T 4gq1_A 99 VYSLFLACVCQDNTVRLIITKNETIITQH-------------------------------VLGGKSGHHNFVNDIDIADV 147 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEETTEEEEEE-------------------------------EECTTTSCSSCEEEEEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccceee-------------------------------eecccCCCCCceEEEEEccc
Confidence 55667888899999998543322111110 00134578899999999863
Q ss_pred cceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCC-EEEEEecCCeEEEEEcCCCCceeEE
Q 001202 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRT 294 (1124)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~-lLAsGs~DgtV~vwd~~~~~~~~~~ 294 (1124)
.. .....||+++++++.|+++++||..+.... .+|...+ +++|+|++. +|++|+.||+|++||+.+ ++....
T Consensus 148 ~~--~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t-~~~~~~ 224 (393)
T 4gq1_A 148 YS--ADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL-NLSAEE 224 (393)
T ss_dssp EC--TTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC-CC----
T ss_pred cc--cccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC-Cccccc
Confidence 21 011248999999999999999998765432 5677778 999999875 899999999999999987 332221
Q ss_pred Eeec--------------cC---CCCCCCCCCeEEEEEC-CCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeee
Q 001202 295 VSLY--------------DW---GYSMDDTGPVSCIAWT-PDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 356 (1124)
Q Consensus 295 l~~~--------------~~---g~~~~h~g~V~~lawS-PDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~ 356 (1124)
.... .. ....+|...|.+++|+ |||+.|++++.|+++++||+.++.....+..| ...+..+
T Consensus 225 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~-~~~~~~~ 303 (393)
T 4gq1_A 225 NSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDS-TMKLGPK 303 (393)
T ss_dssp ------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------
T ss_pred ccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeee-cCccccE
Confidence 1100 00 0113588899999997 89999999999999999999998888777776 4556666
Q ss_pred EEcCCCCCCcceEEEee--eEEEEeCCCCeEEEEecCCcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCC
Q 001202 357 IVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (1124)
Q Consensus 357 ~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~ 433 (1124)
.+.|+. ....... ....|.+ .. +..+++++.|+++++|++..+..
T Consensus 304 ~~~~~~----~~~~~~~~~~~~~~~~-------------------~~~~~~~~sgs~Dg~V~lwd~~~~~~--------- 351 (393)
T 4gq1_A 304 NLLPNV----QGISLFPSLLGACPHP-------------------RYMDYFATAHSQHGLIQLINTYEKDS--------- 351 (393)
T ss_dssp CCSCSE----EEECSSCCSSCCEECS-------------------SCTTEEEEEETTTTEEEEEETTCTTC---------
T ss_pred EEcccc----ccccccCcceeEEEcc-------------------CCCCEEEEEECCCCEEEEEECCCCcE---------
Confidence 666654 1111100 0001111 11 33457889999999999876655
Q ss_pred CccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeEEEEcC
Q 001202 434 TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIR 481 (1124)
Q Consensus 434 ~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~vlwd~~ 481 (1124)
.....+|..+|++++|||||++||+|+.+|.++|.+.
T Consensus 352 -----------~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 352 -----------NSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp -----------CEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred -----------EEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 3455678889999999999999999999998887653
No 93
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.9e-22 Score=231.88 Aligned_cols=247 Identities=16% Similarity=0.110 Sum_probs=194.5
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecc--ccce---ecCCCCeE-EEEEccC--CCEEEEEe
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI--KIDK---ELGSGDAV-CASIAPE--QQILAVGT 275 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~--~~~~---~~gh~~~v-~va~spd--g~lLAsGs 275 (1124)
+.+|...|.++.|+ +||+++++++.|+++++|+.. +.+. +.+|.+.| +++|+|+ +++||+|+
T Consensus 7 ~~~h~~~v~~~~~s----------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 76 (379)
T 3jrp_A 7 ANAHNELIHDAVLD----------YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS 76 (379)
T ss_dssp EEECCCCEEEEEEC----------SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred ecCCcccEEEEEEc----------CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec
Confidence 34677778776666 889999999999999999987 3322 36899999 9999987 99999999
Q ss_pred cCCeEEEEEcCCCCc--eeEEEeeccCCCCCCCCCCeEEEEECCC--CCEEEEEECCCcEEEEEcCCCe--eeEEeccCC
Q 001202 276 RRGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR--LMSTIRQIS 349 (1124)
Q Consensus 276 ~DgtV~vwd~~~~~~--~~~~l~~~~~g~~~~h~g~V~~lawSPD--G~~Lasgs~Dg~I~vWdv~~~~--l~~tl~~h~ 349 (1124)
.||+|++||+.+ ++ ....+. + |.++|.+++|+|+ |..|++|+.||.|++||+.++. ....+.+|
T Consensus 77 ~dg~v~iwd~~~-~~~~~~~~~~----~----~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~- 146 (379)
T 3jrp_A 77 YDGKVLIWKEEN-GRWSQIAVHA----V----HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH- 146 (379)
T ss_dssp TTSCEEEEEEET-TEEEEEEEEC----C----CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC-
T ss_pred cCCEEEEEEcCC-CceeEeeeec----C----CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC-
Confidence 999999999987 54 344443 4 8999999999999 9999999999999999998763 34455566
Q ss_pred cCceeeeEEcCC-------------CCCCcceEEEee---eEEEEeCCCC----eEEEEecCCcceEEEEe--c----cc
Q 001202 350 LSSISSPIVKPN-------------QDCKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSSERVLIFS--F----GK 403 (1124)
Q Consensus 350 ~~~V~s~~~sp~-------------~~~~~~~l~sg~---~i~~W~~~~~----~l~~~~~~~~~~v~~~s--~----~k 403 (1124)
...|.+++|+|. + ..+++|+ .+++|+..++ .+.....+|...|..+. + ++
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~ 222 (379)
T 3jrp_A 147 AIGVNSASWAPATIEEDGEHNGTKES----RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 222 (379)
T ss_dssp TTCEEEEEECCCC----------CTT----CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred CCceEEEEEcCccccccccccCCCCC----CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC
Confidence 678999999994 4 6777776 8999998754 35556678888885444 4 36
Q ss_pred eEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcC-
Q 001202 404 CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR- 481 (1124)
Q Consensus 404 ~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~- 481 (1124)
.+++++.|+.+++|++..+..... ........|..+|.+++|+|+|++|++++.||.+ +|++.
T Consensus 223 ~l~s~~~dg~i~iwd~~~~~~~~~---------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 223 YLASVSQDRTCIIWTQDNEQGPWK---------------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEEEETTSCEEEEEESSTTSCCE---------------EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred eEEEEeCCCEEEEEeCCCCCccce---------------eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 789999999999999877643100 0011223478899999999999999999999999 99997
Q ss_pred CCcEEEec
Q 001202 482 QKKWRVFG 489 (1124)
Q Consensus 482 sg~wk~f~ 489 (1124)
.++|..+.
T Consensus 288 ~~~~~~~~ 295 (379)
T 3jrp_A 288 EGKWEPAG 295 (379)
T ss_dssp TTEEEEEE
T ss_pred CCcccccc
Confidence 45666554
No 94
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.91 E-value=3.3e-22 Score=232.09 Aligned_cols=289 Identities=13% Similarity=0.115 Sum_probs=207.0
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCC-cEEEEEecCCceEeeecccccee-----cCCCCeE-EEEEcc-CCCEEEEEe
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNG-QLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAP-EQQILAVGT 275 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG-~~~~~~~~d~~i~~wd~~~~~~~-----~gh~~~v-~va~sp-dg~lLAsGs 275 (1124)
+.++...|.++.|+ ++| +++++++.|+++++|+..+.+.. .+|.+.| +++|+| ++.+|++|+
T Consensus 69 ~~~h~~~v~~~~~~----------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 69 ASPFDRRVTSLEWH----------PTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp ECCCSSCEEEEEEC----------SSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred ccCCCCCEEEEEEC----------CCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 34566777666655 788 89999999999999998865432 3799999 999999 789999999
Q ss_pred cCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceee
Q 001202 276 RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISS 355 (1124)
Q Consensus 276 ~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s 355 (1124)
.||+|++||+.. .....+... ..|.+.|.+++|+|||..|++|+.||.|++||+. +..+.++.+| ...|.+
T Consensus 139 ~d~~i~iwd~~~--~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h-~~~v~~ 209 (383)
T 3ei3_B 139 IRGATTLRDFSG--SVIQVFAKT-----DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLH-KAKVTH 209 (383)
T ss_dssp TTTEEEEEETTS--CEEEEEECC-----CCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECS-SSCEEE
T ss_pred CCCEEEEEECCC--CceEEEecc-----CCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccC-CCcEEE
Confidence 999999999984 444444411 1266889999999999999999999999999994 5678888887 789999
Q ss_pred eEEcCCCCCCcc-eEEEee---eEEEEeCCC----CeEEEEecCCcceEEEE--ec--cceEEeeccCCceeeeEeeecC
Q 001202 356 PIVKPNQDCKYE-PLMSGT---SMMQWDEYG----YRLYAIEEGSSERVLIF--SF--GKCCLNRGVSGMTYARQVIYGE 423 (1124)
Q Consensus 356 ~~~sp~~~~~~~-~l~sg~---~i~~W~~~~----~~l~~~~~~~~~~v~~~--s~--~k~~~s~s~d~~v~~w~l~~~~ 423 (1124)
++|+|++ + .+++|+ ++++|+... +.+.... +|...|..+ ++ ++.+++++.|+.+++|++..+.
T Consensus 210 ~~~~~~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 210 AEFNPRC----DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp EEECSSC----TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred EEECCCC----CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence 9999998 6 778776 899999987 5666555 577788544 44 5789999999999999987765
Q ss_pred CeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEE-EecCcCceeeeEEEE
Q 001202 424 DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKG 501 (1124)
Q Consensus 424 ~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk-~f~~~~~e~~~~v~g 501 (1124)
....+.. +..... .+.............+..++++|||++ +|+.||.+ +||+.+++.. .+....+. ..+..
T Consensus 285 ~~~~~~~-~~~~~~--~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~--~~~~~ 357 (383)
T 3ei3_B 285 KPDQIII-HPHRQF--QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAA--GIISL 357 (383)
T ss_dssp SCSEEEE-CCBCCC--TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBC--SCCCE
T ss_pred ccccccc-cccccc--ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCC--ceEEE
Confidence 4211111 100000 000000001112345667888999988 88999999 9999988753 33222222 22334
Q ss_pred EEec--CCEEEEEEEecCCCeEEEEEeeCC
Q 001202 502 LLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 502 l~W~--~~~liv~~~~~~~~~~elrly~~~ 529 (1124)
++|. +.+++++ . + ..|++|+.+
T Consensus 358 ~~~s~~g~~l~s~-s---d--~~i~iw~~~ 381 (383)
T 3ei3_B 358 NKFSPTGDVLASG-M---G--FNILIWNRE 381 (383)
T ss_dssp EEECTTSSEEEEE-E---T--TEEEEEECC
T ss_pred EEEecCccEEEEe-c---C--CcEEEEecC
Confidence 5775 4455555 2 2 379999763
No 95
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.91 E-value=9.4e-22 Score=228.63 Aligned_cols=289 Identities=10% Similarity=0.047 Sum_probs=211.5
Q ss_pred hhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEE--eec--
Q 001202 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSD-- 141 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~d-- 141 (1124)
+.+.+.+++|+| ++|++++.||.|++|++....... .. .....+.++...|.++ .++
T Consensus 15 h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~----------~~-------~~~~~~~~h~~~v~~~~~~~~~~ 75 (397)
T 1sq9_A 15 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN----------PK-------DKSYSHFVHKSGLHHVDVLQAIE 75 (397)
T ss_dssp SSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC----------GG-------GGEEEEECCTTCEEEEEEEEEEE
T ss_pred hhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccccc----------CC-------CcceEEecCCCcEEEEEEecccc
Confidence 457889999999 799999999999999998654100 00 0001112333445554 455
Q ss_pred --C---CeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCC-----CceE
Q 001202 142 --N---KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI-----SSAI 211 (1124)
Q Consensus 142 --~---~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~-----~~~I 211 (1124)
+ ..+++++.||.|++|+.+........ .......+ ...|
T Consensus 76 ~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~v 124 (397)
T 1sq9_A 76 RDAFELCLVATTSFSGDLLFYRITREDETKKV-------------------------------IFEKLDLLDSDMKKHSF 124 (397)
T ss_dssp TTTEEEEEEEEEETTSCEEEEEEEECTTTCCE-------------------------------EEEEECCSCTTGGGSCE
T ss_pred cCCccccEEEEEcCCCCEEEEEccCCcccccc-------------------------------cceeecccccccCCCcE
Confidence 6 78888999999998655432210000 00011122 3566
Q ss_pred EEEEecCCcceEEEEecCCcE-EEEEecCCceEeeeccc------cce--------e-------cCCCCeE-EEEEccCC
Q 001202 212 IWLELCLPMRLLFVLYSNGQL-MSCSVSKKGLKLAEFIK------IDK--------E-------LGSGDAV-CASIAPEQ 268 (1124)
Q Consensus 212 ~~i~~s~~~~~~~~~s~dG~~-~~~~~~d~~i~~wd~~~------~~~--------~-------~gh~~~v-~va~spdg 268 (1124)
.++.|++.. .++|+. +++++.++.+++||..+ .+. + ..|...+ +++|+|++
T Consensus 125 ~~~~~~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 198 (397)
T 1sq9_A 125 WALKWGASN------DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG 198 (397)
T ss_dssp EEEEEECCC----------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS
T ss_pred EEEEEeecc------CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc
Confidence 655544111 067888 88888999999998876 332 2 2367778 99999999
Q ss_pred CEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCC---CCCeEEEEECCCCCEEEEEECC---CcEEEEEcCCCeee
Q 001202 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD---TGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGCRLM 342 (1124)
Q Consensus 269 ~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h---~g~V~~lawSPDG~~Lasgs~D---g~I~vWdv~~~~l~ 342 (1124)
++++|+.||.|++||+.+ ++.+..+... .+| .++|.+++|+|||.+|++|+.| |.|++||+.+++.+
T Consensus 199 -~l~~~~~dg~i~i~d~~~-~~~~~~~~~~-----~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~ 271 (397)
T 1sq9_A 199 -LIATGFNNGTVQISELST-LRPLYNFESQ-----HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI 271 (397)
T ss_dssp -EEEEECTTSEEEEEETTT-TEEEEEEECC-----C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred -eEEEEeCCCcEEEEECCC-CceeEEEecc-----ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCccc
Confidence 999999999999999987 7777766621 126 8899999999999999999999 99999999999999
Q ss_pred EEecc-------------CCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEec------CC--------
Q 001202 343 STIRQ-------------ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE------GS-------- 392 (1124)
Q Consensus 343 ~tl~~-------------h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~------~~-------- 392 (1124)
.++.+ | ...|.+++|+|++ +.+++|+ .+.+|+..+++++.... +|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~ 346 (397)
T 1sq9_A 272 GSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSG----ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD 346 (397)
T ss_dssp EEECBC--------CCBSB-SSCEEEEEECSSS----SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBC
T ss_pred ceeccCccccccccccccc-CCcEEEEEECCCC----CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccc
Confidence 99988 6 7889999999998 7888876 89999999999988888 77
Q ss_pred -------cceEEEEe--c-c----------ceEEeeccCCceeeeEeeec
Q 001202 393 -------SERVLIFS--F-G----------KCCLNRGVSGMTYARQVIYG 422 (1124)
Q Consensus 393 -------~~~v~~~s--~-~----------k~~~s~s~d~~v~~w~l~~~ 422 (1124)
...|..+. + + +.+++++.|+.+++|++..+
T Consensus 347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 77885544 4 4 68999999999999998664
No 96
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.90 E-value=4.2e-23 Score=234.12 Aligned_cols=239 Identities=15% Similarity=0.141 Sum_probs=177.0
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCc--eeEEEeeccCCCCCCCCCCeEEEEECC--CCCEEEEEECC
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKS 328 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~--~~~~l~~~~~g~~~~h~g~V~~lawSP--DG~~Lasgs~D 328 (1124)
.+|.+.| +++|+|+|++||+|+.||+|+|||+.+ +. .+.++. | |.++|.+++|+| +|+.||+|+.|
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~-~~~~~~~~l~----g----H~~~V~~v~~~~~~~~~~l~s~s~D 80 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRN-GGQILIADLR----G----HEGPVWQVAWAHPMYGNILASCSYD 80 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEET-TEEEEEEEEE----C----CSSCEEEEEECCGGGSSCEEEEETT
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecC-CCcEEEEEEc----C----CCccEEEEEeCCCCCCCEEEEEECC
Confidence 5899999 999999999999999999999999986 43 345565 5 999999999986 48999999999
Q ss_pred CcEEEEEcCCC--eeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeE---EEEecCCcceE--EE
Q 001202 329 RGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL---YAIEEGSSERV--LI 398 (1124)
Q Consensus 329 g~I~vWdv~~~--~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l---~~~~~~~~~~v--~~ 398 (1124)
++|++||+.++ ....++.+| ...|.+++|+|+. ....+++|+ ++++|+..+... .....+|...+ +.
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~h-~~~V~~v~~~p~~--~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (316)
T 3bg1_A 81 RKVIIWREENGTWEKSHEHAGH-DSSVNSVCWAPHD--YGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS 157 (316)
T ss_dssp SCEEEECCSSSCCCEEEEECCC-SSCCCEEEECCTT--TCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred CEEEEEECCCCcceEEEEccCC-CCceEEEEECCCC--CCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence 99999999876 356677777 7889999999983 116788876 899999887532 23345666666 33
Q ss_pred Eec------------------cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEE
Q 001202 399 FSF------------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA 460 (1124)
Q Consensus 399 ~s~------------------~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~ 460 (1124)
+++ ++.+++++.|+++++|++..+... +....+.+|..+|++++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-----------------~~~~~l~~h~~~V~~v~~ 220 (316)
T 3bg1_A 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-----------------KEEQKLEAHSDWVRDVAW 220 (316)
T ss_dssp ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-----------------EEEECCBCCSSCEEEEEC
T ss_pred EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-----------------ceeeecccCCCceEEEEe
Confidence 433 257899999999999997533220 012456789999999999
Q ss_pred ccCC----CEEEEEcCCCeE-EEEcCC---CcEEEecCcCceeeeEEEEEEecC--CEEEEEEEecCCCeEEEEEeeC
Q 001202 461 SKDG----MFLAVAGLHGLI-LYDIRQ---KKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 461 SpdG----~~lAvag~dG~v-lwd~~s---g~wk~f~~~~~e~~~~v~gl~W~~--~~liv~~~~~~~~~~elrly~~ 528 (1124)
+|++ ++||+|+.||++ +|++.+ ++|... ..+...-.|..++|.+ ..+++++. + ..+++|+.
T Consensus 221 sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~--~~~~~~~~v~~v~~sp~g~~las~~~---D--~~v~lw~~ 291 (316)
T 3bg1_A 221 APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPK--LLHKFNDVVWHVSWSITANILAVSGG---D--NKVTLWKE 291 (316)
T ss_dssp CCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCC--EEEECSSCEEEEEECTTTCCEEEEES---S--SCEEEEEE
T ss_pred cCCCCCCCceEEEEcCCCeEEEEEccCccccchhhh--hhhcCCCcEEEEEEcCCCCEEEEEcC---C--CeEEEEEE
Confidence 9997 899999999999 999876 233210 0011112467888974 45666643 2 36899976
No 97
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.90 E-value=1.6e-21 Score=218.80 Aligned_cols=235 Identities=17% Similarity=0.197 Sum_probs=181.8
Q ss_pred CCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 001202 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (1124)
Q Consensus 206 ~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v~va~spdg~lLAsGs~DgtV~v 282 (1124)
.+...|.++.|+ ++|+++++++.|+++++|+..+++.. .+|...+ .++++++..+++|+.++.+++
T Consensus 65 ~~~~~V~~v~~~----------~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~-~~~~~~~~~l~s~~~~~~~~~ 133 (318)
T 4ggc_A 65 QPGEYISSVAWI----------KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV-GSLSWNSYILSSGSRSGHIHH 133 (318)
T ss_dssp STTCCEEEEEEC----------TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE-EEEEEETTEEEEEETTSEEEE
T ss_pred CCCCeEEEEEEC----------CCCCEEEEEECCCcEEEeecCCceeEEEecCccceE-EEeecCCCEEEEEecCCceEe
Confidence 456667666555 88999999999999999999887654 6787766 335566789999999999999
Q ss_pred EEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCee----eEEeccCCcCceeeeEE
Q 001202 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL----MSTIRQISLSSISSPIV 358 (1124)
Q Consensus 283 wd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l----~~tl~~h~~~~V~s~~~ 358 (1124)
|+.......+..+. + |.+.+.+++|+++|++|++|+.||+|++||+.+++. ......+ ...|.++++
T Consensus 134 ~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~ 204 (318)
T 4ggc_A 134 HDVRVAEHHVATLS----G----HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-QGAVKAVAW 204 (318)
T ss_dssp EETTSSSCEEEEEE----C----CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCC-CSCEEEEEE
T ss_pred eecCCCceeEEEEc----C----ccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeeccc-CCceEEEEe
Confidence 99887455566666 5 999999999999999999999999999999987542 2333344 567899999
Q ss_pred cCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceE--EEEec-cceEEe--eccCCceeeeEeeecCCeEEEee
Q 001202 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLN--RGVSGMTYARQVIYGEDRLLVVQ 430 (1124)
Q Consensus 359 sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s--~s~d~~v~~w~l~~~~~~l~l~~ 430 (1124)
+|++. ..-.+.+|+ ++++|+............ ...+ ..+.+ ++.+++ ++.|+++++|++..+..
T Consensus 205 ~~~~~-~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~------ 276 (318)
T 4ggc_A 205 CPWQS-NVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK------ 276 (318)
T ss_dssp CTTST-TEEEEEECTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE------
T ss_pred cCCCC-cEEEEEecCCCCEEEEEecccccccccccc-eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE------
Confidence 98762 111223443 789999998877665543 3334 45555 555554 45799999999766543
Q ss_pred cCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC
Q 001202 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 431 ~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s 482 (1124)
..++.+|..+|++++|||||++||+||.||++ +||+..
T Consensus 277 --------------~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 277 --------------VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp --------------EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred --------------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 45677899999999999999999999999999 999854
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.90 E-value=3.5e-22 Score=233.92 Aligned_cols=267 Identities=14% Similarity=0.142 Sum_probs=202.8
Q ss_pred EEEecCCcEEEE-EecCCceEeeeccccc-------eecCCCCeE-EEEEcc-CCCEEEEEecCCeEEEEEcCCCC----
Q 001202 224 FVLYSNGQLMSC-SVSKKGLKLAEFIKID-------KELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESA---- 289 (1124)
Q Consensus 224 ~~~s~dG~~~~~-~~~d~~i~~wd~~~~~-------~~~gh~~~v-~va~sp-dg~lLAsGs~DgtV~vwd~~~~~---- 289 (1124)
++++++...+++ ++.++.+.+|+..... ...+|.+.| +++|+| ++++||+|+.||+|++|++.+..
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~ 119 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc
Confidence 455566655543 5678899999875432 125899999 999999 99999999999999999998732
Q ss_pred --ceeEEEeeccCCCCCCCCCCeEEEEECCCC-CEEEEEECCCcEEEEEcCCCeeeEEe--ccCCcCceeeeEEcCCCCC
Q 001202 290 --SLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTI--RQISLSSISSPIVKPNQDC 364 (1124)
Q Consensus 290 --~~~~~l~~~~~g~~~~h~g~V~~lawSPDG-~~Lasgs~Dg~I~vWdv~~~~l~~tl--~~h~~~~V~s~~~sp~~~~ 364 (1124)
..+..+. + |.+.|.+++|+|+| ..|++|+.||.|++||+.+++...++ .+| ...|.+++|+|++
T Consensus 120 ~~~~~~~~~----~----h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~-- 188 (402)
T 2aq5_A 120 LREPVITLE----G----HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH-PDTIYSVDWSRDG-- 188 (402)
T ss_dssp BCSCSEEEE----C----CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC-CSCEEEEEECTTS--
T ss_pred cCCceEEec----C----CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC-CCceEEEEECCCC--
Confidence 4456666 5 99999999999998 69999999999999999999999999 666 7889999999988
Q ss_pred CcceEEEee---eEEEEeCCCCeEEEEe-cCCcce-E--EEEec-cceEEee---ccCCceeeeEeeecCCeEEEeecCC
Q 001202 365 KYEPLMSGT---SMMQWDEYGYRLYAIE-EGSSER-V--LIFSF-GKCCLNR---GVSGMTYARQVIYGEDRLLVVQSED 433 (1124)
Q Consensus 365 ~~~~l~sg~---~i~~W~~~~~~l~~~~-~~~~~~-v--~~~s~-~k~~~s~---s~d~~v~~w~l~~~~~~l~l~~~~~ 433 (1124)
..+++|+ .+++|++.+++..... .+|... + ..+++ ++.++++ +.|+.+++|++..+...+
T Consensus 189 --~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~------- 259 (402)
T 2aq5_A 189 --ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL------- 259 (402)
T ss_dssp --SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS-------
T ss_pred --CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc-------
Confidence 7888876 8999999999988877 666543 3 55666 7777777 789999999987655411
Q ss_pred CccceeeecccceeeccCCCceEEEEEccCCCEEEEEc-CCCeE-EEEcCCCc--EEEecCcCceeeeEEEEEEecCCEE
Q 001202 434 TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDIRQKK--WRVFGDITQEQKIQSKGLLWLGKII 509 (1124)
Q Consensus 434 ~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag-~dG~v-lwd~~sg~--wk~f~~~~~e~~~~v~gl~W~~~~l 509 (1124)
......|...|.+++|+|+|++++++| .||.+ +||+.+++ ...+....+ .-.+.+++|.++..
T Consensus 260 -----------~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~--~~~v~~~~~sp~~~ 326 (402)
T 2aq5_A 260 -----------SLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSS--KESQRGMGYMPKRG 326 (402)
T ss_dssp -----------EEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECC--SSCCSEEEECCGGG
T ss_pred -----------eEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccccc--CCcccceEEecccc
Confidence 112234667899999999999997554 79999 99999876 333322111 12366788876543
Q ss_pred EEEEEecCCCeEEEEEeeC
Q 001202 510 VVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 510 iv~~~~~~~~~~elrly~~ 528 (1124)
+++ .....+++|..
T Consensus 327 ~~~-----s~~~~~~~~~l 340 (402)
T 2aq5_A 327 LEV-----NKCEIARFYKL 340 (402)
T ss_dssp SCG-----GGTEEEEEEEE
T ss_pred cce-----ecceeEEEEEc
Confidence 332 12236788865
No 99
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.90 E-value=9.8e-22 Score=223.34 Aligned_cols=277 Identities=14% Similarity=0.125 Sum_probs=193.6
Q ss_pred CCceE--EEEeeCCeEEEEEc-CCcEEEEecCCCce---eEEEEeeChHHHhhhcceeEEEEecCCc-EEEEEeCCCeEE
Q 001202 20 SSQQI--IYFKVNNGLLLIAS-PCHIELWSSSQHKV---RLGKYKRDSESVQREGENLQAVWSPDTK-LIAVVTSSLYLH 92 (1124)
Q Consensus 20 ~~~~i--v~fS~dg~llA~~~-~~~l~IW~~~~~~~---~l~~~~r~~~sl~~~G~~~~v~wSPDg~-~Lav~t~dg~l~ 92 (1124)
+...| ++|+|+|.+|++++ +++|+||+.. ... .+.... .+.+.+.+++|+||++ +|++++.+|.|+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~-~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFD-IQAKNVDLLQSL------RYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEE-TTTTEEEEEEEE------ECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeC-CCCccccceeee------ecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 44444 78999999888866 5789999986 333 121111 2456788999999999 999999999999
Q ss_pred EEEe-eecCceeecCCCCCCCcceeeEEEEeeeeeeccc--ccceEEEEeec-CCeEEEEecCCcEEEEeccCcccccee
Q 001202 93 IFKV-QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAE--KGLSVSNIVSD-NKHMLLGLSDGSLYSISWKGEFYGAFE 168 (1124)
Q Consensus 93 i~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~d-~~~llv~t~dg~v~~~~Wd~~~~~~~~ 168 (1124)
+|++ ..+... .+.+ +...|.++... ++.+++++.||.+++|+..........
T Consensus 83 ~wd~~~~~~~~------------------------~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 138 (342)
T 1yfq_A 83 KVDLIGSPSFQ------------------------ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIA 138 (342)
T ss_dssp EECSSSSSSEE------------------------ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred EEEeccCCceE------------------------eccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccccccc
Confidence 9998 654211 1122 33445555543 678889999999988544321000000
Q ss_pred eccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecc
Q 001202 169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI 248 (1124)
Q Consensus 169 l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~ 248 (1124)
.. .+ ......+...|.++.++ +++ ++++..++.+++|+..
T Consensus 139 ~~-----------------~~-----------~~~~~~~~~~v~~~~~~----------~~~--l~~~~~d~~i~i~d~~ 178 (342)
T 1yfq_A 139 VK-----------------NL-----------NSNNTKVKNKIFTMDTN----------SSR--LIVGMNNSQVQWFRLP 178 (342)
T ss_dssp EE-----------------ES-----------CSSSSSSCCCEEEEEEC----------SSE--EEEEESTTEEEEEESS
T ss_pred cc-----------------CC-----------eeeEEeeCCceEEEEec----------CCc--EEEEeCCCeEEEEECC
Confidence 00 00 00011245667777666 444 6777888889999987
Q ss_pred c-cce-----ecCCCCeE-EEEEcc-CCCEEEEEecCCeEEEEEcCCC-----CceeEEEeeccC-CCCCCCCCCeEEEE
Q 001202 249 K-IDK-----ELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAES-----ASLIRTVSLYDW-GYSMDDTGPVSCIA 314 (1124)
Q Consensus 249 ~-~~~-----~~gh~~~v-~va~sp-dg~lLAsGs~DgtV~vwd~~~~-----~~~~~~l~~~~~-g~~~~h~g~V~~la 314 (1124)
+ ... ...|...+ +++|+| +++++++|+.||.|++|+++.. ......+..... ....+|.++|.+++
T Consensus 179 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 258 (342)
T 1yfq_A 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE 258 (342)
T ss_dssp CCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEE
T ss_pred ccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEE
Confidence 6 432 24677788 999999 9999999999999999999874 266666662211 00112456999999
Q ss_pred ECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee
Q 001202 315 WTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1124)
Q Consensus 315 wSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~ 373 (1124)
|+|||++|++|+.||.|++||+.+++++.++.+|+...|.+++ |++ ..+++|+
T Consensus 259 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~----~~l~s~s 311 (342)
T 1yfq_A 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD----NILCLAT 311 (342)
T ss_dssp ECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS----SEEEEEE
T ss_pred EcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC----CeEEEEe
Confidence 9999999999999999999999999999999887567788777 666 5555544
No 100
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.90 E-value=2.5e-22 Score=237.48 Aligned_cols=242 Identities=11% Similarity=0.174 Sum_probs=182.1
Q ss_pred CCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccc--------------eecCCC------------Ce
Q 001202 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--------------KELGSG------------DA 259 (1124)
Q Consensus 206 ~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~--------------~~~gh~------------~~ 259 (1124)
.+...|.+++|+ |||+++++++.|+.+++|+..+.+ .+.+|. +.
T Consensus 26 ~~~~~V~~v~~s----------~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 26 AEADIISTVEFN----------HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CGGGSEEEEEEC----------SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred cccCcEEEEEEC----------CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCc
Confidence 345677766665 889999999999999999987654 236887 77
Q ss_pred E-EEEEccCC--CEEEEEecCCeEEEEEcCCCCceeEE------------------------------------EeeccC
Q 001202 260 V-CASIAPEQ--QILAVGTRRGVVELYDLAESASLIRT------------------------------------VSLYDW 300 (1124)
Q Consensus 260 v-~va~spdg--~lLAsGs~DgtV~vwd~~~~~~~~~~------------------------------------l~~~~~ 300 (1124)
| +++|+|++ ..+++|+.||+|++|++.. +..... ...
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 171 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISE-RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI--- 171 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEE-EEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE---
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEeccc-ccCCcceecccCccccccCcccccceEeccccchheeeeccceEE---
Confidence 8 99999998 8999999999999999875 222100 000
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcC-CCeeeEE-------eccCCcCceeeeEEcCCCCCCcceEEEe
Q 001202 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMST-------IRQISLSSISSPIVKPNQDCKYEPLMSG 372 (1124)
Q Consensus 301 g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~-~~~l~~t-------l~~h~~~~V~s~~~sp~~~~~~~~l~sg 372 (1124)
+..+|.+.|.+++|+|||++|++| .|++|++||+. ++..+.. +.+| ...|++++|+|++. ..+++|
T Consensus 172 -~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~---~~l~s~ 245 (447)
T 3dw8_B 172 -FANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEEL-TEVITAAEFHPNSC---NTFVYS 245 (447)
T ss_dssp -ECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGC-CCCEEEEEECSSCT---TEEEEE
T ss_pred -eccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccccccc-CcceEEEEECCCCC---cEEEEE
Confidence 012499999999999999999999 79999999998 4555553 4456 77899999999852 467777
Q ss_pred e---eEEEEeCCCCeE----EEEecCCcc------------eEE--EEec-cceEEeeccCCceeeeEeeecCCeEEEee
Q 001202 373 T---SMMQWDEYGYRL----YAIEEGSSE------------RVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (1124)
Q Consensus 373 ~---~i~~W~~~~~~l----~~~~~~~~~------------~v~--~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~ 430 (1124)
+ ++++|+..+++. .....+|.. .|. ++++ ++.+++++. +++++|++......
T Consensus 246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~----- 319 (447)
T 3dw8_B 246 SSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRP----- 319 (447)
T ss_dssp ETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSC-----
T ss_pred eCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccc-----
Confidence 6 899999998876 566666654 674 4455 788888888 99999998652221
Q ss_pred cCCCccceeeecccceeeccCCC---------------ceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEE
Q 001202 431 SEDTDELKILHLNLPVSYISQNW---------------PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV 487 (1124)
Q Consensus 431 ~~~~~~~~w~~~~~p~~~~~~~~---------------~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~ 487 (1124)
...+.+|.. .+..++|+|+|++|++|+.||.+ +||+.+++...
T Consensus 320 --------------~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 320 --------------VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp --------------SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred --------------cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 223333332 13349999999999999999999 99999987644
No 101
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.90 E-value=4.3e-21 Score=217.97 Aligned_cols=272 Identities=9% Similarity=0.048 Sum_probs=207.3
Q ss_pred hhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEE--EeecCC
Q 001202 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNK 143 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~d~~ 143 (1124)
+.+.+.+++|+||+++|++++.+|.|++|++..+..... .. ....+...|.+ +.+++.
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~------------~~--------~~~~~~~~v~~~~~~~~~~ 69 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD------------LL--------QSLRYKHPLLCCNFIDNTD 69 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE------------EE--------EEEECSSCEEEEEEEESSS
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc------------ce--------eeeecCCceEEEEECCCCC
Confidence 457789999999999999999999999999986531100 00 01122334444 456778
Q ss_pred -eEEEEecCCcEEEEec-cCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCC--CCceEEEEEecCC
Q 001202 144 -HMLLGLSDGSLYSISW-KGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP--ISSAIIWLELCLP 219 (1124)
Q Consensus 144 -~llv~t~dg~v~~~~W-d~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~--~~~~I~~i~~s~~ 219 (1124)
.+++++.||.|++|+. +.. ... .+.. +...|.++.|+
T Consensus 70 ~~l~~~~~dg~i~~wd~~~~~--~~~-----------------------------------~~~~~~~~~~v~~l~~~-- 110 (342)
T 1yfq_A 70 LQIYVGTVQGEILKVDLIGSP--SFQ-----------------------------------ALTNNEANLGICRICKY-- 110 (342)
T ss_dssp EEEEEEETTSCEEEECSSSSS--SEE-----------------------------------ECBSCCCCSCEEEEEEE--
T ss_pred cEEEEEcCCCeEEEEEeccCC--ceE-----------------------------------eccccCCCCceEEEEeC--
Confidence 8999999999988554 322 111 1223 66677766665
Q ss_pred cceEEEEecCCcEEEEEecCCceEeeeccc---------ccee--cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCC
Q 001202 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIK---------IDKE--LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE 287 (1124)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~---------~~~~--~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~ 287 (1124)
+ ++.+++++.|+.+++||..+ .+.. ..|...+ +++|+|++ +++|+.||+|++||+..
T Consensus 111 --------~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 111 --------G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp --------T-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSC
T ss_pred --------C-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCc
Confidence 6 77888889999999999876 4432 3477888 99999998 99999999999999986
Q ss_pred -CCceeEEEeeccCCCCCCCCCCeEEEEECC-CCCEEEEEECCCcEEEEEcCCC------eeeEEeccCC--------cC
Q 001202 288 -SASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC------RLMSTIRQIS--------LS 351 (1124)
Q Consensus 288 -~~~~~~~l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I~vWdv~~~------~l~~tl~~h~--------~~ 351 (1124)
......... .+ |...|.+++|+| ||..+++|+.||.|++|++... ....++..|. ..
T Consensus 180 ~~~~~~~~~~---~~----~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (342)
T 1yfq_A 180 CEDDNGTIEE---SG----LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252 (342)
T ss_dssp CTTCCCEEEE---CS----CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCC
T ss_pred cccccceeee---cC----CCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccce
Confidence 333222222 12 788999999999 9999999999999999999876 7777887762 23
Q ss_pred ceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCC-cceEEEEec-cceEEeeccCCc-eeeeE
Q 001202 352 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS-SERVLIFSF-GKCCLNRGVSGM-TYARQ 418 (1124)
Q Consensus 352 ~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~-~~~v~~~s~-~k~~~s~s~d~~-v~~w~ 418 (1124)
.|.+++|+|++ ..+++|+ .+.+|+..+++++....+| ...|..+.+ ++.+++++.|++ .+.+.
T Consensus 253 ~i~~~~~s~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 253 PVNSIEFSPRH----KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CEEEEEECTTT----CCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred eEEEEEEcCCC----CEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCccccccc
Confidence 89999999998 7888876 8999999999999998888 888865556 888999999998 55544
No 102
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.89 E-value=1.1e-21 Score=229.82 Aligned_cols=240 Identities=11% Similarity=0.128 Sum_probs=188.8
Q ss_pred cCCCCceEEEEEecCCcceEEEEec-CCcEEEEEecCCceEeeeccccc----------eecCCCCeE-EEEEccCC-CE
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKID----------KELGSGDAV-CASIAPEQ-QI 270 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~-dG~~~~~~~~d~~i~~wd~~~~~----------~~~gh~~~v-~va~spdg-~l 270 (1124)
+.+|...|.++.|+ | +|+++++++.|+++++|+..++. .+.+|.+.| +++|+|++ .+
T Consensus 77 ~~~h~~~V~~~~~~----------p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 146 (402)
T 2aq5_A 77 VCGHTAPVLDIAWC----------PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146 (402)
T ss_dssp BCCCSSCEEEEEEC----------TTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTE
T ss_pred EecCCCCEEEEEeC----------CCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCE
Confidence 34677889887777 5 78899999999999999987652 236899999 99999998 69
Q ss_pred EEEEecCCeEEEEEcCCCCceeEEE--eeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEe-cc
Q 001202 271 LAVGTRRGVVELYDLAESASLIRTV--SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI-RQ 347 (1124)
Q Consensus 271 LAsGs~DgtV~vwd~~~~~~~~~~l--~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl-~~ 347 (1124)
|++|+.||+|++||+.+ ++.+.++ . + |.+.|.+++|+|||..|++|+.||.|++||+.++..+.++ .+
T Consensus 147 l~s~~~dg~i~iwd~~~-~~~~~~~~~~----~----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 217 (402)
T 2aq5_A 147 LLSAGCDNVILVWDVGT-GAAVLTLGPD----V----HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRP 217 (402)
T ss_dssp EEEEETTSCEEEEETTT-TEEEEEECTT----T----CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred EEEEcCCCEEEEEECCC-CCccEEEecC----C----CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccC
Confidence 99999999999999988 7766666 3 4 8999999999999999999999999999999999999998 67
Q ss_pred CCcCceeeeEEcCCCCCCcceEEEe---e---eEEEEeCCCCeE-E-EEecCCcceE--EEEec-cceEE-eeccCCcee
Q 001202 348 ISLSSISSPIVKPNQDCKYEPLMSG---T---SMMQWDEYGYRL-Y-AIEEGSSERV--LIFSF-GKCCL-NRGVSGMTY 415 (1124)
Q Consensus 348 h~~~~V~s~~~sp~~~~~~~~l~sg---~---~i~~W~~~~~~l-~-~~~~~~~~~v--~~~s~-~k~~~-s~s~d~~v~ 415 (1124)
|....+..+.|+|++ ..+++| . .+.+|+..+.+. . ....++...+ ..+++ ++.++ +++.|+.++
T Consensus 218 ~~~~~~~~~~~~~~~----~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~ 293 (402)
T 2aq5_A 218 HEGTRPVHAVFVSEG----KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIR 293 (402)
T ss_dssp SCSSSCCEEEECSTT----EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEE
T ss_pred CCCCcceEEEEcCCC----cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEE
Confidence 744458999999998 788877 2 899999987543 2 2222344455 45555 66664 667899999
Q ss_pred eeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcE
Q 001202 416 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (1124)
Q Consensus 416 ~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~w 485 (1124)
+|++..+...+.. ...+ .|..+|.+++|+|+|.++++ .++.+ +|++.+++.
T Consensus 294 i~d~~~~~~~~~~----------------l~~~-~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 294 YFEITSEAPFLHY----------------LSMF-SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEEECSSTTCEEE----------------EEEE-CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred EEEecCCCcceEe----------------eccc-ccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 9998776531110 1112 25689999999999998864 56677 999987653
No 103
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.2e-22 Score=241.49 Aligned_cols=252 Identities=11% Similarity=0.055 Sum_probs=183.3
Q ss_pred EEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEE
Q 001202 136 SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (1124)
Q Consensus 136 ~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~ 215 (1124)
.++++||..++.++.|++|+ +++.... ..+|...|.++.
T Consensus 21 v~~SpDG~~iASas~D~TV~----d~~~~~~-------------------------------------l~gh~~~v~~V~ 59 (588)
T 2j04_A 21 LTWARDGTLYLTTFPDISIG----QPKYAKD-------------------------------------INCNSKNLFHVK 59 (588)
T ss_dssp EEECTTSCEEEECSSSEEEE----EECCCSC-------------------------------------CSSBGGGTEEEE
T ss_pred EEECCCCCEEEEEcCCceee----cccccce-------------------------------------ecCCCccEEEEE
Confidence 46778888999999999987 3322211 124455565544
Q ss_pred ecCCcceEEEEecCCcEEEEEecCCceEeeecccccee-cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeE
Q 001202 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIR 293 (1124)
Q Consensus 216 ~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~-~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~ 293 (1124)
++||| .++.+++|+....... .+|.+.| +++|||||++||+++.||+|++|+.+. ++.
T Consensus 60 ----------FsPdg-------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~ 119 (588)
T 2j04_A 60 ----------EFPLE-------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLT 119 (588)
T ss_dssp ----------EECCC-------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEE
T ss_pred ----------ECCCC-------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eee
Confidence 45777 4566666665433222 3677888 999999999999999999999999532 333
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCe-------eeEEe----ccCCcCceeeeEEcCCC
Q 001202 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-------LMSTI----RQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 294 ~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~-------l~~tl----~~h~~~~V~s~~~sp~~ 362 (1124)
.+. +... -....|.+++|||||++||+|+.||+|+|||+.++. .+.++ .+| .+.|.+++|+|++
T Consensus 120 ~l~-~~~~---~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh-~~~V~sVawSPdg 194 (588)
T 2j04_A 120 NLD-SKGN---LSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGS-KDWVTHIVWYEDV 194 (588)
T ss_dssp ECC-CSSC---STTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTC-CCCEEEEEEETTE
T ss_pred ecc-CCCc---cccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccc-cccEEEEEEcCCc
Confidence 333 1100 002369999999999999999999999999999885 36777 455 6899999999984
Q ss_pred CCCcceEEEee---eEEEEeCCCCeE---EEEe-cCCcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCC
Q 001202 363 DCKYEPLMSGT---SMMQWDEYGYRL---YAIE-EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (1124)
Q Consensus 363 ~~~~~~l~sg~---~i~~W~~~~~~l---~~~~-~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~ 434 (1124)
+++++ ++++|+..++.+ .... .+|...|..+.| ++.+++++ ++++++|++..+...
T Consensus 195 ------Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~--------- 258 (588)
T 2j04_A 195 ------LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSIS--------- 258 (588)
T ss_dssp ------EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEE---------
T ss_pred ------EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEE---------
Confidence 44444 999999998773 3344 477778855444 78888887 689999996543321
Q ss_pred ccceeeecccceeeccCCCceEEEEE--ccCCCEEEEEcCCCeEEEEc
Q 001202 435 DELKILHLNLPVSYISQNWPVQHVAA--SKDGMFLAVAGLHGLILYDI 480 (1124)
Q Consensus 435 ~~~~w~~~~~p~~~~~~~~~I~~va~--SpdG~~lAvag~dG~vlwd~ 480 (1124)
....+|...|..++| ||||+.+++|+++|+-+|..
T Consensus 259 -----------~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~ 295 (588)
T 2j04_A 259 -----------SLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLE 295 (588)
T ss_dssp -----------EEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEES
T ss_pred -----------EEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEee
Confidence 112279999999999 99999999999999855665
No 104
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.89 E-value=1.5e-21 Score=231.23 Aligned_cols=255 Identities=11% Similarity=0.213 Sum_probs=207.7
Q ss_pred EEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeecc
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~ 299 (1124)
.++..||+.+++++.|+++++||..+++.. .+|.+.| ++++ ++++|++|+.||+|++||+.+ ++.+.++.
T Consensus 137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~--- 210 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT-GEMLNTLI--- 210 (435)
T ss_dssp EEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS-CCEEEEEC---
T ss_pred EEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC-CcEEEEEc---
Confidence 344568999999999999999998876543 6899999 8887 788999999999999999998 77777776
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeee---EEeccCCcCceeeeEEcCCCCCCcceEEEee---
Q 001202 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM---STIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (1124)
Q Consensus 300 ~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~---~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~--- 373 (1124)
+ |.+.|.+++|++ ..+++|+.||+|++||+.++... ..+.+| ...|.++++ ++ +.+++|+
T Consensus 211 -~----h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~--~~----~~l~s~~~dg 276 (435)
T 1p22_A 211 -H----HCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDF--DD----KYIVSASGDR 276 (435)
T ss_dssp -C----CCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCC-SSCEEEEEE--ET----TEEEEEETTS
T ss_pred -C----CCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCC-CCcEEEEEe--CC----CEEEEEeCCC
Confidence 5 999999999974 59999999999999999887654 567777 678999988 44 6677776
Q ss_pred eEEEEeCCCCeEEEEecCCcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCC
Q 001202 374 SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (1124)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~ 452 (1124)
++++|+..++++.....+|...+.++.+ ++.+++++.|+++++|++..+.. ...+.+|.
T Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--------------------~~~~~~h~ 336 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC--------------------LRVLEGHE 336 (435)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCE--------------------EEEECCCS
T ss_pred eEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCE--------------------EEEEeCCc
Confidence 8999999999999999999999988888 88999999999999999876543 45667899
Q ss_pred CceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc----------EEEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeE
Q 001202 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK----------WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTY 521 (1124)
Q Consensus 453 ~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~----------wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~ 521 (1124)
.+|.++++ +|+++++|+.||.+ +||+.+++ ...+.. +. -.|.++.|.+..+++++ .+.
T Consensus 337 ~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--h~--~~v~~l~~~~~~l~s~s-----~Dg 405 (435)
T 1p22_A 337 ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE--HS--GRVFRLQFDEFQIVSSS-----HDD 405 (435)
T ss_dssp SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC--CS--SCCCCEEECSSCEEECC-----SSS
T ss_pred CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC--CC--CCeEEEEeCCCEEEEEe-----CCC
Confidence 99999998 89999999999999 99987653 222211 11 23567788888887763 334
Q ss_pred EEEEeeCC
Q 001202 522 ELLFYPRY 529 (1124)
Q Consensus 522 elrly~~~ 529 (1124)
.|++|+..
T Consensus 406 ~i~iwd~~ 413 (435)
T 1p22_A 406 TILIWDFL 413 (435)
T ss_dssp EEEEEC--
T ss_pred EEEEEECC
Confidence 89999874
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.5e-21 Score=224.44 Aligned_cols=240 Identities=12% Similarity=0.122 Sum_probs=187.3
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCC-CceeEEEeeccCCCCCCCCCCeEEEEECCC--CCEEEEEECCC
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSR 329 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~-~~~~~~l~~~~~g~~~~h~g~V~~lawSPD--G~~Lasgs~Dg 329 (1124)
.+|.+.| +++|+|++++||+|+.||+|++|++... ......+. + |.++|.+++|+|+ |++|++|+.||
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~----h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT----G----HEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC----C----CSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec----C----CCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 6899999 9999999999999999999999999741 34445555 4 9999999999988 99999999999
Q ss_pred cEEEEEcCCCe--eeEEeccCCcCceeeeEEcCC--CCCCcceEEEee---eEEEEeCCCCe--EEEEecCCcceEE--E
Q 001202 330 GLTVWSVSGCR--LMSTIRQISLSSISSPIVKPN--QDCKYEPLMSGT---SMMQWDEYGYR--LYAIEEGSSERVL--I 398 (1124)
Q Consensus 330 ~I~vWdv~~~~--l~~tl~~h~~~~V~s~~~sp~--~~~~~~~l~sg~---~i~~W~~~~~~--l~~~~~~~~~~v~--~ 398 (1124)
.|++||+.++. ....+.+| ...|.+++|+|+ + ..+++++ .+++|+..... ......+|...|. .
T Consensus 80 ~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~----~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~ 154 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYG----PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 154 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGC----SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred EEEEEEcCCCceeEeeeecCC-CcceEEEEeCCCCCC----CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence 99999999887 67777777 788999999998 6 7777776 89999998762 3334556777774 4
Q ss_pred Eec--------------cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccC-
Q 001202 399 FSF--------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD- 463 (1124)
Q Consensus 399 ~s~--------------~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~Spd- 463 (1124)
+++ ++.+++++.|+.+++|++..+.... .+...+.+|..+|.+++|+|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------~~~~~~~~h~~~v~~~~~sp~~ 218 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY----------------VLESTLEGHSDWVRDVAWSPTV 218 (379)
T ss_dssp ECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE----------------EEEEEECCCSSCEEEEEECCCC
T ss_pred EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce----------------eeEEEEecccCcEeEEEECCCC
Confidence 444 4678999999999999987655421 112456689999999999999
Q ss_pred --CCEEEEEcCCCeE-EEEcCCCc----EEEecCcCceeeeEEEEEEecC--CEEEEEEEecCCCeEEEEEeeCC
Q 001202 464 --GMFLAVAGLHGLI-LYDIRQKK----WRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 464 --G~~lAvag~dG~v-lwd~~sg~----wk~f~~~~~e~~~~v~gl~W~~--~~liv~~~~~~~~~~elrly~~~ 529 (1124)
|+++++++.||.+ +||+.++. ...+....+ ...+..+.|.+ .++++++. + ..+++|+..
T Consensus 219 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~---d--g~i~iw~~~ 286 (379)
T 3jrp_A 219 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF--PDVLWRASWSLSGNVLALSGG---D--NKVTLWKEN 286 (379)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC--SSCEEEEEECSSSCCEEEEES---S--SSEEEEEEE
T ss_pred CCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccC--CCcEEEEEEcCCCCEEEEecC---C--CcEEEEeCC
Confidence 9999999999999 99998873 223222212 23477888864 46666643 2 368899763
No 106
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=3.3e-21 Score=216.26 Aligned_cols=183 Identities=11% Similarity=0.083 Sum_probs=145.2
Q ss_pred cCCCEEEEEe--cCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECC---CCCEEEEEECCCcEEEEEcCCCe
Q 001202 266 PEQQILAVGT--RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP---DNSAFAVGWKSRGLTVWSVSGCR 340 (1124)
Q Consensus 266 pdg~lLAsGs--~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP---DG~~Lasgs~Dg~I~vWdv~~~~ 340 (1124)
++++++.+++ .|++|++|++...++.+..+. + |...|+.++|+| ||.+||+|+.|++|+|||+.+++
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~----~----~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk 214 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF----L----MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ 214 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE----E----CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceeeeec----c----CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc
Confidence 5677777754 699999999976577777666 4 888899999999 78999999999999999999999
Q ss_pred eeEEeccCC--cCceeeeEEcCCCCCCcceE------------EEee---eEEEEeCCCCeEEEEe-----cCCcceEEE
Q 001202 341 LMSTIRQIS--LSSISSPIVKPNQDCKYEPL------------MSGT---SMMQWDEYGYRLYAIE-----EGSSERVLI 398 (1124)
Q Consensus 341 l~~tl~~h~--~~~V~s~~~sp~~~~~~~~l------------~sg~---~i~~W~~~~~~l~~~~-----~~~~~~v~~ 398 (1124)
++.++.+|+ ...+.+++|+|++ ..+ ++|+ ++++|++.+++++.+. .+|...++.
T Consensus 215 ~l~tL~g~~~~v~~v~~vafSpdG----~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~ls 290 (356)
T 2w18_A 215 LLKKMHIDDSYQASVCHKAYSEMG----LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLE 290 (356)
T ss_dssp EEEEEECCC---CCCEEEEEEETT----EEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEE
T ss_pred EEEEEcCCCcceeeeEEEEECCCC----CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEc
Confidence 999998753 2357777899988 443 5565 8999999999887654 466666655
Q ss_pred Eec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCce-EEEEEccCCCEEEEEcCCCeE
Q 001202 399 FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV-QHVAASKDGMFLAVAGLHGLI 476 (1124)
Q Consensus 399 ~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I-~~va~SpdG~~lAvag~dG~v 476 (1124)
.++ +..+++++.|+++++||+..+.. ..++.+|...+ .+++|||||++||+|+.||+|
T Consensus 291 g~~sg~~lASgS~DgTIkIWDl~tGk~--------------------l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI 350 (356)
T 2w18_A 291 GDVKDHCAAAILTSGTIAIWDLLLGQC--------------------TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI 350 (356)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCSE--------------------EEEECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred cccCCCEEEEEcCCCcEEEEECCCCcE--------------------EEEecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 555 67889999999999999877665 45667776654 468999999999999999999
Q ss_pred -EEEc
Q 001202 477 -LYDI 480 (1124)
Q Consensus 477 -lwd~ 480 (1124)
+||+
T Consensus 351 klWd~ 355 (356)
T 2w18_A 351 FVYHY 355 (356)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 9985
No 107
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.89 E-value=1.9e-21 Score=225.95 Aligned_cols=316 Identities=15% Similarity=0.160 Sum_probs=216.2
Q ss_pred CceEeeeccccce---ecCCCCeE-EEEEcc-CCCEEEEEecCCeEEEEEcCCCCceeEEEeec-----cCCCCCCCCCC
Q 001202 240 KGLKLAEFIKIDK---ELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLY-----DWGYSMDDTGP 309 (1124)
Q Consensus 240 ~~i~~wd~~~~~~---~~gh~~~v-~va~sp-dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~-----~~g~~~~h~g~ 309 (1124)
.++++|+....+. ..+|.+.| |++|+| ++++||+|+.||+|++|++.+ +.....+... ......+|.++
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLEN-SSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCC-CSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred CcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCC-CcccceEeccccccccccccccCCCc
Confidence 3455665544322 26899999 999999 999999999999999999987 4332222110 00111249999
Q ss_pred eEEEEECC-CCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeE
Q 001202 310 VSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL 385 (1124)
Q Consensus 310 V~~lawSP-DG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l 385 (1124)
|.+++|+| ++..|++|+.||.|++||+.++.....+.. ...+.++.++|.+. ....+++|. .+.+|+..+++.
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~d~~~~~~ 178 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF--EETVYSHHMSPVST-KHCLVAVGTRGPKVQLCDLKSGSC 178 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECSSCS-SCCEEEEEESSSSEEEEESSSSCC
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC--CCceeeeEeecCCC-CCcEEEEEcCCCeEEEEeCCCcce
Confidence 99999999 788999999999999999999998888763 46789999988652 114666665 899999999988
Q ss_pred EEEecCCcceEEEEec---cc-eEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEc
Q 001202 386 YAIEEGSSERVLIFSF---GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAAS 461 (1124)
Q Consensus 386 ~~~~~~~~~~v~~~s~---~k-~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S 461 (1124)
.....+|...|..+.+ ++ .+++++.|+.+++|++..+...+.......... .........+|..+|.+++|+
T Consensus 179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK----SQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS----CCCTTTSSCSCSSCEEEEEEC
T ss_pred eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc----ceeeccccccccCceeEEEEc
Confidence 8888888888855554 55 488999999999999877654333222211100 001122345788999999999
Q ss_pred cCCCEEEEEcCCCeE-EEEcCCCcEEEecC-cCceeeeE--EEEEEe-cCCEEEEEEEecCCCeEEEEEeeCCCCCCcce
Q 001202 462 KDGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQ--SKGLLW-LGKIIVVCNYIDSSNTYELLFYPRYHLDQSSL 536 (1124)
Q Consensus 462 pdG~~lAvag~dG~v-lwd~~sg~wk~f~~-~~~e~~~~--v~gl~W-~~~~liv~~~~~~~~~~elrly~~~~ld~~~~ 536 (1124)
|+|+++++++.||.+ +||+.+++...... ........ ...... ....+++++. + ..+++|+.. +...
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~i~v~d~~---~~~~ 326 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY---G--STIAVYTVY---SGEQ 326 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE---T--TEEEEEETT---TCCE
T ss_pred CCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec---C--CEEEEEECc---CCcc
Confidence 999999999999999 99999876322111 00000000 111112 2334444433 2 279999874 2223
Q ss_pred EEEee-cCCcc--EEEEeeCCEEEEEEcCCeEEEEEEE
Q 001202 537 LCRKS-LLAKP--IVMDVYEDYILVTYRPFDVHIFHVK 571 (1124)
Q Consensus 537 l~~~~-l~s~~--l~l~~~~~~llv~~~d~~i~l~~~~ 571 (1124)
+.... ....+ +.+++.+..++.++.|+.|++|++.
T Consensus 327 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 327 ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred eeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence 33322 22333 4556777888889999999999986
No 108
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.89 E-value=3e-21 Score=222.70 Aligned_cols=292 Identities=9% Similarity=0.071 Sum_probs=185.9
Q ss_pred hhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeE
Q 001202 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~l 145 (1124)
+.+.+.+++|||||++||+++.+| +++|++....... ... . ....+.++.++++.+
T Consensus 18 h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~-----------------~~~----~--~~~~~~~~~~~~~~~ 73 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM-----------------SQE----M--RHLSKVRMLHRTNYV 73 (355)
T ss_dssp -CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE-----------------EEE----C--SCCCEEEECTTSSEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee-----------------eee----c--CCeEEEEEcCCCCEE
Confidence 346788999999999999998776 6899976432110 000 0 112344555666666
Q ss_pred -EEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEE
Q 001202 146 -LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1124)
Q Consensus 146 -lv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~ 224 (1124)
++++.++.+++ ||........ .......|.++.+++.
T Consensus 74 ~~~~~~d~~v~i--Wd~~~~~~~~-----------------------------------~~~~~~~v~~v~~~~~----- 111 (355)
T 3vu4_A 74 AFVTGVKEVVHI--WDDVKKQDVS-----------------------------------RIKVDAPVKDLFLSRE----- 111 (355)
T ss_dssp EEECSSTTEEEE--EETTTTEEEE-----------------------------------EEECSSCEEEEEECSS-----
T ss_pred EEEECCccEEEE--EECCCCcEEE-----------------------------------EEECCCceEEEEEcCC-----
Confidence 45667788887 5543322210 0012345666666543
Q ss_pred EEecCCcEEEEEecCCceEeeecccc-ceecCCCCeE-EEEEccCCCEEEE--EecCCeEEEEEcCCCCc----------
Q 001202 225 VLYSNGQLMSCSVSKKGLKLAEFIKI-DKELGSGDAV-CASIAPEQQILAV--GTRRGVVELYDLAESAS---------- 290 (1124)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~wd~~~~-~~~~gh~~~v-~va~spdg~lLAs--Gs~DgtV~vwd~~~~~~---------- 290 (1124)
+ +++ ..++.+++|+..+. +......... .+++++ .++|+ |+.||+|++||+.+ +.
T Consensus 112 -----~--~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~-~~~~~~~~~~~~ 180 (355)
T 3vu4_A 112 -----F--IVV-SYGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQS-SGSATTQDQGVQ 180 (355)
T ss_dssp -----E--EEE-EETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------
T ss_pred -----E--EEE-EEcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEEEECCC-CCcccccccccc
Confidence 2 222 23667889998766 3331111144 667888 56666 68999999999986 33
Q ss_pred ------eeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCc-EEEEEcCCCeeeEEec-cCCcCceeeeEEcCCC
Q 001202 291 ------LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG-LTVWSVSGCRLMSTIR-QISLSSISSPIVKPNQ 362 (1124)
Q Consensus 291 ------~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~-I~vWdv~~~~l~~tl~-~h~~~~V~s~~~sp~~ 362 (1124)
....+. + |.++|.+++|+|||++||+|+.||+ |++||+.+++++.++. +++...|.+++|+|++
T Consensus 181 ~~~~~p~~~~~~----~----h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~ 252 (355)
T 3vu4_A 181 QKAILGKGVLIK----A----HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG 252 (355)
T ss_dssp ------CCEEEC----C----CSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTS
T ss_pred ccccCcccEEEE----c----cCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC
Confidence 134444 4 9999999999999999999999998 9999999999999998 5237899999999998
Q ss_pred CCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCcccee
Q 001202 363 DCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (1124)
Q Consensus 363 ~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w 439 (1124)
..+++|+ ++++|+......- .. ..+. ..+.....+ ..|.+..
T Consensus 253 ----~~l~s~s~d~~v~iw~~~~~~~~------~~--~~~~--~~~~~~~~~---~~~~~~~------------------ 297 (355)
T 3vu4_A 253 ----SKLAVVSDKWTLHVFEIFNDQDN------KR--HALK--GWINMKYFQ---SEWSLCN------------------ 297 (355)
T ss_dssp ----CEEEEEETTCEEEEEESSCCSCC------CS--EETT--TTEECCCCC---CSSCSEE------------------
T ss_pred ----CEEEEEECCCEEEEEEccCCCCc------cc--cccc--ceeeccccc---cccceeE------------------
Confidence 7888776 7888887654210 00 0000 000000000 0111000
Q ss_pred eecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC
Q 001202 440 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 440 ~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s 482 (1124)
..++. .+..+...++|++||+++++++.||.+ +|++..
T Consensus 298 --~~~~~---~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 298 --FKLSV---DKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp --EECCC---CTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred --EEecc---CCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 00111 122344669999999999999999999 998754
No 109
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.88 E-value=8e-21 Score=217.14 Aligned_cols=277 Identities=11% Similarity=0.082 Sum_probs=196.2
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccc-cce----ecCCCCeE-EEEEccCCCEEEEEecC
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK-IDK----ELGSGDAV-CASIAPEQQILAVGTRR 277 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~-~~~----~~gh~~~v-~va~spdg~lLAsGs~D 277 (1124)
...|...|.++.|+|+. .+|+++++++.|+.+++|+..+ ... ..+|...+ +++|+|++++||+|+.|
T Consensus 35 ~~~h~~~v~~~~~~~~~-------~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPT-------LPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp SSCCSSCEEEEEECCTT-------SSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred ccCCCCceEEEEEcCCC-------CCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 45778889888887432 2278999999999999999876 322 26799999 99999999999999999
Q ss_pred CeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEE--CCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceee
Q 001202 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW--TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISS 355 (1124)
Q Consensus 278 gtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~law--SPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s 355 (1124)
|+|++||+.+ +....... |.++|.+++| +|+|.+|++|+.||.|++||+.+++++.++..+ ..+.+
T Consensus 108 g~v~iwd~~~-~~~~~~~~---------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~ 175 (368)
T 3mmy_A 108 KTAKMWDLSS-NQAIQIAQ---------HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP--ERCYC 175 (368)
T ss_dssp SEEEEEETTT-TEEEEEEE---------CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS--SCEEE
T ss_pred CcEEEEEcCC-CCceeecc---------ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC--CCceE
Confidence 9999999987 66555433 8999999999 999999999999999999999999988888876 35566
Q ss_pred eEEcCCCCCCcceEEEee-eEEEEeCCCCeEEEEec----CCcceEEEEec-cc----eEEeeccCCceeeeEeeecCC-
Q 001202 356 PIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE----GSSERVLIFSF-GK----CCLNRGVSGMTYARQVIYGED- 424 (1124)
Q Consensus 356 ~~~sp~~~~~~~~l~sg~-~i~~W~~~~~~l~~~~~----~~~~~v~~~s~-~k----~~~s~s~d~~v~~w~l~~~~~- 424 (1124)
+.+.++. -.+.++. .+.+|+........... .+...+..+.+ .. .+++++.|+.+++|++.....
T Consensus 176 ~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 251 (368)
T 3mmy_A 176 ADVIYPM----AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA 251 (368)
T ss_dssp EEEETTE----EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH
T ss_pred EEecCCe----eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc
Confidence 6555432 2222222 88999998754433321 22333444443 22 289999999999999865532
Q ss_pred -eEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEE-EecCcCceeeeEEEE
Q 001202 425 -RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKG 501 (1124)
Q Consensus 425 -~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk-~f~~~~~e~~~~v~g 501 (1124)
.+....++.. ........+|..+|.+++|+|+|++|++|+.||.+ +||+.+++.. .+. .+ ...+..
T Consensus 252 ~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~--~~~v~~ 320 (368)
T 3mmy_A 252 KDNFTFKCHRS-------NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE--QL--DQPISA 320 (368)
T ss_dssp HHSEEEECSEE-------C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC--CC--SSCEEE
T ss_pred ccceeeeeeec-------ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec--CC--CCCceE
Confidence 1111111000 00011122344489999999999999999999999 9999987643 222 12 234778
Q ss_pred EEecC--CEEEEEEE
Q 001202 502 LLWLG--KIIVVCNY 514 (1124)
Q Consensus 502 l~W~~--~~liv~~~ 514 (1124)
++|.+ .++++++.
T Consensus 321 ~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 321 CCFNHNGNIFAYASS 335 (368)
T ss_dssp EEECTTSSCEEEEEC
T ss_pred EEECCCCCeEEEEec
Confidence 88964 46776654
No 110
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.88 E-value=6.2e-21 Score=215.43 Aligned_cols=289 Identities=12% Similarity=0.108 Sum_probs=189.9
Q ss_pred hhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEee----c
Q 001202 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS----D 141 (1124)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~----d 141 (1124)
+.+.+.+++|+|||++||+++.||.|++|++..+.... .....+.++...|.+++. +
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~d 70 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW-------------------ELSDSWRAHDSSIVAIDWASPEY 70 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE-------------------EEEEEEECCSSCEEEEEECCGGG
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc-------------------eecceeccCCCcEEEEEEcCCCC
Confidence 45778999999999999999999999999997543210 001122334556776654 4
Q ss_pred CCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcc
Q 001202 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (1124)
Q Consensus 142 ~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~ 221 (1124)
+..+++++.||.|++|+.+........ .. .........+...|.++.|+
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~-------------------~~--------~~~~~~~~~~~~~v~~~~~~---- 119 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSG-------------------RR--------WNKLCTLNDSKGSLYSVKFA---- 119 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSS-------------------CS--------EEEEEEECCCSSCEEEEEEC----
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccc-------------------cC--------cceeeeecccCCceeEEEEc----
Confidence 678899999999998665533211000 00 00001233566777776666
Q ss_pred eEEEEecC--CcEEEEEecCCceEeeecccccee----------------cCCCCeE-EEEEccC---CCEEEEEecCCe
Q 001202 222 LLFVLYSN--GQLMSCSVSKKGLKLAEFIKIDKE----------------LGSGDAV-CASIAPE---QQILAVGTRRGV 279 (1124)
Q Consensus 222 ~~~~~s~d--G~~~~~~~~d~~i~~wd~~~~~~~----------------~gh~~~v-~va~spd---g~lLAsGs~Dgt 279 (1124)
|+ |+.+++++.|+.+++||..+++.. .+|...+ +++|+|+ +.++++|+.|+.
T Consensus 120 ------~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 193 (351)
T 3f3f_A 120 ------PAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA 193 (351)
T ss_dssp ------CGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE
T ss_pred ------CCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc
Confidence 66 888999999999999998765432 1577777 9999997 999999999999
Q ss_pred EEEEEcCCCCce--eEEEeeccCCCCCCCCCCeEEEEECCCC----CEEEEEECCCcEEEEEcCCCeeeEEeccCCcCce
Q 001202 280 VELYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDN----SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 353 (1124)
Q Consensus 280 V~vwd~~~~~~~--~~~l~~~~~g~~~~h~g~V~~lawSPDG----~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V 353 (1124)
+.+|+... +.. ...+. + |.++|.+++|+|+| .+|++|+.||.|++||+.++........+ ...+
T Consensus 194 ~~~~~~~~-~~~~~~~~~~----~----h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~ 263 (351)
T 3f3f_A 194 IIYQRGKD-GKLHVAAKLP----G----HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEES-LTNS 263 (351)
T ss_dssp EEEEECTT-SCEEEEEECC----C----CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------
T ss_pred EEEEccCC-CceeeeeecC----C----CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCc-ccce
Confidence 98887765 443 33333 4 99999999999998 89999999999999999876443333222 1112
Q ss_pred eeeEEcCCCCCCcceEEEee-------eEEEEeCCCCeEEEEecCCcceEEEEec---cceEEeeccCCceeeeEeeecC
Q 001202 354 SSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGE 423 (1124)
Q Consensus 354 ~s~~~sp~~~~~~~~l~sg~-------~i~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~ 423 (1124)
.....++.. ....++. ....|+....+++....+|...|..+.+ ++.+++++.|+.+++|++..+.
T Consensus 264 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 264 NMFDNSADV----DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp -------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred eccCCCccc----ccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 222222221 1111111 4456666667788888899988955554 7889999999999999987655
Q ss_pred C
Q 001202 424 D 424 (1124)
Q Consensus 424 ~ 424 (1124)
.
T Consensus 340 ~ 340 (351)
T 3f3f_A 340 E 340 (351)
T ss_dssp C
T ss_pred c
Confidence 4
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.9e-20 Score=221.44 Aligned_cols=273 Identities=14% Similarity=0.060 Sum_probs=191.9
Q ss_pred CceEEEEeeCCeEEEEEcCCcEEEEecCCCce---eEEEEeeChH---------------H-------------------
Q 001202 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKV---RLGKYKRDSE---------------S------------------- 63 (1124)
Q Consensus 21 ~~~iv~fS~dg~llA~~~~~~l~IW~~~~~~~---~l~~~~r~~~---------------s------------------- 63 (1124)
+-..+.|||||++++++.++.|.+|+.. .+. .+........ .
T Consensus 6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAIIKNCILSFKYQ-SPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCEEEECSSSSEEEEEETTEEEEEEEE-TTTEEEEEEEEECCC------------------------------------
T ss_pred cEEEEEecCCCCEEEEEeCCeEEEEECC-CCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 4456889999999888888999999985 554 4443331110 0
Q ss_pred --------------HhhhcceeEEEEecCCcEE-EEEeCCCeEEEEEee--ecCceeecCCCCCCCcceeeEEEEeeeee
Q 001202 64 --------------VQREGENLQAVWSPDTKLI-AVVTSSLYLHIFKVQ--ITEKSIQIGGKQPSGLFFIKISLVLNEQL 126 (1124)
Q Consensus 64 --------------l~~~G~~~~v~wSPDg~~L-av~t~dg~l~i~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1124)
-.+.+.+.+++|+|||++| |+++.||.|++|++. .+... ..+. .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~-------------~~~~----~-- 145 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL-------------KLRK----R-- 145 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE-------------EEEE----E--
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee-------------eeee----c--
Confidence 0012357899999999996 889899999999997 33211 1100 0
Q ss_pred ecccccceEEE--EeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeeccc
Q 001202 127 PFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHK 204 (1124)
Q Consensus 127 ~~~~~~~~v~~--i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~ 204 (1124)
......|++ +.+++..+++++.+|.+..+........... ...+
T Consensus 146 --~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~--------------------------------~~~~ 191 (450)
T 2vdu_B 146 --FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT--------------------------------QEPI 191 (450)
T ss_dssp --EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCC--------------------------------CCCS
T ss_pred --ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccccc--------------------------------ceee
Confidence 011223444 4557788999999999877543221110000 0012
Q ss_pred CCCCceEEEEEecCCcceEEEEecC---CcEEEEEecCCceEeeecccccee----cCCCCeE-EEEEccCCCEEEEEec
Q 001202 205 FPISSAIIWLELCLPMRLLFVLYSN---GQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTR 276 (1124)
Q Consensus 205 ~~~~~~I~~i~~s~~~~~~~~~s~d---G~~~~~~~~d~~i~~wd~~~~~~~----~gh~~~v-~va~spdg~lLAsGs~ 276 (1124)
..+...|.++.|+ || |+++++++.|+++++||..+++.. .+|...+ +++|+ ++++|++|+.
T Consensus 192 ~~h~~~v~~~~~s----------p~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~ 260 (450)
T 2vdu_B 192 LGHVSMLTDVHLI----------KDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGG 260 (450)
T ss_dssp EECSSCEEEEEEE----------ECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEES
T ss_pred ecccCceEEEEEc----------CCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeC
Confidence 3455667665555 77 889999999999999998876532 4899999 99999 9999999999
Q ss_pred CCeEEEEEcCCCCceeEEEeeccC--CC---------------CCCCCCCeEEEEECCCCCEEEEEE-CCCcEEEEEc--
Q 001202 277 RGVVELYDLAESASLIRTVSLYDW--GY---------------SMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSV-- 336 (1124)
Q Consensus 277 DgtV~vwd~~~~~~~~~~l~~~~~--g~---------------~~~h~g~V~~lawSPDG~~Lasgs-~Dg~I~vWdv-- 336 (1124)
||+|++||+.+ ++.+.++..... .+ ...+...|.+++|+|||++|++++ .|+.|++|++
T Consensus 261 d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~ 339 (450)
T 2vdu_B 261 DDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSE 339 (450)
T ss_dssp SSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECS
T ss_pred CCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEecc
Confidence 99999999998 777777653210 00 002346799999999999999999 8999999999
Q ss_pred CCC---eeeEEeccCCcCceeeeEEcCC
Q 001202 337 SGC---RLMSTIRQISLSSISSPIVKPN 361 (1124)
Q Consensus 337 ~~~---~l~~tl~~h~~~~V~s~~~sp~ 361 (1124)
.++ ..+.++.++ ..+.+++|+|+
T Consensus 340 ~~~~~l~~~~~~~~~--~~v~~~~~~~~ 365 (450)
T 2vdu_B 340 KQKGDLALKQIITFP--YNVISLSAHND 365 (450)
T ss_dssp SSTTCEEEEEEEECS--SCEEEEEEETT
T ss_pred CCCCceeeccEeccC--CceEEEEecCC
Confidence 555 667777776 57888888885
No 112
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6.9e-21 Score=226.75 Aligned_cols=258 Identities=10% Similarity=0.011 Sum_probs=183.1
Q ss_pred CCCeE-EEEEccCCCEE-EEEecCCeEEEEEcC--CCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcE
Q 001202 256 SGDAV-CASIAPEQQIL-AVGTRRGVVELYDLA--ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (1124)
Q Consensus 256 h~~~v-~va~spdg~lL-AsGs~DgtV~vwd~~--~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I 331 (1124)
|.+.| +++|+|++++| |+|+.||+|++|++. + +..+..+... + |.+.|.+++|+|||.+|++|+.||.+
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~-~~~~~~~~~~--~----~~~~v~~~~~sp~~~~l~~~~~~g~v 173 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS-KNVLKLRKRF--C----FSKRPNAISIAEDDTTVIIADKFGDV 173 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS-SSCEEEEEEE--E----CSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC-Cceeeeeecc--c----CCCCceEEEEcCCCCEEEEEeCCCcE
Confidence 44468 99999999996 999999999999998 5 6666666421 2 67889999999999999999999999
Q ss_pred EEEEcCCCeeeE----EeccCCcCceeeeEEcCC---CCCCcceEEEee---eEEEEeCCCCeEEEE-ecCCcceEEEEe
Q 001202 332 TVWSVSGCRLMS----TIRQISLSSISSPIVKPN---QDCKYEPLMSGT---SMMQWDEYGYRLYAI-EEGSSERVLIFS 400 (1124)
Q Consensus 332 ~vWdv~~~~l~~----tl~~h~~~~V~s~~~sp~---~~~~~~~l~sg~---~i~~W~~~~~~l~~~-~~~~~~~v~~~s 400 (1124)
++|++.++.... ++.+| ...|++++|+|+ + ..+++|+ ++++|+..++++... ..+|...|..+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~----~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~ 248 (450)
T 2vdu_B 174 YSIDINSIPEEKFTQEPILGH-VSMLTDVHLIKDSDGH----QFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSIC 248 (450)
T ss_dssp EEEETTSCCCSSCCCCCSEEC-SSCEEEEEEEECTTSC----EEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEE
T ss_pred EEEecCCcccccccceeeecc-cCceEEEEEcCCCCCC----cEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEE
Confidence 999998776543 66777 678999999999 6 7888877 899999998887766 568888887666
Q ss_pred c--cceEEeeccCCceeeeEeeecCCeEEEeecCC-Cccce--eeecc---cceeeccCCCceEEEEEccCCCEEEEEc-
Q 001202 401 F--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED-TDELK--ILHLN---LPVSYISQNWPVQHVAASKDGMFLAVAG- 471 (1124)
Q Consensus 401 ~--~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~-~~~~~--w~~~~---~p~~~~~~~~~I~~va~SpdG~~lAvag- 471 (1124)
+ ++.+++++.|+++++|++..+... ....... ..... ++... .+.........|..++++|+|+++++++
T Consensus 249 ~sd~~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 327 (450)
T 2vdu_B 249 CGKDYLLLSAGGDDKIFAWDWKTGKNL-STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE 327 (450)
T ss_dssp ECSTTEEEEEESSSEEEEEETTTCCEE-EEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET
T ss_pred ECCCCEEEEEeCCCeEEEEECCCCcEe-eeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC
Confidence 6 788999999999999998765532 1111100 00000 00000 0000112345799999999999999999
Q ss_pred CCCeE-EEEc--CC-CcEEEecCcCceeeeEEEEEEecCCEEEEEEEecCC---CeEEEEEeeC
Q 001202 472 LHGLI-LYDI--RQ-KKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSS---NTYELLFYPR 528 (1124)
Q Consensus 472 ~dG~v-lwd~--~s-g~wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~---~~~elrly~~ 528 (1124)
.+|.+ +|++ .+ ++++........ ..+.+++|.++.++++...... ....|++|..
T Consensus 328 ~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 328 ATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp TCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred CCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 89999 9999 44 333332211111 2477899988776665443211 1334666755
No 113
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.88 E-value=2.2e-20 Score=213.43 Aligned_cols=271 Identities=15% Similarity=0.171 Sum_probs=182.6
Q ss_pred CCceE--EEEeeC---CeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEE
Q 001202 20 SSQQI--IYFKVN---NGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHI 93 (1124)
Q Consensus 20 ~~~~i--v~fS~d---g~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i 93 (1124)
+...| ++|+|+ |.+||+++ ++.|+||+....+..+..... .+.+.+.+++|+||+++|++++.||.|++
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ-----MHTGPVLDVCWSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE-----ECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec-----cccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence 34444 889999 68998877 568999999632443322211 13577889999999999999999999999
Q ss_pred EEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEe----ecCCeEEEEecCCcEEEEeccCccccceee
Q 001202 94 FKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV----SDNKHMLLGLSDGSLYSISWKGEFYGAFEL 169 (1124)
Q Consensus 94 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~----~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l 169 (1124)
||+..+.... +..+...|.++. +++..+++++.||.+++| +........
T Consensus 113 wd~~~~~~~~------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw--d~~~~~~~~- 165 (368)
T 3mmy_A 113 WDLSSNQAIQ------------------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW--DTRSSNPMM- 165 (368)
T ss_dssp EETTTTEEEE------------------------EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEE--CSSCSSCSE-
T ss_pred EEcCCCCcee------------------------eccccCceEEEEEEeCCCCCEEEEccCCCcEEEE--ECCCCcEEE-
Confidence 9987542110 111233455554 345668889999999884 433221110
Q ss_pred ccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccc
Q 001202 170 VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK 249 (1124)
Q Consensus 170 ~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~ 249 (1124)
.... ...+.++.+ .+..++++..++.+.+|+...
T Consensus 166 ---------------------------------~~~~-~~~~~~~~~------------~~~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 166 ---------------------------------VLQL-PERCYCADV------------IYPMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp ---------------------------------EEEC-SSCEEEEEE------------ETTEEEEEEGGGCEEEEECSS
T ss_pred ---------------------------------EEec-CCCceEEEe------------cCCeeEEEeCCCcEEEEEecc
Confidence 0001 112323222 234566667777888888765
Q ss_pred ccee-----cCCCCeE-EEEEccCCCE----EEEEecCCeEEEEEcCCCC--ceeEEEeeccCC----CCCCCCCCeEEE
Q 001202 250 IDKE-----LGSGDAV-CASIAPEQQI----LAVGTRRGVVELYDLAESA--SLIRTVSLYDWG----YSMDDTGPVSCI 313 (1124)
Q Consensus 250 ~~~~-----~gh~~~v-~va~spdg~l----LAsGs~DgtV~vwd~~~~~--~~~~~l~~~~~g----~~~~h~g~V~~l 313 (1124)
.... ..+.... ++++.++... +++|+.||.|++|+++... .....+..+... ....|..+|.++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 279 (368)
T 3mmy_A 200 QPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGI 279 (368)
T ss_dssp SCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEE
T ss_pred ccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEE
Confidence 4221 2233344 6666665544 9999999999999998732 344555511100 001123379999
Q ss_pred EECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee
Q 001202 314 AWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1124)
Q Consensus 314 awSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~ 373 (1124)
+|+|||++|++|+.||.|++||+.++.++.++.+| ...|++++|+|++ ..+++|+
T Consensus 280 ~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g----~~l~~~s 334 (368)
T 3mmy_A 280 AFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL-DQPISACCFNHNG----NIFAYAS 334 (368)
T ss_dssp EECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSCEEEEEECTTS----SCEEEEE
T ss_pred EEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC-CCCceEEEECCCC----CeEEEEe
Confidence 99999999999999999999999999999999988 7889999999998 7888765
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.5e-21 Score=246.08 Aligned_cols=251 Identities=16% Similarity=0.103 Sum_probs=195.4
Q ss_pred cCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccc--cce---ecCCCCeE-EEEEccC--CCEEEEEe
Q 001202 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK--IDK---ELGSGDAV-CASIAPE--QQILAVGT 275 (1124)
Q Consensus 204 ~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~--~~~---~~gh~~~v-~va~spd--g~lLAsGs 275 (1124)
+.+|...|.++.|+ |||+++++++.|+++++|+... .+. ..+|.+.| +++|+|+ +++|++|+
T Consensus 5 l~gH~~~V~~l~~s----------~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s 74 (753)
T 3jro_A 5 ANAHNELIHDAVLD----------YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS 74 (753)
T ss_dssp ---CCCCEEEECCC----------SSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEE
T ss_pred cccCcceeEEEEEC----------CCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEe
Confidence 45778888887776 7888999999999999999863 222 26899999 9999998 99999999
Q ss_pred cCCeEEEEEcCCCCc--eeEEEeeccCCCCCCCCCCeEEEEECCC--CCEEEEEECCCcEEEEEcCCC--eeeEEeccCC
Q 001202 276 RRGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGC--RLMSTIRQIS 349 (1124)
Q Consensus 276 ~DgtV~vwd~~~~~~--~~~~l~~~~~g~~~~h~g~V~~lawSPD--G~~Lasgs~Dg~I~vWdv~~~--~l~~tl~~h~ 349 (1124)
.||+|++||+.+ +. ....+. + |.++|.+++|+|+ |..+++|+.||+|++||+.++ .....+.+|
T Consensus 75 ~Dg~I~vwd~~~-~~~~~~~~~~----~----h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~- 144 (753)
T 3jro_A 75 YDGKVLIWKEEN-GRWSQIAVHA----V----HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH- 144 (753)
T ss_dssp TTSCEEEEEEET-TEEEEEEEEC----C----CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC-
T ss_pred CCCeEEEEECCC-Cccccccccc----C----CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC-
Confidence 999999999987 54 333443 4 9999999999999 999999999999999999876 334455666
Q ss_pred cCceeeeEEcCCCC---------CCcceEEEee---eEEEEeCCCC----eEEEEecCCcceEEEEec------cceEEe
Q 001202 350 LSSISSPIVKPNQD---------CKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSSERVLIFSF------GKCCLN 407 (1124)
Q Consensus 350 ~~~V~s~~~sp~~~---------~~~~~l~sg~---~i~~W~~~~~----~l~~~~~~~~~~v~~~s~------~k~~~s 407 (1124)
...|.+++|+|... .....+++|+ ++++|+..++ .+.....+|...|..+.+ ++.+++
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence 77899999999410 0116777776 8999998766 566677888888855544 367899
Q ss_pred eccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC-CcE
Q 001202 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ-KKW 485 (1124)
Q Consensus 408 ~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s-g~w 485 (1124)
++.|+++++|++..+.... ........+|..+|.+++|+|+|+++++|+.||.+ +|++.+ ++|
T Consensus 225 ~s~Dg~I~iwd~~~~~~~~---------------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~ 289 (753)
T 3jro_A 225 VSQDRTCIIWTQDNEQGPW---------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 289 (753)
T ss_dssp EESSSCEEEEEESSSSSCC---------------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCC
T ss_pred EecCCEEEEecCCCCCCcc---------------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCc
Confidence 9999999999987754310 00122334688899999999999999999999999 999984 455
Q ss_pred EEec
Q 001202 486 RVFG 489 (1124)
Q Consensus 486 k~f~ 489 (1124)
...+
T Consensus 290 ~~~~ 293 (753)
T 3jro_A 290 EPAG 293 (753)
T ss_dssp BCCC
T ss_pred cccc
Confidence 5443
No 115
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.86 E-value=8.3e-20 Score=216.26 Aligned_cols=244 Identities=11% Similarity=0.134 Sum_probs=186.7
Q ss_pred eEEEEecC-CcEEEEEecCCceEeeeccc----------cce---ecCCCCeE-EEEEccCCC-EEEEEecCCeEEEEEc
Q 001202 222 LLFVLYSN-GQLMSCSVSKKGLKLAEFIK----------IDK---ELGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDL 285 (1124)
Q Consensus 222 ~~~~~s~d-G~~~~~~~~d~~i~~wd~~~----------~~~---~~gh~~~v-~va~spdg~-lLAsGs~DgtV~vwd~ 285 (1124)
..++++|+ ++++++++.++.+++|+..+ ... ..+|...+ +++|+|++. +|++|+.||+|++|++
T Consensus 132 ~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 211 (430)
T 2xyi_A 132 NRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI 211 (430)
T ss_dssp SEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEET
T ss_pred EEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeC
Confidence 44555676 67888888899999999875 221 26899888 999999998 9999999999999999
Q ss_pred CCCCce------eEEEeeccCCCCCCCCCCeEEEEECC-CCCEEEEEECCCcEEEEEcCCC---eeeEEeccCCcCceee
Q 001202 286 AESASL------IRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLSSISS 355 (1124)
Q Consensus 286 ~~~~~~------~~~l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I~vWdv~~~---~l~~tl~~h~~~~V~s 355 (1124)
...... ...+. + |.+.|.+++|+| ++..|++|+.||.|++||+.++ ..+.++..| ...|++
T Consensus 212 ~~~~~~~~~~~~~~~~~----~----h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~ 282 (430)
T 2xyi_A 212 NATPKEHRVIDAKNIFT----G----HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH-TAEVNC 282 (430)
T ss_dssp TSCCBGGGEEECSEEEC----C----CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC-SSCEEE
T ss_pred CCCCCCCceeccceeec----C----CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC-CCCeEE
Confidence 872221 22222 3 999999999999 6789999999999999999876 567777777 678999
Q ss_pred eEEcCCCCCCcc-eEEEee---eEEEEeCCC-CeEEEEecCCcceEEEEec---cc-eEEeeccCCceeeeEeeecCCeE
Q 001202 356 PIVKPNQDCKYE-PLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLIFSF---GK-CCLNRGVSGMTYARQVIYGEDRL 426 (1124)
Q Consensus 356 ~~~sp~~~~~~~-~l~sg~---~i~~W~~~~-~~l~~~~~~~~~~v~~~s~---~k-~~~s~s~d~~v~~w~l~~~~~~l 426 (1124)
++|+|++ . .+++|+ ++.+|+... .+.+....+|...|..+.+ ++ .+++++.|+.+++|++.......
T Consensus 283 i~~~p~~----~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~ 358 (430)
T 2xyi_A 283 LSFNPYS----EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358 (430)
T ss_dssp EEECSSC----TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred EEeCCCC----CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence 9999987 5 566766 899999987 5566677778888855544 43 58899999999999987633210
Q ss_pred EEeecCCCccceeeecccceeeccCCCceEEEEEccCCC-EEEEEcCCCeE-EEEcCCCc
Q 001202 427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 427 ~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~-~lAvag~dG~v-lwd~~sg~ 484 (1124)
.... ..-...++...+.+|..+|++++|+|+|+ ++++++.||.+ +|++..+.
T Consensus 359 ~~~~------~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 359 STED------AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp CHHH------HHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred Cccc------cccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 0000 00000112345567889999999999999 99999999999 99997654
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.85 E-value=1.7e-18 Score=200.98 Aligned_cols=269 Identities=12% Similarity=0.085 Sum_probs=187.9
Q ss_pred eEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEE-EEEeCCCeEEEEEeeecCceeecCCCC
Q 001202 32 GLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLI-AVVTSSLYLHIFKVQITEKSIQIGGKQ 109 (1124)
Q Consensus 32 ~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~L-av~t~dg~l~i~~v~~~~~~~~~~~~~ 109 (1124)
.++++++ +++|++|+.. .+..+.... .++.+.+++|+|||+.| ++++.++.|++||+..+......
T Consensus 3 ~l~vs~~~d~~v~v~d~~-~~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~---- 70 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVT-SNKVTATIP-------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV---- 70 (391)
T ss_dssp EEEEEETTTTEEEEEETT-TTEEEEEEE-------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE----
T ss_pred EEEEEcCCCCEEEEEECC-CCeEEEEee-------cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE----
Confidence 4566655 5689999996 554443332 34456899999999987 55668999999998654211000
Q ss_pred CCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEe-cCCcEEEEeccCccccceeeccCCCCccccccccccCCC
Q 001202 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN 188 (1124)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t-~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ 188 (1124)
.... .....++.++++.++++. .++.|++| +........
T Consensus 71 -----------------~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~--d~~~~~~~~-------------------- 110 (391)
T 1l0q_A 71 -----------------PAGS-SPQGVAVSPDGKQVYVTNMASSTLSVI--DTTSNTVAG-------------------- 110 (391)
T ss_dssp -----------------ECSS-SEEEEEECTTSSEEEEEETTTTEEEEE--ETTTTEEEE--------------------
T ss_pred -----------------ECCC-CccceEECCCCCEEEEEECCCCEEEEE--ECCCCeEEE--------------------
Confidence 0111 112234556677776665 56888875 433221110
Q ss_pred CcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEE-EEEecCCceEeeecccccee---cCCCCeEEEEE
Q 001202 189 GLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLM-SCSVSKKGLKLAEFIKIDKE---LGSGDAVCASI 264 (1124)
Q Consensus 189 ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~-~~~~~d~~i~~wd~~~~~~~---~gh~~~v~va~ 264 (1124)
.......+. .+++++||+.+ +++..++.+.+||..+++.. ..|....+++|
T Consensus 111 ---------------~~~~~~~~~----------~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 165 (391)
T 1l0q_A 111 ---------------TVKTGKSPL----------GLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAV 165 (391)
T ss_dssp ---------------EEECSSSEE----------EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEE
T ss_pred ---------------EEeCCCCcc----------eEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEE
Confidence 001112233 34555888866 56667899999998776543 34444449999
Q ss_pred ccCCCEE-EEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE---CCCcEEEEEcCCCe
Q 001202 265 APEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW---KSRGLTVWSVSGCR 340 (1124)
Q Consensus 265 spdg~lL-AsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs---~Dg~I~vWdv~~~~ 340 (1124)
+|+++.+ ++++.||+|++||+.+ ++....+. +.+.+.+++|+|||+.|++++ .|+.|++||+.+++
T Consensus 166 ~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 166 TPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK---------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE---------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred CCCCCEEEEEeCCCCEEEEEECCC-CeEEEEEe---------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence 9999877 6778899999999987 66666665 566799999999999999988 68999999999999
Q ss_pred eeEEeccCCcCceeeeEEcCCCCCCcceE-EEee---eEEEEeCCCCeEEEEecCCc
Q 001202 341 LMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT---SMMQWDEYGYRLYAIEEGSS 393 (1124)
Q Consensus 341 l~~tl~~h~~~~V~s~~~sp~~~~~~~~l-~sg~---~i~~W~~~~~~l~~~~~~~~ 393 (1124)
.+..+..+ ..+.+++|+|++ +.+ +++. .+.+|+..++++......+.
T Consensus 236 ~~~~~~~~--~~~~~~~~s~dg----~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 236 ITARIPVG--PDPAGIAVTPDG----KKVYVALSFXNTVSVIDTATNTITATMAVGK 286 (391)
T ss_dssp EEEEEECC--SSEEEEEECTTS----SEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred EEEEEecC--CCccEEEEccCC----CEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence 88888875 357889999998 655 5543 89999999999887765543
No 117
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=4.7e-20 Score=211.19 Aligned_cols=229 Identities=8% Similarity=0.027 Sum_probs=172.2
Q ss_pred ecCCcEEEEEecCCceEeeeccccceec-CCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCC--------CceeEEEe
Q 001202 227 YSNGQLMSCSVSKKGLKLAEFIKIDKEL-GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES--------ASLIRTVS 296 (1124)
Q Consensus 227 s~dG~~~~~~~~d~~i~~wd~~~~~~~~-gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~--------~~~~~~l~ 296 (1124)
..|++.+++++.|+++++||..+++... -..+.+ +++++|+ +++|+.|++|++|+.+.. +..+....
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 3688999999999999999988765431 112445 7788888 999999999999987631 22222222
Q ss_pred eccCCCCCCCCCCeEEEEECC--CCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee-
Q 001202 297 LYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT- 373 (1124)
Q Consensus 297 ~~~~g~~~~h~g~V~~lawSP--DG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~- 373 (1124)
.+ |.++|.+++|+| +|.++++|+.||+|++||+.++++......++...+++++|+|++ ..+++|+
T Consensus 122 ---~~----~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg----~~lasg~~ 190 (343)
T 3lrv_A 122 ---VD----SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS----LLLALYSP 190 (343)
T ss_dssp ---CC----CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS----CEEEEECT
T ss_pred ---cC----CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC----CEEEEEcC
Confidence 13 788999999999 999999999999999999999988777766656679999999998 8888876
Q ss_pred --eEEEEeCCCCeEE-EEecC-CcceEEEEec---cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccce
Q 001202 374 --SMMQWDEYGYRLY-AIEEG-SSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV 446 (1124)
Q Consensus 374 --~i~~W~~~~~~l~-~~~~~-~~~~v~~~s~---~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~ 446 (1124)
++++|+..+++.. ....+ |...|..+.| ++.+++++ ++++++|++..+... ....
T Consensus 191 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~-----------------~~~~ 252 (343)
T 3lrv_A 191 DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT-----------------LAYP 252 (343)
T ss_dssp TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC-----------------BSSC
T ss_pred CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc-----------------eeec
Confidence 9999999988876 66666 8888855544 77888888 559999998765441 0011
Q ss_pred eeccCCCceE--EEEEccCCCEEEEEcC-CCeE-EEEcCC--CcEEE
Q 001202 447 SYISQNWPVQ--HVAASKDGMFLAVAGL-HGLI-LYDIRQ--KKWRV 487 (1124)
Q Consensus 447 ~~~~~~~~I~--~va~SpdG~~lAvag~-dG~v-lwd~~s--g~wk~ 487 (1124)
.+..|..++. +++|+|+|++||+++. |+.+ +|++.+ +.|..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 253 TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe
Confidence 1222334444 6999999999999988 9999 999854 34554
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.85 E-value=1.7e-19 Score=208.09 Aligned_cols=291 Identities=13% Similarity=0.098 Sum_probs=192.1
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEE-EEEECCCcE
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKSRGL 331 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~L-asgs~Dg~I 331 (1124)
.+|.+.| |++|||||++||+|+.|| +++|++++ ........ .+.+..++|+++++.+ ++|+.|++|
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~-~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~d~~v 83 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHP-VAHIMSQE----------MRHLSKVRMLHRTNYVAFVTGVKEVV 83 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETT-EEEEEEEE----------CSCCCEEEECTTSSEEEEECSSTTEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCC-cceeeeee----------cCCeEEEEEcCCCCEEEEEECCccEE
Confidence 5788999 999999999999998775 78999876 54443322 2348889999999887 567788999
Q ss_pred EEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCC-eEEEEecCCcceEEEEeccceEEe-ec
Q 001202 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGY-RLYAIEEGSSERVLIFSFGKCCLN-RG 409 (1124)
Q Consensus 332 ~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~-~l~~~~~~~~~~v~~~s~~k~~~s-~s 409 (1124)
++||..+++++.++.. ...|.+++++++. ..+....++.+|+..++ +.+..... ...+.++++...+++ ++
T Consensus 84 ~iWd~~~~~~~~~~~~--~~~v~~v~~~~~~----~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~~~la~~sg~ 156 (355)
T 3vu4_A 84 HIWDDVKKQDVSRIKV--DAPVKDLFLSREF----IVVSYGDVISVFKFGNPWKRITDDIR-FGGVCEFSNGLLVYSNEF 156 (355)
T ss_dssp EEEETTTTEEEEEEEC--SSCEEEEEECSSE----EEEEETTEEEEEESSTTCCBSSCCEE-EEEEEEEETTEEEEEESS
T ss_pred EEEECCCCcEEEEEEC--CCceEEEEEcCCE----EEEEEcCEEEEEECCCCceeeEEecc-CCceEEEEccEEEEeCCC
Confidence 9999999999998874 4589999998864 33333348999999887 54433333 344566666333333 78
Q ss_pred cCCceeeeEeeecCCeEEEeecCCCccceeeeccc-ceeeccCCCceEEEEEccCCCEEEEEcCCCe-E-EEEcCCCcEE
Q 001202 410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL-PVSYISQNWPVQHVAASKDGMFLAVAGLHGL-I-LYDIRQKKWR 486 (1124)
Q Consensus 410 ~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~-p~~~~~~~~~I~~va~SpdG~~lAvag~dG~-v-lwd~~sg~wk 486 (1124)
.+|++++|++..+.... .. +.. ..-..++. ...+.+|..+|.+++|||||++||+|+.||+ + +||+.+++..
T Consensus 157 ~~g~v~iwd~~~~~~~~---~~-~~~-~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 157 NLGQIHITKLQSSGSAT---TQ-DQG-VQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV 231 (355)
T ss_dssp CTTCEEEEECCC-----------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred cCcEEEEEECCCCCccc---cc-ccc-ccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 99999999987654100 00 000 00000001 3467789999999999999999999999998 9 9999988643
Q ss_pred -EecCcCceeeeEEEEEEecC--CEEEEEEEecCCCeEEEEEeeCCC--CCCcce---------------EEEeecCC--
Q 001202 487 -VFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRYH--LDQSSL---------------LCRKSLLA-- 544 (1124)
Q Consensus 487 -~f~~~~~e~~~~v~gl~W~~--~~liv~~~~~~~~~~elrly~~~~--ld~~~~---------------l~~~~l~s-- 544 (1124)
.+....+. -.|..++|.+ .++++++. +..+++|+... ...... .....++.
T Consensus 232 ~~~~~g~h~--~~v~~~~~s~~~~~l~s~s~-----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (355)
T 3vu4_A 232 REFRRGLDR--ADVVDMKWSTDGSKLAVVSD-----KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDK 304 (355)
T ss_dssp EEEECTTCC--SCEEEEEECTTSCEEEEEET-----TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCT
T ss_pred EEEEcCCCC--CcEEEEEECCCCCEEEEEEC-----CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCC
Confidence 23211122 3477888865 45666532 34899998741 111000 00111111
Q ss_pred ----ccEEEEeeCCEEEEEEcCCeEEEEEEEEecc
Q 001202 545 ----KPIVMDVYEDYILVTYRPFDVHIFHVKLFGE 575 (1124)
Q Consensus 545 ----~~l~l~~~~~~llv~~~d~~i~l~~~~~~~~ 575 (1124)
..+..++.++.+++.+.|+.+.+|++...++
T Consensus 305 ~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 305 HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 3345566666788888999999999875443
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.4e-20 Score=234.60 Aligned_cols=242 Identities=12% Similarity=0.097 Sum_probs=185.2
Q ss_pred cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCC-CceeEEEeeccCCCCCCCCCCeEEEEECCC--CCEEEEEECCC
Q 001202 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSR 329 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~-~~~~~~l~~~~~g~~~~h~g~V~~lawSPD--G~~Lasgs~Dg 329 (1124)
.+|.+.| +++|+|++++||+|+.||+|+||++... .....++. + |.++|.+++|+|+ |+.|++|+.||
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~----~----h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT----G----HEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC----C----CSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc----C----CcCceEEEEecCCCCCCEEEEEeCCC
Confidence 6899999 9999999999999999999999999741 34445555 5 9999999999998 99999999999
Q ss_pred cEEEEEcCCCe--eeEEeccCCcCceeeeEEcCC--CCCCcceEEEee---eEEEEeCCCC--eEEEEecCCcceEEEE-
Q 001202 330 GLTVWSVSGCR--LMSTIRQISLSSISSPIVKPN--QDCKYEPLMSGT---SMMQWDEYGY--RLYAIEEGSSERVLIF- 399 (1124)
Q Consensus 330 ~I~vWdv~~~~--l~~tl~~h~~~~V~s~~~sp~--~~~~~~~l~sg~---~i~~W~~~~~--~l~~~~~~~~~~v~~~- 399 (1124)
.|++||+.++. ....+.+| ...|++++|+|+ + ..+++|+ ++++|+..++ .......+|...|..+
T Consensus 78 ~I~vwd~~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~----~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~ 152 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYG----PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (753)
T ss_dssp CEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGC----SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEE
T ss_pred eEEEEECCCCcccccccccCC-CCCeEEEEECCCCCC----CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEE
Confidence 99999999886 67777777 788999999998 6 7788876 8999999876 2233445677777444
Q ss_pred -ec--------------cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccC-
Q 001202 400 -SF--------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD- 463 (1124)
Q Consensus 400 -s~--------------~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~Spd- 463 (1124)
++ ++.+++++.|+++++|++..+.... .+...+.+|..+|.+++|+|+
T Consensus 153 ~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~----------------~~~~~~~~h~~~V~~l~~sp~~ 216 (753)
T 3jro_A 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY----------------VLESTLEGHSDWVRDVAWSPTV 216 (753)
T ss_dssp ECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE----------------EEEEEECCCSSCEEEEEECCCC
T ss_pred ecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc----------------eeeeeecCCCCcEEEEEeccCC
Confidence 44 4678999999999999987765421 123456789999999999999
Q ss_pred --CCEEEEEcCCCeE-EEEcCCCcE--EEecCcCceeeeEEEEEEecC--CEEEEEEEecCCCeEEEEEeeCC
Q 001202 464 --GMFLAVAGLHGLI-LYDIRQKKW--RVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 464 --G~~lAvag~dG~v-lwd~~sg~w--k~f~~~~~e~~~~v~gl~W~~--~~liv~~~~~~~~~~elrly~~~ 529 (1124)
|+++++|+.||.+ +||+.++.- .............+.+++|.+ .++++++. +..|++|+..
T Consensus 217 ~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~-----Dg~I~vwd~~ 284 (753)
T 3jro_A 217 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-----DNKVTLWKEN 284 (753)
T ss_dssp SSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS-----SSCEECCBCC
T ss_pred CCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC-----CCEEEEEecC
Confidence 9999999999999 999988631 111111111122366778864 46666532 3369999874
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=7.1e-20 Score=209.70 Aligned_cols=189 Identities=12% Similarity=-0.056 Sum_probs=148.1
Q ss_pred cCCCCeE-EEEEcc--CCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCc
Q 001202 254 LGSGDAV-CASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (1124)
Q Consensus 254 ~gh~~~v-~va~sp--dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~ 330 (1124)
.+|.+.+ +++|+| +++++++|+.||+|++||+.+ ++...... + .|...|.+++|+|||.+||+|+.||.
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~----~---~~~~~i~~~~~~pdg~~lasg~~dg~ 193 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED-DSQYIVHS----A---KSDVEYSSGVLHKDSLLLALYSPDGI 193 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS-SCEEEEEC----C---CSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC-CcEEEEEe----c---CCCCceEEEEECCCCCEEEEEcCCCE
Confidence 4677888 999999 999999999999999999987 66544432 1 25668999999999999999999999
Q ss_pred EEEEEcCCCeee-EEecc-CCcCceeeeEEcCCCCCCcceEEEee--eEEEEeCCCCeEEEEecC---Ccc----eEEEE
Q 001202 331 LTVWSVSGCRLM-STIRQ-ISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEG---SSE----RVLIF 399 (1124)
Q Consensus 331 I~vWdv~~~~l~-~tl~~-h~~~~V~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l~~~~~~---~~~----~v~~~ 399 (1124)
|++||+.++... .++.+ | ...|++++|+|++ ..+++|+ ++++|+....+....... |.. ..+++
T Consensus 194 i~iwd~~~~~~~~~~~~~~h-~~~v~~l~fs~~g----~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (343)
T 3lrv_A 194 LDVYNLSSPDQASSRFPVDE-EAKIKEVKFADNG----YWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI 268 (343)
T ss_dssp EEEEESSCTTSCCEECCCCT-TSCEEEEEECTTS----SEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEE
T ss_pred EEEEECCCCCCCccEEeccC-CCCEEEEEEeCCC----CEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEE
Confidence 999999998877 78888 6 7899999999998 7888876 899999988765433222 212 23677
Q ss_pred ec-cceEEeecc-CCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEcc---CCCEEEEEcCCC
Q 001202 400 SF-GKCCLNRGV-SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK---DGMFLAVAGLHG 474 (1124)
Q Consensus 400 s~-~k~~~s~s~-d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~Sp---dG~~lAvag~dG 474 (1124)
++ ++.+++++. |+.+++|++..+.. .|.. .++..++|+| +++.+++++.||
T Consensus 269 ~~~g~~l~~~s~~d~~i~v~~~~~~~~-------------~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 269 DDSGKNMIAYSNESNSLTIYKFDKKTK-------------NWTK-----------DEESALCLQSDTADFTDMDVVCGDG 324 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTC-------------SEEE-----------EEEEECCC----CCCCEEEEEEETT
T ss_pred CCCCCEEEEecCCCCcEEEEEEccccc-------------ceEe-----------cCceeEecCccccccceeEEEecCC
Confidence 77 888888887 99999999755433 1111 4677888998 999999999999
Q ss_pred eE-EEE
Q 001202 475 LI-LYD 479 (1124)
Q Consensus 475 ~v-lwd 479 (1124)
.+ ++-
T Consensus 325 ~~~~~~ 330 (343)
T 3lrv_A 325 GIAAIL 330 (343)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 88 554
No 121
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.84 E-value=8.3e-18 Score=221.52 Aligned_cols=461 Identities=12% Similarity=0.044 Sum_probs=274.0
Q ss_pred eEEEEeeCCeEEEEEcC-------CcEEEEecCCCceeEEEEeeChHHHhhhcce-------eEEEEecCCcEEEEEeCC
Q 001202 23 QIIYFKVNNGLLLIASP-------CHIELWSSSQHKVRLGKYKRDSESVQREGEN-------LQAVWSPDTKLIAVVTSS 88 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~~-------~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~-------~~v~wSPDg~~Lav~t~d 88 (1124)
.-++|||||++||.++. ..|.+|+.. .+. ...+.. +.+.+ ..++|||||+.+++++.+
T Consensus 56 ~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~-~g~-~~~lt~------~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~ 127 (1045)
T 1k32_A 56 NNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE-NGE-IKRITY------FSGKSTGRRMFTDVAGFDPDGNLIISTDAM 127 (1045)
T ss_dssp EEEEECTTSSEEEEEEEESTTCCEEEEEEEETT-TTE-EEECCC------CCEEEETTEECSEEEEECTTCCEEEEECTT
T ss_pred cCeEECCCCCEEEEEEeeccCCCCCeEEEEECC-CCC-eEEccc------CCCcccccccccccccCCCCCEEEEEECCc
Confidence 44789999999998642 269999985 433 222111 12233 689999999966666644
Q ss_pred ----C--eEEEEEeeecCceeecCCCCCC-----C-------------------cceeeEEEEee--eeeecccccceEE
Q 001202 89 ----L--YLHIFKVQITEKSIQIGGKQPS-----G-------------------LFFIKISLVLN--EQLPFAEKGLSVS 136 (1124)
Q Consensus 89 ----g--~l~i~~v~~~~~~~~~~~~~~~-----~-------------------~~~~~~~~~~~--~~~~~~~~~~~v~ 136 (1124)
+ .|..|++..+............ + .....+-+... ....+.++...+.
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~ 207 (1045)
T 1k32_A 128 QPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVS 207 (1045)
T ss_dssp SSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCE
T ss_pred CCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCccc
Confidence 3 4555565443311111110000 0 00000000000 0111233445566
Q ss_pred EEeecCCeEEE-EecCCcEEEEeccCccccceeeccCCCCccccccccccCCCC-cccccCCCCeeecccCCCCceEEEE
Q 001202 137 NIVSDNKHMLL-GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG-LASVDTSGAFVSDHKFPISSAIIWL 214 (1124)
Q Consensus 137 ~i~~d~~~llv-~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~q-l~s~~~~~~~~~~~~~~~~~~I~~i 214 (1124)
++...++.++. +..+|.+.+|.++........+.... .+....|+++++ +++.. ++.+... ......+..+
T Consensus 208 ~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~----~~~~~~~SpDG~~la~~~-~~~i~~~--d~~~~~l~~l 280 (1045)
T 1k32_A 208 SPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT----DYYPRHLNTDGRRILFSK-GGSIYIF--NPDTEKIEKI 280 (1045)
T ss_dssp EEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC----SSCEEEEEESSSCEEEEE-TTEEEEE--CTTTCCEEEC
T ss_pred ceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC----CcceeeEcCCCCEEEEEe-CCEEEEe--cCCceEeeee
Confidence 66655666554 44678888877664332222221111 123335666665 33322 2211111 1122233322
Q ss_pred Eec-----------CCcceEEEEe-cCCcEEEEEecCCceEeeeccccce--ecCCCC-eE-EEEEccCCCEEEEEecCC
Q 001202 215 ELC-----------LPMRLLFVLY-SNGQLMSCSVSKKGLKLAEFIKIDK--ELGSGD-AV-CASIAPEQQILAVGTRRG 278 (1124)
Q Consensus 215 ~~s-----------~~~~~~~~~s-~dG~~~~~~~~d~~i~~wd~~~~~~--~~gh~~-~v-~va~spdg~lLAsGs~Dg 278 (1124)
... ......++++ |||+.++++. ++.+.+|+...++. ..+|.. .+ +++|+ ||+.|++++.++
T Consensus 281 ~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~ 358 (1045)
T 1k32_A 281 EIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREG 358 (1045)
T ss_dssp CCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTE
T ss_pred ccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCC
Confidence 110 1124578889 9999888776 67888888765543 256666 67 99999 999999999888
Q ss_pred eEE-EEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeE
Q 001202 279 VVE-LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 357 (1124)
Q Consensus 279 tV~-vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~ 357 (1124)
.+. +|++.. +. ...+. + |...+.+++|||||+.||+++.++.|++||+.++++...+.+| ...+.+++
T Consensus 359 ~l~~~~d~~~-~~-~~~l~----~----~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~-~~~v~~~~ 427 (1045)
T 1k32_A 359 DFLGIYDYRT-GK-AEKFE----E----NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR-EAMITDFT 427 (1045)
T ss_dssp EEEEEEETTT-CC-EEECC----C----CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCCEE
T ss_pred ceEEEEECCC-CC-ceEec----C----CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC-CCCccceE
Confidence 888 889875 43 22222 3 7788999999999999999999999999999999887777666 67789999
Q ss_pred EcCCCCCCcceEEEee-------------eEEEEeCCCCeEEEEecCCcceE--EEEec-cceEEeeccCCceeeeEeee
Q 001202 358 VKPNQDCKYEPLMSGT-------------SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIY 421 (1124)
Q Consensus 358 ~sp~~~~~~~~l~sg~-------------~i~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~ 421 (1124)
|+|++ +.++.+. .+.+|+..+++ .....+|...+ ..|++ ++.++.++.++....|+...
T Consensus 428 ~SpDG----~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 428 ISDNS----RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp ECTTS----CEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred ECCCC----CeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 99998 6665432 68899999988 44445555555 45666 88888888877777776432
Q ss_pred cC------CeEEEee--cCCCcc--------------ceeeec-ccceeeccCCCceEEEEEccCCCEEEE---------
Q 001202 422 GE------DRLLVVQ--SEDTDE--------------LKILHL-NLPVSYISQNWPVQHVAASKDGMFLAV--------- 469 (1124)
Q Consensus 422 ~~------~~l~l~~--~~~~~~--------------~~w~~~-~~p~~~~~~~~~I~~va~SpdG~~lAv--------- 469 (1124)
.+ .+++... ...... ..+... .....+..|...+..++++|||+++++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~ 582 (1045)
T 1k32_A 503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 582 (1045)
T ss_dssp SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence 21 1222211 111110 111111 112233456678999999999998886
Q ss_pred ----EcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEec--CCEEEEEEEecCCCeEEEEEeeCC
Q 001202 470 ----AGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 470 ----ag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~--~~~liv~~~~~~~~~~elrly~~~ 529 (1124)
.+..+.+ +||+.+++.+.+. -.+..+.+. +..+++++. + .+++|+..
T Consensus 583 ~~~~~~~~~~l~~~d~~~~~~~~l~-------~~v~~~~~S~DG~~l~~~~~---~---~i~~~d~~ 636 (1045)
T 1k32_A 583 YYQGAPEKGVLLKYDVKTRKVTEVK-------NNLTDLRLSADRKTVMVRKD---D---GKIYTFPL 636 (1045)
T ss_dssp HHHCCCCCEEEEEEETTTCCEEEEE-------EEEEEEEECTTSCEEEEEET---T---SCEEEEES
T ss_pred cccccCCCceEEEEECCCCcEEEee-------cCcceEEECCCCCEEEEEcC---C---cEEEEeCc
Confidence 1234566 8999998876543 124456665 456666522 2 57888774
No 122
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.84 E-value=1.5e-18 Score=205.48 Aligned_cols=305 Identities=14% Similarity=0.111 Sum_probs=202.7
Q ss_pred ceeEEEEecCC----------cEEEEEeC----CCeEEEEEeeecCceeec--CCCCCCCcceeeE-EEEeeee-eeccc
Q 001202 69 ENLQAVWSPDT----------KLIAVVTS----SLYLHIFKVQITEKSIQI--GGKQPSGLFFIKI-SLVLNEQ-LPFAE 130 (1124)
Q Consensus 69 ~~~~v~wSPDg----------~~Lav~t~----dg~l~i~~v~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~-~~~~~ 130 (1124)
+..++.|.||. .++++||. .++|.++++......... ............. .-..... .....
T Consensus 47 p~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 126 (430)
T 2xyi_A 47 PSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKIN 126 (430)
T ss_dssp CCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEEE
T ss_pred CceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEEc
Confidence 44689999986 46888885 467899987632110000 0000000000000 0000000 11122
Q ss_pred ccceEEEEeecC---CeEEEEecCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCC
Q 001202 131 KGLSVSNIVSDN---KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (1124)
Q Consensus 131 ~~~~v~~i~~d~---~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~ 207 (1124)
+.+.|++++... ..+++++.+|.|++|+.+....... ...+. .....+..|
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~------------------~~~~~--------~~~~~~~~h 180 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE------------------PSGEC--------QPDLRLRGH 180 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC------------------TTCCC--------CCSEEEECC
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC------------------ccccC--------CCcEEecCC
Confidence 344565555443 4677788899999876553211100 00000 000112345
Q ss_pred CceEEEEEecCCcceEEEEecCCc-EEEEEecCCceEeeecccc----------ceecCCCCeE-EEEEcc-CCCEEEEE
Q 001202 208 SSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKI----------DKELGSGDAV-CASIAP-EQQILAVG 274 (1124)
Q Consensus 208 ~~~I~~i~~s~~~~~~~~~s~dG~-~~~~~~~d~~i~~wd~~~~----------~~~~gh~~~v-~va~sp-dg~lLAsG 274 (1124)
...|.++.|+ ++|+ ++++++.|+++++|+.... ....+|...+ +++|+| ++.++|+|
T Consensus 181 ~~~v~~l~~~----------~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~ 250 (430)
T 2xyi_A 181 QKEGYGLSWN----------PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV 250 (430)
T ss_dssp SSCCCCEEEC----------TTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred CCCeEEEEeC----------CCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence 5556555554 7777 8888899999999998762 1235899999 999999 68899999
Q ss_pred ecCCeEEEEEcCCCC--ceeEEEeeccCCCCCCCCCCeEEEEECCCCC-EEEEEECCCcEEEEEcCC-CeeeEEeccCCc
Q 001202 275 TRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSG-CRLMSTIRQISL 350 (1124)
Q Consensus 275 s~DgtV~vwd~~~~~--~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~-~Lasgs~Dg~I~vWdv~~-~~l~~tl~~h~~ 350 (1124)
+.||+|++||+.+.. .....+. + |.++|++++|+|+|. .+++|+.||+|++||+.. +..+.++.+| .
T Consensus 251 ~~dg~i~i~d~~~~~~~~~~~~~~----~----~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h-~ 321 (430)
T 2xyi_A 251 ADDQKLMIWDTRNNNTSKPSHTVD----A----HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH-K 321 (430)
T ss_dssp ETTSEEEEEETTCSCSSSCSEEEE----C----CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC-S
T ss_pred eCCCeEEEEECCCCCCCcceeEee----c----CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC-C
Confidence 999999999998732 4555555 4 899999999999997 799999999999999987 5678888887 7
Q ss_pred CceeeeEEcCCCCCCcceEEEee---eEEEEeCCC--------------CeEEEEecCCcceEEEEec---cc-eEEeec
Q 001202 351 SSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG--------------YRLYAIEEGSSERVLIFSF---GK-CCLNRG 409 (1124)
Q Consensus 351 ~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~--------------~~l~~~~~~~~~~v~~~s~---~k-~~~s~s 409 (1124)
..|++++|+|++. ..+++|+ ++.+|+... .+++....+|...|..+.+ ++ .+++++
T Consensus 322 ~~v~~i~~sp~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 398 (430)
T 2xyi_A 322 DEIFQVQWSPHNE---TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 398 (430)
T ss_dssp SCEEEEEECSSCT---TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred CCEEEEEECCCCC---CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence 8899999999871 3466665 899999876 3677788888888855555 55 789999
Q ss_pred cCCceeeeEeee
Q 001202 410 VSGMTYARQVIY 421 (1124)
Q Consensus 410 ~d~~v~~w~l~~ 421 (1124)
.|+.+++|++..
T Consensus 399 ~dg~i~iw~~~~ 410 (430)
T 2xyi_A 399 EDNIMQVWQMAE 410 (430)
T ss_dssp TTSEEEEEEECH
T ss_pred CCCCEEEeEccc
Confidence 999999999754
No 123
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.84 E-value=3.3e-18 Score=225.29 Aligned_cols=220 Identities=12% Similarity=-0.004 Sum_probs=166.3
Q ss_pred eEEEEecCCcEEEEEecCCceEeeecccccee--cC-----------CCCeE-EEEEc-cCCCEEEEEecCCeEEEEEcC
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LG-----------SGDAV-CASIA-PEQQILAVGTRRGVVELYDLA 286 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~--~g-----------h~~~v-~va~s-pdg~lLAsGs~DgtV~vwd~~ 286 (1124)
...+++|||+.++++ .++.+.+|+....+.. .+ |...+ +++|| |||+.||+++ ++.|.+|++.
T Consensus 248 ~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~ 325 (1045)
T 1k32_A 248 YPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS 325 (1045)
T ss_dssp CEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT
T ss_pred ceeeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC
Confidence 356888999988876 4788999987322211 12 23357 99999 9999999987 8899999987
Q ss_pred CCCceeEEEeeccCCCCCCCCC-CeEEEEECCCCCEEEEEECCCcEE-EEEcCCCeeeEEeccCCcCceeeeEEcCCCCC
Q 001202 287 ESASLIRTVSLYDWGYSMDDTG-PVSCIAWTPDNSAFAVGWKSRGLT-VWSVSGCRLMSTIRQISLSSISSPIVKPNQDC 364 (1124)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~h~g-~V~~lawSPDG~~Lasgs~Dg~I~-vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~ 364 (1124)
. +... .+. + |.+ .+.+++|+ ||+.|++++.++.+. +|++.++... .+.+| ...+..++|+|++
T Consensus 326 ~-~~~~-~~~----~----~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~-~~~~~~~~~SpDG-- 390 (1045)
T 1k32_A 326 G-TYVL-KVP----E----PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN-LGNVFAMGVDRNG-- 390 (1045)
T ss_dssp S-SBEE-ECS----C----CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCC-CCSEEEEEECTTS--
T ss_pred C-CceE-Ecc----C----CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCC-ccceeeeEECCCC--
Confidence 6 4432 232 2 667 89999999 999999999988888 9999887654 44454 5789999999998
Q ss_pred CcceEEEee---eEEEEeCCCCeEEEEecCCcceE--EEEec-cceEEeeccCC----------ceeeeEeeecCCeEEE
Q 001202 365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSG----------MTYARQVIYGEDRLLV 428 (1124)
Q Consensus 365 ~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~----------~v~~w~l~~~~~~l~l 428 (1124)
+.++++. .+.+|+..++++.....+|...+ ++|++ ++.+++++.++ .+++|++..+.
T Consensus 391 --~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~----- 463 (1045)
T 1k32_A 391 --KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----- 463 (1045)
T ss_dssp --SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-----
T ss_pred --CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-----
Confidence 7777665 88999999998887776666665 67777 88787776543 77788764322
Q ss_pred eecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcC
Q 001202 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (1124)
Q Consensus 429 ~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~ 481 (1124)
+..+..|...+.+++|||||++|++++.++.. .|+..
T Consensus 464 ----------------~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 464 ----------------IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp ----------------EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred ----------------EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 23344567778889999999999999988777 77654
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.84 E-value=8.8e-20 Score=213.48 Aligned_cols=256 Identities=13% Similarity=0.094 Sum_probs=150.9
Q ss_pred EEEEecCCcEEEEEecCCceEeeeccccce--------ecCCCCeE-EEEEcc--------CCCEEEEEecCCeEEEEEc
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--------ELGSGDAV-CASIAP--------EQQILAVGTRRGVVELYDL 285 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~--------~~gh~~~v-~va~sp--------dg~lLAsGs~DgtV~vwd~ 285 (1124)
..++.++++++++++.|+++++||...++. ..||.+.| +++|+| |+++||+|+.|++|+|||+
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL 173 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence 345567888999999999999999876542 26899999 999998 8999999999999999999
Q ss_pred CCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCC-EEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCC
Q 001202 286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC 364 (1124)
Q Consensus 286 ~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~-~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~ 364 (1124)
.+ +.....+. + |.++|.+++|+|++. +|++|+.||+|++||+.+++...+..++. .......+++.
T Consensus 174 ~~-~~~~~~~~----~----~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~-~~~~~~~~s~~--- 240 (393)
T 4gq1_A 174 TD-EGPILAGY----P----LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTE-LVKNPWLLTLN--- 240 (393)
T ss_dssp ET-TEEEEEEE----E----CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----------CSCCCSEEEE---
T ss_pred CC-Cceeeeec----C----CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccC-CcccceEEecc---
Confidence 87 54444443 3 889999999999885 89999999999999999887665554431 11111111111
Q ss_pred CcceEEEeeeEEEEeCCCCeEEEEecCCcceE--EEEe-c-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceee
Q 001202 365 KYEPLMSGTSMMQWDEYGYRLYAIEEGSSERV--LIFS-F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (1124)
Q Consensus 365 ~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v--~~~s-~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~ 440 (1124)
...........+|...+ +.+. + ++.+++++.|+++++|++..+.....+..... ..+.
T Consensus 241 ---------------~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~---~~~~ 302 (393)
T 4gq1_A 241 ---------------TLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTM---KLGP 302 (393)
T ss_dssp ---------------SGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------
T ss_pred ---------------cccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecC---cccc
Confidence 11101111122444444 3333 3 77889999999999999876554221111100 0000
Q ss_pred ecccc--eeeccCCCceEEEEEcc-CCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecCC--EEEEE
Q 001202 441 HLNLP--VSYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK--IIVVC 512 (1124)
Q Consensus 441 ~~~~p--~~~~~~~~~I~~va~Sp-dG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~--~liv~ 512 (1124)
....| .....+...+..+.+.+ ++.++++|+.||.+ +||+.+++..... ....-.|..++|.++ +|+++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~---~~~~~~V~svafspdG~~LA~a 377 (393)
T 4gq1_A 303 KNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP---IQLGMPIVDFCWHQDGSHLAIA 377 (393)
T ss_dssp -CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE---EECSSCEEEEEECTTSSEEEEE
T ss_pred EEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe---cCCCCcEEEEEEcCCCCEEEEE
Confidence 00011 11222333333333333 45577788899999 9999987632211 111124788999754 55554
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.82 E-value=7.2e-18 Score=198.53 Aligned_cols=229 Identities=11% Similarity=0.094 Sum_probs=172.2
Q ss_pred CCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEE-EEecCCeE
Q 001202 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILA-VGTRRGVV 280 (1124)
Q Consensus 206 ~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLA-sGs~DgtV 280 (1124)
.+...|.++.++ ++|++++++..++.+++||..+++.. .+|...+ +++|+|+++.++ +++.||+|
T Consensus 167 ~~~~~v~~~~~~----------~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i 236 (433)
T 3bws_A 167 KKLGFVETISIP----------EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDI 236 (433)
T ss_dssp TTCCEEEEEEEG----------GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred ccCCceeEEEEc----------CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcE
Confidence 455667665554 78999999999999999998776543 4677778 999999999875 55589999
Q ss_pred EEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE--------CCCcEEEEEcCCCeeeEEeccCCcCc
Q 001202 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW--------KSRGLTVWSVSGCRLMSTIRQISLSS 352 (1124)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs--------~Dg~I~vWdv~~~~l~~tl~~h~~~~ 352 (1124)
++||+.+ ++....+. +.+.+.+++|+|||+.+++++ .||.|++||+.+++....+.. ...
T Consensus 237 ~~~d~~~-~~~~~~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~--~~~ 304 (433)
T 3bws_A 237 SVIDRKT-KLEIRKTD---------KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP--PGN 304 (433)
T ss_dssp EEEETTT-TEEEEECC---------CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE--EEC
T ss_pred EEEECCC-CcEEEEec---------CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC--CCC
Confidence 9999987 66665554 345699999999999999988 588999999999888777643 346
Q ss_pred eeeeEEcCCCCCCcce-EEEee---eEEEEeCCCCeEEEEecCCcceE--EEEec-cceEEeecc---------------
Q 001202 353 ISSPIVKPNQDCKYEP-LMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGV--------------- 410 (1124)
Q Consensus 353 V~s~~~sp~~~~~~~~-l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~--------------- 410 (1124)
+.+++|+|++ +. ++++. .+.+|+..++++..... +...+ +++++ ++.+++++.
T Consensus 305 ~~~~~~~~~g----~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~ 379 (433)
T 3bws_A 305 KRHIVSGNTE----NKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLV 379 (433)
T ss_dssp EEEEEECSST----TEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSS
T ss_pred cceEEECCCC----CEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCcccccccccccc
Confidence 8899999987 53 34433 89999999988876654 33445 45555 666666554
Q ss_pred CCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcC-CCeE-EEEcCC
Q 001202 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIRQ 482 (1124)
Q Consensus 411 d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~-dG~v-lwd~~s 482 (1124)
||.+++|+...+.. ...+.. ...+.+++|+|||+++++++. ||.+ +|++..
T Consensus 380 dg~v~~~d~~~~~~--------------------~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 380 LGKVYVIDTTTDTV--------------------KEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CCEEEEEETTTTEE--------------------EEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ceEEEEEECCCCcE--------------------EEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 46888888654332 112222 346899999999999998875 9999 999853
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.81 E-value=1.1e-17 Score=196.81 Aligned_cols=271 Identities=12% Similarity=0.057 Sum_probs=187.5
Q ss_pred EEEEeeCCeEEEEEcC-CcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCce
Q 001202 24 IIYFKVNNGLLLIASP-CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (1124)
Q Consensus 24 iv~fS~dg~llA~~~~-~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~ 102 (1124)
.++|+|++.++++++. ++|++|+.. .+..+. .........+.+.+.+++|+|||+.+++++.+|.|++|++..+...
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~-~g~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDIN-SGQTVR-LSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK 204 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETT-TCCEEE-ECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECC-CCeEee-ecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence 4778998888888765 479999996 444332 2222122234567889999999999999999999999998653211
Q ss_pred eecCCCCCCCcceeeEEEEeeeeeecccccceEE--EEeecCCeEEEEe-cCCcEEEEeccCccccceeeccCCCCcccc
Q 001202 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (1124)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~~d~~~llv~t-~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i 179 (1124)
... ..+...+. ++.++++.++++. .+|.+++| +........
T Consensus 205 ~~~-----------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~--d~~~~~~~~----------- 248 (433)
T 3bws_A 205 ATV-----------------------DLTGKWSKILLYDPIRDLVYCSNWISEDISVI--DRKTKLEIR----------- 248 (433)
T ss_dssp EEE-----------------------ECSSSSEEEEEEETTTTEEEEEETTTTEEEEE--ETTTTEEEE-----------
T ss_pred EEE-----------------------cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEE--ECCCCcEEE-----------
Confidence 100 01112233 4555677776655 68888774 433221110
Q ss_pred ccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEe--------cCCceEeeeccccc
Q 001202 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV--------SKKGLKLAEFIKID 251 (1124)
Q Consensus 180 ~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~--------~d~~i~~wd~~~~~ 251 (1124)
.......+..+ +++|||+.++++. .++.+++||..+++
T Consensus 249 ------------------------~~~~~~~~~~~----------~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~ 294 (433)
T 3bws_A 249 ------------------------KTDKIGLPRGL----------LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK 294 (433)
T ss_dssp ------------------------ECCCCSEEEEE----------EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE
T ss_pred ------------------------EecCCCCceEE----------EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc
Confidence 01112234444 4457787777666 47789999987665
Q ss_pred ee--cCCCCeE-EEEEccCCC-EEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC
Q 001202 252 KE--LGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1124)
Q Consensus 252 ~~--~gh~~~v-~va~spdg~-lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~ 327 (1124)
.. .+|...+ +++|+|+++ ++++++.|++|++||+++ ++....+. +.+.+.+++|+|||+.+++++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~-~~~~~~~~---------~~~~~~~~~~s~dg~~l~~~~~ 364 (433)
T 3bws_A 295 LIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE-KKVQKSIP---------VFDKPNTIALSPDGKYLYVSCR 364 (433)
T ss_dssp EEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT-TEEEEEEE---------CSSSEEEEEECTTSSEEEEEEC
T ss_pred EEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC-CcEEEEec---------CCCCCCeEEEcCCCCEEEEEec
Confidence 43 3444556 999999996 557778999999999987 77666665 6677999999999999998887
Q ss_pred ---------------CCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee----eEEEEeCCC
Q 001202 328 ---------------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYG 382 (1124)
Q Consensus 328 ---------------Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~----~i~~W~~~~ 382 (1124)
||.|++||+.+++.+..+..+ ..+.+++|+|++ +.++.+. ++.+|+.++
T Consensus 365 ~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 365 GPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG--NQPTGLDVSPDN----RYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS--SSEEEEEECTTS----CEEEEEETTTTEEEEEEETT
T ss_pred CCCccccccccccccceEEEEEECCCCcEEEEecCC--CCCceEEEcCCC----CEEEEEECCCCeEEEEEecC
Confidence 579999999999988888764 468899999987 6655332 677777654
No 127
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.81 E-value=1.4e-17 Score=193.16 Aligned_cols=224 Identities=10% Similarity=0.078 Sum_probs=170.3
Q ss_pred EEEEecCCcEE-EEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEE-EecCCeEEEEEcCCCCceeEEEe
Q 001202 223 LFVLYSNGQLM-SCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAV-GTRRGVVELYDLAESASLIRTVS 296 (1124)
Q Consensus 223 ~~~~s~dG~~~-~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAs-Gs~DgtV~vwd~~~~~~~~~~l~ 296 (1124)
.+++++||+.+ +++..++++++||..+++.. ..+. .+ +++|+|+++.|++ ++.|++|++||+.+ ++....+.
T Consensus 36 ~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~-~~~~~~~~ 113 (391)
T 1l0q_A 36 GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS-NTVAGTVK 113 (391)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE
T ss_pred eEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCC-CeEEEEEe
Confidence 34555888866 56668899999998877653 3333 66 9999999998754 55679999999987 77666665
Q ss_pred eccCCCCCCCCCCeEEEEECCCCCEE-EEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceE-EEee-
Q 001202 297 LYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT- 373 (1124)
Q Consensus 297 ~~~~g~~~~h~g~V~~lawSPDG~~L-asgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l-~sg~- 373 (1124)
+...+.+++|+|||+.+ ++++.|+.|++||+.+++....+..+ ..+.+++|+|++ +.+ +++.
T Consensus 114 ---------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg----~~l~~~~~~ 178 (391)
T 1l0q_A 114 ---------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG--RSPKGIAVTPDG----TKVYVANFD 178 (391)
T ss_dssp ---------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC--SSEEEEEECTTS----SEEEEEETT
T ss_pred ---------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC--CCcceEEECCCC----CEEEEEeCC
Confidence 44568999999999977 68888999999999999988888765 457899999998 555 4543
Q ss_pred --eEEEEeCCCCeEEEEecCCcceE--EEEec-cceEEeec---cCCceeeeEeeecCCeEEEeecCCCccceeeecccc
Q 001202 374 --SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRG---VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (1124)
Q Consensus 374 --~i~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s---~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p 445 (1124)
.+.+|+..+++....... ...+ +++++ ++.+++++ .++.+++|++..+.. .
T Consensus 179 ~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~--------------------~ 237 (391)
T 1l0q_A 179 SMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI--------------------T 237 (391)
T ss_dssp TTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE--------------------E
T ss_pred CCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE--------------------E
Confidence 799999999988776654 3344 45555 67777766 688999999754432 1
Q ss_pred eeeccCCCceEEEEEccCCCEE-EEEcCCCeE-EEEcCCCcE
Q 001202 446 VSYISQNWPVQHVAASKDGMFL-AVAGLHGLI-LYDIRQKKW 485 (1124)
Q Consensus 446 ~~~~~~~~~I~~va~SpdG~~l-Avag~dG~v-lwd~~sg~w 485 (1124)
..+..+. .+.+++|+|||+++ ++++.||.+ +||+.+++.
T Consensus 238 ~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 238 ARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence 2222333 46889999999988 566889999 999998764
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.81 E-value=8.1e-18 Score=188.80 Aligned_cols=148 Identities=6% Similarity=0.001 Sum_probs=111.0
Q ss_pred EEEEec---CCcEEEEEecCCceEeeecccccee---cCCC---CeE-EEEEccCCCEE------------EEEecCCeE
Q 001202 223 LFVLYS---NGQLMSCSVSKKGLKLAEFIKIDKE---LGSG---DAV-CASIAPEQQIL------------AVGTRRGVV 280 (1124)
Q Consensus 223 ~~~~s~---dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~---~~v-~va~spdg~lL------------AsGs~DgtV 280 (1124)
.+++++ ||.++++++.|+++++||..+++.. .+|. ..+ +++|||+|.++ |+|+.|++|
T Consensus 183 ~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI 262 (356)
T 2w18_A 183 ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL 262 (356)
T ss_dssp EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEE
T ss_pred eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE
Confidence 445556 7899999999999999999988754 3433 345 78999999986 678899999
Q ss_pred EEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcC
Q 001202 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (1124)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp 360 (1124)
++||..+ +..+.++... ++.+|.+.+.+.+++ |..+|+|+.|++|+|||+.+++++.++.+|....+.+++|+|
T Consensus 263 klWd~~t-gk~l~v~~~~---~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP 336 (356)
T 2w18_A 263 IVINPKT-TLSVGVMLYC---LPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG 336 (356)
T ss_dssp EEEETTT-TEEEEEEEEC---CCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS
T ss_pred EEEECCC-CEEEEEEEee---ccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC
Confidence 9999987 7766654321 112377776655554 889999999999999999999999999988444455689999
Q ss_pred CCCCCcceEEEee---eEEEEeC
Q 001202 361 NQDCKYEPLMSGT---SMMQWDE 380 (1124)
Q Consensus 361 ~~~~~~~~l~sg~---~i~~W~~ 380 (1124)
++ +.+++|+ ++++|+.
T Consensus 337 DG----~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 337 TD----SHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SS----SEEEEECTTSCEEEEEE
T ss_pred CC----CEEEEEECCCcEEEecC
Confidence 98 7777776 7777763
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.80 E-value=2.2e-17 Score=201.36 Aligned_cols=347 Identities=9% Similarity=0.051 Sum_probs=208.7
Q ss_pred eEEEEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEe--eec
Q 001202 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV--QIT 99 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v--~~~ 99 (1124)
+...|+|+|.++++.+ +++|.+||.. .+..+..+.- .+. ...++|||||++|++++.++.|.+||+ .+.
T Consensus 141 ~~~~~~p~~~~~vs~~~d~~V~v~D~~-t~~~~~~i~~------g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~ 212 (543)
T 1nir_A 141 QLNDLDLPNLFSVTLRDAGQIALVDGD-SKKIVKVIDT------GYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP 212 (543)
T ss_dssp CCSCCCGGGEEEEEEGGGTEEEEEETT-TCCEEEEEEC------STT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC
T ss_pred cccccCCCCEEEEEEcCCCeEEEEECC-CceEEEEEec------Ccc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC
Confidence 3334899999888876 4689999996 5555544421 112 457899999999999999999999999 432
Q ss_pred CceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEee----cCCeEEEEe-cCCcEEEEeccCcccccee-eccCC
Q 001202 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS----DNKHMLLGL-SDGSLYSISWKGEFYGAFE-LVHSS 173 (1124)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~----d~~~llv~t-~dg~v~~~~Wd~~~~~~~~-l~~~~ 173 (1124)
.. +.. +.. +....-.++++ |++.++++. .++.|.++ |..+..... +.
T Consensus 213 ~~-------------~~~--------i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~--D~~t~~~~~~i~--- 265 (543)
T 1nir_A 213 TK-------------VAE--------IKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM--DGETLEPKQIVS--- 265 (543)
T ss_dssp EE-------------EEE--------EEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEE--ETTTCCEEEEEE---
T ss_pred cE-------------EEE--------Eec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEE--eccccccceeec---
Confidence 11 000 111 11112235667 788888887 47888774 544332211 00
Q ss_pred CCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcE-EEEEecCCceEeeeccccce
Q 001202 174 NDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQL-MSCSVSKKGLKLAEFIKIDK 252 (1124)
Q Consensus 174 ~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~-~~~~~~d~~i~~wd~~~~~~ 252 (1124)
.. +...+.+ -......+.. ++++++|+. +++...++.+.+||..+.+.
T Consensus 266 -----~~--g~~~~~~--------------~~~~~~~v~~----------i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~ 314 (543)
T 1nir_A 266 -----TR--GMTVDTQ--------------TYHPEPRVAA----------IIASHEHPEFIVNVKETGKVLLVNYKDIDN 314 (543)
T ss_dssp -----CC--EECSSSC--------------CEESCCCEEE----------EEECSSSSEEEEEETTTTEEEEEECTTSSS
T ss_pred -----cc--CcccCcc--------------ccccCCceEE----------EEECCCCCEEEEEECCCCeEEEEEecCCCc
Confidence 00 0000000 0001123433 444565544 34444677788888765332
Q ss_pred e----cCCCCeE-EEEEccCCCEEEEE-ecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCC-CCEEEEE
Q 001202 253 E----LGSGDAV-CASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVG 325 (1124)
Q Consensus 253 ~----~gh~~~v-~va~spdg~lLAsG-s~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPD-G~~Lasg 325 (1124)
. ..+.... .++|+|+|+++.++ ..+++|.+||..+ ++++.++..... .|.+....+ ++|+ |..++++
T Consensus 315 l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g~~----ph~g~g~~~-~~p~~g~~~~s~ 388 (543)
T 1nir_A 315 LTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKT----PHPGRGANF-VHPKYGPVWSTS 388 (543)
T ss_dssp CEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSS----BCCTTCEEE-EETTTEEEEEEE
T ss_pred ceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC-CeEEEeeccCCC----CCCCCCccc-CCCCCccEEEec
Confidence 1 2344455 89999999976554 5689999999998 888877763222 276655444 4787 6677777
Q ss_pred E-CCCcEEEEEcCC-------CeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEE
Q 001202 326 W-KSRGLTVWSVSG-------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVL 397 (1124)
Q Consensus 326 s-~Dg~I~vWdv~~-------~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~ 397 (1124)
. .|++|+||++.+ .+++.++.+| ...+..++++|++ +.+.++. ..+.+
T Consensus 389 ~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~-g~~~~~v~~~pdg----~~l~v~~----------------~~~~~--- 444 (543)
T 1nir_A 389 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQ-GGGSLFIKTHPKS----SHLYVDT----------------TFNPD--- 444 (543)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECS-CSCCCCEECCTTC----CEEEECC----------------TTCSS---
T ss_pred cCCCceEEEEEeCCCCCchhcCeEEEEEEcC-CCCceEEEcCCCC----CcEEEec----------------CCCCC---
Confidence 5 579999999987 7888999887 3556778888876 4433211 00000
Q ss_pred EEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEE-----cC
Q 001202 398 IFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA-----GL 472 (1124)
Q Consensus 398 ~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAva-----g~ 472 (1124)
...++++.+|++.+++....... .-.| ..+..+...+.+++|+|||+.+.++ +.
T Consensus 445 ----------~~~~~~v~v~d~~~~~~~~~~~~-----v~~~------~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~ 503 (543)
T 1nir_A 445 ----------ARISQSVAVFDLKNLDAKYQVLP-----IAEW------ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKND 503 (543)
T ss_dssp ----------HHHHTCEEEEETTCTTSCCEEEC-----HHHH------HCCCSSCCEEEEEEECSSSSEEEEEEECCTTS
T ss_pred ----------cccCceEEEEECCCCCCCeEEee-----chhh------cccCCCCCceEeccCCCCCCEEEEEeecCCCC
Confidence 00134555666544433100000 0000 0012345678999999999999977 24
Q ss_pred CCeE-EEEcCCCcEE
Q 001202 473 HGLI-LYDIRQKKWR 486 (1124)
Q Consensus 473 dG~v-lwd~~sg~wk 486 (1124)
++.| +||..|++.+
T Consensus 504 ~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 504 SSALVVVDDKTLKLK 518 (543)
T ss_dssp CCEEEEEETTTTEEE
T ss_pred CCeEEEEECCCceEE
Confidence 7888 9999998754
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.75 E-value=1.2e-16 Score=188.24 Aligned_cols=206 Identities=13% Similarity=0.072 Sum_probs=148.6
Q ss_pred EEEEecCCcEEEEEecCC---ceEeeecccccee--cCCCCeE-EEEEccCCCEEE-EEecCCe--EEEEEcCCCCceeE
Q 001202 223 LFVLYSNGQLMSCSVSKK---GLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILA-VGTRRGV--VELYDLAESASLIR 293 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~---~i~~wd~~~~~~~--~gh~~~v-~va~spdg~lLA-sGs~Dgt--V~vwd~~~~~~~~~ 293 (1124)
.++++|||+.+++++.+. ++.+||..+++.. .+|...+ +++|||||+.|| +++.||. |.+||+.+ ++. .
T Consensus 183 ~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-~~~-~ 260 (415)
T 2hqs_A 183 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQI-R 260 (415)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCE-E
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC-CCE-E
Confidence 344558888888877664 8999998876543 5677778 999999999888 6666665 88999876 443 3
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC-C--cEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEE
Q 001202 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM 370 (1124)
Q Consensus 294 ~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D-g--~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~ 370 (1124)
.+. + |.+.+.+++|||||+.|++++.+ + .|.+||+.++.. ..+..+ ...+.+++|+|++ +.++
T Consensus 261 ~l~----~----~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~spdG----~~l~ 326 (415)
T 2hqs_A 261 QVT----D----GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWE-GSQNQDADVSSDG----KFMV 326 (415)
T ss_dssp ECC----C----CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCS-SSEEEEEEECTTS----SEEE
T ss_pred eCc----C----CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecC-CCcccCeEECCCC----CEEE
Confidence 333 3 77889999999999999988864 4 577779988764 344444 4578899999998 6665
Q ss_pred Eee------eEEEEeCCCCeEEEEecCCcceEEEEec-cceEEeeccCC---ceeeeEeeecCCeEEEeecCCCccceee
Q 001202 371 SGT------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSG---MTYARQVIYGEDRLLVVQSEDTDELKIL 440 (1124)
Q Consensus 371 sg~------~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~---~v~~w~l~~~~~~l~l~~~~~~~~~~w~ 440 (1124)
.+. .+.+|+..++++..........-..+++ ++.+++++.++ .+.+|++. +..
T Consensus 327 ~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~---------------- 389 (415)
T 2hqs_A 327 MVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRF---------------- 389 (415)
T ss_dssp EEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCC----------------
T ss_pred EEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCc----------------
Confidence 543 6889999998875443322222256666 78788777666 56666653 222
Q ss_pred ecccceeeccCCCceEEEEEccCCC
Q 001202 441 HLNLPVSYISQNWPVQHVAASKDGM 465 (1124)
Q Consensus 441 ~~~~p~~~~~~~~~I~~va~SpdG~ 465 (1124)
...+.+|++.|++++|||.-.
T Consensus 390 ----~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 390 ----KARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ----EEECCCSSSEEEEEEECCCCC
T ss_pred ----EEEeeCCCCCCcCCccccccc
Confidence 345667889999999999654
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.73 E-value=1.2e-15 Score=193.17 Aligned_cols=336 Identities=13% Similarity=0.080 Sum_probs=200.0
Q ss_pred cceeEEEEecCCcEEEEEeC-CC-----eEEEEEeeecCceeecCCC--CCCCcceeeEEEEeeeeeeccc-ccceEEEE
Q 001202 68 GENLQAVWSPDTKLIAVVTS-SL-----YLHIFKVQITEKSIQIGGK--QPSGLFFIKISLVLNEQLPFAE-KGLSVSNI 138 (1124)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~-dg-----~l~i~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i 138 (1124)
+.+..++|||||++||+++. +| .|++|++.++........+ .+.+..+..-.-.......+.+ ....-.++
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 34678999999999999998 88 8999999776532222111 1000000000000000000000 01122357
Q ss_pred eecCCeEEEEecCCcEEEEeccCccc-cceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEec
Q 001202 139 VSDNKHMLLGLSDGSLYSISWKGEFY-GAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (1124)
Q Consensus 139 ~~d~~~llv~t~dg~v~~~~Wd~~~~-~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s 217 (1124)
++|++.+++++. +.+.+++.++... ... .+..+...+..+.
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~-----------------------------------~l~~~~~~~~~~~-- 158 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVR-----------------------------------QLTHGEGFATDAK-- 158 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCSTTSCC-----------------------------------BCCCSSSCEEEEE--
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCcceEE-----------------------------------EcccCCccccccc--
Confidence 788888888775 7777644332100 111 1122334455444
Q ss_pred CCcceEEEEecCCcEEEEEecCCceEeeecccccee---cCCCC----------------eE-EEEEccCCCEEEEEecC
Q 001202 218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGD----------------AV-CASIAPEQQILAVGTRR 277 (1124)
Q Consensus 218 ~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~----------------~v-~va~spdg~lLAsGs~D 277 (1124)
++|||+.++++.+ .++.+|+..+++.. .++.. .+ +++|||||+.||+++.|
T Consensus 159 --------~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d 229 (741)
T 2ecf_A 159 --------LSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARID 229 (741)
T ss_dssp --------ECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEE
T ss_pred --------CCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEc
Confidence 4578887777664 47888987765432 12222 13 78999999999999887
Q ss_pred C---------------------------------eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEE
Q 001202 278 G---------------------------------VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (1124)
Q Consensus 278 g---------------------------------tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Las 324 (1124)
+ .|.+||+++. .....+.. + ..|.+.+.+++| |||+.|++
T Consensus 230 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~-~~~~~~~~---~--~~~~~~~~~~~~-pDg~~l~~ 302 (741)
T 2ecf_A 230 ESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ-AQTQWIDL---G--KEQDIYLARVNW-RDPQHLSF 302 (741)
T ss_dssp CTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT-CCCEEECC---C--SCSSEEEEEEEE-EETTEEEE
T ss_pred CCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC-CceEEecC---C--CCcceEEEEEEe-CCCCEEEE
Confidence 6 7788887641 22222221 1 137788999999 99999998
Q ss_pred EEC-----CCcEEEEEcCCCeeeEEeccCCcC---ceeeeEEcCCCCCCcceEEEee---eEEEEe--CCCCeEEEEecC
Q 001202 325 GWK-----SRGLTVWSVSGCRLMSTIRQISLS---SISSPIVKPNQDCKYEPLMSGT---SMMQWD--EYGYRLYAIEEG 391 (1124)
Q Consensus 325 gs~-----Dg~I~vWdv~~~~l~~tl~~h~~~---~V~s~~~sp~~~~~~~~l~sg~---~i~~W~--~~~~~l~~~~~~ 391 (1124)
++. ++.|.+||+.++.+...+..+... .+.+++|+|++ +.+.++. ...+|. ..+. ......
T Consensus 303 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg----~~~~~~~~~g~~~l~~~~~~~~--~~~l~~ 376 (741)
T 2ecf_A 303 QRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG----SILWSSERTGFQHLYRIDSKGK--AAALTH 376 (741)
T ss_dssp EEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS----CEEEEECTTSSCEEEEECSSSC--EEESCC
T ss_pred EEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC----eEEEEecCCCccEEEEEcCCCC--eeeeee
Confidence 764 567999999999877777665333 35689999998 6665544 345554 4444 455555
Q ss_pred CcceEE---EEec-cceEE-eeccCC--ceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCC
Q 001202 392 SSERVL---IFSF-GKCCL-NRGVSG--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (1124)
Q Consensus 392 ~~~~v~---~~s~-~k~~~-s~s~d~--~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG 464 (1124)
+...+. .+++ ++.++ +++.++ .+++|.+...... +..+.. ...+.+++|||||
T Consensus 377 ~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~-------------------~~~l~~-~~~~~~~~~spdg 436 (741)
T 2ecf_A 377 GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ-------------------PQRLSK-APGMHSASFARNA 436 (741)
T ss_dssp SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC-------------------CEECCC-SCSEEEEEECTTS
T ss_pred cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC-------------------eeeccc-CCCceEEEECCCC
Confidence 555552 4677 66554 555555 7889987542221 222322 4457899999999
Q ss_pred CEEEEEcCC----CeE-EEEcCCC
Q 001202 465 MFLAVAGLH----GLI-LYDIRQK 483 (1124)
Q Consensus 465 ~~lAvag~d----G~v-lwd~~sg 483 (1124)
+++++...+ +.+ +|+..++
T Consensus 437 ~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 437 SVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp SEEEEEEEETTEEEEEEEEETTSC
T ss_pred CEEEEEecCCCCCCeEEEEEcCCC
Confidence 999876543 334 6665444
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.70 E-value=2.8e-15 Score=176.57 Aligned_cols=224 Identities=15% Similarity=0.108 Sum_probs=161.9
Q ss_pred CceEeeeccccc--eecCCCCeE-EEEEccCCCEEEEEecCC---eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEE
Q 001202 240 KGLKLAEFIKID--KELGSGDAV-CASIAPEQQILAVGTRRG---VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI 313 (1124)
Q Consensus 240 ~~i~~wd~~~~~--~~~gh~~~v-~va~spdg~lLAsGs~Dg---tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~l 313 (1124)
+++++||..... .+.+|.+.+ +++|||||+.||+++.|+ +|++||+.+ ++.. .+. + |.+.+.++
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t-g~~~-~l~----~----~~~~~~~~ 228 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAVR-QVA----S----FPRHNGAP 228 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCEE-EEE----C----CSSCEEEE
T ss_pred ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CcEE-Eee----c----CCCcccCE
Confidence 678888875432 235788888 999999999999999886 999999987 5544 333 3 78889999
Q ss_pred EECCCCCEEE-EEECCCc--EEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee------eEEEEeCCCCe
Q 001202 314 AWTPDNSAFA-VGWKSRG--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYR 384 (1124)
Q Consensus 314 awSPDG~~La-sgs~Dg~--I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~------~i~~W~~~~~~ 384 (1124)
+|||||+.|+ +++.|+. |.+||+.++++ ..+..| ...+.+++|+|++ +.++.++ .+..|+..+++
T Consensus 229 ~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~spdg----~~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 229 AFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG-RSNNTEPTWFPDS----QNLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC-SSCEEEEEECTTS----SEEEEEECTTSSCEEEEEETTSSC
T ss_pred EEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC-CCcccceEECCCC----CEEEEEECCCCCcEEEEEECCCCC
Confidence 9999999888 6666655 99999988775 566666 5679999999998 6665433 56778988877
Q ss_pred EEEEecCCcceE--EEEec-cceEEeeccC---CceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEE
Q 001202 385 LYAIEEGSSERV--LIFSF-GKCCLNRGVS---GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (1124)
Q Consensus 385 l~~~~~~~~~~v--~~~s~-~k~~~s~s~d---~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~v 458 (1124)
.... ..+...+ ..+++ ++.++.++.+ ..+.+|++..+.. ..+..+. .+.++
T Consensus 303 ~~~l-~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---------------------~~l~~~~-~~~~~ 359 (415)
T 2hqs_A 303 PQRI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---------------------QVLSSTF-LDETP 359 (415)
T ss_dssp CEEC-CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---------------------EECCCSS-SCEEE
T ss_pred EEEE-ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE---------------------EEecCCC-CcCCe
Confidence 5432 2334455 56666 7777776654 4677777654332 1222333 78999
Q ss_pred EEccCCCEEEEEcCCC---eE-EEEcCCCcEEEecCcCceeeeEEEEEEecC
Q 001202 459 AASKDGMFLAVAGLHG---LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG 506 (1124)
Q Consensus 459 a~SpdG~~lAvag~dG---~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~ 506 (1124)
+|+|||++|++++.++ .+ +||+.++..+.+... .-.+..++|.+
T Consensus 360 ~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~----~~~v~~~~~~~ 407 (415)
T 2hqs_A 360 SLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT----DGQVKFPAWSP 407 (415)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS----SSEEEEEEECC
T ss_pred EEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCC----CCCCcCCcccc
Confidence 9999999999998877 67 999987766554321 12466777753
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.70 E-value=4.7e-15 Score=180.79 Aligned_cols=286 Identities=10% Similarity=0.029 Sum_probs=195.8
Q ss_pred EEEEecCCcEEEEEecCCceEeeec--ccccee--cCCCCeE-EEEEcc----CCCEEEEEe-cCCeEEEEEcCCCCcee
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEF--IKIDKE--LGSGDAV-CASIAP----EQQILAVGT-RRGVVELYDLAESASLI 292 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~--~~~~~~--~gh~~~v-~va~sp----dg~lLAsGs-~DgtV~vwd~~~~~~~~ 292 (1124)
.++++|||+++++++.++++.+||. .+++.. ..+.... .++||| ||+++++++ .+++|.+||..+ .+.+
T Consensus 183 ~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-~~~~ 261 (543)
T 1nir_A 183 ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-LEPK 261 (543)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-CCEE
T ss_pred eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-cccc
Confidence 4667799999999999999999999 665443 2234445 999999 999999988 489999999987 7777
Q ss_pred EEEeeccCCCC--CCCC-CCeEEEEECCCCC-EEEEEECCCcEEEEEcCCCeeeE--EeccCCcCceeeeEEcCCCCCCc
Q 001202 293 RTVSLYDWGYS--MDDT-GPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMS--TIRQISLSSISSPIVKPNQDCKY 366 (1124)
Q Consensus 293 ~~l~~~~~g~~--~~h~-g~V~~lawSPDG~-~Lasgs~Dg~I~vWdv~~~~l~~--tl~~h~~~~V~s~~~sp~~~~~~ 366 (1124)
.++........ .-|. ..|..+.+||||. ++++...++.|.+||+.+...+. ++. + ...+.+++|+|++
T Consensus 262 ~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~-~~~~~~~~~spdg---- 335 (543)
T 1nir_A 262 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-A-APFLHDGGWDSSH---- 335 (543)
T ss_dssp EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-C-CSSCCCEEECTTS----
T ss_pred eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-c-CcCccCceECCCC----
Confidence 77763210000 0022 3789999999876 55666778999999998765433 443 2 3567889999998
Q ss_pred ceEEEee----eEEEEeCCCCeEEEEecC----CcceEEE-Eec--cceEEeec-cCCceeeeEeeecCCeEEEeecCCC
Q 001202 367 EPLMSGT----SMMQWDEYGYRLYAIEEG----SSERVLI-FSF--GKCCLNRG-VSGMTYARQVIYGEDRLLVVQSEDT 434 (1124)
Q Consensus 367 ~~l~sg~----~i~~W~~~~~~l~~~~~~----~~~~v~~-~s~--~k~~~s~s-~d~~v~~w~l~~~~~~l~l~~~~~~ 434 (1124)
+++..+. ++.+|+..++++...... |..+... +++ ++..++++ .|+++.+|+......
T Consensus 336 ~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~---------- 405 (543)
T 1nir_A 336 RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH---------- 405 (543)
T ss_dssp CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC----------
T ss_pred CEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCC----------
Confidence 6554322 889999999998877653 4433333 333 55566665 578999999765221
Q ss_pred ccceeeecccceeeccCCCceEEEEEccCCCEEEEEcC-------CCeE-EEEcCCCcEE--EecCcC-----ceeeeEE
Q 001202 435 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL-------HGLI-LYDIRQKKWR--VFGDIT-----QEQKIQS 499 (1124)
Q Consensus 435 ~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~-------dG~v-lwd~~sg~wk--~f~~~~-----~e~~~~v 499 (1124)
++..|+ +..++.+|...+..+++||||++|++++. ++.| +||+.+++.. .+ +.. .+..-.+
T Consensus 406 ~~~~~~---~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~v~~~~~~~~~~~~~ 481 (543)
T 1nir_A 406 PQYAWK---KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL-PIAEWADLGEGAKRV 481 (543)
T ss_dssp TTTBTS---EEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE-CHHHHHCCCSSCCEE
T ss_pred chhcCe---EEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEe-echhhcccCCCCCce
Confidence 011122 23455667777788999999999999972 6688 9999987632 11 010 1212246
Q ss_pred EEEEec--CCEEEEEEEecCCCeEEEEEeeCC
Q 001202 500 KGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 500 ~gl~W~--~~~liv~~~~~~~~~~elrly~~~ 529 (1124)
.++.+. ++.+.+++....+.+..|.+|+..
T Consensus 482 ~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~ 513 (543)
T 1nir_A 482 VQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK 513 (543)
T ss_dssp EEEEECSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred EeccCCCCCCEEEEEeecCCCCCCeEEEEECC
Confidence 666775 667877766443445689999875
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.69 E-value=7.5e-16 Score=194.25 Aligned_cols=314 Identities=11% Similarity=0.051 Sum_probs=178.6
Q ss_pred eeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEe
Q 001202 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL 149 (1124)
Q Consensus 70 ~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t 149 (1124)
...++|||||+++++ +.+|.|++||+.++........+..... ...-.++++|++.++.++
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~------------------~v~~~~~SpDg~~l~~~~ 79 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESL------------------RAIRYEISPDREYALFSY 79 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTT------------------TCSEEEECTTSSEEEEEE
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEecccccccc------------------ccceEEECCCCCEEEEEe
Confidence 467999999997776 7899999999987654322222111000 012335677888888887
Q ss_pred cC---------CcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCc
Q 001202 150 SD---------GSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM 220 (1124)
Q Consensus 150 ~d---------g~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~ 220 (1124)
.+ +.+.+ |+........+..... +...+.
T Consensus 80 ~~~~~~~~~~~~~i~~--~d~~~~~~~~l~~~~~--------------------------------~~~~~~-------- 117 (723)
T 1xfd_A 80 NVEPIYQHSYTGYYVL--SKIPHGDPQSLDPPEV--------------------------------SNAKLQ-------- 117 (723)
T ss_dssp SCCCCSSSCCCSEEEE--EESSSCCCEECCCTTC--------------------------------CSCCCS--------
T ss_pred cCccceeecceeeEEE--EECCCCceEeccCCcc--------------------------------cccccc--------
Confidence 64 44444 5543332211110000 111121
Q ss_pred ceEEEEecCCcEEEEEecCCceEeeecccccee---cC-CCCe------------------EEEEEccCCCEEEEEecCC
Q 001202 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LG-SGDA------------------VCASIAPEQQILAVGTRRG 278 (1124)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~g-h~~~------------------v~va~spdg~lLAsGs~Dg 278 (1124)
.++++|||+.+++.+. +++.+|+..+++.. .+ +... .+++|||||+.||+++.|+
T Consensus 118 --~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~ 194 (723)
T 1xfd_A 118 --YAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND 194 (723)
T ss_dssp --BCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC
T ss_pred --ccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECC
Confidence 2233455655555443 45666655443321 11 1111 2566777776666665442
Q ss_pred ----------------------------------eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEE
Q 001202 279 ----------------------------------VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (1124)
Q Consensus 279 ----------------------------------tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Las 324 (1124)
+|++||+.+ ++....+.... ....|.+.|.+++|||||+.|++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~-~~~~~~l~~~~--~~~~~~~~~~~~~~SpDg~~l~~ 271 (723)
T 1xfd_A 195 SRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPD--DPRMREYYITMVKWATSTKVAVT 271 (723)
T ss_dssp TTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCC--CGGGSSEEEEEEEESSSSEEEEE
T ss_pred CccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC-CceeEEeeCCc--cCCCccceeEEEEEeCCCeEEEE
Confidence 789999877 55444443110 00113677999999999999877
Q ss_pred EECC----CcEEEEEcCCCeeeEEeccCCcCce----eeeEEcCCCCCCcceEEE--ee---------eEEEEe-CCCCe
Q 001202 325 GWKS----RGLTVWSVSGCRLMSTIRQISLSSI----SSPIVKPNQDCKYEPLMS--GT---------SMMQWD-EYGYR 384 (1124)
Q Consensus 325 gs~D----g~I~vWdv~~~~l~~tl~~h~~~~V----~s~~~sp~~~~~~~~l~s--g~---------~i~~W~-~~~~~ 384 (1124)
...+ ..|.+||+.++++...+..++...+ .+++|+|++ +.++. +. .+..|+ ..+++
T Consensus 272 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 347 (723)
T 1xfd_A 272 WLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDG----RKFFFIRAIPQGGRGKFYHITVSSSQPNSS 347 (723)
T ss_dssp EEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTS----CSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred EEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCC----CeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence 7543 5799999999887766654323334 378999998 54442 11 355677 44544
Q ss_pred ---EEEEecCCcce--EEEEec-cceEEeeccC---CceeeeEeeecCCeEEEeecCCCccceeeecccceeecc---CC
Q 001202 385 ---LYAIEEGSSER--VLIFSF-GKCCLNRGVS---GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS---QN 452 (1124)
Q Consensus 385 ---l~~~~~~~~~~--v~~~s~-~k~~~s~s~d---~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~---~~ 452 (1124)
......++... +..+++ ++.++..+.+ +..++|.+...... .+..+.. |.
T Consensus 348 ~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~------------------~~~~l~~~~~~~ 409 (723)
T 1xfd_A 348 NDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF------------------NRQCLSCDLVEN 409 (723)
T ss_dssp SCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC------------------CCBCSSTTSSSS
T ss_pred ccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC------------------CcceecccccCC
Confidence 32222222222 246777 7777654443 67888887543210 0111221 45
Q ss_pred CceEEEEEccCCCEEEEEcC
Q 001202 453 WPVQHVAASKDGMFLAVAGL 472 (1124)
Q Consensus 453 ~~I~~va~SpdG~~lAvag~ 472 (1124)
..+..++|||||++++....
T Consensus 410 ~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 410 CTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp CCCCEEEECTTSSEEEEECC
T ss_pred CCeEEEEECCCCCEEEEEcc
Confidence 66888999999999987654
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.69 E-value=9.3e-15 Score=183.85 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=81.1
Q ss_pred CCceEeeecccccee-----cCCCCeE-EEEEccCCCEEEEEecCC-----eEEEEEcCCCCceeEEEeeccCCCCCCCC
Q 001202 239 KKGLKLAEFIKIDKE-----LGSGDAV-CASIAPEQQILAVGTRRG-----VVELYDLAESASLIRTVSLYDWGYSMDDT 307 (1124)
Q Consensus 239 d~~i~~wd~~~~~~~-----~gh~~~v-~va~spdg~lLAsGs~Dg-----tV~vwd~~~~~~~~~~l~~~~~g~~~~h~ 307 (1124)
+..+.+||..+++.. .+|...+ +++|+|||+.|++++.|+ +|.+||+.+ ++....+.... . ....
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~-~--~~~~ 309 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVET-D--KHYV 309 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEE-C--SSCC
T ss_pred eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEcc-C--CCeE
Confidence 356888888766532 2466677 999999999999988886 999999987 52333332110 0 0012
Q ss_pred CCeEEEEECC--CCCEEEEEECCCcEEEEEcC-CCeeeEEeccCCcCceee-eEEcCCC
Q 001202 308 GPVSCIAWTP--DNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLSSISS-PIVKPNQ 362 (1124)
Q Consensus 308 g~V~~lawSP--DG~~Lasgs~Dg~I~vWdv~-~~~l~~tl~~h~~~~V~s-~~~sp~~ 362 (1124)
..+.+++||| ||+++++++.|+.++||.+. ++.....+..+ ...+.+ ++|+|++
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~-~~~v~~~~~~spdg 367 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG-EWEVTNFAGFDPKG 367 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS-SSCEEEEEEECTTS
T ss_pred CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC-CeEEEeeeEEcCCC
Confidence 2357789999 99999999999999999886 55556666554 333433 4555554
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.67 E-value=1.1e-14 Score=160.08 Aligned_cols=245 Identities=10% Similarity=0.052 Sum_probs=161.0
Q ss_pred CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeee-cCceeecCCCCCCCcceee
Q 001202 39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI-TEKSIQIGGKQPSGLFFIK 117 (1124)
Q Consensus 39 ~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~-~~~~~~~~~~~~~~~~~~~ 117 (1124)
+++|.+|+.. .+... .... +.+.+.+++|||||++|+++. ++.|.+|++.. +........+..
T Consensus 21 ~~~i~~~d~~-~~~~~-~~~~------~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~------- 84 (297)
T 2ojh_A 21 RSSIEIFNIR-TRKMR-VVWQ------TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFAT------- 84 (297)
T ss_dssp CEEEEEEETT-TTEEE-EEEE------ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCC-------
T ss_pred ceeEEEEeCC-CCcee-eecc------CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccc-------
Confidence 4579999985 44332 2211 246678999999999999986 78999999976 432211111100
Q ss_pred EEEEeeeeeecccccceEEEEeecCCeEEEEe--cCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccC
Q 001202 118 ISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL--SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT 195 (1124)
Q Consensus 118 ~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t--~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~ 195 (1124)
......++.++++.++++. .++...++.|+........
T Consensus 85 -------------~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~--------------------------- 124 (297)
T 2ojh_A 85 -------------ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL--------------------------- 124 (297)
T ss_dssp -------------CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE---------------------------
T ss_pred -------------ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE---------------------------
Confidence 0011235666788888887 3456666666643221110
Q ss_pred CCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEE-EEecCCceEeeecc--ccce--ecCCCCeE-EEEEccCCC
Q 001202 196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMS-CSVSKKGLKLAEFI--KIDK--ELGSGDAV-CASIAPEQQ 269 (1124)
Q Consensus 196 ~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~-~~~~d~~i~~wd~~--~~~~--~~gh~~~v-~va~spdg~ 269 (1124)
+... ..+.. ++++|||+.++ ++..++.+++|+.. +.+. ...|...+ +++|+|+++
T Consensus 125 --------~~~~-~~~~~----------~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 185 (297)
T 2ojh_A 125 --------MTKN-LPSYW----------HGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGR 185 (297)
T ss_dssp --------CCSS-SSEEE----------EEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSS
T ss_pred --------eecC-CCccc----------eEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCC
Confidence 0111 12333 34568888766 56677888888753 2222 24566677 999999999
Q ss_pred EEEEEe-cCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC-----------CcEEEEEcC
Q 001202 270 ILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-----------RGLTVWSVS 337 (1124)
Q Consensus 270 lLAsGs-~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D-----------g~I~vWdv~ 337 (1124)
.|++++ .|+.+++|+++..+.....+. + |...+.+++|+|||++|++++.+ +.|.+||+.
T Consensus 186 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~----~----~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~ 257 (297)
T 2ojh_A 186 WIYFNSSRTGQMQIWRVRVDGSSVERIT----D----SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMD 257 (297)
T ss_dssp EEEEEECTTSSCEEEEEETTSSCEEECC----C----CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred EEEEEecCCCCccEEEECCCCCCcEEEe----c----CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecC
Confidence 888776 599999999974355555544 3 67789999999999999988876 469999998
Q ss_pred CCee--eEEeccCCcCceeeeEEcCCCCCCcceEEE
Q 001202 338 GCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (1124)
Q Consensus 338 ~~~l--~~tl~~h~~~~V~s~~~sp~~~~~~~~l~s 371 (1124)
++.. +..+.+| ...+.+++|+|++ +.++.
T Consensus 258 ~~~~~~~~~~~~~-~~~~~~~~~spdg----~~l~~ 288 (297)
T 2ojh_A 258 GGNVETLFDLFGG-QGTMNSPNWSPDG----DEFAY 288 (297)
T ss_dssp SCSCEEEEEEEES-TTTSCSCCBCTTS----SEEEE
T ss_pred CCCceeeeccCCC-CcccccceECCCC----CEEEE
Confidence 8765 3344455 5678888999987 65554
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.64 E-value=5.1e-14 Score=178.06 Aligned_cols=264 Identities=12% Similarity=0.083 Sum_probs=176.2
Q ss_pred EEEEecCCcEEEEEecCCceEeeecccc---ce--ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEe
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKI---DK--ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS 296 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~---~~--~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~ 296 (1124)
.++++|||+.+++++. +++.+|+..++ +. +.+|...+ +++|||||+.||+++ +++|.+||+++ +.......
T Consensus 113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~-g~~~~~~~ 189 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS-GRQMQLTA 189 (741)
T ss_dssp CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT-TEEEECCC
T ss_pred eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC-CCEEEecc
Confidence 4567799998888776 88999998766 32 35676777 999999999999987 56999999987 54333221
Q ss_pred eccCCCCCCCCC----------------CeEEEEECCCCCEEEEEECCC-------------------------------
Q 001202 297 LYDWGYSMDDTG----------------PVSCIAWTPDNSAFAVGWKSR------------------------------- 329 (1124)
Q Consensus 297 ~~~~g~~~~h~g----------------~V~~lawSPDG~~Lasgs~Dg------------------------------- 329 (1124)
+ +.. .+.+++|||||+.|++++.|+
T Consensus 190 ----~----~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 190 ----D----GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp ----C----CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred ----C----CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 1 222 247899999999999998776
Q ss_pred --cEEEEEcCC-CeeeEEecc-CCcCceeeeEEcCCCCCCcceEEEee--------eEEEEeCCCCeEEEEecCCcc---
Q 001202 330 --GLTVWSVSG-CRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSGT--------SMMQWDEYGYRLYAIEEGSSE--- 394 (1124)
Q Consensus 330 --~I~vWdv~~-~~l~~tl~~-h~~~~V~s~~~sp~~~~~~~~l~sg~--------~i~~W~~~~~~l~~~~~~~~~--- 394 (1124)
.|.+||+.+ ++......+ .+...+.+++| |++ +.++.+. .+.+|+..++++......+..
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg----~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 336 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP----QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWV 336 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET----TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC----CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcC
Confidence 789999988 775544332 12567899999 998 6665322 688999998887665543322
Q ss_pred -e--EEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEE-EEccCCCEEEE
Q 001202 395 -R--VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV-AASKDGMFLAV 469 (1124)
Q Consensus 395 -~--v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~v-a~SpdG~~lAv 469 (1124)
. -..|++ ++.+++++.++..++|.+..... +..+..+.+.|..+ +|||||+.++.
T Consensus 337 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~--------------------~~~l~~~~~~v~~~~~~s~dg~~l~~ 396 (741)
T 2ecf_A 337 PLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK--------------------AAALTHGNWSVDELLAVDEKAGLAYF 396 (741)
T ss_dssp CCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC--------------------EEESCCSSSCEEEEEEEETTTTEEEE
T ss_pred CcCCceEECCCCeEEEEecCCCccEEEEEcCCCC--------------------eeeeeecceEEEeEeEEeCCCCEEEE
Confidence 1 245666 77777888888888887642211 22344567888887 59999998865
Q ss_pred -EcCCC--eE-EEEcCC-Cc-EEEecCcCceeeeEEEEEEec--CCEEEEEEEecCCCeEEEEEeeC
Q 001202 470 -AGLHG--LI-LYDIRQ-KK-WRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 470 -ag~dG--~v-lwd~~s-g~-wk~f~~~~~e~~~~v~gl~W~--~~~liv~~~~~~~~~~elrly~~ 528 (1124)
++.++ .+ +|++.. ++ -+.+.. .. .+..+.|. ++.+++.+.. ...-.++.+++.
T Consensus 397 ~~~~~~~~~~~l~~~~~~g~~~~~l~~---~~--~~~~~~~spdg~~l~~~~~~-~~~p~~~~l~~~ 457 (741)
T 2ecf_A 397 RAGIESARESQIYAVPLQGGQPQRLSK---AP--GMHSASFARNASVYVDSWSN-NSTPPQIELFRA 457 (741)
T ss_dssp EECSSCTTCBEEEEEETTCCCCEECCC---SC--SEEEEEECTTSSEEEEEEEE-TTEEEEEEEEET
T ss_pred EEeCCCCceEEEEEEEcCCCCeeeccc---CC--CceEEEECCCCCEEEEEecC-CCCCCeEEEEEc
Confidence 44554 67 998864 32 222221 11 13455665 4455554332 223345555544
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.63 E-value=1.8e-13 Score=154.59 Aligned_cols=151 Identities=13% Similarity=0.114 Sum_probs=100.5
Q ss_pred EEEecCCcEEEEEecC-C--ceEeeecccccee---cCCCCeEEEEEccCCCEE-EEEecCCe-EEEEEcCCCCceeEEE
Q 001202 224 FVLYSNGQLMSCSVSK-K--GLKLAEFIKIDKE---LGSGDAVCASIAPEQQIL-AVGTRRGV-VELYDLAESASLIRTV 295 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d-~--~i~~wd~~~~~~~---~gh~~~v~va~spdg~lL-AsGs~Dgt-V~vwd~~~~~~~~~~l 295 (1124)
++++|||+.+++...+ + .+.+||..+++.. ..+..+.+++|+|+|+.+ +++..++. |.+|+++..+.....
T Consensus 89 ~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~- 167 (331)
T 3u4y_A 89 VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT- 167 (331)
T ss_dssp EEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE-
T ss_pred eEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec-
Confidence 5677999988854444 2 8999998776543 233444599999999854 45556688 999999874433221
Q ss_pred eeccCCCCCCCCCCeEEEEECCCCCEEEEE-ECCCcEEEEEcCCCee---eEEeccCCcCceeeeEEcCCCCCCcceEE-
Q 001202 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDCKYEPLM- 370 (1124)
Q Consensus 296 ~~~~~g~~~~h~g~V~~lawSPDG~~Lasg-s~Dg~I~vWdv~~~~l---~~tl~~h~~~~V~s~~~sp~~~~~~~~l~- 370 (1124)
...... +.....+++|+|||++++++ ..++.|.+||+.+++. +.++..+ ..+..++|+|++ +.+.
T Consensus 168 ~~~~~~----~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg----~~l~v 237 (331)
T 3u4y_A 168 GQEFIS----GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDG----STVYV 237 (331)
T ss_dssp EEEEEC----SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTS----SEEEE
T ss_pred CCcccc----CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC--CCCceEEECCCC----CEEEE
Confidence 100001 33457999999999966554 4688999999998887 7777653 456788888887 5332
Q ss_pred Eee---eEEEEeCCCCeE
Q 001202 371 SGT---SMMQWDEYGYRL 385 (1124)
Q Consensus 371 sg~---~i~~W~~~~~~l 385 (1124)
+.. .+.+|+..++++
T Consensus 238 ~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 238 LTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp ECSSEEEEEEEETTTTEE
T ss_pred EEcCCCEEEEEECCCCce
Confidence 211 455666655543
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.62 E-value=3.7e-13 Score=151.97 Aligned_cols=276 Identities=12% Similarity=0.103 Sum_probs=160.7
Q ss_pred eEEEE-EcCCcEEEEecCCCc--eeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCC-CeEEEEEeeecCceeecCC
Q 001202 32 GLLLI-ASPCHIELWSSSQHK--VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS-LYLHIFKVQITEKSIQIGG 107 (1124)
Q Consensus 32 ~llA~-~~~~~l~IW~~~~~~--~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d-g~l~i~~v~~~~~~~~~~~ 107 (1124)
.++++ ..+++|++|+.+..+ ..+... ...+....++|+|||++|++++.+ +.|.+|++.......
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~---- 74 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVV-------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL---- 74 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEE-------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE----
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeE-------ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce----
Confidence 34555 346789999985222 112111 123456789999999999998887 999999997321100
Q ss_pred CCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEec-CCcEEEEeccCccccceeeccCCCCccccccccccC
Q 001202 108 KQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFP 186 (1124)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~-dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~ 186 (1124)
..+ ....... ...-.++.++++.++++.. ++.+.+|+.+ . ...... +.
T Consensus 75 --------~~~-----~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~-~~~~~~---------~~------ 123 (343)
T 1ri6_A 75 --------TFA-----AESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE-D-GLPVGV---------VD------ 123 (343)
T ss_dssp --------EEE-----EEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE-T-TEEEEE---------EE------
T ss_pred --------eec-----cccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC-C-Cccccc---------cc------
Confidence 000 0001111 1223456677887877765 7788876553 1 111100 00
Q ss_pred CCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEe-cCCceEeeeccc-cce-------e-cCC
Q 001202 187 SNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIK-IDK-------E-LGS 256 (1124)
Q Consensus 187 ~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~-~d~~i~~wd~~~-~~~-------~-~gh 256 (1124)
.......+ ..++++|||+.++++. .++.+.+|+..+ ++. . ...
T Consensus 124 -----------------~~~~~~~~----------~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 176 (343)
T 1ri6_A 124 -----------------VVEGLDGC----------HSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE 176 (343)
T ss_dssp -----------------EECCCTTB----------CCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST
T ss_pred -----------------cccCCCCc----------eEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC
Confidence 00011112 2345568888666665 778888888765 321 1 122
Q ss_pred CCeE-EEEEccCCCEEEEE-ecCCeEEEEEcCCC-Cce--eEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE-CCCc
Q 001202 257 GDAV-CASIAPEQQILAVG-TRRGVVELYDLAES-ASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRG 330 (1124)
Q Consensus 257 ~~~v-~va~spdg~lLAsG-s~DgtV~vwd~~~~-~~~--~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs-~Dg~ 330 (1124)
.... +++|+|++++++++ ..++.|.+|+++.. +.. .........+ ......+.+++|+|||++|+++. .|+.
T Consensus 177 ~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~i~~s~dg~~l~v~~~~~~~ 254 (343)
T 1ri6_A 177 GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN--FSDTRWAADIHITPDGRHLYACDRTASL 254 (343)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT--CCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc--ccccCCccceEECCCCCEEEEEecCCCE
Confidence 3345 89999999976554 48999999999642 222 2222211111 01234577899999999887544 7899
Q ss_pred EEEEEcC--CC--eeeEEeccCCcCceeeeEEcCCCCCCcceEEEee----eEEEE--eCCCCe
Q 001202 331 LTVWSVS--GC--RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQW--DEYGYR 384 (1124)
Q Consensus 331 I~vWdv~--~~--~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~----~i~~W--~~~~~~ 384 (1124)
|.+|++. ++ +.+..+..+ ..+.+++|+|++ +.+..+. .+.+| +.++++
T Consensus 255 i~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 255 ITVFSVSEDGSVLSKEGFQPTE--TQPRGFNVDHSG----KYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp EEEEEECTTSCCEEEEEEEECS--SSCCCEEECTTS----SEEEEECTTTCEEEEEEEETTTTE
T ss_pred EEEEEEcCCCCceEEeeeecCC--CccceEEECCCC----CEEEEecCCCCeEEEEEEcCCCce
Confidence 9999998 33 445555544 237888999987 5444322 66677 444443
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.62 E-value=4.2e-14 Score=173.88 Aligned_cols=245 Identities=13% Similarity=0.063 Sum_probs=163.0
Q ss_pred CceEEEEeeCCeEEEEEc--CCcEEEEecCCCceeEEEEeeChHHHhhh-cceeEEEEecCCcEEEEEeC---CCeEEEE
Q 001202 21 SQQIIYFKVNNGLLLIAS--PCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKLIAVVTS---SLYLHIF 94 (1124)
Q Consensus 21 ~~~iv~fS~dg~llA~~~--~~~l~IW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wSPDg~~Lav~t~---dg~l~i~ 94 (1124)
+...|.|||||+.||.++ ++++.||+.. .+.. .... ..+ +.+..+.|||| +.++++.. +...++|
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~-~g~~-~~lt------~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYD-GGET-VKLN------REPINSVLDPHYGVG-RVILVRDVSKGAEQHALF 93 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEE-TTEE-EECC------SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEE
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEc-CCCc-Eeee------cccccccccccCCCC-eEEEEeccCCCCcceEEE
Confidence 345588999999999865 5689999984 4322 1111 122 35678999999 77777765 4567888
Q ss_pred Eeee--cCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEE-ecCCcEEEEeccCccccceeecc
Q 001202 95 KVQI--TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG-LSDGSLYSISWKGEFYGAFELVH 171 (1124)
Q Consensus 95 ~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~-t~dg~v~~~~Wd~~~~~~~~l~~ 171 (1124)
.+.. ....... .......+.+++++++.++.. ..++.+.+ |+.+......
T Consensus 94 ~~~~~~~g~~~~l----------------------~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l--~d~~~g~~~~--- 146 (582)
T 3o4h_A 94 KVNTSRPGEEQRL----------------------EAVKPMRILSGVDTGEAVVFTGATEDRVAL--YALDGGGLRE--- 146 (582)
T ss_dssp EEETTSTTCCEEC----------------------TTSCSBEEEEEEECSSCEEEEEECSSCEEE--EEEETTEEEE---
T ss_pred EEeccCCCccccc----------------------cCCCCceeeeeCCCCCeEEEEecCCCCceE--EEccCCcEEE---
Confidence 8765 2211100 001112355788888765444 34444544 4432221110
Q ss_pred CCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecC----CceEeeec
Q 001202 172 SSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK----KGLKLAEF 247 (1124)
Q Consensus 172 ~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d----~~i~~wd~ 247 (1124)
+.-.+. ..++++|||+.+++++.+ .++.+||.
T Consensus 147 ------------------------------------------l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~ 182 (582)
T 3o4h_A 147 ------------------------------------------LARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNL 182 (582)
T ss_dssp ------------------------------------------EEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEET
T ss_pred ------------------------------------------eecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcC
Confidence 001111 356778999999977766 67888987
Q ss_pred cccce--ecCCCCeE-EEEEccCCCEEEEEecCC--eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEE--------
Q 001202 248 IKIDK--ELGSGDAV-CASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA-------- 314 (1124)
Q Consensus 248 ~~~~~--~~gh~~~v-~va~spdg~lLAsGs~Dg--tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~la-------- 314 (1124)
.+++. +.+|...+ .++|||||+.||++..+| +|.+||+++ ++.. .+. + |.+.|..++
T Consensus 183 ~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~----~----~~~~~~~~~~~~~~~~~ 252 (582)
T 3o4h_A 183 SSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD-GSVE-DLE----L----PSKDFSSYRPTAITWLG 252 (582)
T ss_dssp TTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECC----C----SCSHHHHHCCSEEEEEE
T ss_pred CCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC-CcEE-Ecc----C----CCcChhhhhhcccccee
Confidence 66543 46788888 999999999999888899 899999987 5544 333 3 666677777
Q ss_pred ECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 315 WTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 315 wSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
|||||..+++++.|+++++|++ +++..+. ...+.+++|+ ++
T Consensus 253 ~spdg~~~~~~~~~g~~~l~~~--g~~~~~~----~~~v~~~~~s-dg 293 (582)
T 3o4h_A 253 YLPDGRLAVVARREGRSAVFID--GERVEAP----QGNHGRVVLW-RG 293 (582)
T ss_dssp ECTTSCEEEEEEETTEEEEEET--TEEECCC----SSEEEEEEEE-TT
T ss_pred EcCCCcEEEEEEcCCcEEEEEE--CCeeccC----CCceEEEEec-CC
Confidence 9999999999999999999999 5544322 2457777887 65
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.62 E-value=1.9e-13 Score=155.93 Aligned_cols=243 Identities=15% Similarity=0.144 Sum_probs=151.7
Q ss_pred EEEEecCCcEEEEEec--CCceEeeeccccce--e---cCCCCeE-EEEEccCCCEEEEEe-cCCeEEEEEcCCCCceeE
Q 001202 223 LFVLYSNGQLMSCSVS--KKGLKLAEFIKIDK--E---LGSGDAV-CASIAPEQQILAVGT-RRGVVELYDLAESASLIR 293 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~--d~~i~~wd~~~~~~--~---~gh~~~v-~va~spdg~lLAsGs-~DgtV~vwd~~~~~~~~~ 293 (1124)
.++++|||+++++... ++.+.+|+...++. . ..+.... .++|+|+|++|++++ .+++|++|+++..+....
T Consensus 44 ~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~ 123 (347)
T 3hfq_A 44 YLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL 123 (347)
T ss_dssp CEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred eEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee
Confidence 4667789984444432 57888998865432 1 2345555 999999999888887 789999999975343222
Q ss_pred EEeeccCCCC---CCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcC-CCeee--EEeccCCcCceeeeEEcCCCCCCcc
Q 001202 294 TVSLYDWGYS---MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLM--STIRQISLSSISSPIVKPNQDCKYE 367 (1124)
Q Consensus 294 ~l~~~~~g~~---~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~-~~~l~--~tl~~h~~~~V~s~~~sp~~~~~~~ 367 (1124)
.......+.. ..+...+.+++|+|||+.++++..++.|.+|++. ++.+. ..+..........++|+|++ +
T Consensus 124 ~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg----~ 199 (347)
T 3hfq_A 124 TDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG----Q 199 (347)
T ss_dssp EEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS----S
T ss_pred cceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC----C
Confidence 1111111100 0122348899999999966666678899999998 55432 22222223357789999998 6
Q ss_pred eEEE-ee---eEEEEeCC--CCeEEEE--ecCCc------ceE--EEEec-cceE-EeeccCCceeeeEeeecCCeEEEe
Q 001202 368 PLMS-GT---SMMQWDEY--GYRLYAI--EEGSS------ERV--LIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVV 429 (1124)
Q Consensus 368 ~l~s-g~---~i~~W~~~--~~~l~~~--~~~~~------~~v--~~~s~-~k~~-~s~s~d~~v~~w~l~~~~~~l~l~ 429 (1124)
.+.. +. .+.+|+.+ ++++... ..... ..+ +++++ ++.+ ++...++.+.+|++..... +.
T Consensus 200 ~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~-~~-- 276 (347)
T 3hfq_A 200 YAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH-LT-- 276 (347)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC-EE--
T ss_pred EEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc-EE--
Confidence 4433 22 77788765 3554222 11111 223 56677 7765 5666688899998753221 00
Q ss_pred ecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCC-CeE-EE--EcCCCcEE
Q 001202 430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH-GLI-LY--DIRQKKWR 486 (1124)
Q Consensus 430 ~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~d-G~v-lw--d~~sg~wk 486 (1124)
....+..+...++.++|||||++|++++.+ +.+ +| |..+|+..
T Consensus 277 --------------~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 277 --------------LIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp --------------EEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred --------------EeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 112222334456789999999999988865 788 99 55566654
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.61 E-value=2.4e-13 Score=170.98 Aligned_cols=307 Identities=9% Similarity=0.001 Sum_probs=171.3
Q ss_pred eEEEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeee----
Q 001202 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI---- 98 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~---- 98 (1124)
.-++|||| +.++.+.++++.+|+.. .+... .... ..+.+..++|||||+.||.+ .++.|.+|++..
T Consensus 85 ~~~~~spd-~~~~~~~~~~i~~~d~~-~~~~~-~l~~------~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 85 FRTLDAGR-GLVVLFTQGGLVGFDML-ARKVT-YLFD------TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp EEEEETTT-TEEEEEETTEEEEEETT-TTEEE-EEEC------CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred eeEEECCC-CeEEEEECCEEEEEECC-CCceE-EccC------CcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence 44789999 55555567899999995 44322 2211 12446689999999999995 679999999986
Q ss_pred -cCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCC-c---EEEEeccCccccceeeccCC
Q 001202 99 -TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG-S---LYSISWKGEFYGAFELVHSS 173 (1124)
Q Consensus 99 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg-~---v~~~~Wd~~~~~~~~l~~~~ 173 (1124)
+............ ...... ...+ ........++++|++.++.++.|. . ........... .
T Consensus 155 ~g~~~~~~~~~~~~--~~~g~~-~~~e----e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~-~------- 219 (706)
T 2z3z_A 155 MSRAIAVTIDGTET--LVYGQA-VHQR----EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEA-E------- 219 (706)
T ss_dssp CCCCEESCSCCBTT--EEESSC-CGGG----CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSC-E-------
T ss_pred CCCcEEeccCCCCC--eEcccc-hhhh----hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCC-c-------
Confidence 4322111111000 000000 0000 000012335677888888776321 1 11111110000 0
Q ss_pred CCccccccccccCC------CCccccc-CCCCeeeccc-CCCCceEEEEEecCCcceEEEEecCCcEEEEEecCC-----
Q 001202 174 NDSSVAALSHHFPS------NGLASVD-TSGAFVSDHK-FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK----- 240 (1124)
Q Consensus 174 ~~~~~i~~i~fs~~------~ql~s~~-~~~~~~~~~~-~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~----- 240 (1124)
.....+... .++.... ..+....... ..+...+.+ ++++|||+.++++..+.
T Consensus 220 -----~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~----------~~~spdg~~l~~~~~~~~~~~~ 284 (706)
T 2z3z_A 220 -----SKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN----------LSWSPDENILYVAEVNRAQNEC 284 (706)
T ss_dssp -----EEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE----------EEECTTSSEEEEEEECTTSCEE
T ss_pred -----eEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee----------EEEECCCCEEEEEEeCCCCCee
Confidence 000000000 0000000 0000000000 123334444 44557888777665543
Q ss_pred ceEeeecccc-cee--c--CCC---CeE-EEEEcc--CCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCC
Q 001202 241 GLKLAEFIKI-DKE--L--GSG---DAV-CASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP 309 (1124)
Q Consensus 241 ~i~~wd~~~~-~~~--~--gh~---~~v-~va~sp--dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~ 309 (1124)
++.+||..++ ... . .+. +.+ +++|+| ||+++++++.||.++||.++..++....+. + |...
T Consensus 285 ~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~----~----~~~~ 356 (706)
T 2z3z_A 285 KVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT----K----GEWE 356 (706)
T ss_dssp EEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC----C----SSSC
T ss_pred EEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC----C----CCeE
Confidence 7888888766 221 1 111 223 689999 999999999999999999874366566554 3 6667
Q ss_pred eEE-EEECCCCCEEEEEECC-C----cEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee-------eEE
Q 001202 310 VSC-IAWTPDNSAFAVGWKS-R----GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-------SMM 376 (1124)
Q Consensus 310 V~~-lawSPDG~~Lasgs~D-g----~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~-------~i~ 376 (1124)
|.+ ++|+|||+.|+.++.+ + .|..|+..++. ...+. + ...+.+++|+|++ +.++... .+.
T Consensus 357 v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~-~~~~~~~~~spdg----~~l~~~~~~~~~p~~i~ 429 (706)
T 2z3z_A 357 VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-P-ESGMHRTQLSPDG----SAIIDIFQSPTVPRKVT 429 (706)
T ss_dssp EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-C-SSSEEEEEECTTS----SEEEEEEECSSCSCEEE
T ss_pred EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-C-CCceEEEEECCCC----CEEEEEecCCCCCcEEE
Confidence 876 8999999988766554 3 56666777765 33443 3 4568899999998 6555432 478
Q ss_pred EEeCCCCe
Q 001202 377 QWDEYGYR 384 (1124)
Q Consensus 377 ~W~~~~~~ 384 (1124)
+|+..+++
T Consensus 430 l~d~~~~~ 437 (706)
T 2z3z_A 430 VTNIGKGS 437 (706)
T ss_dssp EEESSSCE
T ss_pred EEECCCCe
Confidence 89988877
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.61 E-value=1.3e-13 Score=155.65 Aligned_cols=236 Identities=14% Similarity=0.135 Sum_probs=151.6
Q ss_pred EEEEecCCcEEEEEecC-CceEeeecc--ccce--e---cCCCCeE-EEEEccCCCEEEEEec-CCeEEEEEcCCCCcee
Q 001202 223 LFVLYSNGQLMSCSVSK-KGLKLAEFI--KIDK--E---LGSGDAV-CASIAPEQQILAVGTR-RGVVELYDLAESASLI 292 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d-~~i~~wd~~--~~~~--~---~gh~~~v-~va~spdg~lLAsGs~-DgtV~vwd~~~~~~~~ 292 (1124)
.++++|||+.++++..+ +.+.+|+.. +++. . ..+. .+ +++|+|+++.+++++. ++.|.+|++++ +...
T Consensus 42 ~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~ 119 (343)
T 1ri6_A 42 PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLED-GLPV 119 (343)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEET-TEEE
T ss_pred eEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCC-Cccc
Confidence 35666888877777665 889999876 3321 1 2233 45 9999999998776654 89999999963 3322
Q ss_pred EEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE-CCCcEEEEEcCC-CeeeE----EeccCCcCceeeeEEcCCCCCCc
Q 001202 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSG-CRLMS----TIRQISLSSISSPIVKPNQDCKY 366 (1124)
Q Consensus 293 ~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs-~Dg~I~vWdv~~-~~l~~----tl~~h~~~~V~s~~~sp~~~~~~ 366 (1124)
....... ....+.+++|+|||+.+++++ .|+.|.+|++.+ +.... .+..+....+..++|+|++
T Consensus 120 ~~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg---- 189 (343)
T 1ri6_A 120 GVVDVVE------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE---- 189 (343)
T ss_dssp EEEEEEC------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS----
T ss_pred ccccccc------CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCC----
Confidence 2222111 234588999999999888887 889999999987 54432 2333323467889999998
Q ss_pred ceE-EEee---eEEEEeCCC--CeE--EEEec----CC--cceE--EEEec-cceEE-eeccCCceeeeEeeecCCeEEE
Q 001202 367 EPL-MSGT---SMMQWDEYG--YRL--YAIEE----GS--SERV--LIFSF-GKCCL-NRGVSGMTYARQVIYGEDRLLV 428 (1124)
Q Consensus 367 ~~l-~sg~---~i~~W~~~~--~~l--~~~~~----~~--~~~v--~~~s~-~k~~~-s~s~d~~v~~w~l~~~~~~l~l 428 (1124)
+.+ +++. .+.+|+... +++ ..... ++ ...+ +++++ ++.++ +...++.+.+|++........
T Consensus 190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~- 268 (343)
T 1ri6_A 190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS- 268 (343)
T ss_dssp SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE-
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceE-
Confidence 544 3332 889999843 432 22211 11 1122 56666 66555 566788999999763211100
Q ss_pred eecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEc-CCCeE-EEE--cCCCcEEE
Q 001202 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYD--IRQKKWRV 487 (1124)
Q Consensus 429 ~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag-~dG~v-lwd--~~sg~wk~ 487 (1124)
....+..+.. +..++|+|||+++++++ .++.+ +|+ ..+++++.
T Consensus 269 ---------------~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 315 (343)
T 1ri6_A 269 ---------------KEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHE 315 (343)
T ss_dssp ---------------EEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEE
T ss_pred ---------------EeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeE
Confidence 0111222223 77899999999999888 57888 994 45776654
No 144
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.61 E-value=7.2e-14 Score=171.77 Aligned_cols=186 Identities=11% Similarity=-0.015 Sum_probs=122.2
Q ss_pred EEecCCcE-EEEEecCCceEeeecccccee--cCCCCeEEEEEccCCCEEEEEecC----CeEEEEEcCCCCceeEEEee
Q 001202 225 VLYSNGQL-MSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRR----GVVELYDLAESASLIRTVSL 297 (1124)
Q Consensus 225 ~~s~dG~~-~~~~~~d~~i~~wd~~~~~~~--~gh~~~v~va~spdg~lLAsGs~D----gtV~vwd~~~~~~~~~~l~~ 297 (1124)
++++||+. +++...+....+||..+++.. ..+.. .+++|||||++||+++.| ++|.+||+++ ++.. .+.
T Consensus 116 ~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-g~~~-~l~- 191 (582)
T 3o4h_A 116 SGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-GGLR-VFD- 191 (582)
T ss_dssp EEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-CCCE-EEC-
T ss_pred eeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-CCce-Eee-
Confidence 45577752 333344445558988766532 22222 578999999999998887 7899999876 5433 444
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCEEEEEECCC--cEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeE
Q 001202 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSM 375 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg--~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i 375 (1124)
+ |.+.+..++|||||+.|+++..++ .|.+||+.++... .+.+| ...+.+++ . .+...
T Consensus 192 ---~----~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~-~~~~~~~~----~--------~~~~~ 250 (582)
T 3o4h_A 192 ---S----GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP-SKDFSSYR----P--------TAITW 250 (582)
T ss_dssp ---C----SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS-CSHHHHHC----C--------SEEEE
T ss_pred ---c----CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC-CcChhhhh----h--------ccccc
Confidence 3 788899999999999999888888 8999999998876 55554 33333332 0 00012
Q ss_pred EEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCce
Q 001202 376 MQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (1124)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I 455 (1124)
..|++++ ++ +++++.++++++|.+ +.. .. .....|
T Consensus 251 ~~~spdg-~~-------------------~~~~~~~g~~~l~~~--g~~--------------------~~---~~~~~v 285 (582)
T 3o4h_A 251 LGYLPDG-RL-------------------AVVARREGRSAVFID--GER--------------------VE---APQGNH 285 (582)
T ss_dssp EEECTTS-CE-------------------EEEEEETTEEEEEET--TEE--------------------EC---CCSSEE
T ss_pred eeEcCCC-cE-------------------EEEEEcCCcEEEEEE--CCe--------------------ec---cCCCce
Confidence 2244433 22 234555677778876 221 00 122457
Q ss_pred EEEEEccCCCEEEEEcCCCeE--EEEcC
Q 001202 456 QHVAASKDGMFLAVAGLHGLI--LYDIR 481 (1124)
Q Consensus 456 ~~va~SpdG~~lAvag~dG~v--lwd~~ 481 (1124)
.+++|| ||+.+++++.+... +|...
T Consensus 286 ~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 286 GRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred EEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 889999 99999999888764 55544
No 145
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.60 E-value=2.7e-14 Score=169.28 Aligned_cols=208 Identities=13% Similarity=0.142 Sum_probs=137.1
Q ss_pred CeE-EEEEccCCCEEEEEecCCeEEEEEcCCC-------C--ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEE----
Q 001202 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAES-------A--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA---- 323 (1124)
Q Consensus 258 ~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~-------~--~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~La---- 323 (1124)
..+ ++++++++.++++|+.|| +++|+.... . ........ .....|.+.|.+++|+|||++||
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~l~~spdg~~lav~~~ 112 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQ---GLLVPMKFPIHHLALSCDNLTLSACMM 112 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCC---CEEECCSSCEEEEEECTTSCEEEEEEE
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCc---cccccCCCcccEEEEcCCCCEEEEEEe
Confidence 345 899999999999999988 899875320 0 00110000 00012677899999999999999
Q ss_pred EEECCCcEEEEEcCCC--------ee---eEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCC
Q 001202 324 VGWKSRGLTVWSVSGC--------RL---MSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGS 392 (1124)
Q Consensus 324 sgs~Dg~I~vWdv~~~--------~l---~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~ 392 (1124)
+|+.|++|+|||+.++ +. +..+.+| ...|.+++|+|++
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~------------------------------ 161 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDA-GGMVIDMKWNPTV------------------------------ 161 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSG-GGSEEEEEECSSC------------------------------
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCC-CCceEEEEECCCC------------------------------
Confidence 7888999999998654 11 2333334 3445555555542
Q ss_pred cceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcC
Q 001202 393 SERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (1124)
Q Consensus 393 ~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~ 472 (1124)
++.+++++.|+++++|++..+.. .....+|...|.+++|||+|++||+|+.
T Consensus 162 ---------~~~las~s~Dg~v~iwD~~~~~~--------------------~~~~~~~~~~v~~v~wspdg~~lasgs~ 212 (434)
T 2oit_A 162 ---------PSMVAVCLADGSIAVLQVTETVK--------------------VCATLPSTVAVTSVCWSPKGKQLAVGKQ 212 (434)
T ss_dssp ---------TTEEEEEETTSCEEEEEESSSEE--------------------EEEEECGGGCEEEEEECTTSSCEEEEET
T ss_pred ---------CCEEEEEECCCeEEEEEcCCCcc--------------------eeeccCCCCceeEEEEcCCCCEEEEEcC
Confidence 23456777888889998765422 2234457788999999999999999999
Q ss_pred CCeE-EEEcCCCcEEEecCcC---ceeeeEEEEEEecCCEEEEEEEecCC----CeEEEEEeeCC
Q 001202 473 HGLI-LYDIRQKKWRVFGDIT---QEQKIQSKGLLWLGKIIVVCNYIDSS----NTYELLFYPRY 529 (1124)
Q Consensus 473 dG~v-lwd~~sg~wk~f~~~~---~e~~~~v~gl~W~~~~liv~~~~~~~----~~~elrly~~~ 529 (1124)
||.+ +||.+....+.+.... .++...+.++.|.++..+++.+...+ ....+++|...
T Consensus 213 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 213 NGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp TSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred CCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence 9999 9999833233332211 12235688999987655554443322 23458888775
No 146
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.60 E-value=4.6e-14 Score=178.03 Aligned_cols=258 Identities=9% Similarity=0.029 Sum_probs=144.2
Q ss_pred eEEEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeC---------CCeEEE
Q 001202 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS---------SLYLHI 93 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~---------dg~l~i 93 (1124)
+-+.|||||+++++..+++|.+|+.. .+...... . ..... ...+..++|||||++||+++. ++.|++
T Consensus 19 ~~~~~s~dg~~~~~~~d~~i~~~~~~-~g~~~~~~-~-~~~~~-~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 19 FFPNWISGQEYLHQSADNNIVLYNIE-TGQSYTIL-S-NRTMK-SVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCCEESSSSEEEEECTTSCEEEEESS-SCCEEEEE-C-HHHHH-TTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred CccEECCCCeEEEEcCCCCEEEEEcC-CCcEEEEE-c-ccccc-ccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 44689999988888778899999996 44432221 1 11111 123678999999999999886 689999
Q ss_pred EEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCC
Q 001202 94 FKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSS 173 (1124)
Q Consensus 94 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~ 173 (1124)
||+.++... ... .+. ....-.++++|++.++.+. ++.|++ |+........+...
T Consensus 95 ~d~~~g~~~-~~~--------------------~l~-~~~~~~~~SPDG~~la~~~-~~~i~~--~~~~~g~~~~l~~~- 148 (719)
T 1z68_A 95 YDLSNGEFV-RGN--------------------ELP-RPIQYLCWSPVGSKLAYVY-QNNIYL--KQRPGDPPFQITFN- 148 (719)
T ss_dssp EETTTTEEC-CSS--------------------CCC-SSBCCEEECSSTTCEEEEE-TTEEEE--ESSTTSCCEECCCC-
T ss_pred EECCCCccc-cce--------------------ecC-cccccceECCCCCEEEEEE-CCeEEE--EeCCCCCcEEEecC-
Confidence 998754320 000 000 0112246778888887764 677766 55433322211000
Q ss_pred CCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCC-------------
Q 001202 174 NDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK------------- 240 (1124)
Q Consensus 174 ~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~------------- 240 (1124)
...... +.++...|..-+. ......++++|||+.+++++.+.
T Consensus 149 ------------~~~~~v------------~~g~~~~v~~ee~-~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~ 203 (719)
T 1z68_A 149 ------------GRENKI------------FNGIPDWVYEEEM-LATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGD 203 (719)
T ss_dssp ------------CBTTTE------------EESSCCHHHHHHT-TCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCS
T ss_pred ------------CCcCCe------------Ecccccceeeeec-ccCcccEEECCCCCEEEEEEECCCCCceEEeeccCC
Confidence 000000 0000000000000 00002355667777777665431
Q ss_pred ---------------------ceEeeeccccce-----------ecCCCCeE-EEEEccCCCEEEEEecCC----eEEEE
Q 001202 241 ---------------------GLKLAEFIKIDK-----------ELGSGDAV-CASIAPEQQILAVGTRRG----VVELY 283 (1124)
Q Consensus 241 ---------------------~i~~wd~~~~~~-----------~~gh~~~v-~va~spdg~lLAsGs~Dg----tV~vw 283 (1124)
++.+||..+++. +.+|...+ +++||||++++++....+ .|.+|
T Consensus 204 ~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~ 283 (719)
T 1z68_A 204 EQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSIC 283 (719)
T ss_dssp SSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEE
T ss_pred CCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEE
Confidence 567888776542 12577777 999999988887754332 47788
Q ss_pred E----cCCCCceeEEEeeccCCCCCCCCCCeE-----EEEECCCCCEEEE--EECCC--cEEEEEcCCCe
Q 001202 284 D----LAESASLIRTVSLYDWGYSMDDTGPVS-----CIAWTPDNSAFAV--GWKSR--GLTVWSVSGCR 340 (1124)
Q Consensus 284 d----~~~~~~~~~~l~~~~~g~~~~h~g~V~-----~lawSPDG~~Las--gs~Dg--~I~vWdv~~~~ 340 (1124)
| +.+ ++....+.....+ |.+.|. +++|||||+.++. +..+| .|.+|++.++.
T Consensus 284 d~~~~~~~-g~~~~~~~~~~~~----~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 284 DFREDWQT-WDCPKTQEHIEES----RTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp EECSSSSS-EECCGGGEEEEEC----SSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred cccCCCCC-CceEEEEeccccc----CCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 8 654 4332211000013 666676 8899999996554 44555 46666776654
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.59 E-value=9.6e-13 Score=149.59 Aligned_cols=260 Identities=9% Similarity=0.034 Sum_probs=164.0
Q ss_pred EEEEeeCCeEEEEEc--------CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeC-CCeEEEE
Q 001202 24 IIYFKVNNGLLLIAS--------PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS-SLYLHIF 94 (1124)
Q Consensus 24 iv~fS~dg~llA~~~--------~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~-dg~l~i~ 94 (1124)
-++|||||+++++++ +++|.+||.. .+..+..... .+....++|+|||+.++++.. ++.|.+|
T Consensus 45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~-~~~~~~~~~~-------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPV-TLEVTQAIHN-------DLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EEEEETTTTEEEEEECCCTTTEESEEEEEECTT-TCCEEEEEEE-------SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC-CCeEEEEEec-------CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 377999998766655 4579999995 5544443321 233468999999997766655 6899999
Q ss_pred EeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEe--cCCcEEEEeccCccccceeeccC
Q 001202 95 KVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL--SDGSLYSISWKGEFYGAFELVHS 172 (1124)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t--~dg~v~~~~Wd~~~~~~~~l~~~ 172 (1124)
|+.++........+... .+....+. ...-.++.++++.++++. .++.+.+ |+........
T Consensus 117 d~~~~~~~~~~~~~~~~---------~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~~i~~--~d~~~~~~~~---- 178 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRK---------RTEEVRPL---QPRELVADDATNTVYISGIGKESVIWV--VDGGNIKLKT---- 178 (353)
T ss_dssp ETTTCCEEEEEESCCCC---------CCSSCCCC---EEEEEEEETTTTEEEEEEESSSCEEEE--EETTTTEEEE----
T ss_pred eCCCCeeEEEEecCCCc---------cccccCCC---CCceEEECCCCCEEEEEecCCCceEEE--EcCCCCceEE----
Confidence 98765421111110000 00000000 011234556778788776 3666766 4443221110
Q ss_pred CCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce
Q 001202 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK 252 (1124)
Q Consensus 173 ~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~ 252 (1124)
. .......+ ..+++++||+.++++..++.+.+||..+++.
T Consensus 179 --------~----------------------~~~~~~~~----------~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~ 218 (353)
T 3vgz_A 179 --------A----------------------IQNTGKMS----------TGLALDSEGKRLYTTNADGELITIDTADNKI 218 (353)
T ss_dssp --------E----------------------ECCCCTTC----------CCCEEETTTTEEEEECTTSEEEEEETTTTEE
T ss_pred --------E----------------------ecCCCCcc----------ceEEECCCCCEEEEEcCCCeEEEEECCCCeE
Confidence 0 00001111 2345668888888877788888898876654
Q ss_pred e----c---CCCCeE-EEEEccCCCEEEEEec-CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEE
Q 001202 253 E----L---GSGDAV-CASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA 323 (1124)
Q Consensus 253 ~----~---gh~~~v-~va~spdg~lLAsGs~-DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~La 323 (1124)
. . ++.... +++|+|+++.+++++. ++.|.+||..+ ++.+..+.. + + ..+++|+|||+.++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~---~----~---~~~~~~s~dg~~l~ 287 (353)
T 3vgz_A 219 LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN-GNILAKVAA---P----E---SLAVLFNPARNEAY 287 (353)
T ss_dssp EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT-CCEEEEEEC---S----S---CCCEEEETTTTEEE
T ss_pred EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEc---C----C---CceEEECCCCCEEE
Confidence 3 1 344555 8999999997776665 49999999987 776666652 1 1 25699999999666
Q ss_pred EEE-CCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 324 VGW-KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 324 sgs-~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
++. .++.|.+||..+++.+..+... ..+.+++|+|++
T Consensus 288 v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg 325 (353)
T 3vgz_A 288 VTHRQAGKVSVIDAKSYKVVKTFDTP--THPNSLALSADG 325 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECC--SEEEEEEECTTS
T ss_pred EEECCCCeEEEEECCCCeEEEEEecC--CCCCeEEEcCCC
Confidence 555 6899999999999888877653 356777788776
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.59 E-value=1.1e-13 Score=151.98 Aligned_cols=224 Identities=13% Similarity=0.077 Sum_probs=151.5
Q ss_pred cCCcceEEEEecCCcEEEEEecCCceEeeeccc-ccee---cCC-CCeE-EEEEccCCCEEEEEe--cCCeEEEEEcCCC
Q 001202 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK-IDKE---LGS-GDAV-CASIAPEQQILAVGT--RRGVVELYDLAES 288 (1124)
Q Consensus 217 s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~-~~~~---~gh-~~~v-~va~spdg~lLAsGs--~DgtV~vwd~~~~ 288 (1124)
.+.....++++|||+.++++. ++.+.+|+..+ ++.. .+| ...+ +++|+|++++|++++ .++.++||.++..
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~ 118 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPST 118 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETT
T ss_pred CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECC
Confidence 344456677889999888875 67899999877 5432 344 3566 899999999999999 4466777776542
Q ss_pred CceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEE-EEECCCcEEEEEc--CCCeeeEEeccCCcCceeeeEEcCCCCCC
Q 001202 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKSRGLTVWSV--SGCRLMSTIRQISLSSISSPIVKPNQDCK 365 (1124)
Q Consensus 289 ~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~La-sgs~Dg~I~vWdv--~~~~l~~tl~~h~~~~V~s~~~sp~~~~~ 365 (1124)
+.....+. +...+.+++|+|||+.|+ +++.|+.++||++ .++. ...+..+ ...+.+++|+|++
T Consensus 119 ~~~~~~~~---------~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~s~dg--- 184 (297)
T 2ojh_A 119 GGTPRLMT---------KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHG-EGRNDGPDYSPDG--- 184 (297)
T ss_dssp CCCCEECC---------SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCS-SSCEEEEEECTTS---
T ss_pred CCceEEee---------cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccC-CCccccceECCCC---
Confidence 33333333 334589999999999887 7888999999996 3443 3455554 5678999999998
Q ss_pred cceEEEee----eEEEEeCC-CCeEEEEecCCcceE--EEEec-cceEEeeccC-----------CceeeeEeeecCCeE
Q 001202 366 YEPLMSGT----SMMQWDEY-GYRLYAIEEGSSERV--LIFSF-GKCCLNRGVS-----------GMTYARQVIYGEDRL 426 (1124)
Q Consensus 366 ~~~l~sg~----~i~~W~~~-~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d-----------~~v~~w~l~~~~~~l 426 (1124)
+.++.+. ...+|... .+........+...+ ..+++ ++.++.++.+ +.+.+|++..+....
T Consensus 185 -~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 263 (297)
T 2ojh_A 185 -RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET 263 (297)
T ss_dssp -SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE
T ss_pred -CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee
Confidence 6554322 56777654 233344445555555 45555 7777766655 346666654433210
Q ss_pred EEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCC
Q 001202 427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (1124)
Q Consensus 427 ~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG 474 (1124)
...+.+|...+.+++|+|||++|++++.+.
T Consensus 264 ------------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 264 ------------------LFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ------------------EEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ------------------eeccCCCCcccccceECCCCCEEEEEEecc
Confidence 122336777888999999999999887653
No 149
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.58 E-value=5.9e-14 Score=176.89 Aligned_cols=237 Identities=15% Similarity=0.041 Sum_probs=152.4
Q ss_pred EEEEecCCcEEEEEecC---------CceEeeeccccce--e---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCC
Q 001202 223 LFVLYSNGQLMSCSVSK---------KGLKLAEFIKIDK--E---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE 287 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d---------~~i~~wd~~~~~~--~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~ 287 (1124)
.++++|||+.++++..+ +.+.+||..+++. + .+|...+ +++|||||+.||+++. ++|++|++.+
T Consensus 65 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~ 143 (723)
T 1xfd_A 65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG 143 (723)
T ss_dssp EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS
T ss_pred eEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCC
Confidence 45666889888887764 5677999877653 2 2344456 8999999999999975 7999999987
Q ss_pred CCceeEEEeeccCCC-CCCC---------CCCeEEEEECCCCCEEEEEECCC----------------------------
Q 001202 288 SASLIRTVSLYDWGY-SMDD---------TGPVSCIAWTPDNSAFAVGWKSR---------------------------- 329 (1124)
Q Consensus 288 ~~~~~~~l~~~~~g~-~~~h---------~g~V~~lawSPDG~~Lasgs~Dg---------------------------- 329 (1124)
+...+.......+. ..++ .+.+.+++|||||+.||+++.|+
T Consensus 144 -g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 222 (723)
T 1xfd_A 144 -KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAG 222 (723)
T ss_dssp -SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTT
T ss_pred -CceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCC
Confidence 55444333100000 0000 11348899999999999988653
Q ss_pred ------cEEEEEcCCCeeeEEeccC-----CcCceeeeEEcCCCCCCcceEEEe-------eeEEEEeCCCCeEEEEecC
Q 001202 330 ------GLTVWSVSGCRLMSTIRQI-----SLSSISSPIVKPNQDCKYEPLMSG-------TSMMQWDEYGYRLYAIEEG 391 (1124)
Q Consensus 330 ------~I~vWdv~~~~l~~tl~~h-----~~~~V~s~~~sp~~~~~~~~l~sg-------~~i~~W~~~~~~l~~~~~~ 391 (1124)
.|.+||+.++.....+..+ +...+.+++|+||+ +.++.. ..+.+|+..++++......
T Consensus 223 ~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg----~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~ 298 (723)
T 1xfd_A 223 SENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST----KVAVTWLNRAQNVSILTLCDATTGVCTKKHED 298 (723)
T ss_dssp SCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS----EEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred CCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC----eEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe
Confidence 7999999988765666543 14578899999998 666443 2678899998886654322
Q ss_pred -Ccce------EEEEec-cceEEe--eccCC----ceeeeEee--ecCCeEEEeecCCCccceeeecccceeeccCCCce
Q 001202 392 -SSER------VLIFSF-GKCCLN--RGVSG----MTYARQVI--YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (1124)
Q Consensus 392 -~~~~------v~~~s~-~k~~~s--~s~d~----~v~~w~l~--~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I 455 (1124)
+... -..|++ ++.++. ...++ ..++|.+. .+... ..+..+..+.+.+
T Consensus 299 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-----------------~~~~~l~~~~~~~ 361 (723)
T 1xfd_A 299 ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN-----------------DNIQSITSGDWDV 361 (723)
T ss_dssp ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS-----------------CCCCBSCCSSSCE
T ss_pred ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc-----------------cceeEeecCCeEE
Confidence 1121 245666 665553 34455 33444332 21110 0012233344556
Q ss_pred EE-EEEccCCCEEEEEcCC---CeE-EEEcCC
Q 001202 456 QH-VAASKDGMFLAVAGLH---GLI-LYDIRQ 482 (1124)
Q Consensus 456 ~~-va~SpdG~~lAvag~d---G~v-lwd~~s 482 (1124)
.. ++|||||++|+.++.+ +.+ +|++..
T Consensus 362 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 362 TKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred EeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 55 6999999999866655 667 998864
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.58 E-value=2.9e-12 Score=146.10 Aligned_cols=283 Identities=10% Similarity=0.022 Sum_probs=158.1
Q ss_pred CcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeC---CCeEEEEEeeecCceeecCCCCCCCccee
Q 001202 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS---SLYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (1124)
Q Consensus 40 ~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~---dg~l~i~~v~~~~~~~~~~~~~~~~~~~~ 116 (1124)
..+.+|..+.....+..... ....+....++|||||+ |++++. ++.|.+|++..+..... .
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~----~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~-----------~ 79 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGL----LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL-----------N 79 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEE----EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE-----------E
T ss_pred CCEEEEEEcCCCCeEEEeee----eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe-----------e
Confidence 46888877521222221111 11234456799999999 666554 58999999964321100 0
Q ss_pred eEEEEeeeeeecccccceEEEEeecCCeEEEEe-cCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccC
Q 001202 117 KISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT 195 (1124)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t-~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~ 195 (1124)
. ....+....-.++.++++.++++. .++.+.+|..+.. +... .+..++.....
T Consensus 80 ~--------~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~--g~~~---------~~~~~~~~~~~------- 133 (347)
T 3hfq_A 80 T--------VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD--GALT---------LTDTVQHSGHG------- 133 (347)
T ss_dssp E--------EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT--SCEE---------EEEEEECCCCC-------
T ss_pred e--------eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC--CCee---------ecceeecCCCC-------
Confidence 0 000111122345677888888887 6788888665432 1110 00000000000
Q ss_pred CCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecc-cccee------cCCCCeE-EEEEccC
Q 001202 196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI-KIDKE------LGSGDAV-CASIAPE 267 (1124)
Q Consensus 196 ~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~-~~~~~------~gh~~~v-~va~spd 267 (1124)
+ ........+. .++++|||+++++...++.+.+|+.. +++.. ....... .++|+||
T Consensus 134 p------~~~~~~~~~~----------~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spd 197 (347)
T 3hfq_A 134 P------RPEQDGSHIH----------YTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPD 197 (347)
T ss_dssp S------STTCSSCCEE----------EEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTT
T ss_pred C------CccccCCCce----------EEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCC
Confidence 0 0001122343 35556888866666667788888876 33211 1122234 8999999
Q ss_pred CCEEEE-EecCCeEEEEEcCCC-Cce--eEEEeeccCCCCCCCCCCeEEEEECCCCCEE-EEEECCCcEEEEEcCC---C
Q 001202 268 QQILAV-GTRRGVVELYDLAES-ASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKSRGLTVWSVSG---C 339 (1124)
Q Consensus 268 g~lLAs-Gs~DgtV~vwd~~~~-~~~--~~~l~~~~~g~~~~h~g~V~~lawSPDG~~L-asgs~Dg~I~vWdv~~---~ 339 (1124)
|+++++ +..++.|.+|+++.. +.. ...+.....+ ......+..++|+|||++| +++..++.|.+|++.. .
T Consensus 198 g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~ 275 (347)
T 3hfq_A 198 GQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD--YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHL 275 (347)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT--CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCE
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC--CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcE
Confidence 996555 567899999998752 332 2222211000 0112458899999999987 5556689999999962 2
Q ss_pred eeeEEeccCCcCceeeeEEcCCCCCCcceEEEee----eEEEE--eCCCCeEEE
Q 001202 340 RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQW--DEYGYRLYA 387 (1124)
Q Consensus 340 ~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~----~i~~W--~~~~~~l~~ 387 (1124)
..+..+..+ ...+..++|+|++ +.+..+. .+.+| +.+++++..
T Consensus 276 ~~~~~~~~~-~~~~~~~~~spdg----~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 276 TLIQQISTE-GDFPRDFDLDPTE----AFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEEECS-SSCCCEEEECTTS----SEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEeEEEecC-CCCcCeEEECCCC----CEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 445555554 3457889999998 6554432 56677 555555543
No 151
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.56 E-value=2.6e-13 Score=152.93 Aligned_cols=221 Identities=14% Similarity=0.121 Sum_probs=151.0
Q ss_pred EEEEecCCcEE-EEEecCCceEeeecccccee----cCC----CCeE-EEEEccCCCEEEEEe------------cCCeE
Q 001202 223 LFVLYSNGQLM-SCSVSKKGLKLAEFIKIDKE----LGS----GDAV-CASIAPEQQILAVGT------------RRGVV 280 (1124)
Q Consensus 223 ~~~~s~dG~~~-~~~~~d~~i~~wd~~~~~~~----~gh----~~~v-~va~spdg~lLAsGs------------~DgtV 280 (1124)
.++++|||+.+ +++..++.+.+||..+++.. .++ ...+ +++|+|+|+.+++++ .++.|
T Consensus 38 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i 117 (337)
T 1pby_B 38 VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV 117 (337)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceE
Confidence 35566888655 44455778999998766543 122 1134 899999999998886 57999
Q ss_pred EEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcC
Q 001202 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (1124)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp 360 (1124)
.+||+.+ ++....+. ....+.+++|+|||++|+++ ++.|.+||+.+++....+..+.. .....++|
T Consensus 118 ~v~d~~~-~~~~~~~~---------~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~s~ 183 (337)
T 1pby_B 118 ALYDAET-LSRRKAFE---------APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW--EAETYAQP 183 (337)
T ss_dssp EEEETTT-TEEEEEEE---------CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT--TTTTBCCC
T ss_pred EEEECCC-CcEEEEEe---------CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc--CCCceeCC
Confidence 9999987 66666655 23457889999999988888 68999999999988877765421 12336777
Q ss_pred CCCCCcceEEEee---------------------------eEEEEeCCCCeEEEE-ecCCcceE--EEEec-cceEEeec
Q 001202 361 NQDCKYEPLMSGT---------------------------SMMQWDEYGYRLYAI-EEGSSERV--LIFSF-GKCCLNRG 409 (1124)
Q Consensus 361 ~~~~~~~~l~sg~---------------------------~i~~W~~~~~~l~~~-~~~~~~~v--~~~s~-~k~~~s~s 409 (1124)
++. .+.... .+.+|+..++++... ...+...+ +.+++ ++.++++
T Consensus 184 dg~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~- 258 (337)
T 1pby_B 184 DVL----AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA- 258 (337)
T ss_dssp BCC----CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-
T ss_pred Ccc----EEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-
Confidence 762 211100 357899988876421 12233334 55666 6666665
Q ss_pred cCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 410 ~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
++.+.+|++..+.. ...+. ....+.+++|+|||+++++++.++.+ +||+.+++
T Consensus 259 -~~~v~~~d~~~~~~--------------------~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 259 -YNVLESFDLEKNAS--------------------IKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp -ESEEEEEETTTTEE--------------------EEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred -CCeEEEEECCCCcC--------------------cceec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 67888888644322 11111 12346789999999999999999999 99998875
No 152
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.55 E-value=2.4e-12 Score=145.31 Aligned_cols=267 Identities=11% Similarity=0.078 Sum_probs=156.4
Q ss_pred EeeCC-eEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeC-CCeEEEEEeeecCc-e
Q 001202 27 FKVNN-GLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS-SLYLHIFKVQITEK-S 102 (1124)
Q Consensus 27 fS~dg-~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~-dg~l~i~~v~~~~~-~ 102 (1124)
|++++ .++++.. +++|.+||.. .+..+.... . ..... .++|+|||+.+++++. ++.|.+||+..+.. .
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~-~~~~~~~~~-~-----~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~ 76 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTD-TLEILNQIT-L-----GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKV 76 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETT-TCCEEEEEE-C-----CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEE
T ss_pred EcCCCCEEEEEecCCCeEEEEeCc-ccceeeeEE-c-----cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeE
Confidence 55654 4566654 5689999985 544433322 1 12233 8999999998777766 78999999875432 1
Q ss_pred eecCCCCCCCcceeeEEEEeeeeeecccccceE-EEEeecCCeEEEEecCC---cEEEEeccCccccceeeccCCCCccc
Q 001202 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV-SNIVSDNKHMLLGLSDG---SLYSISWKGEFYGAFELVHSSNDSSV 178 (1124)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~i~~d~~~llv~t~dg---~v~~~~Wd~~~~~~~~l~~~~~~~~~ 178 (1124)
... . ... ...- .++.++++.++++..++ .+.+| +........
T Consensus 77 ~~~---------------~------~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~--d~~~~~~~~---------- 122 (331)
T 3u4y_A 77 VAI---------------Q------EGQ-SSMADVDITPDDQFAVTVTGLNHPFNMQSY--SFLKNKFIS---------- 122 (331)
T ss_dssp EEE---------------E------ECS-SCCCCEEECTTSSEEEECCCSSSSCEEEEE--ETTTTEEEE----------
T ss_pred Eec---------------c------cCC-CCccceEECCCCCEEEEecCCCCcccEEEE--ECCCCCeEE----------
Confidence 000 0 000 1111 35667778787444442 67764 433221110
Q ss_pred cccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCc-EEEEEecCCc-eEeeeccccce----
Q 001202 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKG-LKLAEFIKIDK---- 252 (1124)
Q Consensus 179 i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~-~~~~~~~d~~-i~~wd~~~~~~---- 252 (1124)
. . ...... ..++++|||+ ++++...+.. +.+|+......
T Consensus 123 --~----------------------~-~~~~~~----------~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 123 --T----------------------I-PIPYDA----------VGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp --E----------------------E-ECCTTE----------EEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred --E----------------------E-ECCCCc----------cceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec
Confidence 0 0 001112 2455668887 4444455577 88887543111
Q ss_pred ---ecCCCCeE-EEEEccCCCEE-EEEecCCeEEEEEcCCCCce---eEEEeeccCCCCCCCCCCeEEEEECCCCCEEEE
Q 001202 253 ---ELGSGDAV-CASIAPEQQIL-AVGTRRGVVELYDLAESASL---IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (1124)
Q Consensus 253 ---~~gh~~~v-~va~spdg~lL-AsGs~DgtV~vwd~~~~~~~---~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Las 324 (1124)
...+.... +++|+|+|+.+ +++..+++|.+||+.+ ++. +..+. +...+..++|+|||+++++
T Consensus 168 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~-~~~~~~~~~~~---------~~~~~~~~~~spdg~~l~v 237 (331)
T 3u4y_A 168 GQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN-PENITLLNAVG---------TNNLPGTIVVSRDGSTVYV 237 (331)
T ss_dssp EEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS-TTSCEEEEEEE---------CSSCCCCEEECTTSSEEEE
T ss_pred CCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC-Ccccceeeecc---------CCCCCceEEECCCCCEEEE
Confidence 11223334 99999999965 4555689999999987 666 55555 3456788999999997766
Q ss_pred EE-CCCcEEEEEcCCCee--eEEeccC----C--cCceeeeEEcCCCCCCcceEE-Eee---eEEEEeCCCCe
Q 001202 325 GW-KSRGLTVWSVSGCRL--MSTIRQI----S--LSSISSPIVKPNQDCKYEPLM-SGT---SMMQWDEYGYR 384 (1124)
Q Consensus 325 gs-~Dg~I~vWdv~~~~l--~~tl~~h----~--~~~V~s~~~sp~~~~~~~~l~-sg~---~i~~W~~~~~~ 384 (1124)
+. .++.|.+||..++++ +.++..+ . ......++|+|++ +.+. ++. .+.+|+..+..
T Consensus 238 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg----~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 238 LTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTE----TKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp ECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTS----SEEEEEETTTTEEEEEETTSCE
T ss_pred EEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCC----CEEEEecCCCCcEEEEEecCCc
Confidence 65 468899999998876 4333321 0 0112346777777 4443 222 66677766543
No 153
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.55 E-value=3.9e-12 Score=144.55 Aligned_cols=219 Identities=8% Similarity=0.013 Sum_probs=154.7
Q ss_pred EEEEecCCcEE-EEEecCCceEeeecccccee----cCCCC---------eEEEEEccCCCEEEEEe--cCCeEEEEEcC
Q 001202 223 LFVLYSNGQLM-SCSVSKKGLKLAEFIKIDKE----LGSGD---------AVCASIAPEQQILAVGT--RRGVVELYDLA 286 (1124)
Q Consensus 223 ~~~~s~dG~~~-~~~~~d~~i~~wd~~~~~~~----~gh~~---------~v~va~spdg~lLAsGs--~DgtV~vwd~~ 286 (1124)
.+++++||+.+ ++...++.+.+||..+++.. .++.. ..+++|+|+++.+++++ .++.|.+||..
T Consensus 93 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 93 GATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp SEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT
T ss_pred eEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC
Confidence 35667898844 44455788999998776543 11111 23899999999877776 48899999998
Q ss_pred CCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccC---CcCceeeeEEcCCCC
Q 001202 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI---SLSSISSPIVKPNQD 363 (1124)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h---~~~~V~s~~~sp~~~ 363 (1124)
+ ++....+. . +...+.+++|+|||+.+++++.++.|.+||..+++....+... ....+.+++++|++
T Consensus 173 ~-~~~~~~~~----~----~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg- 242 (353)
T 3vgz_A 173 N-IKLKTAIQ----N----TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTAR- 242 (353)
T ss_dssp T-TEEEEEEC----C----CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTT-
T ss_pred C-CceEEEec----C----CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCC-
Confidence 7 66666554 1 3344788999999999999999999999999999888777641 13457789999998
Q ss_pred CCcceEEEe----eeEEEEeCCCCeEEEEecCCcceEEEEec-cce-EEeeccCCceeeeEeeecCCeEEEeecCCCccc
Q 001202 364 CKYEPLMSG----TSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKC-CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL 437 (1124)
Q Consensus 364 ~~~~~l~sg----~~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~-~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~ 437 (1124)
+.+..+ ..+.+|+..++++..........-..+++ ++. .++...++.+.+|+...+..
T Consensus 243 ---~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~------------- 306 (353)
T 3vgz_A 243 ---QRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV------------- 306 (353)
T ss_dssp ---TEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEE-------------
T ss_pred ---CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeE-------------
Confidence 544332 27889999988877665443333366777 664 44555688888888644332
Q ss_pred eeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCe
Q 001202 438 KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL 475 (1124)
Q Consensus 438 ~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~ 475 (1124)
...+. ....+.+++|+|||+++++++.++.
T Consensus 307 -------~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~ 336 (353)
T 3vgz_A 307 -------VKTFD-TPTHPNSLALSADGKTLYVSVKQKS 336 (353)
T ss_dssp -------EEEEE-CCSEEEEEEECTTSCEEEEEEECCC
T ss_pred -------EEEEe-cCCCCCeEEEcCCCCEEEEEEcccc
Confidence 11111 1235688999999999998887753
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.54 E-value=1.9e-11 Score=140.20 Aligned_cols=282 Identities=13% Similarity=0.121 Sum_probs=159.6
Q ss_pred CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCC----CeEEEEEeeecCceeecCCCCCCCcc
Q 001202 39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS----LYLHIFKVQITEKSIQIGGKQPSGLF 114 (1124)
Q Consensus 39 ~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d----g~l~i~~v~~~~~~~~~~~~~~~~~~ 114 (1124)
+..|.+|..+.....+...... +.+....++|||||++|++++.+ |.+.+|++......+.
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~-----~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~---------- 90 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDA-----EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH---------- 90 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEE-----ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE----------
T ss_pred CCCEEEEEEeCCCCCEEEeecc-----cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE----------
Confidence 3479999875211112111111 12334579999999999999885 7999999975311110
Q ss_pred eeeEEEEeeeeeecccccceEEEEeecCCeEEEEe-cCCcEEEEeccCccccceeeccCCCCccccccccccCCCCcccc
Q 001202 115 FIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASV 193 (1124)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t-~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~ 193 (1124)
.+ .. ..........++.+++.++++. .++.+.+|..+.. +... .+.......+..
T Consensus 91 --~~-----~~--~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~--g~~~---------~~~~~~~~~g~~---- 146 (361)
T 3scy_A 91 --LL-----NT--QKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQD--GALL---------PASDVIEFKGSG---- 146 (361)
T ss_dssp --EE-----EE--EECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTT--SCBC---------SCSEEEECCCCC----
T ss_pred --Ee-----eE--eccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCC--CcCc---------ccceeEEccCCC----
Confidence 00 00 0001112344445777777776 5778887655432 1110 000000000000
Q ss_pred cCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEE-ecCCceEeeeccccc---------------e-ecCC
Q 001202 194 DTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCS-VSKKGLKLAEFIKID---------------K-ELGS 256 (1124)
Q Consensus 194 ~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~-~~d~~i~~wd~~~~~---------------~-~~gh 256 (1124)
. .........+. .++++|||+.++++ ..++.+.+|+..... . ...+
T Consensus 147 --~-----~~~~~~~~~~~----------~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 209 (361)
T 3scy_A 147 --P-----DKERQTMPHLH----------CVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP 209 (361)
T ss_dssp --S-----CTTTCSSCCEE----------EEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT
T ss_pred --C-----CccccCCCcce----------EEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC
Confidence 0 00011122233 35666888855444 457788888654321 1 1223
Q ss_pred CCeE-EEEEccCCCEEEEEe-cCCeEEEEEcCCCCcee--EEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC--Cc
Q 001202 257 GDAV-CASIAPEQQILAVGT-RRGVVELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS--RG 330 (1124)
Q Consensus 257 ~~~v-~va~spdg~lLAsGs-~DgtV~vwd~~~~~~~~--~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D--g~ 330 (1124)
.... .++|+|||+++++++ .+++|.+|++++ +... ..+.. ...+.....+++|||||++|+++..+ +.
T Consensus 210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~-----~~~~~~~~~~i~~spdg~~l~v~~~~~~~~ 283 (361)
T 3scy_A 210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAA-----DTVNAQGSGDIHLSPDGKYLYASNRLKADG 283 (361)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEES-----CSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEec-----CCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence 3344 999999999887777 689999999985 5432 22221 11244557899999999998776654 89
Q ss_pred EEEEEcC--CCe--eeEEeccCCcCceeeeEEcCCCCCCcceEEEee----eEEE--EeCCCCeEEEE
Q 001202 331 LTVWSVS--GCR--LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQ--WDEYGYRLYAI 388 (1124)
Q Consensus 331 I~vWdv~--~~~--l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~----~i~~--W~~~~~~l~~~ 388 (1124)
|.+|++. ++. .+..+.. ...+.+++|+|++ +.+..+. .+.+ |+.+++++...
T Consensus 284 i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg----~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 284 VAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNG----KYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTS----CEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred EEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCC----CEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 9999995 444 3334433 2457789999998 6555433 5556 46566666544
No 155
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.52 E-value=2.6e-12 Score=162.78 Aligned_cols=249 Identities=9% Similarity=0.057 Sum_probs=141.3
Q ss_pred eeEEEEecCCcEEEEEeCCCeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceE--EEEeecCCeEEE
Q 001202 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLL 147 (1124)
Q Consensus 70 ~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~d~~~llv 147 (1124)
...+.|+|||++++++ +|.|++|++.++.......++.... ..... .++++|++.++.
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~Spdg~~l~~ 78 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDE------------------FGHSINDYSISPDGQFILL 78 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTT------------------CCSCCCEEEECTTSSEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhh------------------hcccccceEECCCCCEEEE
Confidence 4589999999998886 8999999998776433333322110 00111 356788888888
Q ss_pred EecCCcE-------EEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCc
Q 001202 148 GLSDGSL-------YSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM 220 (1124)
Q Consensus 148 ~t~dg~v-------~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~ 220 (1124)
++.+..+ .++.|+.+.+.... +..+...+..
T Consensus 79 ~~~~~~~~r~~~~~~~~~~d~~~~~~~~-----------------------------------l~~~~~~~~~------- 116 (740)
T 4a5s_A 79 EYNYVKQWRHSYTASYDIYDLNKRQLIT-----------------------------------EERIPNNTQW------- 116 (740)
T ss_dssp EEEEEECSSSCEEEEEEEEETTTTEECC-----------------------------------SSCCCTTEEE-------
T ss_pred EECCeeeEEEccceEEEEEECCCCcEEE-----------------------------------cccCCCccee-------
Confidence 8765332 22335544332111 1122233433
Q ss_pred ceEEEEecCCcEEEEEecCCceEeeecccccee----cCCCCeE------------------EEEEccCCCEEEEEecCC
Q 001202 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV------------------CASIAPEQQILAVGTRRG 278 (1124)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~----~gh~~~v------------------~va~spdg~lLAsGs~Dg 278 (1124)
.+++|||+.++.. .++++.+|+..+++.. .++.+.+ .++|||||+.||.++.|.
T Consensus 117 ---~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~ 192 (740)
T 4a5s_A 117 ---VTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND 192 (740)
T ss_dssp ---EEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred ---eEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcc
Confidence 3444677666655 3456777766544322 1222222 378899999888876443
Q ss_pred ------------------------------------eEEEEEcCC---CCc-eeEEEeeccCCCCCCCCCCeEEEEECCC
Q 001202 279 ------------------------------------VVELYDLAE---SAS-LIRTVSLYDWGYSMDDTGPVSCIAWTPD 318 (1124)
Q Consensus 279 ------------------------------------tV~vwd~~~---~~~-~~~~l~~~~~g~~~~h~g~V~~lawSPD 318 (1124)
+|.+||+++ ... ....+..... ..+|...+..++||||
T Consensus 193 ~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~wspd 270 (740)
T 4a5s_A 193 TEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS--MLIGDHYLCDVTWATQ 270 (740)
T ss_dssp TTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH--HHTSCEEEEEEEEEET
T ss_pred cCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc--CCCCCeEEEEEEEeCC
Confidence 355566653 210 1222221000 0026777999999999
Q ss_pred CCEEEEEEC----CCcEEEEEcCCCe----ee--EEe--ccCCcCcee-----eeEEcCCCCCCcceEE-Eee------e
Q 001202 319 NSAFAVGWK----SRGLTVWSVSGCR----LM--STI--RQISLSSIS-----SPIVKPNQDCKYEPLM-SGT------S 374 (1124)
Q Consensus 319 G~~Lasgs~----Dg~I~vWdv~~~~----l~--~tl--~~h~~~~V~-----s~~~sp~~~~~~~~l~-sg~------~ 374 (1124)
|+.++.... +..|.+||+.++. +. .++ .++ ...|. +++|+||+ +.++ ..+ .
T Consensus 271 g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~-~~~v~~~~~~~p~fspDG----~~l~~~~s~~~G~~~ 345 (740)
T 4a5s_A 271 ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST-TGWVGRFRPSEPHFTLDG----NSFYKIISNEEGYRH 345 (740)
T ss_dssp TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS-SSCSSSSSCCCCEECTTS----SEEEEEEECTTSCEE
T ss_pred CeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC-CceEccCcCCCceEcCCC----CEEEEEEEcCCCceE
Confidence 997666543 2369999998876 22 122 223 33443 78999998 5443 222 5
Q ss_pred EEEEeCCCCeEEEEecC
Q 001202 375 MMQWDEYGYRLYAIEEG 391 (1124)
Q Consensus 375 i~~W~~~~~~l~~~~~~ 391 (1124)
+..|+..+++......+
T Consensus 346 l~~~~~~~~~~~~lT~g 362 (740)
T 4a5s_A 346 ICYFQIDKKDCTFITKG 362 (740)
T ss_dssp EEEEETTCSSCEESCCS
T ss_pred EEEEECCCCceEecccC
Confidence 66788877765554444
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.52 E-value=1.9e-12 Score=145.82 Aligned_cols=270 Identities=12% Similarity=0.032 Sum_probs=165.8
Q ss_pred cEEEEEecCCceEeeecccccee----cCCC--CeEEEEEccCCCEE-EEEecCCeEEEEEcCCCCceeEEEeeccCCCC
Q 001202 231 QLMSCSVSKKGLKLAEFIKIDKE----LGSG--DAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (1124)
Q Consensus 231 ~~~~~~~~d~~i~~wd~~~~~~~----~gh~--~~v~va~spdg~lL-AsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~ 303 (1124)
++++++..++++.+||..+++.. .++. ...+++|+|+++.+ +++..++.|.+||+.+ ++.+..+.....+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~-- 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTPE-- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBTT--
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEEcCCcc--
Confidence 45677778888999998776543 2332 23389999999765 5566689999999987 6666666521100
Q ss_pred CCCCCCeEEEEECCCCCEEEEEE------------CCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEE
Q 001202 304 MDDTGPVSCIAWTPDNSAFAVGW------------KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (1124)
Q Consensus 304 ~~h~g~V~~lawSPDG~~Lasgs------------~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~s 371 (1124)
.|...+.+++|+|||+.++++. .++.|.+||+.+++....+... ..+.+++|+|++ +.+..
T Consensus 79 -~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~ 151 (337)
T 1pby_B 79 -ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDG----SKLYG 151 (337)
T ss_dssp -EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTS----SCEEE
T ss_pred -cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeEECCCC----CEEEE
Confidence 0122577899999999999886 5799999999999888777652 457888999998 54444
Q ss_pred -eeeEEEEeCCCCeEEEEecCCc-ceEEEEec-cceEEeec-cCCce-eeeEeeecCC----------eEEEeecCCCcc
Q 001202 372 -GTSMMQWDEYGYRLYAIEEGSS-ERVLIFSF-GKCCLNRG-VSGMT-YARQVIYGED----------RLLVVQSEDTDE 436 (1124)
Q Consensus 372 -g~~i~~W~~~~~~l~~~~~~~~-~~v~~~s~-~k~~~s~s-~d~~v-~~w~l~~~~~----------~l~l~~~~~~~~ 436 (1124)
+..+.+|+..++++......+. ..-..+++ ++.+...+ .++.+ ..+....... .+.++......
T Consensus 152 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~- 230 (337)
T 1pby_B 152 LGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE- 230 (337)
T ss_dssp ESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC-
T ss_pred eCCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC-
Confidence 3488999999988876554322 11123344 33332222 22211 0111110000 11111111000
Q ss_pred ceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEE-ecCcCceeeeEEEEEEec--CCEEEEE
Q 001202 437 LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV-FGDITQEQKIQSKGLLWL--GKIIVVC 512 (1124)
Q Consensus 437 ~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~-f~~~~~e~~~~v~gl~W~--~~~liv~ 512 (1124)
.. ...+..+...+.+++|+|||++++++ ++.+ +||+.+++... +... ..+.++.|. ++.++++
T Consensus 231 ----~~--~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~ 297 (337)
T 1pby_B 231 ----MA--MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-----HSYYSVNVSTDGSTVWLG 297 (337)
T ss_dssp ----EE--EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-----SCCCEEEECTTSCEEEEE
T ss_pred ----ce--EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-----CceeeEEECCCCCEEEEE
Confidence 00 11122344567889999999999998 6888 99998876432 2111 124467776 4466665
Q ss_pred EEecCCCeEEEEEeeCC
Q 001202 513 NYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 513 ~~~~~~~~~elrly~~~ 529 (1124)
+. ...|++|+..
T Consensus 298 ~~-----~~~i~v~d~~ 309 (337)
T 1pby_B 298 GA-----LGDLAAYDAE 309 (337)
T ss_dssp SB-----SSEEEEEETT
T ss_pred cC-----CCcEEEEECc
Confidence 22 3479999874
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.51 E-value=8.4e-13 Score=156.34 Aligned_cols=156 Identities=14% Similarity=0.142 Sum_probs=112.6
Q ss_pred CCCeE-EEEEccCCCEEE----EEecCCeEEEEEcCCC-------CceeEEEeeccCCCCCCCCCCeEEEEECCC-CCEE
Q 001202 256 SGDAV-CASIAPEQQILA----VGTRRGVVELYDLAES-------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAF 322 (1124)
Q Consensus 256 h~~~v-~va~spdg~lLA----sGs~DgtV~vwd~~~~-------~~~~~~l~~~~~g~~~~h~g~V~~lawSPD-G~~L 322 (1124)
|...+ +++|+|++++|| +|+.|++|+|||+.+. .+.+..+... .+|.+.|.+++|+|+ +..|
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~v~~~p~~~~~l 165 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL-----KDAGGMVIDMKWNPTVPSMV 165 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC-----CSGGGSEEEEEECSSCTTEE
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc-----CCCCCceEEEEECCCCCCEE
Confidence 45567 999999999999 7888999999998651 0222222211 138999999999998 8899
Q ss_pred EEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCC-------
Q 001202 323 AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS------- 392 (1124)
Q Consensus 323 asgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~------- 392 (1124)
|+|+.||+|++||+.++.......+| ...|.+++|+|++ ..+++|+ ++++|+.+ ++.......+
T Consensus 166 as~s~Dg~v~iwD~~~~~~~~~~~~~-~~~v~~v~wspdg----~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~ 239 (434)
T 2oit_A 166 AVCLADGSIAVLQVTETVKVCATLPS-TVAVTSVCWSPKG----KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDH 239 (434)
T ss_dssp EEEETTSCEEEEEESSSEEEEEEECG-GGCEEEEEECTTS----SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTS
T ss_pred EEEECCCeEEEEEcCCCcceeeccCC-CCceeEEEEcCCC----CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCC
Confidence 99999999999999988776666666 6789999999998 8888877 89999998 3444433322
Q ss_pred cceEEEEec---cceEE-eeccCC------ceeeeEeeec
Q 001202 393 SERVLIFSF---GKCCL-NRGVSG------MTYARQVIYG 422 (1124)
Q Consensus 393 ~~~v~~~s~---~k~~~-s~s~d~------~v~~w~l~~~ 422 (1124)
...+..+.+ ...++ ..+.+| .+++|++...
T Consensus 240 ~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 240 PVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 236655555 23332 233333 2667776543
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.50 E-value=6e-11 Score=135.96 Aligned_cols=109 Identities=10% Similarity=0.141 Sum_probs=71.1
Q ss_pred CCcEEEEEe-cCCceEeeecccccee---------cC--------CCCeE-EEEEccCCCEEEEEe-cCCeEEEEEcCCC
Q 001202 229 NGQLMSCSV-SKKGLKLAEFIKIDKE---------LG--------SGDAV-CASIAPEQQILAVGT-RRGVVELYDLAES 288 (1124)
Q Consensus 229 dG~~~~~~~-~d~~i~~wd~~~~~~~---------~g--------h~~~v-~va~spdg~lLAsGs-~DgtV~vwd~~~~ 288 (1124)
||+.++++. .++++.+|+....... .+ +...+ +++|+|+|+++++++ .++.|++|+++..
T Consensus 108 dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~ 187 (361)
T 3scy_A 108 NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN 187 (361)
T ss_dssp CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence 777665554 5678888886532211 11 12224 799999999665554 5899999999863
Q ss_pred Cc------eeEE--EeeccCCCCCCCCCCeEEEEECCCCCEEEEEE-CCCcEEEEEcCCCee
Q 001202 289 AS------LIRT--VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRL 341 (1124)
Q Consensus 289 ~~------~~~~--l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs-~Dg~I~vWdv~~~~l 341 (1124)
+. .... ....... +...+..++|+|||+++++++ .++.|.+|++.++.+
T Consensus 188 ~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~ 245 (361)
T 3scy_A 188 ANADNKEKFLTKGTPEAFKVA----PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML 245 (361)
T ss_dssp CCTTTCCCCEEEEEEEEEECC----TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred CCcccccceeecccccceecC----CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence 32 2111 0000111 344578999999999888877 589999999987654
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.48 E-value=1.8e-12 Score=146.90 Aligned_cols=157 Identities=12% Similarity=0.062 Sum_probs=112.1
Q ss_pred EEecCCcEEEEEecCCceEeeecccccee---cCCC--CeEEEEEccCCCEE-EEEecCCeEEEEEcCCCCceeEEEeec
Q 001202 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSG--DAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLY 298 (1124)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~--~~v~va~spdg~lL-AsGs~DgtV~vwd~~~~~~~~~~l~~~ 298 (1124)
++.+++++++++..++++.+||..+++.. ..+. ....++|+|+++.+ +++..+++|.+||+.+ ++....+...
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~~~~~~~~ 84 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANLS 84 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEESC
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcEEEEEEcc
Confidence 34578888999999999999998776543 2222 33489999999865 4556789999999987 6666555521
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEECC------------CcEEEEEcCCCe---eeEEeccCCcCceeeeEEcCCCC
Q 001202 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKS------------RGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQD 363 (1124)
Q Consensus 299 ~~g~~~~h~g~V~~lawSPDG~~Lasgs~D------------g~I~vWdv~~~~---l~~tl~~h~~~~V~s~~~sp~~~ 363 (1124)
..+ ..+...+.+++|+|||++|++++.+ +.|.+||+.+++ .+..+..+ ..+.+++|+|++
T Consensus 85 ~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg- 159 (349)
T 1jmx_B 85 SVP--GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP--RQVYLMRAADDG- 159 (349)
T ss_dssp CST--TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC--SSCCCEEECTTS-
T ss_pred ccc--ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC--CcccceeECCCC-
Confidence 000 0002237889999999999999865 899999998743 33344332 358888999998
Q ss_pred CCcceEEEeeeEEEEeCCCCeEEEEec
Q 001202 364 CKYEPLMSGTSMMQWDEYGYRLYAIEE 390 (1124)
Q Consensus 364 ~~~~~l~sg~~i~~W~~~~~~l~~~~~ 390 (1124)
+.++.+..+.+|+..++++.....
T Consensus 160 ---~l~~~~~~i~~~d~~~~~~~~~~~ 183 (349)
T 1jmx_B 160 ---SLYVAGPDIYKMDVKTGKYTVALP 183 (349)
T ss_dssp ---CEEEESSSEEEECTTTCCEEEEEC
T ss_pred ---cEEEccCcEEEEeCCCCceecccc
Confidence 655555588999998888766543
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.44 E-value=6.6e-12 Score=144.76 Aligned_cols=237 Identities=8% Similarity=0.045 Sum_probs=149.1
Q ss_pred EEEEecCCcEEEEEecCCceEeeecc-cccee--c---CCCCeEEEEEccCCCE--EEEEe-------------cCCeEE
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFI-KIDKE--L---GSGDAVCASIAPEQQI--LAVGT-------------RRGVVE 281 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~-~~~~~--~---gh~~~v~va~spdg~l--LAsGs-------------~DgtV~ 281 (1124)
.++++|||++++++..+ ++.+|+.. +++.. . .+....+++|+|+|+. ++++. .+|++.
T Consensus 44 ~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~ 122 (365)
T 1jof_A 44 WMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGN 122 (365)
T ss_dssp EEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEE
T ss_pred EEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEE
Confidence 56777999988777766 89999875 54332 1 1122337899999994 55553 689999
Q ss_pred EEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC-CCcEEEEEcC-CCeee--EEeccC-CcCceeee
Q 001202 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVS-GCRLM--STIRQI-SLSSISSP 356 (1124)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~-Dg~I~vWdv~-~~~l~--~tl~~h-~~~~V~s~ 356 (1124)
+|+++..++....+.....+ +...+.+++|||||++|+++.. ++.|.+|++. ++++. ..+... +...+..+
T Consensus 123 v~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~ 198 (365)
T 1jof_A 123 VFSVSETGKLEKNVQNYEYQ----ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV 198 (365)
T ss_dssp EEEECTTCCEEEEEEEEECC----TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred EEccCCCCcCcceEeeEEeC----CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEe
Confidence 99998535554444322111 4566899999999998888764 6799999998 66542 334311 13468889
Q ss_pred EEcCCCCCCcceEEEee----eEEEEeC--CCCeEEE----E--ec----CCcc------eE--EE-Eec-cceEEeecc
Q 001202 357 IVKPNQDCKYEPLMSGT----SMMQWDE--YGYRLYA----I--EE----GSSE------RV--LI-FSF-GKCCLNRGV 410 (1124)
Q Consensus 357 ~~sp~~~~~~~~l~sg~----~i~~W~~--~~~~l~~----~--~~----~~~~------~v--~~-~s~-~k~~~s~s~ 410 (1124)
+|+|++ +.+..+. ++.+|+. .++++.. . .. ++.. .+ .+ +++ ++.+.+++.
T Consensus 199 ~~spdg----~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 199 AMHPTG----NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EECTTS----SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred EECCCC----CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 999998 6554322 6677754 3555421 1 11 1121 24 45 667 777665543
Q ss_pred C-C-----ceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEcc---CCCEEEEEcCC-CeE-EEE
Q 001202 411 S-G-----MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK---DGMFLAVAGLH-GLI-LYD 479 (1124)
Q Consensus 411 d-~-----~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~Sp---dG~~lAvag~d-G~v-lwd 479 (1124)
+ . ++.+|++..... +.. +......+......++||| ||++|++++.+ +.+ +|+
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~-~~~---------------~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGS-IEK---------------QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSC-EEE---------------EEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred CCCCCCCCeEEEEEECCCCC-EEE---------------eeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence 3 2 788888752111 100 0000111222345689999 89999999875 888 999
Q ss_pred cCCCc
Q 001202 480 IRQKK 484 (1124)
Q Consensus 480 ~~sg~ 484 (1124)
+..+.
T Consensus 339 ~~~~~ 343 (365)
T 1jof_A 339 WKDEF 343 (365)
T ss_dssp EETTE
T ss_pred Echhh
Confidence 87763
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.44 E-value=2.6e-12 Score=161.92 Aligned_cols=230 Identities=10% Similarity=0.030 Sum_probs=147.4
Q ss_pred EEEEecCCcEEEEEec---------CCceEeeecccccee--cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCc
Q 001202 223 LFVLYSNGQLMSCSVS---------KKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESAS 290 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~---------d~~i~~wd~~~~~~~--~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~ 290 (1124)
.++++|||+.+++++. ++++.+||..+++.. ......+ +++|||||+.||++. |++|++|++.+ +.
T Consensus 64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~-g~ 141 (719)
T 1z68_A 64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPG-DP 141 (719)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTT-SC
T ss_pred eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCC-CC
Confidence 4566789998888775 678999998877651 1223456 899999999999985 88999999987 54
Q ss_pred eeEEEeeccCCCC----CCCC---------CCeEEEEECCCCCEEEEEECCC----------------------------
Q 001202 291 LIRTVSLYDWGYS----MDDT---------GPVSCIAWTPDNSAFAVGWKSR---------------------------- 329 (1124)
Q Consensus 291 ~~~~l~~~~~g~~----~~h~---------g~V~~lawSPDG~~Lasgs~Dg---------------------------- 329 (1124)
..+ +. ..|.. .+|. +...+++|||||+.||+++.|.
T Consensus 142 ~~~-l~--~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 142 PFQ-IT--FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp CEE-CC--CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred cEE-Ee--cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 432 21 11200 0121 1125899999999999988653
Q ss_pred ------cEEEEEcCCCeee--------EEeccCCcCceeeeEEcCCCCCCcceEEEee-------eEEEEe----CCCCe
Q 001202 330 ------GLTVWSVSGCRLM--------STIRQISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWD----EYGYR 384 (1124)
Q Consensus 330 ------~I~vWdv~~~~l~--------~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~-------~i~~W~----~~~~~ 384 (1124)
.|.+||+.++... ..+.+| ...+.+++|+||+ ..+++.. .+.+|+ ..+++
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~SpD~----~~~~~~~~~~~~~~~l~~~d~~~~~~~g~ 293 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS-DYYFSWLTWVTDE----RVCLQWLKRVQNVSVLSICDFREDWQTWD 293 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS-CEEEEEEEESSSS----EEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred CCCCeeEEEEEECCCCCccceeEccCCccCCCC-cceEEEeEEeCCC----eEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence 7889999987642 112234 5678999999997 6555422 477888 77766
Q ss_pred EEEEe----cCCcceE-------EEEec-cceEE--eeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeecc
Q 001202 385 LYAIE----EGSSERV-------LIFSF-GKCCL--NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (1124)
Q Consensus 385 l~~~~----~~~~~~v-------~~~s~-~k~~~--s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~ 450 (1124)
+.... .++...+ ..+++ ++.++ +...++..++|....... .+..+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~-------------------~~~~lt~ 354 (719)
T 1z68_A 294 CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE-------------------NAIQITS 354 (719)
T ss_dssp CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST-------------------TCEECSC
T ss_pred eEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC-------------------ceEeccc
Confidence 54433 2333322 34555 55433 344555444443321111 0233445
Q ss_pred CCCceEEEEEccCCCEEEEEcCC-----CeE-EEEcCC
Q 001202 451 QNWPVQHVAASKDGMFLAVAGLH-----GLI-LYDIRQ 482 (1124)
Q Consensus 451 ~~~~I~~va~SpdG~~lAvag~d-----G~v-lwd~~s 482 (1124)
+.+.+..+.++ ||+.++..+.+ +.. +|.+..
T Consensus 355 ~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 355 GKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp SSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred CceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 67778888888 88888777655 667 888754
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.43 E-value=1.6e-11 Score=139.12 Aligned_cols=277 Identities=12% Similarity=0.119 Sum_probs=153.7
Q ss_pred EEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEe-CCCeEEEEEeeecCcee
Q 001202 26 YFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQITEKSI 103 (1124)
Q Consensus 26 ~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t-~dg~l~i~~v~~~~~~~ 103 (1124)
++++++.++++.+ +++|.+||.. .+..+...... ..+....++|+|||+.++++. .++.|.+||+.++....
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~-----~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVA-SDTVYKSCVMP-----DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETT-TTEEEEEEECS-----SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cccCCCEEEEEeCCCCeEEEEECC-CCcEEEEEecC-----CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence 4688888888765 5789999995 55444433211 111356899999999776554 67899999986543211
Q ss_pred ecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecC------------CcEEEEeccCcc-ccceeec
Q 001202 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSD------------GSLYSISWKGEF-YGAFELV 170 (1124)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~d------------g~v~~~~Wd~~~-~~~~~l~ 170 (1124)
........+ . .+....-.++.++++.++++..+ +.+.+++.+... .......
T Consensus 80 ~~~~~~~~~-----------~----~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 144 (349)
T 1jmx_B 80 HANLSSVPG-----------E----VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF 144 (349)
T ss_dssp EEESCCSTT-----------E----EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE
T ss_pred EEEcccccc-----------c----ccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec
Confidence 111000000 0 00011223566778888888755 777765443211 1111100
Q ss_pred cCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCC------------------------cceEEEE
Q 001202 171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP------------------------MRLLFVL 226 (1124)
Q Consensus 171 ~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~------------------------~~~~~~~ 226 (1124)
..+ ..+..+.+++++.+...+. ... .........+..+..... ....+++
T Consensus 145 ~~~---~~~~~~~~s~dg~l~~~~~--~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (349)
T 1jmx_B 145 PMP---RQVYLMRAADDGSLYVAGP--DIY-KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 218 (349)
T ss_dssp ECC---SSCCCEEECTTSCEEEESS--SEE-EECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred cCC---CcccceeECCCCcEEEccC--cEE-EEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeee
Confidence 111 1233444566655322211 111 111112222222222110 1112333
Q ss_pred ecCCc-----------EEEEEecCCceEeeeccccceecCCCCeE-EEEEcc-CCCEEEEEecCCeEEEEEcCCCCceeE
Q 001202 227 YSNGQ-----------LMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIR 293 (1124)
Q Consensus 227 s~dG~-----------~~~~~~~d~~i~~wd~~~~~~~~gh~~~v-~va~sp-dg~lLAsGs~DgtV~vwd~~~~~~~~~ 293 (1124)
++|+. ++......+.++.++... +.... +++++| ++++++++ ++.|.+||+.+ ++.+.
T Consensus 219 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~-~~~~~ 289 (349)
T 1jmx_B 219 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ-RKLIK 289 (349)
T ss_dssp C-------CCCEEEEEEEEEETTTCCEEEEEEEE------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT-TEEEE
T ss_pred cCCCcCCccccccceeEEEEeccCCcEEeccccc------CCCcceeeEecCCCCCEEEEE--cCeEEEEECcc-CeEEE
Confidence 33321 111222334444443311 23344 889999 99999988 88999999987 77666
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEecc
Q 001202 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 294 ~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~ 347 (1124)
.+. ..+.+.+++|+|||+.|++++.++.|++||+.+++.+.++..
T Consensus 290 ~~~---------~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 290 AAN---------LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp EEE---------CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred EEc---------CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 665 233467999999999999988899999999999988877754
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.37 E-value=3.3e-11 Score=152.65 Aligned_cols=255 Identities=9% Similarity=0.095 Sum_probs=158.3
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC---------CcE
Q 001202 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---------RGL 331 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D---------g~I 331 (1124)
+++|+|||++++++ ||+|++|++.+ ++....+..... ..+......++|||||++|+.++.+ +.+
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEY-GNSSVFLENSTF---DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTT-CCEEEEECTTTT---TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCC-CceEEEEechhh---hhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 79999999999997 99999999988 665555551110 0122233558999999999999987 456
Q ss_pred EEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee--eEEEEeCCCCeEEEEec-CCcceE------------
Q 001202 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEE-GSSERV------------ 396 (1124)
Q Consensus 332 ~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l~~~~~-~~~~~v------------ 396 (1124)
.+||+.++++. .+..+ ...+..++||||+ +.++.+. .+.+|+..+++...... ++...+
T Consensus 95 ~~~d~~~~~~~-~l~~~-~~~~~~~~~SPdG----~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee 168 (740)
T 4a5s_A 95 DIYDLNKRQLI-TEERI-PNNTQWVTWSPVG----HKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168 (740)
T ss_dssp EEEETTTTEEC-CSSCC-CTTEEEEEECSST----TCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred EEEECCCCcEE-EcccC-CCcceeeEECCCC----CEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence 69999998854 35554 5679999999999 7776655 88899998877655432 222222
Q ss_pred -------EEEec-cceEEeeccCCc-eeeeEeeecCC-----------------------eEEEeecCC---Cccceeee
Q 001202 397 -------LIFSF-GKCCLNRGVSGM-TYARQVIYGED-----------------------RLLVVQSED---TDELKILH 441 (1124)
Q Consensus 397 -------~~~s~-~k~~~s~s~d~~-v~~w~l~~~~~-----------------------~l~l~~~~~---~~~~~w~~ 441 (1124)
..+++ ++.++..+.|.+ +..|.+..... .+.++.-.. ........
T Consensus 169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~ 248 (740)
T 4a5s_A 169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ 248 (740)
T ss_dssp TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEE
T ss_pred hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEE
Confidence 56788 888887776655 77776543221 112221111 00001111
Q ss_pred cccceeeccCCCceEEEEEccCCCEEEEEcCC----CeE-EEEcCCCc--EEE--ecC---cCceeeeE---EEEEEecC
Q 001202 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLH----GLI-LYDIRQKK--WRV--FGD---ITQEQKIQ---SKGLLWLG 506 (1124)
Q Consensus 442 ~~~p~~~~~~~~~I~~va~SpdG~~lAvag~d----G~v-lwd~~sg~--wk~--f~~---~~~e~~~~---v~gl~W~~ 506 (1124)
+..|..+.+|...+..++|||||+.++....+ ..+ +||+.+++ |.. ... ..++.-+. .....|.+
T Consensus 249 l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 249 ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT
T ss_pred ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC
Confidence 22222222477779999999999977765433 367 99999886 211 110 11111011 12456764
Q ss_pred C--EEE-EEEEecCCCeEEEEEeeCC
Q 001202 507 K--IIV-VCNYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 507 ~--~li-v~~~~~~~~~~elrly~~~ 529 (1124)
| .++ .. .+.++..+|.+|+.+
T Consensus 329 DG~~l~~~~--s~~~G~~~l~~~~~~ 352 (740)
T 4a5s_A 329 DGNSFYKII--SNEEGYRHICYFQID 352 (740)
T ss_dssp TSSEEEEEE--ECTTSCEEEEEEETT
T ss_pred CCCEEEEEE--EcCCCceEEEEEECC
Confidence 4 444 33 344667789999874
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.34 E-value=3.8e-11 Score=138.69 Aligned_cols=220 Identities=11% Similarity=0.080 Sum_probs=136.8
Q ss_pred EEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-E--EEEccCCCEEEEEe----------------------c
Q 001202 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-C--ASIAPEQQILAVGT----------------------R 276 (1124)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~--va~spdg~lLAsGs----------------------~ 276 (1124)
+++|||+.++....+..+.+|+..+++.. ..+...+ . ..++|++++++... .
T Consensus 87 ~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (388)
T 3pe7_A 87 FLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKP 166 (388)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCC
Confidence 46799999998888888999998876542 3344444 2 34599999988532 3
Q ss_pred CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECC-CCCEEEEEECC------CcEEEEEcCCCeeeEEeccCC
Q 001202 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS------RGLTVWSVSGCRLMSTIRQIS 349 (1124)
Q Consensus 277 DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~D------g~I~vWdv~~~~l~~tl~~h~ 349 (1124)
++.|.+||+.+ ++...... +.+.+..++||| ||+.||.+..+ ..|.+++..++.. ..+..+.
T Consensus 167 ~~~l~~~d~~~-g~~~~l~~---------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~ 235 (388)
T 3pe7_A 167 CCRLMRVDLKT-GESTVILQ---------ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHA 235 (388)
T ss_dssp CEEEEEEETTT-CCEEEEEE---------ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCC
T ss_pred cceEEEEECCC-CceEEeec---------CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCC
Confidence 46789999887 54333322 566789999999 99999887764 3678888877654 3343332
Q ss_pred c-CceeeeEEcCCCCCCcceEEEee--------eEEEEeCCCCeEEEE--ecCCcceE-----EEEec-cceEEee----
Q 001202 350 L-SSISSPIVKPNQDCKYEPLMSGT--------SMMQWDEYGYRLYAI--EEGSSERV-----LIFSF-GKCCLNR---- 408 (1124)
Q Consensus 350 ~-~~V~s~~~sp~~~~~~~~l~sg~--------~i~~W~~~~~~l~~~--~~~~~~~v-----~~~s~-~k~~~s~---- 408 (1124)
. ..+..++|+|++ +.++..+ .+.+|++.+++.... ..++.... ..+++ ++.++..
T Consensus 236 ~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 311 (388)
T 3pe7_A 236 EGESCTHEFWVPDG----SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD 311 (388)
T ss_dssp TTEEEEEEEECTTS----SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred CCcccccceECCCC----CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence 2 357889999998 5553322 288999988874332 22210000 13555 5544422
Q ss_pred -----ccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCC-----------ceEEEEEccCCCEEEEEc-
Q 001202 409 -----GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW-----------PVQHVAASKDGMFLAVAG- 471 (1124)
Q Consensus 409 -----s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~-----------~I~~va~SpdG~~lAvag- 471 (1124)
..+..+.+|++..+..+ .+..+.. .+.+++|||||++|+.++
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~---------------------~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 312 SGYKIENDPFLYVFNMKNGTQH---------------------RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD 370 (388)
T ss_dssp -----CCCCEEEEEETTTTEEE---------------------EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred cccccCCCCEEEEEeccCCceE---------------------EeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence 33445566654332221 1112222 467789999999988666
Q ss_pred CCCeE-EEEc
Q 001202 472 LHGLI-LYDI 480 (1124)
Q Consensus 472 ~dG~v-lwd~ 480 (1124)
.+|.. +|.+
T Consensus 371 ~~g~~~l~~~ 380 (388)
T 3pe7_A 371 VHGKPALYLA 380 (388)
T ss_dssp TTSSCEEEEE
T ss_pred CCCceeEEEE
Confidence 46666 6654
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.32 E-value=1.3e-10 Score=134.00 Aligned_cols=248 Identities=8% Similarity=-0.004 Sum_probs=140.5
Q ss_pred EEEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcE--EEEEe-------------CC
Q 001202 24 IIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKL--IAVVT-------------SS 88 (1124)
Q Consensus 24 iv~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~--Lav~t-------------~d 88 (1124)
-++|||||+++++++.+++.+|+....+... ..... ...|....++|+|||+. ++++. .+
T Consensus 44 ~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~-~~~~~----~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 44 WMTFDHERKNIYGAAMKKWSSFAVKSPTEIV-HEASH----PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp EEEECTTSSEEEEEEBTEEEEEEEEETTEEE-EEEEE----ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred EEEECCCCCEEEEEccceEEEEEECCCCCEE-EeeEe----ecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 4789999998877776699999984122221 11111 01233446899999995 44542 58
Q ss_pred CeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceE--EEEeecCCeEEEEe-cCCcEEEEeccCcccc
Q 001202 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGL-SDGSLYSISWKGEFYG 165 (1124)
Q Consensus 89 g~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~d~~~llv~t-~dg~v~~~~Wd~~~~~ 165 (1124)
|.+.+|++....+. ...+.. . .. .....+ .++.+|++.++++. .++.|.+++.+. ...
T Consensus 119 g~v~v~~~~~~g~~------------~~~~~~-~----~~-~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~-~g~ 179 (365)
T 1jof_A 119 GYGNVFSVSETGKL------------EKNVQN-Y----EY-QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLA-SGE 179 (365)
T ss_dssp CEEEEEEECTTCCE------------EEEEEE-E----EC-CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT-TSC
T ss_pred ceEEEEccCCCCcC------------cceEee-E----Ee-CCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECC-CCC
Confidence 89999998642110 000000 0 00 011123 34566777777665 356777766542 111
Q ss_pred ceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEe-cCCceEe
Q 001202 166 AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKL 244 (1124)
Q Consensus 166 ~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~-~d~~i~~ 244 (1124)
...+ .. .....++..+.. ++++|||+.++++. .++++.+
T Consensus 180 ~~~~----------~~--------------------~~~~~~g~~p~~----------~~~spdg~~l~v~~~~~~~v~v 219 (365)
T 1jof_A 180 VELV----------GS--------------------VDAPDPGDHPRW----------VAMHPTGNYLYALMEAGNRICE 219 (365)
T ss_dssp EEEE----------EE--------------------EECSSTTCCEEE----------EEECTTSSEEEEEETTTTEEEE
T ss_pred EEEe----------ee--------------------EecCCCCCCCCE----------eEECCCCCEEEEEECCCCeEEE
Confidence 1000 00 000011223444 44557787666554 3567777
Q ss_pred eecc--ccce------e-------cCCCC------eE-EEE-EccCCCEEEEEecCC------eEEEEEcCCCCceeEEE
Q 001202 245 AEFI--KIDK------E-------LGSGD------AV-CAS-IAPEQQILAVGTRRG------VVELYDLAESASLIRTV 295 (1124)
Q Consensus 245 wd~~--~~~~------~-------~gh~~------~v-~va-~spdg~lLAsGs~Dg------tV~vwd~~~~~~~~~~l 295 (1124)
|+.. +++. . .+|.. .+ .++ |+|||++|+++..++ +|++|+++..++.....
T Consensus 220 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~ 299 (365)
T 1jof_A 220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL 299 (365)
T ss_dssp EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEee
Confidence 7543 2221 1 12332 45 899 999999888776533 89999997425543321
Q ss_pred eeccCCCCCCCCCCeEEEEECC---CCCEEEEEECC-CcEEEEEcCCCe
Q 001202 296 SLYDWGYSMDDTGPVSCIAWTP---DNSAFAVGWKS-RGLTVWSVSGCR 340 (1124)
Q Consensus 296 ~~~~~g~~~~h~g~V~~lawSP---DG~~Lasgs~D-g~I~vWdv~~~~ 340 (1124)
.... . +...+..++|+| ||++|++++.+ ++|+||++.+..
T Consensus 300 ~~~~-~----~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 300 FLSP-T----PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEEE-C----SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred eeee-c----CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 1111 1 233456789999 89999999875 899999998763
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.31 E-value=2.5e-10 Score=131.64 Aligned_cols=273 Identities=11% Similarity=0.074 Sum_probs=150.3
Q ss_pred eEEEEeeCCeEEEEEc-----------CCcEEEEecCCCceeEEEEeeChHHHhhhc-ceeEEEEecCCcEEEEEeC--C
Q 001202 23 QIIYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVTS--S 88 (1124)
Q Consensus 23 ~iv~fS~dg~llA~~~-----------~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G-~~~~v~wSPDg~~Lav~t~--d 88 (1124)
+-++|||||+++.++. +++|.+||.. ....+....-..+.. ..| ....++|||||++|+++.. +
T Consensus 53 p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~-t~~~~~~i~~~~~~~-~~g~~p~~i~~spdg~~l~v~n~~~~ 130 (361)
T 2oiz_A 53 GHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD-KLTFEKEISLPPKRV-QGLNYDGLFRQTTDGKFIVLQNASPA 130 (361)
T ss_dssp EEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT-TCCEEEEEEECTTBC-CBCCCGGGEEECTTSSEEEEEEESSS
T ss_pred CceEECCCCCEEEEEEecccccccCCCCCEEEEEECc-CCcEEEEEEcCcccc-ccCCCcceEEECCCCCEEEEECCCCC
Confidence 3678999999877764 3579999985 555555443221110 112 2347999999999999874 5
Q ss_pred CeEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecC-CeEEEEecCCcEEEEeccCccccce
Q 001202 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAF 167 (1124)
Q Consensus 89 g~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~~llv~t~dg~v~~~~Wd~~~~~~~ 167 (1124)
+.|.+||+...+.... + +...+. ..+ .+.+++ ..++..+.||.+..+.++.......
T Consensus 131 ~~v~v~d~~~~~~~~~-------------~-------i~~~~~-~~v-~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~ 188 (361)
T 2oiz_A 131 TSIGIVDVAKGDYVED-------------V-------TAAAGC-WSV-IPQPNRPRSFMTICGDGGLLTINLGEDGKVAS 188 (361)
T ss_dssp EEEEEEETTTTEEEEE-------------E-------GGGTTE-EEE-EECTTSSSEEEEEETTSSEEEEEECTTSSEEE
T ss_pred CeEEEEECCCCcEEEE-------------E-------ecCCCc-cee-EEcCCCCeeEEEECCCCcEEEEEECCCCcEee
Confidence 8899999875421100 0 111110 001 123333 4556667788777665543211000
Q ss_pred eeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEe---
Q 001202 168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL--- 244 (1124)
Q Consensus 168 ~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~--- 244 (1124)
... . ..-+..+.. .+ .+..+++....+..+.+|++.+.......+.+
T Consensus 189 ~~~--------~-~~~~~~~~~--------------------~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~ 238 (361)
T 2oiz_A 189 QSR--------S-KQMFSVKDD--------------------PI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGP 238 (361)
T ss_dssp EEE--------C-CCCSCTTTS--------------------CB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEE
T ss_pred ecc--------c-cceEcCCCC--------------------ce-EEEecccCCEEEEEeCCCeEEEEEecCCCceeccc
Confidence 000 0 000000000 00 00001111122333344443333322222211
Q ss_pred eecccccee-cCC-CCeE-EEEEccCCCEEEEEec-----------CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCe
Q 001202 245 AEFIKIDKE-LGS-GDAV-CASIAPEQQILAVGTR-----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPV 310 (1124)
Q Consensus 245 wd~~~~~~~-~gh-~~~v-~va~spdg~lLAsGs~-----------DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V 310 (1124)
|+....... .+. .... -++++|+++.+.++.. +++|.+||+.+ .+.+.++. . +. +
T Consensus 239 ~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~----~----~~--p 307 (361)
T 2oiz_A 239 WSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIP----G----RD--A 307 (361)
T ss_dssp EESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEE----C----TT--C
T ss_pred ccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEe----c----CC--e
Confidence 211110000 000 0111 2789999887776654 34899999988 77787776 3 33 8
Q ss_pred EEEEECCCCCEEEEEECCCcEEEEEcCCC--eeeEEeccCCcCceeeeEEcCCC
Q 001202 311 SCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 311 ~~lawSPDG~~Lasgs~Dg~I~vWdv~~~--~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
.+++|+|||++|++++. ++|.|||..++ +.+.++...+ ..-..++++|+|
T Consensus 308 ~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G-~~P~~~~~~p~G 359 (361)
T 2oiz_A 308 LSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAA-EASLQVQFHPVG 359 (361)
T ss_dssp CEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSC-SSEEEEEECCCS
T ss_pred eEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCC-CCcEEEEecCCC
Confidence 99999999999999887 99999999999 9998885543 345678888886
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.26 E-value=2.3e-09 Score=133.41 Aligned_cols=114 Identities=13% Similarity=0.071 Sum_probs=79.8
Q ss_pred EEEEecCCcEEEEEecC----------CceEeeeccc------cce--ec-CCCCeE-EEEEccCCCEEEEEecCC----
Q 001202 223 LFVLYSNGQLMSCSVSK----------KGLKLAEFIK------IDK--EL-GSGDAV-CASIAPEQQILAVGTRRG---- 278 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d----------~~i~~wd~~~------~~~--~~-gh~~~v-~va~spdg~lLAsGs~Dg---- 278 (1124)
.++++|||+.+++.+.+ .++.+|+..+ ++. +. .+.+.+ .++|||||+.||+++.++
T Consensus 134 ~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~ 213 (662)
T 3azo_A 134 DPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMP 213 (662)
T ss_dssp EEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCT
T ss_pred CcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCC
Confidence 34556888888777655 4678888766 432 24 555667 899999999999888664
Q ss_pred ----eEEEEEcCCCCc--eeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCC--cEEEEEcCCCeeeE
Q 001202 279 ----VVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR--GLTVWSVSGCRLMS 343 (1124)
Q Consensus 279 ----tV~vwd~~~~~~--~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg--~I~vWdv~~~~l~~ 343 (1124)
+|.+|+++..+. ....+.. + |.+.+..++|||||+.++++..|+ .|.+|++.++....
T Consensus 214 ~~~~~i~~~d~~~~g~~~~~~~l~~---~----~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~ 279 (662)
T 3azo_A 214 WEGTELKTARVTEDGRFADTRTLLG---G----PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ 279 (662)
T ss_dssp TTCEEEEEEEECTTSCEEEEEEEEE---E----TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE
T ss_pred CCCcEEEEEEECCCCcccccEEeCC---C----CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee
Confidence 799999983241 2222320 2 577899999999999888888888 45555655665443
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.26 E-value=6.9e-10 Score=127.98 Aligned_cols=277 Identities=14% Similarity=0.023 Sum_probs=153.6
Q ss_pred EEEccCCCEEEEEec-CCe--EEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCC
Q 001202 262 ASIAPEQQILAVGTR-RGV--VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (1124)
Q Consensus 262 va~spdg~lLAsGs~-Dgt--V~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~ 338 (1124)
.+|||||+.||+++. +|. |.+||+++ ++...... + +...+..++|||||+.|+.++.++.+.+||+.+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-g~~~~lt~----~----~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~ 111 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT-QVATQLTE----G----RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLAT 111 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTT-CEEEECCC----S----SCBCSSSCEECTTSSEEEEEETTTEEEEEETTT
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCC-CceEEeee----C----CCCCccceEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 789999999999987 774 77777765 54433222 2 455555678999999999999999999999999
Q ss_pred CeeeEEeccCCcCceeeeE--EcCCCCCCcceEEE-------------------------eeeEEEEeCCCCeEEEEecC
Q 001202 339 CRLMSTIRQISLSSISSPI--VKPNQDCKYEPLMS-------------------------GTSMMQWDEYGYRLYAIEEG 391 (1124)
Q Consensus 339 ~~l~~tl~~h~~~~V~s~~--~sp~~~~~~~~l~s-------------------------g~~i~~W~~~~~~l~~~~~~ 391 (1124)
++.......+ ...+.... ++|++ ..++. ...+..|+..+++.......
T Consensus 112 g~~~~~~~~~-~~~~~~~~~~~~~dg----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 186 (388)
T 3pe7_A 112 LEENVVYQVP-AEWVGYGTWVANSDC----TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE 186 (388)
T ss_dssp CCEEEEEECC-TTEEEEEEEEECTTS----SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE
T ss_pred Ccceeeeech-hhcccccceeECCCC----CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC
Confidence 8766555443 23333332 46766 44431 13677888888776554432
Q ss_pred CcceE--EEEec--cceEEeeccCC----ceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCC--CceEEEEEc
Q 001202 392 SSERV--LIFSF--GKCCLNRGVSG----MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN--WPVQHVAAS 461 (1124)
Q Consensus 392 ~~~~v--~~~s~--~k~~~s~s~d~----~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~--~~I~~va~S 461 (1124)
...+ ..+++ ++.++..+.++ ...+|.+..... .+..+..+. ..+...+||
T Consensus 187 -~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-------------------~~~~l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 187 -NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-------------------NMRKVKTHAEGESCTHEFWV 246 (388)
T ss_dssp -SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-------------------CCEESCCCCTTEEEEEEEEC
T ss_pred -CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-------------------ceEEeeeCCCCcccccceEC
Confidence 2233 45665 45554443321 223333321111 012222233 357788999
Q ss_pred cCCCEEEEEcC-CC----eE-EEEcCCCcEEEecCcCceeeeEE--EEEEecC--CEEEEEEEec----CCCeEEEEEee
Q 001202 462 KDGMFLAVAGL-HG----LI-LYDIRQKKWRVFGDITQEQKIQS--KGLLWLG--KIIVVCNYID----SSNTYELLFYP 527 (1124)
Q Consensus 462 pdG~~lAvag~-dG----~v-lwd~~sg~wk~f~~~~~e~~~~v--~gl~W~~--~~liv~~~~~----~~~~~elrly~ 527 (1124)
|||+.|+..+. +| .+ +||+.+++.+............. .+..|.+ ..+++..... .....+|.+|+
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 99998876543 22 37 99999987654322111000000 1234543 3343322110 13344788887
Q ss_pred CCCCCCcceEEEeec-----------CCccEEEEeeCCEEEEEE-cCCeEEEEEEEEe
Q 001202 528 RYHLDQSSLLCRKSL-----------LAKPIVMDVYEDYILVTY-RPFDVHIFHVKLF 573 (1124)
Q Consensus 528 ~~~ld~~~~l~~~~l-----------~s~~l~l~~~~~~llv~~-~d~~i~l~~~~~~ 573 (1124)
.+.-.. ..+..... ....+..++.+..++..+ .++...||.+.+.
T Consensus 327 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 327 MKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp TTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred ccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 741100 11111111 112346677777777644 4678888888754
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.23 E-value=4.3e-10 Score=129.75 Aligned_cols=127 Identities=12% Similarity=-0.009 Sum_probs=76.3
Q ss_pred EEEEec-CCcEEEEEecC------CceEeeeccccc--eecCCC--CeE-EEEEccCCCEEEEEecC-----CeEEEEEc
Q 001202 223 LFVLYS-NGQLMSCSVSK------KGLKLAEFIKID--KELGSG--DAV-CASIAPEQQILAVGTRR-----GVVELYDL 285 (1124)
Q Consensus 223 ~~~~s~-dG~~~~~~~~d------~~i~~wd~~~~~--~~~gh~--~~v-~va~spdg~lLAsGs~D-----gtV~vwd~ 285 (1124)
.+.++| ||+.++....+ ..+.+++....+ .+..+. ..+ .++|+|+|+.|+.++.+ +.|.+||+
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (396)
T 3c5m_A 192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP 271 (396)
T ss_dssp EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence 445556 66655444432 245566654332 122322 245 78999999988877654 45999998
Q ss_pred CCCCceeEEEeeccCCCCCCCCCCeEEEEECC-CCCEEEEEE----------------CCCcEEEEEcCCCeeeEEeccC
Q 001202 286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGW----------------KSRGLTVWSVSGCRLMSTIRQI 348 (1124)
Q Consensus 286 ~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs----------------~Dg~I~vWdv~~~~l~~tl~~h 348 (1124)
.+ ++...... ..+ .. ++|+| ||+.+++++ .++.|.+||+.++... .+..+
T Consensus 272 ~~-g~~~~l~~---------~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~ 338 (396)
T 3c5m_A 272 ET-LENEEVMV---------MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKH 338 (396)
T ss_dssp TT-CCEEEEEE---------CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEEC
T ss_pred CC-CCeEEeee---------CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCC
Confidence 76 54332222 111 33 89999 999888765 3478999999887643 34333
Q ss_pred CcC----------ceeeeEEcCCC
Q 001202 349 SLS----------SISSPIVKPNQ 362 (1124)
Q Consensus 349 ~~~----------~V~s~~~sp~~ 362 (1124)
... .+.+++|+|++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~s~dg 362 (396)
T 3c5m_A 339 STSWDVLDGDRQITHPHPSFTPND 362 (396)
T ss_dssp CCCCCCBTTBSSTTCCCCEECTTS
T ss_pred CCccccccccccCCCCCceEccCC
Confidence 111 14556677766
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.18 E-value=4.4e-09 Score=119.29 Aligned_cols=235 Identities=11% Similarity=0.010 Sum_probs=149.6
Q ss_pred EEEEecCCcEEEEEecC------------------------CceEeeecccccee----cCCCCeE-EEEEccCCCEEEE
Q 001202 223 LFVLYSNGQLMSCSVSK------------------------KGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAV 273 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d------------------------~~i~~wd~~~~~~~----~gh~~~v-~va~spdg~lLAs 273 (1124)
.++++++|+++++...+ +++.+||..+++.. .++.... .++++|+|+++++
T Consensus 28 ~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~ 107 (329)
T 3fvz_A 28 GVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVT 107 (329)
T ss_dssp EEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEE
T ss_pred EEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEE
Confidence 34555777777776655 36788887655433 2333344 9999999999999
Q ss_pred EecCCeEEEEEcCCCCceeEEEeec-cCCCCCCCCCCeEEEEECC-CCCEEEEEE-CCCcEEEEEcCCCeeeEEeccCC-
Q 001202 274 GTRRGVVELYDLAESASLIRTVSLY-DWGYSMDDTGPVSCIAWTP-DNSAFAVGW-KSRGLTVWSVSGCRLMSTIRQIS- 349 (1124)
Q Consensus 274 Gs~DgtV~vwd~~~~~~~~~~l~~~-~~g~~~~h~g~V~~lawSP-DG~~Lasgs-~Dg~I~vWdv~~~~l~~tl~~h~- 349 (1124)
.+.++.|++|+.+.....+.++... ..|...++......|+++| +|..+++.+ .++.|++|+.. +..+.++...+
T Consensus 108 d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~ 186 (329)
T 3fvz_A 108 DVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQWGEESS 186 (329)
T ss_dssp ETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEEECEECC
T ss_pred ECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEeccCCC
Confidence 9999999999986421245544211 0111123555789999999 888888886 68999999954 45566664321
Q ss_pred --------cCceeeeEEcCC-CCCCcceEEEee---eEEEEeCCCCeEEEEec--CCcceEE--EEeccceEEe------
Q 001202 350 --------LSSISSPIVKPN-QDCKYEPLMSGT---SMMQWDEYGYRLYAIEE--GSSERVL--IFSFGKCCLN------ 407 (1124)
Q Consensus 350 --------~~~V~s~~~sp~-~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~--~~~~~v~--~~s~~k~~~s------ 407 (1124)
......++++|+ + ..+++.. .+..|+.++++++.... ++...+. .++++..+.+
T Consensus 187 ~~~~~~~~~~~p~gia~d~~~g----~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v 262 (329)
T 3fvz_A 187 GSSPRPGQFSVPHSLALVPHLD----QLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYF 262 (329)
T ss_dssp SSSCCTTEESCEEEEEEETTTT----EEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCT
T ss_pred CCCCCCcccCCCcEEEEECCCC----EEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEe
Confidence 234788999998 5 5656543 88999998777766653 2233343 3333222222
Q ss_pred -eccCCceeeeEeeecCCeEEEeecCCCccceeeecccceee---ccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC
Q 001202 408 -RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY---ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 408 -~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~---~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s 482 (1124)
...+.++.+|+...+.. ...+ .++......++++|||..+++...++.| .|++..
T Consensus 263 ~~~~~~~v~~~~~~~g~~--------------------~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 263 GDQEPVQGFVMNFSSGEI--------------------IDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TCSCCCCEEEEETTTCCE--------------------EEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred ccCCCcEEEEEEcCCCeE--------------------EEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 22233455555433321 1111 2344457899999999888888888888 998753
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.14 E-value=2e-08 Score=110.82 Aligned_cols=224 Identities=11% Similarity=0.072 Sum_probs=144.0
Q ss_pred EEEEecCCcEEEEEecCCceEeeeccccce--e------cCCCCeE-EEEE-ccCCCEEEEEec-CCeEEEEEcCCCCce
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--E------LGSGDAV-CASI-APEQQILAVGTR-RGVVELYDLAESASL 291 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~--~------~gh~~~v-~va~-spdg~lLAsGs~-DgtV~vwd~~~~~~~ 291 (1124)
.++++++|+++++...++.+..|+...... + .+|.... ++++ .+++.+++++.. ++.|.+|+. + ++.
T Consensus 34 ~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~-g~~ 111 (286)
T 1q7f_A 34 GVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y-GQF 111 (286)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T-SCE
T ss_pred eEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-C-CcE
Confidence 455568888888777778888887542211 1 1233345 8999 578887777754 899999993 3 555
Q ss_pred eEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEecc-CCcCceeeeEEcCCCCCCcceEE
Q 001202 292 IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLM 370 (1124)
Q Consensus 292 ~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~-h~~~~V~s~~~sp~~~~~~~~l~ 370 (1124)
+..+.. + +...+.+++++|+|+.+++...++.|.+|+..+. ...++.. .+...+.+++++|++ +.++
T Consensus 112 ~~~~~~---~----~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~p~~i~~~~~g----~l~v 179 (286)
T 1q7f_A 112 VRKFGA---T----ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKFGCSKHLEFPNGVVVNDKQ----EIFI 179 (286)
T ss_dssp EEEECT---T----TCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEECTTTCSSEEEEEECSSS----EEEE
T ss_pred EEEecC---c----cCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EEEEeCCCCccCCcEEEEECCCC----CEEE
Confidence 554431 1 4456899999999998888888899999997654 4555532 124568899999987 6666
Q ss_pred Eee---eEEEEeCCCCeEEEEec-CCcceE--EEEec-cceEEeeccCC-ceeeeEeeecCCeEEEeecCCCccceeeec
Q 001202 371 SGT---SMMQWDEYGYRLYAIEE-GSSERV--LIFSF-GKCCLNRGVSG-MTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (1124)
Q Consensus 371 sg~---~i~~W~~~~~~l~~~~~-~~~~~v--~~~s~-~k~~~s~s~d~-~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~ 442 (1124)
+.. .+..|+..+..+..... ++.... ++++. ++..++...++ .+.+|+. .+..
T Consensus 180 ~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~------------------ 240 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQL------------------ 240 (286)
T ss_dssp EEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCE------------------
T ss_pred EECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCE------------------
Confidence 643 88899987654433321 111233 44544 55556655554 6776662 1111
Q ss_pred ccceeecc--CCCceEEEEEccCCCEEEEEcCCCeE-EEEcCC
Q 001202 443 NLPVSYIS--QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1124)
Q Consensus 443 ~~p~~~~~--~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~s 482 (1124)
...+.. ....+..++++|+|+.+++ +.++.+ +|+...
T Consensus 241 --~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 241 --ISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp --EEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred --EEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 111111 1223678999999986666 578999 998754
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.12 E-value=1.1e-08 Score=116.01 Aligned_cols=234 Identities=12% Similarity=0.086 Sum_probs=135.5
Q ss_pred CCcEEEEEec---------CCceEeeeccccceecCCCCeEEEEEccCCCEEEEEecC---Ce--EEEEEcCCCCceeEE
Q 001202 229 NGQLMSCSVS---------KKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR---GV--VELYDLAESASLIRT 294 (1124)
Q Consensus 229 dG~~~~~~~~---------d~~i~~wd~~~~~~~~gh~~~v~va~spdg~lLAsGs~D---gt--V~vwd~~~~~~~~~~ 294 (1124)
||+.++.... +..+.+|+..+++...- ....+++|||||+.||.++.+ +. |.+|++++ ++....
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~-g~~~~l 100 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET-LSSKKI 100 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT-TEEEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC-CceEEE
Confidence 6766655421 34566777665432211 222389999999999988764 44 66667665 444333
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC---------------------------CcEEEEEcCCCeeeEEecc
Q 001202 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---------------------------RGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 295 l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D---------------------------g~I~vWdv~~~~l~~tl~~ 347 (1124)
.. +.+ +.+++|||||+.|+.++.+ ..|.+|++.++..+..+..
T Consensus 101 ~~---------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~ 170 (347)
T 2gop_A 101 LE---------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK 170 (347)
T ss_dssp EE---------ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE
T ss_pred Ec---------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC
Confidence 33 234 8999999999999888743 5689999998876455544
Q ss_pred CCcCceeeeEEcCCCCCCcceEEEee----------eEEEEeCCCCeEEEEecCCcceEEEEec-cceEEeeccCC----
Q 001202 348 ISLSSISSPIVKPNQDCKYEPLMSGT----------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSG---- 412 (1124)
Q Consensus 348 h~~~~V~s~~~sp~~~~~~~~l~sg~----------~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~---- 412 (1124)
. .+..++|+|++ .+.++. ...+|...+++......+ ..+..+++ ++.++..+.+.
T Consensus 171 --~-~~~~~~~spdg-----~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~--~~~~~~spdg~~l~~~~~~~~~~~ 240 (347)
T 2gop_A 171 --P-RFSSGIWHRDK-----IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK--VSFYAVDSDGERILLYGKPEKKYM 240 (347)
T ss_dssp --E-TTCEEEEETTE-----EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE--ESEEEEEECSSCEEEEECCSSSCC
T ss_pred --C-CcccccCCCCe-----EEEEEecccccccccccccEEEeCCCceEEeccC--cceeeECCCCCEEEEEEccccCCc
Confidence 2 67788899875 222221 123333224443332221 33333355 55555444322
Q ss_pred --ceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEE-EEEccCCCEEEEEcCCCeE-EEEcCCCcEEEe
Q 001202 413 --MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH-VAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (1124)
Q Consensus 413 --~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~-va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f 488 (1124)
...+|.+. +.. ......++...+.. ++|+ || .+++++.+|.+ +| +.+++....
T Consensus 241 ~~~~~l~~~d-~~~-------------------~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~ 297 (347)
T 2gop_A 241 SEHNKLYIYD-GKE-------------------VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPI 297 (347)
T ss_dssp CSSCEEEEEC-SSC-------------------EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEE
T ss_pred cccceEEEEC-CCc-------------------eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEE
Confidence 11222221 111 01112245667876 8999 99 99999999999 99 876654432
Q ss_pred cCcCceeeeEEEEEEecCCEEEEE
Q 001202 489 GDITQEQKIQSKGLLWLGKIIVVC 512 (1124)
Q Consensus 489 ~~~~~e~~~~v~gl~W~~~~liv~ 512 (1124)
... ...+.++.|.+ .+++.
T Consensus 298 ~~~----~~~v~~~~~s~-~~~~~ 316 (347)
T 2gop_A 298 AKG----RHWIMGFDVDE-IVVYL 316 (347)
T ss_dssp ECS----SSEEEEEEESS-SEEEE
T ss_pred ecC----CCeEEeeeeeC-cEEEE
Confidence 211 23466788877 44443
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.12 E-value=1.3e-08 Score=126.75 Aligned_cols=236 Identities=11% Similarity=0.073 Sum_probs=139.7
Q ss_pred ccCCCE-EEEEec-CCeEEEEEcCCCC-ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC----------CcE
Q 001202 265 APEQQI-LAVGTR-RGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS----------RGL 331 (1124)
Q Consensus 265 spdg~l-LAsGs~-DgtV~vwd~~~~~-~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D----------g~I 331 (1124)
||||+. ||.++. ++.|.+++++..+ .....+.... ...|...+.+++|||||+.|++++.| ..|
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~---~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i 163 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS---AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFL 163 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC---CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc---cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEE
Confidence 499998 887654 4455555543002 3344443100 01156678999999999999999887 589
Q ss_pred EEEEcCC------CeeeEEec-cCCcCceeeeEEcCCCCCCcceEEEee-----------eEEEEeCC-CC---eEEEEe
Q 001202 332 TVWSVSG------CRLMSTIR-QISLSSISSPIVKPNQDCKYEPLMSGT-----------SMMQWDEY-GY---RLYAIE 389 (1124)
Q Consensus 332 ~vWdv~~------~~l~~tl~-~h~~~~V~s~~~sp~~~~~~~~l~sg~-----------~i~~W~~~-~~---~l~~~~ 389 (1124)
.+|++.+ +.. ..+. .+ ...+.+++|+||+ +.++..+ .+.+|+.+ ++ +.....
T Consensus 164 ~~~~~~~~~~~~~~~~-~~l~~~~-~~~~~~~~~SpDG----~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~ 237 (662)
T 3azo_A 164 AAVPLDGSAAADRSAV-RELSDDA-HRFVTGPRLSPDG----RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL 237 (662)
T ss_dssp EEEETTSTTTTCGGGS-EESSCSC-SSEECCCEECTTS----SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEECCCCccccCCce-eEEEecC-CCcccCceECCCC----CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence 9999988 554 3444 43 4578899999999 6665332 57788988 46 554444
Q ss_pred cCCcceE--EEEec-cceEEeeccCCceeeeEeeecCCeE-EEeecCCCccceeeecccceeeccCCCc--eEEEEEccC
Q 001202 390 EGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRL-LVVQSEDTDELKILHLNLPVSYISQNWP--VQHVAASKD 463 (1124)
Q Consensus 390 ~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l-~l~~~~~~~~~~w~~~~~p~~~~~~~~~--I~~va~Spd 463 (1124)
.++...+ ..+++ ++.+++++.++..++|.+....... .+..+ ........|. +.+++|+|+
T Consensus 238 ~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~-------------~~~~~~p~w~~~~~~~~~~~~ 304 (662)
T 3azo_A 238 GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR-------------EEEFAGPLWTPGMRWFAPLAN 304 (662)
T ss_dssp EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC-------------SSBSSCCCCSTTCCSEEECTT
T ss_pred CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc-------------cccccCccccccCceEeEeCC
Confidence 4444455 45565 7766777777765665543211111 00000 0000011111 567899999
Q ss_pred CCEEEEEcCCCeE-EE--EcCCCcEEEecCcCceeeeEEEEE-EecCCEEEEEEEecCCCeEEEEEeeC
Q 001202 464 GMFLAVAGLHGLI-LY--DIRQKKWRVFGDITQEQKIQSKGL-LWLGKIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 464 G~~lAvag~dG~v-lw--d~~sg~wk~f~~~~~e~~~~v~gl-~W~~~~liv~~~~~~~~~~elrly~~ 528 (1124)
|+.+++++. |.+ +| |..+++.+.+... +. .+..+ ...++.++..+... +...++..++.
T Consensus 305 ~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~--~~--~~~~~~s~~~~~~~~~~~~~-~~~~~i~~~d~ 367 (662)
T 3azo_A 305 GLIAVVHGK-GAAVLGILDPESGELVDAAGP--WT--EWAATLTVSGTRAVGVAASP-RTAYEVVELDT 367 (662)
T ss_dssp SCEEEEEBS-SSCEEEEEETTTTEEEECCSS--CC--EEEEEEEEETTEEEEEEEET-TEEEEEEEEET
T ss_pred CEEEEEEEc-CccEEEEEECCCCcEEEecCC--CC--eEEEEEecCCCEEEEEEcCC-CCCCEEEEEEC
Confidence 999999999 888 88 6667776655332 21 23445 56677666554422 23334444443
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.11 E-value=1.3e-09 Score=125.55 Aligned_cols=149 Identities=9% Similarity=0.062 Sum_probs=97.1
Q ss_pred EEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-E-------------------EEEccCCCEEEEE-----ec
Q 001202 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-C-------------------ASIAPEQQILAVG-----TR 276 (1124)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~-------------------va~spdg~lLAsG-----s~ 276 (1124)
+++|||+.++....+..+.+|+..+++.. ..+.... . ++++|+++.++.+ ..
T Consensus 87 ~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 87 FISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNP 166 (396)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred eECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCC
Confidence 45678887777777777788876654321 2233322 2 3567888776654 35
Q ss_pred CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECC-CCCEEEEEECC------CcEEEEEcCCCeeeEEeccCC
Q 001202 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS------RGLTVWSVSGCRLMSTIRQIS 349 (1124)
Q Consensus 277 DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~D------g~I~vWdv~~~~l~~tl~~h~ 349 (1124)
++.|.+||+.+ ++...... +...+..++|+| ||..|+.++.+ ..|.+|++.++... .+..+.
T Consensus 167 ~~~l~~~d~~~-g~~~~~~~---------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~ 235 (396)
T 3c5m_A 167 TCRLIKVDIET-GELEVIHQ---------DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHA 235 (396)
T ss_dssp CEEEEEEETTT-CCEEEEEE---------ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCC
T ss_pred cceEEEEECCC-CcEEeecc---------CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccC
Confidence 66899999876 55443332 456789999999 89888777654 35888898776533 332221
Q ss_pred -cCceeeeEEcCCCCCCcceEEEee--------eEEEEeCCCCeEEEE
Q 001202 350 -LSSISSPIVKPNQDCKYEPLMSGT--------SMMQWDEYGYRLYAI 388 (1124)
Q Consensus 350 -~~~V~s~~~sp~~~~~~~~l~sg~--------~i~~W~~~~~~l~~~ 388 (1124)
...+..++|+|++ +.++..+ .+.+|+..+++....
T Consensus 236 ~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l 279 (396)
T 3c5m_A 236 EGESCTHEFWIPDG----SAMAYVSYFKGQTDRVIYKANPETLENEEV 279 (396)
T ss_dssp TTEEEEEEEECTTS----SCEEEEEEETTTCCEEEEEECTTTCCEEEE
T ss_pred CCccccceEECCCC----CEEEEEecCCCCccceEEEEECCCCCeEEe
Confidence 2357889999998 5554332 388899888765443
No 175
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.11 E-value=1.9e-09 Score=135.31 Aligned_cols=232 Identities=8% Similarity=-0.062 Sum_probs=145.0
Q ss_pred EEEecCCcEEEEEe-----cCCceEeeecccccee-cCCCCe---EEEEEccCCCEEEEEecCCe-------------EE
Q 001202 224 FVLYSNGQLMSCSV-----SKKGLKLAEFIKIDKE-LGSGDA---VCASIAPEQQILAVGTRRGV-------------VE 281 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~-----~d~~i~~wd~~~~~~~-~gh~~~---v~va~spdg~lLAsGs~Dgt-------------V~ 281 (1124)
+.++|||+.++... .+.++++||..+++.. ..+... ..++|+|||+.|+.++.|++ |+
T Consensus 126 ~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~ 205 (695)
T 2bkl_A 126 WAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR 205 (695)
T ss_dssp EEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred EEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE
Confidence 44557888777443 3467999998887654 322221 37899999999999998876 99
Q ss_pred EEEcCCCCce--eEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCC----cEEEEEcCCCeeeEEeccCCcCceee
Q 001202 282 LYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR----GLTVWSVSGCRLMSTIRQISLSSISS 355 (1124)
Q Consensus 282 vwd~~~~~~~--~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg----~I~vWdv~~~~l~~tl~~h~~~~V~s 355 (1124)
+|++.+ +.. ..... . .+|...+..++|||||++|+.++.++ .|.+|+..++.. ..+..+ ...+..
T Consensus 206 ~~~l~t-~~~~~~lv~~--~----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~-~~~~~~ 276 (695)
T 2bkl_A 206 YHTLGT-EPSKDTVVHE--R----TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKG-VGAKYE 276 (695)
T ss_dssp EEETTS-CGGGCEEEEC--C----CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEEC-SSCCEE
T ss_pred EEECCC-CchhceEEEe--c----CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecC-CCceEE
Confidence 999987 431 12222 1 12567789999999999998887766 677777655543 334333 234455
Q ss_pred eEEcCCCCCCcceEE-Ee-----eeEEEEeCCCCeE---EEEecCC-cceEEEEec--cceEEeeccCCceeeeEeeecC
Q 001202 356 PIVKPNQDCKYEPLM-SG-----TSMMQWDEYGYRL---YAIEEGS-SERVLIFSF--GKCCLNRGVSGMTYARQVIYGE 423 (1124)
Q Consensus 356 ~~~sp~~~~~~~~l~-sg-----~~i~~W~~~~~~l---~~~~~~~-~~~v~~~s~--~k~~~s~s~d~~v~~w~l~~~~ 423 (1124)
+.+ +++ ..++ +. ..+..|+..+++. ......+ ...+..+.+ ++.+++...|+..++|.+....
T Consensus 277 ~~~-~~g----~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g 351 (695)
T 2bkl_A 277 VHA-WKD----RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKG 351 (695)
T ss_dssp EEE-ETT----EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTC
T ss_pred EEe-cCC----cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCC
Confidence 555 555 3222 21 2678888876542 2222222 334544444 5567788888888888765322
Q ss_pred CeEEEeecCCCccceeeecccceeecc-CCCceEEEEEccCCCEEEEEc----CCCeE-EEEcCCCcEEEe
Q 001202 424 DRLLVVQSEDTDELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAG----LHGLI-LYDIRQKKWRVF 488 (1124)
Q Consensus 424 ~~l~l~~~~~~~~~~w~~~~~p~~~~~-~~~~I~~va~SpdG~~lAvag----~dG~v-lwd~~sg~wk~f 488 (1124)
.. ...+.. ....|..++++|||+.++... ..+.+ +||+.+++.+.+
T Consensus 352 ~~-------------------~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l 403 (695)
T 2bkl_A 352 KP-------------------VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELW 403 (695)
T ss_dssp CE-------------------EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred Ce-------------------eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 11 111112 245577788999998887443 34677 899988775544
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.09 E-value=6.5e-09 Score=117.84 Aligned_cols=254 Identities=10% Similarity=0.044 Sum_probs=152.1
Q ss_pred ceEEEEeeCCeEEEEEcCC-------------------------cEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEe
Q 001202 22 QQIIYFKVNNGLLLIASPC-------------------------HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWS 76 (1124)
Q Consensus 22 ~~iv~fS~dg~llA~~~~~-------------------------~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wS 76 (1124)
-.-|+++|+|+++++...+ +|.+||.. .+..+.... . ........++++
T Consensus 26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~-~----~~~~~p~gia~d 99 (329)
T 3fvz_A 26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN-NAEILQSSG-K----NLFYLPHGLSID 99 (329)
T ss_dssp EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT-TCCEEEEEC-T----TTCSSEEEEEEC
T ss_pred ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC-CCeEEeccC-C----CccCCceEEEEC
Confidence 3448899999999887655 69999985 443332221 0 122345689999
Q ss_pred cCCcEEEEEeCCCeEEEEEeeecCceee-cCCCCCCCcceeeEEEEeeeeeecccccceEEEEeec--CCeEEEEe--cC
Q 001202 77 PDTKLIAVVTSSLYLHIFKVQITEKSIQ-IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD--NKHMLLGL--SD 151 (1124)
Q Consensus 77 PDg~~Lav~t~dg~l~i~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d--~~~llv~t--~d 151 (1124)
|||+.+++.+.++.|+.|+.......+. .......+. -.........++.+ +..++++. .+
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~--------------~~~~~~~P~~ia~~~~~g~lyv~d~~~~ 165 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGS--------------DQNHFCQPTDVAVEPSTGAVFVSDGYCN 165 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCC--------------STTCCSSEEEEEECTTTCCEEEEECSSC
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCC--------------CccccCCCcEEEEeCCCCeEEEEeCCCC
Confidence 9999888888889999998754311111 111000000 00011123344443 34555554 47
Q ss_pred CcEEEEeccCccccceeeccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecC-C
Q 001202 152 GSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN-G 230 (1124)
Q Consensus 152 g~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~d-G 230 (1124)
+.|++++-++.....+. ...... ....... .....++++++ |
T Consensus 166 ~~I~~~~~~g~~~~~~~---------------~~g~~~---------------~~~~~~~-------~~p~gia~d~~~g 208 (329)
T 3fvz_A 166 SRIVQFSPSGKFVTQWG---------------EESSGS---------------SPRPGQF-------SVPHSLALVPHLD 208 (329)
T ss_dssp CEEEEECTTSCEEEEEC---------------EECCSS---------------SCCTTEE-------SCEEEEEEETTTT
T ss_pred CeEEEEcCCCCEEEEec---------------cCCCCC---------------CCCCccc-------CCCcEEEEECCCC
Confidence 78877653332211110 000000 0000000 01135667788 8
Q ss_pred cEEEEEecCCceEeeecccccee-----cCCCCeE-EEEEccCCCEEEEE-------ecCCeEEEEEcCCCCceeEEEee
Q 001202 231 QLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPEQQILAVG-------TRRGVVELYDLAESASLIRTVSL 297 (1124)
Q Consensus 231 ~~~~~~~~d~~i~~wd~~~~~~~-----~gh~~~v-~va~spdg~lLAsG-------s~DgtV~vwd~~~~~~~~~~l~~ 297 (1124)
+++++...++.++.|+..+++.. .++...+ .++++| +..+++. +.+.+|++|+..+ ++.+.++..
T Consensus 209 ~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~ 286 (329)
T 3fvz_A 209 QLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKP 286 (329)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECC
T ss_pred EEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcC
Confidence 88888888889999987755433 2455566 899999 4444433 3455899999987 777766531
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001202 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~ 339 (1124)
..++...+..|+++|||..+++.+.++.|++|++.+.
T Consensus 287 -----~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 287 -----VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp -----SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred -----CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 1236677899999999988888889999999998653
No 177
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.08 E-value=1.5e-08 Score=112.49 Aligned_cols=230 Identities=9% Similarity=-0.034 Sum_probs=139.7
Q ss_pred cceEEEEecCCc-EEEEEecCCceEeeeccccc-eecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEe
Q 001202 220 MRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKID-KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS 296 (1124)
Q Consensus 220 ~~~~~~~s~dG~-~~~~~~~d~~i~~wd~~~~~-~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~ 296 (1124)
.....+++++|+ +++++..++.+..|+..+.. .+..+...+ +++++|+|+++++...++.|.+|+..+ ++......
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~-g~~~~~~~ 107 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG-GEWESIAD 107 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT-CCEEEEEC
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC-CcEEEEee
Confidence 344667778888 67777778888888876541 223455556 999999999988887789999999866 54332222
Q ss_pred eccCCCCCCCCCCeEEEEECCCCCEEEEEEC-----------------CCcEEEEEcCCCeeeEEeccCCcCceeeeEEc
Q 001202 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-----------------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (1124)
Q Consensus 297 ~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~-----------------Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~s 359 (1124)
... + .....+.+++++|||+.+++.+. .+.|..++.. +.. ..+..+ ......++++
T Consensus 108 ~~~-~---~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~-~~~~~gi~~s 180 (296)
T 3e5z_A 108 SFE-G---KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRD-RVKPNGLAFL 180 (296)
T ss_dssp EET-T---EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECC-CSSEEEEEEC
T ss_pred ccC-C---CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecC-CCCCccEEEC
Confidence 110 1 01234678999999998887321 2345555544 333 333333 4567889999
Q ss_pred CCCCCCcceEEEee---eEEEEeCC-CCeE---EEEecCCcceE--EEEec-cceEEeeccCCceeeeEeeecCCeEEEe
Q 001202 360 PNQDCKYEPLMSGT---SMMQWDEY-GYRL---YAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVV 429 (1124)
Q Consensus 360 p~~~~~~~~l~sg~---~i~~W~~~-~~~l---~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~ 429 (1124)
|++ +.+++.. .+..|+.. ++.+ ......+...+ ++++. ++..++. ++.+..|+.. +..
T Consensus 181 ~dg----~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~----- 248 (296)
T 3e5z_A 181 PSG----NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE----- 248 (296)
T ss_dssp TTS----CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE-----
T ss_pred CCC----CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE-----
Confidence 998 6555433 77788875 3443 11111111111 33333 3333332 4445554421 111
Q ss_pred ecCCCccceeeecccceeeccCCCceEEEEE-ccCCCEEEEEcCCCeEEEEcCCCcE
Q 001202 430 QSEDTDELKILHLNLPVSYISQNWPVQHVAA-SKDGMFLAVAGLHGLILYDIRQKKW 485 (1124)
Q Consensus 430 ~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~-SpdG~~lAvag~dG~vlwd~~sg~w 485 (1124)
...+..+.. +.+++| +|||+.|.+++.+|+..++..+++.
T Consensus 249 ---------------~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 249 ---------------LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGL 289 (296)
T ss_dssp ---------------EEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBC
T ss_pred ---------------EEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccccc
Confidence 223333444 788999 6999999999998877888877653
No 178
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.05 E-value=6.7e-08 Score=106.51 Aligned_cols=145 Identities=9% Similarity=0.101 Sum_probs=95.8
Q ss_pred EEEEecCCcEEEEEecCCceEeeeccccce--e--cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEee
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--E--LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~--~--~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~ 297 (1124)
.+++.++|+++++...++.+..|+...... . .++.... +++++|+|+++++.+.++.|++|+.+ +..+.++..
T Consensus 125 ~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~ 202 (286)
T 1q7f_A 125 GVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLRQIGG 202 (286)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEEEESC
T ss_pred EEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC--CCEEEEEcc
Confidence 345557888777766677788887432111 1 1333445 99999999998888889999999974 444544431
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCEEEEEECCC-cEEEEEcCCCeeeEEeccCC-cCceeeeEEcCCCCCCcceEEEee--
Q 001202 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-GLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQDCKYEPLMSGT-- 373 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg-~I~vWdv~~~~l~~tl~~h~-~~~V~s~~~sp~~~~~~~~l~sg~-- 373 (1124)
.+ +...+..++++|||+.+++.+.++ .|.+|+..+ ..+.++..+. ...+.+++++|++ +.+++..
T Consensus 203 --~g----~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~i~~~~~g----~l~vs~~~~ 271 (286)
T 1q7f_A 203 --EG----ITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLISALESKVKHAQCFDVALMDDG----SVVLASKDY 271 (286)
T ss_dssp --TT----TSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEEEEEEESSCCSCEEEEEEETTT----EEEEEETTT
T ss_pred --CC----ccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CEEEEEcccCCCCcceeEEECCCC----cEEEECCCC
Confidence 11 345689999999999999888886 999999765 4455554431 2235566777766 4444322
Q ss_pred eEEEEeC
Q 001202 374 SMMQWDE 380 (1124)
Q Consensus 374 ~i~~W~~ 380 (1124)
++.+|+.
T Consensus 272 ~v~v~~~ 278 (286)
T 1q7f_A 272 RLYIYRY 278 (286)
T ss_dssp EEEEEEC
T ss_pred eEEEEEc
Confidence 4555543
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.05 E-value=1.9e-08 Score=126.63 Aligned_cols=229 Identities=8% Similarity=-0.043 Sum_probs=142.0
Q ss_pred EEEecCCcEEEEEecCC-----ceEeeeccccceec---CCCCeEEEEEccCCCEEEEEecCCe----------------
Q 001202 224 FVLYSNGQLMSCSVSKK-----GLKLAEFIKIDKEL---GSGDAVCASIAPEQQILAVGTRRGV---------------- 279 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~-----~i~~wd~~~~~~~~---gh~~~v~va~spdg~lLAsGs~Dgt---------------- 279 (1124)
..++|||+.++.+.+++ ++++||..+++... .+.+...++|+|||+.|+.++.++.
T Consensus 130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (710)
T 2xdw_A 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK 209 (710)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCE
Confidence 45558888877665432 78999988776431 1222127899999999999998876
Q ss_pred EEEEEcCCCCcee-EEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC-----CCcEEEEEcCC------Ce-eeEEec
Q 001202 280 VELYDLAESASLI-RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-----SRGLTVWSVSG------CR-LMSTIR 346 (1124)
Q Consensus 280 V~vwd~~~~~~~~-~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~-----Dg~I~vWdv~~------~~-l~~tl~ 346 (1124)
|.+|++.+ +... ..+. . + ..|...+..++|||||++|+.++. +..|.+||+.+ +. ....+.
T Consensus 210 v~~~~l~t-~~~~~~~v~-~--~--~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~ 283 (710)
T 2xdw_A 210 LYYHVLGT-DQSEDILCA-E--F--PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI 283 (710)
T ss_dssp EEEEETTS-CGGGCEEEE-C--C--TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred EEEEECCC-CcccceEEe-c--c--CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee
Confidence 99999976 4321 1111 1 1 125666889999999999988775 56899999976 42 345555
Q ss_pred cCCcCceeeeEEcCCCCCCcceEE-Eee------eEEEEeCCCCe--EEEEecCCcc--eEE--EEec-cceEEeeccCC
Q 001202 347 QISLSSISSPIVKPNQDCKYEPLM-SGT------SMMQWDEYGYR--LYAIEEGSSE--RVL--IFSF-GKCCLNRGVSG 412 (1124)
Q Consensus 347 ~h~~~~V~s~~~sp~~~~~~~~l~-sg~------~i~~W~~~~~~--l~~~~~~~~~--~v~--~~s~-~k~~~s~s~d~ 412 (1124)
.+ ...+.. .++|++ ..+. .+. .+..|+..++. .+.....+.. .+. .+.. ++.+++...++
T Consensus 284 ~~-~~~~~~-~~s~dg----~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g 357 (710)
T 2xdw_A 284 DN-FEGEYD-YVTNEG----TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV 357 (710)
T ss_dssp CS-SSSCEE-EEEEET----TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred CC-CCcEEE-EEeccC----CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC
Confidence 54 233333 467776 3332 211 57788887753 1122222222 343 3332 45566777777
Q ss_pred ceeeeEeee--cCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcC----CCeE-EEEcCCCc
Q 001202 413 MTYARQVIY--GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL----HGLI-LYDIRQKK 484 (1124)
Q Consensus 413 ~v~~w~l~~--~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~----dG~v-lwd~~sg~ 484 (1124)
..++|.+.. +.. ...+..+.+.|..++++|+|+.++.... .+.+ .||+.+++
T Consensus 358 ~~~l~~~~~~~g~~--------------------~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 358 KNTLQLHDLATGAL--------------------LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEEETTTCCE--------------------EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEEEECCCCCE--------------------EEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 666655432 221 1222334566888999999987774432 3677 88988776
No 180
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.04 E-value=1.3e-07 Score=108.79 Aligned_cols=278 Identities=12% Similarity=0.033 Sum_probs=159.5
Q ss_pred CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeC----------CCeEEEEEeeecCceeecCCC
Q 001202 39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----------SLYLHIFKVQITEKSIQIGGK 108 (1124)
Q Consensus 39 ~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~----------dg~l~i~~v~~~~~~~~~~~~ 108 (1124)
+++|++||.. .+..+.... . |..-.++|||||++++++.. ++.|.+||+.+.+..
T Consensus 30 d~~v~v~D~~-t~~~~~~i~-~-------g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~------ 94 (361)
T 2oiz_A 30 ESRVHVYDYT-NGKFLGMVP-T-------AFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE------ 94 (361)
T ss_dssp GCEEEEEETT-TCCEEEEEE-C-------CEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE------
T ss_pred cCeEEEEECC-CCeEEEEec-C-------CCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE------
Confidence 5689999985 444443321 1 22228999999999999873 577999997643211
Q ss_pred CCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEec--CCcEEEEeccCccccceeeccCCCCcccccc-cccc
Q 001202 109 QPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAAL-SHHF 185 (1124)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~--dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~~-i~fs 185 (1124)
..+..... ....+....-.++.+|++.++++.. ++.|.++ |....... .. ++.
T Consensus 95 -------~~i~~~~~--~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~--d~~~~~~~------------~~~i~~- 150 (361)
T 2oiz_A 95 -------KEISLPPK--RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIV--DVAKGDYV------------EDVTAA- 150 (361)
T ss_dssp -------EEEEECTT--BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEE--ETTTTEEE------------EEEGGG-
T ss_pred -------EEEEcCcc--ccccCCCcceEEECCCCCEEEEECCCCCCeEEEE--ECCCCcEE------------EEEecC-
Confidence 00100000 0000111122466778888988874 4677765 43332211 00 000
Q ss_pred CCCCcccccCCCCeeecccCCCCceEEEEEecCCc-ceEEEEecCCcEEEEEecC-CceEeeeccccceecCCCCeEEEE
Q 001202 186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDKELGSGDAVCAS 263 (1124)
Q Consensus 186 ~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~-~~~~~~s~dG~~~~~~~~d-~~i~~wd~~~~~~~~gh~~~v~va 263 (1124)
... ..+...|.. ..++++++||+++...... +.+. ........+......+.+.
T Consensus 151 ----------------------~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~-~~~~~~~~~~~~~~~~~~~ 206 (361)
T 2oiz_A 151 ----------------------AGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA-SQSRSKQMFSVKDDPIFIA 206 (361)
T ss_dssp ----------------------TTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE-EEEECCCCSCTTTSCBCSC
T ss_pred ----------------------CCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe-eeccccceEcCCCCceEEE
Confidence 000 001122322 3566777888877665532 3322 0010001111222334445
Q ss_pred EccCCCEEEEEecCCeEEEEEcCCCC-ceeEEEeecc-----CCCCCCCCCCeEEEEECCCCCEEEEEEC----------
Q 001202 264 IAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYD-----WGYSMDDTGPVSCIAWTPDNSAFAVGWK---------- 327 (1124)
Q Consensus 264 ~spdg~lLAsGs~DgtV~vwd~~~~~-~~~~~l~~~~-----~g~~~~h~g~V~~lawSPDG~~Lasgs~---------- 327 (1124)
++|++..++..+.+|+|.++|+.... .....+.... .+. ..+....++|+|||..+.++..
T Consensus 207 ~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~ 283 (361)
T 2oiz_A 207 PALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNW---VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKF 283 (361)
T ss_dssp CEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTC---EECCSSCEEEETTTTEEEEEEESSCCTTCTTC
T ss_pred ecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccc---ccCCeeEEEEecCCCeEEEEEccCCCcccccC
Confidence 57888888888889999999987522 1222222110 000 0011223789999988877654
Q ss_pred -CCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee--eEEEEeCCCC--eEEEEe
Q 001202 328 -SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGY--RLYAIE 389 (1124)
Q Consensus 328 -Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~--~l~~~~ 389 (1124)
.+.|.+||+.+++.+.++..++ ..+++|+|++ +.+.++. ++.+||..++ +++...
T Consensus 284 ~~~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg----~~l~v~n~~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 284 PAAEIWVMDTKTKQRVARIPGRD---ALSMTIDQQR----NLMLTLDGGNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp CCSEEEEEETTTTEEEEEEECTT---CCEEEEETTT----TEEEEECSSCEEEEECSSSSCEEEEEE
T ss_pred CCceEEEEECCCCcEEEEEecCC---eeEEEECCCC----CEEEEeCCCeEEEEECCCCcceeeEEe
Confidence 3479999999999999998873 8999999998 6655443 8889999999 887775
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.03 E-value=7.3e-08 Score=121.26 Aligned_cols=131 Identities=11% Similarity=0.057 Sum_probs=88.4
Q ss_pred EEEEecCCcEEEEEec-----CCceEeeeccc------c----ceecCCCCeEEEEEccCCCEEEEEecC----CeEEEE
Q 001202 223 LFVLYSNGQLMSCSVS-----KKGLKLAEFIK------I----DKELGSGDAVCASIAPEQQILAVGTRR----GVVELY 283 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~-----d~~i~~wd~~~------~----~~~~gh~~~v~va~spdg~lLAsGs~D----gtV~vw 283 (1124)
.+.++|||+.++..+. +..+.+|+..+ + ..+..+.+.+...|+|+|+.|+..+.+ +.|.+|
T Consensus 237 ~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 237 GAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp EEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEE
Confidence 4556688888777664 45677888765 3 223456666644689999988877653 369999
Q ss_pred EcCCCCc-eeEEEeeccCCCCCCCCC--CeEEEEECCCCCEEEEEECCCc--EEEEEcCCCeeeEEeccCCcCceeeeEE
Q 001202 284 DLAESAS-LIRTVSLYDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRG--LTVWSVSGCRLMSTIRQISLSSISSPIV 358 (1124)
Q Consensus 284 d~~~~~~-~~~~l~~~~~g~~~~h~g--~V~~lawSPDG~~Lasgs~Dg~--I~vWdv~~~~l~~tl~~h~~~~V~s~~~ 358 (1124)
++++... ....+. + |.. .+..++|++++..++++..|+. |.+|++.++.....+..+ ...+.++++
T Consensus 317 d~~~~~~~~~~~l~----~----~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~ 387 (710)
T 2xdw_A 317 DFTDPEESKWKVLV----P----EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSG 387 (710)
T ss_dssp ETTSCCGGGCEEEE----C----CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEEC
T ss_pred eCCCCCcccceecc----C----CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-CceEEEEec
Confidence 9876221 234443 2 333 6888999988888999998885 556677566666777665 556777777
Q ss_pred cCCC
Q 001202 359 KPNQ 362 (1124)
Q Consensus 359 sp~~ 362 (1124)
+|++
T Consensus 388 s~d~ 391 (710)
T 2xdw_A 388 QKKD 391 (710)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 7765
No 182
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.99 E-value=2.5e-08 Score=126.15 Aligned_cols=236 Identities=9% Similarity=-0.023 Sum_probs=146.0
Q ss_pred EEEEecCCcEEEEEecC-----CceEeeeccccceecCCCC--eE-EEEEccCCCEEEEEecCCe--------------E
Q 001202 223 LFVLYSNGQLMSCSVSK-----KGLKLAEFIKIDKELGSGD--AV-CASIAPEQQILAVGTRRGV--------------V 280 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d-----~~i~~wd~~~~~~~~gh~~--~v-~va~spdg~lLAsGs~Dgt--------------V 280 (1124)
...++|||+.++.+.++ .++++||..+++....+.. .+ .++|+|| +.|+.++.|+. |
T Consensus 167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v 245 (741)
T 1yr2_A 167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTV 245 (741)
T ss_dssp EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEE
T ss_pred eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEE
Confidence 34556888887776643 4588999887765432211 12 6799999 99999887665 8
Q ss_pred EEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCC-----cEEEEEcCCC--eeeEEeccCCcCce
Q 001202 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-----GLTVWSVSGC--RLMSTIRQISLSSI 353 (1124)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg-----~I~vWdv~~~--~l~~tl~~h~~~~V 353 (1124)
.+|++.+....-..+. . + ..+...+..+.|||||++|+..+.++ .|.+||+.++ .....+..+ ...+
T Consensus 246 ~~~~lgt~~~~~~lv~-~--~--~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~ 319 (741)
T 1yr2_A 246 WLHRLGTPQSADQPVF-A--T--PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD-LKAQ 319 (741)
T ss_dssp EEEETTSCGGGCEEEE-C--C--TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS-SSSC
T ss_pred EEEECCCCchhCEEEe-c--c--CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC-CCce
Confidence 8999876221111121 1 1 12445689999999999998887654 7999999876 314455444 2333
Q ss_pred eeeEEcCCCCCCcceEEEee-------eEEEEeCCCC--eEEEEecCCcceEEEEec--cceEEeeccCCceeeeEeeec
Q 001202 354 SSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGY--RLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYG 422 (1124)
Q Consensus 354 ~s~~~sp~~~~~~~~l~sg~-------~i~~W~~~~~--~l~~~~~~~~~~v~~~s~--~k~~~s~s~d~~v~~w~l~~~ 422 (1124)
.... +|++ +.+...+ .+..|+.+++ +.......+...+..+.+ ++.+++...++..++|.+...
T Consensus 320 ~~~~-~~dg----~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~ 394 (741)
T 1yr2_A 320 WDFV-DGVG----DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLD 394 (741)
T ss_dssp EEEE-EEET----TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETT
T ss_pred EEEE-eccC----CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC
Confidence 4443 3666 4333221 5788988774 344444444444544444 456677778888888775422
Q ss_pred CCeEEEeecCCCccceeeecccceeec-cCCCceEEEEEccCCCEEEEE----cCCCeE-EEEcCCCcEEEec
Q 001202 423 EDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQHVAASKDGMFLAVA----GLHGLI-LYDIRQKKWRVFG 489 (1124)
Q Consensus 423 ~~~l~l~~~~~~~~~~w~~~~~p~~~~-~~~~~I~~va~SpdG~~lAva----g~dG~v-lwd~~sg~wk~f~ 489 (1124)
... ...+. .+...|..++++|||+.++.. ...+.+ .||+.+++.+.+.
T Consensus 395 g~~-------------------~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~ 448 (741)
T 1yr2_A 395 GKP-------------------AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWE 448 (741)
T ss_dssp SCE-------------------EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECS
T ss_pred CCc-------------------eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 211 11121 134568889999999877733 234677 8999888766553
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.99 E-value=4.3e-08 Score=111.06 Aligned_cols=217 Identities=9% Similarity=0.078 Sum_probs=132.1
Q ss_pred EEEEecCCcEEEEEecC---Cc--eEeeecccccee--cCCCCeE-EEEEccCCCEEEEEecC-----------------
Q 001202 223 LFVLYSNGQLMSCSVSK---KG--LKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRR----------------- 277 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d---~~--i~~wd~~~~~~~--~gh~~~v-~va~spdg~lLAsGs~D----------------- 277 (1124)
...++|||+.++....+ +. +.+|+..+++.. ..+.. + +++|+|||+.||.++.+
T Consensus 63 ~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 63 MPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp EEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred CeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence 45667888877766543 33 555565554322 22223 6 99999999999988753
Q ss_pred ----------CeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCC-------cEEEEEcCCCe
Q 001202 278 ----------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-------GLTVWSVSGCR 340 (1124)
Q Consensus 278 ----------gtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg-------~I~vWdv~~~~ 340 (1124)
..|.+|++.+ ++.+..+.. . .+..++||||| .++++..++ ...||.+.++.
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~-~~~~~~l~~---------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~ 209 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTES-EEVIEEFEK---------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK 209 (347)
T ss_dssp --------CEEEEEEEETTT-TEEEEEEEE---------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE
T ss_pred cCcccccCccceEEEEECCC-CeEEeeecC---------C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc
Confidence 5688889876 554355541 1 47889999999 888876652 44555554554
Q ss_pred eeEEeccCCcCceeeeEEcCCCCCCcceEEEee-----------eEEEEeCCCCeEEEEecCCcceEEE-Eec-cceEEe
Q 001202 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-----------SMMQWDEYGYRLYAIEEGSSERVLI-FSF-GKCCLN 407 (1124)
Q Consensus 341 l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~-----------~i~~W~~~~~~l~~~~~~~~~~v~~-~s~-~k~~~s 407 (1124)
. ..+..+ ..+.++ +|++ +.++..+ .+..|+ +++......++...+.. +.+ ...+++
T Consensus 210 ~-~~l~~~--~~~~~~--spdg----~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~sdg~~~~ 278 (347)
T 2gop_A 210 E-EKMFEK--VSFYAV--DSDG----ERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKDGKVYFT 278 (347)
T ss_dssp E-EEEEEE--ESEEEE--EECS----SCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEETTEEEEE
T ss_pred e-EEeccC--cceeeE--CCCC----CEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEcCcEEEE
Confidence 3 333322 234443 8887 5444322 455666 55554444454444432 222 336667
Q ss_pred eccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE--EEEcCCCcE
Q 001202 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDIRQKKW 485 (1124)
Q Consensus 408 ~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v--lwd~~sg~w 485 (1124)
++.++..++| +. ... +.....+...|.+++++| +.+++++.++.. +|.+. ++.
T Consensus 279 ~~~~~~~~l~-~~-~g~--------------------~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~ 333 (347)
T 2gop_A 279 LFEEGSVNLY-IW-DGE--------------------IKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEE 333 (347)
T ss_dssp EEETTEEEEE-EE-SSS--------------------EEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSE
T ss_pred EecCCcEEEE-Ec-CCc--------------------eEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcE
Confidence 7888888888 66 222 122334466789999999 677777777654 78776 554
Q ss_pred EEe
Q 001202 486 RVF 488 (1124)
Q Consensus 486 k~f 488 (1124)
+.+
T Consensus 334 ~~l 336 (347)
T 2gop_A 334 KQL 336 (347)
T ss_dssp EEC
T ss_pred EEe
Confidence 443
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.96 E-value=5.5e-08 Score=109.68 Aligned_cols=232 Identities=9% Similarity=0.030 Sum_probs=139.7
Q ss_pred cCCcEEEEEecCCceEeeeccccceecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCC
Q 001202 228 SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (1124)
Q Consensus 228 ~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h 306 (1124)
+++..++....+.+++.|.......+.++.... +++|+|+|++++++..++.|.+||.++ ++...... . +
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~-~~~~~~~~----~----~ 85 (333)
T 2dg1_A 15 GKSNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIKRPFV----S----H 85 (333)
T ss_dssp GGGGCSSCCCCGGGSCEEECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEE----C----S
T ss_pred CCccceeEEeecccCcccccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC-CcEEEEee----C----C
Confidence 444433333445566666333222234455555 999999999888999999999999876 54433322 1 4
Q ss_pred CCCeEEEEECCCCCEEEEEECC----CcEEEEEcCCCeeeEEecc-CCcCceeeeEEcCCCCCCcceEEEee--------
Q 001202 307 TGPVSCIAWTPDNSAFAVGWKS----RGLTVWSVSGCRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSGT-------- 373 (1124)
Q Consensus 307 ~g~V~~lawSPDG~~Lasgs~D----g~I~vWdv~~~~l~~tl~~-h~~~~V~s~~~sp~~~~~~~~l~sg~-------- 373 (1124)
.+.+.+++|+|||+.++++..+ +.|.+||..++.....+.. .....+.+++++|++ ..+++..
T Consensus 86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g----~l~v~~~~~~~~~~~ 161 (333)
T 2dg1_A 86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG----GFYFTDFRGYSTNPL 161 (333)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS----CEEEEECCCBTTBCC
T ss_pred CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC----CEEEEeccccccCCC
Confidence 5679999999999988887776 7899999988775434432 123568889999987 6666532
Q ss_pred -eEEEEeCCCCeEEEEecC-CcceEEEEec-cceE-EeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeec
Q 001202 374 -SMMQWDEYGYRLYAIEEG-SSERVLIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (1124)
Q Consensus 374 -~i~~W~~~~~~l~~~~~~-~~~~v~~~s~-~k~~-~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~ 449 (1124)
.+..++.+++++.....+ ....-+++++ ++.+ ++.+.++.+..|+.......+.... ......+.
T Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~-----------~~~~~~~~ 230 (333)
T 2dg1_A 162 GGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG-----------ATIPYYFT 230 (333)
T ss_dssp EEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE-----------EEEEEECC
T ss_pred ceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccccc-----------ceEEEecC
Confidence 344556655544332211 0111144555 4433 4445566777776542111110000 00011111
Q ss_pred cCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 450 ~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
++ ..+..++++++|+..++...++.+ +||...+.
T Consensus 231 ~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~ 265 (333)
T 2dg1_A 231 GH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYP 265 (333)
T ss_dssp SS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCE
T ss_pred CC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCCE
Confidence 22 356789999999988877777777 99985443
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.93 E-value=2.5e-07 Score=116.05 Aligned_cols=236 Identities=7% Similarity=-0.015 Sum_probs=132.1
Q ss_pred CCCCeE-EEEEccCCCEEEE-----EecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCe--EEEEECCCCCEEEEEE
Q 001202 255 GSGDAV-CASIAPEQQILAV-----GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPV--SCIAWTPDNSAFAVGW 326 (1124)
Q Consensus 255 gh~~~v-~va~spdg~lLAs-----Gs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V--~~lawSPDG~~Lasgs 326 (1124)
+|...+ .++|||||++||. |+.+.+|++||+++ ++.+. . . +...+ ..++|||||+.|+.++
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t-g~~~~--~----~----~~~~~~~~~~~wspDg~~l~~~~ 186 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS-GEWSK--V----D----VIEGGKYATPKWTPDSKGFYYEW 186 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT-CCBCS--S----C----CBSCCTTCCCEECTTSSEEEEEE
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC-CCCcC--C----c----ccCcccccceEEecCCCEEEEEE
Confidence 565567 9999999999994 44457899999987 54320 0 0 11112 6789999999999999
Q ss_pred CCCc-------------EEEEEcCCCe----eeEEeccCCcCceeeeEEcCCCCCCcceEEEee-------eEEEEeCCC
Q 001202 327 KSRG-------------LTVWSVSGCR----LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYG 382 (1124)
Q Consensus 327 ~Dg~-------------I~vWdv~~~~----l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~-------~i~~W~~~~ 382 (1124)
.|++ |++|++.++. ++....++ ...+.++.++|++ +.++.++ .+.+|+..+
T Consensus 187 ~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~-~~~~~~~~~SpDG----~~l~~~~~~~~~~~~l~~~~~~~ 261 (695)
T 2bkl_A 187 LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD-PTTFLQSDLSRDG----KYLFVYILRGWSENDVYWKRPGE 261 (695)
T ss_dssp CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC-TTCEEEEEECTTS----CCEEEEEEETTTEEEEEEECTTC
T ss_pred ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC-CEEEEEEEECCCC----CEEEEEEeCCCCceEEEEEcCCC
Confidence 8876 9999998775 33333333 3568899999998 5554322 344454444
Q ss_pred CeEEEEecCCcceEE-EEeccceEEeec---cCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccC--CCceE
Q 001202 383 YRLYAIEEGSSERVL-IFSFGKCCLNRG---VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ--NWPVQ 456 (1124)
Q Consensus 383 ~~l~~~~~~~~~~v~-~~s~~k~~~s~s---~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~--~~~I~ 456 (1124)
+++............ .++.++.++..+ .++.+..|++..+.. ..| ..+..+ ...|.
T Consensus 262 ~~~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~------------~~~------~~l~~~~~~~~l~ 323 (695)
T 2bkl_A 262 KDFRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPAR------------ASW------KEIVPEDSSASLL 323 (695)
T ss_dssp SSCEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSG------------GGC------EEEECCCSSCEEE
T ss_pred CceEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCc------------cCC------eEEecCCCCCeEE
Confidence 433322222111111 112244222222 123344444322211 011 122222 45688
Q ss_pred EEEEccCCCEEEEEcCCCeE-EEEcC-CCc-EEEecCcCceeeeEEEEEEec--CCEEEEEEEecCCCeEEEEEeeCC
Q 001202 457 HVAASKDGMFLAVAGLHGLI-LYDIR-QKK-WRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 457 ~va~SpdG~~lAvag~dG~v-lwd~~-sg~-wk~f~~~~~e~~~~v~gl~W~--~~~liv~~~~~~~~~~elrly~~~ 529 (1124)
.++++ +++.++++..||.. +|.+. +++ .+.+. ..+ ...+.++.+. ++.+++... ......++.+|+..
T Consensus 324 ~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~--~~~-~~~v~~~~~s~d~~~l~~~~s-s~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 324 SVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ--LPG-VGAASNLMGLEDLDDAYYVFT-SFTTPRQIYKTSVS 396 (695)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECC--CSS-SSEECCCBSCTTCSEEEEEEE-ETTEEEEEEEEETT
T ss_pred EEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec--CCC-CeEEEEeecCCCCCEEEEEEc-CCCCCCEEEEEECC
Confidence 88998 78888999999988 77654 232 22221 111 1234455564 334444332 22334567778763
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.93 E-value=1.6e-06 Score=105.49 Aligned_cols=240 Identities=8% Similarity=0.043 Sum_probs=130.1
Q ss_pred EeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEee--ecCcee
Q 001202 27 FKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQ--ITEKSI 103 (1124)
Q Consensus 27 fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~--~~~~~~ 103 (1124)
.++.+.++++.. +++|.++|.. ....+.... . ......+.|||||+++.+++.+|.|.+||+. +...
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~-t~~v~~~i~-~------g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-- 232 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGS-TYEIKTVLD-T------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-- 232 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETT-TCCEEEEEE-C------SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE--
T ss_pred cCCCceEEEEeCCCCeEEEEECC-CCeEEEEEe-C------CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE--
Confidence 345566666655 4689999996 554444432 1 1123478999999999999999999999984 2210
Q ss_pred ecCCCCCCCcceeeEEEEeeeeeecccccceEEEEe----ecCCeEEEEec-CCcEEEEeccCcccccee-eccCCCCcc
Q 001202 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV----SDNKHMLLGLS-DGSLYSISWKGEFYGAFE-LVHSSNDSS 177 (1124)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~----~d~~~llv~t~-dg~v~~~~Wd~~~~~~~~-l~~~~~~~~ 177 (1124)
+ .++... ....-.+++ +|++.++++.. ++.+.++ |..+..... +.
T Consensus 233 -----------v--------~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi--D~~t~~~~~~i~------- 283 (567)
T 1qks_A 233 -----------V--------AEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIM--DGETLEPKKIQS------- 283 (567)
T ss_dssp -----------E--------EEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEE--ETTTCCEEEEEE-------
T ss_pred -----------e--------EEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEE--ECCCCcEEEEEe-------
Confidence 0 011111 111123455 47888888774 5777765 443322211 00
Q ss_pred ccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEe-cCCceEeeecccccee---
Q 001202 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKIDKE--- 253 (1124)
Q Consensus 178 ~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~-~d~~i~~wd~~~~~~~--- 253 (1124)
+.. ...+.+ -......+..+..++. +..++... .++.+.++|....+..
T Consensus 284 -~~~--~~~~~~--------------~~~p~~rva~i~~s~~----------~~~~vv~~~~~g~v~~vd~~~~~~~~v~ 336 (567)
T 1qks_A 284 -TRG--MTYDEQ--------------EYHPEPRVAAILASHY----------RPEFIVNVKETGKILLVDYTDLNNLKTT 336 (567)
T ss_dssp -CCE--ECTTTC--------------CEESCCCEEEEEECSS----------SSEEEEEETTTTEEEEEETTCSSEEEEE
T ss_pred -ccc--cccccc--------------cccCCCceEEEEEcCC----------CCEEEEEecCCCeEEEEecCCCccceee
Confidence 000 000000 0001123444444433 32222222 2333444443221100
Q ss_pred -cCCCCeE-EEEEccCCCEEEEEe-cCCeEEEEEcCCCCceeEEEee-ccCCCCCCCCCCeEEEEECCCCC-EEEEEE-C
Q 001202 254 -LGSGDAV-CASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSL-YDWGYSMDDTGPVSCIAWTPDNS-AFAVGW-K 327 (1124)
Q Consensus 254 -~gh~~~v-~va~spdg~lLAsGs-~DgtV~vwd~~~~~~~~~~l~~-~~~g~~~~h~g~V~~lawSPDG~-~Lasgs-~ 327 (1124)
.+..... .+.|+|+|+++.+++ .+++|.++|..+ ++....+.. ...+ |.|.-..+ ++|++. ..+++. .
T Consensus 337 ~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t-~kl~~~i~vgg~~P----hpg~g~~~-~~p~~g~v~~t~~~g 410 (567)
T 1qks_A 337 EISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE-GKLVAIEDTGGQTP----HPGRGANF-VHPTFGPVWATSHMG 410 (567)
T ss_dssp EEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSSB----CCTTCEEE-EETTTEEEEEEEBSS
T ss_pred eeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC-CcEEEEEeccCcCC----CCccceee-ECCCCCcEEEeCCCC
Confidence 1122334 789999999877665 578999999998 777766654 2222 65533332 588855 444543 4
Q ss_pred CCcEEEEEcCC
Q 001202 328 SRGLTVWSVSG 338 (1124)
Q Consensus 328 Dg~I~vWdv~~ 338 (1124)
+++|.|++...
T Consensus 411 ~~~Vsvid~~~ 421 (567)
T 1qks_A 411 DDSVALIGTDP 421 (567)
T ss_dssp SSEEEEEECCT
T ss_pred CCeEEEecCCC
Confidence 68999999976
No 187
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.92 E-value=1.2e-07 Score=103.14 Aligned_cols=226 Identities=5% Similarity=-0.070 Sum_probs=135.9
Q ss_pred EEEEecCCcEEE-EEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEee
Q 001202 223 LFVLYSNGQLMS-CSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1124)
Q Consensus 223 ~~~~s~dG~~~~-~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~ 297 (1124)
.++++++|++++ +...++.+..|+..+.... ..+.... +++++++|+++++.. ++.|.+|+.+. .. ...+..
T Consensus 28 ~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~-~~-~~~~~~ 104 (270)
T 1rwi_B 28 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS-NN-QTVLPF 104 (270)
T ss_dssp EEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTC-SC-CEECCC
T ss_pred ceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCC-ce-Eeeeec
Confidence 455667888777 5456677777775443221 1222334 899999999777666 88999999765 32 222220
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---e
Q 001202 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~ 374 (1124)
+ ....+..++++|+|+.+++...++.|.+|+..+.......... .....+++++|++ ..+++.. .
T Consensus 105 ---~----~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g----~l~v~~~~~~~ 172 (270)
T 1rwi_B 105 ---D----GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-LNDPDGVAVDNSG----NVYVTDTDNNR 172 (270)
T ss_dssp ---C----SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCS-CCSCCCEEECTTC----CEEEEEGGGTE
T ss_pred ---C----CcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecccc-CCCceeEEEeCCC----CEEEEECCCCE
Confidence 1 2356899999999998888777889999987654432222121 3457788898887 6655532 7
Q ss_pred EEEEeCCCCeEEEEecCCcceE--EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccC
Q 001202 375 MMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (1124)
Q Consensus 375 i~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~ 451 (1124)
+..|+..+.........+.... ++++. +...++...++.+..++...... ......+
T Consensus 173 i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~--------------------~~~~~~~ 232 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS--------------------TVLPFTG 232 (270)
T ss_dssp EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC--------------------EECCCCS
T ss_pred EEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc--------------------eeeccCC
Confidence 8889888766544322221222 33333 33333433444444444211110 0001122
Q ss_pred CCceEEEEEccCCCEEEEEcCCCeE-EEEcCCC
Q 001202 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (1124)
Q Consensus 452 ~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg 483 (1124)
-..+..++++|+|+.+++...++.| +|+....
T Consensus 233 ~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 233 LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred CCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 2457889999999988888889999 8887543
No 188
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.89 E-value=5e-07 Score=101.71 Aligned_cols=147 Identities=10% Similarity=0.053 Sum_probs=99.6
Q ss_pred eEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecC----CeEEEEEcCCCCceeE
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRR----GVVELYDLAESASLIR 293 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~D----gtV~vwd~~~~~~~~~ 293 (1124)
..+++++||++++++..++.+..|+..+++.. ..+...+ +++++|+|++++++..+ +.|.+|+.++ +....
T Consensus 48 ~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~-~~~~~ 126 (333)
T 2dg1_A 48 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG-DNLQD 126 (333)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-CSCEE
T ss_pred cCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC-CEEEE
Confidence 45666799998888888888999987665432 2455566 99999999988887776 6899999876 44332
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC------CCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcc
Q 001202 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE 367 (1124)
Q Consensus 294 ~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~------Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~ 367 (1124)
.+. ... +...+.+++++|||+.+++... .+.|..++..+++......+ ...+..++++|++ +
T Consensus 127 ~~~--~~~----~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~dg----~ 194 (333)
T 2dg1_A 127 IIE--DLS----TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDE----K 194 (333)
T ss_dssp EEC--SSS----SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTS----S
T ss_pred EEc--cCc----cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CCcccceEECCCC----C
Confidence 222 001 3456899999999998887664 24566666665544332222 2357788999987 5
Q ss_pred eE-EEee---eEEEEeCC
Q 001202 368 PL-MSGT---SMMQWDEY 381 (1124)
Q Consensus 368 ~l-~sg~---~i~~W~~~ 381 (1124)
.+ ++.. .+..|+..
T Consensus 195 ~l~v~~~~~~~i~~~d~~ 212 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALE 212 (333)
T ss_dssp EEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCCCeEEEEEec
Confidence 33 3322 67788874
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.82 E-value=7.8e-07 Score=98.21 Aligned_cols=211 Identities=9% Similarity=0.009 Sum_probs=132.9
Q ss_pred cCCcEEEEEecCCceEeeecccccee---cCCC-CeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCC
Q 001202 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSG-DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (1124)
Q Consensus 228 ~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~-~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~ 302 (1124)
..|+++++++.++.+.+||..+++.. ..+. ..+ +++++|+|++++ +.++.|..||. + ++.+..+.. +
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~-G~~~W~~~~---~- 74 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D-GRELWNIAA---P- 74 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T-SCEEEEEEC---C-
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C-CCEEEEEcC---C-
Confidence 45778888888888888887677643 2232 245 899999999998 45788999998 5 777777662 1
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEEC-CCcEEEEEcCCCeeeEEeccC-----CcCceeeeEEcCCCCCCcceEEEee---
Q 001202 303 SMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSGCRLMSTIRQI-----SLSSISSPIVKPNQDCKYEPLMSGT--- 373 (1124)
Q Consensus 303 ~~~h~g~V~~lawSPDG~~Lasgs~-Dg~I~vWdv~~~~l~~tl~~h-----~~~~V~s~~~sp~~~~~~~~l~sg~--- 373 (1124)
+...+.++.+.|||+.+++.+. ++.+..++..+ +.+.++... .......+++.+++ +.+++..
T Consensus 75 ---~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~G-k~l~~~~~~~~~~~~~~~~~~v~~~~~G----~~lv~~~~~~ 146 (276)
T 3no2_A 75 ---AGCEMQTARILPDGNALVAWCGHPSTILEVNMKG-EVLSKTEFETGIERPHAQFRQINKNKKG----NYLVPLFATS 146 (276)
T ss_dssp ---TTCEEEEEEECTTSCEEEEEESTTEEEEEECTTS-CEEEEEEECCSCSSGGGSCSCCEECTTS----CEEEEETTTT
T ss_pred ---CCccccccEECCCCCEEEEecCCCCEEEEEeCCC-CEEEEEeccCCCCcccccccCceECCCC----CEEEEecCCC
Confidence 2346889999999999999887 77788888754 455554311 01233445667777 7777643
Q ss_pred eEEEEeCCCCeEEEEecCCcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecc--cceeecc
Q 001202 374 SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN--LPVSYIS 450 (1124)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~--~p~~~~~ 450 (1124)
.+..|++++..+|....+....-..... ++.+++++.++.+..++..+++ ..|+.-. ++. .
T Consensus 147 ~v~~~d~~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~-------------~~w~~~~~~~~~---~ 210 (276)
T 3no2_A 147 EVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR-------------IVRRVNANDIEG---V 210 (276)
T ss_dssp EEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCC-------------EEEEEEGGGSBS---C
T ss_pred EEEEECCCCCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc-------------EEEEecCCCCCC---c
Confidence 8899999965555554321111122223 5666666555555554433232 2343211 110 0
Q ss_pred CCCceEEEEEccCCCEEEEE
Q 001202 451 QNWPVQHVAASKDGMFLAVA 470 (1124)
Q Consensus 451 ~~~~I~~va~SpdG~~lAva 470 (1124)
.-.-+..++..++|+.+++.
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEE
T ss_pred cccccccceEcCCCCEEEEe
Confidence 11236778888899888877
No 190
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.82 E-value=5.2e-07 Score=114.04 Aligned_cols=149 Identities=13% Similarity=0.063 Sum_probs=93.5
Q ss_pred EEEEecCCcEEEEEecCC-----ceEeeecccc--c---eecCCCCeE-EEEEccCCCEEEEEecC----CeEEEEEcCC
Q 001202 223 LFVLYSNGQLMSCSVSKK-----GLKLAEFIKI--D---KELGSGDAV-CASIAPEQQILAVGTRR----GVVELYDLAE 287 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~-----~i~~wd~~~~--~---~~~gh~~~v-~va~spdg~lLAsGs~D----gtV~vwd~~~ 287 (1124)
.+.+++||+.++..+.+. .+.+|+..++ + .+..+.+.. .. ++|+|+.|+..+.+ +.|.+|++++
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 445668888777666433 6777776544 2 234444444 33 45999998888763 4599999876
Q ss_pred CCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcC-CCeeeEEeccCCcCceeeeEEcCCCCCCc
Q 001202 288 SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKPNQDCKY 366 (1124)
Q Consensus 288 ~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~-~~~l~~tl~~h~~~~V~s~~~sp~~~~~~ 366 (1124)
.......+. . ++.+.+..++|+ ++..+++...|+..+||.+. .+.....+..++...+..+.++|++
T Consensus 351 ~~~~~~~l~----~---~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~---- 418 (741)
T 1yr2_A 351 STPRFDTVV----P---ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGD---- 418 (741)
T ss_dssp SSCEEEEEE----C---CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTC----
T ss_pred CccccEEEe----c---CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCC----
Confidence 212233332 1 145567788888 67788888999988888654 3444555654334567888888876
Q ss_pred ceEE-Ee------eeEEEEeCCCCe
Q 001202 367 EPLM-SG------TSMMQWDEYGYR 384 (1124)
Q Consensus 367 ~~l~-sg------~~i~~W~~~~~~ 384 (1124)
..+. +. .++..|+..+++
T Consensus 419 ~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 419 RHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp SCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CEEEEEEcCCCCCCEEEEEECCCCc
Confidence 3222 11 166777777665
No 191
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.80 E-value=1.1e-05 Score=88.48 Aligned_cols=251 Identities=8% Similarity=-0.012 Sum_probs=145.1
Q ss_pred EEEEecCCcEEEEEecCCceEeeecccccee----cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEee
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~----~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~ 297 (1124)
.+++.++|+++++...++.+..++.. ++.. ..+...+ +++++++|.+.++...++.|..|+.+ ++ ...+..
T Consensus 19 ~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~-~~~~~~ 94 (299)
T 2z2n_A 19 GITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK--GI-IKEYTL 94 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SC-EEEEEC
T ss_pred ceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC--Cc-EEEEeC
Confidence 44455778877766656677777655 3221 1233445 99999999988887778999999875 22 233331
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---e
Q 001202 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~ 374 (1124)
. .....+.++++.|+|+..++...++.|.+|+..+......+... ...+..+++.+++ ..+++.. .
T Consensus 95 ~------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~-~~~~~~i~~~~~g----~l~v~~~~~~~ 163 (299)
T 2z2n_A 95 P------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNK-GSYPSFITLGSDN----ALWFTENQNNA 163 (299)
T ss_dssp S------STTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSST-TCCEEEEEECTTS----CEEEEETTTTE
T ss_pred C------CcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCC-CCCCceEEEcCCC----CEEEEeCCCCE
Confidence 1 13456899999999998888877889999999443322222222 3467888888887 6665432 6
Q ss_pred EEEEeCCCCeEEEE-ecCCcceE--EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeecc
Q 001202 375 MMQWDEYGYRLYAI-EEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (1124)
Q Consensus 375 i~~W~~~~~~l~~~-~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~ 450 (1124)
+..|+. ++++... .......+ +.++. ++..++...++.+..++. .+.. .... ...
T Consensus 164 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~---------------~~~~----~~~ 222 (299)
T 2z2n_A 164 IGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI---------------TEFK----IPT 222 (299)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE---------------EEEE----CSS
T ss_pred EEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE---------------EEEE----CCC
Confidence 777887 4444332 22222222 22222 333333333334444332 1111 0111 112
Q ss_pred CCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEecCCEEEEE
Q 001202 451 QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVC 512 (1124)
Q Consensus 451 ~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~ 512 (1124)
+...+..++++++|+..++...++.+ .||. +++...+...... ..+.++.+.++.+.++
T Consensus 223 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~--~~~~~i~~~~g~l~v~ 282 (299)
T 2z2n_A 223 PNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKS--AEPHGICFDGETIWFA 282 (299)
T ss_dssp TTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSS--CCEEEEEECSSCEEEE
T ss_pred CCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCC--CccceEEecCCCEEEE
Confidence 34567899999999977666566777 9998 5655544322111 2245555544455554
No 192
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.80 E-value=2.4e-06 Score=98.60 Aligned_cols=75 Identities=11% Similarity=-0.021 Sum_probs=59.9
Q ss_pred EEEEccCCCEEEEEec----------CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCC-EEEEEE-CC
Q 001202 261 CASIAPEQQILAVGTR----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGW-KS 328 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~----------DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~-~Lasgs-~D 328 (1124)
.++++|+++.+.++.. +++|.++|..+ .+.+.++.. .+...+++|+|||+ .++++. .+
T Consensus 271 ~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~---------g~~p~~i~~s~Dg~~~l~v~~~~~ 340 (373)
T 2mad_H 271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISL---------GHDVDAISVAQDGGPDLYALSAGT 340 (373)
T ss_pred eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEEC---------CCCcCeEEECCCCCeEEEEEcCCC
Confidence 4789999887776553 35899999987 777777762 23478999999999 788877 58
Q ss_pred CcEEEEEcCCCeeeEEe
Q 001202 329 RGLTVWSVSGCRLMSTI 345 (1124)
Q Consensus 329 g~I~vWdv~~~~l~~tl 345 (1124)
+.|.|+|+.+++.+.++
T Consensus 341 ~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 341 EVLHIYDAGAGDQDQST 357 (373)
T ss_pred CeEEEEECCCCCEEeee
Confidence 99999999999988774
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.76 E-value=2.2e-05 Score=86.02 Aligned_cols=224 Identities=6% Similarity=-0.059 Sum_probs=128.5
Q ss_pred EEEecCCcEEEEEecCCceEeeeccccc-ee--cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeecc
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID-KE--LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~-~~--~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~ 299 (1124)
+++.++|+++++...++.+..++..... .. ......+ +++++|++++.++...++.|.+|+. + +... .+...
T Consensus 62 i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~-g~~~-~~~~~- 137 (299)
T 2z2n_A 62 LTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-D-GKIR-EYELP- 137 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CCEE-EEECS-
T ss_pred EEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-C-CCEE-EecCC-
Confidence 3444667766665555556666543111 11 1123345 9999999998888878899999987 3 3322 22211
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEE-eccCCcCceeeeEEcCCCCCCcceEEEe---eeE
Q 001202 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST-IRQISLSSISSPIVKPNQDCKYEPLMSG---TSM 375 (1124)
Q Consensus 300 ~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~t-l~~h~~~~V~s~~~sp~~~~~~~~l~sg---~~i 375 (1124)
.+...+.+++++|+|+..++...++.|.+|+. ++..... +... ...+.++++.+++ ..+++. ..+
T Consensus 138 -----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g----~l~v~~~~~~~i 206 (299)
T 2z2n_A 138 -----NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTP-ASGPVGITKGNDD----ALWFVEIIGNKI 206 (299)
T ss_dssp -----STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECTTS----SEEEEETTTTEE
T ss_pred -----CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCC-CCcceeEEECCCC----CEEEEccCCceE
Confidence 13456899999999998888777889999999 5544332 2222 3457788898887 555543 267
Q ss_pred EEEeCCCCeEEEE-ecCCcceEEE--Eec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccC
Q 001202 376 MQWDEYGYRLYAI-EEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (1124)
Q Consensus 376 ~~W~~~~~~l~~~-~~~~~~~v~~--~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~ 451 (1124)
..|+. +++.... ...+...+.. ++. ++..++...++.+..++. .+ .+ ..... ..+
T Consensus 207 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g--~~-------------~~~~~----~~~ 265 (299)
T 2z2n_A 207 GRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NN--II-------------EEYPI----QIK 265 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TT--EE-------------EEEEC----SSS
T ss_pred EEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CC--ce-------------EEEeC----CCC
Confidence 78888 4443322 2222233322 222 333333223344444432 11 10 01111 123
Q ss_pred CCceEEEEEccCCCEEEEEcCCCeEEEEcCCCc
Q 001202 452 NWPVQHVAASKDGMFLAVAGLHGLILYDIRQKK 484 (1124)
Q Consensus 452 ~~~I~~va~SpdG~~lAvag~dG~vlwd~~sg~ 484 (1124)
...+.++++ ++|+..++.+.+|...++..+++
T Consensus 266 ~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 266 SAEPHGICF-DGETIWFAMECDKIGKLTLIKDN 297 (299)
T ss_dssp SCCEEEEEE-CSSCEEEEETTTEEEEEEEC---
T ss_pred CCccceEEe-cCCCEEEEecCCcEEEEEcCccc
Confidence 346788999 99988777665555588877653
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.74 E-value=1.2e-06 Score=96.73 Aligned_cols=181 Identities=11% Similarity=0.057 Sum_probs=124.9
Q ss_pred cCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCC-CCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEE
Q 001202 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT-GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST 344 (1124)
Q Consensus 266 pdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~-g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~t 344 (1124)
..+++|++++.|+.|.+||.++ ++.+.++. . +. ..+.++.++|||+.++ +.++.|..||. +++.+.+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~t-G~~~w~~~----~----~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~ 70 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDT-KEIVWEYP----L----EKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWN 70 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTT-TEEEEEEE----C----CTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEE
T ss_pred CCCcEEEeeCCCCEEEEEECCC-CeEEEEeC----C----CccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEE
Confidence 3468899999999999999877 88777776 2 33 3588999999999998 34678999999 6778888
Q ss_pred eccCCcCceeeeEEcCCCCCCcceEEEee----eEEEEeCCCCeEEEEecC-----CcceE--EEEec-cceEEeeccCC
Q 001202 345 IRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEG-----SSERV--LIFSF-GKCCLNRGVSG 412 (1124)
Q Consensus 345 l~~h~~~~V~s~~~sp~~~~~~~~l~sg~----~i~~W~~~~~~l~~~~~~-----~~~~v--~~~s~-~k~~~s~s~d~ 412 (1124)
+..+....+.++.+.|++ +.+++.. .+..+++++..++..... +.... ..... ++.+++...++
T Consensus 71 ~~~~~~~~~~~~~~~~dG----~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~ 146 (276)
T 3no2_A 71 IAAPAGCEMQTARILPDG----NALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS 146 (276)
T ss_dssp EECCTTCEEEEEEECTTS----CEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred EcCCCCccccccEECCCC----CEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC
Confidence 876433468888899998 7776532 566677766555543311 10111 22233 66667776677
Q ss_pred ceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc
Q 001202 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 413 ~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~ 484 (1124)
.+..++.. |+. .|. +.... ...++.+.++|+.+++++.++.+ .+|..+|+
T Consensus 147 ~v~~~d~~-G~~-------------~w~-------~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 147 EVREIAPN-GQL-------------LNS-------VKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp EEEEECTT-SCE-------------EEE-------EECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred EEEEECCC-CCE-------------EEE-------EECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence 77766643 332 232 22222 23457888999999998888888 99999776
No 195
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.74 E-value=5.2e-06 Score=100.99 Aligned_cols=109 Identities=15% Similarity=0.121 Sum_probs=82.4
Q ss_pred cCCcEEEEEecCCceEeeecccccee--cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcC--CCCceeEEEeeccCCC
Q 001202 228 SNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLA--ESASLIRTVSLYDWGY 302 (1124)
Q Consensus 228 ~dG~~~~~~~~d~~i~~wd~~~~~~~--~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~--~~~~~~~~l~~~~~g~ 302 (1124)
+++.++++...++++.++|..+.+.. ....... +++|||||+++.+++.||.|.+||+. + .+.+.++.. |
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t-~~~v~~i~~---G- 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE-PTTVAEIKI---G- 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS-CCEEEEEEC---C-
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCC-CcEeEEEec---C-
Confidence 44556666677888888888776543 2223345 89999999999999999999999995 4 566666651 1
Q ss_pred CCCCCCCeEEEEEC----CCCCEEEEEEC-CCcEEEEEcCCCeeeEEec
Q 001202 303 SMDDTGPVSCIAWT----PDNSAFAVGWK-SRGLTVWSVSGCRLMSTIR 346 (1124)
Q Consensus 303 ~~~h~g~V~~lawS----PDG~~Lasgs~-Dg~I~vWdv~~~~l~~tl~ 346 (1124)
.....++|| |||++++++.+ ++++.|+|..+.+.+.++.
T Consensus 240 -----~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~ 283 (567)
T 1qks_A 240 -----SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 283 (567)
T ss_dssp -----SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred -----CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence 225789999 79998877765 4999999999888877764
No 196
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.74 E-value=2.6e-06 Score=94.29 Aligned_cols=196 Identities=11% Similarity=0.025 Sum_probs=125.3
Q ss_pred CeE-EEEEccCCC-EEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEE
Q 001202 258 DAV-CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1124)
Q Consensus 258 ~~v-~va~spdg~-lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWd 335 (1124)
... +++|+|+++ +++++..++.|..|+.+. + ...+. . +.+.+.+++++|||+.+++...+++|.+||
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~-~--~~~~~----~----~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG-Q--LSPEM----H----PSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS-C--EEEEE----S----SCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCC-C--eEEEE----C----CCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 344 899999998 888999999999999876 4 44444 2 567799999999999888887788999999
Q ss_pred cCCCeeeEEecc---CCcCceeeeEEcCCCCCCcceEEE----ee----------------eEEEEeCCCCeEEEEecCC
Q 001202 336 VSGCRLMSTIRQ---ISLSSISSPIVKPNQDCKYEPLMS----GT----------------SMMQWDEYGYRLYAIEEGS 392 (1124)
Q Consensus 336 v~~~~l~~tl~~---h~~~~V~s~~~sp~~~~~~~~l~s----g~----------------~i~~W~~~~~~l~~~~~~~ 392 (1124)
..+++....... .....+..++++|++ ..+++ |. .+..++.. +++.....+
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G----~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~- 170 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPDG----SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD- 170 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTTS----CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC-
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCCC----CEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC-
Confidence 976664333221 112346778999988 77775 22 34445554 443333222
Q ss_pred cceE--EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEE
Q 001202 393 SERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAV 469 (1124)
Q Consensus 393 ~~~v--~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAv 469 (1124)
.... +++++ ++.+++.+.++.+..|++..... +. . . ...+..+...+..++++++|+..++
T Consensus 171 ~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~-~~-~-----------~---~~~~~~~~~~p~~i~~d~~G~l~v~ 234 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE-TE-Y-----------Q---GVHFTVEPGKTDGLRVDAGGLIWAS 234 (296)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC-EE-E-----------E---EEEECCSSSCCCSEEEBTTSCEEEE
T ss_pred CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc-Cc-C-----------C---CeEeeCCCCCCCeEEECCCCCEEEE
Confidence 2222 55666 66666666677777777652111 00 0 0 0011113334567999999996665
Q ss_pred EcCCCeE-EEEcCCCcEEEe
Q 001202 470 AGLHGLI-LYDIRQKKWRVF 488 (1124)
Q Consensus 470 ag~dG~v-lwd~~sg~wk~f 488 (1124)
. ++.+ +||........+
T Consensus 235 ~--~~~v~~~~~~g~~~~~~ 252 (296)
T 3e5z_A 235 A--GDGVHVLTPDGDELGRV 252 (296)
T ss_dssp E--TTEEEEECTTSCEEEEE
T ss_pred c--CCeEEEECCCCCEEEEE
Confidence 5 5666 999875444444
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.72 E-value=1.5e-06 Score=94.41 Aligned_cols=129 Identities=6% Similarity=0.042 Sum_probs=84.5
Q ss_pred EEEecCCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeecc
Q 001202 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~ 299 (1124)
+++.++|+++++...++.+..++..+.... ....... +++++|+|++.++...++.|.+|+.+. ..... ..
T Consensus 113 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~-~~--- 187 (270)
T 1rwi_B 113 LAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES-NNQVV-LP--- 187 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT-CCEEE-CC---
T ss_pred eEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC-CceEe-ec---
Confidence 445577777776666667777754333221 1222233 899999999888888889999999875 33221 11
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 300 ~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
.. +...+.+++++|+|...++...++.|.+|+..+..... ....+...+.+++++|++
T Consensus 188 ~~----~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g 245 (270)
T 1rwi_B 188 FT----DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDR 245 (270)
T ss_dssp CS----SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTC
T ss_pred cc----CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCC
Confidence 01 33568999999999888888788999999998765332 221113456667776665
No 198
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.72 E-value=1.6e-06 Score=99.54 Aligned_cols=258 Identities=10% Similarity=0.072 Sum_probs=138.7
Q ss_pred EEEeeCCeEEEEEc-----------CCcEEEEecCCCceeEEEEeeChHHHhhhc-ceeEEEEecCCcEEEEEeC--CCe
Q 001202 25 IYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVTS--SLY 90 (1124)
Q Consensus 25 v~fS~dg~llA~~~-----------~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G-~~~~v~wSPDg~~Lav~t~--dg~ 90 (1124)
+.+||||+++.++. ++.|.+||.. ....++...-....-...| ....++|+|||+++.++.. ++.
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~-t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV-TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT-TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECC-CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 88999998654443 4679999996 6555555421110000011 1246999999999999874 688
Q ss_pred EEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEee-cCCeEEEEecCCcEEEEeccCccccceee
Q 001202 91 LHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHMLLGLSDGSLYSISWKGEFYGAFEL 169 (1124)
Q Consensus 91 l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-d~~~llv~t~dg~v~~~~Wd~~~~~~~~l 169 (1124)
|.++|+.+.+..- .+.+.+. .-+.+ ....++..+.||.+..+..........
T Consensus 162 VsVID~~t~~vv~---------------------tI~v~g~----~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-- 214 (386)
T 3sjl_D 162 VGVVDLEGKAFKR---------------------MLDVPDC----YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-- 214 (386)
T ss_dssp EEEEETTTTEEEE---------------------EEECCSE----EEEEEEETTEEEEEETTSCEEEEECCSSSCCEE--
T ss_pred EEEEECCCCcEEE---------------------EEECCCc----ceeecCCCceeEEECCCCCEEEEECCCCCeEEE--
Confidence 9999987643110 1111110 01112 223445555666655544322100000
Q ss_pred ccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEe---ee
Q 001202 170 VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL---AE 246 (1124)
Q Consensus 170 ~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~---wd 246 (1124)
.+...|.++.. .... ..+|.+..+..++++.+|++++.......+++ |+
T Consensus 215 ---------~~~~~~~~~~~-------------~~~~------~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~ 266 (386)
T 3sjl_D 215 ---------THTEVFHPEDE-------------FLIN------HPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVE 266 (386)
T ss_dssp ---------EECCCCSCTTS-------------CBCS------CCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEE
T ss_pred ---------eecceeccccc-------------cccc------cceeEcCCCcEEEEeCCCEEEEEECCCCcceeeccee
Confidence 00001111110 0000 11232222233344555665555443333222 22
Q ss_pred cccc-ceecC-CCCeE-EEEEccCCCEEEEEec----------CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEE
Q 001202 247 FIKI-DKELG-SGDAV-CASIAPEQQILAVGTR----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI 313 (1124)
Q Consensus 247 ~~~~-~~~~g-h~~~v-~va~spdg~lLAsGs~----------DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~l 313 (1124)
.... ....+ .-+.. .++++|+++.+.+... ..+|.+.|+.+ .+.++++.+. .++..|
T Consensus 267 ~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~vg---------~~~~~l 336 (386)
T 3sjl_D 267 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMG---------HEIDSI 336 (386)
T ss_dssp SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEE---------EEECEE
T ss_pred ccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEECC---------CCcceE
Confidence 1110 00001 01112 4777999887777643 25788999988 7777777642 247899
Q ss_pred EECCCCC-EEEEE-ECCCcEEEEEcCCCeeeEEeccC
Q 001202 314 AWTPDNS-AFAVG-WKSRGLTVWSVSGCRLMSTIRQI 348 (1124)
Q Consensus 314 awSPDG~-~Lasg-s~Dg~I~vWdv~~~~l~~tl~~h 348 (1124)
++||||+ +|.++ +.+++|.|+|..+++.+.++...
T Consensus 337 avs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 337 NVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp EECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred EECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 9999997 66665 55899999999999999988763
No 199
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.65 E-value=1.7e-05 Score=89.60 Aligned_cols=252 Identities=11% Similarity=-0.009 Sum_probs=144.5
Q ss_pred CCceEeeeccccceec---------CCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCC
Q 001202 239 KKGLKLAEFIKIDKEL---------GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG 308 (1124)
Q Consensus 239 d~~i~~wd~~~~~~~~---------gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g 308 (1124)
++++..+|..+++... ...+.. .+++. ++++.++...+++|.+||..+ ++.+.++. ...
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t-~~~~~~i~---------~~~ 84 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINT-FKEVGRIT---------GFT 84 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTT-CCEEEEEE---------CCS
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcc-cEEEEEcC---------CCC
Confidence 5566666665543221 122333 67764 456677777789999999988 77777775 335
Q ss_pred CeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCc----CceeeeEEcCCCCCCcceEEEe----eeEEEEeC
Q 001202 309 PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL----SSISSPIVKPNQDCKYEPLMSG----TSMMQWDE 380 (1124)
Q Consensus 309 ~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~----~~V~s~~~sp~~~~~~~~l~sg----~~i~~W~~ 380 (1124)
....++++|||+..++...++.|.+||..+++...++..... .....+++ .++ ..+++. .++.+|++
T Consensus 85 ~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~----~lyv~~~~~~~~v~viD~ 159 (328)
T 3dsm_A 85 SPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK----YVYVNCWSYQNRILKIDT 159 (328)
T ss_dssp SEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT----EEEEEECTTCCEEEEEET
T ss_pred CCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC----EEEEEcCCCCCEEEEEEC
Confidence 578999999996555554789999999999988777654310 13445555 232 444442 26778888
Q ss_pred CCCeEEEEecCCcc-eEEEEec-cceEEeeccC----------CceeeeEeeecCCeEEEeecCCCccceeeecccceee
Q 001202 381 YGYRLYAIEEGSSE-RVLIFSF-GKCCLNRGVS----------GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 448 (1124)
Q Consensus 381 ~~~~l~~~~~~~~~-~v~~~s~-~k~~~s~s~d----------~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~ 448 (1124)
.++++......... .-+.+++ ++..++...+ +.+..++...+. +...+
T Consensus 160 ~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--------------------v~~~~ 219 (328)
T 3dsm_A 160 ETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT--------------------VEKQF 219 (328)
T ss_dssp TTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE--------------------EEEEE
T ss_pred CCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe--------------------EEEEE
Confidence 88776654432111 1133344 4433333222 233333321111 01111
Q ss_pred c-cCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEec--CCEEEEEEEecCCCeEEEE
Q 001202 449 I-SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELL 524 (1124)
Q Consensus 449 ~-~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~--~~~liv~~~~~~~~~~elr 524 (1124)
. ........++++|||+++.++.. .+ +||..+++......... ......++++. ++.+.+++..+-.....|.
T Consensus 220 ~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~-~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~ 296 (328)
T 3dsm_A 220 KFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEF-RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVY 296 (328)
T ss_dssp ECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCC-CSSCEEEEEECTTTCCEEEEECTTSSSEEEEE
T ss_pred ecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecC-CCCceEEEEEcCCCCeEEEEcccccccCCEEE
Confidence 1 11124678999999999998876 67 99998876421110000 01235577775 4566666421112345788
Q ss_pred EeeCC
Q 001202 525 FYPRY 529 (1124)
Q Consensus 525 ly~~~ 529 (1124)
+|+.+
T Consensus 297 v~d~~ 301 (328)
T 3dsm_A 297 RYSPQ 301 (328)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 88763
No 200
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.62 E-value=9.7e-06 Score=91.57 Aligned_cols=224 Identities=6% Similarity=0.013 Sum_probs=139.6
Q ss_pred cCCcEEEEEecCCceEeeecccccee---cCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCC
Q 001202 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (1124)
Q Consensus 228 ~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~ 304 (1124)
.+++++++...++.+.++|..+++.. .....+..+++++++++.++...++.|.+||..+ ++...++.... ..
T Consensus 52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t-~~~~~~i~~g~---~~ 127 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT-YEITGYIECPD---MD 127 (328)
T ss_dssp ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT-TEEEEEEECTT---CC
T ss_pred ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC-CeEEEEEEcCC---cc
Confidence 45667777777788888888776543 2334455899999997666665899999999987 66666665321 00
Q ss_pred CCCCCeEEEEECCCCCEEEEEE-CCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEe-----------
Q 001202 305 DDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG----------- 372 (1124)
Q Consensus 305 ~h~g~V~~lawSPDG~~Lasgs-~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg----------- 372 (1124)
++......+++ .+++.+++.+ .+++|.++|..+++...++... .....++++|++ +.+++.
T Consensus 128 ~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~dG----~l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 128 MESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLVMDKYN----KMWTITDGGYEGSPYGY 200 (328)
T ss_dssp TTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCCCEECTTS----EEEEEBCCBCTTCSSCB
T ss_pred ccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccceEEcCCC----CEEEEECCCccCCcccc
Confidence 11223456777 4555555554 4889999999999888887653 245678888887 555542
Q ss_pred --eeEEEEeCCCCeEEEEec---CCcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccce
Q 001202 373 --TSMMQWDEYGYRLYAIEE---GSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV 446 (1124)
Q Consensus 373 --~~i~~W~~~~~~l~~~~~---~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~ 446 (1124)
..+..+++.++++..... +....-+++++ ++.+...+. .+..++...+... ..
T Consensus 201 ~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~-------------------~~ 259 (328)
T 3dsm_A 201 EAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP-------------------VR 259 (328)
T ss_dssp CCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC-------------------SS
T ss_pred CCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee-------------------ee
Confidence 257788988888764432 21222356665 555544433 5555554332210 00
Q ss_pred eecc-CCCceEEEEEccC-CCEEEEE----cCCCeE-EEEcCCCc
Q 001202 447 SYIS-QNWPVQHVAASKD-GMFLAVA----GLHGLI-LYDIRQKK 484 (1124)
Q Consensus 447 ~~~~-~~~~I~~va~Spd-G~~lAva----g~dG~v-lwd~~sg~ 484 (1124)
.+.. .......++++|+ |+..++. ..+|.+ +||.. ++
T Consensus 260 ~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 260 PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 1111 1345678999995 5544554 467888 99987 54
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.59 E-value=9.4e-06 Score=90.06 Aligned_cols=227 Identities=8% Similarity=0.019 Sum_probs=123.4
Q ss_pred EEEEecCCcEEEE-------EecCCceEeeecccccee--c-----CCCCeE-EEEEccC-CCEEEEEecCCeEEEEEcC
Q 001202 223 LFVLYSNGQLMSC-------SVSKKGLKLAEFIKIDKE--L-----GSGDAV-CASIAPE-QQILAVGTRRGVVELYDLA 286 (1124)
Q Consensus 223 ~~~~s~dG~~~~~-------~~~d~~i~~wd~~~~~~~--~-----gh~~~v-~va~spd-g~lLAsGs~DgtV~vwd~~ 286 (1124)
.+++.++|+++++ ...++.+..|+..+++.. . ++...+ +++++++ ++++++.. ++.|.+|+.+
T Consensus 22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~ 100 (314)
T 1pjx_A 22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD 100 (314)
T ss_dssp EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETT
T ss_pred CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC
Confidence 4455578887777 566777888876554322 1 243445 9999999 77666554 4478888876
Q ss_pred CCCceeEEE-eeccCCCCCCCCCCeEEEEECCCCCEEEEEECC---------------CcEEEEEcCCCeeeEEeccCCc
Q 001202 287 ESASLIRTV-SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---------------RGLTVWSVSGCRLMSTIRQISL 350 (1124)
Q Consensus 287 ~~~~~~~~l-~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D---------------g~I~vWdv~~~~l~~tl~~h~~ 350 (1124)
++.. .+ .. .....+...+.+++++|+|+..++...+ +.|..|+.. +........ .
T Consensus 101 --g~~~-~~~~~---~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~ 171 (314)
T 1pjx_A 101 --GTFE-EIAKK---DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--F 171 (314)
T ss_dssp --SCEE-ECCSB---CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--E
T ss_pred --CCEE-EEEec---cCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--C
Confidence 3322 22 10 1000123458899999999988877665 567777766 443322222 2
Q ss_pred CceeeeEEc----CCCCCCcceE-EEee---eEEEEeCC-CCe-----EEEEecCCc-ceE--EEEec-cceEEeeccCC
Q 001202 351 SSISSPIVK----PNQDCKYEPL-MSGT---SMMQWDEY-GYR-----LYAIEEGSS-ERV--LIFSF-GKCCLNRGVSG 412 (1124)
Q Consensus 351 ~~V~s~~~s----p~~~~~~~~l-~sg~---~i~~W~~~-~~~-----l~~~~~~~~-~~v--~~~s~-~k~~~s~s~d~ 412 (1124)
.....++++ |++ +.+ ++.. .+..|+.. +++ .+....++. ... ++++. ++..++...++
T Consensus 172 ~~~~~i~~~~~~d~dg----~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRP----YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp SSEEEEEEEECTTSCE----EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred CCcceEEEecccCCCC----CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence 345677888 776 433 3321 56677754 333 222222211 112 22222 32222222233
Q ss_pred ceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEc-CCCeE-EEEcCCC
Q 001202 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDIRQK 483 (1124)
Q Consensus 413 ~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag-~dG~v-lwd~~sg 483 (1124)
.+..|+...+. ....+..+...+.+++|+|||++|.+++ .++.+ .|++.+.
T Consensus 248 ~i~~~d~~~g~--------------------~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 248 HIEVFGPDGGQ--------------------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEECTTCBS--------------------CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEEEcCCCCc--------------------EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 33333321111 1122223335688999999999666555 45666 8888654
No 202
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.56 E-value=1.6e-06 Score=99.92 Aligned_cols=119 Identities=17% Similarity=0.123 Sum_probs=79.7
Q ss_pred EEEEecCCcEEEEEecCCceEeeeccccc-------------eecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCC
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKID-------------KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES 288 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~-------------~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~ 288 (1124)
.+++++.+.++++++.+ .+.+|+..... ....+.+ + .++| |+++|++| .+|.|++||+.+
T Consensus 42 lLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~s- 115 (388)
T 1xip_A 42 NLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEE- 115 (388)
T ss_dssp CEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSS-
T ss_pred EEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchh-
Confidence 45556666666666655 34446543221 1234556 7 9999 99999999 899999999987
Q ss_pred CceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 289 ~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
........ . |..+|.++.+.+.. +|++..||++.+||+.++.... + ...|++++|||+|
T Consensus 116 l~~~~~~~----~----~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-~----~~~Vs~v~WSpkG 174 (388)
T 1xip_A 116 LSEFRTVT----S----FEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-L----AQNVTSFDVTNSQ 174 (388)
T ss_dssp TTCEEEEE----E----CSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-E----EESEEEEEECSSE
T ss_pred hhccCccc----e----eecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-c----cCCceEEEEcCCc
Confidence 33333333 2 56678898887653 9999999999999998776532 1 2345555555543
No 203
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.55 E-value=1.1e-06 Score=101.30 Aligned_cols=174 Identities=9% Similarity=0.020 Sum_probs=114.3
Q ss_pred eE-EEEEccCCCEEEEEecCCeEEEEEcCCCC----------ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC
Q 001202 259 AV-CASIAPEQQILAVGTRRGVVELYDLAESA----------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1124)
Q Consensus 259 ~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~----------~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~ 327 (1124)
.+ .+++++++.++++|+.|+ +++|++++.. +...... +.+ |+.|+| ||..|+++ .
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~---------lp~-V~~l~f--d~~~L~v~-~ 104 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE---------IPD-VIFVCF--HGDQVLVS-T 104 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE---------CTT-EEEEEE--ETTEEEEE-E
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee---------CCC-eeEEEE--CCCEEEEE-c
Confidence 45 899999999999999884 5569875411 0111222 556 999999 99999999 8
Q ss_pred CCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEe
Q 001202 328 SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLN 407 (1124)
Q Consensus 328 Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s 407 (1124)
+++|++||+.+.....++..+ ...+.+ ++ |. ...++.
T Consensus 105 ~~~l~v~dv~sl~~~~~~~~~-~~~v~~-------------------i~-~~----------------------~p~~av 141 (388)
T 1xip_A 105 RNALYSLDLEELSEFRTVTSF-EKPVFQ-------------------LK-NV----------------------NNTLVI 141 (388)
T ss_dssp SSEEEEEESSSTTCEEEEEEC-SSCEEE-------------------EE-EC----------------------SSEEEE
T ss_pred CCcEEEEEchhhhccCcccee-ecceee-------------------EE-ec----------------------CCCEEE
Confidence 899999999765433333222 111111 11 10 111456
Q ss_pred eccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcE-
Q 001202 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW- 485 (1124)
Q Consensus 408 ~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~w- 485 (1124)
+..||++.+|++..+... + +...|++++|||+| +++|..||.+ +|+..++..
T Consensus 142 ~~~dG~L~v~dl~~~~~~-------------------~-----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~ 195 (388)
T 1xip_A 142 LNSVNDLSALDLRTKSTK-------------------Q-----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEME 195 (388)
T ss_dssp EETTSEEEEEETTTCCEE-------------------E-----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEE
T ss_pred EECCCCEEEEEccCCccc-------------------c-----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcccc
Confidence 677889999987644331 1 22469999999999 7889999999 999988773
Q ss_pred --EEecCcC--ce---eeeEEEEEEecCCEEEEEEEe
Q 001202 486 --RVFGDIT--QE---QKIQSKGLLWLGKIIVVCNYI 515 (1124)
Q Consensus 486 --k~f~~~~--~e---~~~~v~gl~W~~~~liv~~~~ 515 (1124)
+.+.... +| .++.|.++.|..++..+..|.
T Consensus 196 ~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 196 KQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred ccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 3442111 11 247899999987655544453
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.53 E-value=3.3e-05 Score=85.61 Aligned_cols=107 Identities=7% Similarity=0.040 Sum_probs=73.2
Q ss_pred EEEEe----cCCcE-EEEEecCCceEeeecc-ccc-----ee---cCCC-CeE-EEEEccCCCEEEEEecCCeEEEEEcC
Q 001202 223 LFVLY----SNGQL-MSCSVSKKGLKLAEFI-KID-----KE---LGSG-DAV-CASIAPEQQILAVGTRRGVVELYDLA 286 (1124)
Q Consensus 223 ~~~~s----~dG~~-~~~~~~d~~i~~wd~~-~~~-----~~---~gh~-~~v-~va~spdg~lLAsGs~DgtV~vwd~~ 286 (1124)
.++++ +||+. +++...++.+..|+.. .++ .+ .++. ... .++++++|++.++...++.|.+|+.+
T Consensus 176 ~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence 34566 77754 4444456677777654 221 11 2332 445 89999999999888889999999987
Q ss_pred CCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEE-ECCCcEEEEEcCC
Q 001202 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSVSG 338 (1124)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasg-s~Dg~I~vWdv~~ 338 (1124)
+ ++....+. . +...+.+++|+|||+.|.++ ..++.|..|++..
T Consensus 256 ~-g~~~~~~~----~----~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 256 G-GQPKMRIR----C----PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp C-BSCSEEEE----C----SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred C-CcEeEEEe----C----CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 5 55555554 2 44678999999999955544 4568999999864
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.53 E-value=0.00012 Score=79.99 Aligned_cols=252 Identities=6% Similarity=-0.015 Sum_probs=140.0
Q ss_pred EEEEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCce
Q 001202 24 IIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (1124)
Q Consensus 24 iv~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~~ 102 (1124)
-++++++|+++++.. ++.|.+|+.. ... ..+... ........+++.|||+..++...++.|..|+.. +...
T Consensus 24 ~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~--~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 24 GITSSEDGKVWFTQHKANKISSLDQS-GRI--KEFEVP----TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCE--EEEECS----STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred eeeECCCCCEEEEcCCCCeEEEECCC-Cce--EEEECC----CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 367899999877764 5789999884 322 222111 122456789999999877766667888888765 2211
Q ss_pred eecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecC-CeEEEEec-CCcEEEEeccCccccceeeccCCCCccccc
Q 001202 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1124)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~~llv~t~-dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~ 180 (1124)
... .......+.+++.+. ..+.++.. ++.+..++.++. ...+
T Consensus 96 ~~~----------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~---~~~~----------- 139 (300)
T 2qc5_A 96 EYP----------------------LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGT---IYEY----------- 139 (300)
T ss_dssp EEE----------------------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSC---EEEE-----------
T ss_pred Eec----------------------CCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCC---EEEc-----------
Confidence 000 000112244444442 34555554 566665433211 1100
Q ss_pred cccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeecccccee----cCC
Q 001202 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGS 256 (1124)
Q Consensus 181 ~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~----~gh 256 (1124)
........+..+ ++.++|+++++...++.+..++. +++.. ..+
T Consensus 140 ----------------------~~~~~~~~~~~i----------~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~ 186 (300)
T 2qc5_A 140 ----------------------DLPNKGSYPAFI----------TLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTN 186 (300)
T ss_dssp ----------------------ECSSTTCCEEEE----------EECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred ----------------------cCCCCCCCceeE----------EECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCC
Confidence 000111223333 34466666555544555555554 22211 122
Q ss_pred CCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEE
Q 001202 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1124)
Q Consensus 257 ~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWd 335 (1124)
.... +++++++|.+.++...++.|.+|+. + +.... .... .+...+.+++++|+|+..++...++.|..++
T Consensus 187 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~-g~~~~-~~~~------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 187 AAAPVGITSGNDGALWFVEIMGNKIGRITT-T-GEISE-YDIP------TPNARPHAITAGKNSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp TCCEEEEEECTTSSEEEEETTTTEEEEECT-T-CCEEE-EECS------STTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred CCCcceEEECCCCCEEEEccCCCEEEEEcC-C-CcEEE-EECC------CCCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence 3334 9999999998887777788999987 3 33322 2211 1345689999999999777776778999999
Q ss_pred cCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 336 v~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
..+......+... ...+.++++.+++
T Consensus 258 ~~g~~~~~~~~~~-~~~~~~i~~~~~g 283 (300)
T 2qc5_A 258 NDNTIQEYQLQTE-NAEPHGITFGKDG 283 (300)
T ss_dssp TTSCEEEEECCST-TCCCCCEEECTTS
T ss_pred CCCcEEEEECCcc-CCccceeEeCCCC
Confidence 8543222222211 2345555555554
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.52 E-value=1.1e-05 Score=94.21 Aligned_cols=255 Identities=9% Similarity=0.082 Sum_probs=137.2
Q ss_pred EEEEeeCCeEEEEEc-----------CCcEEEEecCCCceeEEEEeeC-hHHHhhhcceeEEEEecCCcEEEEEeC--CC
Q 001202 24 IIYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRD-SESVQREGENLQAVWSPDTKLIAVVTS--SL 89 (1124)
Q Consensus 24 iv~fS~dg~llA~~~-----------~~~l~IW~~~~~~~~l~~~~r~-~~sl~~~G~~~~v~wSPDg~~Lav~t~--dg 89 (1124)
-+.+||||+++.++. ++.|.++|.. ....+....-. ......-..-..+.|||||+++.++.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~-t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV-TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT-TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC-CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCC
Confidence 577999998654442 4679999995 55555443211 000000011236899999999999874 57
Q ss_pred eEEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecC-CeEEEEecCCcEEEEeccCcccccee
Q 001202 90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFE 168 (1124)
Q Consensus 90 ~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~~llv~t~dg~v~~~~Wd~~~~~~~~ 168 (1124)
.|.++|+.+.+.. ..+.+.+ ...+.+++ ..++..+.||.+..+...........
T Consensus 201 ~VsVID~~t~kvv---------------------~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 201 AVGVVDLEGKTFD---------------------RMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp EEEEEETTTTEEE---------------------EEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred eEEEEECCCCeEE---------------------EEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 8999998754311 0111111 01122222 33445556776665554211110000
Q ss_pred eccCCCCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEe---e
Q 001202 169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL---A 245 (1124)
Q Consensus 169 l~~~~~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~---w 245 (1124)
. ..+..+. ......+.|+++.......+..|++.+.......+.+ |
T Consensus 256 -----------~-~~~~v~~-------------------~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~ 304 (426)
T 3c75_H 256 -----------T-EVFHTED-------------------ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPI 304 (426)
T ss_dssp -----------C-CCCSCTT-------------------SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCE
T ss_pred -----------e-eeeccCC-------------------CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeee
Confidence 0 0000000 0000012334433333333444444444333333322 1
Q ss_pred ecccccee-cC-CCCeE-EEEEccCCCEEEEEec----------CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEE
Q 001202 246 EFIKIDKE-LG-SGDAV-CASIAPEQQILAVGTR----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC 312 (1124)
Q Consensus 246 d~~~~~~~-~g-h~~~v-~va~spdg~lLAsGs~----------DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~ 312 (1124)
........ .+ ..... .++++|+++.+.+... +++|.+.|..+ .+.+.++.+.. ....
T Consensus 305 ~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~---------~P~g 374 (426)
T 3c75_H 305 EALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIELGH---------EIDS 374 (426)
T ss_dssp ESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEE---------EECE
T ss_pred eeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEECCC---------CcCe
Confidence 11100000 00 00111 3689999887666542 35799999988 77777776321 3688
Q ss_pred EEECCCCC-EEEEEE-CCCcEEEEEcCCCeeeEEe
Q 001202 313 IAWTPDNS-AFAVGW-KSRGLTVWSVSGCRLMSTI 345 (1124)
Q Consensus 313 lawSPDG~-~Lasgs-~Dg~I~vWdv~~~~l~~tl 345 (1124)
++|+|||+ .++++. .++.|.|+|+.+.+.+.++
T Consensus 375 ia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 375 INVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 99999999 888888 5899999999999999887
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.50 E-value=0.00015 Score=79.36 Aligned_cols=232 Identities=8% Similarity=-0.003 Sum_probs=131.9
Q ss_pred EEEEecCCcEEEEEecCCceEeeecccccee----cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEee
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~----~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~ 297 (1124)
.+++.++|+++++...++.+..++.. ++.. ......+ ++++++++.+.++...++.|..|+.+ ++. ..+..
T Consensus 24 ~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~--g~~-~~~~~ 99 (300)
T 2qc5_A 24 GITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK--GGF-TEYPL 99 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCE-EEEEC
T ss_pred eeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC--CCe-EEecC
Confidence 34455777777766666667777654 2211 1222345 99999999988877778899999876 332 22321
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---e
Q 001202 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~ 374 (1124)
. + ....+.++++.|+|+..++...++.|..++..+......+... ...+..+++.+++ ..+++.. .
T Consensus 100 ~--~----~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~~~~~~i~~d~~g----~l~v~~~~~~~ 168 (300)
T 2qc5_A 100 P--Q----PDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNK-GSYPAFITLGSDN----ALWFTENQNNS 168 (300)
T ss_dssp S--S----TTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSST-TCCEEEEEECTTS----SEEEEETTTTE
T ss_pred C--C----CCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCC-CCCceeEEECCCC----CEEEEecCCCe
Confidence 1 1 2356899999999998888777889999998843322233322 3567888888877 5555432 5
Q ss_pred EEEEeCCCCeEEEE-ecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCC
Q 001202 375 MMQWDEYGYRLYAI-EEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (1124)
Q Consensus 375 i~~W~~~~~~l~~~-~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~ 453 (1124)
+..++.. ++.... ...+...+..+.+ ..++ .+|-...+...+..+.... .......+ .+..
T Consensus 169 i~~~~~~-g~~~~~~~~~~~~~~~~i~~-------d~~g--~l~v~~~~~~~i~~~~~~g----~~~~~~~~----~~~~ 230 (300)
T 2qc5_A 169 IGRITNT-GKLEEYPLPTNAAAPVGITS-------GNDG--ALWFVEIMGNKIGRITTTG----EISEYDIP----TPNA 230 (300)
T ss_dssp EEEECTT-CCEEEEECSSTTCCEEEEEE-------CTTS--SEEEEETTTTEEEEECTTC----CEEEEECS----STTC
T ss_pred EEEECCC-CcEEEeeCCCCCCCcceEEE-------CCCC--CEEEEccCCCEEEEEcCCC----cEEEEECC----CCCC
Confidence 6677763 333222 1111122211111 1122 2232222233333332210 00111111 2334
Q ss_pred ceEEEEEccCCCEEEEEcCCCeE-EEEcCCCcEEEe
Q 001202 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (1124)
Q Consensus 454 ~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~wk~f 488 (1124)
.+.+++++++|+..++...++.+ .||. +++...+
T Consensus 231 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 265 (300)
T 2qc5_A 231 RPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEY 265 (300)
T ss_dssp CEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEE
T ss_pred CceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEE
Confidence 57889999999977666666777 9998 5665544
No 208
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.47 E-value=0.00023 Score=81.98 Aligned_cols=290 Identities=10% Similarity=-0.008 Sum_probs=154.2
Q ss_pred EeeCCeEEEEEc---CC---cEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeC----------CCe
Q 001202 27 FKVNNGLLLIAS---PC---HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----------SLY 90 (1124)
Q Consensus 27 fS~dg~llA~~~---~~---~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~----------dg~ 90 (1124)
..||++++-++. .+ +|.++|.. ....+.... . |....+++||||+.+.++.. ++.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~-t~~~~~~i~-~-------g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~ 98 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAG-SGSILGHVN-G-------GFLPNPVAAHSGSEFALASTSFSRIAKGKRTDY 98 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECC-CCeEEEEec-C-------CCCCCeEECCCCCEEEEEeccccccccCCCCCe
Confidence 467876543322 23 78999985 444443221 1 22238999999999999863 578
Q ss_pred EEEEEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEec--CCcEEEEeccCcccccee
Q 001202 91 LHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGAFE 168 (1124)
Q Consensus 91 l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~--dg~v~~~~Wd~~~~~~~~ 168 (1124)
|.+||+.+.+..-...... ......+....-..+.+|++.++++.. ++.|.+++ +. .....
T Consensus 99 v~viD~~t~~~~~~i~~~~--------------~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t--~~~~~ 161 (373)
T 2mad_H 99 VEVFDPVTFLPIADIELPD--------------APRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG--GSSDD 161 (373)
T ss_pred EEEEECCCCcEEEEEECCC--------------ccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC--CCEEe
Confidence 9999986432110000000 000000111123357788999998874 46677765 32 21110
Q ss_pred eccCCCCcccccc-ccccCCCCcccccCCCCeeecccCCCCceEEEEEecCC-cceEEEEecCCcEEEEEecCCceEeee
Q 001202 169 LVHSSNDSSVAAL-SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP-MRLLFVLYSNGQLMSCSVSKKGLKLAE 246 (1124)
Q Consensus 169 l~~~~~~~~~i~~-i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~-~~~~~~~s~dG~~~~~~~~d~~i~~wd 246 (1124)
. ++ -...+ .+.+. ...++.+.+||+.++... ++... +.
T Consensus 162 ------------~~i~-----------------------~~~~~---~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~-~~ 201 (373)
T 2mad_H 162 ------------QLLS-----------------------SPTCY---HIHPGAPSTFYLLCAQGGLAKTDH-AGGAA-GA 201 (373)
T ss_pred ------------EEcC-----------------------CCceE---EEEeCCCceEEEEcCCCCEEEEEC-CCcEE-EE
Confidence 0 00 00111 11111 123455667777666655 33322 10
Q ss_pred ccccceecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCC-ceeEEEeeccCC-CC-CCCCCCeEEEEECCCCCEE
Q 001202 247 FIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYDWG-YS-MDDTGPVSCIAWTPDNSAF 322 (1124)
Q Consensus 247 ~~~~~~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~-~~~~~l~~~~~g-~~-~~h~g~V~~lawSPDG~~L 322 (1124)
........+..... ..++.+++..++..+.++.|.+.|+.... ..+..+...... .. .-..+....++++|||+.+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 00000001111112 45667776655555578899999886521 222233211000 00 0012335568899999988
Q ss_pred EEEEC----------CCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcc-eEEEe---e-eEEEEeCCCCeEEE
Q 001202 323 AVGWK----------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLMSG---T-SMMQWDEYGYRLYA 387 (1124)
Q Consensus 323 asgs~----------Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~-~l~sg---~-~i~~W~~~~~~l~~ 387 (1124)
.++.. ++.|.+.|..+++.+.++... ....+++|+|++ + .+.++ . ++.++|..+++...
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg----~~~l~v~~~~~~~V~ViD~~t~~vv~ 355 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDG----GPDLYALSAGTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCC----CeEEEEEcCCCCeEEEEECCCCCEEe
Confidence 77654 357999999999998888653 357888999988 4 33322 1 67777777777665
Q ss_pred E
Q 001202 388 I 388 (1124)
Q Consensus 388 ~ 388 (1124)
.
T Consensus 356 ~ 356 (373)
T 2mad_H 356 S 356 (373)
T ss_pred e
Confidence 4
No 209
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.46 E-value=4.3e-06 Score=104.75 Aligned_cols=234 Identities=12% Similarity=0.025 Sum_probs=128.1
Q ss_pred EEEecCCcEEEEEec-----CCceEeeeccccceecCCCCe--E-EEEEccCCCEEEEEecCCe-------------EEE
Q 001202 224 FVLYSNGQLMSCSVS-----KKGLKLAEFIKIDKELGSGDA--V-CASIAPEQQILAVGTRRGV-------------VEL 282 (1124)
Q Consensus 224 ~~~s~dG~~~~~~~~-----d~~i~~wd~~~~~~~~gh~~~--v-~va~spdg~lLAsGs~Dgt-------------V~v 282 (1124)
+.++|||+.++.+.+ ..+++++|..+++....+... . .++|+ |++.|+.++.+.. |++
T Consensus 134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~ 212 (693)
T 3iuj_A 134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYF 212 (693)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEE
T ss_pred EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEE
Confidence 345578887775442 256888998887654332222 2 67899 9999999988854 999
Q ss_pred EEcCCCCceeEEEeeccCCCCCC-CCCCeEEEEECCCCCEEEEEEC----CCcEEEEEcCCCe-eeEEeccCCcCceeee
Q 001202 283 YDLAESASLIRTVSLYDWGYSMD-DTGPVSCIAWTPDNSAFAVGWK----SRGLTVWSVSGCR-LMSTIRQISLSSISSP 356 (1124)
Q Consensus 283 wd~~~~~~~~~~l~~~~~g~~~~-h~g~V~~lawSPDG~~Lasgs~----Dg~I~vWdv~~~~-l~~tl~~h~~~~V~s~ 356 (1124)
|++.+....-..+. . . .. |...+..+.|||||++|+.... +..|.+|++.++. ....+..+ ......+
T Consensus 213 ~~lgt~~~~~~~v~--~-~--~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~-~~~~~~~ 286 (693)
T 3iuj_A 213 HRLGTAQEDDRLVF--G-A--IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD-LDADVSL 286 (693)
T ss_dssp EETTSCGGGCEEEE--S-C--SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS-SSSCEEE
T ss_pred EECCCCcccceEEE--e-c--CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC-CCceEEE
Confidence 99876332222222 0 1 11 3345788999999998865443 2479999987652 33444443 2333333
Q ss_pred EEcCCCCCCcceEEEe------eeEEEEeCCCCeE--EEEecCCcceEEEEec-cceEEee-ccCCc--eeeeEeeecCC
Q 001202 357 IVKPNQDCKYEPLMSG------TSMMQWDEYGYRL--YAIEEGSSERVLIFSF-GKCCLNR-GVSGM--TYARQVIYGED 424 (1124)
Q Consensus 357 ~~sp~~~~~~~~l~sg------~~i~~W~~~~~~l--~~~~~~~~~~v~~~s~-~k~~~s~-s~d~~--v~~w~l~~~~~ 424 (1124)
+++++. ..++.. ..+..|+..++.. +.....+...+..+++ ++.++.. ..++. +.+|++. +..
T Consensus 287 -~~~~g~---~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~-g~~ 361 (693)
T 3iuj_A 287 -VDNKGS---TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYE-GKR 361 (693)
T ss_dssp -EEEETT---EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTT-SCE
T ss_pred -EeccCC---EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECC-CCe
Confidence 444441 222221 1566777766432 1111122222225555 4444433 23332 2333221 111
Q ss_pred eEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCC----CeE-EEEcCCCcEEEe
Q 001202 425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH----GLI-LYDIRQKKWRVF 488 (1124)
Q Consensus 425 ~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~d----G~v-lwd~~sg~wk~f 488 (1124)
...+.. .....+..++++|+|+.++....+ +.+ .||+.+++.+.+
T Consensus 362 --------------~~~l~~-----p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l 411 (693)
T 3iuj_A 362 --------------VREVAL-----PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLY 411 (693)
T ss_dssp --------------EEEECC-----SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEE
T ss_pred --------------eEEeec-----CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEE
Confidence 011111 123446677788999887766554 667 888877766544
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.41 E-value=5.7e-05 Score=83.75 Aligned_cols=142 Identities=10% Similarity=0.015 Sum_probs=82.7
Q ss_pred Eec-CCcEEEEEecCCceEeeecccccee-cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCC
Q 001202 226 LYS-NGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (1124)
Q Consensus 226 ~s~-dG~~~~~~~~d~~i~~wd~~~~~~~-~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~ 302 (1124)
+++ +|+++++....+.+..|+..+++.. ......+ +++++|+|+++++. ++.|.+||.++ ++...... ...+
T Consensus 20 w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~-g~~~~~~~-~~~~- 94 (297)
T 3g4e_A 20 WEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATI--GTKFCALNWKE-QSAVVLAT-VDND- 94 (297)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTT-TEEEEEEE-CCTT-
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEE--CCeEEEEECCC-CcEEEEEe-cCCC-
Confidence 334 4556666666677777776554321 2223456 99999999966553 67899999876 54332222 1101
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEECC---------CcEEEEEcCC-CeeeEEeccCCcCceeeeEEcCCCCCCcceE-EE
Q 001202 303 SMDDTGPVSCIAWTPDNSAFAVGWKS---------RGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MS 371 (1124)
Q Consensus 303 ~~~h~g~V~~lawSPDG~~Lasgs~D---------g~I~vWdv~~-~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l-~s 371 (1124)
.....+++++++|||+..++...+ ..-+||.+.. +.......+ ....+.++|+|++ +.+ ++
T Consensus 95 --~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~--~~~pngi~~spdg----~~lyv~ 166 (297)
T 3g4e_A 95 --KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ--VDISNGLDWSLDH----KIFYYI 166 (297)
T ss_dssp --CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE--ESBEEEEEECTTS----CEEEEE
T ss_pred --CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec--cccccceEEcCCC----CEEEEe
Confidence 123457899999999977765432 3346666542 232222222 3346788999987 433 33
Q ss_pred ee---eEEEEeC
Q 001202 372 GT---SMMQWDE 380 (1124)
Q Consensus 372 g~---~i~~W~~ 380 (1124)
.. .+..|+.
T Consensus 167 ~~~~~~i~~~~~ 178 (297)
T 3g4e_A 167 DSLSYSVDAFDY 178 (297)
T ss_dssp EGGGTEEEEEEE
T ss_pred cCCCCcEEEEec
Confidence 22 5666764
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.37 E-value=7.1e-05 Score=82.99 Aligned_cols=96 Identities=8% Similarity=0.121 Sum_probs=69.5
Q ss_pred EEEEccCCCEE-EEEecCCeEEEEEcC-CCCcee--EEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEc
Q 001202 261 CASIAPEQQIL-AVGTRRGVVELYDLA-ESASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1124)
Q Consensus 261 ~va~spdg~lL-AsGs~DgtV~vwd~~-~~~~~~--~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv 336 (1124)
.++|+|+++.+ ++.+.++.|.+|+++ ..+... +.+. ... .+.+....++++++|+..++.+.++.|.+||.
T Consensus 153 gi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~--~~~---~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 153 GLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVY--KLE---KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP 227 (297)
T ss_dssp EEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEE--ECC---GGGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred ceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEE--ECC---CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence 78999999865 566678999999985 224322 1121 111 13356788999999998888888889999999
Q ss_pred CCCeeeEEeccCCcCceeeeEEc-CCC
Q 001202 337 SGCRLMSTIRQISLSSISSPIVK-PNQ 362 (1124)
Q Consensus 337 ~~~~l~~tl~~h~~~~V~s~~~s-p~~ 362 (1124)
.+++++.++..+ ...+++++|. |++
T Consensus 228 ~tG~~~~~i~~p-~~~~t~~~f~g~d~ 253 (297)
T 3g4e_A 228 VTGKRLQTVKLP-VDKTTSCCFGGKNY 253 (297)
T ss_dssp TTCCEEEEEECS-SSBEEEEEEESGGG
T ss_pred CCceEEEEEECC-CCCceEEEEeCCCC
Confidence 988888887665 4567888886 554
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.32 E-value=0.00016 Score=81.38 Aligned_cols=142 Identities=10% Similarity=-0.024 Sum_probs=81.4
Q ss_pred EEecC-CcEEEEEecCCceEeeecccccee-cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCC
Q 001202 225 VLYSN-GQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (1124)
Q Consensus 225 ~~s~d-G~~~~~~~~d~~i~~wd~~~~~~~-~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g 301 (1124)
+++++ +.++++...++.+..|+..+++.. ......+ +++++|+|+++++. .+ .|.+||.++ ++.. .+.....+
T Consensus 55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~-g~~~-~~~~~~~~ 130 (326)
T 2ghs_A 55 TFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTAT-GVLT-LHAELESD 130 (326)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTT-CCEE-EEECSSTT
T ss_pred eEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCC-CcEE-EEeeCCCC
Confidence 34455 445555555667777776544321 1123456 99999999987754 44 488999876 4432 23211001
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEECC------CcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceE-EEee-
Q 001202 302 YSMDDTGPVSCIAWTPDNSAFAVGWKS------RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT- 373 (1124)
Q Consensus 302 ~~~~h~g~V~~lawSPDG~~Lasgs~D------g~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l-~sg~- 373 (1124)
.....+.+++++|||+..++...+ +.|..++ ++.......+ ....+.++|+|++ +.+ ++..
T Consensus 131 ---~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~--~~~~~~i~~s~dg----~~lyv~~~~ 199 (326)
T 2ghs_A 131 ---LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD--ISIPNSICFSPDG----TTGYFVDTK 199 (326)
T ss_dssp ---CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--ESSEEEEEECTTS----CEEEEEETT
T ss_pred ---CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--CcccCCeEEcCCC----CEEEEEECC
Confidence 112458999999999977765432 3455555 4443322221 2346788899987 433 3221
Q ss_pred --eEEEEeCC
Q 001202 374 --SMMQWDEY 381 (1124)
Q Consensus 374 --~i~~W~~~ 381 (1124)
.+..|+.+
T Consensus 200 ~~~I~~~d~~ 209 (326)
T 2ghs_A 200 VNRLMRVPLD 209 (326)
T ss_dssp TCEEEEEEBC
T ss_pred CCEEEEEEcc
Confidence 56677764
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.27 E-value=0.00014 Score=84.92 Aligned_cols=242 Identities=10% Similarity=0.043 Sum_probs=131.5
Q ss_pred eEEEEecCCcEEEEEecCCceEeeecccccee---cCCCCeEEEEEccCCCEEEEEecCC--eEEEEEcCCCCceeEEEe
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVS 296 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v~va~spdg~lLAsGs~Dg--tV~vwd~~~~~~~~~~l~ 296 (1124)
..++++++|+++++...+..++.|+..++... ...... +++|+|+++.|.++..++ .|.+|+... +.....+.
T Consensus 134 ~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~ia~~~~g~~l~~~d~~~~~~I~~~d~~~-~~~~~~~g 211 (409)
T 3hrp_A 134 WGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-KPAVTKDKQRVYSIGWEGTHTVYVYMKAS-GWAPTRIG 211 (409)
T ss_dssp EEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-BCEECTTSSEEEEEBSSTTCEEEEEEGGG-TTCEEEEE
T ss_pred eEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-ceeEecCCCcEEEEecCCCceEEEEEcCC-CceeEEee
Confidence 35666788988888777788888887654332 121122 489999999988888766 788888765 33333331
Q ss_pred eccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEE----eccCCcCce--eeeEEcCCCCCCcceEE
Q 001202 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST----IRQISLSSI--SSPIVKPNQDCKYEPLM 370 (1124)
Q Consensus 297 ~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~t----l~~h~~~~V--~s~~~sp~~~~~~~~l~ 370 (1124)
.. + ..+...+.+++++|++..|..+..++.|..|+..++..... ..++ .... +.++++|++. ..++
T Consensus 212 ~~--~--~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~-~~~~P~~~ia~~p~~g---~lyv 283 (409)
T 3hrp_A 212 QL--G--STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS-LGTNPGPYLIYYFVDS---NFYM 283 (409)
T ss_dssp EC--C--TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC-CCCSSCCEEEEETTTT---EEEE
T ss_pred ec--c--chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC-CCCCccccEEEeCCCC---EEEE
Confidence 10 0 01335578899999544555577788999999987753221 1121 1111 3888998531 4444
Q ss_pred Eee---eEEEEeCCCCeEEEEecC----Cc---------ceE--EEEec-cceEEeec-cCCceeeeEeeecCCeEEEee
Q 001202 371 SGT---SMMQWDEYGYRLYAIEEG----SS---------ERV--LIFSF-GKCCLNRG-VSGMTYARQVIYGEDRLLVVQ 430 (1124)
Q Consensus 371 sg~---~i~~W~~~~~~l~~~~~~----~~---------~~v--~~~s~-~k~~~s~s-~d~~v~~w~l~~~~~~l~l~~ 430 (1124)
+.. .+..|+.++......... .. ... ++++. ++..++-. .++.++.|+...+ .+....
T Consensus 284 ~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G--~v~~~~ 361 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG--YVSTVA 361 (409)
T ss_dssp EETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT--EEEEEE
T ss_pred EeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC--EEEEEe
Confidence 432 777888776532222211 00 011 34444 44444544 4555555553222 121111
Q ss_pred cCC-CccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEc
Q 001202 431 SED-TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1124)
Q Consensus 431 ~~~-~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~ 480 (1124)
+.. ... +... +. ....-.....++++|+|..+++-..++.| .+++
T Consensus 362 g~~~~~g--~~~g--~~-~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVDVAS--QIDG--TP-LEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTTCBS--CCCB--ST-TTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCC--cCCC--Ch-hceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 110 000 0000 00 00001235789999998777777666666 5543
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.23 E-value=4.7e-05 Score=95.30 Aligned_cols=196 Identities=14% Similarity=0.116 Sum_probs=109.3
Q ss_pred cCCCCeE-EEEEccCCCEEEEEe-----cCCeEEEEEcCCCCceeEE-EeeccCCCCCCCCCCeEEEEECCCCCEEEEEE
Q 001202 254 LGSGDAV-CASIAPEQQILAVGT-----RRGVVELYDLAESASLIRT-VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (1124)
Q Consensus 254 ~gh~~~v-~va~spdg~lLAsGs-----~DgtV~vwd~~~~~~~~~~-l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs 326 (1124)
.+|...+ .++|||||++||.+. .+.+|++||+++ ++.+.. +. + .....++|+ ||+.|+.++
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t-g~~~~~~~~----~------~k~~~~~Ws-Dg~~l~y~~ 192 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES-KQPLETPLK----D------VKFSGISWL-GNEGFFYSS 192 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT-CSEEEEEEE----E------EESCCCEEE-TTTEEEEEE
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC-CCCCccccC----C------ceeccEEEe-CCCEEEEEE
Confidence 3566677 899999999999543 335799999988 654332 22 1 112467899 999999998
Q ss_pred CCCc-------------EEEEEcCCCe----eeEEecc-CCcCceeeeEEcCCCCCCcceEE-Eee------eEEEEeCC
Q 001202 327 KSRG-------------LTVWSVSGCR----LMSTIRQ-ISLSSISSPIVKPNQDCKYEPLM-SGT------SMMQWDEY 381 (1124)
Q Consensus 327 ~Dg~-------------I~vWdv~~~~----l~~tl~~-h~~~~V~s~~~sp~~~~~~~~l~-sg~------~i~~W~~~ 381 (1124)
.|.. |.+|++.++. ++..... + ...+.++.++|++ +.++ +.. .+.+|+..
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~-~~~~~~~~~SpDg----~~l~~~~~~~~~~~~i~~~d~~ 267 (693)
T 3iuj_A 193 YDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ-HHRYVGATVTEDD----RFLLISAANSTSGNRLYVKDLS 267 (693)
T ss_dssp SSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG-CCSEEEEEECTTS----CEEEEEEESSSSCCEEEEEETT
T ss_pred ecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCC-CeEEEEEEEcCCC----CEEEEEEccCCCCcEEEEEECC
Confidence 8854 9999997754 2322222 2 3346788899998 5542 211 45566665
Q ss_pred CC--eEEEEecCCcceEEEEec-cceE-EeeccC---CceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCc
Q 001202 382 GY--RLYAIEEGSSERVLIFSF-GKCC-LNRGVS---GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (1124)
Q Consensus 382 ~~--~l~~~~~~~~~~v~~~s~-~k~~-~s~s~d---~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~ 454 (1124)
++ +..............++. ++.+ +..+.+ +.+..+++..+.. ..|+ .+..|...
T Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~------------~~~~------~l~~~~~~ 329 (693)
T 3iuj_A 268 QENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGP------------AHWR------DLIPERQQ 329 (693)
T ss_dssp STTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG------------GGCE------EEECCCSS
T ss_pred CCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc------------cccE------EEecCCCC
Confidence 44 222222211111121222 3332 222222 1222222221111 1122 23344444
Q ss_pred eEEEEEccCCCEEEEEcCCC---eE-EEEcCCCcEE
Q 001202 455 VQHVAASKDGMFLAVAGLHG---LI-LYDIRQKKWR 486 (1124)
Q Consensus 455 I~~va~SpdG~~lAvag~dG---~v-lwd~~sg~wk 486 (1124)
+. .|+++|++|+....++ .+ +|++.++..+
T Consensus 330 ~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~ 363 (693)
T 3iuj_A 330 VL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVR 363 (693)
T ss_dssp CE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEE
T ss_pred EE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeE
Confidence 44 8999999988776544 45 8888765443
No 215
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.17 E-value=4.1e-05 Score=87.73 Aligned_cols=77 Identities=8% Similarity=-0.062 Sum_probs=59.4
Q ss_pred EEEccCCCEEEEEec-C--------CeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCC-EEEEEE-CCCc
Q 001202 262 ASIAPEQQILAVGTR-R--------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGW-KSRG 330 (1124)
Q Consensus 262 va~spdg~lLAsGs~-D--------gtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~-~Lasgs-~Dg~ 330 (1124)
++++||++.+.++.. + +.+.++|+.+ .+.+.++... +....++|+|||+ .+++.. .+++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg---------~~p~gi~~s~Dg~~l~va~~~~~~~ 338 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNG---------HDSDAIIAAQDGASDNYANSAGTEV 338 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEE---------EEECEEEECCSSSCEEEEEETTTTE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECC---------CCcceEEECCCCCEEEEEccCCCCe
Confidence 789999987776543 2 3566999988 7767666532 1368899999998 566666 5899
Q ss_pred EEEEEcCCCeeeEEeccC
Q 001202 331 LTVWSVSGCRLMSTIRQI 348 (1124)
Q Consensus 331 I~vWdv~~~~l~~tl~~h 348 (1124)
|.|+|+.+.+.+.++..+
T Consensus 339 VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 339 LDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEEEESSSCEEEEECCCC
T ss_pred EEEEECCCCcEEEEEECC
Confidence 999999999999998754
No 216
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.14 E-value=0.00026 Score=80.19 Aligned_cols=126 Identities=11% Similarity=-0.012 Sum_probs=81.9
Q ss_pred cceEEEEecCCcEEEEEe--cCCceEeeecccccee---------cCCCCeE-EEEEccCCCEEEEEec-----CCeEEE
Q 001202 220 MRLLFVLYSNGQLMSCSV--SKKGLKLAEFIKIDKE---------LGSGDAV-CASIAPEQQILAVGTR-----RGVVEL 282 (1124)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~--~d~~i~~wd~~~~~~~---------~gh~~~v-~va~spdg~lLAsGs~-----DgtV~v 282 (1124)
....+++++||+++++.. .++..++|...+++.. .+|...+ .+++++++++.++-.. ++.|.+
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~ 97 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVA 97 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEE
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEE
Confidence 334566778888877753 2232444443333221 1234456 9999999998877654 689999
Q ss_pred EEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCC-EEEEEE---CCCcEEEEEcCCCeeeEEeccC
Q 001202 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGW---KSRGLTVWSVSGCRLMSTIRQI 348 (1124)
Q Consensus 283 wd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~-~Lasgs---~Dg~I~vWdv~~~~l~~tl~~h 348 (1124)
||.++ ++.++++.+.... ..+...+..++++|++. ..++.. .+++|.+||..+++....+.+|
T Consensus 98 ~d~~t-g~~~~~~~~~~~~--~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~ 164 (343)
T 2qe8_A 98 WDTLN-NQLSRVIYLPPPI--TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGY 164 (343)
T ss_dssp EETTT-TEEEEEEECCTTT--SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTC
T ss_pred EECCC-CeEEEEEECChhh--cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCC
Confidence 99987 7766666543211 12344578999998654 445555 6789999999988877766553
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.11 E-value=0.00051 Score=80.07 Aligned_cols=209 Identities=13% Similarity=0.047 Sum_probs=121.0
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCC--cEEEEE
Q 001202 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR--GLTVWS 335 (1124)
Q Consensus 258 ~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg--~I~vWd 335 (1124)
.+..++++|+++++++...++.|++||.++ +....... + ... .. ++|+|+|+.|+++..++ .|.+|+
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~-g~~~~~~~----~----~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDD-NKVTTVHP----G----FKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTT-TEEEEEEE----T----CCB-CB-CEECTTSSEEEEEBSSTTCEEEEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCC-CEEEEeec----c----CCC-Cc-eeEecCCCcEEEEecCCCceEEEEE
Confidence 455899999999998888889999999876 54433333 1 122 23 99999999999988866 788888
Q ss_pred cCCCeeeEEe---ccCCcCceeeeEEcCCCCCCcceEEEee--eEEEEeCCCCeEEEE----ecCCc--c-e-EEEEec-
Q 001202 336 VSGCRLMSTI---RQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAI----EEGSS--E-R-VLIFSF- 401 (1124)
Q Consensus 336 v~~~~l~~tl---~~h~~~~V~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l~~~----~~~~~--~-~-v~~~s~- 401 (1124)
..++.....+ ..+......+++++|++. ..+++.. .+..|+..++..... ..++. . . =+++++
T Consensus 201 ~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g---~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~ 277 (409)
T 3hrp_A 201 KASGWAPTRIGQLGSTFSGKIGAVALDETEE---WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFV 277 (409)
T ss_dssp GGGTTCEEEEEECCTTSCSCCCBCEECTTSS---EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETT
T ss_pred cCCCceeEEeeeccchhcCCcEEEEEeCCCC---eEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCC
Confidence 8766543344 111235677889998431 4444322 677888877654433 11111 1 1 244454
Q ss_pred -cceEEeeccCCceeeeEeeecCCeEEEeecCC-CccceeeecccceeeccCCCceEEEEEccCCCEEEEEc-CCCeE-E
Q 001202 402 -GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED-TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-L 477 (1124)
Q Consensus 402 -~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~-~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag-~dG~v-l 477 (1124)
+...++....+.+..++.. +. +....+.. ... +... +......+ ....++++|+|+.+++-+ .++.| .
T Consensus 278 ~g~lyv~d~~~~~I~~~~~~-g~--~~~~~g~~~~~g--~~dg--~~~~~~~~-~P~gia~d~dG~lyvad~~~~~~I~~ 349 (409)
T 3hrp_A 278 DSNFYMSDQNLSSVYKITPD-GE--CEWFCGSATQKT--VQDG--LREEALFA-QPNGMTVDEDGNFYIVDGFKGYCLRK 349 (409)
T ss_dssp TTEEEEEETTTTEEEEECTT-CC--EEEEEECTTCCS--CBCE--EGGGCBCS-SEEEEEECTTCCEEEEETTTTCEEEE
T ss_pred CCEEEEEeCCCCEEEEEecC-CC--EEEEEeCCCCCC--cCCC--cccccEeC-CCeEEEEeCCCCEEEEeCCCCCEEEE
Confidence 3333444444555444321 11 11111110 000 0000 00000012 247899999999777777 78888 9
Q ss_pred EEcCCCcEEEe
Q 001202 478 YDIRQKKWRVF 488 (1124)
Q Consensus 478 wd~~sg~wk~f 488 (1124)
|+..+++...+
T Consensus 350 ~~~~~G~v~~~ 360 (409)
T 3hrp_A 350 LDILDGYVSTV 360 (409)
T ss_dssp EETTTTEEEEE
T ss_pred EECCCCEEEEE
Confidence 99878876544
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.11 E-value=0.00042 Score=77.91 Aligned_cols=95 Identities=7% Similarity=0.091 Sum_probs=63.9
Q ss_pred EEEEccCCCEEEE-EecCCeEEEEEcC-CCC-ce--eEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEE
Q 001202 261 CASIAPEQQILAV-GTRRGVVELYDLA-ESA-SL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1124)
Q Consensus 261 ~va~spdg~lLAs-Gs~DgtV~vwd~~-~~~-~~--~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWd 335 (1124)
.++|+|+++.+.. .+.++.|.+|+++ ..+ .. ...+... . ...+....++++++|+..++.+.+++|.+|+
T Consensus 183 ~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~--~---~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d 257 (326)
T 2ghs_A 183 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS--T---GIKGGMDGSVCDAEGHIWNARWGEGAVDRYD 257 (326)
T ss_dssp EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC--T---TSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred CeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEEC--C---CCCCCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence 8899999986654 4557899999986 213 22 1222210 0 1345578899999999888888888999999
Q ss_pred cCCCeeeEEeccCCcCceeeeEEc-CCC
Q 001202 336 VSGCRLMSTIRQISLSSISSPIVK-PNQ 362 (1124)
Q Consensus 336 v~~~~l~~tl~~h~~~~V~s~~~s-p~~ 362 (1124)
.. ++.+.++..+ ...+++++|+ |++
T Consensus 258 ~~-g~~~~~i~~~-~~~~~~~af~g~d~ 283 (326)
T 2ghs_A 258 TD-GNHIARYEVP-GKQTTCPAFIGPDA 283 (326)
T ss_dssp TT-CCEEEEEECS-CSBEEEEEEESTTS
T ss_pred CC-CCEEEEEECC-CCCcEEEEEecCCC
Confidence 94 5556666544 3456777776 554
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.11 E-value=6.7e-05 Score=85.16 Aligned_cols=115 Identities=10% Similarity=0.093 Sum_probs=69.3
Q ss_pred cCCcEEEEEecCCceEeeeccccceecCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCC----Cc-----e---eEEE
Q 001202 228 SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES----AS-----L---IRTV 295 (1124)
Q Consensus 228 ~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~----~~-----~---~~~l 295 (1124)
.+|+.+.+...+++++.|.. ..-.++++||++.|.++..++. ++|.++.. +. . +...
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~----------~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHL----------GVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERY 244 (343)
T ss_dssp ETTEECBEECTTSCEECCCC----------CEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEE
T ss_pred ECCEEEEeccCCCceeceec----------ccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEec
Confidence 45655554455555554421 1227999999998888877764 55655320 10 0 0111
Q ss_pred eeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 296 ~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
| +.+....+++++||...++.+.++.|.+||..+++..............++++.+++
T Consensus 245 -----g----~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g 302 (343)
T 2qe8_A 245 -----S----EKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG 302 (343)
T ss_dssp -----E----ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS
T ss_pred -----c----cCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC
Confidence 1 344556799999999999999999999999944443222221112345666666554
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.05 E-value=0.00035 Score=77.58 Aligned_cols=130 Identities=9% Similarity=0.046 Sum_probs=80.5
Q ss_pred EEEEecCCc-EEEEEecCCceEeeeccccce--ecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeec
Q 001202 223 LFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1124)
Q Consensus 223 ~~~~s~dG~-~~~~~~~d~~i~~wd~~~~~~--~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~ 298 (1124)
..+++++|+ ++++...++.+..|+. +++. +..+...+ .++++++|+++++...++.|.+|+.+ ++. ..+...
T Consensus 49 gp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~--g~~-~~~~~~ 124 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD--GQA-HLLVGR 124 (305)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCE-EEEECE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC--CCE-EEEEec
Confidence 345567777 5555556677777765 3321 22334445 89999999988776667889999875 332 222211
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEE----EEC-------------CCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCC
Q 001202 299 DWGYSMDDTGPVSCIAWTPDNSAFAV----GWK-------------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (1124)
Q Consensus 299 ~~g~~~~h~g~V~~lawSPDG~~Las----gs~-------------Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~ 361 (1124)
..+ .....+++++++|||+..++ |.. .+.|..++..+++..... + ....+.++|+|+
T Consensus 125 ~~~---~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~--~~~p~gl~~spd 198 (305)
T 3dr2_A 125 YAG---KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D--LDHPNGLAFSPD 198 (305)
T ss_dssp ETT---EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E--ESSEEEEEECTT
T ss_pred cCC---CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c--CCCCcceEEcCC
Confidence 101 01234678999999998886 332 246777777666543332 2 345677889998
Q ss_pred C
Q 001202 362 Q 362 (1124)
Q Consensus 362 ~ 362 (1124)
+
T Consensus 199 g 199 (305)
T 3dr2_A 199 E 199 (305)
T ss_dssp S
T ss_pred C
Confidence 7
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.97 E-value=0.001 Score=73.80 Aligned_cols=94 Identities=12% Similarity=0.007 Sum_probs=66.6
Q ss_pred EEEEccCCC-EEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001202 261 CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1124)
Q Consensus 261 ~va~spdg~-lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~ 339 (1124)
..+|+|+++ ++.++..++.|..|+.+ ++ ...+. . +.+.+..++|+|||+.+++...++.|.+|+..+.
T Consensus 49 gp~~~~~g~~l~~~d~~~~~i~~~~~~--g~-~~~~~----~----~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~ 117 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLVGRRVLGWRED--GT-VDVLL----D----ATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQ 117 (305)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEETT--SC-EEEEE----E----SCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEeCC--CC-EEEEe----C----CCCccceeeECCCCCEEEEECCCCEEEEECCCCC
Confidence 789999998 77888889999999873 33 33333 1 4566899999999997776666689999998743
Q ss_pred eeeEEe----ccCCcCceeeeEEcCCCCCCcceEEE
Q 001202 340 RLMSTI----RQISLSSISSPIVKPNQDCKYEPLMS 371 (1124)
Q Consensus 340 ~l~~tl----~~h~~~~V~s~~~sp~~~~~~~~l~s 371 (1124)
. ..+ .+.....++.+++.|++ ..+++
T Consensus 118 -~-~~~~~~~~~~~~~~~~~i~~d~dG----~l~~t 147 (305)
T 3dr2_A 118 -A-HLLVGRYAGKRLNSPNDLIVARDG----AIWFT 147 (305)
T ss_dssp -E-EEEECEETTEECSCCCCEEECTTS----CEEEE
T ss_pred -E-EEEEeccCCCccCCCCCEEECCCC----CEEEe
Confidence 2 222 12112456778898887 66664
No 222
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.96 E-value=0.0048 Score=70.66 Aligned_cols=275 Identities=11% Similarity=0.012 Sum_probs=156.4
Q ss_pred EEEEccCCCEEEEEec-----CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE---------
Q 001202 261 CASIAPEQQILAVGTR-----RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW--------- 326 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~-----DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs--------- 326 (1124)
.....|+++.+.+... +++|.+.|..+ .+.+.++.. | .++ . +++||||+++.++.
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t-~~v~~~I~v---G-----~~P-~-va~spDG~~lyVan~~~~r~~~G 105 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEA-GRVIGMIDG---G-----FLP-N-PVVADDGSFIAHASTVFSRIARG 105 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTT-TEEEEEEEE---C-----SSC-E-EEECTTSSCEEEEEEEEEETTEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCC-CeEEEEEEC---C-----CCC-c-EEECCCCCEEEEEcccccccccC
Confidence 3455688877666654 67999999988 777777763 2 334 4 99999999887765
Q ss_pred -CCCcEEEEEcCCCeeeEEeccCC------cCceeeeEEcCCCCCCcceE-EEe----eeEEEEeCCCCeEEEEecCCcc
Q 001202 327 -KSRGLTVWSVSGCRLMSTIRQIS------LSSISSPIVKPNQDCKYEPL-MSG----TSMMQWDEYGYRLYAIEEGSSE 394 (1124)
Q Consensus 327 -~Dg~I~vWdv~~~~l~~tl~~h~------~~~V~s~~~sp~~~~~~~~l-~sg----~~i~~W~~~~~~l~~~~~~~~~ 394 (1124)
.+++|.+||..+.+.+.++.-.. ...-..++++|++ +.+ ++. .++-++|..+.+......-. +
T Consensus 106 ~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG----k~lyVan~~~~~~VsVID~~t~~vv~tI~v~-g 180 (386)
T 3sjl_D 106 ERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG----KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-D 180 (386)
T ss_dssp EEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS----SEEEEEECSSSCEEEEEETTTTEEEEEEECC-S
T ss_pred CCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC----CEEEEEEcCCCCeEEEEECCCCcEEEEEECC-C
Confidence 35789999999999888874211 1234568899998 433 221 26778999999988776432 1
Q ss_pred eEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceE-EEEE-ccCCCEEEEEc
Q 001202 395 RVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ-HVAA-SKDGMFLAVAG 471 (1124)
Q Consensus 395 ~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~-~va~-SpdG~~lAvag 471 (1124)
....++. .+.+++.+.||..-..++... .++..... .. +.....++. ..+| .++|+++. .+
T Consensus 181 ~~~~~P~g~~~~~~~~~DG~~~~v~~~~~-g~v~~~~~--------~~------~~~~~~~~~~~~~~~~~dG~~~~-vs 244 (386)
T 3sjl_D 181 CYHIFPTAPDTFFMHCRDGSLAKVAFGTE-GTPEITHT--------EV------FHPEDEFLINHPAYSQKAGRLVW-PT 244 (386)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEECCSS-SCCEEEEC--------CC------CSCTTSCBCSCCEEETTTTEEEE-EB
T ss_pred cceeecCCCceeEEECCCCCEEEEECCCC-CeEEEeec--------ce------eccccccccccceeEcCCCcEEE-Ee
Confidence 2222333 455667788887766554331 11110000 00 000111221 1355 47886655 55
Q ss_pred CCCeE-EEEcCCCc------EEEecCcCceeeeE-----EEEEEecCCEEEEEEEec-----CCCeEEEEEeeCCCCCCc
Q 001202 472 LHGLI-LYDIRQKK------WRVFGDITQEQKIQ-----SKGLLWLGKIIVVCNYID-----SSNTYELLFYPRYHLDQS 534 (1124)
Q Consensus 472 ~dG~v-lwd~~sg~------wk~f~~~~~e~~~~-----v~gl~W~~~~liv~~~~~-----~~~~~elrly~~~~ld~~ 534 (1124)
.+|.+ +.|..++. |.+|.....+.... ..++.=.++.+.++.... .+...++-+++.. ..
T Consensus 245 ~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~---t~ 321 (386)
T 3sjl_D 245 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK---TG 321 (386)
T ss_dssp TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT---TC
T ss_pred CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC---CC
Confidence 57888 99986653 44333211111111 112222345555543211 1224577777774 23
Q ss_pred ceEEEeecCCcc--EEEEeeCC-EEEEEE-cCCeEEEEEE
Q 001202 535 SLLCRKSLLAKP--IVMDVYED-YILVTY-RPFDVHIFHV 570 (1124)
Q Consensus 535 ~~l~~~~l~s~~--l~l~~~~~-~llv~~-~d~~i~l~~~ 570 (1124)
.++.+..+...+ +.+++.+. .|++.. .++++.+|+.
T Consensus 322 kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 322 ERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp CEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred eEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 344444444333 56666665 455543 3678888865
No 223
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.90 E-value=0.008 Score=69.98 Aligned_cols=271 Identities=11% Similarity=0.052 Sum_probs=153.3
Q ss_pred cCCCEEEEEec-C----CeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE----------CCCc
Q 001202 266 PEQQILAVGTR-R----GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW----------KSRG 330 (1124)
Q Consensus 266 pdg~lLAsGs~-D----gtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs----------~Dg~ 330 (1124)
|+++.+.+... + ++|.++|..+ .+.+.++.. | ..+ .+++||||+.+.++. .++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t-~~vv~~I~v---G-----~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~ 150 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGST-GRILGMTDG---G-----FLP--HPVAAEDGSFFAQASTVFERIARGKRTDY 150 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTT-TEEEEEEEE---C-----SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCC-CEEEEEEEC---C-----CCC--ceEECCCCCEEEEEeccccccccCCCCCE
Confidence 35554444433 2 6999999988 777777763 3 234 799999999888776 4678
Q ss_pred EEEEEcCCCeeeEEeccC--C----cCceeeeEEcCCCCCCcceEEEe-----eeEEEEeCCCCeEEEEecCCcceEEEE
Q 001202 331 LTVWSVSGCRLMSTIRQI--S----LSSISSPIVKPNQDCKYEPLMSG-----TSMMQWDEYGYRLYAIEEGSSERVLIF 399 (1124)
Q Consensus 331 I~vWdv~~~~l~~tl~~h--~----~~~V~s~~~sp~~~~~~~~l~sg-----~~i~~W~~~~~~l~~~~~~~~~~v~~~ 399 (1124)
|.++|..+.+.+.++.-. . ...-..++++|++ +.+..+ .++.+.|..+.++.....-.. .....
T Consensus 151 VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDG----k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-~~~~~ 225 (426)
T 3c75_H 151 VEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDN----KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-CYHIF 225 (426)
T ss_dssp EEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTS----SEEEEEECSSSCEEEEEETTTTEEEEEEECCS-EEEEE
T ss_pred EEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCC----CEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-ceeec
Confidence 999999999888877421 0 1234567899998 444321 256677888877765543211 11111
Q ss_pred ec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCce-EEEEEccCCCEEEEEcCCCeE-
Q 001202 400 SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV-QHVAASKDGMFLAVAGLHGLI- 476 (1124)
Q Consensus 400 s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I-~~va~SpdG~~lAvag~dG~v- 476 (1124)
.. .+..++.+.|+.....+. . ..++..... ..+.....|+ ..+.++++|+.++..+..|.+
T Consensus 226 p~g~~~~v~~~~dG~~~~V~~-~-~~~v~~~~~--------------~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ 289 (426)
T 3c75_H 226 PASPTVFYMNCRDGSLARVDF-A-DGETKVTNT--------------EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIF 289 (426)
T ss_dssp EEETTEEEEEETTSSEEEEEC-C-TTCCEEEEC--------------CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEE
T ss_pred cCCCcEEEEEcCCCCEEEEEC-C-CCcEEEEee--------------eeeccCCCceeeEeeecCCCCEEEEEeCCCcEE
Confidence 11 234455566666554444 1 111110000 0011111121 135789999998888888988
Q ss_pred EEEcCCCcE------EEecCcCceeeeEEEE---EEe--cCCEEEEEEEecC-----CCeEEEEEeeCCCCCCcceEEEe
Q 001202 477 LYDIRQKKW------RVFGDITQEQKIQSKG---LLW--LGKIIVVCNYIDS-----SNTYELLFYPRYHLDQSSLLCRK 540 (1124)
Q Consensus 477 lwd~~sg~w------k~f~~~~~e~~~~v~g---l~W--~~~~liv~~~~~~-----~~~~elrly~~~~ld~~~~l~~~ 540 (1124)
+.|..++.- ........+......+ +.. .++.+.+++.... ....++.+++.. ...++.+.
T Consensus 290 ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~---T~kvv~~I 366 (426)
T 3c75_H 290 QADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE---TGERINKI 366 (426)
T ss_dssp EEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT---TCCEEEEE
T ss_pred EEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC---CCeEEEEE
Confidence 999866543 2211111111111111 333 3456666544321 134678888874 22344454
Q ss_pred ecCCcc--EEEEeeCC-EEEEEE-cCCeEEEEEEE
Q 001202 541 SLLAKP--IVMDVYED-YILVTY-RPFDVHIFHVK 571 (1124)
Q Consensus 541 ~l~s~~--l~l~~~~~-~llv~~-~d~~i~l~~~~ 571 (1124)
+++..| +.+++.+. .+++.. .++++.+++..
T Consensus 367 ~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 367 ELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp EEEEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred ECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence 444433 55677777 666665 48899998753
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.89 E-value=0.0081 Score=68.38 Aligned_cols=251 Identities=10% Similarity=0.027 Sum_probs=130.1
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEec
Q 001202 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1124)
Q Consensus 267 dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~ 346 (1124)
++..+.+++.+|.|..+|.++ ++.+-........ ...++ . ++..+.+++.++.+..+|..+++.+....
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~~----~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~ 170 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSD-GTVAWQTKVAGEA----LSRPV----V--SDGLVLIHTSNGQLQALNEADGAVKWTVN 170 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTT-CCEEEEEECSSCC----CSCCE----E--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCC-CCEEEEEeCCCce----EcCCE----E--ECCEEEEEcCCCeEEEEECCCCcEEEEEe
Confidence 456777888999999999987 6655544421100 11222 1 24577788889999999999888777665
Q ss_pred cCCcCc----eeeeEEcCCCCCCcceEEEe--eeEEEEeCCCCeEEEEec-CCcc------eE--EEEec---cceEEee
Q 001202 347 QISLSS----ISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEE-GSSE------RV--LIFSF---GKCCLNR 408 (1124)
Q Consensus 347 ~h~~~~----V~s~~~sp~~~~~~~~l~sg--~~i~~W~~~~~~l~~~~~-~~~~------~v--~~~s~---~k~~~s~ 408 (1124)
...... ...+... ++ ..++.. ..+..++..+++..-... +... ++ ....+ +..+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~-~~----~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~ 245 (376)
T 3q7m_A 171 LDMPSLSLRGESAPTTA-FG----AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFAL 245 (376)
T ss_dssp CCC-----CCCCCCEEE-TT----EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEE
T ss_pred CCCCceeecCCCCcEEE-CC----EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEE
Confidence 421100 0122221 11 222221 156777776555433222 1100 00 00000 2333344
Q ss_pred ccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE-EEEcCCCc--E
Q 001202 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--W 485 (1124)
Q Consensus 409 s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v-lwd~~sg~--w 485 (1124)
+.++.+..++..+++ ..|..- ......... ++..+.+++.+|.+ .+|..+|+ |
T Consensus 246 ~~~g~l~~~d~~tG~-------------~~w~~~---------~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w 301 (376)
T 3q7m_A 246 AYNGNLTALDLRSGQ-------------IMWKRE---------LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLW 301 (376)
T ss_dssp CTTSCEEEEETTTCC-------------EEEEEC---------CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEE
T ss_pred ecCcEEEEEECCCCc-------------EEeecc---------CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 444444444433322 234321 011223333 46677788888888 99999886 5
Q ss_pred EEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEeecCCccEE--EEeeCCEEEEEEcCC
Q 001202 486 RVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIV--MDVYEDYILVTYRPF 563 (1124)
Q Consensus 486 k~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~~~ld~~~~l~~~~l~s~~l~--l~~~~~~llv~~~d~ 563 (1124)
+.-.. ... ......-.++.++++. ....|.+++.. +..++++..++...+. ....++.+++.+.++
T Consensus 302 ~~~~~--~~~--~~~~~~~~~~~l~v~~-----~~g~l~~~d~~---tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G 369 (376)
T 3q7m_A 302 TQSDL--LHR--LLTSPVLYNGNLVVGD-----SEGYLHWINVE---DGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDG 369 (376)
T ss_dssp EECTT--TTS--CCCCCEEETTEEEEEC-----TTSEEEEEETT---TCCEEEEEECCTTCBCSCCEEETTEEEEEBTTS
T ss_pred eeccc--CCC--cccCCEEECCEEEEEe-----CCCeEEEEECC---CCcEEEEEecCCCcceeCCEEECCEEEEEeCCC
Confidence 43211 111 0111222456676662 22367777763 3456676666322211 123578888888889
Q ss_pred eEEEEE
Q 001202 564 DVHIFH 569 (1124)
Q Consensus 564 ~i~l~~ 569 (1124)
.+..|+
T Consensus 370 ~l~~~~ 375 (376)
T 3q7m_A 370 TVYSIT 375 (376)
T ss_dssp CEEEEE
T ss_pred EEEEEe
Confidence 888775
No 225
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.87 E-value=0.15 Score=64.47 Aligned_cols=243 Identities=12% Similarity=0.155 Sum_probs=128.8
Q ss_pred eEEEEecCCcEEEEEecCCceEeeeccccc--eec------C-CCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCce
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKID--KEL------G-SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASL 291 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~--~~~------g-h~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~ 291 (1124)
..+...++|.+++. ..++.+..++..+.. ... + ....| ++...++|.+- +|+.++-+..|+..+ +..
T Consensus 313 ~~i~~D~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~-~~~ 389 (795)
T 4a2l_A 313 RSIFMDSQGGMWLG-TYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPIT-QRF 389 (795)
T ss_dssp EEEEECTTSCEEEE-ESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTT-CCE
T ss_pred EEEEEeCCcCEEEE-ECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCC-CcE
Confidence 44555677887764 344556666543321 110 1 23457 88888888754 477777788888765 332
Q ss_pred eEEEeeccCCCC-CCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEecc----CCcCceeeeEEcCCCCCCc
Q 001202 292 IRTVSLYDWGYS-MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ----ISLSSISSPIVKPNQDCKY 366 (1124)
Q Consensus 292 ~~~l~~~~~g~~-~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~----h~~~~V~s~~~sp~~~~~~ 366 (1124)
..+.....+.. .-....|.++...++|+.|..|..++++.+++..+++... +.. .....|.++...+++
T Consensus 390 -~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~~~l~~~~v~~i~~d~~g---- 463 (795)
T 4a2l_A 390 -TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQRNSQLVNENVYAILPDGEG---- 463 (795)
T ss_dssp -EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-ECTTTSCCSCSCEEEEEECSSS----
T ss_pred -EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-eecCCCCcCCCeeEEEEECCCC----
Confidence 22221000000 0024569999999999867778888899999998776432 221 113457777766655
Q ss_pred ceEEEe-eeEEEEeCCCCeEEEEecC------CcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCcccee
Q 001202 367 EPLMSG-TSMMQWDEYGYRLYAIEEG------SSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (1124)
Q Consensus 367 ~~l~sg-~~i~~W~~~~~~l~~~~~~------~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w 439 (1124)
..+++. ..+..|++.+++....... ....|..+.. |...++|.... ..++.+..... .+
T Consensus 464 ~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~---------d~~g~lWigt~--~Gl~~~~~~~~---~~ 529 (795)
T 4a2l_A 464 NLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFR---------DSHKRLWIGGE--EGLSVFKQEGL---DI 529 (795)
T ss_dssp CEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEE---------CTTCCEEEEES--SCEEEEEEETT---EE
T ss_pred CEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEE---------CCCCCEEEEeC--CceEEEeCCCC---eE
Confidence 555432 2566677776654433211 1122332221 11112222111 11222211000 00
Q ss_pred eecc-cceeeccCCCceEEEEEccCCCEEEEEcCCCeEEEEcCCCcEEEec
Q 001202 440 LHLN-LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFG 489 (1124)
Q Consensus 440 ~~~~-~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~vlwd~~sg~wk~f~ 489 (1124)
... .+..-...+..|.++..+++|+..+ |+..|...||..+++++.+.
T Consensus 530 -~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~Gl~~~d~~~~~~~~~~ 578 (795)
T 4a2l_A 530 -QKASILPVSNVTKLFTNCIYEASNGIIWV-GTREGFYCFNEKDKQIKRYN 578 (795)
T ss_dssp -EECCCSCSCGGGGSCEEEEEECTTSCEEE-EESSCEEEEETTTTEEEEEC
T ss_pred -EEecCCCCCCCCCCeeEEEEECCCCCEEE-EeCCCceeECCCCCcEEEeC
Confidence 000 0000011334689999999998555 44458779999999888775
No 226
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.85 E-value=7.8e-06 Score=94.11 Aligned_cols=178 Identities=14% Similarity=0.017 Sum_probs=92.5
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEec
Q 001202 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1124)
Q Consensus 267 dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~ 346 (1124)
++..+++|+.||.|..||..+ ++.+.++.. +++.+..+.++|..+++++.||.+..||..+++.+....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~t-G~~~W~~~~----------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRT-GSIKWTLKE----------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTT-CCEEEEEEC----------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS
T ss_pred eCCEEEEEcCCCEEEEEECCC-CCEEEEecC----------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence 577899999999999999988 777766652 334455566788888888899999999998887666554
Q ss_pred cCCcCce-eeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEecCCcceEEEEec-cceEEeeccCCceeeeEeee
Q 001202 347 QISLSSI-SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIY 421 (1124)
Q Consensus 347 ~h~~~~V-~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~ 421 (1124)
.+....+ .++.+..+ ..+..|. .+..|+..++++......+. ...+.+ +..+..++.++.+..|+..+
T Consensus 77 ~~~~~~~~~sp~~~~~-----~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~~v~~~~~dg~v~a~d~~t 149 (369)
T 2hz6_A 77 FTIPELVQASPCRSSD-----GILYMGKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTSLLYLGRTEYTITMYDTKT 149 (369)
T ss_dssp CCHHHHHTTCSCC----------CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSS
T ss_pred ccCccccccCceEecC-----CEEEEEeCCCEEEEEECCCCcEEEEecCCC--cccccccCCEEEEEecCCEEEEEECCC
Confidence 3211111 11111111 2233332 78899999877654443322 112233 55667777788888887666
Q ss_pred cCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCC---CEEEEEcCCCeE-EEEcCCCc
Q 001202 422 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG---MFLAVAGLHGLI-LYDIRQKK 484 (1124)
Q Consensus 422 ~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG---~~lAvag~dG~v-lwd~~sg~ 484 (1124)
++. .|..- +... ...++++++ ..+++++.+|.+ .||..+|+
T Consensus 150 G~~-------------~W~~~-----~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 150 REL-------------RWNAT-----YFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp SSC-------------CCEEE-----EEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred CCE-------------EEeEe-----cccc----cCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 543 23211 0011 112334432 456778889999 99998886
No 227
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.76 E-value=0.21 Score=63.00 Aligned_cols=375 Identities=11% Similarity=0.075 Sum_probs=188.8
Q ss_pred EEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeCh---HHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecCc
Q 001202 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDS---ESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1124)
Q Consensus 25 v~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~---~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~~ 101 (1124)
+...++|.+.+....+.|.+|+.. ... +..+.... .++ ....+.++...++|. |.++|.+| |.+|+...+.-
T Consensus 220 i~~d~~g~lwigt~~~Gl~~~~~~-~~~-~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~-lWigt~~G-l~~~~~~~~~~ 294 (795)
T 4a2l_A 220 ILQQSPTRIWVATEGAGLFLINPK-TKE-IKNYLHSPSNPKSI-SSNYIRSLAMDSQNR-LWIGTFND-LNIYHEGTDSF 294 (795)
T ss_dssp EEEEETTEEEEEEBSSCEEEEETT-TTE-EEEECCCTTCTTSC-SCSBEEEEEECTTSC-EEEEESSC-EEEEETTTTEE
T ss_pred EEEcCCCCEEEEECCCCeEEEeCC-CCe-EEEeecCCCCcccc-CCCeEEEEEEcCCCC-EEEEeCCh-hheEcCCCCeE
Confidence 444667877765555679999875 322 22222211 111 124467788888876 56677665 77777543321
Q ss_pred eeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecC-CeEEEEecCCcEEEEeccCccccceeeccCCCCccccc
Q 001202 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1124)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~ 180 (1124)
..+....... -.-....|.++..|. ..+.+|+.++-+..+ +.....-..+.
T Consensus 295 ~~~~~~~~~~----------------~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~--~~~~~~~~~~~---------- 346 (795)
T 4a2l_A 295 ASYSSNPVEN----------------GSLSQRSVRSIFMDSQGGMWLGTYFGGLNYY--HPIRNRFKNIR---------- 346 (795)
T ss_dssp EEECCCTTST----------------TSCSSSCEEEEEECTTSCEEEEESSSCEEEE--CGGGGSSEEEC----------
T ss_pred EEEecCCCCC----------------CCCCCCcEEEEEEeCCcCEEEEECCCCeEEe--CCCcccceEEc----------
Confidence 1111100000 001123577877776 468888876666654 32221111000
Q ss_pred cccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccce--ec-C--
Q 001202 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--EL-G-- 255 (1124)
Q Consensus 181 ~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~--~~-g-- 255 (1124)
..+. .+ .-....|.++..+ ++|.+++ +..++.+..++..+.+. .. .
T Consensus 347 ~~~~--~~----------------~l~~~~V~~i~~d----------~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~ 397 (795)
T 4a2l_A 347 NIPY--KN----------------SLSDNVVSCIVED----------KDKNLWI-GTNDGGLNLYNPITQRFTSYTLQED 397 (795)
T ss_dssp CCTT--SS----------------SCSCSSEEEEEEC----------TTSCEEE-EESSSCEEEECTTTCCEEEECCC--
T ss_pred CCCC--CC----------------CCCCCeeEEEEEC----------CCCCEEE-EECCCCeEEEcCCCCcEEEEecCCC
Confidence 0000 00 0012335444443 5566555 33344455555433221 10 0
Q ss_pred ------CCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC
Q 001202 256 ------SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (1124)
Q Consensus 256 ------h~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D 328 (1124)
..+.| ++...+++++|-+|+.++-+..|+..+ ++ ...+.... ..-+...|.++...++|...+...
T Consensus 398 ~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~~~~~~---~~l~~~~v~~i~~d~~g~lwigt~-- 470 (795)
T 4a2l_A 398 ESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VENFNQRN---SQLVNENVYAILPDGEGNLWLGTL-- 470 (795)
T ss_dssp ----CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEEECTTT---SCCSCSCEEEEEECSSSCEEEEES--
T ss_pred CcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEEeecCC---CCcCCCeeEEEEECCCCCEEEEec--
Confidence 13456 888888998666788878899999775 43 22232110 001346799999999998666553
Q ss_pred CcEEEEEcCCCeeeEEec-----cCCcCceeeeEEcCCCCCCcceEEEee-eEEEEeCCCCeEEEEec--C----CcceE
Q 001202 329 RGLTVWSVSGCRLMSTIR-----QISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE--G----SSERV 396 (1124)
Q Consensus 329 g~I~vWdv~~~~l~~tl~-----~h~~~~V~s~~~sp~~~~~~~~l~sg~-~i~~W~~~~~~l~~~~~--~----~~~~v 396 (1124)
+++.+|+..++....... ......|.++...+++ ..+++.. .+..|+..+.+. .... . ....|
T Consensus 471 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g----~lWigt~~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i 545 (795)
T 4a2l_A 471 SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK----RLWIGGEEGLSVFKQEGLDI-QKASILPVSNVTKLFT 545 (795)
T ss_dssp SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC----CEEEEESSCEEEEEEETTEE-EECCCSCSCGGGGSCE
T ss_pred CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC----CEEEEeCCceEEEeCCCCeE-EEecCCCCCCCCCCee
Confidence 579999998775432211 1112456777666665 5554322 455566655554 2110 0 01122
Q ss_pred EEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeE
Q 001202 397 LIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (1124)
Q Consensus 397 ~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~v 476 (1124)
..+. .|....+|-...+ .++.+..... .+........ -.+..|.++..+++|+..+ ++.+|..
T Consensus 546 ~~i~---------~d~~g~lWigT~~--Gl~~~d~~~~---~~~~~~~~~g--l~~~~i~~i~~d~~g~lWi-~t~~Gl~ 608 (795)
T 4a2l_A 546 NCIY---------EASNGIIWVGTRE--GFYCFNEKDK---QIKRYNTTNG--LPNNVVYGILEDSFGRLWL-STNRGIS 608 (795)
T ss_dssp EEEE---------ECTTSCEEEEESS--CEEEEETTTT---EEEEECGGGT--CSCSCEEEEEECTTSCEEE-EETTEEE
T ss_pred EEEE---------ECCCCCEEEEeCC--CceeECCCCC---cEEEeCCCCC--CchhheEEEEECCCCCEEE-EcCCceE
Confidence 2221 1222223322111 2222221110 1111100000 1234588899999997655 4468877
Q ss_pred EEEcCCCcEEEecC
Q 001202 477 LYDIRQKKWRVFGD 490 (1124)
Q Consensus 477 lwd~~sg~wk~f~~ 490 (1124)
.|+..+++++.|..
T Consensus 609 ~~~~~~~~~~~~~~ 622 (795)
T 4a2l_A 609 CFNPETEKFRNFTE 622 (795)
T ss_dssp EEETTTTEEEEECG
T ss_pred EEcCCCCcEEEcCC
Confidence 99999999888753
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.75 E-value=0.0019 Score=80.53 Aligned_cols=83 Identities=13% Similarity=0.105 Sum_probs=57.0
Q ss_pred EEEEccCCCEEEEEecCCe-------------------EEEEEcCCCCceeEEEeeccCC-CCCCCCCCeEEEEECCCCC
Q 001202 261 CASIAPEQQILAVGTRRGV-------------------VELYDLAESASLIRTVSLYDWG-YSMDDTGPVSCIAWTPDNS 320 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~Dgt-------------------V~vwd~~~~~~~~~~l~~~~~g-~~~~h~g~V~~lawSPDG~ 320 (1124)
.++++|+..++.+++.+++ |..+|.++ ++.+-.+...... .......++.......+|+
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T-G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT-GEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC-CceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 6789999999999988874 99999988 7666555421100 0001123333333334776
Q ss_pred ---EEEEEECCCcEEEEEcCCCeeeEE
Q 001202 321 ---AFAVGWKSRGLTVWSVSGCRLMST 344 (1124)
Q Consensus 321 ---~Lasgs~Dg~I~vWdv~~~~l~~t 344 (1124)
.++.++.+|.+.++|..+++++..
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSA 344 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEecc
Confidence 899999999999999999988743
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.43 E-value=0.016 Score=66.11 Aligned_cols=93 Identities=15% Similarity=-0.042 Sum_probs=64.4
Q ss_pred ceEeeecccccee----cCCCCeEEEEEccCCCEEEEEe----------cCCeEEEEEcCCCCceeEEEeeccCC-CCCC
Q 001202 241 GLKLAEFIKIDKE----LGSGDAVCASIAPEQQILAVGT----------RRGVVELYDLAESASLIRTVSLYDWG-YSMD 305 (1124)
Q Consensus 241 ~i~~wd~~~~~~~----~gh~~~v~va~spdg~lLAsGs----------~DgtV~vwd~~~~~~~~~~l~~~~~g-~~~~ 305 (1124)
++.+.|..+.+.. .|.. + .++++||++.+.++. .+++|.+||..+ .+.+.++.+..-+ ...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-~~vv~~I~v~~~~~~~~- 122 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFSV- 122 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEETTSCSCCB-
T ss_pred eEEEEECCCCeEEEEEeCCCC-C-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CCEEEEEECCCcccccc-
Confidence 4455666555433 3433 4 799999999888886 478999999998 8888887643100 000
Q ss_pred CCCCeEEEEECCCCCEEEEEEC--CCcEEE--EEcCC
Q 001202 306 DTGPVSCIAWTPDNSAFAVGWK--SRGLTV--WSVSG 338 (1124)
Q Consensus 306 h~g~V~~lawSPDG~~Lasgs~--Dg~I~v--Wdv~~ 338 (1124)
...-..+++||||++++++.. +..+.+ +|+.+
T Consensus 123 -g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 123 -GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp -SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred -CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 012356999999999998875 357888 98876
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.39 E-value=0.047 Score=61.93 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=63.4
Q ss_pred CCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEecc
Q 001202 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 268 g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~ 347 (1124)
+..+.+++.+|.+..+|..+ ++.+.... .+....+.. ++..+..+..++.+..+|..+++.......
T Consensus 239 ~~~v~~~~~~g~l~~~d~~t-G~~~w~~~----------~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~ 305 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRS-GQIMWKRE----------LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD 305 (376)
T ss_dssp TTEEEEECTTSCEEEEETTT-CCEEEEEC----------CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECT
T ss_pred CCEEEEEecCcEEEEEECCC-CcEEeecc----------CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecc
Confidence 45677778899999999987 65544332 122334333 467888888899999999999887776653
Q ss_pred CCcCceeeeEEcCCCCCCcceEEEee--eEEEEeCCCCeEEEEe
Q 001202 348 ISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIE 389 (1124)
Q Consensus 348 h~~~~V~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l~~~~ 389 (1124)
.......++... ++ ..++... .+..++..++++....
T Consensus 306 ~~~~~~~~~~~~-~~----~l~v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 306 LLHRLLTSPVLY-NG----NLVVGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp TTTSCCCCCEEE-TT----EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cCCCcccCCEEE-CC----EEEEEeCCCeEEEEECCCCcEEEEE
Confidence 212223333332 11 2222211 5777787777665443
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.37 E-value=0.027 Score=69.87 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=47.6
Q ss_pred CeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccC
Q 001202 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI 348 (1124)
Q Consensus 278 gtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h 348 (1124)
|.|..||+.+ ++.+-+.. +..++....++++|..+++|+.||.+++||..+++.+.++.-.
T Consensus 457 g~l~A~D~~t-G~~~W~~~---------~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 457 GRLLAWDPVA-QKAAWSVE---------HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (677)
T ss_dssp EEEEEEETTT-TEEEEEEE---------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cEEEEEeCCC-CcEEeecC---------CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence 7899999988 76665555 2333444556778889999999999999999999999888653
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.35 E-value=0.011 Score=65.59 Aligned_cols=108 Identities=6% Similarity=0.047 Sum_probs=68.0
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCe
Q 001202 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~ 340 (1124)
++.+.+++. +.+|+.++.+..||.+ ++....... ....+.++...++|...+.+ +++..+| .++.
T Consensus 141 ~~~~~~~g~-l~vgt~~~~l~~~d~~--g~~~~~~~~--------~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~ 205 (330)
T 3hxj_A 141 TPIVSEDGT-IYVGSNDNYLYAINPD--GTEKWRFKT--------NDAITSAASIGKDGTIYFGS---DKVYAIN-PDGT 205 (330)
T ss_dssp CCEECTTSC-EEEECTTSEEEEECTT--SCEEEEEEC--------SSCCCSCCEECTTCCEEEES---SSEEEEC-TTSC
T ss_pred eeEEcCCCE-EEEEcCCCEEEEECCC--CCEeEEEec--------CCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCc
Confidence 566677777 5567788999999876 444444431 23446677788888866554 8999999 5555
Q ss_pred eeEEeccCCcCceeeeEEcCCCCCCcceEEEe--eeEEEEeCCCCeEEEE
Q 001202 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAI 388 (1124)
Q Consensus 341 l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg--~~i~~W~~~~~~l~~~ 388 (1124)
........ ...+.++...+++ ..+++. ..+..++..+..++..
T Consensus 206 ~~~~~~~~-~~~~~~~~~~~~g----~l~v~t~~~gl~~~~~~g~~~~~~ 250 (330)
T 3hxj_A 206 EKWNFYAG-YWTVTRPAISEDG----TIYVTSLDGHLYAINPDGTEKWRF 250 (330)
T ss_dssp EEEEECCS-SCCCSCCEECTTS----CEEEEETTTEEEEECTTSCEEEEE
T ss_pred EEEEEccC-CcceeceEECCCC----eEEEEcCCCeEEEECCCCCEeEEe
Confidence 55555443 3457777777665 444432 2555666655555443
No 233
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.32 E-value=0.0035 Score=75.09 Aligned_cols=235 Identities=11% Similarity=0.033 Sum_probs=132.9
Q ss_pred cCCcEEEEEec-CCceEeeecccccee----cCCCCeE-EEEE-c-cCCCEEEEEe------------------cCCeEE
Q 001202 228 SNGQLMSCSVS-KKGLKLAEFIKIDKE----LGSGDAV-CASI-A-PEQQILAVGT------------------RRGVVE 281 (1124)
Q Consensus 228 ~dG~~~~~~~~-d~~i~~wd~~~~~~~----~gh~~~v-~va~-s-pdg~lLAsGs------------------~DgtV~ 281 (1124)
+||++++.+.. +..+...|..+.++. ....... .+++ + |+++++.+++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 57877776554 344667777665532 1222334 7787 5 9999988874 356889
Q ss_pred EEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCC--------------------------------
Q 001202 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-------------------------------- 329 (1124)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg-------------------------------- 329 (1124)
+.|.++ .+...++... +.-.-++.+|||+++++.+.+.
T Consensus 179 vID~~t-~~v~~qI~Vg---------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 179 AVDADK-WEVAWQVLVS---------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp EEETTT-TEEEEEEEES---------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred EEECCC-CeEEEEEEeC---------CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 999887 6666666531 1124478999999999988664
Q ss_pred ------cEEEEEcCC--Cee-eEEeccCCcCceeeeEEcCCCCCCcceEEEee----eEEEEeCCCCe------------
Q 001202 330 ------GLTVWSVSG--CRL-MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYR------------ 384 (1124)
Q Consensus 330 ------~I~vWdv~~--~~l-~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~----~i~~W~~~~~~------------ 384 (1124)
+|.|-|..+ +.. +.++... ....++.++||+ +.+.... ++.+++....+
T Consensus 249 k~~~i~~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDG----k~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~ 322 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDK----KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 322 (595)
T ss_dssp CSEEETTEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTS----SEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGG
T ss_pred CeeEECcEEEEeCcccCCceeEEEEecC--CCceEEEEcCCC----CEEEEeCCCCCeEEEEECcccccccccccCcccc
Confidence 477777766 333 4444321 234568889998 5544322 77777777542
Q ss_pred EEEEecCCcceE-EEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeec-ccceeec-cCCCceEEEEE
Q 001202 385 LYAIEEGSSERV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL-NLPVSYI-SQNWPVQHVAA 460 (1124)
Q Consensus 385 l~~~~~~~~~~v-~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~-~~p~~~~-~~~~~I~~va~ 460 (1124)
+.....-..+.. .+|+. +...++.-.|+.+..|++..+.. .+.|+. .++.+ +++..|. +|+..-....+
T Consensus 323 v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~---~~~g~~----~~~vi~kidV~yqpGh~~~~~g~t~ 395 (595)
T 1fwx_A 323 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIR---AYAGEK----VDPIKDKLDVHYQPGHLKTVMGETL 395 (595)
T ss_dssp EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHH---HHHTCS----CCCEEEEEECSSCEEEEEETTTTST
T ss_pred eEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhh---hhcccc----cceeEEEeecccccccceeccceEe
Confidence 222222112222 56666 64344566777888888654110 000000 00000 1122222 22111112356
Q ss_pred ccCCCEEEEEcC---CCe-----------EEEEcCCCcE
Q 001202 461 SKDGMFLAVAGL---HGL-----------ILYDIRQKKW 485 (1124)
Q Consensus 461 SpdG~~lAvag~---dG~-----------vlwd~~sg~w 485 (1124)
+|||++|.++.+ |.+ .++|+.+++-
T Consensus 396 ~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 396 DATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp TCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred CCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 899999999865 444 5788866553
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.31 E-value=3.9e-05 Score=88.26 Aligned_cols=176 Identities=11% Similarity=0.014 Sum_probs=79.4
Q ss_pred CCcEEEEEecCCceEeeecccccee---cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCC
Q 001202 229 NGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (1124)
Q Consensus 229 dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~ 304 (1124)
+|..+++++.++.+..||..+++.. .. +.+ +..+.+++.++++++.||.|..||..+ ++.+..+.....+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~~~~~~~-- 82 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLPFTIPEL-- 82 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCCHHHH--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCC-CceeeeeeccCccc--
Confidence 4555666667777777887766542 22 333 555567788888889999999999977 65544433110000
Q ss_pred CCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCC
Q 001202 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (1124)
Q Consensus 305 ~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~ 381 (1124)
....++. + ++..+++|+.|+.+..||..+|+.+.++..++ ...++|++ ..+..+. .+..|+..
T Consensus 83 ~~~sp~~----~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~----~~v~~~~~dg~v~a~d~~ 148 (369)
T 2hz6_A 83 VQASPCR----S-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPST----SLLYLGRTEYTITMYDTK 148 (369)
T ss_dssp HTTCSCC----------CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSS
T ss_pred cccCceE----e-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccC----CEEEEEecCCEEEEEECC
Confidence 0011111 1 44567788889999999999998887776542 12344543 4444443 78889988
Q ss_pred CCeEEEEecCCcceEEEEec----cceEEeeccCCceeeeEeeecC
Q 001202 382 GYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGE 423 (1124)
Q Consensus 382 ~~~l~~~~~~~~~~v~~~s~----~k~~~s~s~d~~v~~w~l~~~~ 423 (1124)
++++.-....+...-..+.. ...+..++.++.+..|+..+++
T Consensus 149 tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 149 TRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp SSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred CCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 77643221110000001111 1345566677777777755443
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.28 E-value=0.04 Score=68.31 Aligned_cols=124 Identities=10% Similarity=0.147 Sum_probs=77.9
Q ss_pred eEEEEEccCC---CEEEEEecCCeEEEEEcCCCCceeEEEeeccCC-------------------------CCCCCCCCe
Q 001202 259 AVCASIAPEQ---QILAVGTRRGVVELYDLAESASLIRTVSLYDWG-------------------------YSMDDTGPV 310 (1124)
Q Consensus 259 ~v~va~spdg---~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g-------------------------~~~~h~g~V 310 (1124)
++.+....+| ..+++++.+|.+.++|..+ ++.+......... ..++..|..
T Consensus 315 p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~ 393 (677)
T 1kb0_A 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTN-GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH 393 (677)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS
T ss_pred cEEEecccCCcEeeEEEEECCCCEEEEEECCC-CCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc
Confidence 3445555688 6899999999999999988 7766555421100 000000000
Q ss_pred --EEEEECCCCCEEEEEECC-------------------------------------------CcEEEEEcCCCeeeEEe
Q 001202 311 --SCIAWTPDNSAFAVGWKS-------------------------------------------RGLTVWSVSGCRLMSTI 345 (1124)
Q Consensus 311 --~~lawSPDG~~Lasgs~D-------------------------------------------g~I~vWdv~~~~l~~tl 345 (1124)
..++++|++..+.+...+ |.|..||+.+++...+.
T Consensus 394 ~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~ 473 (677)
T 1kb0_A 394 NWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSV 473 (677)
T ss_dssp CSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEE
T ss_pred CCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeec
Confidence 257899998888776432 78999999999988877
Q ss_pred ccCCcCceeeeEEcCCCCCCcceEEEee---eEEEEeCCCCeEEEEe
Q 001202 346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE 389 (1124)
Q Consensus 346 ~~h~~~~V~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~ 389 (1124)
... ..+.+..+...+ ..+..|. .+..|+..+++++...
T Consensus 474 ~~~--~~~~~g~~~~~g----~~v~~g~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 474 EHV--SPWNGGTLTTAG----NVVFQGTADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp EES--SSCCCCEEEETT----TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCC--CCCcCcceEeCC----CEEEEECCCCcEEEEECCCCceeeee
Confidence 643 223333344444 4444443 7788888877765544
No 236
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.27 E-value=0.019 Score=71.38 Aligned_cols=62 Identities=6% Similarity=-0.009 Sum_probs=46.9
Q ss_pred CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccC
Q 001202 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI 348 (1124)
Q Consensus 277 DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h 348 (1124)
+|++..||+.+ ++.+-+... ..++..-.++..|..+++|+.||.++.||..+++++.+++..
T Consensus 454 ~g~l~A~D~~t-G~~~W~~~~---------~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 454 SGKLIAWDPVK-QQAAWEVPY---------VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp EEEEEEEETTT-TEEEEEEEE---------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ceeEEEEECCC-CCeEeEccC---------CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 37899999988 776655552 222333356678889999999999999999999998887653
No 237
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.25 E-value=0.37 Score=63.14 Aligned_cols=70 Identities=16% Similarity=0.113 Sum_probs=45.0
Q ss_pred ceEEEEeeCCeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecC------CcEEEEEeC-CCeEEEE
Q 001202 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD------TKLIAVVTS-SLYLHIF 94 (1124)
Q Consensus 22 ~~iv~fS~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPD------g~~Lav~t~-dg~l~i~ 94 (1124)
..|++.+.++.++++++.+.+.+...+ .+ .+....+ .+-.+++.++.+.|. ++.+|+++. |++++|+
T Consensus 514 ~~I~~As~n~~~vvva~g~~l~~fel~-~~-~L~~~~~----~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~ 587 (1158)
T 3ei3_A 514 KNISVASCNSSQVVVAVGRALYYLQIH-PQ-ELRQISH----TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 587 (1158)
T ss_dssp CCCCEEEECSSEEEEEETTEEEEEEEE-TT-EEEEEEE----EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEE
T ss_pred CEEEEEEeCCCEEEEEECCEEEEEEee-CC-ceeeecc----cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEE
Confidence 456555666666666665567666664 22 2222222 112457888888864 479999996 9999999
Q ss_pred Eee
Q 001202 95 KVQ 97 (1124)
Q Consensus 95 ~v~ 97 (1124)
++.
T Consensus 588 sL~ 590 (1158)
T 3ei3_A 588 KLP 590 (1158)
T ss_dssp ETT
T ss_pred ECC
Confidence 986
No 238
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.10 E-value=0.037 Score=68.40 Aligned_cols=115 Identities=17% Similarity=0.058 Sum_probs=72.3
Q ss_pred CCcceEEEEec-CCcEEEEEecCC-----------ceEeeecccccee------cCCCCeE-EEEEccCCCEEEEEec-C
Q 001202 218 LPMRLLFVLYS-NGQLMSCSVSKK-----------GLKLAEFIKIDKE------LGSGDAV-CASIAPEQQILAVGTR-R 277 (1124)
Q Consensus 218 ~~~~~~~~~s~-dG~~~~~~~~d~-----------~i~~wd~~~~~~~------~gh~~~v-~va~spdg~lLAsGs~-D 277 (1124)
|.....+++.+ +|++++.++.+. .+..||..+.+.. ..+.... ++++.++++++++|+. +
T Consensus 185 P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~ 264 (656)
T 1k3i_A 185 PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA 264 (656)
T ss_dssp SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST
T ss_pred CCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCC
Confidence 44445667777 999999987432 3566776654311 1122222 4677899999999984 5
Q ss_pred CeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE-CC-----CcEEEEEcCCCe
Q 001202 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KS-----RGLTVWSVSGCR 340 (1124)
Q Consensus 278 gtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs-~D-----g~I~vWdv~~~~ 340 (1124)
+.+.+||..+ .+... +. ... ....-.+++..|||+.++.|+ .+ ..+.+||..+..
T Consensus 265 ~~v~~yd~~t-~~W~~-~~--~~~----~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 265 KKTSLYDSSS-DSWIP-GP--DMQ----VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp TCEEEEEGGG-TEEEE-CC--CCS----SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred CceEEecCcC-CceeE-CC--CCC----ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 5899999876 43221 21 111 111113456678999999998 44 468999998765
No 239
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.10 E-value=0.052 Score=68.21 Aligned_cols=110 Identities=10% Similarity=0.009 Sum_probs=68.2
Q ss_pred EEEEe-cCCcEEEEEecC-----CceEeeecccc-ceecCCCCe-E-EEEEccCCCEEEEEecC-----CeEEEEEcCCC
Q 001202 223 LFVLY-SNGQLMSCSVSK-----KGLKLAEFIKI-DKELGSGDA-V-CASIAPEQQILAVGTRR-----GVVELYDLAES 288 (1124)
Q Consensus 223 ~~~~s-~dG~~~~~~~~d-----~~i~~wd~~~~-~~~~gh~~~-v-~va~spdg~lLAsGs~D-----gtV~vwd~~~~ 288 (1124)
...++ |||+.++...+. .++.++|..++ +....+-.. . .++|+|||+.|+....| ..|.++++.+.
T Consensus 178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~ 257 (751)
T 2xe4_A 178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKL 257 (751)
T ss_dssp EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSC
T ss_pred eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCC
Confidence 45667 788776655432 24777887776 532221112 2 67999999988888776 25777777652
Q ss_pred Cce-eEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC---CcEEEEEcCCC
Q 001202 289 ASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGC 339 (1124)
Q Consensus 289 ~~~-~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D---g~I~vWdv~~~ 339 (1124)
... ...+. + .+......+.|||||++|+..+.+ ..|.++|+.++
T Consensus 258 ~~~~~lv~~----~---~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 258 QSEDVCLYE----E---HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp GGGCEEEEE----C---CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred chhcEEEEe----c---CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 211 22222 1 123446788999999988866533 35777888764
No 240
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.03 E-value=0.2 Score=58.02 Aligned_cols=66 Identities=23% Similarity=0.246 Sum_probs=43.8
Q ss_pred eEEEEEccCCCEEEEEec-CCeEEEEEcCCCC--ceeEEEeeccCCCC--CCC------CCCeEEEEECCCCCEEEEEE
Q 001202 259 AVCASIAPEQQILAVGTR-RGVVELYDLAESA--SLIRTVSLYDWGYS--MDD------TGPVSCIAWTPDNSAFAVGW 326 (1124)
Q Consensus 259 ~v~va~spdg~lLAsGs~-DgtV~vwd~~~~~--~~~~~l~~~~~g~~--~~h------~g~V~~lawSPDG~~Lasgs 326 (1124)
+..+.+||||++|-++.. .++|.+||+.+.+ +.+..+..- |.. ..| .+.-..+++||||++|.++.
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tG--G~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLG--GIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECB--TTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeC--CeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 338899999998877765 6899999997533 333344321 100 001 11247899999999999887
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.00 E-value=0.011 Score=70.95 Aligned_cols=69 Identities=16% Similarity=0.302 Sum_probs=50.2
Q ss_pred EEEEEccCCCEEEE-EecCCeEEEEEcCCCCc------------eeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE
Q 001202 260 VCASIAPEQQILAV-GTRRGVVELYDLAESAS------------LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (1124)
Q Consensus 260 v~va~spdg~lLAs-Gs~DgtV~vwd~~~~~~------------~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs 326 (1124)
-++.++|||+++.+ +..+.+|.++|+++ .. ....+. .| . .-..++|+|||....+..
T Consensus 280 hGv~~sPDGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~~~v~~~v~---vG-----~-gP~h~aF~~dG~aY~t~~ 349 (595)
T 1fwx_A 280 HGCNMAPDKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPRSAVVAEPE---LG-----L-GPLHTAFDGRGNAYTSLF 349 (595)
T ss_dssp CCEEECTTSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGGGGEEECCB---CC-----S-CEEEEEECTTSEEEEEET
T ss_pred eEEEEcCCCCEEEEeCCCCCeEEEEECcc-cccccccccCcccceEEEcC---CC-----C-CcceEEECCCCeEEEEEe
Confidence 37999999997555 45678999999985 21 111111 12 2 358899999996666777
Q ss_pred CCCcEEEEEcCC
Q 001202 327 KSRGLTVWSVSG 338 (1124)
Q Consensus 327 ~Dg~I~vWdv~~ 338 (1124)
-|+.|.+||+..
T Consensus 350 ldsqV~kwdi~~ 361 (595)
T 1fwx_A 350 LDSQVVKWNIED 361 (595)
T ss_dssp TTTEEEEEEHHH
T ss_pred cCCcEEEEEhhH
Confidence 899999999976
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=96.83 E-value=0.7 Score=49.35 Aligned_cols=94 Identities=11% Similarity=0.078 Sum_probs=58.1
Q ss_pred CeEEEEEccCCCEE-EEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEc
Q 001202 258 DAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1124)
Q Consensus 258 ~~v~va~spdg~lL-AsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv 336 (1124)
.+..++++|++..| ++-...+.|.+++.+. ......+. + .+.-..++.. ++...++.+.++.|.++|.
T Consensus 168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~----~-----~~~P~gi~~d-~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLE----G-----LQYPFAVTSY-GKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEE----C-----CCSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred CCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEec----C-----CCCceEEEEe-CCEEEEEECCCCeEEEEeC
Confidence 44589999986654 5555668999999864 32222222 1 1112455543 3444455556689999999
Q ss_pred CCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 337 SGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 337 ~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
.+++.+.++.-........+++.|++
T Consensus 237 ~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 237 AISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp TTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred CCCCceEEEccccccccceeeecCcc
Confidence 99888888764322235667777765
No 243
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.71 E-value=2.2 Score=53.46 Aligned_cols=259 Identities=11% Similarity=0.035 Sum_probs=129.9
Q ss_pred eEEEEecCCcEEEEEecCCceEeeecccccee------cCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEE
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRT 294 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~------~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~ 294 (1124)
..++..++|++++. ..++.+..++..+.... ......| ++...+++.+.+ |+.++-+..|+..+ ++ ...
T Consensus 366 ~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~-~~-~~~ 441 (781)
T 3v9f_A 366 SSVCDDGQGKLWIG-TDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRL-KK-FQI 441 (781)
T ss_dssp EEEEECTTSCEEEE-EBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSS-CE-EEE
T ss_pred EEEEEcCCCCEEEE-eCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCC-Cc-EEE
Confidence 34444566776654 33444555554432211 1123556 888888887655 66666788887654 32 222
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccC----CcCceeeeEEcCCCCCCcceEE
Q 001202 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI----SLSSISSPIVKPNQDCKYEPLM 370 (1124)
Q Consensus 295 l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h----~~~~V~s~~~sp~~~~~~~~l~ 370 (1124)
+... + .....|.++...++|...+. .. +++..++..++......... ....|.++...+++ ..++
T Consensus 442 ~~~~--~---~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g----~lWi 510 (781)
T 3v9f_A 442 IELE--K---NELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG----RFWI 510 (781)
T ss_dssp CCST--T---TCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC----CEEE
T ss_pred eccC--C---CCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC----CEEE
Confidence 2210 0 13467999999998875554 44 68999998876543222111 02456677666665 5544
Q ss_pred Ee--eeEEEEeCCCCeEEEEecCC---cceEEEEeccceEEeeccCCceeeeEeeecCCeE-EEeecCCCccceeeeccc
Q 001202 371 SG--TSMMQWDEYGYRLYAIEEGS---SERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRL-LVVQSEDTDELKILHLNL 444 (1124)
Q Consensus 371 sg--~~i~~W~~~~~~l~~~~~~~---~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l-~l~~~~~~~~~~w~~~~~ 444 (1124)
+. .-+..+++.+.+.......+ ...|..+. .|..-++|-... ..+ +.+..... .+.....
T Consensus 511 gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~---------~d~~g~lWi~T~--~Glv~~~d~~~~---~~~~~~~ 576 (781)
T 3v9f_A 511 GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIY---------RSSKGQMWLATG--EGLVCFPSARNF---DYQVFQR 576 (781)
T ss_dssp EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEE---------ECTTSCEEEEET--TEEEEESCTTTC---CCEEECG
T ss_pred EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEE---------ECCCCCEEEEEC--CCceEEECCCCC---cEEEccc
Confidence 32 24555666655443322111 11222211 111222332211 222 22211100 0111100
Q ss_pred ceeeccCCCceEEEEEccCCCEEEEEcCCCeEEEEcCCCcEEEecCc--CceeeeEEEEEEec-CCEEEEE
Q 001202 445 PVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDI--TQEQKIQSKGLLWL-GKIIVVC 512 (1124)
Q Consensus 445 p~~~~~~~~~I~~va~SpdG~~lAvag~dG~vlwd~~sg~wk~f~~~--~~e~~~~v~gl~W~-~~~liv~ 512 (1124)
...+ .+..|.++..+++|+. -+++.+|...|+..+++++.|... .+...+...++.-. .+.+.+|
T Consensus 577 ~~gl--~~~~i~~i~~d~~g~l-W~~t~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g 644 (781)
T 3v9f_A 577 KEGL--PNTHIRAISEDKNGNI-WASTNTGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFG 644 (781)
T ss_dssp GGTC--SCCCCCEEEECSSSCE-EEECSSCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEE
T ss_pred cCCC--CCceEEEEEECCCCCE-EEEcCCceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEE
Confidence 0000 1234778899999875 456688977999999998887532 22233444443333 3344444
No 244
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.69 E-value=0.045 Score=68.79 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=61.3
Q ss_pred CCCC-eE-EEEEc-cCCCEEEEEecC-C----eEEEEEcCCCC-ceeE-EEeeccCCCCCCCCCCeEEEEECCCCCEEEE
Q 001202 255 GSGD-AV-CASIA-PEQQILAVGTRR-G----VVELYDLAESA-SLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (1124)
Q Consensus 255 gh~~-~v-~va~s-pdg~lLAsGs~D-g----tV~vwd~~~~~-~~~~-~l~~~~~g~~~~h~g~V~~lawSPDG~~Las 324 (1124)
+|.- .+ ..+|| |||++||.+... | +|+++|+++ + +.+. .+. +....++|||||+.|+.
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~-g~~~l~~~~~-----------~~~~~~~WspDg~~l~y 237 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISD-PSQTIADKVS-----------GTNGEIVWGPDHTSLFY 237 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTC-TTCCCCCCEE-----------EECSCCEECSSTTEEEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCC-CCEeCCcccc-----------CceeeEEEecCCCEEEE
Confidence 4443 55 88999 999999976542 2 599999987 4 3211 111 11346889999998887
Q ss_pred EECCC-----cEEEEEcCCCee--eEEeccCCcCceeeeEEcCCC
Q 001202 325 GWKSR-----GLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 325 gs~Dg-----~I~vWdv~~~~l--~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
...|. .|.++++.++.. ...+.........++.++|++
T Consensus 238 ~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg 282 (751)
T 2xe4_A 238 VTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT 282 (751)
T ss_dssp EEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS
T ss_pred EEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC
Confidence 77652 577788876532 122222112345678899988
No 245
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=96.63 E-value=0.084 Score=61.14 Aligned_cols=207 Identities=14% Similarity=0.080 Sum_probs=113.8
Q ss_pred EEc--cCCCE-EEEEecCCeEEEEEcCCCC---ceeEEEe---ec-cCCCCCCCCCCeEEEEECCCCCEEEEEECC----
Q 001202 263 SIA--PEQQI-LAVGTRRGVVELYDLAESA---SLIRTVS---LY-DWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---- 328 (1124)
Q Consensus 263 a~s--pdg~l-LAsGs~DgtV~vwd~~~~~---~~~~~l~---~~-~~g~~~~h~g~V~~lawSPDG~~Lasgs~D---- 328 (1124)
.++ +++++ ++.|..+++|.|+|+.+.. +..+++. +. +.|. + .-..+..+||| .++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~----s-~Ph~~~~~pdG-i~Vs~~g~~~g~ 161 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGY----S-RLHTVHCGPDA-IYISALGNEEGE 161 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCE----E-EEEEEEECSSC-EEEEEEEETTSC
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCC----C-cccceeECCCe-EEEEcCCCcCCC
Confidence 446 67665 5556678899999997522 3344442 00 1120 1 12457789999 77776665
Q ss_pred --CcEEEEEcCCCeeeEEeccCC-c-CceeeeEEcCCCCCCcceEEEe----------------------eeEEEEeCCC
Q 001202 329 --RGLTVWSVSGCRLMSTIRQIS-L-SSISSPIVKPNQDCKYEPLMSG----------------------TSMMQWDEYG 382 (1124)
Q Consensus 329 --g~I~vWdv~~~~l~~tl~~h~-~-~~V~s~~~sp~~~~~~~~l~sg----------------------~~i~~W~~~~ 382 (1124)
|++.+.|..+.+.+.++.-.. . .--..+.|+|++ +.+++. .++.+|+..+
T Consensus 162 ~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~----~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~ 237 (462)
T 2ece_A 162 GPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN----EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK 237 (462)
T ss_dssp SCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT----TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred CCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC----CEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence 789999999999888886321 1 112346668887 444443 3888999998
Q ss_pred CeEEEEecCC-cceE---EEE--ec-cceEEeec------cCCceeeeEeeecCCeEEEeecCCCcc--ceeeeccccee
Q 001202 383 YRLYAIEEGS-SERV---LIF--SF-GKCCLNRG------VSGMTYARQVIYGEDRLLVVQSEDTDE--LKILHLNLPVS 447 (1124)
Q Consensus 383 ~~l~~~~~~~-~~~v---~~~--s~-~k~~~s~s------~d~~v~~w~l~~~~~~l~l~~~~~~~~--~~w~~~~~p~~ 447 (1124)
+++.....-. .+.. +.| ++ ++.+..++ .++++.+|.... ........-+.+. ..+..-.+|..
T Consensus 238 ~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 238 RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--GKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--TEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--CceeEEEEEeCCCccccccccccccc
Confidence 8877665432 1111 233 55 55554444 344554444321 1110000000000 00000000111
Q ss_pred eccCCCceEEEEEccCCCEEEEEcC-CCeE-EEEcC
Q 001202 448 YISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIR 481 (1124)
Q Consensus 448 ~~~~~~~I~~va~SpdG~~lAvag~-dG~v-lwd~~ 481 (1124)
+.+.......+.+||||++|.++.+ .+.+ +||+.
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 1111123567899999999998876 4667 99985
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.56 E-value=0.18 Score=54.11 Aligned_cols=188 Identities=14% Similarity=0.104 Sum_probs=104.0
Q ss_pred CeE-EEEEccCCCEEEEEecCC--eEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCC-EEEEEECCCcEEE
Q 001202 258 DAV-CASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTV 333 (1124)
Q Consensus 258 ~~v-~va~spdg~lLAsGs~Dg--tV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~-~Lasgs~Dg~I~v 333 (1124)
..+ .+.|+ ++.+..+.+.+| .|+++|+++ ++.+.++.+.. ........++|. ..++.+.++.+.+
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~T-gkv~~~~~l~~---------~~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIES-GKTLQQIELGK---------RYFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTT-CCEEEEEECCT---------TCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCC-CcEEEEEecCC---------ccceeEEEEeCCEEEEEEeeCCEEEE
Confidence 345 78888 778888888877 999999998 88777776321 122222223444 4555667899999
Q ss_pred EEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEE-ee-eEEEEeCCCCeEEEEecCC--cce---EEEEeccceEE
Q 001202 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS-GT-SMMQWDEYGYRLYAIEEGS--SER---VLIFSFGKCCL 406 (1124)
Q Consensus 334 Wdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~s-g~-~i~~W~~~~~~l~~~~~~~--~~~---v~~~s~~k~~~ 406 (1124)
+|..+.+.+.++.-.+. ...+.+++ ...++| |+ ++.++|+++.+......-. ... +-.+.+
T Consensus 112 ~D~~t~~~~~ti~~~~e----G~glt~dg---~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~----- 179 (262)
T 3nol_A 112 WNIRNLRQVRSFNYDGE----GWGLTHND---QYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW----- 179 (262)
T ss_dssp EETTTCCEEEEEECSSC----CCCEEECS---SCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE-----
T ss_pred EECccCcEEEEEECCCC----ceEEecCC---CEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE-----
Confidence 99999999988875321 12233444 134444 22 6777888887766553211 011 111111
Q ss_pred eeccCCceeeeEeeecCCeEEEeecCCCccceeeecc-c-cee--eccCCCceEEEEEccCCCEEEEEcCC
Q 001202 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN-L-PVS--YISQNWPVQHVAASKDGMFLAVAGLH 473 (1124)
Q Consensus 407 s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~-~-p~~--~~~~~~~I~~va~SpdG~~lAvag~d 473 (1124)
.+| ++|.-....+.+.+.......-..|-... + |.. ......-.+.+|++|+++.|.+.|+.
T Consensus 180 ---~~G--~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 180 ---VDG--EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp ---ETT--EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred ---ECC--EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 122 23433333444444443222111111110 1 100 01112346889999999999998854
No 247
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.55 E-value=0.05 Score=59.97 Aligned_cols=283 Identities=13% Similarity=0.038 Sum_probs=127.9
Q ss_pred cCCcEEEEEecCCceEeeecccccee-c--CCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCC
Q 001202 228 SNGQLMSCSVSKKGLKLAEFIKIDKE-L--GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (1124)
Q Consensus 228 ~dG~~~~~~~~d~~i~~wd~~~~~~~-~--gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~ 303 (1124)
.+|.+++ +..++.+..+| .+++.. . .....+ ++.+.+++.+.+ |+.+ +..||. + ++.......
T Consensus 29 ~~g~l~v-~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~-g~~~~~~~~------ 95 (330)
T 3hxj_A 29 KNGTIYL-GSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYF-GSDK--VYAINP-D-GTEKWRFDT------ 95 (330)
T ss_dssp TTSCEEC-SSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECC-SSCE--EEEECC-C-GGGGGGSCC------
T ss_pred cCCeEEE-EcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEE-ecCc--EEEECC-C-CcEEEEEEC------
Confidence 4555443 23344455555 443322 1 112233 666667776544 4444 777764 3 433221110
Q ss_pred CCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEe--eeEEEEeCC
Q 001202 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEY 381 (1124)
Q Consensus 304 ~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg--~~i~~W~~~ 381 (1124)
........... +..+..|+.++++..+|.. +......... ...+.++...+++ ..++.. ..+..++..
T Consensus 96 --~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~-~~~~~~~~~~~~g----~l~vgt~~~~l~~~d~~ 165 (330)
T 3hxj_A 96 --KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTK-KAIYATPIVSEDG----TIYVGSNDNYLYAINPD 165 (330)
T ss_dssp -------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECS-SCCCSCCEECTTS----CEEEECTTSEEEEECTT
T ss_pred --CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCC-CceeeeeEEcCCC----EEEEEcCCCEEEEECCC
Confidence 11111222222 4567778888999999998 5555555433 3345566665555 444432 256677776
Q ss_pred CCeEEEEecCCcceE--EEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEE
Q 001202 382 GYRLYAIEEGSSERV--LIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVA 459 (1124)
Q Consensus 382 ~~~l~~~~~~~~~~v--~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va 459 (1124)
+..++..... ...+ ..++....+..++ +.+..++ ..+ ...|.. ......+.+++
T Consensus 166 g~~~~~~~~~-~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g-------------~~~~~~-------~~~~~~~~~~~ 221 (330)
T 3hxj_A 166 GTEKWRFKTN-DAITSAASIGKDGTIYFGS--DKVYAIN-PDG-------------TEKWNF-------YAGYWTVTRPA 221 (330)
T ss_dssp SCEEEEEECS-SCCCSCCEECTTCCEEEES--SSEEEEC-TTS-------------CEEEEE-------CCSSCCCSCCE
T ss_pred CCEeEEEecC-CCceeeeEEcCCCEEEEEe--CEEEEEC-CCC-------------cEEEEE-------ccCCcceeceE
Confidence 3333332211 1111 1111111111111 2222222 111 112321 11224467788
Q ss_pred EccCCCEEEEEcCCCeE-EEEcCCCcEEEecCcCceeeeEEEEEEec-CCEEEEEEEecCCCeEEEEEeeCCCCCCcceE
Q 001202 460 ASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL-GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLL 537 (1124)
Q Consensus 460 ~SpdG~~lAvag~dG~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~-~~~liv~~~~~~~~~~elrly~~~~ld~~~~l 537 (1124)
++++|...+ ++.+|.+ .+|........+..... . ...+... ++.+.++. ....|..|+. +....
T Consensus 222 ~~~~g~l~v-~t~~~gl~~~~~~g~~~~~~~~~~~---~-~~~~~~~~~g~l~v~t-----~~ggl~~~d~----~g~~~ 287 (330)
T 3hxj_A 222 ISEDGTIYV-TSLDGHLYAINPDGTEKWRFKTGKR---I-ESSPVIGNTDTIYFGS-----YDGHLYAINP----DGTEK 287 (330)
T ss_dssp ECTTSCEEE-EETTTEEEEECTTSCEEEEEECSSC---C-CSCCEECTTSCEEEEC-----TTCEEEEECT----TSCEE
T ss_pred ECCCCeEEE-EcCCCeEEEECCCCCEeEEeeCCCC---c-cccceEcCCCeEEEec-----CCCCEEEECC----CCcEE
Confidence 888886554 5555555 77754433222221110 0 1112223 44555542 2224555643 12345
Q ss_pred EEeecCCccE-EEEe-eCCEEEEEEcCCeEEEEEEE
Q 001202 538 CRKSLLAKPI-VMDV-YEDYILVTYRPFDVHIFHVK 571 (1124)
Q Consensus 538 ~~~~l~s~~l-~l~~-~~~~llv~~~d~~i~l~~~~ 571 (1124)
+...++...+ .+-. .++.+.+.+.+|.+++...+
T Consensus 288 ~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 288 WNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp EEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC-
T ss_pred EEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecc
Confidence 5555543221 1112 34568888889988887655
No 248
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.51 E-value=0.23 Score=53.66 Aligned_cols=114 Identities=11% Similarity=0.061 Sum_probs=72.2
Q ss_pred EEEEccCCCEEEEEec--CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCC
Q 001202 261 CASIAPEQQILAVGTR--RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~--DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~ 338 (1124)
.++|+|++.+.++.+. +++|++.|..+ ++.+.++.+.. + .....+++. +++..++.+.++.+.++|..+
T Consensus 25 Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t-g~v~~~i~l~~------~-~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t 95 (266)
T 2iwa_A 25 GLVYAENDTLFESTGLYGRSSVRQVALQT-GKVENIHKMDD------S-YFGEGLTLL-NEKLYQVVWLKNIGFIYDRRT 95 (266)
T ss_dssp EEEECSTTEEEEEECSTTTCEEEEEETTT-CCEEEEEECCT------T-CCEEEEEEE-TTEEEEEETTCSEEEEEETTT
T ss_pred cEEEeCCCeEEEECCCCCCCEEEEEECCC-CCEEEEEecCC------C-cceEEEEEe-CCEEEEEEecCCEEEEEECCC
Confidence 7899998876666554 67999999998 88777766321 1 112345554 234556667789999999999
Q ss_pred CeeeEEeccCCcCceeeeEEcCCCCCCcceEEE-ee-eEEEEeCCCCeEEEEe
Q 001202 339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS-GT-SMMQWDEYGYRLYAIE 389 (1124)
Q Consensus 339 ~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~s-g~-~i~~W~~~~~~l~~~~ 389 (1124)
.+.+.++.-. .. ....+++++. ..+++ |+ ++.++|+++.+.....
T Consensus 96 ~~v~~~i~~g-~~--~g~glt~Dg~---~l~vs~gs~~l~viD~~t~~v~~~I 142 (266)
T 2iwa_A 96 LSNIKNFTHQ-MK--DGWGLATDGK---ILYGSDGTSILYEIDPHTFKLIKKH 142 (266)
T ss_dssp TEEEEEEECC-SS--SCCEEEECSS---SEEEECSSSEEEEECTTTCCEEEEE
T ss_pred CcEEEEEECC-CC--CeEEEEECCC---EEEEECCCCeEEEEECCCCcEEEEE
Confidence 9988888532 01 1233445551 23333 22 6667777776655443
No 249
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.48 E-value=0.38 Score=53.19 Aligned_cols=97 Identities=11% Similarity=0.095 Sum_probs=57.9
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCC-----CC--------CCCCeEEEEECC-CCCEEEEEE
Q 001202 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS-----MD--------DTGPVSCIAWTP-DNSAFAVGW 326 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~-----~~--------h~g~V~~lawSP-DG~~Lasgs 326 (1124)
+++++++++++.++..++.|..|+.+. +. ...+.... ++. .+ ..+.+..+++.| +|+ |.++.
T Consensus 23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~-~~-~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 23 SFTFDSTNKGFYTSVQDGRVIKYEGPN-SG-FVDFAYAS-PYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CEECCTTCSSEEEECTTSEEEEECCTT-TC-EEEEEESC-TTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred EEEEcCCCCEEEEEcCCCeEEEECCCC-Cc-eEEEeccc-ccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 688899998777888899999998764 33 22232110 000 00 013478999998 565 55555
Q ss_pred CCCcEEEEEcCCCeeeEEec----cCCcCceeeeEEcC-CC
Q 001202 327 KSRGLTVWSVSGCRLMSTIR----QISLSSISSPIVKP-NQ 362 (1124)
Q Consensus 327 ~Dg~I~vWdv~~~~l~~tl~----~h~~~~V~s~~~sp-~~ 362 (1124)
..+.+..+|..++.. ..+. +........+++.+ ++
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G 138 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG 138 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC
Confidence 556788888876542 2221 11123456777877 66
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=96.45 E-value=0.88 Score=48.54 Aligned_cols=123 Identities=10% Similarity=-0.001 Sum_probs=66.1
Q ss_pred CcEEEEEecCCceEeeeccccc--ee--cCCCCeEEEEEccCCC-EEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCC
Q 001202 230 GQLMSCSVSKKGLKLAEFIKID--KE--LGSGDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (1124)
Q Consensus 230 G~~~~~~~~d~~i~~wd~~~~~--~~--~gh~~~v~va~spdg~-lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~ 304 (1124)
|+++++....+.+..++..... .. .+...+..++++|++. +.++-..++.|.+++.+. .. ...+. . .
T Consensus 48 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g-~~-~~~~~--~-~--- 119 (267)
T 1npe_A 48 KVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG-TQ-RRVLF--D-T--- 119 (267)
T ss_dssp TEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CS-CEEEE--C-S---
T ss_pred CEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC-CC-EEEEE--E-C---
Confidence 3344444444455555433221 11 1223455999999755 455555678999999864 22 22222 0 0
Q ss_pred CCCCCeEEEEECCCCCEEEEEEC---CCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 305 DDTGPVSCIAWTPDNSAFAVGWK---SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 305 ~h~g~V~~lawSPDG~~Lasgs~---Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
.......++++|++..|..+.. .+.|.+++..+... ..+..........++++|++
T Consensus 120 -~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~~~~~~~~P~gia~d~~~ 178 (267)
T 1npe_A 120 -GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGLPNGLTFDAFS 178 (267)
T ss_dssp -SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECTTCSCEEEEEEETTT
T ss_pred -CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EEEEECCCCCCcEEEEcCCC
Confidence 1234588999997665555443 36788888876432 22211112345566666654
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.44 E-value=0.45 Score=58.74 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=57.0
Q ss_pred EEEEccCCCEEEEEecCCe-------------------EEEEEcCCCCceeEEEeeccCC-CCCCCCCCeEEEEECCCCC
Q 001202 261 CASIAPEQQILAVGTRRGV-------------------VELYDLAESASLIRTVSLYDWG-YSMDDTGPVSCIAWTPDNS 320 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~Dgt-------------------V~vwd~~~~~~~~~~l~~~~~g-~~~~h~g~V~~lawSPDG~ 320 (1124)
.++++|+..++.+++.++. |..+|.++ ++.+-........ ....-..+........||+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t-G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT-GKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC-CceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 5789999889999887774 88889887 7666555422100 0000113333334445786
Q ss_pred ---EEEEEECCCcEEEEEcCCCeeeEEe
Q 001202 321 ---AFAVGWKSRGLTVWSVSGCRLMSTI 345 (1124)
Q Consensus 321 ---~Lasgs~Dg~I~vWdv~~~~l~~tl 345 (1124)
.+++++.+|.+.++|..+++++...
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 7899999999999999999887544
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.33 E-value=0.74 Score=49.66 Aligned_cols=150 Identities=11% Similarity=0.009 Sum_probs=91.7
Q ss_pred EEEEecCCcEEEEEec--CCceEeeecccccee----c-CCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEE
Q 001202 223 LFVLYSNGQLMSCSVS--KKGLKLAEFIKIDKE----L-GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~--d~~i~~wd~~~~~~~----~-gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l 295 (1124)
-+++++||+++++++. +..+...|..+++.. . .+..+..+++.. +++.++...++.+.++|.++ .+.+.++
T Consensus 25 Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t-~~v~~~i 102 (266)
T 2iwa_A 25 GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRT-LSNIKNF 102 (266)
T ss_dssp EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTT-TEEEEEE
T ss_pred cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCC-CcEEEEE
Confidence 3455678877776653 577888888877644 1 222223455542 35566667789999999987 7777777
Q ss_pred eeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCC----cCceeeeEEcCCCCCCcceEEE
Q 001202 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS----LSSISSPIVKPNQDCKYEPLMS 371 (1124)
Q Consensus 296 ~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~----~~~V~s~~~sp~~~~~~~~l~s 371 (1124)
... . ..| ...+|||+.+.++..++.|.+.|..+.+...++.-.. ....+.+.+. ++ ...+.
T Consensus 103 ~~g-~-----~~g----~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg----~lyvn 167 (266)
T 2iwa_A 103 THQ-M-----KDG----WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG----EVWAN 167 (266)
T ss_dssp ECC-S-----SSC----CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT----EEEEE
T ss_pred ECC-C-----CCe----EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC----EEEEe
Confidence 622 0 111 3356789888777778999999999988777765310 0123344444 33 33332
Q ss_pred e---eeEEEEeCCCCeEEEEe
Q 001202 372 G---TSMMQWDEYGYRLYAIE 389 (1124)
Q Consensus 372 g---~~i~~W~~~~~~l~~~~ 389 (1124)
. ..+..-|+.+++.....
T Consensus 168 ~~~~~~V~vID~~tg~V~~~I 188 (266)
T 2iwa_A 168 IWQTDCIARISAKDGTLLGWI 188 (266)
T ss_dssp ETTSSEEEEEETTTCCEEEEE
T ss_pred cCCCCeEEEEECCCCcEEEEE
Confidence 1 15555666666655443
No 253
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.33 E-value=0.11 Score=64.12 Aligned_cols=72 Identities=13% Similarity=0.169 Sum_probs=50.1
Q ss_pred EEEEcc-CCCEEEEEecCC-----------eEEEEEcCCCCce--eEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE
Q 001202 261 CASIAP-EQQILAVGTRRG-----------VVELYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (1124)
Q Consensus 261 ~va~sp-dg~lLAsGs~Dg-----------tV~vwd~~~~~~~--~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs 326 (1124)
.+++.| ++++++.|+.++ .+.+||..+ .+. +..+. . .+.....++++.+||+.++.|+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t-~~w~~~~~~~----~---~~~~~~~~~~~~~~g~lyv~GG 261 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST-GIVSDRTVTV----T---KHDMFCPGISMDGNGQIVVTGG 261 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT-CCBCCCEEEE----C---SCCCSSCEEEECTTSCEEEECS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCC-CcEEeCcccC----C---CCCCccccccCCCCCCEEEeCC
Confidence 566677 899999988653 588899876 432 22222 0 1333445678899999999998
Q ss_pred C-CCcEEEEEcCCCe
Q 001202 327 K-SRGLTVWSVSGCR 340 (1124)
Q Consensus 327 ~-Dg~I~vWdv~~~~ 340 (1124)
. ++.+.+||..++.
T Consensus 262 ~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 262 NDAKKTSLYDSSSDS 276 (656)
T ss_dssp SSTTCEEEEEGGGTE
T ss_pred CCCCceEEecCcCCc
Confidence 5 4689999998764
No 254
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.27 E-value=1.4 Score=46.76 Aligned_cols=105 Identities=10% Similarity=0.051 Sum_probs=70.9
Q ss_pred CCcEEEEEecC--CceEeeeccccceec-----CCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCC
Q 001202 229 NGQLMSCSVSK--KGLKLAEFIKIDKEL-----GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (1124)
Q Consensus 229 dG~~~~~~~~d--~~i~~wd~~~~~~~~-----gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g 301 (1124)
+|+++.+++.. ..++..|..+++... ++--+..+++. .+++......++.+.+||.++ .+.+.++...
T Consensus 30 ~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~t-l~~~~ti~~~--- 104 (243)
T 3mbr_X 30 RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLAT-LTPRARFRYP--- 104 (243)
T ss_dssp TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTT-TEEEEEEECS---
T ss_pred CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCc-CcEEEEEeCC---
Confidence 46777766654 478888888776541 11112234443 345666677899999999988 7888887731
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEec
Q 001202 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1124)
Q Consensus 302 ~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~ 346 (1124)
-.| ..++ +||..|.++..++.|.++|..+.+...++.
T Consensus 105 ----~~G--wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~ 141 (243)
T 3mbr_X 105 ----GEG--WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIK 141 (243)
T ss_dssp ----SCC--CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred ----CCc--eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEE
Confidence 122 3343 678877777778899999999988777664
No 255
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.21 E-value=0.5 Score=50.75 Aligned_cols=105 Identities=10% Similarity=0.047 Sum_probs=72.8
Q ss_pred CCcEEEEEecCCceEeeeccccceecC-CCCe---EEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCC
Q 001202 229 NGQLMSCSVSKKGLKLAEFIKIDKELG-SGDA---VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (1124)
Q Consensus 229 dG~~~~~~~~d~~i~~wd~~~~~~~~g-h~~~---v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~ 304 (1124)
+++++.+++.++.++..|..+++.... -... ..+++.. +++......++.+.+||.++ .+.+.++...
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~T-l~~~~ti~~~------ 135 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMP-PQRERTTRYS------ 135 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTT-TEEEEEEECS------
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCc-CcEEEEEeCC------
Confidence 577888888888888888877654311 1111 1345443 35555667899999999988 8888887732
Q ss_pred CCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEec
Q 001202 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1124)
Q Consensus 305 ~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~ 346 (1124)
-.| ..++ +||+.|..+..++.|.++|..+.+...++.
T Consensus 136 -~eG--wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~ 172 (268)
T 3nok_A 136 -GEG--WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQ 172 (268)
T ss_dssp -SCC--CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred -Cce--eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEE
Confidence 112 2333 688988888778899999999988777664
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.01 E-value=1.8 Score=47.57 Aligned_cols=110 Identities=4% Similarity=-0.073 Sum_probs=62.5
Q ss_pred EEEEecCCc-EEEEEecCCceEeeecccc-----ceecCCCCeEEEEEccCCCEEEEEec----------CCeEEEEEcC
Q 001202 223 LFVLYSNGQ-LMSCSVSKKGLKLAEFIKI-----DKELGSGDAVCASIAPEQQILAVGTR----------RGVVELYDLA 286 (1124)
Q Consensus 223 ~~~~s~dG~-~~~~~~~d~~i~~wd~~~~-----~~~~gh~~~v~va~spdg~lLAsGs~----------DgtV~vwd~~ 286 (1124)
-+++++||+ ++++....+.+..++.... +.......+-.+++.++|.+.++... .+.|..++.+
T Consensus 189 gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~gP~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 189 GAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSSEEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCCCCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC
Confidence 467778887 4444455566766654421 11111112447899999987666544 3556666643
Q ss_pred CCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001202 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1124)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~ 339 (1124)
++.+..+.... |. .-..+.++++ .+|+..++...++.|.++++...
T Consensus 269 --G~~~~~~~~~~-g~---~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 269 --GNILEVIPLPP-PF---AGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp --SCEEEEEECCT-TT---TTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred --CCEEEEEECCC-CC---ccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 66666655221 10 1234666666 46766666667788888887543
No 257
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.94 E-value=2.7 Score=46.51 Aligned_cols=122 Identities=8% Similarity=0.115 Sum_probs=70.8
Q ss_pred CCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEE
Q 001202 255 GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (1124)
Q Consensus 255 gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~v 333 (1124)
++...+ .++++|+++++++|...+..+-+|- .+.....+.. + ....+..++++|+|..+++ +.+|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~~---~----~~~~~~~~~~~~~g~~~~~-~~~G~~~~ 229 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHNR---T----TSRRLHNMGFTPDGRLWMI-VNGGKIAF 229 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEEC---C----SSSCEEEEEECTTSCEEEE-ETTTEEEE
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECCC---C----CCCccceeEECCCCCEEEE-eCCceEEE
Confidence 334456 8999999999888754443333332 1232333321 2 4566899999999986654 45677777
Q ss_pred EEcCCCeeeEEeccC---CcCceeeeEEcCCCCCCcceEEEee-eEEEEeCCCCeEEEEec
Q 001202 334 WSVSGCRLMSTIRQI---SLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE 390 (1124)
Q Consensus 334 Wdv~~~~l~~tl~~h---~~~~V~s~~~sp~~~~~~~~l~sg~-~i~~W~~~~~~l~~~~~ 390 (1124)
++..++.....+... ....+.++++.+++ ..++.|. ..+.++.++++-|....
T Consensus 230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~----~~~~~g~~g~i~~S~DgG~tW~~~~ 286 (327)
T 2xbg_A 230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPN----EVWLAGGAGALLCSQDGGQTWQQDV 286 (327)
T ss_dssp EETTEEEEECCCBCTTSSCCSCEEEEEESSSS----CEEEEESTTCEEEESSTTSSCEECG
T ss_pred ecCCCCCeeEeccCCcccCCcceEEEEecCCC----EEEEEeCCCeEEEeCCCCcccEEcC
Confidence 654444433333211 12347777787765 5555544 33466666676666543
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=95.89 E-value=0.3 Score=52.46 Aligned_cols=111 Identities=12% Similarity=0.074 Sum_probs=74.9
Q ss_pred CcEEEEEecCCceEeeecccccee---cCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCC
Q 001202 230 GQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (1124)
Q Consensus 230 G~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h 306 (1124)
++++.++-.++.+.++|..+.+.. ..-... ..+.+|++.|..+..+++|.++|..+ .+.+.++.....| ..
T Consensus 106 ~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG--wGLt~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g---~~ 179 (268)
T 3nok_A 106 ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG--WGLCYWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRG---QP 179 (268)
T ss_dssp SCEEEEESSSCEEEEEETTTTEEEEEEECSSCC--CCEEEETTEEEEECSSSEEEEECTTT-CCEEEEEECEETT---EE
T ss_pred CEEEEEEccCCEEEEEECCcCcEEEEEeCCCce--eEEecCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCC---cc
Confidence 455555556777777787766543 111111 22336677776666688999999887 6777777654322 11
Q ss_pred CCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEecc
Q 001202 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 307 ~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~ 347 (1124)
-..++.+.|. ||+..|..+.+..|.+-|..+++.+.++.-
T Consensus 180 v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 180 VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 2345778887 898888888889999999999998887753
No 259
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.85 E-value=1.7 Score=53.52 Aligned_cols=72 Identities=15% Similarity=0.088 Sum_probs=44.7
Q ss_pred CCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCC-CCeEEEEECCCCCEEEEEEC------CCcEEEEEcCCCe
Q 001202 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT-GPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCR 340 (1124)
Q Consensus 268 g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~-g~V~~lawSPDG~~Lasgs~------Dg~I~vWdv~~~~ 340 (1124)
+..|.+++.||.|..+|..+ ++.+-.............. .++. .+|. ++++.. +|.|..+|..+++
T Consensus 117 ~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~P~v-----~~~~-v~vg~~~~~~~~~g~v~a~D~~tG~ 189 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKT-GKAIWSQQTTDPAKPYSITGAPRV-----VKGK-VIIGNGGAEYGVRGFVSAYDADTGK 189 (668)
T ss_dssp BTEEEEECTTSEEEEEETTT-CCEEEEEECSCTTSSCBCCSCCEE-----ETTE-EEECCBCTTTCCBCEEEEEETTTCC
T ss_pred CCEEEEEcCCCEEEEEECCC-CCEeeeeccCCCCCcceecCCCEE-----ECCE-EEEeCCCCCcCCCCEEEEEECCCCc
Confidence 55788888999999999988 7766555532110000011 1111 1444 444432 5899999999998
Q ss_pred eeEEec
Q 001202 341 LMSTIR 346 (1124)
Q Consensus 341 l~~tl~ 346 (1124)
++.++.
T Consensus 190 ~~W~~~ 195 (668)
T 1kv9_A 190 LAWRFY 195 (668)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 887764
No 260
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.85 E-value=2.7 Score=45.79 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=48.2
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCc--EEEEEcCC
Q 001202 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG--LTVWSVSG 338 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~--I~vWdv~~ 338 (1124)
.++++++++++++-..++.|..|+.+. +....+. -.+....++++|||+.+++....+. |..++..+
T Consensus 36 gia~~~~g~lyv~d~~~~~I~~~d~~g--~~~~~~~---------~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 36 NLASAPDGTIFVTNHEVGEIVSITPDG--NQQIHAT---------VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTC--CEEEEEE---------CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred eEEECCCCCEEEEeCCCCeEEEECCCC--ceEEEEe---------CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC
Confidence 788999999877777888988888653 3333333 1245789999999997666554333 55666666
Q ss_pred Cee
Q 001202 339 CRL 341 (1124)
Q Consensus 339 ~~l 341 (1124)
+..
T Consensus 105 g~~ 107 (306)
T 2p4o_A 105 GTV 107 (306)
T ss_dssp SCE
T ss_pred CeE
Confidence 654
No 261
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.34 E-value=8.5 Score=48.02 Aligned_cols=212 Identities=13% Similarity=0.077 Sum_probs=108.9
Q ss_pred CCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccC--CCCCCCCCCeEEEEECCCCCEEEEEECCCcEEE
Q 001202 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW--GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (1124)
Q Consensus 257 ~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~--g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~v 333 (1124)
...| ++...++|. |=+|+.++-|..|+... .. ...+..... ....-....|.++...++|... .|..++++..
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~ 387 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAP-PT-FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINV 387 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSC-CS-CEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCC-Cc-ceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEE
Confidence 3456 888888886 44566777788888764 32 222221000 0000123569999998888754 5666788999
Q ss_pred EEcCCCeeeEEec--cCCcCceeeeEEcCCCCCCcceEEEe--eeEEEEeCCCCeEEEEecC--CcceEEEEeccceEEe
Q 001202 334 WSVSGCRLMSTIR--QISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEG--SSERVLIFSFGKCCLN 407 (1124)
Q Consensus 334 Wdv~~~~l~~tl~--~h~~~~V~s~~~sp~~~~~~~~l~sg--~~i~~W~~~~~~l~~~~~~--~~~~v~~~s~~k~~~s 407 (1124)
|+..++....-.. ......|.++...+++ ..++.. ..+..++..+++....... ....|.++..
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g----~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~------ 457 (781)
T 3v9f_A 388 FENGKRVAIYNKENRELLSNSVLCSLKDSEG----NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYE------ 457 (781)
T ss_dssp EETTEEEEECC-----CCCSBEEEEEECTTS----CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEE------
T ss_pred EECCCCeEEEccCCCCCCCcceEEEEECCCC----CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEE------
Confidence 9987654321110 1113457777666555 555432 2455566655544322211 1122332221
Q ss_pred eccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEEEccCCCEEEEEcCCCeEEEEcCCCcEEE
Q 001202 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRV 487 (1124)
Q Consensus 408 ~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lAvag~dG~vlwd~~sg~wk~ 487 (1124)
|..-++|.... ..++.+..... .+...............|.+++.+++|+..+....+|...||..+++++.
T Consensus 458 ---d~~g~lwigt~--~Gl~~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~ 529 (781)
T 3v9f_A 458 ---DKNKKIWIGTH--AGVFVIDLASK---KVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRK 529 (781)
T ss_dssp ---CTTSEEEEEET--TEEEEEESSSS---SCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEE
T ss_pred ---CCCCCEEEEEC--CceEEEeCCCC---eEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEE
Confidence 22222333221 23333322110 11111000000011356899999999986654444776699999998888
Q ss_pred ecC
Q 001202 488 FGD 490 (1124)
Q Consensus 488 f~~ 490 (1124)
+..
T Consensus 530 ~~~ 532 (781)
T 3v9f_A 530 FNQ 532 (781)
T ss_dssp ECT
T ss_pred ccC
Confidence 754
No 262
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.25 E-value=3.2 Score=46.56 Aligned_cols=65 Identities=11% Similarity=0.056 Sum_probs=39.8
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCcee---EEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC
Q 001202 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLI---RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1124)
Q Consensus 256 h~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~---~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~ 327 (1124)
|..+..++| .+|.++++....+.|...+++..+... ...... + ..+.+..+++.|||...++.+.
T Consensus 267 ~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~----~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 267 GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--S----GFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--E----SSCCEEEEEECTTSCEEEEECS
T ss_pred CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec--c----cCCCeeEEEECCCCcEEEEEeC
Confidence 334447777 577777777677788777776422211 001110 1 2356899999999987777654
No 263
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.03 E-value=4 Score=49.40 Aligned_cols=78 Identities=14% Similarity=0.104 Sum_probs=47.2
Q ss_pred EEEccCCCE----EEEEecCCeEEEEEcCCCCceeEEEeeccC--CCCCCCCCCeEEEEECCCCCEEEEEE------CCC
Q 001202 262 ASIAPEQQI----LAVGTRRGVVELYDLAESASLIRTVSLYDW--GYSMDDTGPVSCIAWTPDNSAFAVGW------KSR 329 (1124)
Q Consensus 262 va~spdg~l----LAsGs~DgtV~vwd~~~~~~~~~~l~~~~~--g~~~~h~g~V~~lawSPDG~~Lasgs------~Dg 329 (1124)
++++|.+.. |.+++.|+.+..+|..+ ++.+-....... ++. -...++ + .+|. +++++ .+|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~T-G~~~W~~~~~~~~~~~~-~~ssP~--v---~~g~-V~vg~~g~e~g~~g 182 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAET-GETVWKVENSDIKVGST-LTIAPY--V---VKDK-VIIGSSGAELGVRG 182 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTT-CCEEEEEECCCGGGTCB-CCSCCE--E---ETTE-EEECCBCGGGTCCC
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCC-CCEEEeecCCCCCccce-eecCCE--E---ECCE-EEEEecccccCCCC
Confidence 456554444 78888999999999988 666554442210 000 011111 1 1554 44444 378
Q ss_pred cEEEEEcCCCeeeEEecc
Q 001202 330 GLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 330 ~I~vWdv~~~~l~~tl~~ 347 (1124)
.|..+|..+++++.++..
T Consensus 183 ~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 183 YLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEEEETTTCCEEEEEES
T ss_pred eEEEEECCCCcEEEEEcC
Confidence 999999999988877654
No 264
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=94.88 E-value=6.8 Score=45.20 Aligned_cols=128 Identities=7% Similarity=0.043 Sum_probs=70.3
Q ss_pred EEEEec--CCcEEEEEecCCceEeeeccccce--e-cCCCCeEEEEEccCCCEEEEEec-CC----eEEEEEcCCCCcee
Q 001202 223 LFVLYS--NGQLMSCSVSKKGLKLAEFIKIDK--E-LGSGDAVCASIAPEQQILAVGTR-RG----VVELYDLAESASLI 292 (1124)
Q Consensus 223 ~~~~s~--dG~~~~~~~~d~~i~~wd~~~~~~--~-~gh~~~v~va~spdg~lLAsGs~-Dg----tV~vwd~~~~~~~~ 292 (1124)
.++++| +|.++++... ..+..++...... + ..-..+..++|+++++.|.++.. ++ .+.+++.+ +...
T Consensus 141 ~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~--g~~~ 217 (430)
T 3tc9_A 141 WLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE--SGFK 217 (430)
T ss_dssp EEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG--GTSC
T ss_pred EEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC--Ccee
Confidence 345554 3555554433 4555555443221 1 22234558999999995444443 22 23333332 3222
Q ss_pred --EEEeeccCCCCCCCCCCeEEEEECC-CCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 293 --RTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 293 --~~l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
..+. . ......++++| +|..+++-..++.|..++..++.............-..++++|++
T Consensus 218 ~~~~l~--~-------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG 281 (430)
T 3tc9_A 218 VITELT--K-------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSG 281 (430)
T ss_dssp SEEEEE--E-------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTS
T ss_pred eeeeec--c-------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCC
Confidence 2332 1 12246788999 777777777788999999987764222221112345678899887
No 265
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=94.83 E-value=0.25 Score=52.96 Aligned_cols=112 Identities=13% Similarity=0.206 Sum_probs=75.3
Q ss_pred CCcEEEEEecCCceEeeecccccee---cCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCC
Q 001202 229 NGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (1124)
Q Consensus 229 dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~ 305 (1124)
+++++.++-.++.+.++|..+.+.. .--... ..+++|++.|.....+++|.++|..+ .+.+.++....-|.
T Consensus 96 g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~--- 169 (262)
T 3nol_A 96 KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPES-LTPVRTITVTAHGE--- 169 (262)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTT-CSEEEEEECEETTE---
T ss_pred CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCC-CeEEEEEEeccCCc---
Confidence 4466666556778888888776543 100111 23346676666655577899999877 67777776432120
Q ss_pred CCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEecc
Q 001202 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 306 h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~ 347 (1124)
.-..++.+.|. ||+..|..+.+..|.+-|..+++.+.++.-
T Consensus 170 ~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 170 ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 11335678887 898888888889999999999998888764
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=94.68 E-value=0.88 Score=48.28 Aligned_cols=147 Identities=10% Similarity=0.171 Sum_probs=90.4
Q ss_pred CCcEEEEEecCCceEeeecccccee---cCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCC
Q 001202 229 NGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (1124)
Q Consensus 229 dG~~~~~~~~d~~i~~wd~~~~~~~---~gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~ 305 (1124)
+++++..+-.++.+.++|..+.+.. ..-..+. .+.+++..|.++..+++|.++|..+ .+.+.++.....|.
T Consensus 74 ~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gw--glt~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~--- 147 (243)
T 3mbr_X 74 RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGW--ALTSDDSHLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGR--- 147 (243)
T ss_dssp TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCC--EEEECSSCEEEECSSSEEEEECTTT-CCEEEEEECEETTE---
T ss_pred CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCce--EEeeCCCEEEEECCCCeEEEEeCCC-CeEEEEEEEccCCc---
Confidence 4666776667788888888776543 1111222 2335666555555688999999887 67777776543221
Q ss_pred CCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcC-ceeeeEEcCCCCCCcceEEEeeeEEEEeCCCCe
Q 001202 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS-SISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYR 384 (1124)
Q Consensus 306 h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~-~V~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~ 384 (1124)
--..++.+.|. +|+..|..|.+..|.+-|..+++.+..+.-.+.. ..... -.+.+ .. -.-+.|++++.+
T Consensus 148 ~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~-~~~~~----~v----lNGIA~d~~~~~ 217 (243)
T 3mbr_X 148 PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADAL-TDSTN----DV----LNGIAFDAEHDR 217 (243)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSC-CCTTS----SC----EEEEEEETTTTE
T ss_pred ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccc-cCCcC----Cc----eEEEEEcCCCCE
Confidence 11346777876 8888888888889999999999988877642110 00000 00110 11 144568888888
Q ss_pred EEEEecC
Q 001202 385 LYAIEEG 391 (1124)
Q Consensus 385 l~~~~~~ 391 (1124)
++++.+-
T Consensus 218 lfVTGK~ 224 (243)
T 3mbr_X 218 LFVTGKR 224 (243)
T ss_dssp EEEEETT
T ss_pred EEEECCC
Confidence 8777643
No 267
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=94.53 E-value=5.9 Score=42.22 Aligned_cols=172 Identities=9% Similarity=0.084 Sum_probs=92.0
Q ss_pred CceEEEEEecCCcceE-EEEecCCcEEEEEecCCceEeeeccccceecCCCCeEEEEEccCCCEEEEEecCCeEEEEEcC
Q 001202 208 SSAIIWLELCLPMRLL-FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1124)
Q Consensus 208 ~~~I~~i~~s~~~~~~-~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~ 286 (1124)
...+..++|+|..+.. ++...+++++........++.+. ..|..+.=.+++.+++.++++.-.++.+.++++.
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~------l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIP------LDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEE------CSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEe------cCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3457778888754433 33334444444333311111111 1233454488888999876766577899999988
Q ss_pred CCCceeEEEeeccCCC-CCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC---eeeEEeccCCcCceeeeEEcCCC
Q 001202 287 ESASLIRTVSLYDWGY-SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 287 ~~~~~~~~l~~~~~g~-~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~---~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
..+. +..+.....+. ..........|+|+|+++.|.++.+.....||.+.+- ..+..+.. .++...
T Consensus 100 ~~~~-i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~--------~~~~~~- 169 (255)
T 3qqz_A 100 PNSE-VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKD--------KALQRQ- 169 (255)
T ss_dssp TTCC-EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEEC--------HHHHHT-
T ss_pred CCCe-eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecc--------hhhccc-
Confidence 7443 22122111111 1123455789999999988888887766677776531 00111100 000000
Q ss_pred CCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEec
Q 001202 363 DCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF 401 (1124)
Q Consensus 363 ~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~ 401 (1124)
..+...+.+..++.+++++..... ...++.++.
T Consensus 170 -----~~~~d~S~l~~dp~tg~lliLS~~-s~~L~~~d~ 202 (255)
T 3qqz_A 170 -----FTLDDVSGAEFNQQKNTLLVLSHE-SRALQEVTL 202 (255)
T ss_dssp -----CCSSCCCEEEEETTTTEEEEEETT-TTEEEEECT
T ss_pred -----cccCCceeEEEcCCCCeEEEEECC-CCeEEEEcC
Confidence 001112556678888888877643 455566655
No 268
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.40 E-value=3.5 Score=49.65 Aligned_cols=61 Identities=8% Similarity=-0.093 Sum_probs=41.7
Q ss_pred CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEecc
Q 001202 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 277 DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~ 347 (1124)
+|.|..||..+ ++.+-+... ..++........|..++.++.||.+.+||..+++++.++..
T Consensus 443 ~g~l~a~D~~t-G~~~W~~~~---------~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 443 MGQIRAFDLTT-GKAKWTKWE---------KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp CEEEEEECTTT-CCEEEEEEE---------SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCeEEEEECCC-CCEEEEecC---------CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 47888888887 665555442 11222222233566777799999999999999998887764
No 269
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.35 E-value=8.3 Score=46.30 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=26.5
Q ss_pred eEEEEEccCCC---EEEEEecCCeEEEEEcCCCCceeEEEe
Q 001202 259 AVCASIAPEQQ---ILAVGTRRGVVELYDLAESASLIRTVS 296 (1124)
Q Consensus 259 ~v~va~spdg~---lLAsGs~DgtV~vwd~~~~~~~~~~l~ 296 (1124)
++-+...++|+ .++.++.+|.+.+.|..+ ++.+....
T Consensus 304 p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~~w~~~ 343 (571)
T 2ad6_A 304 MVLTDQPVNGKMTPLLSHIDRNGILYTLNREN-GNLIVAEK 343 (571)
T ss_dssp CEEEEEEETTEEEEEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred CEEEecccCCcEEEEEEEeCCCcEEEEEECCC-CCEEeeec
Confidence 33344446784 678899999999999987 76665544
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=94.31 E-value=7.3 Score=42.30 Aligned_cols=110 Identities=9% Similarity=-0.013 Sum_probs=62.5
Q ss_pred eEEEEecCCcEEEEEecCCceEeeeccccce-ecCCCCeE-EEEEccCCCEEEEEecCC--eEEEEEcCCCCceeEEEee
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-ELGSGDAV-CASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSL 297 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~-~~gh~~~v-~va~spdg~lLAsGs~Dg--tV~vwd~~~~~~~~~~l~~ 297 (1124)
..+++.++|+++++....+.+..++...... ........ .++++++|+++++..... .|..++..+ ++.......
T Consensus 35 egia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~-g~~~~~~~~ 113 (306)
T 2p4o_A 35 ENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GTVETLLTL 113 (306)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SCEEEEEEC
T ss_pred ceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC-CeEEEEEeC
Confidence 3456667888777766667776666443211 11112334 899999999766654432 355556554 443322221
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001202 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~ 339 (1124)
+ .......++..+++..+++-..++.|.++|..++
T Consensus 114 ---~----~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 114 ---P----DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp ---T----TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred ---C----CccccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence 1 1222345555666665665556788888887764
No 271
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=94.14 E-value=20 Score=46.80 Aligned_cols=64 Identities=8% Similarity=0.123 Sum_probs=45.5
Q ss_pred CCEEEEEEEecCC-----CeEEEEEeeCCCCCCcceEEEeecCCccEEEEeeCCEEEEEEcCCeEEEEEEE
Q 001202 506 GKIIVVCNYIDSS-----NTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (1124)
Q Consensus 506 ~~~liv~~~~~~~-----~~~elrly~~~~ld~~~~l~~~~l~s~~l~l~~~~~~llv~~~d~~i~l~~~~ 571 (1124)
..++++|+..... ....|.+|...+ ..-.+++++++..++..+..++++++++. ...+++|++.
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~-~kL~lv~~~~v~g~v~al~~~~g~Lla~i-g~~l~vy~l~ 912 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSD-GKLQTVAEKEVKGAVYSMVEFNGKLLASI-NSTVRLYEWT 912 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEET-TEEEEEEEEEESSCEEEEEEETTEEEEEE-TTEEEEEEEC
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEEC-CEEEEEEEEEcCCcCEEEeeeCCEEEEEc-CCEEEEEECC
Confidence 3688888764221 334577887641 12246788889999999999999888855 5789999985
No 272
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=93.79 E-value=9.8 Score=41.90 Aligned_cols=137 Identities=9% Similarity=0.076 Sum_probs=69.9
Q ss_pred CceEEEEEecCCcceEEEEecCCcEEEEEecCCceEeeeccccceecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcC
Q 001202 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLA 286 (1124)
Q Consensus 208 ~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~ 286 (1124)
...+..+.+++ . ...++..+|.++. +.|+. +-|...... ..+...+ .+++.++++.+|++. +|. ||...
T Consensus 79 ~~~~~~i~~~~-~-~~~~~g~~g~i~~--S~DgG-~tW~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~-~g~--v~~S~ 148 (327)
T 2xbg_A 79 DYRFNSVSFQG-N-EGWIVGEPPIMLH--TTDGG-QSWSQIPLD--PKLPGSPRLIKALGNGSAEMITN-VGA--IYRTK 148 (327)
T ss_dssp CCEEEEEEEET-T-EEEEEEETTEEEE--ESSTT-SSCEECCCC--TTCSSCEEEEEEEETTEEEEEET-TCC--EEEES
T ss_pred CccEEEEEecC-C-eEEEEECCCeEEE--ECCCC-CCceECccc--cCCCCCeEEEEEECCCCEEEEeC-Ccc--EEEEc
Confidence 34566777765 2 2233345554433 33322 124322210 1122334 777777888887764 554 34433
Q ss_pred CCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
+.+........ + +.+.+..+++.|+|..++++...+.++-+|- ++.....+.......+..+++.+++
T Consensus 149 DgG~tW~~~~~---~----~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g 216 (327)
T 2xbg_A 149 DSGKNWQALVQ---E----AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDG 216 (327)
T ss_dssp STTSSEEEEEC---S----CCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTS
T ss_pred CCCCCCEEeec---C----CCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCCCCCCccceeEECCCC
Confidence 33544444331 2 4567899999999998877754333333332 1222222211113457777777765
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=93.70 E-value=11 Score=42.08 Aligned_cols=95 Identities=11% Similarity=0.088 Sum_probs=55.9
Q ss_pred CeEEEEEccCC-CEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCC-EEEEEECC-CcEEEE
Q 001202 258 DAVCASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKS-RGLTVW 334 (1124)
Q Consensus 258 ~~v~va~spdg-~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~-~Lasgs~D-g~I~vW 334 (1124)
.+..+++.+.+ .+..+-...+.|.+.+.+. .....+.. + .......+++.|++. ...+-+.+ +.|...
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~---~----~l~~P~~iavdp~~g~ly~td~~~~~~I~r~ 187 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLW---Q----SLEKPRAIALHPMEGTIYWTDWGNTPRIEAS 187 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEC---T----TCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCCC--CceEEEEe---C----CCCCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence 34478898854 4555556678899998864 22232221 1 233468899999655 44555555 778888
Q ss_pred EcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 335 SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 335 dv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
+..+... ..+...+...-+.++++|++
T Consensus 188 ~~dG~~~-~~~~~~~~~~PnGla~d~~~ 214 (349)
T 3v64_C 188 SMDGSGR-RIIADTHLFWPNGLTIDYAG 214 (349)
T ss_dssp ETTSCSC-EESCCSSCSCEEEEEEETTT
T ss_pred eCCCCCc-EEEEECCCCCcceEEEeCCC
Confidence 8876532 22222113345667777654
No 274
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=93.70 E-value=15 Score=44.32 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=23.6
Q ss_pred cCC---CEEEEEecCCeEEEEEcCCCCceeEEEe
Q 001202 266 PEQ---QILAVGTRRGVVELYDLAESASLIRTVS 296 (1124)
Q Consensus 266 pdg---~lLAsGs~DgtV~vwd~~~~~~~~~~l~ 296 (1124)
.+| ..++.++.+|.+.+.|..+ ++.+....
T Consensus 318 ~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~~ 350 (599)
T 1w6s_A 318 KDGKARKLLTHPDRNGIVYTLDRTD-GALVSANK 350 (599)
T ss_dssp TTSCEEEEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred cCCcEEEEEEEECCCcEEEEEECCC-CCEeeccc
Confidence 567 5788899999999999988 77665444
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=93.53 E-value=12 Score=42.23 Aligned_cols=94 Identities=10% Similarity=0.040 Sum_probs=54.3
Q ss_pred eEEEEEccCC-CEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEE-ECC-CcEEEEE
Q 001202 259 AVCASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKS-RGLTVWS 335 (1124)
Q Consensus 259 ~v~va~spdg-~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasg-s~D-g~I~vWd 335 (1124)
+..+++.+.+ .+..+-...+.|.+.+++. .....+.. + ....-..+++.|++..|..+ +.+ +.|...+
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg--~~~~~l~~---~----~l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLW---Q----SLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTTS--CSCEEEEC---S----SCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCCC--CceEEeec---C----CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 3468888754 4455555677888887764 32333221 1 23446889999976655444 444 6788888
Q ss_pred cCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 336 v~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
..+......... +...-+.++++|++
T Consensus 232 ~dG~~~~~~~~~-~~~~PnGlavd~~~ 257 (386)
T 3v65_B 232 MDGSGRRIIADT-HLFWPNGLTIDYAG 257 (386)
T ss_dssp TTSCSCEEEECS-SCSCEEEEEEEGGG
T ss_pred CCCCCcEEEEEC-CCCCeeeEEEeCCC
Confidence 876543222222 13345667777654
No 276
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=93.37 E-value=12 Score=41.75 Aligned_cols=66 Identities=9% Similarity=0.106 Sum_probs=42.1
Q ss_pred CCCeEEEEEc-------cCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE
Q 001202 256 SGDAVCASIA-------PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (1124)
Q Consensus 256 h~~~v~va~s-------pdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs 326 (1124)
|..+..++|. .+|.++++....+.|...+++..++....-.+.. + ..+.+..+++.|||...++.+
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~-~----~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK-N----VFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT-T----TSCCEEEEEECTTSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc-C----CCCCeeEEEECCCCcEEEEEe
Confidence 3444578883 5788887777778888888875233221111110 1 245689999999998777665
No 277
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.17 E-value=0.67 Score=52.99 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=52.0
Q ss_pred EEEeeCCeEEEEEcCCcEEEEecCCCc-----------eeEEEEeeChHHHhhhcceeEEEEecCC---cEEEEEeCCCe
Q 001202 25 IYFKVNNGLLLIASPCHIELWSSSQHK-----------VRLGKYKRDSESVQREGENLQAVWSPDT---KLIAVVTSSLY 90 (1124)
Q Consensus 25 v~fS~dg~llA~~~~~~l~IW~~~~~~-----------~~l~~~~r~~~sl~~~G~~~~v~wSPDg---~~Lav~t~dg~ 90 (1124)
+..||+|+++|..++.+|.|-....+. .+...+.-.+.......++..+.|-|-| ..|+|-|+|+.
T Consensus 71 lvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~ 150 (452)
T 3pbp_A 71 VISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT 150 (452)
T ss_dssp EEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC
T ss_pred EEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE
Confidence 557999999999999999998773111 1111222211111124668999998865 68999999999
Q ss_pred EEEEEeee
Q 001202 91 LHIFKVQI 98 (1124)
Q Consensus 91 l~i~~v~~ 98 (1124)
|++||+..
T Consensus 151 Ir~yDl~~ 158 (452)
T 3pbp_A 151 ITMFDILN 158 (452)
T ss_dssp EEEEETTC
T ss_pred EEEEEccc
Confidence 99999975
No 278
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=92.59 E-value=22 Score=42.64 Aligned_cols=67 Identities=15% Similarity=0.068 Sum_probs=41.6
Q ss_pred CeEEEEEcCCCCceeEEEeecc---CCCCCCCCCCeEEEEEC-CCCC---EEEEEECCCcEEEEEcCCCeeeEEecc
Q 001202 278 GVVELYDLAESASLIRTVSLYD---WGYSMDDTGPVSCIAWT-PDNS---AFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 278 gtV~vwd~~~~~~~~~~l~~~~---~g~~~~h~g~V~~lawS-PDG~---~Lasgs~Dg~I~vWdv~~~~l~~tl~~ 347 (1124)
+.|..+|.++ ++.+-...... |.+. ....++. +... .||+ .++.++.+|.+.++|..+++++.....
T Consensus 291 ~~v~AlD~~T-G~~~W~~q~~~~d~wd~~-~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 291 SGQVGVDPSS-GEVKWFYQHTPNDAWDFS-GNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp SEEEEECTTT-CCEEEEEESSTTCCSCCC-CCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred ceEEEEeCCC-CCEEEEEeCCCCCccccc-CCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 5788888877 66555444211 0000 0112332 2222 5785 788899999999999999988776644
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=91.10 E-value=24 Score=39.85 Aligned_cols=98 Identities=11% Similarity=0.070 Sum_probs=56.8
Q ss_pred CCCCeEEEEEccC-CCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEE-EEEECCCcEE
Q 001202 255 GSGDAVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKSRGLT 332 (1124)
Q Consensus 255 gh~~~v~va~spd-g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~L-asgs~Dg~I~ 332 (1124)
+...+..++|++. +.+..+-..++.|..++.+. +. ..++... + ......+++.+.+..| ++-+..+.|.
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g-~~-~~~~~~~--~-----~~~p~glavd~~~g~lY~~d~~~~~I~ 184 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNG-SN-VEEVVST--G-----LESPGGLAVDWVHDKLYWTDSGTSRIE 184 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CC-EEEEECS--S-----CSCCCCEEEETTTTEEEEEETTTTEEE
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCC-CC-cEEEEeC--C-----CCCccEEEEEeCCCeEEEEcCCCCeEE
Confidence 3445668999975 45555656778898888875 33 2222210 1 2234668888865544 4545567888
Q ss_pred EEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 333 vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
+.+..+......+.. +......+++.|.+
T Consensus 185 ~~~~dg~~~~~l~~~-~l~~P~giavdp~~ 213 (386)
T 3v65_B 185 VANLDGAHRKVLLWQ-SLEKPRAIALHPME 213 (386)
T ss_dssp ECBTTSCSCEEEECS-SCSCEEEEEEETTT
T ss_pred EEeCCCCceEEeecC-CCCCCcEEEEEcCC
Confidence 888876543322222 13345566666543
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=89.62 E-value=34 Score=39.31 Aligned_cols=128 Identities=9% Similarity=0.141 Sum_probs=68.7
Q ss_pred EEEEecC---CcEEEEEecCCceEeeecccccee--cC-CCCeEEEEEccCCCEEEEEecC---Ce-EEEEEcCCCCcee
Q 001202 223 LFVLYSN---GQLMSCSVSKKGLKLAEFIKIDKE--LG-SGDAVCASIAPEQQILAVGTRR---GV-VELYDLAESASLI 292 (1124)
Q Consensus 223 ~~~~s~d---G~~~~~~~~d~~i~~wd~~~~~~~--~g-h~~~v~va~spdg~lLAsGs~D---gt-V~vwd~~~~~~~~ 292 (1124)
.+++.++ |+++++... ..++.++..++... .+ ...+..++++++|+++++...+ .. +...+.. +...
T Consensus 143 gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~--~~~~ 219 (433)
T 4hw6_A 143 RMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA--SGFT 219 (433)
T ss_dssp EEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG--GTTC
T ss_pred eEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC--CCee
Confidence 3455553 666665444 56666665443221 22 2334599999999955554321 12 2222221 2111
Q ss_pred --EEEeeccCCCCCCCCCCeEEEEECC-CCCEEEEEECCCcEEEEEcCCCeeeEEecc-CCcCceeeeEEcCCC
Q 001202 293 --RTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-ISLSSISSPIVKPNQ 362 (1124)
Q Consensus 293 --~~l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~-h~~~~V~s~~~sp~~ 362 (1124)
..+. .-..-..+++.| +|...++-..++.|..++..++.....+.. .....-..++++|++
T Consensus 220 ~~~~~~---------~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG 284 (433)
T 4hw6_A 220 ERLSLC---------NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTG 284 (433)
T ss_dssp CEEEEE---------ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTS
T ss_pred cccccc---------ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCC
Confidence 1121 112235688999 777776766778899999986654233222 111223468888887
No 281
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=88.53 E-value=34 Score=37.94 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=50.6
Q ss_pred eEEEEecCCcEEEEEecCCceEeeecccccee-------cCCCCeEEEEEccC----CCEEEEEecC-----CeEEEEEc
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAVCASIAPE----QQILAVGTRR-----GVVELYDL 285 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~-------~gh~~~v~va~spd----g~lLAsGs~D-----gtV~vwd~ 285 (1124)
..+++.+||+++++.. .+.+..++.-+.+.. .+......++++|+ +.+.++-..+ +.|..|+.
T Consensus 34 ~~ia~~pdG~l~V~e~-~g~I~~i~~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~ 112 (352)
T 2ism_A 34 WALAFLPDGGMLIAER-PGRIRLFREGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRH 112 (352)
T ss_dssp EEEEECTTSCEEEEET-TTEEEEEETTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEE
T ss_pred eEEEEcCCCeEEEEeC-CCeEEEEECCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEe
Confidence 4556667777655543 355555541111100 12234559999998 4444444332 56777777
Q ss_pred CCCCce--eEEEeeccCCC--CCCCCCCeEEEEECCCCCEEEEEE
Q 001202 286 AESASL--IRTVSLYDWGY--SMDDTGPVSCIAWTPDNSAFAVGW 326 (1124)
Q Consensus 286 ~~~~~~--~~~l~~~~~g~--~~~h~g~V~~lawSPDG~~Lasgs 326 (1124)
+. +.. ...+- ...+. ...|.+ ..++|.|||...++-+
T Consensus 113 ~~-~~~~~~~~l~-~~~p~~~~~~h~~--~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 113 LG-ERGVLDRVVL-DGIPARPHGLHSG--GRIAFGPDGMLYVTTG 153 (352)
T ss_dssp CS-SCEEEEEEEE-EEECCCTTCCCCC--CCEEECTTSCEEEECC
T ss_pred CC-CCcCceEEEE-EeCCCCCCCCcCC--ceEEECCCCCEEEEEC
Confidence 64 321 11111 00110 112443 5899999998666644
No 282
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=87.70 E-value=26 Score=38.67 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=49.2
Q ss_pred EEEEccC-CCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCC--CCCCCCeEEEEE---CCCCCEEEEEEC-------
Q 001202 261 CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS--MDDTGPVSCIAW---TPDNSAFAVGWK------- 327 (1124)
Q Consensus 261 ~va~spd-g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~--~~h~g~V~~law---SPDG~~Lasgs~------- 327 (1124)
|++|.++ +++.++....|+|..|+.+. +..... ... +.+ .+....+..|.| .|+|+.+++...
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~-~~~~~~-~~~--~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKT-QSHFNV-VID--GASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTT-CCEEEE-CCT--TTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCC-CeEEEE-ecC--CccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 6889875 55555555899999999875 433322 211 111 011223689999 689888876442
Q ss_pred ------CCcEEEEEcC---CCeeeE
Q 001202 328 ------SRGLTVWSVS---GCRLMS 343 (1124)
Q Consensus 328 ------Dg~I~vWdv~---~~~l~~ 343 (1124)
++.+..+|+. +++...
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~ 117 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVW 117 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEE
Confidence 5778889988 555443
No 283
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=86.89 E-value=43 Score=37.27 Aligned_cols=197 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred cCCcEEEEEecCCceEeeeccccceecCCC-CeE-EEEEccCCC-------EEEEEecC---CeEEEEEcCCCCceeEEE
Q 001202 228 SNGQLMSCSVSKKGLKLAEFIKIDKELGSG-DAV-CASIAPEQQ-------ILAVGTRR---GVVELYDLAESASLIRTV 295 (1124)
Q Consensus 228 ~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~-~~v-~va~spdg~-------lLAsGs~D---gtV~vwd~~~~~~~~~~l 295 (1124)
|....++.+..++.+.++|. .++.+.... +.+ .|.+-|+.. ++++...+ ++|++|+++.....+..+
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Q ss_pred eeccCCC--CCCCC-CCeEEEEE--CCCCC--EEEEEECCCcEEEEEc-------CCCeeeEEeccCCcCceeeeEEcCC
Q 001202 296 SLYDWGY--SMDDT-GPVSCIAW--TPDNS--AFAVGWKSRGLTVWSV-------SGCRLMSTIRQISLSSISSPIVKPN 361 (1124)
Q Consensus 296 ~~~~~g~--~~~h~-g~V~~law--SPDG~--~Lasgs~Dg~I~vWdv-------~~~~l~~tl~~h~~~~V~s~~~sp~ 361 (1124)
. .. +.... ..+..++. +|++. ++++...+|.+..|.+ .+.+++.++...
T Consensus 117 ~----~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg------------- 179 (355)
T 3amr_A 117 T----DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN------------- 179 (355)
T ss_dssp S----CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-------------
T ss_pred c----ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-------------
Q ss_pred CCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeee
Q 001202 362 QDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (1124)
Q Consensus 362 ~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~ 441 (1124)
+...-++-|.++++++....+ ..||.+. +....+.+-.+-+...+..
T Consensus 180 ---------sq~EgcvvDd~~g~Lyv~eEd--~GIw~~d-----a~p~~~~~~~~v~~~~~g~----------------- 226 (355)
T 3amr_A 180 ---------SQTEGMAADDEYGRLYIAEED--EAIWKFS-----AEPDGGSNGTVIDRADGRH----------------- 226 (355)
T ss_dssp ---------SCEEEEEEETTTTEEEEEETT--TEEEEEE-----CSTTSCSCCEEEEEBSSSS-----------------
T ss_pred ---------CCcceEEEcCCCCeEEEeccc--ceEEEEe-----CCcCCCCCceEEEEecCCc-----------------
Q ss_pred cccceeeccCCCceEEEEE--ccCCC-EEEEEc-CCCeE-EEEcC-CCc
Q 001202 442 LNLPVSYISQNWPVQHVAA--SKDGM-FLAVAG-LHGLI-LYDIR-QKK 484 (1124)
Q Consensus 442 ~~~p~~~~~~~~~I~~va~--SpdG~-~lAvag-~dG~v-lwd~~-sg~ 484 (1124)
-...+..+++ .++|+ ||++++ .+... +||.. +.+
T Consensus 227 ---------l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~ 266 (355)
T 3amr_A 227 ---------LTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNK 266 (355)
T ss_dssp ---------BCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred ---------cccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCc
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=86.40 E-value=51 Score=37.68 Aligned_cols=146 Identities=15% Similarity=0.166 Sum_probs=76.5
Q ss_pred CCeEEEEEcc-CCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECC-C----c
Q 001202 257 GDAVCASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-R----G 330 (1124)
Q Consensus 257 ~~~v~va~sp-dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~D-g----~ 330 (1124)
..+..++++| ++..|.+....+.|+.+|.+. +. +.++. . .......|+|+|+|+.|.++... + .
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~-~~-v~~~~----~----~~~~P~~ia~d~~G~~lyvad~~~~~~~~~ 206 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEK-EY-VSTVY----S----GLSKVRTICWTHEADSMIITNDQNNNDRPN 206 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTT-TE-EEEEE----C----CCSCEEEEEECTTSSEEEEEECCSCTTSEE
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCC-CE-EEEEe----c----CCCCcceEEEeCCCCEEEEEeCCCCcccce
Confidence 3455889998 344455554557888888865 33 33332 1 23447899999999966665542 2 2
Q ss_pred EEEEEcCCCee-eEEeccCCcCceeeeEEcC-CCCCCcceEEEe---eeEEEEeCCCCeEEEE-ec-CC-cceEEEEec-
Q 001202 331 LTVWSVSGCRL-MSTIRQISLSSISSPIVKP-NQDCKYEPLMSG---TSMMQWDEYGYRLYAI-EE-GS-SERVLIFSF- 401 (1124)
Q Consensus 331 I~vWdv~~~~l-~~tl~~h~~~~V~s~~~sp-~~~~~~~~l~sg---~~i~~W~~~~~~l~~~-~~-~~-~~~v~~~s~- 401 (1124)
+.+.+..+... ...+.. ......++++| ++ ..+++- ..+..+++.+...... .. +. ...=+++++
T Consensus 207 v~~~~~~g~~~~~~~l~~--~~~p~giavdp~~g----~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pd 280 (430)
T 3tc9_A 207 NYILTRESGFKVITELTK--GQNCNGAETHPING----ELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPS 280 (430)
T ss_dssp EEEEEGGGTSCSEEEEEE--CSSCCCEEECTTTC----CEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTT
T ss_pred EEEEeCCCceeeeeeecc--CCCceEEEEeCCCC----EEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCC
Confidence 33344433211 122222 22356677888 44 444432 2677778777654221 11 11 112255555
Q ss_pred cc-eEEeeccCCceeeeE
Q 001202 402 GK-CCLNRGVSGMTYARQ 418 (1124)
Q Consensus 402 ~k-~~~s~s~d~~v~~w~ 418 (1124)
++ ..++-...+.+..++
T Consensus 281 G~~lyv~d~~~~~I~~~~ 298 (430)
T 3tc9_A 281 GNYAYIVVVNQHYILRSD 298 (430)
T ss_dssp SSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCEEEEEe
Confidence 55 334444444555444
No 285
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=86.37 E-value=13 Score=42.41 Aligned_cols=176 Identities=11% Similarity=0.112 Sum_probs=91.0
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCceeEEEeecc-CCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCe-eeEE
Q 001202 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYD-WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-LMST 344 (1124)
Q Consensus 267 dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~-~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~-l~~t 344 (1124)
+|.-+.++ .++.||.-++.+ ...-+.++... . .-+.|..+..||+|++||..+. .+|.|-.+..+. ....
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~-~~~Yk~L~~~~~i-----~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLT-DSLYHSLNFSRHL-----VLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVED 102 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTT-CSSCEEEECTTTC-----CCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCC
T ss_pred CCCEEEEE-ECCEEEEEECCC-CCcceEEecCccc-----ccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcc
Confidence 34444444 457788878775 33445555321 0 0124778999999999999876 588888886321 0000
Q ss_pred eccCCcCcee--eeEEcCCCCCCcceEEEeeeEEEEeCCCCeEEEEecCCcceEEEEeccceEEeeccCCceeeeEeeec
Q 001202 345 IRQISLSSIS--SPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYG 422 (1124)
Q Consensus 345 l~~h~~~~V~--s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~l~~~ 422 (1124)
... ...+. +....+.. ..--+.+....|++-+.. +..++.-..|+++++|++..+
T Consensus 103 ~~~--~~~~q~~ty~l~~~~----~~~~s~I~qVlWHPl~~~-----------------ds~LVVLtsD~~Ir~yDl~~s 159 (452)
T 3pbp_A 103 VSI--QDAFQIFHYSIDEEE----VGPKSSIKKVLFHPKSYR-----------------DSCIVVLKEDDTITMFDILNS 159 (452)
T ss_dssp HHH--HHTTEEEEEEGGGCC------CCCCEEEEEECTTBGG-----------------GCEEEEEETTSCEEEEETTCT
T ss_pred ccc--ccccceeEEEcCCcc----cCCCCceeEEEeccccCC-----------------CCeEEEEecCCEEEEEEcccC
Confidence 000 00011 11111100 000011244556654432 223444455677888886653
Q ss_pred CCeEEEeecCCCccceeeecccc---eeeccCCCceEEEEEccCCCEEEEEc--CCCeE--EEEcCCCcEE
Q 001202 423 EDRLLVVQSEDTDELKILHLNLP---VSYISQNWPVQHVAASKDGMFLAVAG--LHGLI--LYDIRQKKWR 486 (1124)
Q Consensus 423 ~~~l~l~~~~~~~~~~w~~~~~p---~~~~~~~~~I~~va~SpdG~~lAvag--~dG~v--lwd~~sg~wk 486 (1124)
.++ |. .++.. ...-.....|.+++|+++|-.|.+.. +.|-| +|-+...+|.
T Consensus 160 ~~~---------P~----~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlcP~LP~~~~ 217 (452)
T 3pbp_A 160 QEK---------PI----VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFYPFLPSVLL 217 (452)
T ss_dssp TSC---------CE----EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEESSCCCSEEE
T ss_pred CCC---------Cc----chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEECCCCccccc
Confidence 331 00 00000 01112235688999999998777754 88887 7777677775
No 286
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=86.04 E-value=46 Score=36.79 Aligned_cols=98 Identities=9% Similarity=0.037 Sum_probs=57.6
Q ss_pred CCCCeEEEEEccCC-CEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEE-EEEECCCcEE
Q 001202 255 GSGDAVCASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKSRGLT 332 (1124)
Q Consensus 255 gh~~~v~va~spdg-~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~L-asgs~Dg~I~ 332 (1124)
+...++.++|++.. .+..+-..++.|..++.+. +. ...+.. . .......+++.+.+..| ++-...+.|.
T Consensus 71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g-~~-~~~~~~---~----~~~~p~glavd~~~g~ly~~d~~~~~I~ 141 (349)
T 3v64_C 71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNG-SN-VEEVVS---T----GLESPGGLAVDWVHDKLYWTDSGTSRIE 141 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CS-CEEEEC---S----SCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCceEEEEEeccccEEEEEeccCCceEEEecCC-CC-ceEEEe---C----CCCCccEEEEecCCCeEEEEcCCCCeEE
Confidence 34456699999764 4555555678898888875 33 222220 0 12335678998865544 5555567899
Q ss_pred EEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 333 vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
+.+..+......+... ......+++.|.+
T Consensus 142 ~~~~dG~~~~~l~~~~-l~~P~~iavdp~~ 170 (349)
T 3v64_C 142 VANLDGAHRKVLLWQS-LEKPRAIALHPME 170 (349)
T ss_dssp EEETTSCSCEEEECTT-CSCEEEEEEETTT
T ss_pred EEcCCCCceEEEEeCC-CCCcceEEEecCc
Confidence 9998876433222221 2344566666643
No 287
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=84.83 E-value=31 Score=39.92 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=14.6
Q ss_pred eEEEEECCCCCEEEEEEC
Q 001202 310 VSCIAWTPDNSAFAVGWK 327 (1124)
Q Consensus 310 V~~lawSPDG~~Lasgs~ 327 (1124)
...|+|.|||...++.+.
T Consensus 146 ~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 146 SGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp EEEEEECTTSCEEEEECC
T ss_pred CCeEeECCCCeEEEEECC
Confidence 689999999997776554
No 288
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=84.23 E-value=56 Score=36.27 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=34.9
Q ss_pred EEEeeCCeEEEEEc-CCcEEEEecCCCceeEEEEeeChH-HHhhhcceeEEEEecC---CcEEEE
Q 001202 25 IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSE-SVQREGENLQAVWSPD---TKLIAV 84 (1124)
Q Consensus 25 v~fS~dg~llA~~~-~~~l~IW~~~~~~~~l~~~~r~~~-sl~~~G~~~~v~wSPD---g~~Lav 84 (1124)
++|.|||++|++-. .+.|.+++.. .+.. .......+ .....+....++++|| +..|.+
T Consensus 37 ia~~pdG~llVter~~G~I~~v~~~-~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv 99 (347)
T 3das_A 37 LAPLPGGDLLVSSRDEATITRVDAK-TGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA 99 (347)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTT-TCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE
T ss_pred EEEcCCCcEEEEEecCCEEEEEECC-CCcE-eeecccCceeecCCCCceeeEeccccccCCEEEE
Confidence 77899999998876 6778888753 2221 11111111 1123455679999996 445554
No 289
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=83.89 E-value=59 Score=36.23 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=45.1
Q ss_pred eEEEEEccCCCEEEEE-ecCCeEEEEEcCCCCcee--EEEeeccCCCCCCCCCCeEEEEECC-CCCEEEEEECC-CcEEE
Q 001202 259 AVCASIAPEQQILAVG-TRRGVVELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS-RGLTV 333 (1124)
Q Consensus 259 ~v~va~spdg~lLAsG-s~DgtV~vwd~~~~~~~~--~~l~~~~~g~~~~h~g~V~~lawSP-DG~~Lasgs~D-g~I~v 333 (1124)
+-.++||||++.+.++ +..+.|..|+++..+... +.+. -.+..-.++..+ +|+..+++..+ +.|..
T Consensus 223 pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---------~~g~PDGi~vD~e~G~lwva~~~~g~~v~~ 293 (355)
T 3sre_A 223 ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---------FDTLVDNISVDPVTGDLWVGCHPNGMRIFF 293 (355)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---------CSSEEEEEEECTTTCCEEEEEESCHHHHHS
T ss_pred cCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---------CCCCCceEEEeCCCCcEEEEecCCceEEEE
Confidence 3378999999876665 457899999997534322 2222 134467789999 59988776544 23444
Q ss_pred EEcC
Q 001202 334 WSVS 337 (1124)
Q Consensus 334 Wdv~ 337 (1124)
|+..
T Consensus 294 ~~P~ 297 (355)
T 3sre_A 294 YDAE 297 (355)
T ss_dssp CCTT
T ss_pred ECCC
Confidence 4544
No 290
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=83.80 E-value=49 Score=35.20 Aligned_cols=66 Identities=18% Similarity=0.375 Sum_probs=39.9
Q ss_pred CCCEEEEEcCCC-----eE-EEEcCCCcEEEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeCC
Q 001202 463 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (1124)
Q Consensus 463 dG~~lAvag~dG-----~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~~ 529 (1124)
+++.++.||.++ .+ .||+.+++|............ .......+..+++++.........+.+|+.+
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY-VGATVLRGRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCBCSSSBEEEEEEEETT
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc-eeEEEECCEEEEEcCcCCCcccccEEEEcCC
Confidence 778888888753 46 999999999987654333211 1222334555566655433333566777663
No 291
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=82.33 E-value=54 Score=34.67 Aligned_cols=215 Identities=8% Similarity=0.035 Sum_probs=109.2
Q ss_pred eEEEEeeCC-eEEEEEcC-CcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEEEEeeecC
Q 001202 23 QIIYFKVNN-GLLLIASP-CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (1124)
Q Consensus 23 ~iv~fS~dg-~llA~~~~-~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~v~~~~ 100 (1124)
.-++++|++ +++|+... +.|..-|.. +..+.... +...+..-.+++.+|+.+.++.-.++.+.+|++....
T Consensus 30 SGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~-----l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 30 SSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIP-----LDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp EEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEE-----CSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred ceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEe-----cCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 448889985 46655443 356666663 32233221 1223455679999999866665567788888886533
Q ss_pred ceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCCCCccccc
Q 001202 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1124)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~~~~~~i~ 180 (1124)
.. . .+....+.+. . ........-.++.+.++.++++...+...++.|++-.... . ..+.
T Consensus 103 ~i-~---------~~~~~~~~~~-~-~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~-~--------l~i~ 161 (255)
T 3qqz_A 103 EV-K---------ILKKIKIPLQ-E-SPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN-E--------LHIS 161 (255)
T ss_dssp CE-E---------EEEEEECCCS-S-CCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS-C--------CEEE
T ss_pred ee-e---------eeeeeccccc-c-ccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC-c--------eeee
Confidence 10 0 0000000000 0 0001111223444456688888876666677777421110 0 0000
Q ss_pred cccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCce-Eeeeccccce--ecCCC
Q 001202 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL-KLAEFIKIDK--ELGSG 257 (1124)
Q Consensus 181 ~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i-~~wd~~~~~~--~~gh~ 257 (1124)
..+- + . -......+..++|+|..+.+.+++..++.++.-..++.+ ..+....+.. ...+.
T Consensus 162 ~~~~-----~--~----------~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~ 224 (255)
T 3qqz_A 162 KDKA-----L--Q----------RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIK 224 (255)
T ss_dssp ECHH-----H--H----------HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCC
T ss_pred cchh-----h--c----------cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccC
Confidence 0000 0 0 000112345678888888888888888877765555443 3333332210 01223
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEE
Q 001202 258 DAVCASIAPEQQILAVGTRRGVVELY 283 (1124)
Q Consensus 258 ~~v~va~spdg~lLAsGs~DgtV~vw 283 (1124)
.+-.++|.++|++.++ ++-.-+.+|
T Consensus 225 qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 225 QAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp SEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred CCCeeEECCCCCEEEE-cCCceEEEE
Confidence 4458999999997766 454444444
No 292
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=80.46 E-value=6.6 Score=47.35 Aligned_cols=61 Identities=7% Similarity=-0.007 Sum_probs=41.4
Q ss_pred CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEecc
Q 001202 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 277 DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~ 347 (1124)
+|.|..||+.+ ++.+-+..... ....+++ ...|..++.|+.||.++.||..+++.+.+++.
T Consensus 465 ~G~l~A~D~~t-G~~~W~~~~~~----~~~~g~~-----~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 465 VGSLRAMDPVS-GKVVWEHKEHL----PLWAGVL-----ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp SEEEEEECTTT-CCEEEEEEESS----CCCSCCE-----EETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEEECCC-CCEEEEecCCC----CCcccce-----EeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 57888899887 66554444211 0112221 12466788899999999999999998888765
No 293
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=80.40 E-value=64 Score=34.28 Aligned_cols=65 Identities=23% Similarity=0.350 Sum_probs=39.0
Q ss_pred CCCEEEEEcCCC-----eE-EEEcCCCcEEEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeC
Q 001202 463 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 463 dG~~lAvag~dG-----~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~ 528 (1124)
+++.++.||.++ .+ .||+.+++|............ .......+.++++++.........+.+|+.
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGVCAVNGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeEEEECCEEEEECCcCCCcccccEEEEcC
Confidence 788888888753 46 999999999987654433211 112233444556665543323345667766
No 294
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=80.26 E-value=65 Score=34.29 Aligned_cols=65 Identities=18% Similarity=0.321 Sum_probs=39.6
Q ss_pred CCCEEEEEcCCC-----eE-EEEcCCCcEEEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeC
Q 001202 463 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 463 dG~~lAvag~dG-----~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~ 528 (1124)
+++.++.||.++ .+ .||+.+++|............ .......+.+++++++........+.+|+.
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~ 270 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT-VKCAAVGSIVYVLAGFQGVGRLGHILEYNT 270 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC-CEEEEETTEEEEEECBCSSSBCCEEEEEET
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc-eeEEEECCEEEEEeCcCCCeeeeeEEEEcC
Confidence 778888887643 45 999999999988654433211 122233455566666543333446667766
No 295
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=80.13 E-value=2.8 Score=41.97 Aligned_cols=57 Identities=14% Similarity=0.001 Sum_probs=47.4
Q ss_pred cCChHHHHHHHHhcCcHHHHhhHHhhhhhccCchhhHHHHHHHHHHHHhcccHhHHHHHHHhhh
Q 001202 864 AGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLL 927 (1124)
Q Consensus 864 ~g~P~~Lf~~cl~~~~l~taa~yLivl~n~e~~~~~~~~a~~Ll~~al~~~~w~l~~eL~RFl~ 927 (1124)
+-+|..=|+.+|+.|+++.|..++.-+ .+..+|.+|.+.||.+++.++|.+-.+=++
T Consensus 5 ~~D~~~rF~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 5 VQDPHIRFDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred cCChHHHHHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 446777799999999999999997654 347899999999999999999987654433
No 296
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=79.21 E-value=82 Score=34.79 Aligned_cols=63 Identities=6% Similarity=0.046 Sum_probs=40.0
Q ss_pred CeEEEEEcc-------CCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE
Q 001202 258 DAVCASIAP-------EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (1124)
Q Consensus 258 ~~v~va~sp-------dg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs 326 (1124)
.+..++|.. +|++++.....+.|...+++. ++......+.. + ..+.+..+++.|||...++..
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~-~~~~~~~~~~~-~----~~~rp~~v~~~pdG~lyv~td 341 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNG-DKVTEDGRILT-D----RGQRIRDVRTGPDGYLYVLTD 341 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEET-TEEEEEEEESG-G----GCCCEEEEEECTTSCEEEEEC
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCC-CeEeeeEEccc-C----CCCceeEEEECCCCcEEEEEe
Confidence 344777763 577887777788888888775 43332222111 1 235689999999999666543
No 297
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=77.46 E-value=1e+02 Score=35.07 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=37.1
Q ss_pred CeEEEEEccC---CCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE
Q 001202 258 DAVCASIAPE---QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (1124)
Q Consensus 258 ~~v~va~spd---g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs 326 (1124)
.+..++++|+ +.+.+ +...+.|+.++..+ +... ++. + .......++|+|+|..+++..
T Consensus 140 ~P~gvavd~~s~~g~Lyv-~D~~~~I~~id~~~-g~v~-~~~----~----~~~~P~giavd~dG~lyVad~ 200 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYW-VGQRDAFRHVDFVN-QYVD-IKT----T----NIGQCADVNFTLNGDMVVVDD 200 (433)
T ss_dssp CCCEEEECTTTTTCEEEE-ECBTSCEEEEETTT-TEEE-EEC----C----CCSCEEEEEECTTCCEEEEEC
T ss_pred CCceEEEccccCCCEEEE-EeCCCCEEEEECCC-CEEE-Eee----c----CCCCccEEEECCCCCEEEEcC
Confidence 4458999985 55444 43338899998865 4433 332 1 234578999999999444443
No 298
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=77.34 E-value=31 Score=37.47 Aligned_cols=89 Identities=3% Similarity=-0.109 Sum_probs=45.2
Q ss_pred EecCCcEEEEEec-CCceEeeeccccceecCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCC
Q 001202 226 LYSNGQLMSCSVS-KKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (1124)
Q Consensus 226 ~s~dG~~~~~~~~-d~~i~~wd~~~~~~~~gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~ 304 (1124)
++++|+.+..... ...|..-+........-..+.....++|++++|+-...++.-+|+.++..+.....+.
T Consensus 152 ~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt-------- 223 (302)
T 3s25_A 152 CNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLT-------- 223 (302)
T ss_dssp SEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECS--------
T ss_pred eeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEe--------
Confidence 4567776665544 3334333322221110011233334669999988766543345555554444444443
Q ss_pred CCCCCeEEEEECCCCCEEEEEE
Q 001202 305 DDTGPVSCIAWTPDNSAFAVGW 326 (1124)
Q Consensus 305 ~h~g~V~~lawSPDG~~Lasgs 326 (1124)
...+ ..|+|+|..|.-+.
T Consensus 224 --~~~~--~~~~~~g~~Iy~~~ 241 (302)
T 3s25_A 224 --EANI--EHYNVYGSLIFYQR 241 (302)
T ss_dssp --CSCE--EEEEEETTEEEEEE
T ss_pred --CCCc--ceEEECCCEEEEEE
Confidence 1223 34788888876553
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=76.65 E-value=1.6e+02 Score=36.66 Aligned_cols=95 Identities=9% Similarity=-0.001 Sum_probs=58.3
Q ss_pred CeEEEEEccCCC-EEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE-CC-CcEEEE
Q 001202 258 DAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KS-RGLTVW 334 (1124)
Q Consensus 258 ~~v~va~spdg~-lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs-~D-g~I~vW 334 (1124)
.+..+|+.+.++ +..+-...+.|.+.+++. ....++.. . .......|++.|.+..|..+. .+ +.|.+.
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG--~~~~~l~~---~----~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~ 542 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFR---E----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 542 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEEEEEE---C----TTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCC--CeEEEEEe---C----CCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence 344789998764 555556678999999874 33333321 1 233468999999755554443 33 678888
Q ss_pred EcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 335 SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 335 dv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
++.|......+.. .....+.+++.+..
T Consensus 543 ~~dG~~~~~lv~~-~l~~P~GLavD~~~ 569 (791)
T 3m0c_C 543 GLNGVDIYSLVTE-NIQWPNGITLDLLS 569 (791)
T ss_dssp ETTSCCEEEEECS-SCSCEEEEEEETTT
T ss_pred ecCCCceEEEEeC-CCCCceEEEEecCC
Confidence 8877654333322 23456677776654
No 300
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=75.88 E-value=21 Score=39.80 Aligned_cols=77 Identities=12% Similarity=0.049 Sum_probs=45.2
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCC---CCEEEEEEC----C
Q 001202 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAFAVGWK----S 328 (1124)
Q Consensus 256 h~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPD---G~~Lasgs~----D 328 (1124)
...+..++|.|+|+++++ ..+|.|++++- + +. ..+.-. .......+....|+++|| +..|.++.. +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~-G~--~~~~~~--~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~ 100 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-S-GK--KLVASF--DVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG 100 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECS-S-CE--EEEEEC--CCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-C-Cc--eEeecc--ceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC
Confidence 345668999999986555 56699988863 2 33 222210 000012345789999998 444444332 2
Q ss_pred ----CcEEEEEcCCC
Q 001202 329 ----RGLTVWSVSGC 339 (1124)
Q Consensus 329 ----g~I~vWdv~~~ 339 (1124)
+.|..|+..+.
T Consensus 101 ~~~~~~v~r~~~~~~ 115 (354)
T 3a9g_A 101 GHIRNRVIRGRLDGS 115 (354)
T ss_dssp GCEEEEEEEEEECSS
T ss_pred CCcceEEEEEEECCC
Confidence 45667776554
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=74.68 E-value=58 Score=35.90 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=52.6
Q ss_pred EEEE---ccCCCEEEEEec-------------CCeEEEEEcC---CCCceeEEEeeccCCC-----CCCCCCCeEEEEEC
Q 001202 261 CASI---APEQQILAVGTR-------------RGVVELYDLA---ESASLIRTVSLYDWGY-----SMDDTGPVSCIAWT 316 (1124)
Q Consensus 261 ~va~---spdg~lLAsGs~-------------DgtV~vwd~~---~~~~~~~~l~~~~~g~-----~~~h~g~V~~lawS 316 (1124)
.+.+ .|+++++++... +..|..||+. + ++.+....+..... ...-.+....++..
T Consensus 67 Gl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~t-g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD 145 (334)
T 2p9w_A 67 GLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSEN-SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD 145 (334)
T ss_dssp EEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTT-CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC
T ss_pred EEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCC-CCEEEEecCccccccccccccccccCCceeEEC
Confidence 8899 688988886442 6789999988 5 55554444321100 00011347899999
Q ss_pred CCCCEEEEEECC-CcEEEEEcCCC
Q 001202 317 PDNSAFAVGWKS-RGLTVWSVSGC 339 (1124)
Q Consensus 317 PDG~~Lasgs~D-g~I~vWdv~~~ 339 (1124)
++|+.-++++.- +.|...+..+.
T Consensus 146 ~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 146 RDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp TTSCEEEEEEESSCEEEEECTTSC
T ss_pred CCCCEEEeCCCCCCeEEEEeCCCC
Confidence 999999998887 77776666665
No 302
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=74.12 E-value=1e+02 Score=33.40 Aligned_cols=94 Identities=11% Similarity=0.025 Sum_probs=55.4
Q ss_pred CeEEEEEccC-CCEEEEEecCCeEEEEEcCCCCce-eEEEeeccCCCCCCCCCCeEEEEECCCCC-EEEEEECCCcEEEE
Q 001202 258 DAVCASIAPE-QQILAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVW 334 (1124)
Q Consensus 258 ~~v~va~spd-g~lLAsGs~DgtV~vwd~~~~~~~-~~~l~~~~~g~~~~h~g~V~~lawSPDG~-~Lasgs~Dg~I~vW 334 (1124)
.++.++|++. +.+..+-..++.|..++.+. +.. ...+. . .......+++.+.+. ..++-...+.|.+.
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g-~~~~~~~~~-~-------~l~~p~glavd~~~g~ly~~d~~~~~I~~~ 106 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK-TESVQNVVV-S-------GLLSPDGLACDWLGEKLYWTDSETNRIEVS 106 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTS-SSCCCEEEE-E-------CCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccC-CCceEEEEc-C-------CCCCccEEEEEcCCCeEEEEECCCCEEEEE
Confidence 4558899985 55666666778899998876 321 11121 0 123356788887555 44555566889999
Q ss_pred EcCCCeeeEEeccCCcCceeeeEEcCC
Q 001202 335 SVSGCRLMSTIRQISLSSISSPIVKPN 361 (1124)
Q Consensus 335 dv~~~~l~~tl~~h~~~~V~s~~~sp~ 361 (1124)
+..+......+... ...-..+++.|.
T Consensus 107 ~~dG~~~~~l~~~~-~~~P~giavdp~ 132 (318)
T 3sov_A 107 NLDGSLRKVLFWQE-LDQPRAIALDPS 132 (318)
T ss_dssp ETTSCSCEEEECSS-CSSEEEEEEEGG
T ss_pred ECCCCcEEEEEeCC-CCCccEEEEeCC
Confidence 98875432222221 334455666654
No 303
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.51 E-value=1.7e+02 Score=37.19 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=32.3
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeec
Q 001202 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1124)
Q Consensus 259 ~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~ 298 (1124)
.++++..++..++.+-|.|+++|+|++.+ ++++.+..+.
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t-~~~v~t~dL~ 276 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLST-NQCVETIELS 276 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTT-TEEEEEEECC
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCC-CCeEeeeccc
Confidence 34778888888999999999999999998 8888776543
No 304
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=70.07 E-value=2.9 Score=34.28 Aligned_cols=41 Identities=22% Similarity=0.401 Sum_probs=34.3
Q ss_pred HHHHHhhhhHHH-HHhccCHHHHHHHHHhhccchhHHhHHHH
Q 001202 1067 LATLLRRSEVLF-DLFRHDMRLWEAYAITLQSYPAFAEYHDL 1107 (1124)
Q Consensus 1067 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1107 (1124)
+|+.-.+-+-|+ ..++.-..+|..=|+-|++||.|.+|-.|
T Consensus 8 l~satd~~e~LIr~~Vtd~~~~W~~~skkL~~~pE~~~yv~L 49 (69)
T 2k85_A 8 IATAKDKYEWLVSRIVKNHNENWLSVSRKMQASPEYQDYVYL 49 (69)
T ss_dssp TTHHHHHHHHHHHHHCSSSCSCHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhHHHHHHHhcCccHHHHHHH
Confidence 456666777777 77888899999999999999999999654
No 305
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=69.87 E-value=1.5e+02 Score=33.33 Aligned_cols=100 Identities=15% Similarity=0.057 Sum_probs=57.7
Q ss_pred CCCCeEEEEEccCCC-EEEEEecCCeEEEEEcCCCC--ceeEEEeeccCCCCCCCCCCeEEEEECCCCC-EEEEEECCCc
Q 001202 255 GSGDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRG 330 (1124)
Q Consensus 255 gh~~~v~va~spdg~-lLAsGs~DgtV~vwd~~~~~--~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~-~Lasgs~Dg~ 330 (1124)
+...++.++|++... +..+-..++.|..++++... ....++. . ........+++.+.+. ..++-...+.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~----~---~~~~~p~glavD~~~~~lY~~d~~~~~ 182 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----S---RDIQAPDGLAVDWIHSNIYWTDSVLGT 182 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE----C---SSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE----e---CCCCCcccEEEEecCCceEEEECCCCe
Confidence 334566999998654 45555567888888876411 1122222 1 0234567899988544 4455556688
Q ss_pred EEEEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 331 I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
|.+.+..+......+... ......+++.|.+
T Consensus 183 I~~~~~~g~~~~~l~~~~-~~~P~~iavdp~~ 213 (400)
T 3p5b_L 183 VSVADTKGVKRKTLFREN-GSKPRAIVVDPVH 213 (400)
T ss_dssp EEEECTTTCSEEEEEECS-SCCEEEEEEETTT
T ss_pred EEEEeCCCCceEEEEeCC-CCCcceEEEeccc
Confidence 999998876543333222 3445667777653
No 306
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=69.80 E-value=1.4e+02 Score=33.10 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=36.5
Q ss_pred EEEEcc--CCC--EEEEEec--CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE
Q 001202 261 CASIAP--EQQ--ILAVGTR--RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (1124)
Q Consensus 261 ~va~sp--dg~--lLAsGs~--DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs 326 (1124)
.+++.+ ++. ++++-.. +++|.+|+++..+.....+...+ + ..-...++++..|+|.+.++..
T Consensus 116 Gi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~-g---~~~~~pND~~v~~~G~fyvt~~ 183 (355)
T 3sre_A 116 GISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR-H---KLLPSVNDIVAVGPEHFYATND 183 (355)
T ss_dssp EEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC-C---TTCSSEEEEEEEETTEEEEEES
T ss_pred eeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc-c---CCCCCCceEEEeCCCCEEecCC
Confidence 444444 453 5555444 67899999876433322222111 2 1234578999999999888754
No 307
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=68.78 E-value=1.3e+02 Score=32.47 Aligned_cols=94 Identities=10% Similarity=0.017 Sum_probs=55.2
Q ss_pred eEEEEEccC-CCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE-C-CCcEEEEE
Q 001202 259 AVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-K-SRGLTVWS 335 (1124)
Q Consensus 259 ~v~va~spd-g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs-~-Dg~I~vWd 335 (1124)
+..+++.+. +.+..+-...+.|.+++.+. .....+.. . ....-..+++.|.+..|..+. . .+.|...+
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~---~----~~~~P~giavdp~~g~ly~td~~~~~~I~r~~ 151 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKVLFW---Q----ELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 151 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEC---S----SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCC--CcEEEEEe---C----CCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence 337888875 45555556678999999864 22333320 1 234468899999766555544 2 46788888
Q ss_pred cCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 336 v~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
..|.... ++...+...-+.++++|++
T Consensus 152 ~dG~~~~-~~~~~~l~~Pnglavd~~~ 177 (318)
T 3sov_A 152 MDGSSRF-IIINSEIYWPNGLTLDYEE 177 (318)
T ss_dssp TTSCSCE-EEECSSCSCEEEEEEETTT
T ss_pred cCCCCeE-EEEECCCCCccEEEEeccC
Confidence 7765322 2211112345667777754
No 308
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=68.66 E-value=1.1e+02 Score=33.62 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=17.3
Q ss_pred ceEEEee---eEEEEeCCCCeEEEEecC
Q 001202 367 EPLMSGT---SMMQWDEYGYRLYAIEEG 391 (1124)
Q Consensus 367 ~~l~sg~---~i~~W~~~~~~l~~~~~~ 391 (1124)
+.+..|. .-+.|++.+++++....+
T Consensus 190 ~i~a~G~rnp~gl~~d~~~g~l~~~d~g 217 (353)
T 2g8s_A 190 EIWSYGIRNPQGMAMNPWSNALWLNEHG 217 (353)
T ss_dssp TEEEECCSEEEEEEEETTTTEEEEEEEC
T ss_pred cEEEEcCcCccceEEECCCCCEEEEecC
Confidence 4444443 567799888888888655
No 309
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=68.27 E-value=1.3e+02 Score=32.26 Aligned_cols=98 Identities=15% Similarity=0.055 Sum_probs=56.1
Q ss_pred CCeEEEEEccCC-CEEEEEecCCeEEEEEcCCC--CceeEEEeeccCCCCCCCCCCeEEEEECCCCCEE-EEEECCCcEE
Q 001202 257 GDAVCASIAPEQ-QILAVGTRRGVVELYDLAES--ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKSRGLT 332 (1124)
Q Consensus 257 ~~~v~va~spdg-~lLAsGs~DgtV~vwd~~~~--~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~L-asgs~Dg~I~ 332 (1124)
..+..++|++++ .+..+-..++.|..++.+.. +.....+- . . .-.....+++.+.+..| ++-..++.|.
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~--~-~----~~~~p~glavd~~~~~ly~~d~~~~~I~ 102 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--S-R----DIQAPDGLAVDWIHSNIYWTDSVLGTVS 102 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE--C-S----SCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE--e-C----CCCCcCEEEEeecCCeEEEEECCCCEEE
Confidence 445689999865 45556566789999988641 01222221 0 0 12335788998765545 4445678999
Q ss_pred EEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 333 vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
+.+..+......+... ......+++.|.+
T Consensus 103 ~~~~~g~~~~~~~~~~-~~~P~~iavdp~~ 131 (316)
T 1ijq_A 103 VADTKGVKRKTLFREN-GSKPRAIVVDPVH 131 (316)
T ss_dssp EEETTSSSEEEEEECT-TCCEEEEEEETTT
T ss_pred EEeCCCCceEEEEECC-CCCcceEEeCCCC
Confidence 9999876433222221 2345667777654
No 310
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=67.10 E-value=55 Score=34.00 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=39.5
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCCCc--e---eEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEE
Q 001202 261 CASIAPEQQILAVGTRRGVVELYDLAESAS--L---IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~DgtV~vwd~~~~~~--~---~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~ 332 (1124)
++.|.|+|.+.|+ .||.|.-++-.+.+. . -.++.-. -=..+..|.+.|+|..-|+. |+.+.
T Consensus 92 a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~-------gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 92 FLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSG-------GWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp EEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECS-------SGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccC-------CCCceEEEEECCCceEEEEe--CCcEE
Confidence 8999999999998 679876555422111 0 1111100 01357999999999988888 66643
No 311
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=67.05 E-value=2.5e+02 Score=34.86 Aligned_cols=100 Identities=15% Similarity=0.064 Sum_probs=58.0
Q ss_pred CCCCeEEEEEccC-CCEEEEEecCCeEEEEEcCCCC--ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEE-EEECCCc
Q 001202 255 GSGDAVCASIAPE-QQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKSRG 330 (1124)
Q Consensus 255 gh~~~v~va~spd-g~lLAsGs~DgtV~vwd~~~~~--~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~La-sgs~Dg~ 330 (1124)
+...++.++|++. +.+..+-..++.|+.++++... .....+. . . ..+....|++.+.+..|. +-+..+.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi--~-~----~l~~P~GLAvD~~~~~LY~tD~~~~~ 494 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--S-R----DIQAPDGLAVDWIHSNIYWTDSVLGT 494 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE--C-S----SCSCCCEEEEETTTTEEEEEETTTTE
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE--e-c----CCCCcceeeeeecCCcEEEEecCCCe
Confidence 4455568999985 5555566667888888886411 1111221 0 0 234457789988776554 4455688
Q ss_pred EEEEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 331 I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
|.+.++.+......+.. .......+++.|..
T Consensus 495 I~v~~ldG~~~~~l~~~-~l~~P~gIaVDp~~ 525 (791)
T 3m0c_C 495 VSVADTKGVKRKTLFRE-NGSKPRAIVVDPVH 525 (791)
T ss_dssp EEEEETTSSSEEEEEEC-TTCCEEEEEEETTT
T ss_pred EEEEeCCCCeEEEEEeC-CCCCcceEEEecCC
Confidence 99999987653333322 23456677777653
No 312
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=66.92 E-value=66 Score=37.09 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=38.2
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCC---CCEEEEE
Q 001202 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAFAVG 325 (1124)
Q Consensus 257 ~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPD---G~~Lasg 325 (1124)
..+..++|.|+|+++++-...+.|++++..+ +.......+.+.-......+....|+|+|| +..|..+
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPES-GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCC-CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 4566899999999777654445677776543 332221121110000112466889999995 4444433
No 313
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=66.77 E-value=80 Score=36.89 Aligned_cols=106 Identities=8% Similarity=0.127 Sum_probs=55.4
Q ss_pred EEEEec--CCcEEEEEecCCceEeeecccccee----cC--CC-CeEEEEE-------ccCCCEEEEEecCC-----e--
Q 001202 223 LFVLYS--NGQLMSCSVSKKGLKLAEFIKIDKE----LG--SG-DAVCASI-------APEQQILAVGTRRG-----V-- 279 (1124)
Q Consensus 223 ~~~~s~--dG~~~~~~~~d~~i~~wd~~~~~~~----~g--h~-~~v~va~-------spdg~lLAsGs~Dg-----t-- 279 (1124)
.+++.| +++++++....+.++..|....... .+ .. .+..++| ++++..|.++...+ .
T Consensus 143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~ 222 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPS 222 (496)
T ss_dssp EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEE
T ss_pred EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCce
Confidence 344554 2445554443344555554432221 11 12 2448999 99998555554443 2
Q ss_pred EEEEEcCCCCcee-----EEEeeccCCCCCCCCCCeEEEEECCC-CCEEEEEECCCcEEEEEcC
Q 001202 280 VELYDLAESASLI-----RTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVS 337 (1124)
Q Consensus 280 V~vwd~~~~~~~~-----~~l~~~~~g~~~~h~g~V~~lawSPD-G~~Lasgs~Dg~I~vWdv~ 337 (1124)
|.+.+....+... ..+. .+. | ...++.+|+ |..+++-..++.|..+|+.
T Consensus 223 V~~i~r~~~G~~~~~~~~~~v~--~~~----~---p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 223 VYIIKRNADGTFDDRSDIQLIA--AYK----Q---CNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EEEEECCTTSCCSTTSCEEEEE--EES----C---CCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred EEEEecCCCCceeecccceeec--cCC----C---ceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 4455433312221 2222 111 2 246788995 5566666677889999987
No 314
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=65.52 E-value=52 Score=41.97 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=34.2
Q ss_pred CCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEec
Q 001202 308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1124)
Q Consensus 308 g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~ 346 (1124)
..+.+++..+|..++++-+.|+++||||+.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 357888889999999999999999999999999887653
No 315
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=65.26 E-value=84 Score=34.86 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=46.9
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCC----CCEEEEEE--CC
Q 001202 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD----NSAFAVGW--KS 328 (1124)
Q Consensus 255 gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPD----G~~Lasgs--~D 328 (1124)
+...+..++|.|||+++++-...|.|++++.+. +.. ..+.... .......+....|+++|| |...++-+ .+
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~-g~~-~~v~~~~-~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKT-GRK-TELGEVP-GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCE-EEEEECT-TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCC-CcE-eeecccC-ceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 445666899999999877765589998887544 332 2221110 011123566899999996 44333322 33
Q ss_pred CcEEEEEcCC
Q 001202 329 RGLTVWSVSG 338 (1124)
Q Consensus 329 g~I~vWdv~~ 338 (1124)
+.|.-|...+
T Consensus 107 ~~v~R~~~~~ 116 (347)
T 3das_A 107 NRIVRMLYDE 116 (347)
T ss_dssp EEEEEEEBCT
T ss_pred CEEEEEEeCC
Confidence 4455555544
No 316
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=63.38 E-value=30 Score=42.50 Aligned_cols=52 Identities=10% Similarity=0.014 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE-CCCcEEEEEcCC
Q 001202 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSG 338 (1124)
Q Consensus 277 DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs-~Dg~I~vWdv~~ 338 (1124)
.+.|+..+++. ......+. ..+.+..|+|.+++..|..+. ..+.|..+++.+
T Consensus 385 ~~~I~~id~~~-~~~~~~~~---------~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g 437 (699)
T 1n7d_A 385 RHEVRKMTLDR-SEYTSLIP---------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 437 (699)
T ss_dssp TTC-CEECTTS-CCEECCSC---------CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCC
T ss_pred ccceEEEeCCC-Ccceeeec---------cCcceEEEccccccCeEEEEecCCCeEEEEecCC
Confidence 35677777654 32221111 223456789999776665554 457898998876
No 317
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=63.36 E-value=2.2e+02 Score=33.07 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=45.7
Q ss_pred cCCCEEEEEecCCeEEEEEcCCCCceeEEEeec----------cCCCCC------CCCCCeEEEEECCC-CCEEEEEECC
Q 001202 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLY----------DWGYSM------DDTGPVSCIAWTPD-NSAFAVGWKS 328 (1124)
Q Consensus 266 pdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~----------~~g~~~------~h~g~V~~lawSPD-G~~Lasgs~D 328 (1124)
++|.+.++=+.++.|+.++. + + .+.++.-. .+|+.. +.-..-..|+++++ |...++=..+
T Consensus 389 ~~g~lyVaD~~N~rIr~i~~-~-G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N 465 (496)
T 3kya_A 389 EEYDFYFVDRLNFCVRKVTP-E-G-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVG 465 (496)
T ss_dssp CCEEEEEEEGGGTEEEEECT-T-C-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTT
T ss_pred CCCeEEEEECCCCEEEEEeC-C-C-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCC
Confidence 56777777777889999883 2 4 35555421 012110 01123578999997 7666666667
Q ss_pred CcEEEEEcCCCeeeE
Q 001202 329 RGLTVWSVSGCRLMS 343 (1124)
Q Consensus 329 g~I~vWdv~~~~l~~ 343 (1124)
+.|+.+++.+..+..
T Consensus 466 ~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 466 HTIRTISMEQEENVA 480 (496)
T ss_dssp TEEEEEEECCCC---
T ss_pred CEEEEEECCCCcccc
Confidence 899999998765443
No 318
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=61.21 E-value=29 Score=42.72 Aligned_cols=130 Identities=8% Similarity=0.027 Sum_probs=64.2
Q ss_pred EEEEec-CCcEEEEEecCCceEeeeccc----cc--eec--CCCCeEEEEEccC-CCEEEEEecCCeEEEEEcCCCCcee
Q 001202 223 LFVLYS-NGQLMSCSVSKKGLKLAEFIK----ID--KEL--GSGDAVCASIAPE-QQILAVGTRRGVVELYDLAESASLI 292 (1124)
Q Consensus 223 ~~~~s~-dG~~~~~~~~d~~i~~wd~~~----~~--~~~--gh~~~v~va~spd-g~lLAsGs~DgtV~vwd~~~~~~~~ 292 (1124)
.+++.+ +++++++....+.|...+... .. ... +...+..+++.+. +.+.++-...+.|.+++.+. ...
T Consensus 410 gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg--~~~ 487 (699)
T 1n7d_A 410 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKR 487 (699)
T ss_dssp CCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS--CCE
T ss_pred EEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC--Cce
Confidence 344555 344455444555666555432 11 111 1122336788864 45555555678899988764 333
Q ss_pred EEEeeccCCCCCCCCCCeEEEEECCCCCEEE-EEECC-CcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKS-RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 293 ~~l~~~~~g~~~~h~g~V~~lawSPDG~~La-sgs~D-g~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
.++... .......|++.|++..|. +-+.. +.|.+.++.+... .++.......-+.++++|++
T Consensus 488 ~~l~~~-------~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~~~~l~~PnGlavd~~~ 551 (699)
T 1n7d_A 488 KTLFRE-------QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLS 551 (699)
T ss_dssp EEECCC-------SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEESCSSCSSCCCEEECTTT
T ss_pred EEEEeC-------CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEEeCCCCCccEEEEeccC
Confidence 333210 112346789999655444 43333 6777777765432 22211112334456666654
No 319
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=58.26 E-value=1.9e+02 Score=30.62 Aligned_cols=65 Identities=15% Similarity=0.288 Sum_probs=38.8
Q ss_pred CCCEEEEEcCC-----CeE-EEEcCCCcEEEecCcCceeeeEEEEEEecCCEEEEEEEecCCCeEEEEEeeC
Q 001202 463 DGMFLAVAGLH-----GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (1124)
Q Consensus 463 dG~~lAvag~d-----G~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~~~~~~elrly~~ 528 (1124)
+++.++.||.+ ..+ .||+.+++|.........+.. .......+.++++++........++.+|+.
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA-LGITVHQGRIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEEECCBCSSCBCCEEEEEET
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc-eEEEEECCEEEEEcCcCCCcccceEEEEcC
Confidence 78888888875 346 999999999987644332211 111223444556665543333446667766
No 320
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=57.79 E-value=52 Score=34.15 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=18.9
Q ss_pred ceeEEEEecCCcEEEEEeCCCeEEEEEee
Q 001202 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQ 97 (1124)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~dg~l~i~~v~ 97 (1124)
....++|.|||.+-|| .+|. ||...
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~--Ly~~~ 66 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDK--IYKGT 66 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTE--EEEES
T ss_pred cceeEEECCCccEEEE--eCCe--EEEEC
Confidence 3468999999998888 6665 56554
No 321
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=57.06 E-value=2.4e+02 Score=31.47 Aligned_cols=95 Identities=9% Similarity=-0.019 Sum_probs=56.4
Q ss_pred CeEEEEEccC-CCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE-C-CCcEEEE
Q 001202 258 DAVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-K-SRGLTVW 334 (1124)
Q Consensus 258 ~~v~va~spd-g~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs-~-Dg~I~vW 334 (1124)
.+..+++.+. +.+..+-...+.|.+.+++. ....++.. . .-.....|+..|.+..|..+. . .+.|...
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g--~~~~~l~~---~----~~~~P~~iavdp~~g~ly~td~~~~~~I~~~ 230 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFR---E----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 230 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTT--CSEEEEEE---C----SSCCEEEEEEETTTTEEEEEECSSSCCEEEE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCC--CceEEEEe---C----CCCCcceEEEecccCeEEEEeCCCCCEEEEE
Confidence 3448899984 55555656678899888864 32332221 1 223468999999666555443 3 3678888
Q ss_pred EcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 335 SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 335 dv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
+..|......+... ...-+.++++|++
T Consensus 231 ~~dG~~~~~~~~~~-l~~P~glavd~~~ 257 (400)
T 3p5b_L 231 GLNGVDIYSLVTEN-IQWPNGITLDLLS 257 (400)
T ss_dssp ETTSCSCEEEECSS-CSCEEEEEEETTT
T ss_pred eCCCCccEEEEECC-CCceEEEEEEeCC
Confidence 88775433222221 3445667777654
No 322
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=56.44 E-value=2e+02 Score=30.22 Aligned_cols=27 Identities=37% Similarity=0.639 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCC-----eE-EEEcCCCcEEEec
Q 001202 463 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFG 489 (1124)
Q Consensus 463 dG~~lAvag~dG-----~v-lwd~~sg~wk~f~ 489 (1124)
+|+.++.||.++ .+ .||+.+++|....
T Consensus 253 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 285 (301)
T 2vpj_A 253 RGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVT 285 (301)
T ss_dssp TTEEEEECCBCSSSBEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEcCcCCCcccccEEEEcCCCCeEEEcC
Confidence 788888888763 46 8999999998753
No 323
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=47.10 E-value=3e+02 Score=29.62 Aligned_cols=68 Identities=10% Similarity=0.219 Sum_probs=37.3
Q ss_pred EccCCCEEEEEcCC----------------------CeE-EEEcCCCcEEEecCcCceeeeEEEEEEecCCEEEEEEEec
Q 001202 460 ASKDGMFLAVAGLH----------------------GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYID 516 (1124)
Q Consensus 460 ~SpdG~~lAvag~d----------------------G~v-lwd~~sg~wk~f~~~~~e~~~~v~gl~W~~~~liv~~~~~ 516 (1124)
...+++.++.||.+ ..+ +||+.+++|...+.....+.. ...+...+.++|+|+++.
T Consensus 249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY-GVSLPWNNSLLIIGGETA 327 (357)
T ss_dssp EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS-SEEEEETTEEEEEEEECG
T ss_pred EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc-ceeEEeCCEEEEEeeeCC
Confidence 34477888888843 135 899999999987654433321 222345566777887754
Q ss_pred CCC-eEEEEEeeC
Q 001202 517 SSN-TYELLFYPR 528 (1124)
Q Consensus 517 ~~~-~~elrly~~ 528 (1124)
... ..++-++..
T Consensus 328 ~~~~~~~v~~l~~ 340 (357)
T 2uvk_A 328 GGKAVTDSVLITV 340 (357)
T ss_dssp GGCEEEEEEEEEC
T ss_pred CCCEeeeEEEEEE
Confidence 322 234544444
No 324
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=45.02 E-value=3.1e+02 Score=29.21 Aligned_cols=93 Identities=9% Similarity=-0.026 Sum_probs=54.0
Q ss_pred EEEEEccCC-CEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEE-CC-CcEEEEEc
Q 001202 260 VCASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KS-RGLTVWSV 336 (1124)
Q Consensus 260 v~va~spdg-~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs-~D-g~I~vWdv 336 (1124)
..+++.+.+ .+..+-..++.|.+.+.+. ....++.. . .-.....++..|++..|..+. .. +.|...+.
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g--~~~~~~~~---~----~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~ 150 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFR---E----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 150 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTS--SSEEEEEE---C----TTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCC--CceEEEEE---C----CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC
Confidence 378888754 4555556788999999864 32333321 1 223468999999666554444 33 67888887
Q ss_pred CCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 337 SGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 337 ~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
.+... ..+........+.++++|++
T Consensus 151 dG~~~-~~~~~~~~~~P~gla~d~~~ 175 (316)
T 1ijq_A 151 NGVDI-YSLVTENIQWPNGITLDLLS 175 (316)
T ss_dssp TSCCE-EEEECSSCSCEEEEEEETTT
T ss_pred CCCCe-EEEEECCCCCceEEEEeccC
Confidence 76532 22211112345566666654
No 325
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=44.85 E-value=60 Score=42.36 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=32.8
Q ss_pred CeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEec
Q 001202 309 PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1124)
Q Consensus 309 ~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~ 346 (1124)
.+.+++..++..++++-+.|+++||||+.++.++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45667778899999999999999999999999887753
No 326
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=44.74 E-value=4.7e+02 Score=31.21 Aligned_cols=93 Identities=9% Similarity=0.109 Sum_probs=55.6
Q ss_pred eEEEEEccCCC-EEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCC-CCEEEEEEC-CCcEEEEE
Q 001202 259 AVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWK-SRGLTVWS 335 (1124)
Q Consensus 259 ~v~va~spdg~-lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPD-G~~Lasgs~-Dg~I~vWd 335 (1124)
+..+|+.+.+. +..+-...+.|.+.+++. +....+.. . .-..-..|++.|. |....+-+. .+.|...+
T Consensus 82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG--~~~~~l~~---~----~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~ 152 (628)
T 4a0p_A 82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDG--QHRQVLVW---K----DLDSPRALALDPAEGFMYWTEWGGKPKIDRAA 152 (628)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTS--TTCEEEEC---S----SCCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred cceEEEEeCCCEEEEEECCCCEEEEEecCC--CcEEEEEe---C----CCCCcccEEEccCCCeEEEeCCCCCCEEEEEe
Confidence 34788887655 455555678899998864 22333321 1 2234589999995 444444433 46777788
Q ss_pred cCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 336 v~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
+.|........+ ...-+.+++.+++
T Consensus 153 ~dG~~~~~l~~~--~~~P~GlalD~~~ 177 (628)
T 4a0p_A 153 MDGSERTTLVPN--VGRANGLTIDYAK 177 (628)
T ss_dssp TTSCSCEEEECS--CSSEEEEEEETTT
T ss_pred CCCCceEEEECC--CCCcceEEEcccc
Confidence 877653333322 3456778887764
No 327
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=43.81 E-value=4.8e+02 Score=31.05 Aligned_cols=80 Identities=10% Similarity=0.060 Sum_probs=46.4
Q ss_pred CeEEEEEccCCCEEE-EEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEc
Q 001202 258 DAVCASIAPEQQILA-VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1124)
Q Consensus 258 ~~v~va~spdg~lLA-sGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv 336 (1124)
.+..++++++++.|. +=...+.|..++++. . ..+.+..... .|. ..|++..| ....+-+.++.|...|.
T Consensus 172 ~P~Glald~~~~~LY~aD~~~~~I~~~~~dG-~-~~~~~~~~~~----~~P---~gi~~~~~-~ly~td~~~~~V~~~d~ 241 (619)
T 3s94_A 172 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-T-NRQAVVKGSL----PHP---FALTLFED-ILYWTDWSTHSILACNK 241 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTCCEEEESSSC-C-EEC-------------C---CCEEESSS-EEEEECTTTCSEEEEES
T ss_pred CCcEEEEEccCCEEEEEeCCCCeEEEecCCC-C-ccEEEEeCCC----CCc---eEEEEeCC-EEEEecCCCCEEEEEEC
Confidence 445899998755544 444567788888764 2 2222210000 132 35677666 55666667789999999
Q ss_pred CCCeeeEEecc
Q 001202 337 SGCRLMSTIRQ 347 (1124)
Q Consensus 337 ~~~~l~~tl~~ 347 (1124)
.++.....+..
T Consensus 242 ~tg~~~~~i~~ 252 (619)
T 3s94_A 242 YTGEGLREIHS 252 (619)
T ss_dssp SSCCCCEECCS
T ss_pred CCCcccEEEec
Confidence 88766555543
No 328
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=42.11 E-value=3.9e+02 Score=29.51 Aligned_cols=119 Identities=12% Similarity=0.014 Sum_probs=58.7
Q ss_pred eEEEEEecCCcceEEEEecCCcEEEEEecCCc-eE---eeecccccee--cCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 001202 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG-LK---LAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELY 283 (1124)
Q Consensus 210 ~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~-i~---~wd~~~~~~~--~gh~~~v~va~spdg~lLAsGs~DgtV~vw 283 (1124)
.|.+++.. ....++++.||+++..+.+... +- .-+...+... ......+.++........+.-..||+|..|
T Consensus 160 ~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~w 237 (389)
T 3kci_A 160 EVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSW 237 (389)
T ss_dssp CEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEE
T ss_pred eEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEE
Confidence 46555443 3467888999999998875421 00 0000111111 111122355554433444455689999999
Q ss_pred EcCCCCce--------eEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcC
Q 001202 284 DLAESASL--------IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (1124)
Q Consensus 284 d~~~~~~~--------~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~ 337 (1124)
--...+++ .....+... ....|..|+... .+-+.-..||.|..|-..
T Consensus 238 G~n~~GqLG~g~~~~~~~p~~v~~~-----~~~~v~~v~~G~--~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 238 GDGDYGKLGRGGSDGCKVPMKIDSL-----TGLGVVKVECGS--QFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp ECCGGGTTSSSSCCCEEEEEECGGG-----TTSCEEEEEEET--TEEEEEETTSCEEEEECC
T ss_pred eCCCCCCCCCCCCCCccccEEeccc-----CCCcEEEEeCCC--CEEEEEeCCCeEEEEeCC
Confidence 76542221 011111110 122366665433 334444678888888653
No 329
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=40.94 E-value=3.3e+02 Score=28.38 Aligned_cols=27 Identities=30% Similarity=0.704 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCC-----eE-EEEcCCCcEEEec
Q 001202 463 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFG 489 (1124)
Q Consensus 463 dG~~lAvag~dG-----~v-lwd~~sg~wk~f~ 489 (1124)
+|+.++.||.++ .+ .||+.+++|....
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence 788888888764 36 9999999999875
No 330
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=40.12 E-value=4e+02 Score=35.43 Aligned_cols=77 Identities=9% Similarity=0.208 Sum_probs=47.3
Q ss_pred CceEEEEe-eCCeEEEEEcCCcEEEEecCCCceeEEEEeeChHHHhhhcceeEEEEecCCcEEEEEe-------CCCeEE
Q 001202 21 SQQIIYFK-VNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-------SSLYLH 92 (1124)
Q Consensus 21 ~~~iv~fS-~dg~llA~~~~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t-------~dg~l~ 92 (1124)
+++|+.+. -+.+.++.++++.|+-|+......|..-+.|+.. +. .-.+..-.-+||.+++++.+ -.|.+.
T Consensus 105 ~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~-L~-~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQ 182 (1630)
T 1xi4_A 105 TDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSS-LA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 182 (1630)
T ss_pred CCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchh-cc-cCeeEEeeeCCCCCeEEEEeeccCCCcccceee
Confidence 46777652 3346789999999999999533344333444432 22 12234445688888877543 337788
Q ss_pred EEEeeec
Q 001202 93 IFKVQIT 99 (1124)
Q Consensus 93 i~~v~~~ 99 (1124)
+|+++..
T Consensus 183 LyS~er~ 189 (1630)
T 1xi4_A 183 LYSVDRK 189 (1630)
T ss_pred eeecccc
Confidence 8888643
No 331
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=39.13 E-value=3.6e+02 Score=28.20 Aligned_cols=27 Identities=26% Similarity=0.571 Sum_probs=21.7
Q ss_pred CCCEEEEEcCC-----CeE-EEEcCCCcEEEec
Q 001202 463 DGMFLAVAGLH-----GLI-LYDIRQKKWRVFG 489 (1124)
Q Consensus 463 dG~~lAvag~d-----G~v-lwd~~sg~wk~f~ 489 (1124)
+++.++.||.+ ..+ .||+.+++|+...
T Consensus 247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~ 279 (306)
T 3ii7_A 247 GSIVYVLAGFQGVGRLGHILEYNTETDKWVANS 279 (306)
T ss_dssp TTEEEEEECBCSSSBCCEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCC
Confidence 78888889865 456 8999999998753
No 332
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=36.76 E-value=2.1e+02 Score=37.24 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=31.2
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeec
Q 001202 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~ 298 (1124)
+++..++..++.+-|.|+++|+|++.+ ++++.+..+.
T Consensus 242 s~~~~~~~~~lftL~~D~~LRiWsl~t-~~~v~t~DL~ 278 (1139)
T 4fhn_B 242 SMIFLSTYNVLVMLSLDYKLKVLDLST-NQCVETIELS 278 (1139)
T ss_dssp CCEEETTTTEEEEEBTTCEEEEEETTT-TEEEEEEECC
T ss_pred EeeccCCccEEEEEeCCCEEEEEECCC-CCeEEeechh
Confidence 666778888999999999999999998 8888776654
No 333
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=35.01 E-value=6.4e+02 Score=29.94 Aligned_cols=95 Identities=11% Similarity=0.081 Sum_probs=55.4
Q ss_pred CeEEEEEccCCC-EEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEE-EEEEC-CCcEEEE
Q 001202 258 DAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWK-SRGLTVW 334 (1124)
Q Consensus 258 ~~v~va~spdg~-lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~L-asgs~-Dg~I~vW 334 (1124)
.+-.+|+.+.++ +..+-..++.|.+.+.+. +...++... .-..-..|++.|.+..| .+-+. .+.|..-
T Consensus 85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG--~~~~~l~~~-------~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~ 155 (619)
T 3s94_A 85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKVLFWQ-------ELDQPRAIALDPSSGFMYWTDWGEVPKIERA 155 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS-------SCSCCCCEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CcCeEEEEecCCEEEEEeCCCCEEEEEECCC--CCEEEEEeC-------CCCCCceEEEecCCCeEEEeccCCCCEEEEE
Confidence 444899999655 555556678999999874 333333211 22335789999975544 44433 3566666
Q ss_pred EcCCCeeeEEeccCCcCceeeeEEcCCC
Q 001202 335 SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1124)
Q Consensus 335 dv~~~~l~~tl~~h~~~~V~s~~~sp~~ 362 (1124)
+..|.......... ...-+.+++.+++
T Consensus 156 ~~dG~~~~~l~~~~-~~~P~Glald~~~ 182 (619)
T 3s94_A 156 GMDGSSRFIIINSE-IYWPNGLTLDYEE 182 (619)
T ss_dssp ETTSCSCEEEECSS-CSSEEEEEEETTT
T ss_pred ECCCCceEEEEeCC-CCCCcEEEEEccC
Confidence 77665433222221 3345677777754
No 334
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=32.07 E-value=4.9e+02 Score=27.71 Aligned_cols=70 Identities=7% Similarity=0.063 Sum_probs=45.9
Q ss_pred EEEEccCCCEEEEEe--cCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC-CCcEEEEEcC
Q 001202 261 CASIAPEQQILAVGT--RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVS 337 (1124)
Q Consensus 261 ~va~spdg~lLAsGs--~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~-Dg~I~vWdv~ 337 (1124)
+.+|++++..|+-.. .++.-.||.++..++....+. . +. + .+|+|+|+.|.-.+. ...|.+-++.
T Consensus 108 ~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt----~----~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~ 175 (302)
T 3s25_A 108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIK----N----HY--L--FTCNTSDRYFYYNNPKNGQLYRYDTA 175 (302)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEE----S----SC--C--CCSEEETTEEEEECTTTCCEEEEETT
T ss_pred ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEe----C----CC--c--eEeeEECCEEEEEeCCCceEEEEECC
Confidence 347888999999876 466666777665455555554 1 21 2 456889998875554 5677777777
Q ss_pred CCeee
Q 001202 338 GCRLM 342 (1124)
Q Consensus 338 ~~~l~ 342 (1124)
++...
T Consensus 176 g~~~~ 180 (302)
T 3s25_A 176 SQSEA 180 (302)
T ss_dssp TTEEE
T ss_pred CCCEE
Confidence 76543
No 335
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=31.31 E-value=7.3e+02 Score=29.49 Aligned_cols=97 Identities=11% Similarity=0.053 Sum_probs=57.8
Q ss_pred CCCCeEEEEEccCC-CEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEE-EEECCCcEE
Q 001202 255 GSGDAVCASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKSRGLT 332 (1124)
Q Consensus 255 gh~~~v~va~spdg-~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~La-sgs~Dg~I~ 332 (1124)
+...++.++|+++. .+..+-..++.|..++++. .. ..++-. .+ .+....+++.+.+..|. +-+..+.|.
T Consensus 35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g-~~-~~~v~~--~g-----~~~P~GlAvD~~~~~LY~tD~~~~~I~ 105 (628)
T 4a0p_A 35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNG-SA-LEHVVE--FG-----LDYPEGMAVDWLGKNLYWADTGTNRIE 105 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CS-CEEEEC--SS-----CSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCceEEEEEECCCCEEEEEECCCCeEEEEECCC-CC-cEEEEe--CC-----CCCcceEEEEeCCCEEEEEECCCCEEE
Confidence 33456699999865 4555656788998888865 32 232220 01 23456788887766554 444567889
Q ss_pred EEEcCCCeeeEEeccCCcCceeeeEEcCC
Q 001202 333 VWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (1124)
Q Consensus 333 vWdv~~~~l~~tl~~h~~~~V~s~~~sp~ 361 (1124)
+-+..|... .++.......-..+++.|.
T Consensus 106 v~~~dG~~~-~~l~~~~l~~P~~iavdp~ 133 (628)
T 4a0p_A 106 VSKLDGQHR-QVLVWKDLDSPRALALDPA 133 (628)
T ss_dssp EEETTSTTC-EEEECSSCCCEEEEEEETT
T ss_pred EEecCCCcE-EEEEeCCCCCcccEEEccC
Confidence 999877642 2222112344566777664
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=31.11 E-value=4.8e+02 Score=28.50 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=36.5
Q ss_pred CEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEE--CC-CCCEEEEE-ECCCcEEEEEcCCCeeeE
Q 001202 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW--TP-DNSAFAVG-WKSRGLTVWSVSGCRLMS 343 (1124)
Q Consensus 269 ~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~law--SP-DG~~Lasg-s~Dg~I~vWdv~~~~l~~ 343 (1124)
.++.+|+.||.|.-.|.++ ++..-++.... ..++....- .+ +|..++.. ..||.+..++..+|....
T Consensus 11 ~~V~v~t~dG~l~Ald~~t-G~~~W~~~~~~-------~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~ 81 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRN-GHIIWSIEPEN-------FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL 81 (339)
T ss_dssp EEEEEEETTSCEEEEETTT-TEEEEEECGGG-------SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE
T ss_pred CEEEEEeCCCeEEEEECCC-CcEEEEecCCc-------cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe
Confidence 3677788888888888776 66555554220 011111000 01 33344443 578888888877765443
No 337
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=31.01 E-value=40 Score=39.83 Aligned_cols=106 Identities=11% Similarity=0.053 Sum_probs=63.8
Q ss_pred CCcceEEEEecCCcEEEEEe-cCCceEeeeccccce-----------------ecCCCCeEEEEEccCCCEEEEEecCCe
Q 001202 218 LPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKIDK-----------------ELGSGDAVCASIAPEQQILAVGTRRGV 279 (1124)
Q Consensus 218 ~~~~~~~~~s~dG~~~~~~~-~d~~i~~wd~~~~~~-----------------~~gh~~~v~va~spdg~lLAsGs~Dgt 279 (1124)
|.....+-++|||++++++. .+.++.+.+..+... ..| .++...+|.++|....+-.-|.+
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G-lGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG-LGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-SCEEEEEECSSSEEEEEETTTTE
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-CcccEEEECCCCceEeeeeecce
Confidence 34445678899999988766 455666666553111 022 34558899999966667778999
Q ss_pred EEEEEcCCC-----C----ceeEEEeeccCCCCCCCCCCeEEEEECCCCCEEEEEEC
Q 001202 280 VELYDLAES-----A----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1124)
Q Consensus 280 V~vwd~~~~-----~----~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~ 327 (1124)
|.-|+++.. + ..+..+.. .|.++|......=.-.|||++|++...
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv---~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDV---HYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEEC---SSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred EEEEeccHHHHHhcCccCCeeeecccc---ccCCcccccCCCccCCCCccEEEEecc
Confidence 999999751 1 22333332 222334211111122589999998754
No 338
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=28.76 E-value=5.3e+02 Score=27.05 Aligned_cols=207 Identities=9% Similarity=-0.034 Sum_probs=0.0
Q ss_pred ceEEEEecCCcEEEEEecCCceEeeeccccceecCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccC
Q 001202 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (1124)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~ 300 (1124)
...+++. ||+++..+.++. ..-+.......+.+.++......++. . ||.|..|-....+++-....
T Consensus 34 ~h~~~l~-~G~v~~wG~n~~------Gqlg~p~~~~~~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~Gqlg~P~~---- 99 (282)
T 3qhy_B 34 FHGLALK-GGKVLGWGANLN------GQLTMPAATQSGVDAIAAGNYHSLAL--K-DGEVIAWGGNEDGQTTVPAE---- 99 (282)
T ss_dssp SEEEEEE-TTEEEEEECCSS------STTSCCGGGGSCCCEEEECSSEEEEE--E-TTEEEEEECCTTSTTCCCGG----
T ss_pred CeEEEEE-CCEEEEEeCCCC------CCCCCCccCCCCEEEEEeCCCEEEEE--E-CCEEEEeeCCCCCCCCCCcc----
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCCCeeeEEeccCCcCceeeeEEcCCCCCCcceEEEeeeEEEEeC
Q 001202 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDE 380 (1124)
Q Consensus 301 g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s~~~sp~~~~~~~~l~sg~~i~~W~~ 380 (1124)
-...|..|+-..+-...++ ||.|..|-....-.+-.-... ...|..++..... ..+++...+..|..
T Consensus 100 -----~~~~v~~ia~G~~hs~al~---~G~v~~wG~n~~gqlg~~~~~-~~~i~~i~~G~~~----~~~l~~G~v~~wG~ 166 (282)
T 3qhy_B 100 -----ARSGVDAIAAGAWASYALK---DGKVIAWGDDSDGQTTVPAEA-QSGVTALDGGVYT----ALAVKNGGVIAWGD 166 (282)
T ss_dssp -----GSSSEEEEEEETTEEEEEE---TTEEEEEECCTTSTTSCCGGG-GSSEEEEEECSSE----EEEEETTEEEEEEC
T ss_pred -----cCCCeEEEECcCCEEEEEe---CCeEEEecCCCCCcCCCCccC-CCCeEEEEcccCE----EEEEECCEEEEecC
Q ss_pred CCCeEEEEecCCcceEEEEec-cceEEeeccCCceeeeEeeecCCeEEEeecCCCccceeeecccceeeccCCCceEEEE
Q 001202 381 YGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVA 459 (1124)
Q Consensus 381 ~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~l~~~~~~l~l~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va 459 (1124)
..+..+-....-...|..+.. ....+.- .++.+..|-.....+ ...-......|..++
T Consensus 167 n~~gqlg~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gq--------------------lg~p~~~~~~v~~i~ 225 (282)
T 3qhy_B 167 NYFGQTTVPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQ--------------------TTVPTEALSGVSAIA 225 (282)
T ss_dssp CTTSTTSCCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTST--------------------TCCCGGGGSSCCEEE
T ss_pred CCCCCCCCceecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCC--------------------CCCCcccCCCceEEE
Q ss_pred EccCCCEEEEEcCCCeE-EE
Q 001202 460 ASKDGMFLAVAGLHGLI-LY 478 (1124)
Q Consensus 460 ~SpdG~~lAvag~dG~v-lw 478 (1124)
...+...+.+ ||.+ .|
T Consensus 226 ~G~~h~~al~---~g~v~~w 242 (282)
T 3qhy_B 226 SGEWYSLALK---NGKVIAW 242 (282)
T ss_dssp ECSSCEEEEE---TTEEEEE
T ss_pred cCCCEEEEEE---CCEEEEe
No 339
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=28.56 E-value=6.2e+02 Score=27.79 Aligned_cols=269 Identities=13% Similarity=0.020 Sum_probs=125.2
Q ss_pred eEEEEeeCCeEE-EEEcCCcEEEEecCCCceeE--------EEEeeChHHHhhhcceeEEEEecCCcEEEEEeCCCeEEE
Q 001202 23 QIIYFKVNNGLL-LIASPCHIELWSSSQHKVRL--------GKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHI 93 (1124)
Q Consensus 23 ~iv~fS~dg~ll-A~~~~~~l~IW~~~~~~~~l--------~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i 93 (1124)
.++.++...... |...++.|..|-.+. .-++ ....+. ..+. .-.+..+..+--+...+..+.+|.|..
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~-~GqLG~g~~~~~~~p~~v-~~~~-~~~~~~v~i~~G~~h~~al~~~G~v~~ 130 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGA-GGRLGIGGTESVSTPTLL-ESIQ-HVFIKKVAVNSGGKHCLALSSEGEVYS 130 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCG-GGTTSSSSSCCEEEEEEC-GGGT-TSCEEEEEECTTCSEEEEEETTSCEEE
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCC-CCCCCCCCcCCccCCEEc-cccc-CCceeEEEECcCCCeEEEEcCCCCEEE
Confidence 455555555544 445567899997652 1111 111111 1111 112234566666667777788999988
Q ss_pred EEeeecCceeecCCCCCCCcceeeEEEEeeeeeecccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeeccCC
Q 001202 94 FKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSS 173 (1124)
Q Consensus 94 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~Wd~~~~~~~~l~~~~ 173 (1124)
|--..... .+ +... .....+.....+ ....|..|++...+.++-+.+|.++.|=++ ..++....
T Consensus 131 wG~n~~Gq---LG-~g~~-----~~~~~p~~v~~l--~~~~i~~va~G~~hs~alt~~G~v~~wG~n--~~GqLG~~--- 194 (389)
T 3kci_A 131 WGEAEDGK---LG-HGNR-----SPCDRPRVIESL--RGIEVVDVAAGGAHSACVTAAGDLYTWGKG--RYGRLGHS--- 194 (389)
T ss_dssp EECCGGGT---TC-SSSC-----CCEEEEEECGGG--TTSCEEEEEECSSEEEEEETTSCEEEEECC--GGGTTCSS---
T ss_pred EeCCCCCc---CC-CCCC-----ccCcCCeEeccc--CCCeEEEEEeCcCeEEEEeCCCeEEEeCCC--CCCCcCCC---
Confidence 86543211 11 0000 000111111111 123678888888888888899998764332 22221000
Q ss_pred CCccccccccccCCCCcccccCCCCeeecccCCCCceEEEEEecCCcceEEEEecCCcEEEEEecCCce-Ee---eeccc
Q 001202 174 NDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL-KL---AEFIK 249 (1124)
Q Consensus 174 ~~~~~i~~i~fs~~~ql~s~~~~~~~~~~~~~~~~~~I~~i~~s~~~~~~~~~s~dG~~~~~~~~d~~i-~~---wd~~~ 249 (1124)
. ......| .. ........|.+++........+++..||+++..+.++... -. -+...
T Consensus 195 ~--~~~~~~p----------------~~-v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~ 255 (389)
T 3kci_A 195 D--SEDQLKP----------------KL-VEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKV 255 (389)
T ss_dssp S--CCCEEEE----------------EE-CGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEE
T ss_pred C--Ccccccc----------------eE-ecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccc
Confidence 0 0000000 00 0011234566666544335678889999999988653210 00 00001
Q ss_pred cceecCC--CCeEEEEEccCCCEEEEEecCCeEEEEEcCCCCce-------eEEE-eeccCCCCCCCCCCeEEEEECCCC
Q 001202 250 IDKELGS--GDAVCASIAPEQQILAVGTRRGVVELYDLAESASL-------IRTV-SLYDWGYSMDDTGPVSCIAWTPDN 319 (1124)
Q Consensus 250 ~~~~~gh--~~~v~va~spdg~lLAsGs~DgtV~vwd~~~~~~~-------~~~l-~~~~~g~~~~h~g~V~~lawSPDG 319 (1124)
+...... ...+.++..... .+.-..||.|..|-....+++ .... .+... ....|..|+-. .
T Consensus 256 p~~v~~~~~~~v~~v~~G~~h--s~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l-----~~~~v~~ia~G--~ 326 (389)
T 3kci_A 256 PMKIDSLTGLGVVKVECGSQF--SVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-----QGKKVIAIATG--S 326 (389)
T ss_dssp EEECGGGTTSCEEEEEEETTE--EEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGG-----TTCCEEEEEEC--S
T ss_pred cEEecccCCCcEEEEeCCCCE--EEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccC-----CCCCEEEEEec--c
Confidence 1111111 112244443333 223357899999986542211 1111 11100 12346666543 3
Q ss_pred CEEEEEECCCcEEEEEcCC
Q 001202 320 SAFAVGWKSRGLTVWSVSG 338 (1124)
Q Consensus 320 ~~Lasgs~Dg~I~vWdv~~ 338 (1124)
...+.-..||.|..|-...
T Consensus 327 ~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 327 LHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp SEEEEEETTCCEEEEECCT
T ss_pred CeEEEECCCCCEEEeeCCC
Confidence 3444457788999997643
No 340
>2ao6_B NCOA-2, 14-MER fragment of nuclear receptor coactivator 2; , human androgen receptor ligand binding domain; HET: R18; 1.89A {Homo sapiens}
Probab=27.96 E-value=37 Score=21.51 Aligned_cols=19 Identities=47% Similarity=0.641 Sum_probs=16.3
Q ss_pred HHHHHHHHhcccHHHHHHH
Q 001202 762 HCLLRHLLQRDKIEEALRL 780 (1124)
Q Consensus 762 ~~il~~ll~~~~~~~a~~~ 780 (1124)
|++||.||-++++..|+..
T Consensus 3 ~~LLRyLLDkDdgnaalry 21 (26)
T 2ao6_B 3 NALLRYLLDKDDGNAALRY 21 (26)
T ss_pred cHHHHHHHccccchHHHHH
Confidence 6789999999999888854
No 341
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=27.81 E-value=6.4e+02 Score=27.72 Aligned_cols=117 Identities=9% Similarity=0.011 Sum_probs=71.9
Q ss_pred EEEEecCCcEEEEEecCCceEeeeccccceecCC---CCeEEEEE-ccCCCEEEEEecCCeEEEEEcCCCCceeEEEeec
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGS---GDAVCASI-APEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh---~~~v~va~-spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~ 298 (1124)
.+..+|..++++... ..++++.|..+.+++..| .+.+-=.| |++ .||.-+ +..|.-|++.....+.+.+..+
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~--~L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSS--EEEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCC--eEEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 344467788777766 677899998877665332 33333333 333 344433 4589999998645555555532
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEEC-------CCcEEEEEcCCCeeeEEeccC
Q 001202 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWK-------SRGLTVWSVSGCRLMSTIRQI 348 (1124)
Q Consensus 299 ~~g~~~~h~g~V~~lawSPDG~~Lasgs~-------Dg~I~vWdv~~~~l~~tl~~h 348 (1124)
..= ....|..-+-++|.+.++..+- .|.+.+|++..+. -+.++||
T Consensus 147 ~~L----~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGh 198 (365)
T 2xzh_A 147 SSL----AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGH 198 (365)
T ss_dssp GGG----TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCS
T ss_pred hhc----ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeee
Confidence 110 1234666677888886665432 3678899987653 5677777
No 342
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=27.69 E-value=1.4e+02 Score=32.98 Aligned_cols=116 Identities=9% Similarity=0.047 Sum_probs=64.1
Q ss_pred eEEEEecCCcEEEEEecCCceEeeeccccceecCCCCeEEEE---EccCCCEEEEE-ecCCeEEEEEcCCCCceeEEEee
Q 001202 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCAS---IAPEQQILAVG-TRRGVVELYDLAESASLIRTVSL 297 (1124)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v~va---~spdg~lLAsG-s~DgtV~vwd~~~~~~~~~~l~~ 297 (1124)
..++.+.||++.+....++. .+|...... ....+... ...++..++.. +.||.+..++..+ +.....+..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~-~~W~~~~~~----~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~ 85 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGH-IIWSIEPEN----FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-GLQKLPLSI 85 (339)
T ss_dssp EEEEEETTSCEEEEETTTTE-EEEEECGGG----SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT-EEEEEEEEH
T ss_pred EEEEEeCCCeEEEEECCCCc-EEEEecCCc----cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC-CcEEeeecc
Confidence 45667789998888766654 457654430 00111110 00123344443 5788888888766 433322222
Q ss_pred ccCCCCCCCCCCeEE----EEE----CCCCCEEEEEECCCcEEEEEcCCCeeeEEecc
Q 001202 298 YDWGYSMDDTGPVSC----IAW----TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1124)
Q Consensus 298 ~~~g~~~~h~g~V~~----law----SPDG~~Lasgs~Dg~I~vWdv~~~~l~~tl~~ 347 (1124)
...- ...++.. +.. +-++..+.+|+.+|.+..-|..+|+.+.++..
T Consensus 86 ~~lv----~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 86 RQLV----STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HHHH----TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccce----eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1110 1222221 000 01455788999999999999999999888864
No 343
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=25.48 E-value=6.4e+02 Score=26.94 Aligned_cols=110 Identities=10% Similarity=0.049 Sum_probs=59.1
Q ss_pred ceEEEEecCCcEEEEEecCCceEeeeccccceecCCCCeE-EEEEccCCCEEEEEecCCeEEEEEcCCC---Cc---eeE
Q 001202 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES---AS---LIR 293 (1124)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~---~~---~~~ 293 (1124)
..++.++.+|...-+...+....--.+...-.+.. .+.+ .+........++..+.+|.+..+.+++- ++ -.+
T Consensus 115 ~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~ 193 (312)
T 1suu_A 115 AYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVC 193 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEE
T ss_pred CEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeE
Confidence 34566677776666554332111000000001122 3444 5544444567888899999999987651 11 111
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCEEEEEECCCcEEEEEcCC
Q 001202 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (1124)
Q Consensus 294 ~l~~~~~g~~~~h~g~V~~lawSPDG~~Lasgs~Dg~I~vWdv~~ 338 (1124)
.+.+ .....|..+..-+++..+++.+.+|..+..++..
T Consensus 194 ~i~L-------~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 194 GMKL-------KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CCCC-------CTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred eEEe-------CCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 1111 1234566665555666788888888888887753
No 344
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.35 E-value=8.5e+02 Score=27.93 Aligned_cols=117 Identities=9% Similarity=0.038 Sum_probs=72.2
Q ss_pred EEEEecCCcEEEEEecCCceEeeeccccceecCC---CCeE-EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeec
Q 001202 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGS---GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1124)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~wd~~~~~~~~gh---~~~v-~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~ 298 (1124)
.+..+|..++++... ..++++.|..+.+++..| .+.+ --.+|++ .|+.-+ +..|.-|++.....+.+.+..+
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT--EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC--eEEEEc-CCeeEEecccCCCCchhheecc
Confidence 344557778777765 678899998876665332 3333 3344444 344432 5689999997644555555532
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEE-------CCCcEEEEEcCCCeeeEEeccC
Q 001202 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGW-------KSRGLTVWSVSGCRLMSTIRQI 348 (1124)
Q Consensus 299 ~~g~~~~h~g~V~~lawSPDG~~Lasgs-------~Dg~I~vWdv~~~~l~~tl~~h 348 (1124)
..= ....|..-.-++|++.++..+ -.|.+.+|++..+ .-+.++||
T Consensus 146 ~~L----~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh 197 (494)
T 1bpo_A 146 SSL----AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 197 (494)
T ss_dssp GGG----TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCS
T ss_pred hhc----ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheee
Confidence 110 124466667788888776443 2367888998765 35677777
No 345
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=23.29 E-value=6.3e+02 Score=28.84 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=35.3
Q ss_pred CCeEEEEEccCCC-EEEEEecCCeEEEEEcCCCC--ceeEEEee-ccCCCCCCCCCCeEEEEECCC
Q 001202 257 GDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESA--SLIRTVSL-YDWGYSMDDTGPVSCIAWTPD 318 (1124)
Q Consensus 257 ~~~v~va~spdg~-lLAsGs~DgtV~vwd~~~~~--~~~~~l~~-~~~g~~~~h~g~V~~lawSPD 318 (1124)
..+..++|.|+|+ .|.++.+.|.|++++.+... ..+..+.. ...+......+....|+|+||
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4667899999986 34445688999998754211 11111110 000100112467889999997
No 346
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=21.30 E-value=1.6e+03 Score=29.96 Aligned_cols=64 Identities=19% Similarity=0.437 Sum_probs=43.9
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCCCceeEEEeeccCCCCCCCCCCeEEEEECCCCC-EEEEEECCCcEEEEEcCC
Q 001202 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSG 338 (1124)
Q Consensus 261 ~va~spdg~lLAsGs~DgtV~vwd~~~~~~~~~~l~~~~~g~~~~h~g~V~~lawSPDG~-~Lasgs~Dg~I~vWdv~~ 338 (1124)
++-.||..+.||.-. ..++.|||+++ ...++... -..+|.-=+|-.+.. .|+| +..|.-|++.+
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnl~~-k~klks~~---------~~e~VvfWkWis~~~l~lVT---~~aVyHW~~~~ 134 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHT---------MTDDVTFWKWISLNTVALVT---DNAVYHWSMEG 134 (1630)
T ss_pred hhccCCCcceEEEec-CCeEEEeehHH-hhhhcccc---------cCCCceEEEecCCCeeEEEc---CCeEEEeccCC
Confidence 566789999888875 77999999987 43333333 245677778854433 3444 25899999976
Done!