Query 001203
Match_columns 1124
No_of_seqs 411 out of 2108
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 18:37:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1932 TATA binding protein a 100.0 5E-156 1E-160 1392.7 65.4 910 1-976 3-992 (1180)
2 PRK14015 pepN aminopeptidase N 100.0 1.1E-68 2.4E-73 670.6 74.1 741 14-949 14-791 (875)
3 TIGR02414 pepN_proteo aminopep 100.0 3E-67 6.4E-72 655.9 70.4 542 16-682 4-566 (863)
4 TIGR02412 pepN_strep_liv amino 100.0 2.2E-64 4.8E-69 638.0 55.4 433 17-522 12-455 (831)
5 KOG1046 Puromycin-sensitive am 100.0 3.4E-64 7.4E-69 635.6 54.6 585 13-719 29-633 (882)
6 TIGR02411 leuko_A4_hydro leuko 100.0 9.1E-62 2E-66 592.1 44.0 436 14-519 5-453 (601)
7 COG0308 PepN Aminopeptidase N 100.0 3.9E-58 8.4E-63 580.8 53.6 525 24-682 25-572 (859)
8 PF01433 Peptidase_M1: Peptida 100.0 7.7E-54 1.7E-58 502.7 35.8 379 15-442 2-390 (390)
9 KOG1047 Bifunctional leukotrie 100.0 1.4E-47 3E-52 434.6 32.9 441 1-517 1-460 (613)
10 COG3975 Predicted protease wit 98.7 1.8E-06 3.9E-11 100.7 23.9 223 277-516 182-434 (558)
11 PF13485 Peptidase_MA_2: Pepti 98.7 4E-08 8.6E-13 96.3 8.6 102 346-465 26-128 (128)
12 PRK09687 putative lyase; Provi 96.5 0.052 1.1E-06 61.5 15.1 63 658-722 56-122 (280)
13 PRK09687 putative lyase; Provi 96.0 0.32 7E-06 55.1 18.1 58 659-721 27-84 (280)
14 PF13646 HEAT_2: HEAT repeats; 95.1 0.084 1.8E-06 48.2 7.8 71 659-737 3-73 (88)
15 PF10460 Peptidase_M30: Peptid 94.5 1.2 2.6E-05 51.9 16.7 138 346-509 140-285 (366)
16 PRK13800 putative oxidoreducta 93.8 2.5 5.5E-05 55.8 19.8 106 654-791 619-724 (897)
17 PF05299 Peptidase_M61: M61 gl 92.2 0.068 1.5E-06 52.6 1.5 42 347-388 6-58 (122)
18 PRK13800 putative oxidoreducta 91.9 2.2 4.7E-05 56.4 15.3 185 659-897 688-888 (897)
19 PF04450 BSP: Peptidase of pla 91.4 3.4 7.3E-05 44.7 13.4 171 281-504 26-204 (205)
20 PF07607 DUF1570: Protein of u 90.8 0.14 3.1E-06 50.8 2.2 38 347-385 3-43 (128)
21 COG1413 FOG: HEAT repeat [Ener 88.3 22 0.00048 41.0 18.2 94 657-776 45-138 (335)
22 PF01602 Adaptin_N: Adaptin N 84.8 18 0.00038 44.5 15.7 217 657-899 115-360 (526)
23 PF01602 Adaptin_N: Adaptin N 84.4 9.1 0.0002 47.0 12.9 188 659-875 83-298 (526)
24 KOG1824 TATA-binding protein-i 81.8 58 0.0013 42.2 17.8 136 700-871 341-505 (1233)
25 TIGR02270 conserved hypothetic 81.1 48 0.001 39.8 16.7 187 657-891 56-251 (410)
26 PF03272 Enhancin: Viral enhan 80.4 62 0.0013 42.1 18.2 124 252-385 134-276 (775)
27 PF13646 HEAT_2: HEAT repeats; 80.3 4.2 9.2E-05 36.8 6.0 55 658-716 34-88 (88)
28 PTZ00429 beta-adaptin; Provisi 77.0 2E+02 0.0044 37.4 21.3 59 659-719 105-168 (746)
29 smart00567 EZ_HEAT E-Z type HE 75.7 2.5 5.5E-05 30.6 2.4 27 705-735 1-27 (30)
30 PF03130 HEAT_PBS: PBS lyase H 75.6 3.4 7.3E-05 29.5 3.0 26 707-736 1-26 (27)
31 KOG0567 HEAT repeat-containing 65.1 86 0.0019 35.2 12.2 71 659-735 39-109 (289)
32 PF13513 HEAT_EZ: HEAT-like re 63.9 18 0.0004 29.8 5.5 44 673-718 4-55 (55)
33 PF02985 HEAT: HEAT repeat; I 63.5 9.1 0.0002 28.1 3.2 26 692-719 3-28 (31)
34 KOG0567 HEAT repeat-containing 63.4 12 0.00026 41.6 5.3 84 669-776 200-283 (289)
35 PF10026 DUF2268: Predicted Zn 60.3 29 0.00063 37.2 7.7 41 345-385 65-109 (195)
36 PF05918 API5: Apoptosis inhib 59.4 1.8E+02 0.0038 36.4 14.9 46 678-725 48-93 (556)
37 KOG1932 TATA binding protein a 59.2 4.4 9.6E-05 52.5 1.3 101 432-538 443-554 (1180)
38 KOG2259 Uncharacterized conser 57.6 3.2E+02 0.007 34.5 16.2 57 662-720 204-263 (823)
39 smart00638 LPD_N Lipoprotein N 57.0 1.1E+02 0.0024 38.2 13.3 88 799-897 478-565 (574)
40 PF10023 DUF2265: Predicted am 55.3 16 0.00035 42.2 4.9 39 344-388 164-202 (337)
41 PTZ00429 beta-adaptin; Provisi 50.9 3E+02 0.0065 35.8 15.6 206 667-899 308-537 (746)
42 KOG2171 Karyopherin (importin) 50.1 5.7E+02 0.012 34.4 17.7 65 655-721 347-419 (1075)
43 PF01347 Vitellogenin_N: Lipop 49.2 36 0.00078 43.0 7.2 88 799-897 522-609 (618)
44 KOG1240 Protein kinase contain 48.2 1.2E+02 0.0025 40.7 11.0 165 760-952 460-641 (1431)
45 COG4324 Predicted aminopeptida 48.2 18 0.00038 39.9 3.5 37 346-388 198-234 (376)
46 PF11940 DUF3458: Domain of un 43.2 6.4E+02 0.014 30.0 19.6 39 644-682 74-112 (367)
47 PF11864 DUF3384: Domain of un 41.7 7.4E+02 0.016 30.3 20.0 172 778-961 150-335 (464)
48 KOG4535 HEAT and armadillo rep 41.1 13 0.00027 44.4 1.2 73 690-770 574-650 (728)
49 PF12315 DUF3633: Protein of u 39.7 48 0.001 35.7 5.1 41 346-388 94-134 (212)
50 COG1413 FOG: HEAT repeat [Ener 39.5 1.3E+02 0.0029 34.5 9.4 72 649-722 99-180 (335)
51 smart00731 SprT SprT homologue 38.7 35 0.00075 34.8 3.9 15 345-359 59-73 (146)
52 KOG2025 Chromosome condensatio 37.5 94 0.002 39.2 7.7 139 707-870 142-291 (892)
53 KOG2021 Nuclear mRNA export fa 36.6 1.1E+03 0.023 30.7 17.2 55 820-879 209-264 (980)
54 KOG1061 Vesicle coat complex A 36.2 7.1E+02 0.015 32.1 15.0 117 812-933 321-448 (734)
55 PF13699 DUF4157: Domain of un 36.1 63 0.0014 29.5 4.7 67 288-357 6-73 (79)
56 PF01863 DUF45: Protein of unk 35.2 87 0.0019 33.4 6.5 67 279-360 108-179 (205)
57 KOG1062 Vesicle coat complex A 34.1 1.2E+03 0.026 30.5 17.7 259 668-961 119-418 (866)
58 PF04826 Arm_2: Armadillo-like 32.1 5.6E+02 0.012 28.7 12.4 135 657-797 14-169 (254)
59 KOG2171 Karyopherin (importin) 31.8 6.8E+02 0.015 33.7 14.3 233 658-899 120-407 (1075)
60 PF12719 Cnd3: Nuclear condens 31.1 3.2E+02 0.007 31.1 10.6 124 819-954 42-182 (298)
61 PRK04860 hypothetical protein; 29.9 96 0.0021 32.3 5.4 67 282-357 6-75 (160)
62 KOG2259 Uncharacterized conser 29.6 1.2E+02 0.0026 38.0 6.9 46 690-737 374-421 (823)
63 PF13251 DUF4042: Domain of un 28.7 2.8E+02 0.006 29.6 8.7 107 706-832 1-130 (182)
64 PF10508 Proteasom_PSMB: Prote 27.7 8.7E+02 0.019 30.0 14.2 216 689-956 77-318 (503)
65 KOG1062 Vesicle coat complex A 25.4 1.6E+03 0.035 29.3 15.9 119 664-791 150-277 (866)
66 PF10263 SprT-like: SprT-like 24.3 1.8E+02 0.0038 29.6 6.2 18 344-361 59-76 (157)
67 PF12755 Vac14_Fab1_bd: Vacuol 24.0 1.2E+02 0.0027 28.7 4.6 40 857-898 40-85 (97)
68 KOG1823 DRIM (Down-regulated i 22.6 5.2E+02 0.011 35.5 11.2 141 781-933 780-936 (1364)
69 KOG0946 ER-Golgi vesicle-tethe 22.5 8E+02 0.017 31.9 12.0 119 642-791 107-241 (970)
70 PF09292 Neil1-DNA_bind: Endon 21.6 5.3 0.00011 30.7 -4.0 26 752-778 2-27 (39)
71 PF01435 Peptidase_M48: Peptid 21.3 1.1E+02 0.0023 32.9 4.1 20 345-364 89-108 (226)
No 1
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=4.8e-156 Score=1392.73 Aligned_cols=910 Identities=36% Similarity=0.586 Sum_probs=747.9
Q ss_pred CCCCCCCCCCC----CCCCCCCeEEEEEEEEEE-EECCCcEEEEEEEEEEEe--CCccEEEEEcCCceeEEEEEcCeeee
Q 001203 1 MAKPRKPKNEE----TKVENSGAVVRHQKLCLS-IDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTE 73 (1124)
Q Consensus 1 ~~~~r~~~~~~----p~~~~~~~~~~Hy~l~L~-id~~~~~~~G~v~Iti~~--~~l~~I~L~a~~L~I~~V~Vng~~~~ 73 (1124)
|+|.|++++.. ...++++..++||+|+|+ |||++++|.|+|||+|.+ +++..|.|||++|+|.+|.|||.++.
T Consensus 3 ~~~~~ppr~~~~~g~~~~e~~~~~~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~ 82 (1180)
T KOG1932|consen 3 MAKARPPRPEEAPGAKTSENPGRPVLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTK 82 (1180)
T ss_pred cccCCCCCCccCCCcccccCCCCcceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccc
Confidence 56777776533 346677788999999998 999999999999999984 68999999999999999999999999
Q ss_pred eeecCCCcccchhhhhhcccccCCChhhhHHHHHHHHhhhcCCcCcEEEEcCCCCCCccccccceeeeEEEeeecccccc
Q 001203 74 FEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN 153 (1124)
Q Consensus 74 f~~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~ 153 (1124)
|.|.++ .+....+..|.... .+...++...-.|... .++.|+|.|.++++... .+.+ ..
T Consensus 83 f~y~d~-~q~~~~~~~~~~~l-~~~s~~~~~~~~y~~l--~~~~g~L~I~ipk~~~~--~~ee---------------~~ 141 (1180)
T KOG1932|consen 83 FIYNDP-TQNDCTDEIWQRVL-DPASQSHFLAVQYEDL--DEDNGELLIKIPKESKK--VGEE---------------LK 141 (1180)
T ss_pred eeecch-hhhhhhhhhhhhhh-hhhhhhhhHHHhhhcc--ccCCCeEEEEcCchhhh--hhhh---------------cc
Confidence 999987 45433333333211 1111122222233322 22468999987643211 1111 01
Q ss_pred ceeEEEEEEEecccccceeecc---------eEEecccc--CCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCccce
Q 001203 154 VKLVRIDYWVEKVEVGIHFDGN---------ALHTDNQI--RRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLY 222 (1124)
Q Consensus 154 ~~~v~i~y~~~~p~~Gi~F~~~---------~~~T~~ep--~~AR~wFPC~D~P~~Katf~L~ItvP~~~~avSnG~L~~ 222 (1124)
...++|+|.+++|..|++|+.. +++|.+.+ .+||+||||+|+++++|||+|++|+|++++++++|++.+
T Consensus 142 ~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~ 221 (1180)
T KOG1932|consen 142 ALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLE 221 (1180)
T ss_pred ceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccceEEeecCCccccceEEEEEEecccceeccchhhhh
Confidence 2347799999999999999754 45665544 368999999999999999999999999999999999999
Q ss_pred eeeecCCCCCeEEEEEccCCcchHhHHhhccCceEeecCCCCceEEEecCChhhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001203 223 QVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPF 302 (1124)
Q Consensus 223 ~~~~~~~~~~kt~~F~~t~P~s~yliafaVG~F~~~~~~~~~~v~~y~~P~~~~~~~~tl~~~~~al~ffee~fG~~YPf 302 (1124)
++.++ |.+++|++|+.+.|++|.+||||||+|+++.++.+.++++||+|+.++.+++++-.+.++++|||++||..|||
T Consensus 222 ~v~~~-D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF 300 (1180)
T KOG1932|consen 222 QVETP-DLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVEPSMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPF 300 (1180)
T ss_pred eeecc-cccccEEEEEEeccCCccccceeeccccccCCCccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCc
Confidence 99876 88999999999999999999999999999988889999999999999999999999999999999999988999
Q ss_pred CCccEEEeCCCcccccccccceeeeeccccccCccccchhhhhHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHH
Q 001203 303 GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTD 382 (1124)
Q Consensus 303 ~ky~~VfVp~~~~~~~~~~gagLii~s~~lL~~~~~id~~~~~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~ 382 (1124)
+.|++||||+.+. .....++|.|+++++||+.++||+.+.++..+|.+||.||||++|||..|+|.||.+|+|+||.+
T Consensus 301 ~~~k~VFvd~~~~--~i~~~asl~I~st~lLy~~~iIDq~~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~ 378 (1180)
T KOG1932|consen 301 SCYKTVFVDEAAV--EISSYASLSIFSTSLLYSKNIIDQTFLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTG 378 (1180)
T ss_pred ceeeEEEecCCcc--eeeecceeeeeeccccchHhhhhHHHHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHH
Confidence 9999999996442 23445689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCChHHHHHHHHHhhhhhhccc-CCCccccC--CCCcccCCCCcccccccchhhhhHHHHHHHHHHHh----Ch
Q 001203 383 SFIKKFLGNNEARYRRYKANCAVCKADD-SGATALSS--SASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQM----GS 455 (1124)
Q Consensus 383 l~~~~~~G~ne~ry~~~~~~~~~~~~d~-~~~~~L~s--~~s~~~l~~~~~~~~f~~i~Y~Kg~lVL~MLe~~l----G~ 455 (1124)
+|+++++|+|||||+.++.+++++..|. .++..+.. .++.. | -.|+++.+|.+.+++ |.
T Consensus 379 l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~Pi~~s~k----------~----~~~~~~~lh~~~r~~~~~s~~ 444 (1180)
T KOG1932|consen 379 LFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTRPISPSMK----------F----KLKGPFHLHISIRHLHTLSGS 444 (1180)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeeccCCCcchh----------h----cccCcceeeecccceeecChh
Confidence 9999999999999999999999998877 44444431 12222 0 234444444444433 12
Q ss_pred HHHHHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHhcCCCCcCHHHHHHHHHcCCCcceEEEEEEEeccccEEEEEEEee
Q 001203 456 NFFRKILQNIISRAQGAS-PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRD 534 (1124)
Q Consensus 456 e~F~~~L~~yl~~~~~~~-~~~~lst~~F~~l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~ 534 (1124)
=.....+++++...+.++ .+...+.+.|.++++.++. ..++.||++|+++.|+|.+.+.+.||++++.|++.+.|+
T Consensus 445 ~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~---~~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~i~Q~ 521 (1180)
T KOG1932|consen 445 YGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASK---MLLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMGIDQW 521 (1180)
T ss_pred HHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhh---hHHHHHHHHHHhccCCeeEEEEEEEeeccccccHHHHHH
Confidence 223334444444443333 1122344555555555442 125899999999999999999999999999999999997
Q ss_pred ccCCCCCCCCccC------CCCCCC----CCCCCCCcceeEEEEEEccCCccccccccCCCCceEEEeeeccchhhHhhh
Q 001203 535 CTVKPDSRTPVLS------SNTDSE----NRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRA 604 (1124)
Q Consensus 535 ~~~~~~~~~~~~~------~~~~~~----~~~~~~~~~gpmtIri~E~DGt~eh~v~~i~~~~~~~~ei~~~sKy~~~R~ 604 (1124)
++.......++.+ ...+.+ ...+...|+|||||||||.||||+|++ +|. +.|++.||||||| +|+
T Consensus 522 v~~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g~~~~~GpmtIrv~ElDGtfeH~l-qi~-~~~~k~dI~chsK---~R~ 596 (1180)
T KOG1932|consen 522 VRTGGHAPFSVFSDFNRKRNALEHEIKQDYTAGNEKYTGPMTIRVQELDGTFEHTL-QID-GDFTKLDIQCHSK---SRR 596 (1180)
T ss_pred hhhccccceeeecccchhhhhhhhhccccccCCCceeccceEEEEEeecCcceeeE-Eec-Ccccccceeeccc---ccc
Confidence 6554332222111 011111 112225699999999999999999986 454 5599999999999 466
Q ss_pred cCCCCCCCCCCCCCCCCccccccccccCCCCceEEEEcCCCcEEEEEccCCCHHHHHHHHhhCCCcHHHHHHHHHHHhCC
Q 001203 605 LKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALP 684 (1124)
Q Consensus 605 ~k~kk~~~~~~~~~~~d~~~~~d~~~~~~~p~~WIRiDpd~ewl~~v~~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~~~ 684 (1124)
+|+||.++.+|+|+++| ++.||. ++|++|||+|||+||||+|+++||||||++||++||||+||+|||++|++.|
T Consensus 597 ~kkKk~~l~sgEE~e~d-l~~~d~----~spllWIRiDpd~e~i~~i~i~QPd~Mw~~QLr~drDVvAQ~EAI~~le~~p 671 (1180)
T KOG1932|consen 597 QKKKKVPLMSGEEIEMD-LTNMDE----ESPLLWIRIDPDMEWIREIHIEQPDFMWVYQLRQDRDVVAQMEAIESLEALP 671 (1180)
T ss_pred cCCcCCCCCChhhhccc-ccccCc----cCceeEEEeCcchhhhhhhhccCchHHHHHHHHhcccHHHHHHHHHHHHcCC
Confidence 88899999999999988 777764 8999999999999999999999999999999999999999999999999998
Q ss_pred CCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHH
Q 001203 685 HLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAI 764 (1124)
Q Consensus 685 ~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkai 764 (1124)
++. .++||+|||.|+|||||||++||+|||++++++.+|.|++||+++|++.||+.+++|||||||+|||+|||||+|
T Consensus 672 ~~~--s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Yfvq~~i 749 (1180)
T KOG1932|consen 672 STA--SRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEYFVQCAI 749 (1180)
T ss_pred cch--hHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCCCCCcCccccHHHHHHHHhh
Confidence 654 679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCChHHHHHHHHHHhh---------c---------------------h-------------HHHHHHHH
Q 001203 765 PHAVAMVRAADNKSPREAVEFVLQLLK---------S---------------------I-------------LFLSSLLK 801 (1124)
Q Consensus 765 p~ala~vr~~~g~~p~~v~~fLldll~---------~---------------------~-------------~~~~~~~~ 801 (1124)
|.|||.+|+.+|+||.+|++||||||| | . .+...++.
T Consensus 750 P~a~a~lR~~~g~cp~~V~~FlLdLlkyNDNs~N~YSD~~y~a~LIesl~~~l~p~~s~~~~~~k~~~~~l~~~~~~~~~ 829 (1180)
T KOG1932|consen 750 PVAFASLRGREGKCPKEVKAFLLDLLKYNDNSFNSYSDDYYRASLIESLVESLFPMVSLEFYAEKHTDRLLSRDVRVLID 829 (1180)
T ss_pred HHHHHHhccccCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHhhhcccccchhhhhhhhcchhhhhHHHHHHH
Confidence 999999999999999999999999999 0 0 11234799
Q ss_pred HHHHHHcccccCCCCCchhhHHHHHHHHHHHHHhcCCCchhhhhhhcccccCcCChHHHHHHHHHHhhccccccCChhHH
Q 001203 802 RIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSA 881 (1124)
Q Consensus 802 ei~r~l~~D~~~pSy~~~vt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vR~~A~~~l~~~~~~~~~~~~~ 881 (1124)
||+|+|+||+++|||.++|+++||+++.+++ ..|++|.++ ..+..|+.++++.++|++|++++++++.. +|....
T Consensus 830 ei~r~L~~e~l~pS~k~ii~~~~l~~~~~l~--k~~hl~s~p--~~~~~~a~~~~~vd~r~~a~~~~v~~~~~-~~~~~~ 904 (1180)
T KOG1932|consen 830 EITRLLNMEKLMPSFKHIIKVSALKAIRELQ--KSGHLPSLP--ELLESYAEEGSFVDVRICAEELNVDLGGV-DGSPDD 904 (1180)
T ss_pred HHHHHHHHHhhchhhhceEEeeechhhhhhh--hccccccCc--hhhhccccccchhhhHHHhhhhhhhhccc-CCChHH
Confidence 9999999999999999999999999999985 489999987 56789999999999999999999999864 555689
Q ss_pred HHHHHHHhccCCcchhhhhHHHHHhh-hhhhccCCCCCCCCChHHHHHHHHHHhccccccchhhhhhHHHHHHHhhcCCc
Q 001203 882 LSLFIKSVEEEPSLRGQVKLGIHAMR-ICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRAP 960 (1124)
Q Consensus 882 l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~lr~~~~~~~~~l~~~~~ 960 (1124)
|.++++.++.||++..|+++...+.. ..++.+++ +.+.++.+.+++++|.+++.+...|..+||.+.++ |+
T Consensus 905 l~~~leil~~~~dp~~R~~i~~ml~~~~np~~~~~-~~s~~~~~~~~~~~~~~~~~~k~~D~~~r~~v~d~-------~~ 976 (1180)
T KOG1932|consen 905 LAYILEILENDPDPVIRHKILDMLSQSNNPVTKGG-TESDLLKEALVERLWKLKNLSKEPDICSRSSVLDV-------YI 976 (1180)
T ss_pred HHHHhhhcccCcchHHHHHHHHHhhccCCceeecc-ccCccccHHHHHhhhhhhccCCCCCeEeEeehhhh-------hh
Confidence 99999999999888888876666665 66776665 56799999999999999999999999999998888 99
Q ss_pred cccCCCCCcccccCCC
Q 001203 961 TLYGVPRDKLLLLGDG 976 (1124)
Q Consensus 961 ~l~g~~~~~~~~~~~~ 976 (1124)
.|||..++.++..+..
T Consensus 977 ~L~~~~~~~~~~a~E~ 992 (1180)
T KOG1932|consen 977 ALFGLGRPNILGAPEI 992 (1180)
T ss_pred heeecCCcccccchhh
Confidence 9999999886666554
No 2
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=1.1e-68 Score=670.59 Aligned_cols=741 Identities=16% Similarity=0.196 Sum_probs=494.2
Q ss_pred CCCCCeEEEEEEEEEEEECCCcEEEEEEEEEEEe--CCccEEEEEcCCceeEEEEEcCeee---eeeecCCCcccchhhh
Q 001203 14 VENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPT---EFEYYPHNHQNVENEK 88 (1124)
Q Consensus 14 ~~~~~~~~~Hy~l~L~id~~~~~~~G~v~Iti~~--~~l~~I~L~a~~L~I~~V~Vng~~~---~f~~~~~~~~~~~~~~ 88 (1124)
....+|.+.||+|+|++|++...++|.++|+..+ .+++.|.||+++|+|.+|.+||.++ .|.+.+
T Consensus 14 y~~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~~~~~~~~~~~~---------- 83 (875)
T PRK14015 14 YRPPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQPLAPSAYELDE---------- 83 (875)
T ss_pred cCCCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCEEcCccceEEcC----------
Confidence 3456899999999999999999999999998765 4578999999999999999999876 454432
Q ss_pred hhcccccCCChhhhHHHHHHHHhhhcCCcCcEEEEcCCCCCCccccccceeeeEEEeeeccccccceeEEEEEEEecccc
Q 001203 89 RWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEV 168 (1124)
Q Consensus 89 ~~~~lv~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v~i~y~~~~p~~ 168 (1124)
..|+|.. + +. .++++ +.|.+.|..+. +-.
T Consensus 84 -----------------------------~~L~I~~--l----~~---~~~l~--I~y~~~P~~n~-----------~l~ 112 (875)
T PRK14015 84 -----------------------------EGLTIEN--L----PD---RFTLE--IETEIDPEANT-----------ALE 112 (875)
T ss_pred -----------------------------CEEEEec--C----Cc---cEEEE--EEEEEecCCCC-----------Cce
Confidence 1366641 1 11 13333 44555443211 012
Q ss_pred cceeecceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcC-Cc-EEEecCccceeeeecCCCCCeEEEEEccCCcchH
Q 001203 169 GIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQ-NL-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAK 246 (1124)
Q Consensus 169 Gi~F~~~~~~T~~ep~~AR~wFPC~D~P~~Katf~L~ItvP~-~~-~avSnG~L~~~~~~~~~~~~kt~~F~~t~P~s~y 246 (1124)
|+++...+++|||||++||+||||+|+|+.|+||+++|++|+ .| +++|||.++++.. .++++++++|+.++|||+|
T Consensus 113 Gly~s~~~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~~~~~~lSNG~l~~~~~--~~~g~~~~~w~~~~PmpsY 190 (875)
T PRK14015 113 GLYRSGGMFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKAKYPVLLSNGNLVESGE--LPDGRHWATWEDPFPKPSY 190 (875)
T ss_pred eeEEECCEEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccccCeEEecCCcccccee--ccCCeEEEEEEeCCCcccc
Confidence 333333368999999999999999999999999999999999 58 6899999987642 3567899999999999999
Q ss_pred hHHhhccCceEeecC----C--CCceEEEecCChhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCccccccc
Q 001203 247 WITLAVAPFEVLPDH----H--QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSST 320 (1124)
Q Consensus 247 liafaVG~F~~~~~~----~--~~~v~~y~~P~~~~~~~~tl~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~ 320 (1124)
+++|+||+|+.+++. . +.++++|+.|+..+.+.++++.++++|+|||++||.+|||++|++|++|++..++|++
T Consensus 191 L~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN 270 (875)
T PRK14015 191 LFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSLKKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMEN 270 (875)
T ss_pred eEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhCEEeCCCCCCccccc
Confidence 999999999998753 1 3678999999999999999999999999999999999999999999999765567888
Q ss_pred ccceeeeecc-ccccCcccc-chhh-hhHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHhCChHHHHH
Q 001203 321 FGAAMGIFSS-QILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYR 397 (1124)
Q Consensus 321 ~gagLii~s~-~lL~~~~~i-d~~~-~~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~ry~ 397 (1124)
+ |+++|.+ .+|.+++.. +... ....+|+||+|||||||+||++||+|+|||||||+|++.+|.....+....++.
T Consensus 271 ~--Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~ 348 (875)
T PRK14015 271 K--GLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIE 348 (875)
T ss_pred c--cccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCcceecchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 8 6788854 567666532 2222 234589999999999999999999999999999999998887776553322221
Q ss_pred HHHHhhhhhhcccCCCccccCCCCcccCCC---CcccccccchhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCCC
Q 001203 398 RYKANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASP 474 (1124)
Q Consensus 398 ~~~~~~~~~~~d~~~~~~L~s~~s~~~l~~---~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~ 474 (1124)
........ ....++.+..+++.+ .++...|+.++|.||++|||||+..||++.|+++|+.|++++++++
T Consensus 349 ~~~~l~~~-------~~~~D~~~~a~pi~p~~~~~i~~~f~~~~Y~KGA~vLrMLr~~lGde~F~~gLr~Yl~~~~~~~- 420 (875)
T PRK14015 349 DVRVLRAA-------QFAEDAGPMAHPVRPDSYIEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFERHDGQA- 420 (875)
T ss_pred HHHHHhhh-------cccccccccCCCCCCcchhhHHhcccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC-
Confidence 11111000 111111121222321 2344578899999999999999999999999999999999999885
Q ss_pred CCCCCHHHHHHHHHHhcCCCCcCHHHHHHHHHcCCCcceEEEEEEEeccccEEEEEEEeeccCCCCCCCCccCCCCCCCC
Q 001203 475 VRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSEN 554 (1124)
Q Consensus 475 ~~~lst~~F~~l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~~~~~~~~~~~~~~~~ 554 (1124)
++++||++.+++++ |.|+.+|+ +|++++|+|.++|+.+|+..++.++++++|.+.....
T Consensus 421 ---at~~Df~~ale~as---g~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q~~~~~~~-------------- 479 (875)
T PRK14015 421 ---VTCEDFVAAMEDAS---GRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQSTPPTPG-------------- 479 (875)
T ss_pred ---CCHHHHHHHHHHHh---CCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEEeCCCCCC--------------
Confidence 89999999999987 56899986 9999999999999999987777888999987542110
Q ss_pred CCCCCCcceeEEEEEEccCCccccccccCCCCc-eEEEeeeccchhhHhhhcCCCCCCCCCCCCCCCCccccccccccCC
Q 001203 555 RDGDIGWPGMMSIRVHELDGMYDHPILPMAGDA-WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSME 633 (1124)
Q Consensus 555 ~~~~~~~~gpmtIri~E~DGt~eh~v~~i~~~~-~~~~ei~~~sKy~~~R~~k~kk~~~~~~~~~~~d~~~~~d~~~~~~ 633 (1124)
......|..|++|.+...+|.-.- +...++. -..+++... +. . +.-.+ -.+
T Consensus 480 ~~~~~~~~iPl~i~l~~~~G~~~~--~~~~~~~~~~~l~l~~~--------------------~q--~-f~f~~---~~~ 531 (875)
T PRK14015 480 QPEKQPLHIPVAIGLLDPDGKELP--LQLEGEPVERVLELTEA--------------------EQ--T-FTFEN---VAE 531 (875)
T ss_pred CCCCceEEEEEEEEEEcCCCceee--ccccCCccceEEEEcCC--------------------ee--E-EEEcC---CCC
Confidence 012346899999998887775210 0011110 111222100 00 0 10000 012
Q ss_pred CCceEEEEcCCCcEEEEEccCCCHHHHHHHHhhCCCcHHHHHHHHHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHH
Q 001203 634 SPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAY 713 (1124)
Q Consensus 634 ~p~~WIRiDpd~ewl~~v~~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~ 713 (1124)
.|+ +.+|++|.-..++..++++..+..|+++|.|..+|.||++.|... .|.+.+.+.
T Consensus 532 ~p~--~s~~r~fsapv~~~~~~~~~~l~~l~~~d~d~~~r~~a~q~l~~~---------~~~~~~~~~------------ 588 (875)
T PRK14015 532 RPV--PSLLRGFSAPVKLEYDYSDEDLLFLMAHDSDPFNRWEAGQRLATR---------LLLANVARH------------ 588 (875)
T ss_pred Cce--EEecCCCCCcEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHHH---------HHHHHHHhc------------
Confidence 344 799999999999999999999999999999999999999999752 222222220
Q ss_pred HHHcccccccccccHHHHHHHHHhcCCCCC---------CCCCCCCCCCChHHHHHHH---HHHHHHHHhhccCCCChHH
Q 001203 714 ALANTASEETDWAGLLHLVKFYKSRRFDEN---------IGLPRPNDFRDFSEYFVLE---AIPHAVAMVRAADNKSPRE 781 (1124)
Q Consensus 714 aLa~~~~~~~~~~G~~~L~k~f~~~~~~~~---------~~ipk~NdFsd~~~Yfvqk---aip~ala~vr~~~g~~p~~ 781 (1124)
.+.. .--..++.+|+....++. -.+|-. .|+.+. .=|.+|. .
T Consensus 589 ------~~~~--~~~~~~~~~~~~~l~~~~~~~~~~a~~l~lp~~-------~~l~~~~~~~d~~~i~-----------~ 642 (875)
T PRK14015 589 ------GQPL--SLDEALIDAFRAVLLDESLDPAFAAELLTLPSE-------AELAEQMEVIDPDAIH-----------A 642 (875)
T ss_pred ------CCCC--CCCHHHHHHHHHHhcCCCCCHHHHHHHccCCCH-------HHHHHhccCCCHHHHH-----------H
Confidence 0000 012334555554333221 113321 111111 1111111 2
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHH-HcccccCCCCCchhhHHHHHHHHHHHHHhcCCCch-hhhhhhcccccCcCChHH
Q 001203 782 AVEFVLQLLKSILFLSSLLKRIDRL-LQFDRLMPSYNGILTISCIRTLTQIALKLSGFISL-DQVVKLIKPFRDFNTIWQ 859 (1124)
Q Consensus 782 v~~fLldll~~~~~~~~~~~ei~r~-l~~D~~~pSy~~~vt~~~l~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 859 (1124)
++++|...|- ..+-+++.++ .++.. ..+|..--...+.++|..+++.......- +........|...+ ..-
T Consensus 643 ~r~~~~~~~a-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~~~~~~~~~~~a~-~mt 715 (875)
T PRK14015 643 AREALRRALA-----TALKDELLALYEALQT-DGPYSPDAEAAGRRALRNVCLSYLAAADDEEAAELAEAQFDQAD-NMT 715 (875)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHhccc-CCCCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHhhCC-CHH
Confidence 3333333322 1222233221 22221 13566555556667777776533222221 21112334555443 345
Q ss_pred HHHHHHHHhhccccccCChhHHHHHHHHHhccCCcchhhhhHHHHHhhhhhhccCCCCCCCCChHHHHHHHHHHhccccc
Q 001203 860 VRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAF 939 (1124)
Q Consensus 860 vR~~A~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 939 (1124)
-|++|+.+|+..... ..+.+|.-|.+.-..||-+-.+- +++.. .-+.+..++++..|+.+-++
T Consensus 716 d~~~al~~l~~~~~~--~~~~~l~~f~~~~~~~~lv~~kw----f~~qa-----------~~~~~~~~~~v~~l~~hp~f 778 (875)
T PRK14015 716 DRLAALSALVNADLP--ERDEALADFYDRWKDDPLVMDKW----FALQA-----------TSPAPDTLERVRALMQHPAF 778 (875)
T ss_pred HHHHHHHHHhcCCCh--HHHHHHHHHHHHhCCCchhhHHH----HHHHh-----------CCCCcCHHHHHHHHhcCCCC
Confidence 699999999986432 22578888888888888765543 11110 11234455666677766654
Q ss_pred c--c-hhhhhhHH
Q 001203 940 N--N-VFLRHHLF 949 (1124)
Q Consensus 940 ~--~-~~lr~~~~ 949 (1124)
+ | -++|..+-
T Consensus 779 ~~~npn~~ral~~ 791 (875)
T PRK14015 779 DLKNPNRVRSLIG 791 (875)
T ss_pred CCCCCcHHHHHHH
Confidence 2 2 46664433
No 3
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=3e-67 Score=655.93 Aligned_cols=542 Identities=16% Similarity=0.192 Sum_probs=408.0
Q ss_pred CCCeEEEEEEEEEEEECCCcEEEEEEEEEEEeC-CccEEEEEcCCceeEEEEEcCeeee---eeecCCCcccchhhhhhc
Q 001203 16 NSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-DIGIVGLHAENLGIESVLVDGEPTE---FEYYPHNHQNVENEKRWR 91 (1124)
Q Consensus 16 ~~~~~~~Hy~l~L~id~~~~~~~G~v~Iti~~~-~l~~I~L~a~~L~I~~V~Vng~~~~---f~~~~~~~~~~~~~~~~~ 91 (1124)
.++|.+.||+|+|+++++...++|.++|++.+. +.+.|.||+++|+|.+|.+||..+. |++.+
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~~~~~~~~~~~~------------- 70 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGKPLAAGDYQLDD------------- 70 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCEecCcceEEEcC-------------
Confidence 468999999999999999999999999998753 4568999999999999999997642 32221
Q ss_pred ccccCCChhhhHHHHHHHHhhhcCCcCcEEEEcCCCCCCccccccceeeeEEEeeeccccccceeEEEEEEEecccccce
Q 001203 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIH 171 (1124)
Q Consensus 92 ~lv~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v~i~y~~~~p~~Gi~ 171 (1124)
..|+|.. ++ +.++++ +.|.+.+..+ .+..|++
T Consensus 71 --------------------------~~L~I~~------~~---~~~~l~--i~~~~~p~~n-----------~~l~GlY 102 (863)
T TIGR02414 71 --------------------------ETLTIAS------VP---ESFTLE--IETEIHPEEN-----------TSLEGLY 102 (863)
T ss_pred --------------------------CEEEEee------CC---ccEEEE--EEEEeecccC-----------CCCeEEE
Confidence 1356642 11 123333 3333333221 1123444
Q ss_pred eecceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCC-c-EEEecCccceeeeecCCCCCeEEEEEccCCcchHhHH
Q 001203 172 FDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWIT 249 (1124)
Q Consensus 172 F~~~~~~T~~ep~~AR~wFPC~D~P~~Katf~L~ItvP~~-~-~avSnG~L~~~~~~~~~~~~kt~~F~~t~P~s~ylia 249 (1124)
+.+.+++|||||++||+||||+|+|+.||+|+++|++|++ | +++|||.++++.. .++++++++|+.++|||+|++|
T Consensus 103 ~s~~~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~y~v~lSNg~~~~~~~--~~~g~~~~~f~~t~pmptYLfA 180 (863)
T TIGR02414 103 KSGGNFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKKYPVLLSNGNKIASGE--LPDGRHWAEWEDPFPKPSYLFA 180 (863)
T ss_pred EeCCeEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCcceEEEeCCcccccee--cCCCeEEEEEeCCCCcChhHhe
Confidence 4445789999999999999999999999999999999996 6 6689999876542 3567899999999999999999
Q ss_pred hhccCceEeecCC------CCceEEEecCChhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCcccccccccc
Q 001203 250 LAVAPFEVLPDHH------QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA 323 (1124)
Q Consensus 250 faVG~F~~~~~~~------~~~v~~y~~P~~~~~~~~tl~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~ga 323 (1124)
|+||+|+.+++.. +.++++|+.|+..+.+.++++.++++++|||++||.+|||++|++|+||++..++|+++
T Consensus 181 ~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~-- 258 (863)
T TIGR02414 181 LVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENK-- 258 (863)
T ss_pred EEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhccEEecCCCCCcccccc--
Confidence 9999999987531 35689999999999999999999999999999999999999999999997656788888
Q ss_pred eeeeec-cccccCccc-cchhh-hhHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q 001203 324 AMGIFS-SQILYDEKV-IDQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK 400 (1124)
Q Consensus 324 gLii~s-~~lL~~~~~-id~~~-~~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~ry~~~~ 400 (1124)
||++|. ..+|.++.. .+..+ ....+++||+|||||||+||++||+|+|||||||+|++.++.....|....++....
T Consensus 259 GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~ 338 (863)
T TIGR02414 259 GLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVR 338 (863)
T ss_pred ceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeecchhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 688884 556777654 22222 234589999999999999999999999999999999998887776654333222111
Q ss_pred HhhhhhhcccCCCccccCCCCcccCCC---CcccccccchhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCCCCCC
Q 001203 401 ANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRT 477 (1124)
Q Consensus 401 ~~~~~~~~d~~~~~~L~s~~s~~~l~~---~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~~ 477 (1124)
..... ....++.+..+++.+ .++...|+.++|.||++|||||+..||++.|+++|+.|++++++++
T Consensus 339 ~lr~~-------~f~~D~~p~~~Pi~~~~~~~i~~~y~~i~Y~KGA~vLrML~~~LGee~F~~gLr~Yl~r~~~~~---- 407 (863)
T TIGR02414 339 LLRAH-------QFPEDAGPMAHPVRPESYVEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFSRHDGQA---- 407 (863)
T ss_pred HHHhh-------hhcccccccCCCCCCcchhhHHhccchHHhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC----
Confidence 11110 111111222223321 2344678899999999999999999999999999999999999885
Q ss_pred CCHHHHHHHHHHhcCCCCcCHHHHHHHHHcCCCcceEEEEEEEeccccEEEEEEEeeccCCCCCCCCccCCCCCCCCCCC
Q 001203 478 LSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 557 (1124)
Q Consensus 478 lst~~F~~l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1124)
++++||++.+++++ |.|+.+|+ +|++++|+|.++|+.+|+.++...+++++|.+.... ....
T Consensus 408 at~~Df~~ale~as---g~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~~~~~~--------------~~~~ 469 (863)
T TIGR02414 408 VTCEDFVAAMEDAS---GRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQSTPPTP--------------GQTE 469 (863)
T ss_pred CCHHHHHHHHHHHh---CCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEEeCCCCC--------------CCCc
Confidence 79999999999987 46899985 899999999999999998777778888888653211 0012
Q ss_pred CCCcceeEEEEEEccCCc-cccccccCCCCc--eEEEeeeccchhhHhhhcCCCCCCCCCCCCCCCCccccccccccCCC
Q 001203 558 DIGWPGMMSIRVHELDGM-YDHPILPMAGDA--WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMES 634 (1124)
Q Consensus 558 ~~~~~gpmtIri~E~DGt-~eh~v~~i~~~~--~~~~ei~~~sKy~~~R~~k~kk~~~~~~~~~~~d~~~~~d~~~~~~~ 634 (1124)
...|..|++|.+...+|. .... ..++. -..+++.. + + .. +.-.+ -.+.
T Consensus 470 ~~~~~iPl~i~l~~~~G~~~~~~---~~~~~~~~~~l~l~~----------~----------~--~~-f~f~~---~~~~ 520 (863)
T TIGR02414 470 KKPLHIPIAVGLLGPNGRKLMLS---LDGERDTTRVLELTE----------A----------E--QT-FVFEG---IAEK 520 (863)
T ss_pred CCceEEEEEEEEEeCCCCEeeec---ccCCCCcceEEEEcc----------C----------E--EE-EEEcC---CCCC
Confidence 346999999999988885 2110 11110 11122210 0 0 00 00000 0123
Q ss_pred CceEEEEcCCCcEEEEEccCCCHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 001203 635 PLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (1124)
Q Consensus 635 p~~WIRiDpd~ewl~~v~~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~ 682 (1124)
|+ +.++++|.-..++..++++..+..|+++|.|..+|.||.+.|..
T Consensus 521 p~--~sl~r~fsapv~l~~~~~~~~l~~l~~~d~d~~~r~~a~q~l~~ 566 (863)
T TIGR02414 521 PV--PSLLRGFSAPVNLEYPYSDEDLLLLLAHDSDPFNRWEAGQRLAR 566 (863)
T ss_pred Ce--eeecCCCCceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 44 88999999999999999999999999999999999999999975
No 4
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=2.2e-64 Score=638.00 Aligned_cols=433 Identities=15% Similarity=0.186 Sum_probs=330.2
Q ss_pred CCeEEEEEEEEEEEECCCc--EEEEEEEEEEEe-CCccEEEEEcCCceeEEEEEcCe-eeeeeecCCCcccchhhhhhcc
Q 001203 17 SGAVVRHQKLCLSIDMEKH--QIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGE-PTEFEYYPHNHQNVENEKRWRS 92 (1124)
Q Consensus 17 ~~~~~~Hy~l~L~id~~~~--~~~G~v~Iti~~-~~l~~I~L~a~~L~I~~V~Vng~-~~~f~~~~~~~~~~~~~~~~~~ 92 (1124)
..+++.||+|.|+++.+.. ++.|.++|++.+ .+++.|.||+.+++|++|++||. ++.+.+.+
T Consensus 12 ~~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~~~~~~~~~~-------------- 77 (831)
T TIGR02412 12 SLITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGILDVAPVYDG-------------- 77 (831)
T ss_pred HhccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCcccCccccCC--------------
Confidence 4678999999999986655 458888888876 46789999999999999999996 33222211
Q ss_pred cccCCChhhhHHHHHHHHhhhcCCcCcEEEEcCCCCCCccccccceeeeEEEeeeccccc-cceeEEEEEEEecccccce
Q 001203 93 MVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ-NVKLVRIDYWVEKVEVGIH 171 (1124)
Q Consensus 93 lv~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~v~i~y~~~~p~~Gi~ 171 (1124)
..|.++. ++.| .++++ +.|.+.... ..|+++ | . .|.+|
T Consensus 78 ---------------------------~~i~l~~----l~~g--~~~l~--i~~~~~~~~~~~Gl~~--~-~-~~~~g-- 116 (831)
T TIGR02412 78 ---------------------------SRIPLPG----LLTG--ENTLR--VEATRAYTNTGEGLHR--F-V-DPVDG-- 116 (831)
T ss_pred ---------------------------CEEEccC----CCCC--ceEEE--EEEEEEecCCCceEEE--E-E-eCCCC--
Confidence 1222211 2222 12232 233332221 124444 2 2 24455
Q ss_pred eecceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCccceeeeecCCCCCeEEEEEccCCcchHhHHhh
Q 001203 172 FDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLA 251 (1124)
Q Consensus 172 F~~~~~~T~~ep~~AR~wFPC~D~P~~Katf~L~ItvP~~~~avSnG~L~~~~~~~~~~~~kt~~F~~t~P~s~yliafa 251 (1124)
..+++||+||.+||+||||||+|+.||+|+++|++|++|+|+|||++.+.. ..+++++++|+.++|||+|+++|+
T Consensus 117 --~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v~sNg~~~~~~---~~~~~~~~~F~~t~pmstYL~a~~ 191 (831)
T TIGR02412 117 --EVYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTVISNSRETDVT---PEPADRRWEFPETPKLSTYLTAVA 191 (831)
T ss_pred --eEEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceEECCCcccccc---ccCCCeEEEecCCCCcccceEEEE
Confidence 367899999999999999999999999999999999999999999987543 245678999999999999999999
Q ss_pred ccCceEeecC-CCCceEEEecCChhhh--HHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCcccccccccceeeee
Q 001203 252 VAPFEVLPDH-HQSLMSHICLPANVSK--IHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF 328 (1124)
Q Consensus 252 VG~F~~~~~~-~~~~v~~y~~P~~~~~--~~~tl~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gagLii~ 328 (1124)
||+|+.++.. .+.++++|++|+..+. ..+++..+.++++||+++||+||||+||++|++|++..++|+++ |++++
T Consensus 192 vG~f~~~~~~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e~~fg~pYP~~k~d~V~vP~f~~GaMEn~--Glit~ 269 (831)
T TIGR02412 192 AGPYHSVQDESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHRKFGYPYPFKKYDQIFVPEFNAGAMENA--GCVTF 269 (831)
T ss_pred EeceEEEeecCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCEEEcCCCCCCccccc--ceeee
Confidence 9999998754 3578999999987654 56789999999999999999999999999999997656688887 68899
Q ss_pred ccccccCccccchh-hhhHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHhh-hhh
Q 001203 329 SSQILYDEKVIDQA-IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANC-AVC 406 (1124)
Q Consensus 329 s~~lL~~~~~id~~-~~~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~ry~~~~~~~-~~~ 406 (1124)
.+.+|+++...+.. .....+|+||+|||||||+||++||+|+|||||||+||+++++++..|.... +....... ...
T Consensus 270 ~e~~l~~~~~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~~~~~~-~~~f~~~~~~~a 348 (831)
T TIGR02412 270 AENFLHRAEATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWLNESFAEYMGTLASAEATEYTDA-WTTFAAQGKQWA 348 (831)
T ss_pred chhhccCCcCCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhHHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHH
Confidence 77777765443222 2233589999999999999999999999999999999999999988765332 11111000 000
Q ss_pred hcccCCCccccCCCCcccCCC-CcccccccchhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Q 001203 407 KADDSGATALSSSASCKDLYG-TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRH 485 (1124)
Q Consensus 407 ~~d~~~~~~L~s~~s~~~l~~-~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~~lst~~F~~ 485 (1124)
...+.. + .+.|...++.+ .++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ ++++||++
T Consensus 349 ~~~D~~--~-~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lGee~F~~glr~Yl~~~~~~n----at~~Dl~~ 421 (831)
T TIGR02412 349 YEADQL--P-TTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVGEEAFFAGVNAYFKRHAFGN----ATLDDLID 421 (831)
T ss_pred HHHhcc--c-CCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHCHHHHHHHHHHHHHHcCCCC----CCHHHHHH
Confidence 001110 0 01111122211 2334578999999999999999999999999999999999999996 79999999
Q ss_pred HHHHhcCCCCcCHHHHHHHHHcCCCcceEEEEEEEec
Q 001203 486 FANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNK 522 (1124)
Q Consensus 486 l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~ 522 (1124)
.+++++ |.|+++||++|++++|+|.++|+..++.
T Consensus 422 ~l~~~s---g~dl~~~~~~W~~~~G~P~l~v~~~~~~ 455 (831)
T TIGR02412 422 SLAKAS---GRDLSAWSDAWLETAGVNTLTPEITTDG 455 (831)
T ss_pred HHHHHh---CCCHHHHHHHHHcCCCCceEEEEEEECC
Confidence 999887 5689999999999999999999988765
No 5
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-64 Score=635.57 Aligned_cols=585 Identities=18% Similarity=0.244 Sum_probs=417.8
Q ss_pred CCCCCCeEEEEEEEEEEEECCCcEEEEEEEEEEEeC-CccEEEEEcCCceeEEEEEcCeeee-eeecCCCcccchhhhhh
Q 001203 13 KVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-DIGIVGLHAENLGIESVLVDGEPTE-FEYYPHNHQNVENEKRW 90 (1124)
Q Consensus 13 ~~~~~~~~~~Hy~l~L~id~~~~~~~G~v~Iti~~~-~l~~I~L~a~~L~I~~V~Vng~~~~-f~~~~~~~~~~~~~~~~ 90 (1124)
.+....++|.||+|.|.+++....|.|.+.|.+.+. +++.|+||+.++.|.++.+...... ...... ..
T Consensus 29 ~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~--------~~- 99 (882)
T KOG1046|consen 29 YRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEV--------SV- 99 (882)
T ss_pred ccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCcccccc--------cc-
Confidence 466789999999999999999999999999999884 6899999999999999988432111 000000 00
Q ss_pred cccccCCChhhhHHHHHHHHhhhcCCcCcEEEEcCCCCCCccccccceeeeEEEeeeccccccc-eeEEEEEEEeccccc
Q 001203 91 RSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNV-KLVRIDYWVEKVEVG 169 (1124)
Q Consensus 91 ~~lv~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~v~i~y~~~~p~~G 169 (1124)
........+.+..+. .+..+. .+++ .+.|.|..+... |+|+..|...++ |
T Consensus 100 ---------------------~~~~~~~~l~~~~~~---~l~~~~-~y~L--~i~f~g~l~~~~~G~y~s~y~~~~~--~ 150 (882)
T KOG1046|consen 100 ---------------------EEKEQEETLVFPLNE---TLLAGS-SYTL--TIEFTGKLNDSSEGFYRSSYTDSEG--S 150 (882)
T ss_pred ---------------------cccccceEEEEEccc---ccccCC-eEEE--EEEEeEeecCCcceeeeecccCCCC--c
Confidence 000000124443321 222222 1333 567888887664 899988865332 2
Q ss_pred ceeecceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCccceeeeecCCCCCeEEEEEccCCcchHhHH
Q 001203 170 IHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWIT 249 (1124)
Q Consensus 170 i~F~~~~~~T~~ep~~AR~wFPC~D~P~~Katf~L~ItvP~~~~avSnG~L~~~~~~~~~~~~kt~~F~~t~P~s~ylia 249 (1124)
- ..++.||+||++||..|||||+|+.||||.|++.+|++++++|||+.+++.. .++++++.+|+.|+|||+|++|
T Consensus 151 ~---~~~~~Tqfept~AR~~FPCfDeP~~KAtF~Itl~hp~~~~aLSNm~v~~~~~--~~~~~~~~~F~~Tp~MstYLvA 225 (882)
T KOG1046|consen 151 E---KSIAATQFEPTDARRAFPCFDEPAFKATFTITLVHPKGYTALSNMPVIKEEP--VDDGWKTTTFEKTPKMSTYLVA 225 (882)
T ss_pred e---EEEEEeccCccchhhcCCCCCcccccCceEEEEEecCCceEeecCccccccc--ccCCeeEEEEEecCCCchhhhe
Confidence 1 4678999999999999999999999999999999999999999999887664 3445999999999999999999
Q ss_pred hhccCceEeecCCC--CceEEEecCChhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCcccccccccceeee
Q 001203 250 LAVAPFEVLPDHHQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGI 327 (1124)
Q Consensus 250 faVG~F~~~~~~~~--~~v~~y~~P~~~~~~~~tl~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gagLii 327 (1124)
|+||+|+..+.... .++++|+.|+...+..++++.+.++++||+++||++||++|+|+|+||++..++|++| ||++
T Consensus 226 f~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENw--GLvt 303 (882)
T KOG1046|consen 226 FAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENW--GLVT 303 (882)
T ss_pred eeeeccccceeecCCCceEEEEeChHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCccccEEecCCccccchhcC--ccee
Confidence 99999999877654 7899999999999999999999999999999999999999999999998888899999 7999
Q ss_pred e-ccccccCccccch--hhhhHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHhhh
Q 001203 328 F-SSQILYDEKVIDQ--AIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCA 404 (1124)
Q Consensus 328 ~-s~~lL~~~~~id~--~~~~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~ry~~~~~~~~ 404 (1124)
| +..+|+++..... ......+||||+|||||||+||++||+|+|||||||+||+++.++..++.....-. ...+.
T Consensus 304 yre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~--~~~~~ 381 (882)
T KOG1046|consen 304 YRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTMKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQ--FLLEN 381 (882)
T ss_pred eeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccHhhhhhhhhcccHHHHHHHHhhccCCcchhhHHH--HHHHH
Confidence 9 6789999865433 33445699999999999999999999999999999999999999988776543211 11111
Q ss_pred hhhcccCCCccccCCCCcccC-----CCCcccccccchhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCCCCCCCC
Q 001203 405 VCKADDSGATALSSSASCKDL-----YGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLS 479 (1124)
Q Consensus 405 ~~~~d~~~~~~L~s~~s~~~l-----~~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~~ls 479 (1124)
++ .++..++..+++++ .+.++.+.|++++|.||++|||||+..+|++.|++||+.||.+++++| ++
T Consensus 382 l~-----~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasvlRML~~~lGe~~F~~gi~~yL~~~~y~n----a~ 452 (882)
T KOG1046|consen 382 LE-----RVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASVLRMLESLLGEEVFRKGLRSYLKKHQYSN----AK 452 (882)
T ss_pred HH-----HHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHHHHHHHHHHCHHHHHHHHHHHHHHhccCC----CC
Confidence 11 11122222222222 233445689999999999999999999999999999999999999996 57
Q ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHHcCCCcceEEEEEEEeccccEEEEEEEeeccCCCCCCCCccCCCCCCCCCCCCC
Q 001203 480 TKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDI 559 (1124)
Q Consensus 480 t~~F~~l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1124)
++|+++.++.. .+.|+..||+.|+.|+|+|+++|+.+++ .+.++|.++..... ..+...
T Consensus 453 ~~DLw~~l~~~---~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~----~~~l~Q~rf~~~~~--------------~~~~~~ 511 (882)
T KOG1046|consen 453 TEDLWDALEEG---SGLDVSELMDTWTKQMGYPVVTVERNGD----SLTLTQERFLSDPD--------------PSEDNY 511 (882)
T ss_pred chhHHHHHhcc---CCCCHHHHHhhhhcCCCCceEEEEecCC----EEEEehhhhccCCC--------------ccccCc
Confidence 78887777622 2579999999999999999999999875 56666555432110 012245
Q ss_pred CcceeEEEEEEccCCccccccccCCCCceEEEeeeccchhhHhhhcCCCCCCCCCCCCCCCCccccccccccCCCCceEE
Q 001203 560 GWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWI 639 (1124)
Q Consensus 560 ~~~gpmtIri~E~DGt~eh~v~~i~~~~~~~~ei~~~sKy~~~R~~k~kk~~~~~~~~~~~d~~~~~d~~~~~~~p~~WI 639 (1124)
.|..|+++....... + .++.+. ++ ... + . ...+.+||
T Consensus 512 ~w~iPl~~~~~~~~~-~------------~~~~~~-----------~~--~~~----------~-~------l~~~~~wi 548 (882)
T KOG1046|consen 512 LWWIPLTYTTSGSGS-V------------PKFWLS-----------SK--STT----------I-K------LPESDQWI 548 (882)
T ss_pred ccceeEEEEcCCCCc-c------------ceeeec-----------CC--Ccc----------e-e------cCCCCeEE
Confidence 799999886553110 1 001110 00 000 0 0 01223899
Q ss_pred EEcCCCcEEEEEccCCC-HHHHHHHHhhCC---CcHHHHHH---HHHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHH
Q 001203 640 RADPEMEYLAEIHFNQP-VQMWINQLEKDG---DVVAQAQA---IAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAA 712 (1124)
Q Consensus 640 RiDpd~ewl~~v~~~qp-~~m~~~QL~~dr---DV~aQ~eA---i~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa 712 (1124)
.++++..=..+|+++.- ....+.||.. + .+.-|..= +.+|+.....+....-.|..-+.++ ..|.+...|.
T Consensus 549 ~~N~~~~g~yRV~Yd~~~w~~l~~~l~~-~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e-~~~~p~~~~~ 626 (882)
T KOG1046|consen 549 KVNLEQTGYYRVNYDDENWALLIEQLKN-HESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNE-TDYVPWSAAI 626 (882)
T ss_pred EEeCCcceEEEEEeCHHHHHHHHHHHhh-cCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcc-cccchHHHHH
Confidence 99999999999999753 3344455533 2 12222111 1222322222222233355555555 3666666665
Q ss_pred HHHHccc
Q 001203 713 YALANTA 719 (1124)
Q Consensus 713 ~aLa~~~ 719 (1124)
.+|..+.
T Consensus 627 ~~l~~~~ 633 (882)
T KOG1046|consen 627 RSLYKLH 633 (882)
T ss_pred HHHHHHh
Confidence 5555444
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=9.1e-62 Score=592.06 Aligned_cols=436 Identities=19% Similarity=0.273 Sum_probs=329.7
Q ss_pred CCC-CCeEEEEEEEEEEEECCCcEEEEEEEEEEEeC--CccEEEEEcCCceeEEEEEcCeeeeeeecCCCcccchhhhhh
Q 001203 14 VEN-SGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP--DIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRW 90 (1124)
Q Consensus 14 ~~~-~~~~~~Hy~l~L~id~~~~~~~G~v~Iti~~~--~l~~I~L~a~~L~I~~V~Vng~~~~f~~~~~~~~~~~~~~~~ 90 (1124)
.+| ..++|.||+|+|++|+++++|.|+|+|++.+. +++.|.||+++|+|++|.++|.++.|+..+. ..
T Consensus 5 ~sn~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~~~~~~~~~~-~~-------- 75 (601)
T TIGR02411 5 LSNYKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGLPADFAIGER-KE-------- 75 (601)
T ss_pred ccCCCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCcccceEeccc-cC--------
Confidence 444 36999999999999999999999999999873 4678999999999999999998887765421 00
Q ss_pred cccccCCChhhhHHHHHHHHhhhcCCcCcEEEEcCCCCCCccccccceeeeEEEeeeccccccceeEEEEEEEec-cccc
Q 001203 91 RSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEK-VEVG 169 (1124)
Q Consensus 91 ~~lv~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v~i~y~~~~-p~~G 169 (1124)
-....|.|.++.+ +..+. .+ .+.+.|+|.++. .|+ +|+.. -.+|
T Consensus 76 ------------------------~~g~~L~I~l~~~---l~~g~-~~--~l~I~Y~~~~~~-~gl----~~~~~~~t~g 120 (601)
T TIGR02411 76 ------------------------PLGSPLTISLPIA---TSKNK-EL--VLNISFSTTPKC-TAL----QWLTPEQTSG 120 (601)
T ss_pred ------------------------CCCCeEEEEeCCc---cCCCc-eE--EEEEEEeecCCC-cee----EEecccccCC
Confidence 0123588876432 22222 23 345678777643 232 23321 1122
Q ss_pred ceeecceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCccceeeeecCCCCCeEEEEEccCCcchHhHH
Q 001203 170 IHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWIT 249 (1124)
Q Consensus 170 i~F~~~~~~T~~ep~~AR~wFPC~D~P~~Katf~L~ItvP~~~~avSnG~L~~~~~~~~~~~~kt~~F~~t~P~s~ylia 249 (1124)
- ..++++|||||.+||+||||+|+|+.|+||+++|++| ++|++||.++.+. .++..+++|++++|||+|++|
T Consensus 121 ~--~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I~~P--~~av~sg~~~~~~----~~~~~~~~F~~t~pmptYLia 192 (601)
T TIGR02411 121 K--KHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAEVESP--LPVLMSGIPDGET----SNDPGKYLFKQKVPIPAYLIA 192 (601)
T ss_pred C--CCCEEEECCcccchheeeeecCCcccceEEEEEEeeC--cceeccCCccccc----cCCCceEEEEeCCCcchhhhe
Confidence 1 2478999999999999999999999999999999999 9999999876543 234568999999999999999
Q ss_pred hhccCceEeecCCCCceEEEecCChhhhHHHHHH-HHHHHHHHHHHhcCCCCCCCCccEEEeCC-Ccccccccccceeee
Q 001203 250 LAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQVFLAP-EMAVSSSTFGAAMGI 327 (1124)
Q Consensus 250 faVG~F~~~~~~~~~~v~~y~~P~~~~~~~~tl~-~~~~al~ffee~fG~~YPf~ky~~VfVp~-~~~~~~~~~gagLii 327 (1124)
|+||+|+..+. +..+++|+.|+..+.+++.+. .+.++++++|+++| ||||+||++|++|+ ...++|+++ |+++
T Consensus 193 ~avG~~~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~--~ltf 267 (601)
T TIGR02411 193 LASGDLASAPI--GPRSSVYSEPEQLEKCQYEFEHDTENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENP--NLTF 267 (601)
T ss_pred eeeccceeccc--CCceEEEccchhHHHHHHHHHHhHHHHHHHHHHhCC-CCcCccceEEEecCcccccccccc--ccee
Confidence 99999997653 567899999998888888888 89999999998765 99999999998854 335678887 4555
Q ss_pred eccccccCccccchhhhhHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHhCChHHHHHHHH---Hhhh
Q 001203 328 FSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK---ANCA 404 (1124)
Q Consensus 328 ~s~~lL~~~~~id~~~~~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~ry~~~~---~~~~ 404 (1124)
.+..+|.+.+ ....+||||||||||||+||++||+|+|||||||+|++.+++++.+|++.+.+.... ....
T Consensus 268 ~~~~ll~~d~------s~~~viaHElAHqWfGNlVT~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~ 341 (601)
T TIGR02411 268 ATPTLIAGDR------SNVDVIAHELAHSWSGNLVTNCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQE 341 (601)
T ss_pred eccccccCCh------hhhhhHHHHHHhhccCceeecCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHH
Confidence 5667765432 123589999999999999999999999999999999999999999998865443211 1111
Q ss_pred hhhcccCCCccccCCCCcccCCCCcccccccchhhhhHHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCCCCCCCCHHHH
Q 001203 405 VCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEF 483 (1124)
Q Consensus 405 ~~~~d~~~~~~L~s~~s~~~l~~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG-~e~F~~~L~~yl~~~~~~~~~~~lst~~F 483 (1124)
.+.. .....+.... ..++...++.+.|+.+.|.||+++|||||..+| ++.|+++|+.|++++++++ +++++|
T Consensus 342 ~~~~-~~~~~~~~~~--~~~~~~~dp~~~f~~i~Y~KGa~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s----~~t~df 414 (601)
T TIGR02411 342 SVKT-LGEDPEYTKL--VVDLKDNDPDDAFSSVPYEKGFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKS----LDTYQF 414 (601)
T ss_pred HHHh-hcCCCCCCcc--cccCCCCChhhhccccchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCC----CCHHHH
Confidence 1100 0000111110 011222245678999999999999999999999 9999999999999999985 899999
Q ss_pred HHHHHHhcCC--CCcCHHHH-HHHHHcCCCcceEEEEEE
Q 001203 484 RHFANKVGNL--ERPFLKEF-FPRWVGTCGCPVLRMGFS 519 (1124)
Q Consensus 484 ~~l~e~vs~~--~g~dL~~F-f~qWv~~~G~P~l~V~~~ 519 (1124)
++.+++.... .+.+++.+ |++|++++|+|.+.+.+.
T Consensus 415 ~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 415 KDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 9987665311 12467766 999999999999876653
No 7
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-58 Score=580.79 Aligned_cols=525 Identities=20% Similarity=0.277 Sum_probs=388.6
Q ss_pred EEEEEE--EECCCcEEEEEEEEEEEe--C-CccEEEEEcCCceeEEEEEcCeeeee--eecCCCcccchhhhhhcccccC
Q 001203 24 QKLCLS--IDMEKHQIYGYTELEIAV--P-DIGIVGLHAENLGIESVLVDGEPTEF--EYYPHNHQNVENEKRWRSMVSS 96 (1124)
Q Consensus 24 y~l~L~--id~~~~~~~G~v~Iti~~--~-~l~~I~L~a~~L~I~~V~Vng~~~~f--~~~~~~~~~~~~~~~~~~lv~~ 96 (1124)
|++.|+ +++++..|.|.+++++.. . ....|.||+++|+|.+|.+||.+... .+...
T Consensus 25 ~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~~~~~~~~~~----------------- 87 (859)
T COG0308 25 YDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKALTAWYRLDGD----------------- 87 (859)
T ss_pred cceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccccccccccCc-----------------
Confidence 555554 455559999999999965 3 33349999999999999999986543 22211
Q ss_pred CChhhhHHHHHHHHhhhcCCcCcEEEEcCCCCCCccccccceeeeEEEeeeccccc--cceeEEEEEEEecccccceeec
Q 001203 97 PSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ--NVKLVRIDYWVEKVEVGIHFDG 174 (1124)
Q Consensus 97 ~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~--~~~~v~i~y~~~~p~~Gi~F~~ 174 (1124)
.+.|....+. .. .+....++.+.+.+.+.... -.|+++ ...+ + .
T Consensus 88 ----------------------~~~i~~~~~~-~~-~~~~~~~l~i~~~~~~~~s~~~~~Gly~----~~~~--~----~ 133 (859)
T COG0308 88 ----------------------ALTITVAPPI-PE-RSERPFTLAITYEFTGPVSNDTLEGLYR----SGYG--G----K 133 (859)
T ss_pred ----------------------cceeeecccc-cc-ccCCCccEEEEEEecccccCccccceee----cCCC--C----C
Confidence 1122110000 00 00011223333344433221 112222 1111 1 4
Q ss_pred ceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCccceeeeecCCCCCeEEEEEccCCcchHhHHhhccC
Q 001203 175 NALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254 (1124)
Q Consensus 175 ~~~~T~~ep~~AR~wFPC~D~P~~Katf~L~ItvP~~~~avSnG~L~~~~~~~~~~~~kt~~F~~t~P~s~yliafaVG~ 254 (1124)
.+++||||+.+||+||||+|+|+.|+||+++|++++++++||||+++.... ..+++++++|..++|||+|++++++|+
T Consensus 134 ~~~~TQ~Ea~~aR~~fpc~D~P~~katf~~~i~~~k~~~~iSN~~~~~~~~--~~~g~~~~~f~~~~~mptYL~al~~G~ 211 (859)
T COG0308 134 PYLITQCEAEGARRIFPCIDEPDVKATFTLTIRADKGPKLISNGNLIDGGT--LVDGRKIVKFEDTPPMPTYLFALVAGD 211 (859)
T ss_pred eeEEeecccCCCceeeecCCCCCCcceeEEEEEecCcceeeecCCcccccc--ccCCcEEEEEcCCCCcchHhhheeeec
Confidence 679999999999999999999999999999999999999999999987653 335699999999999999999999999
Q ss_pred ceEeecCC-----CCceEEEecCChhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCcccccccccceeeeec
Q 001203 255 FEVLPDHH-----QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFS 329 (1124)
Q Consensus 255 F~~~~~~~-----~~~v~~y~~P~~~~~~~~tl~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gagLii~s 329 (1124)
|+++++.. ..++.+|+.|+..+.++++++.+.++++||+++||.+||+++ .+|+||++..++|+|+ |++++.
T Consensus 212 ~~~~~~~~~~~~~~v~l~iy~~~g~~~~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~--Gl~tf~ 288 (859)
T COG0308 212 LEVFRDKFDTRSRDVPLEIYVPPGVLDRAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENW--GLVTFR 288 (859)
T ss_pred ceeeeeeeccCCCCeeEEEEecCcchhhhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCcccccc--ceeEEe
Confidence 99988765 578999999999999999999999999999999999999999 9999998778889998 568884
Q ss_pred -cccccCcc-ccchhhh-hHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHhhhhh
Q 001203 330 -SQILYDEK-VIDQAID-TSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVC 406 (1124)
Q Consensus 330 -~~lL~~~~-~id~~~~-~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~ry~~~~~~~~~~ 406 (1124)
..+|.+++ ..+..+. ...+++||+|||||||+||++||+|+|||||||+|++..+.+.+.|....++..+....
T Consensus 289 ~~~ll~~~~~at~~~~~~~~~viaHElaHqWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~--- 365 (859)
T COG0308 289 EKYLLADPETATDSDYENVEEVIAHELAHQWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLR--- 365 (859)
T ss_pred eeEEeeCcccchhHHHHHHHHHHHHHHhhhcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHh---
Confidence 45777753 3444443 33489999999999999999999999999999999999999999883332222222111
Q ss_pred hcccCCCccccCCCCcccC----C-CCcccccccchhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCCCCCCCCHH
Q 001203 407 KADDSGATALSSSASCKDL----Y-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTK 481 (1124)
Q Consensus 407 ~~d~~~~~~L~s~~s~~~l----~-~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~~lst~ 481 (1124)
...++..++.+..+++ + +.++...||.++|.||+.|+|||+..+|++.|+++|+.|+++|.+++ .+++
T Consensus 366 ---~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~----~~~~ 438 (859)
T COG0308 366 ---TSIALAEDSLPSSHPIRVDVYDPKEINDFFDAIVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGN----ATTM 438 (859)
T ss_pred ---hhHHHhhccccccCCcccCCCCccchhhhcchhhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCC----CCHH
Confidence 1112222333333333 2 35677899999999999999999999999999999999999999996 7999
Q ss_pred HHHHHHHHhcCCCCcCHHHHHHHHHcCCCcceEEEEEEEeccccEEEEEEEeeccCCCCCCCCccCCCCCCCCCCCCCCc
Q 001203 482 EFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGW 561 (1124)
Q Consensus 482 ~F~~l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (1124)
+|++..+.++ |+|+.++|++|++++|+|++.|+.+++. .+.|+|.|..... ......|
T Consensus 439 Dl~~a~~~~s---g~dl~~~~~~w~~q~G~P~l~v~~~~~~---~~~l~~~q~~~~~----------------~~~~~~~ 496 (859)
T COG0308 439 DLWKALEDAS---GKDLSAFFESWLSQAGYPVLTVSVRYDD---FFKLTQKQFTPPG----------------QEEKRPW 496 (859)
T ss_pred HHHHHHHHHh---CCcHHHHHHHHHhCCCCCceeeeeeccc---cEEEEEEEeccCC----------------CccCcee
Confidence 9999999998 5799999999999999999999999875 5668888875321 0123468
Q ss_pred ceeEEEEEEccCCccccccccCCCCc-eEEEeeeccchhhHhhhcCCCCCCCCCCCCCCCCccccccccccCCCCceEEE
Q 001203 562 PGMMSIRVHELDGMYDHPILPMAGDA-WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIR 640 (1124)
Q Consensus 562 ~gpmtIri~E~DGt~eh~v~~i~~~~-~~~~ei~~~sKy~~~R~~k~kk~~~~~~~~~~~d~~~~~d~~~~~~~p~~WIR 640 (1124)
+.|+.+...+.+|. + ++.+.++. ...++ ......++.
T Consensus 497 ~iPl~~~~~~~~~~--~-~~~~~~~~~t~~~~---------------------------------------~~~~~~~~~ 534 (859)
T COG0308 497 PIPLAIKLLDGGGV--K-VLLLTEGEQTVTFE---------------------------------------LVGIPPFPS 534 (859)
T ss_pred eeccEEEecCCCCc--e-eeeeeccceEEEEe---------------------------------------cccCCccce
Confidence 89998888876661 1 11111111 11111 011234566
Q ss_pred EcCCCcEEEEEccCCCHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 001203 641 ADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (1124)
Q Consensus 641 iDpd~ewl~~v~~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~ 682 (1124)
++..+.......+..++..|..++++++ +.+|+..+..
T Consensus 535 ~~~~~~~~~~~~~~y~~~~l~~~~~~~~----~~~~~~~~~~ 572 (859)
T COG0308 535 LKVNDSAPVFYRVDYSDQSLSKLLQHDP----RLEAAQRLAL 572 (859)
T ss_pred eeccCCccceEEEecCHHHHHHHHhhhh----hhhHHHHHhh
Confidence 7778888888899999999999999988 7777776654
No 8
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=7.7e-54 Score=502.68 Aligned_cols=379 Identities=22% Similarity=0.330 Sum_probs=279.3
Q ss_pred CCCCeEEEEEEEEEEEECCCcEEEEEEEEEEEe-CCccEEEEEcCCceeEEEEEcCeeeeeeecCCCcccchhhhhhccc
Q 001203 15 ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSM 93 (1124)
Q Consensus 15 ~~~~~~~~Hy~l~L~id~~~~~~~G~v~Iti~~-~~l~~I~L~a~~L~I~~V~Vng~~~~f~~~~~~~~~~~~~~~~~~l 93 (1124)
....+.|.||+|.|++|+++..|+|.++|++.+ .+++.|.||+.+++|.+|.++|.......... . +
T Consensus 2 Lp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~~~~~~--~-------~--- 69 (390)
T PF01433_consen 2 LPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSSEYKSS--P-------F--- 69 (390)
T ss_dssp --TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSCTECCE--E-------E---
T ss_pred CCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCcccccccccc--c-------e---
Confidence 456899999999999999999999999999987 57899999999999999999987654211100 0 0
Q ss_pred ccCCChhhhHHHHHHHHhhhcCCcCcEEEEcCCCCCCccccccceeeeEEEeeeccccc-cceeEEEEEEEeccccccee
Q 001203 94 VSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ-NVKLVRIDYWVEKVEVGIHF 172 (1124)
Q Consensus 94 v~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~v~i~y~~~~p~~Gi~F 172 (1124)
-.......|.|.++. .+..+. .+++ .+.|+|.+.. ..|+++..|.... .| .
T Consensus 70 ------------------~~~~~~~~l~I~l~~---~l~~g~-~~~L--~I~y~g~~~~~~~G~~~~~y~~~~--~~--~ 121 (390)
T PF01433_consen 70 ------------------EYDDENEKLTITLPK---PLPPGS-NYTL--RIEYSGKISDDSSGLYRSSYTDQT--NG--N 121 (390)
T ss_dssp ------------------EEECCBTEEEEEEEE---ECSTTE-EEEE--EEEEEEECBSSSSEEEEEEEE-GT--SS--S
T ss_pred ------------------eeccccceeehhhhh---hcccCc-EEEE--EEEEeecccccccccccceeeccc--cc--c
Confidence 000112247776543 232222 1344 5688887665 4588888886511 12 1
Q ss_pred ecceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCccceeeeecCCCCCeEEEEEccCCcchHhHHhhc
Q 001203 173 DGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAV 252 (1124)
Q Consensus 173 ~~~~~~T~~ep~~AR~wFPC~D~P~~Katf~L~ItvP~~~~avSnG~L~~~~~~~~~~~~kt~~F~~t~P~s~yliafaV 252 (1124)
..++++|++||.+||+||||+|+|+.||+|+++|++|++++|+|||++.++... ++++++++|..++|||+|++||+|
T Consensus 122 ~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p~~~~~~sng~~~~~~~~--~~~~~~~~f~~t~p~~~yl~a~~v 199 (390)
T PF01433_consen 122 TRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHPKDYTALSNGPLEEEESN--DDGWKTTTFETTPPMPTYLFAFAV 199 (390)
T ss_dssp ETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEETTTEEEESSEEEEEEEE--TTTEEEEEEEEEEEEEGGG--EEE
T ss_pred cCCceeecccccccceeeeeeccCCccceEEEeeeccccceeeccccccccccc--cccceeEeeecccccCchhhhhhc
Confidence 257899999999999999999999999999999999999999999999987653 367999999999999999999999
Q ss_pred cCceEeecCCC--CceEEEecCChhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCcccccccccceeeee-c
Q 001203 253 APFEVLPDHHQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-S 329 (1124)
Q Consensus 253 G~F~~~~~~~~--~~v~~y~~P~~~~~~~~tl~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gagLii~-s 329 (1124)
|+|+.++.... .++++|++|+..+.++++++.+.++++||+++||.+|||++|++|++|+...++|+++ |++++ +
T Consensus 200 g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~--g~i~~~~ 277 (390)
T PF01433_consen 200 GDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKALEYYEEYFGIPYPFKKLDIVAVPDFPFGGMENW--GLITYRE 277 (390)
T ss_dssp ESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHHHHHHHHHTS--SSSEEEEEEEST-SSSEE--T--TEEEEEG
T ss_pred CcccccccccccccchheeehhhhHHHHHHHHHhhHHHHHHHHhhccccceecceeEEEEecccccccccc--ccccccc
Confidence 99999876554 5899999999999999999999999999999999999999999999996545667776 56777 5
Q ss_pred cccccCccccchh--hhhHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHhCChHHHHHHH-HHhhhhh
Q 001203 330 SQILYDEKVIDQA--IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRY-KANCAVC 406 (1124)
Q Consensus 330 ~~lL~~~~~id~~--~~~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~ry~~~-~~~~~~~ 406 (1124)
+.++++++..... .....+||||+|||||||+||++||+|+||+||||+|++.+++++.+|......... .......
T Consensus 278 ~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (390)
T PF01433_consen 278 SYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWSDLWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRAL 357 (390)
T ss_dssp GGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHH
T ss_pred cccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccchhhhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHH
Confidence 6688887654332 334568999999999999999999999999999999999999999999554321111 1111112
Q ss_pred hccc-CCCccccCCCCcccC-CCCcccccccchhhhhH
Q 001203 407 KADD-SGATALSSSASCKDL-YGTQCIGIFGKIRSCKS 442 (1124)
Q Consensus 407 ~~d~-~~~~~L~s~~s~~~l-~~~~~~~~f~~i~Y~Kg 442 (1124)
..|. ....++. .++ ...++...|+.+.|.||
T Consensus 358 ~~d~~~~~~pl~-----~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 358 REDALPNSHPLS-----SEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp HHHTSTTCCCSS-----SSSSSESCGGGGSSHHHHHHH
T ss_pred HHhhcCCCcceE-----eCCCCCCChHHhcCccccCCC
Confidence 2222 1112221 122 23455678999999998
No 9
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-47 Score=434.61 Aligned_cols=441 Identities=20% Similarity=0.279 Sum_probs=320.9
Q ss_pred CCCCCCCCCCCCC-CCC-CCeEEEEEEEEEEEECCCcEEEEEEEEEEEeC-CccEEEEEcCCceeEEEEEcCeeeeeeec
Q 001203 1 MAKPRKPKNEETK-VEN-SGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-DIGIVGLHAENLGIESVLVDGEPTEFEYY 77 (1124)
Q Consensus 1 ~~~~r~~~~~~p~-~~~-~~~~~~Hy~l~L~id~~~~~~~G~v~Iti~~~-~l~~I~L~a~~L~I~~V~Vng~~~~f~~~ 77 (1124)
||-+| ||. ..| ..+.+.|+.+.+.+||+.+.+.|.|.+++.+. +...|.||.+++.|.+|++||.+.+|...
T Consensus 1 m~~~~-----Dp~s~sn~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~~~~i~ 75 (613)
T KOG1047|consen 1 MAPRR-----DPSSASNYRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEPPFRIG 75 (613)
T ss_pred CCCCC-----CcccccChhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCCCCccC
Confidence 66666 453 333 46889999999999999999999999999863 33349999999999999999988776543
Q ss_pred CCCcccchhhhhhcccccCCChhhhHHHHHHHHhhhcCCcCcEEEEcCCCCCCccccccceeeeEEEeeeccccccceeE
Q 001203 78 PHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLV 157 (1124)
Q Consensus 78 ~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v 157 (1124)
.. + .+. +..-.+.+. .+ ..+. ++..+ +
T Consensus 76 ~~--~------~~~-----------------------g~~~~~~l~--~~--~~~a-~~~~~-----------------l 102 (613)
T KOG1047|consen 76 FR--Q------PFL-----------------------GSGQKLVLP--AP--SSKA-GERLQ-----------------L 102 (613)
T ss_pred cc--c------CCC-----------------------CCceEEEec--cc--cccc-cCceE-----------------E
Confidence 21 0 000 000013331 11 1111 11112 2
Q ss_pred EEEEEEeccccccee---------ecceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCccceeeeecC
Q 001203 158 RIDYWVEKVEVGIHF---------DGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKD 228 (1124)
Q Consensus 158 ~i~y~~~~p~~Gi~F---------~~~~~~T~~ep~~AR~wFPC~D~P~~Katf~L~ItvP~~~~avSnG~L~~~~~~~~ 228 (1124)
.|.|......+|++| ..+|++||||...||..|||+|.|+.|.||+.+|.+|.++++++++...++. +.
T Consensus 103 ~i~y~Ts~~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~l~a~mSai~~~~~--~~ 180 (613)
T KOG1047|consen 103 LIWYETSPSATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMGLTALMSAIPAGEK--PG 180 (613)
T ss_pred EEEEeccCCcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCcceeeeeccccccC--CC
Confidence 333332222233333 2479999999999999999999999999999999999999999999875543 34
Q ss_pred CCCCeEEEEEccCCcchHhHHhhccCceEeecCCCCceEEEecCChhhhHHHHHH-HHHHHHHHHHHhcCCCCCCCCccE
Q 001203 229 DPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQ 307 (1124)
Q Consensus 229 ~~~~kt~~F~~t~P~s~yliafaVG~F~~~~~~~~~~v~~y~~P~~~~~~~~tl~-~~~~al~ffee~fG~~YPf~ky~~ 307 (1124)
..++.+++|.+..|+++|++||++|+.+..+. +..-++|+.|...+.....+. .+.+++.--|+.+| ||+|+.||+
T Consensus 181 ~~~~~~f~f~q~~pIP~YLiai~~G~L~s~eI--gpRs~VwaEp~~~~a~~~ef~~~~e~~L~~Ae~l~G-pY~WgryDl 257 (613)
T KOG1047|consen 181 SNGRAIFRFKQEVPIPSYLIAIAVGDLESREI--GPRSRVWAEPCLLDACQEEFAGETEDFLKAAEKLFG-PYVWGRYDL 257 (613)
T ss_pred CCCcceEEEEeccCchhhhHHHhhcccccccc--CCccceecchhhhHHHHHHHHhhhHHHHHHHHHHcC-CcccccceE
Confidence 55689999999999999999999999876554 456789999999998888887 89999999999999 999999999
Q ss_pred EEeCCCc-ccccccccceeeeeccccccCccccchhhhhHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHH
Q 001203 308 VFLAPEM-AVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIK 386 (1124)
Q Consensus 308 VfVp~~~-~~~~~~~gagLii~s~~lL~~~~~id~~~~~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~ 386 (1124)
+++|+.. .++|+|- .|+.....+|-..+. ...+|||||||-||||+||..+|.+.||||||++|++..++.
T Consensus 258 lvlPpSFP~gGMENP--cltF~TpTllaGDrs------l~~vIaHEIAHSWtGNlVTN~sWehfWLNEGfTvylErrI~g 329 (613)
T KOG1047|consen 258 LVLPPSFPFGGMENP--CLTFVTPTLLAGDRS------LVDVIAHEIAHSWTGNLVTNASWEHFWLNEGFTVYLERRIVG 329 (613)
T ss_pred EEecCCCCcccccCc--ceeeecchhhcCCcc------hhhHHHHHhhhhhcccccccCccchhhhcccchhhhhhhhhh
Confidence 9998532 2333333 244446667655432 245899999999999999999999999999999999999999
Q ss_pred HHhCChHHHHHHHHHhhhhhh-cccCCCccccCCCCcccCCCCcccccccchhhhhHHHHHHHHHHHhC-hHHHHHHHHH
Q 001203 387 KFLGNNEARYRRYKANCAVCK-ADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQN 464 (1124)
Q Consensus 387 ~~~G~ne~ry~~~~~~~~~~~-~d~~~~~~L~s~~s~~~l~~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG-~e~F~~~L~~ 464 (1124)
.++|.....+.....+...-. .+..+.. ........++.+.++...|+.+-|.||..+|+.||+.+| ++.|...||.
T Consensus 330 ~~~g~~~~~f~a~~gw~~L~~~~d~~g~~-~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll~~Le~~lG~~~~Fd~FLr~ 408 (613)
T KOG1047|consen 330 RLYGEAYRQFEALIGWRELRPSMDLFGET-SEFTKLVVKLENVDPDDAFSQVPYEKGFALLFYLEQLLGDPTRFDPFLRA 408 (613)
T ss_pred hhcchhHHHHHHhcChhhhhhHHHhcCCC-cccchhhhhccCCChHHhhhcCchhhhhHHHHHHHHHhCChhhHHHHHHH
Confidence 999988665543222221100 0111110 000011123334456678999999999999999999999 4789999999
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHH-hcCCCCcC-HHH-HHHHHHcCCCcceEEEE
Q 001203 465 IISRAQGASPVRTLSTKEFRHFANK-VGNLERPF-LKE-FFPRWVGTCGCPVLRMG 517 (1124)
Q Consensus 465 yl~~~~~~~~~~~lst~~F~~l~e~-vs~~~g~d-L~~-Ff~qWv~~~G~P~l~V~ 517 (1124)
|+.+++++ ++.+++|..+.-+ ..+...++ ++. -|+.|++++|.|...-.
T Consensus 409 Yv~kfa~k----sI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p~ 460 (613)
T KOG1047|consen 409 YVHKFAFK----SILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKPN 460 (613)
T ss_pred HHHHhccc----eecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCCC
Confidence 99999998 5999999887643 33211122 233 38999999999975433
No 10
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=98.72 E-value=1.8e-06 Score=100.69 Aligned_cols=223 Identities=14% Similarity=0.152 Sum_probs=141.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCcccccccccceeeee-ccccccCcccc-chh-hhh-HHHHHHH
Q 001203 277 KIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVI-DQA-IDT-SIKLSFA 352 (1124)
Q Consensus 277 ~~~~tl~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gagLii~-s~~lL~~~~~i-d~~-~~~-~~~laHE 352 (1124)
..+...+.++++++-=-+.|| +-||.+|.+++--. -..++||... |+.+.++.... ++. +.. ..+++||
T Consensus 182 d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s------~q~~GGlEH~~St~l~~~r~~~~~~~ky~~~l~llsHE 254 (558)
T COG3975 182 DKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLS------DQIYGGLEHRRSTALIYDRFGFTDQDKYQDLLGLLSHE 254 (558)
T ss_pred cHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEec------CCCCCCceeccccccccccccccchhHHHHHHHHHHHH
Confidence 445556667777777677788 68999988775321 1223378777 55676666333 222 222 5689999
Q ss_pred HHHhhcCcccccCCC-----------CchHHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHhhhhhhcccCCC--cccc
Q 001203 353 LARQWFGVYITPELP-----------NDEWLLDGLAGFLTDSFIKKFL--GNNEARYRRYKANCAVCKADDSGA--TALS 417 (1124)
Q Consensus 353 LAHQWFG~lVt~~~W-----------~D~WLnEGfA~Yl~~l~~~~~~--G~ne~ry~~~~~~~~~~~~d~~~~--~~L~ 417 (1124)
..|-|-+-.|.|..- .-+|+.|||+.|...++.-..- -.++|.--.-+...++.. ..+. .++.
T Consensus 255 yfH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRsgl~~~~~~l~~la~tl~~~~~--~~gRl~~~la 332 (558)
T COG3975 255 YFHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRSGLISLETYLNYLAKTLARYLN--TPGRLRQSLA 332 (558)
T ss_pred HHHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhc--CCceeccccc
Confidence 999999988887642 4589999999999988764431 112221011112222211 1111 1111
Q ss_pred CCCCcccC----CCCcccccccchh--hhhHHHHHHHHHHHh-----ChHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHH
Q 001203 418 SSASCKDL----YGTQCIGIFGKIR--SCKSVAILQMLEKQM-----GSNFFRKILQNIISRAQGASPVRTLSTKEFRHF 486 (1124)
Q Consensus 418 s~~s~~~l----~~~~~~~~f~~i~--Y~Kg~lVL~MLe~~l-----G~e~F~~~L~~yl~~~~~~~~~~~lst~~F~~l 486 (1124)
. ++.+. +..+... -..+. |.||++|--+|+..| |+.++..+|+.+...+... ++..+.++++.+
T Consensus 333 E--sS~~awik~yr~d~ns-~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~--~~~~t~e~v~av 407 (558)
T COG3975 333 E--SSFDAWIKYYRPDENS-PNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRA--ERGYTPEDVQAV 407 (558)
T ss_pred c--cccchhHHhhcccccc-cccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcC--ccCCCHHHHHHH
Confidence 1 11110 1110000 01122 889999998988887 5678999999999887663 446899999999
Q ss_pred HHHhcCCCCcCHHHHHHHHHcCCCcceEEE
Q 001203 487 ANKVGNLERPFLKEFFPRWVGTCGCPVLRM 516 (1124)
Q Consensus 487 ~e~vs~~~g~dL~~Ff~qWv~~~G~P~l~V 516 (1124)
++.+. |.|+..||++.+++.--|.|.-
T Consensus 408 ~~~~t---g~dl~~f~~~~i~~~~~~~l~~ 434 (558)
T COG3975 408 LENVT---GLDLATFFDEYIEGTEPPPLNP 434 (558)
T ss_pred HHhhc---cccHHHHHHHHhhcCCCCChhh
Confidence 99987 4699999999999998887654
No 11
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=98.71 E-value=4e-08 Score=96.30 Aligned_cols=102 Identities=20% Similarity=0.343 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHhhhhhhcccCCCccccCCCCcccC
Q 001203 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDL 425 (1124)
Q Consensus 346 ~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~ry~~~~~~~~~~~~d~~~~~~L~s~~s~~~l 425 (1124)
..+++||++|+|++..+........|++||+|.|++.. .+..+. ......+... ...++ .++
T Consensus 26 ~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~--------~~~~~~--~~~~~~~~~~--~~~~~------~~l 87 (128)
T PF13485_consen 26 DRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGR--------IEDEFD--EDLKQAIESG--SLPPL------EPL 87 (128)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcC--------ccchhH--HHHHHHHHcC--CCCCh------HHH
Confidence 46899999999999999877888899999999999833 111000 0000111111 11111 111
Q ss_pred CC-CcccccccchhhhhHHHHHHHHHHHhChHHHHHHHHHH
Q 001203 426 YG-TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNI 465 (1124)
Q Consensus 426 ~~-~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~y 465 (1124)
.. ......+....|.+|.+++++|+...|++.|.+.|+.|
T Consensus 88 ~~~~~~~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 88 NSSFDFSWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred hccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 10 00122344567999999999999999999999999875
No 12
>PRK09687 putative lyase; Provisional
Probab=96.48 E-value=0.052 Score=61.49 Aligned_cols=63 Identities=24% Similarity=0.187 Sum_probs=29.3
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHhC--CCC-cHhHHHHHHHH-hcCCCchhhHHHHHHHHHHcccccc
Q 001203 658 QMWINQLEKDGDVVAQAQAIAALEAL--PHL-SFNVVNTLNNF-LSDSKAFWRVRIEAAYALANTASEE 722 (1124)
Q Consensus 658 ~m~~~QL~~drDV~aQ~eAi~~L~~~--~~~-s~~~~~~L~~~-l~d~~~Fy~VR~~Aa~aLa~~~~~~ 722 (1124)
+.-+.+|.++.|...|..|+.+|... +.. ...+...|... +.|+ =+.||..|+.+|+.+....
T Consensus 56 ~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~--d~~VR~~A~~aLG~~~~~~ 122 (280)
T PRK09687 56 FRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDK--SACVRASAINATGHRCKKN 122 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCC--CHHHHHHHHHHHhcccccc
Confidence 34444455555555555555555533 211 12233444444 2332 2555555555555554433
No 13
>PRK09687 putative lyase; Provisional
Probab=95.99 E-value=0.32 Score=55.09 Aligned_cols=58 Identities=16% Similarity=0.043 Sum_probs=39.5
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHccccc
Q 001203 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASE 721 (1124)
Q Consensus 659 m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~ 721 (1124)
.....| .|.|...|.+|+.+|..... ..+...+.+.+.|+. -.||..|+.+|+.+..+
T Consensus 27 ~L~~~L-~d~d~~vR~~A~~aL~~~~~--~~~~~~l~~ll~~~d--~~vR~~A~~aLg~lg~~ 84 (280)
T PRK09687 27 ELFRLL-DDHNSLKRISSIRVLQLRGG--QDVFRLAIELCSSKN--PIERDIGADILSQLGMA 84 (280)
T ss_pred HHHHHH-hCCCHHHHHHHHHHHHhcCc--chHHHHHHHHHhCCC--HHHHHHHHHHHHhcCCC
Confidence 344444 67788888888888887643 345566666666653 48888888888887653
No 14
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.11 E-value=0.084 Score=48.16 Aligned_cols=71 Identities=28% Similarity=0.295 Sum_probs=58.8
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHHh
Q 001203 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (1124)
Q Consensus 659 m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~~ 737 (1124)
..+..|..|+|...|.+|++.|++.. +..+...|.+.+.|+ .+.||.+|+.+|+++.+++ ..+.|.+++++
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~--~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~~~~----~~~~L~~~l~~ 73 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELG--DPEAIPALIELLKDE--DPMVRRAAARALGRIGDPE----AIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCT--HHHHHHHHHHHHTSS--SHHHHHHHHHHHHCCHHHH----THHHHHHHHTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHH----HHHHHHHHHcC
Confidence 35677889999999999999999864 456788999999774 7899999999999997654 47788887764
No 15
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=94.51 E-value=1.2 Score=51.90 Aligned_cols=138 Identities=19% Similarity=0.216 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhh--cCcccccC--CCCchHHHHHHHHHHHHHHHHHHh-CCh---HHHHHHHHHhhhhhhcccCCCcccc
Q 001203 346 SIKLSFALARQW--FGVYITPE--LPNDEWLLDGLAGFLTDSFIKKFL-GNN---EARYRRYKANCAVCKADDSGATALS 417 (1124)
Q Consensus 346 ~~~laHELAHQW--FG~lVt~~--~W~D~WLnEGfA~Yl~~l~~~~~~-G~n---e~ry~~~~~~~~~~~~d~~~~~~L~ 417 (1124)
..+||||+-|+= .-..|... .-.|+||+||+|.-+++++-.+.. |.| ..|+..|.. ...... .
T Consensus 140 ~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~i~d~R~~~y~~-------~~~~~~--~ 210 (366)
T PF10460_consen 140 YSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNNIRDSRIPYYNN-------YTSGNY--N 210 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCccccccHHHHhh-------ccccCC--C
Confidence 348999999984 32333333 346999999999999998865542 111 123332221 000000 0
Q ss_pred CCCCcccCCCCcccccccchhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcCCCCcC
Q 001203 418 SSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPF 497 (1124)
Q Consensus 418 s~~s~~~l~~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~~lst~~F~~l~e~vs~~~g~d 497 (1124)
+. ...... .. ..-..|..+.+++.-|.+..|.+.+++.|. +.... -+.+-...+.+.+.. +..
T Consensus 211 ~~--l~~w~~--~g--~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~----~~~~t-----ds~avl~aa~~~~~~--~~s 273 (366)
T PF10460_consen 211 CS--LTAWSS--FG--DSLASYSSSYSFGAYLYRQYGGDFYKKLLT----NSSST-----DSEAVLDAAIKQAGP--GNS 273 (366)
T ss_pred cc--eeecCC--Cc--cccccchhHHHHHHHHHHHcChHHHHHHHh----cCCCC-----cHHHHHHHHHHhhcC--CCC
Confidence 00 000100 00 012348899999999999999887655544 22211 122333444444432 457
Q ss_pred HHHHHHHHHcCC
Q 001203 498 LKEFFPRWVGTC 509 (1124)
Q Consensus 498 L~~Ff~qWv~~~ 509 (1124)
+.++|.+|.-..
T Consensus 274 f~~~l~~w~~A~ 285 (366)
T PF10460_consen 274 FGELLRRWGVAL 285 (366)
T ss_pred HHHHHHHHHHHH
Confidence 999999998776
No 16
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.78 E-value=2.5 Score=55.77 Aligned_cols=106 Identities=21% Similarity=0.108 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHhhCCCcHHHHHHHHHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHH
Q 001203 654 NQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVK 733 (1124)
Q Consensus 654 ~qp~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k 733 (1124)
..|.-.++.++-.|.|..-|..|+..|.+... ..+...|.+.|.|+ ...||..|+.+|+++...... ...|+.
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--~~~~~~L~~aL~D~--d~~VR~~Aa~aL~~l~~~~~~---~~~L~~ 691 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP--PGFGPALVAALGDG--AAAVRRAAAEGLRELVEVLPP---APALRD 691 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc--hhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhccCc---hHHHHH
Confidence 55554455555589999999999999998643 34678899999875 889999999999988532111 245555
Q ss_pred HHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhh
Q 001203 734 FYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLK 791 (1124)
Q Consensus 734 ~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~ 791 (1124)
+++. .+..|+.+...+|+.++..+ + ..|+..|+
T Consensus 692 ~L~~------------------~d~~VR~~A~~aL~~~~~~~---~----~~l~~~L~ 724 (897)
T PRK13800 692 HLGS------------------PDPVVRAAALDVLRALRAGD---A----ALFAAALG 724 (897)
T ss_pred HhcC------------------CCHHHHHHHHHHHHhhccCC---H----HHHHHHhc
Confidence 5542 12368888888888776321 1 24556666
No 17
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=92.16 E-value=0.068 Score=52.64 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhcCcccccCC-----------CCchHHHHHHHHHHHHHHHHHH
Q 001203 347 IKLSFALARQWFGVYITPEL-----------PNDEWLLDGLAGFLTDSFIKKF 388 (1124)
Q Consensus 347 ~~laHELAHQWFG~lVt~~~-----------W~D~WLnEGfA~Yl~~l~~~~~ 388 (1124)
.++|||..|.|-+..+.|.. -+.+|+-||++.|++.+++.+.
T Consensus 6 ~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~Ra 58 (122)
T PF05299_consen 6 GLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVRA 58 (122)
T ss_pred hhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHHc
Confidence 47899999999987777653 3468999999999999887654
No 18
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=91.90 E-value=2.2 Score=56.39 Aligned_cols=185 Identities=23% Similarity=0.193 Sum_probs=106.1
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHHhc
Q 001203 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSR 738 (1124)
Q Consensus 659 m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~~~ 738 (1124)
-+...| .+.|-..|..|+++|....... ...|.+.|.|+.. .||.+|+.+|+++... ..|+.+..
T Consensus 688 ~L~~~L-~~~d~~VR~~A~~aL~~~~~~~---~~~l~~~L~D~d~--~VR~~Av~aL~~~~~~-------~~l~~~l~-- 752 (897)
T PRK13800 688 ALRDHL-GSPDPVVRAAALDVLRALRAGD---AALFAAALGDPDH--RVRIEAVRALVSVDDV-------ESVAGAAT-- 752 (897)
T ss_pred HHHHHh-cCCCHHHHHHHHHHHHhhccCC---HHHHHHHhcCCCH--HHHHHHHHHHhcccCc-------HHHHHHhc--
Confidence 444455 5689999999999998754333 2467788888764 6999999999987432 23444332
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhhchH--HHHHHHHH-------------H
Q 001203 739 RFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKSIL--FLSSLLKR-------------I 803 (1124)
Q Consensus 739 ~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~~~--~~~~~~~e-------------i 803 (1124)
+++ -.|+.+...+|+.+++... .+...|+.++++.. --..++.. +
T Consensus 753 --D~~--------------~~VR~~aa~aL~~~~~~~~----~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l 812 (897)
T PRK13800 753 --DEN--------------REVRIAVAKGLATLGAGGA----PAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAA 812 (897)
T ss_pred --CCC--------------HHHHHHHHHHHHHhccccc----hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHH
Confidence 221 3588999999999876533 23566777777221 11112222 2
Q ss_pred HHHHcccccCCCCCchhhHHHHHHHHHHHHHhcCCCchhhhhhhcccccCcCChHHHHHHHHHHhhccccccCChhHHHH
Q 001203 804 DRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALS 883 (1124)
Q Consensus 804 ~r~l~~D~~~pSy~~~vt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vR~~A~~~l~~~~~~~~~~~~~l~ 883 (1124)
...|.=+ .-.|-.+++++|.++. ..-..+.+..++ . +....||.+|.++|-.+ +|...+..
T Consensus 813 ~~aL~d~------d~~VR~~Aa~aL~~l~----~~~a~~~L~~~L---~--D~~~~VR~~A~~aL~~~----~~~~~a~~ 873 (897)
T PRK13800 813 TAALRAS------AWQVRQGAARALAGAA----ADVAVPALVEAL---T--DPHLDVRKAAVLALTRW----PGDPAARD 873 (897)
T ss_pred HHHhcCC------ChHHHHHHHHHHHhcc----ccchHHHHHHHh---c--CCCHHHHHHHHHHHhcc----CCCHHHHH
Confidence 2222211 2345566777666542 111223333332 2 23468999999999885 23334555
Q ss_pred HHHHHhc-cCCcchh
Q 001203 884 LFIKSVE-EEPSLRG 897 (1124)
Q Consensus 884 ~~~~~~~-~~~~~~~ 897 (1124)
.+...++ .|+.+|.
T Consensus 874 ~L~~al~D~d~~Vr~ 888 (897)
T PRK13800 874 ALTTALTDSDADVRA 888 (897)
T ss_pred HHHHHHhCCCHHHHH
Confidence 5555553 2344444
No 19
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=91.39 E-value=3.4 Score=44.69 Aligned_cols=171 Identities=16% Similarity=0.105 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHhcCCC-CCCCCccEEE--eCCCccccccccc---ceeeeeccccccCccc-cchhhhhHHHHHHHH
Q 001203 281 TVEFFHNAFSHYETYLDAK-FPFGSYKQVF--LAPEMAVSSSTFG---AAMGIFSSQILYDEKV-IDQAIDTSIKLSFAL 353 (1124)
Q Consensus 281 tl~~~~~al~ffee~fG~~-YPf~ky~~Vf--Vp~~~~~~~~~~g---agLii~s~~lL~~~~~-id~~~~~~~~laHEL 353 (1124)
+...+..+..+-.+.|-.+ .+-+..+.|. +. +|.+.-...| ..-|.+|.+.+-.... -+...+...+|.||+
T Consensus 26 a~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~-~~~gVA~t~gd~~~~~I~~S~~~i~~~~~~~~~~~Ei~Gvl~HE~ 104 (205)
T PF04450_consen 26 AEQVLRDASRFVWRLLYQSPADRKPVRSVTLILD-DMDGVAYTSGDDDHKEIHFSARYIAKYPADGDVRDEIIGVLYHEM 104 (205)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcccEEEEEEE-CCCeeEEEecCCCccEEEEeHHHHhhcccccchHHHHHHHHHHHH
Confidence 3444555556665655433 2223344442 22 2322112222 1244456655543221 122345566999999
Q ss_pred HHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHhhhhhhcccCCCccccCCCCcccCCCCccccc
Q 001203 354 ARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGI 433 (1124)
Q Consensus 354 AHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~ry~~~~~~~~~~~~d~~~~~~L~s~~s~~~l~~~~~~~~ 433 (1124)
+|-|=.+--. -.--||.||+|.|+-.. .|-. ..... .+... ..
T Consensus 105 ~H~~Q~~~~~---~~P~~liEGIADyVRl~-----aG~~----------------~~~w~---------~p~~~----~~ 147 (205)
T PF04450_consen 105 VHCWQWDGRG---TAPGGLIEGIADYVRLK-----AGYA----------------PPHWK---------RPGGG----DS 147 (205)
T ss_pred HHHhhcCCCC---CCChhheecHHHHHHHH-----cCCC----------------Ccccc---------CCCCC----CC
Confidence 9976544322 22349999999998321 1110 00000 00000 01
Q ss_pred ccchhhhhHHHHHHHHHH-HhChHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcCCCCcCHHHHHHH
Q 001203 434 FGKIRSCKSVAILQMLEK-QMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPR 504 (1124)
Q Consensus 434 f~~i~Y~Kg~lVL~MLe~-~lG~e~F~~~L~~yl~~~~~~~~~~~lst~~F~~l~e~vs~~~g~dL~~Ff~q 504 (1124)
++ -.|.-.+..|.-||. +.|+ .|-+-|++=+.+..+ +++. +++.+. |++++++|+.
T Consensus 148 wd-~gY~~TA~FL~wle~~~~~~-gfV~~LN~~m~~~~y-------~~~~---~~~~l~---G~~v~~LW~e 204 (205)
T PF04450_consen 148 WD-DGYRTTARFLDWLEDNRYGK-GFVRRLNEAMRRDKY-------SSDD---FWKELL---GKPVDELWAE 204 (205)
T ss_pred cc-cccHHHHHHHHHHHhcccCc-cHHHHHHHHHhhCCC-------CcHh---HHHHHH---CcCHHHHHhh
Confidence 11 237889999999998 6654 466666666655443 1232 333344 4578888765
No 20
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=90.84 E-value=0.14 Score=50.84 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhcCcc---cccCCCCchHHHHHHHHHHHHHHH
Q 001203 347 IKLSFALARQWFGVY---ITPELPNDEWLLDGLAGFLTDSFI 385 (1124)
Q Consensus 347 ~~laHELAHQWFG~l---Vt~~~W~D~WLnEGfA~Yl~~l~~ 385 (1124)
.+++||-+||=.-|. --...|- .|+.||||+|++..-+
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~P-~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADWP-RWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCCc-hHHHHhHHHHcCCCcc
Confidence 368999999976433 2222332 7999999999986554
No 21
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=88.33 E-value=22 Score=40.98 Aligned_cols=94 Identities=30% Similarity=0.317 Sum_probs=74.5
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHH
Q 001203 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (1124)
Q Consensus 657 ~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~ 736 (1124)
.......| .++|..-+..|...|.... +..++..|.+.+.|..+ .||-.|+.+|++...++. ...|++.+.
T Consensus 45 ~~~~~~~l-~~~~~~vr~~aa~~l~~~~--~~~av~~l~~~l~d~~~--~vr~~a~~aLg~~~~~~a----~~~li~~l~ 115 (335)
T COG1413 45 ADELLKLL-EDEDLLVRLSAAVALGELG--SEEAVPLLRELLSDEDP--RVRDAAADALGELGDPEA----VPPLVELLE 115 (335)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHhhhc--hHHHHHHHHHHhcCCCH--HHHHHHHHHHHccCChhH----HHHHHHHHH
Confidence 44444444 6669999999999999864 44577889999999765 999999999999998765 788888887
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCC
Q 001203 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN 776 (1124)
Q Consensus 737 ~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g 776 (1124)
. ++ +++|+.+...|++.+++.+.
T Consensus 116 ~---d~--------------~~~vR~~aa~aL~~~~~~~a 138 (335)
T COG1413 116 N---DE--------------NEGVRAAAARALGKLGDERA 138 (335)
T ss_pred c---CC--------------cHhHHHHHHHHHHhcCchhh
Confidence 4 22 24688999999999998765
No 22
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=84.76 E-value=18 Score=44.49 Aligned_cols=217 Identities=18% Similarity=0.215 Sum_probs=105.9
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhC----CCCcHh-HHHHHHHHhcCCCchhhHHHHHHHHHHcc-cccccccccHHH
Q 001203 657 VQMWINQLEKDGDVVAQAQAIAALEAL----PHLSFN-VVNTLNNFLSDSKAFWRVRIEAAYALANT-ASEETDWAGLLH 730 (1124)
Q Consensus 657 ~~m~~~QL~~drDV~aQ~eAi~~L~~~----~~~s~~-~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~-~~~~~~~~G~~~ 730 (1124)
-..-+.++-.|++-.-|-.|+.++.+. |+.... ....|.+.|.|+. .+|+..|+.+|..+ .++.....=++.
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~--~~V~~~a~~~l~~i~~~~~~~~~~~~~ 192 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKD--PSVVSAALSLLSEIKCNDDSYKSLIPK 192 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSS--HHHHHHHHHHHHHHHCTHHHHTTHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCc--chhHHHHHHHHHHHccCcchhhhhHHH
Confidence 344456666667767777666555533 332222 3556666666543 67777777777766 222110001112
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCCh--HHHHHHHHHHhhc----------------
Q 001203 731 LVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP--REAVEFVLQLLKS---------------- 792 (1124)
Q Consensus 731 L~k~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p--~~v~~fLldll~~---------------- 792 (1124)
+.+...+.- .-+ .-++|..+.+.+..+-..+...+ ..+.+.|+.+|.+
T Consensus 193 ~~~~L~~~l-------~~~-------~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 193 LIRILCQLL-------SDP-------DPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp HHHHHHHHH-------TCC-------SHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcc-------ccc-------chHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 222222110 111 12456655555554432222223 3455666666661
Q ss_pred ---hHHHHHHHHHHHHHHcccccCCCCCchhhHHHHHHHHHHHHHhcCCCchhhhhhhcccccCcCChHHHHHHHHHHhh
Q 001203 793 ---ILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALL 869 (1124)
Q Consensus 793 ---~~~~~~~~~ei~r~l~~D~~~pSy~~~vt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vR~~A~~~l~ 869 (1124)
...+..++.-+-++++ |...-+-..+|++|.++.......+....+ .++ +-.......||..|++.|.
T Consensus 259 ~~~~~~~~~~~~~L~~lL~------s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~-~~~--~l~~~~d~~Ir~~~l~lL~ 329 (526)
T PF01602_consen 259 SPSPELLQKAINPLIKLLS------SSDPNVRYIALDSLSQLAQSNPPAVFNQSL-ILF--FLLYDDDPSIRKKALDLLY 329 (526)
T ss_dssp SSSHHHHHHHHHHHHHHHT------SSSHHHHHHHHHHHHHHCCHCHHHHGTHHH-HHH--HHHCSSSHHHHHHHHHHHH
T ss_pred hcchHHHHhhHHHHHHHhh------cccchhehhHHHHHHHhhcccchhhhhhhh-hhh--eecCCCChhHHHHHHHHHh
Confidence 1223345555556554 333435566777777764321001111111 111 1222334679999999999
Q ss_pred ccccccCChhHHHHHHHHHh-cc-CCcchhhh
Q 001203 870 DLEFHCNGIDSALSLFIKSV-EE-EPSLRGQV 899 (1124)
Q Consensus 870 ~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~~ 899 (1124)
.+.-. .....++.-++.++ +. |+.++..+
T Consensus 330 ~l~~~-~n~~~Il~eL~~~l~~~~d~~~~~~~ 360 (526)
T PF01602_consen 330 KLANE-SNVKEILDELLKYLSELSDPDFRREL 360 (526)
T ss_dssp HH--H-HHHHHHHHHHHHHHHHC--HHHHHHH
T ss_pred hcccc-cchhhHHHHHHHHHHhccchhhhhhH
Confidence 98642 33446788888888 55 66655543
No 23
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=84.36 E-value=9.1 Score=47.01 Aligned_cols=188 Identities=18% Similarity=0.137 Sum_probs=99.4
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhCCCCc--HhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHH
Q 001203 659 MWINQLEKDGDVVAQAQAIAALEALPHLS--FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (1124)
Q Consensus 659 m~~~QL~~drDV~aQ~eAi~~L~~~~~~s--~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~ 736 (1124)
.+...|+ +++-.-|.-|++.|+...+.. ......+.+.+.|+. .-||..||.||.++....++..... ++....
T Consensus 83 ~l~kdl~-~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~--~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~ 158 (526)
T PF01602_consen 83 SLQKDLN-SPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPS--PYVRKKAALALLKIYRKDPDLVEDE-LIPKLK 158 (526)
T ss_dssp HHHHHHC-SSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHH
T ss_pred HHHHhhc-CCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHhccCHHHHHHH-HHHHHh
Confidence 3444443 578899999999999864321 224445777888864 4899999999999875433321111 233333
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhh-ccC-----------------CCChHHHHHHHHHHhh-----ch
Q 001203 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVR-AAD-----------------NKSPREAVEFVLQLLK-----SI 793 (1124)
Q Consensus 737 ~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr-~~~-----------------g~~p~~v~~fLldll~-----~~ 793 (1124)
+...+++ .-|+.+-..++..+| +.+ +..-+-++.-++++|+ +.
T Consensus 159 ~lL~d~~--------------~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~ 224 (526)
T PF01602_consen 159 QLLSDKD--------------PSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP 224 (526)
T ss_dssp HHTTHSS--------------HHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH
T ss_pred hhccCCc--------------chhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh
Confidence 2222221 134555555555551 111 1222222333333333 11
Q ss_pred HHH--HHHHHHHHHHHcccccCCCCCchhhHHHHHHHHHHHHHhcCCCc-hhhhhhhcccccCcCChHHHHHHHHHHhhc
Q 001203 794 LFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS-LDQVVKLIKPFRDFNTIWQVRVEASRALLD 870 (1124)
Q Consensus 794 ~~~--~~~~~ei~r~l~~D~~~pSy~~~vt~~~l~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vR~~A~~~l~~ 870 (1124)
... ..+++.+..+++ |=...|...|.+++..+. ...+ .......+..+.. ..-.++|..|+++|..
T Consensus 225 ~~~~~~~~i~~l~~~l~------s~~~~V~~e~~~~i~~l~----~~~~~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~ 293 (526)
T PF01602_consen 225 EDADKNRIIEPLLNLLQ------SSSPSVVYEAIRLIIKLS----PSPELLQKAINPLIKLLS-SSDPNVRYIALDSLSQ 293 (526)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHS----SSHHHHHHHHHHHHHHHT-SSSHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhh------ccccHHHHHHHHHHHHhh----cchHHHHhhHHHHHHHhh-cccchhehhHHHHHHH
Confidence 222 346666666666 444555667888777642 2222 1111111122222 3346799999999999
Q ss_pred ccccc
Q 001203 871 LEFHC 875 (1124)
Q Consensus 871 ~~~~~ 875 (1124)
+....
T Consensus 294 l~~~~ 298 (526)
T PF01602_consen 294 LAQSN 298 (526)
T ss_dssp HCCHC
T ss_pred hhccc
Confidence 86543
No 24
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=81.80 E-value=58 Score=42.19 Aligned_cols=136 Identities=22% Similarity=0.358 Sum_probs=88.2
Q ss_pred CCCchhhHHHHHHHHHHcccccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCCh
Q 001203 700 DSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP 779 (1124)
Q Consensus 700 d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p 779 (1124)
|+..-|+||-+||++|..+-+.. ...|.++|+ +.=|.-+++.++..-..-
T Consensus 341 DeD~SWkVRRaAaKcl~a~IsSR-----~E~L~~~~q-------------------------~l~p~lI~RfkEREEnVk 390 (1233)
T KOG1824|consen 341 DEDMSWKVRRAAAKCLEAVISSR-----LEMLPDFYQ-------------------------TLGPALISRFKEREENVK 390 (1233)
T ss_pred ccchhHHHHHHHHHHHHHHHhcc-----HHHHHHHHH-------------------------HhCHHHHHHHHHHhhhHH
Confidence 66789999999999999876643 445555555 444666777777666666
Q ss_pred HHHHHHHHHHhh----------------------chHHH----HHHHHHHHHHHcccccCCCCCchhhHHHHHHHHHHHH
Q 001203 780 REAVEFVLQLLK----------------------SILFL----SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIAL 833 (1124)
Q Consensus 780 ~~v~~fLldll~----------------------~~~~~----~~~~~ei~r~l~~D~~~pSy~~~vt~~~l~~l~~l~~ 833 (1124)
.++..-.+++|+ +...+ ..+++.|.|.++ ++=+|+ .++|+.-|..|..
T Consensus 391 ~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr-~ks~kt-----~~~cf~lL~eli~ 464 (1233)
T KOG1824|consen 391 ADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLR-EKSVKT-----RQGCFLLLTELIN 464 (1233)
T ss_pred HHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHh-hccccc-----hhhHHHHHHHHHH
Confidence 777777777777 11122 247888999988 777773 3467777777653
Q ss_pred HhcCCC--chhh-hhhhcccccCcCChHHHHHHHHHHhhcc
Q 001203 834 KLSGFI--SLDQ-VVKLIKPFRDFNTIWQVRVEASRALLDL 871 (1124)
Q Consensus 834 ~~~~~~--~~~~-~~~~~~~~~~~~~~~~vR~~A~~~l~~~ 871 (1124)
.+-|.+ ..+. +-+..+.+.+.......++.|+-.|...
T Consensus 465 ~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~ 505 (1233)
T KOG1824|consen 465 VLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSA 505 (1233)
T ss_pred hCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHH
Confidence 222211 1111 2234455666666678898888777664
No 25
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=81.11 E-value=48 Score=39.79 Aligned_cols=187 Identities=12% Similarity=-0.022 Sum_probs=110.0
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHH
Q 001203 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (1124)
Q Consensus 657 ~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~ 736 (1124)
....+..|..|.|......|+.+|..... ..++..|.++|.|.. -+||.+||.+|+++..+.. ...|++..+
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~~~~~~L~~~L~d~~--~~vr~aaa~ALg~i~~~~a----~~~L~~~L~ 127 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLAQED--ALDLRSVLAVLQAGP--EGLCAGIQAALGWLGGRQA----EPWLEPLLA 127 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhccCC--hHHHHHHHHHhcCCC--HHHHHHHHHHHhcCCchHH----HHHHHHHhc
Confidence 45677788777877777788888886533 235788999998863 4699999999998877654 456776665
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhhch--HHHHH---HHHHHHHH---Hc
Q 001203 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKSI--LFLSS---LLKRIDRL---LQ 808 (1124)
Q Consensus 737 ~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~~--~~~~~---~~~ei~r~---l~ 808 (1124)
. .-| +|+.++..+++..+ .+ ....|+.+|++. ..... ++.+|-+- -.
T Consensus 128 ~-------~~p-----------~vR~aal~al~~r~-~~------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~ 182 (410)
T TIGR02270 128 A-------SEP-----------PGRAIGLAALGAHR-HD------PGPALEAALTHEDALVRAAALRALGELPRRLSEST 182 (410)
T ss_pred C-------CCh-----------HHHHHHHHHHHhhc-cC------hHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHH
Confidence 3 122 37787777777633 21 234566666622 11111 11111100 00
Q ss_pred ccccCCCCCchhhHHHHHHHHHHHHHhcCCCc-hhhhhhhcccccCcCChHHHHHHHHHHhhccccccCChhHHHHHHHH
Q 001203 809 FDRLMPSYNGILTISCIRTLTQIALKLSGFIS-LDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIK 887 (1124)
Q Consensus 809 ~D~~~pSy~~~vt~~~l~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vR~~A~~~l~~~~~~~~~~~~~l~~~~~ 887 (1124)
+-....+.+..|-.+++.++..+ |.-. .+.+ ...|+..|.+...|+++.-++. |...++.++..
T Consensus 183 L~~al~d~~~~VR~aA~~al~~l-----G~~~A~~~l---~~~~~~~g~~~~~~l~~~lal~-------~~~~a~~~L~~ 247 (410)
T TIGR02270 183 LRLYLRDSDPEVRFAALEAGLLA-----GSRLAWGVC---RRFQVLEGGPHRQRLLVLLAVA-------GGPDAQAWLRE 247 (410)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHc-----CCHhHHHHH---HHHHhccCccHHHHHHHHHHhC-------CchhHHHHHHH
Confidence 11336777788888888877654 2211 1111 1225666767666766665555 23467777776
Q ss_pred Hhcc
Q 001203 888 SVEE 891 (1124)
Q Consensus 888 ~~~~ 891 (1124)
.+..
T Consensus 248 ll~d 251 (410)
T TIGR02270 248 LLQA 251 (410)
T ss_pred HhcC
Confidence 6644
No 26
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=80.41 E-value=62 Score=42.06 Aligned_cols=124 Identities=12% Similarity=0.236 Sum_probs=64.0
Q ss_pred ccCceEeecCCCCceEEEecCChhhhHH--------HHHHHHHHHHHHHHHhcCCCC-CCCC-----ccEEEeCCCcccc
Q 001203 252 VAPFEVLPDHHQSLMSHICLPANVSKIH--------NTVEFFHNAFSHYETYLDAKF-PFGS-----YKQVFLAPEMAVS 317 (1124)
Q Consensus 252 VG~F~~~~~~~~~~v~~y~~P~~~~~~~--------~tl~~~~~al~ffee~fG~~Y-Pf~k-----y~~VfVp~~~~~~ 317 (1124)
-++|..++. ..|.+..+|.+.+.+. ...++=..++++|.++.|..+ |-.. -+.-|+- +
T Consensus 134 ~~~fa~ve~---~~i~lLVP~~Dk~~l~~~~~~~l~~L~~~Y~~i~~~Yd~l~Gl~~~~~~~~~~n~~~kYF~K-----A 205 (775)
T PF03272_consen 134 DSSFALVEL---DYIQLLVPPADKPNLNNKDFKSLDELIDFYNDIFKFYDDLTGLSDDPSDPVDKNFNNKYFAK-----A 205 (775)
T ss_pred CCceEEEEC---CEEEEEeCcchHHHHhhhcccCHHHHHHHHHHHHHHHHhhhCCCCCCCcccccccccceEEE-----e
Confidence 345555553 4577788887766555 445666788888888888533 2211 1122332 1
Q ss_pred cccccceeeeeccccccCcc-ccchhh---hhHHHHHHHHHHhhcCcccccC-CCCchHHHHHHHHHHHHHHH
Q 001203 318 SSTFGAAMGIFSSQILYDEK-VIDQAI---DTSIKLSFALARQWFGVYITPE-LPNDEWLLDGLAGFLTDSFI 385 (1124)
Q Consensus 318 ~~~~gagLii~s~~lL~~~~-~id~~~---~~~~~laHELAHQWFG~lVt~~-~W~D~WLnEGfA~Yl~~l~~ 385 (1124)
+ ..|+|-..|+....-... ....-. .+-..+-|||+|-+=|.++... .+.+.| |-=+|.++++.++
T Consensus 206 D-~~G~G~AYY~~~w~a~ss~s~~~~L~~~~~nW~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~ 276 (775)
T PF03272_consen 206 D-KSGPGAAYYGSNWTAQSSSSLSFYLNPSPTNWGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYM 276 (775)
T ss_pred c-CCCCCCccccccceecCchhHHHHhCCCCCCchhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhc
Confidence 1 123344444433222111 111001 1123678999999988887433 344444 3344555554443
No 27
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=80.34 E-value=4.2 Score=36.77 Aligned_cols=55 Identities=31% Similarity=0.264 Sum_probs=44.2
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHH
Q 001203 658 QMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALA 716 (1124)
Q Consensus 658 ~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa 716 (1124)
......| +|+|..-|..|+.+|++.. +..+...|.+.+.|+. =..||.+|+.+||
T Consensus 34 ~~L~~~l-~d~~~~vr~~a~~aL~~i~--~~~~~~~L~~~l~~~~-~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 34 PALIELL-KDEDPMVRRAAARALGRIG--DPEAIPALIKLLQDDD-DEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHH-TSSSHHHHHHHHHHHHCCH--HHHTHHHHHHHHTC-S-SHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHcCCC-cHHHHHHHHhhcC
Confidence 3444555 8999999999999999874 4567789999998864 5889999999996
No 28
>PTZ00429 beta-adaptin; Provisional
Probab=77.04 E-value=2e+02 Score=37.36 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=41.4
Q ss_pred HHHHHHhh---CCCcHHHHHHHHHHHhCCCCcH--hHHHHHHHHhcCCCchhhHHHHHHHHHHccc
Q 001203 659 MWINQLEK---DGDVVAQAQAIAALEALPHLSF--NVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (1124)
Q Consensus 659 m~~~QL~~---drDV~aQ~eAi~~L~~~~~~s~--~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~ 719 (1124)
|-++.|++ |++-.-|--|++.|......+. .+...+.++|.|.. =-||..||.|++|+-
T Consensus 105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~--pYVRKtAalai~Kly 168 (746)
T PTZ00429 105 LAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPD--PYVRKTAAMGLGKLF 168 (746)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHH
Confidence 44555553 4677888889999987654321 24556788888865 459999999999964
No 29
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=75.67 E-value=2.5 Score=30.63 Aligned_cols=27 Identities=41% Similarity=0.421 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHcccccccccccHHHHHHHH
Q 001203 705 WRVRIEAAYALANTASEETDWAGLLHLVKFY 735 (1124)
Q Consensus 705 y~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f 735 (1124)
|.||.+||.+|+++.+++. ...|+++.
T Consensus 1 ~~vR~~aa~aLg~~~~~~a----~~~L~~~l 27 (30)
T smart00567 1 PLVRHEAAFALGQLGDEEA----VPALIKAL 27 (30)
T ss_pred CHHHHHHHHHHHHcCCHhH----HHHHHHHh
Confidence 5789999999999876653 56666554
No 30
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=75.57 E-value=3.4 Score=29.51 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcccccccccccHHHHHHHHH
Q 001203 707 VRIEAAYALANTASEETDWAGLLHLVKFYK 736 (1124)
Q Consensus 707 VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~ 736 (1124)
||.+||.+|+++..++. ++.|+++.+
T Consensus 1 VR~~Aa~aLg~igd~~a----i~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRA----IPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHHH----HHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHH----HHHHHHHhc
Confidence 79999999999998654 778877654
No 31
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=65.13 E-value=86 Score=35.18 Aligned_cols=71 Identities=25% Similarity=0.179 Sum_probs=51.0
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHH
Q 001203 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFY 735 (1124)
Q Consensus 659 m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f 735 (1124)
-|+++--.|.....-.|+.-.|.+... ..++.+|...|.|+.-==-||-|||+||+.+...+. +..|.|+.
T Consensus 39 ~~i~ka~~d~s~llkhe~ay~LgQ~~~--~~Av~~l~~vl~desq~pmvRhEAaealga~~~~~~----~~~l~k~~ 109 (289)
T KOG0567|consen 39 KAITKAFIDDSALLKHELAYVLGQMQD--EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDPES----LEILTKYI 109 (289)
T ss_pred HHHHHhcccchhhhccchhhhhhhhcc--chhhHHHHHHhcccccchHHHHHHHHHHHhhcchhh----HHHHHHHh
Confidence 455555454445555566677776543 246789999999999899999999999999885443 56676666
No 32
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=63.88 E-value=18 Score=29.83 Aligned_cols=44 Identities=32% Similarity=0.335 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCC--------CcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcc
Q 001203 673 QAQAIAALEALPH--------LSFNVVNTLNNFLSDSKAFWRVRIEAAYALANT 718 (1124)
Q Consensus 673 Q~eAi~~L~~~~~--------~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~ 718 (1124)
|..|+.+|+.... ....+...|...|.|... .||..|+.||+++
T Consensus 4 R~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred HHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 4566667764321 112356678888988766 9999999999864
No 33
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=63.51 E-value=9.1 Score=28.06 Aligned_cols=26 Identities=35% Similarity=0.253 Sum_probs=20.7
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHccc
Q 001203 692 NTLNNFLSDSKAFWRVRIEAAYALANTA 719 (1124)
Q Consensus 692 ~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~ 719 (1124)
..|.+.+.|+ -|.||..|+.+|+.++
T Consensus 3 p~l~~~l~D~--~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 3 PILLQLLNDP--SPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHT-S--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC--CHHHHHHHHHHHHHHH
Confidence 3566777885 8999999999999875
No 34
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=63.41 E-value=12 Score=41.60 Aligned_cols=84 Identities=25% Similarity=0.245 Sum_probs=56.5
Q ss_pred CcHHHHHHHHHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHHhcCCCCCCCCCC
Q 001203 669 DVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPR 748 (1124)
Q Consensus 669 DV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~~~~~~~~~~ipk 748 (1124)
.-.-|.|+.--|++.. |..++-.|.+.|.|+.----||.|||+||+.+++++. +..|.++-. |+. .
T Consensus 200 SalfrhEvAfVfGQl~--s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~----~~vL~e~~~----D~~-~--- 265 (289)
T KOG0567|consen 200 SALFRHEVAFVFGQLQ--SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC----VEVLKEYLG----DEE-R--- 265 (289)
T ss_pred hHHHHHHHHHHHhhcc--chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH----HHHHHHHcC----CcH-H---
Confidence 3445667777777653 3345667888889988888999999999999999875 444433322 111 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhccCC
Q 001203 749 PNDFRDFSEYFVLEAIPHAVAMVRAADN 776 (1124)
Q Consensus 749 ~NdFsd~~~Yfvqkaip~ala~vr~~~g 776 (1124)
.|.+....|+.+.--.+|
T Consensus 266 ----------vv~esc~valdm~eyens 283 (289)
T KOG0567|consen 266 ----------VVRESCEVALDMLEYENS 283 (289)
T ss_pred ----------HHHHHHHHHHHHHHHhcc
Confidence 356777777777655554
No 35
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=60.34 E-value=29 Score=37.17 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHhhcCcccc----cCCCCchHHHHHHHHHHHHHHH
Q 001203 345 TSIKLSFALARQWFGVYIT----PELPNDEWLLDGLAGFLTDSFI 385 (1124)
Q Consensus 345 ~~~~laHELAHQWFG~lVt----~~~W~D~WLnEGfA~Yl~~l~~ 385 (1124)
...++|||+.|-+--..+. ..+--|.-+.||+|.|++....
T Consensus 65 l~~~iaHE~hH~~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~ 109 (195)
T PF10026_consen 65 LPALIAHEYHHNCRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELY 109 (195)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHc
Confidence 3458999999996433332 1223356789999999876543
No 36
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=59.39 E-value=1.8e+02 Score=36.36 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=32.0
Q ss_pred HHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHccccccccc
Q 001203 678 AALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW 725 (1124)
Q Consensus 678 ~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~ 725 (1124)
++++.+|+.+..+.+++.+..+|+. -.||++|.++|..+......|
T Consensus 48 kffk~FP~l~~~Ai~a~~DLcEDed--~~iR~~aik~lp~~ck~~~~~ 93 (556)
T PF05918_consen 48 KFFKHFPDLQEEAINAQLDLCEDED--VQIRKQAIKGLPQLCKDNPEH 93 (556)
T ss_dssp HHHCC-GGGHHHHHHHHHHHHT-SS--HHHHHHHHHHGGGG--T--T-
T ss_pred HHHhhChhhHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHhHHHH
Confidence 5666778888788899999999975 569999999999876543333
No 37
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=59.17 E-value=4.4 Score=52.52 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=80.2
Q ss_pred ccccchhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcC-----------CCCcCHHH
Q 001203 432 GIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGN-----------LERPFLKE 500 (1124)
Q Consensus 432 ~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~~lst~~F~~l~e~vs~-----------~~g~dL~~ 500 (1124)
+.|..-+-.|+.++.+|+++++|.+.|.+.+++.+...... ....|...+-...| ..|++++-
T Consensus 443 ~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~~------~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~ 516 (1180)
T KOG1932|consen 443 GSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASKM------LLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEM 516 (1180)
T ss_pred hhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhh------HHHHHHHHHHhccCCeeEEEEEEEeeccccccH
Confidence 34555556799999999999999999999999999876432 23333333322222 24779999
Q ss_pred HHHHHHcCCCcceEEEEEEEeccccEEEEEEEeeccCC
Q 001203 501 FFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVK 538 (1124)
Q Consensus 501 Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~ 538 (1124)
+++|||.++|+..+.|...||++++.++.+++|..++.
T Consensus 517 ~i~Q~v~~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g 554 (1180)
T KOG1932|consen 517 GIDQWVRTGGHAPFSVFSDFNRKRNALEHEIKQDYTAG 554 (1180)
T ss_pred HHHHHhhhccccceeeecccchhhhhhhhhccccccCC
Confidence 99999999999999999999999999999999987654
No 38
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.55 E-value=3.2e+02 Score=34.51 Aligned_cols=57 Identities=28% Similarity=0.258 Sum_probs=39.7
Q ss_pred HHHhhCCCcHHHHHHHHHHHhCC---CCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccc
Q 001203 662 NQLEKDGDVVAQAQAIAALEALP---HLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1124)
Q Consensus 662 ~QL~~drDV~aQ~eAi~~L~~~~---~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~ 720 (1124)
--|.+|.|...+-.|+++|-... ..+....+-..+.+.|. +=-||.+|.+.+.-+++
T Consensus 204 ~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~--~e~VR~aAvqlv~v~gn 263 (823)
T KOG2259|consen 204 IYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDD--YEDVRKAAVQLVSVWGN 263 (823)
T ss_pred HHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHh
Confidence 45789999998888888755432 22333444456667774 88999999988876665
No 39
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=56.99 E-value=1.1e+02 Score=38.25 Aligned_cols=88 Identities=16% Similarity=0.162 Sum_probs=54.3
Q ss_pred HHHHHHHHHcccccCCCCCchhhHHHHHHHHHHHHHhcCCCchhhhhhhcccccCcCChHHHHHHHHHHhhccccccCCh
Q 001203 799 LLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI 878 (1124)
Q Consensus 799 ~~~ei~r~l~~D~~~pSy~~~vt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vR~~A~~~l~~~~~~~~~~ 878 (1124)
.+..+..++.-|.-.|. -+-++|+.+|.+++. ..|......++.-|.+.....+||++|+-.|++- .+.
T Consensus 478 ~i~~l~~~l~~~~~~~~---~iR~~Av~Alr~~a~----~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t---~P~- 546 (574)
T smart00638 478 SIKVLEPYLEGAEPLST---FIRLAAILALRNLAK----RDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMET---KPS- 546 (574)
T ss_pred HHHHHHHhcCCCCCCCH---HHHHHHHHHHHHHHH----hCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhc---CCC-
Confidence 45566666653433333 345667777776642 1233222223444666777789999999999983 132
Q ss_pred hHHHHHHHHHhccCCcchh
Q 001203 879 DSALSLFIKSVEEEPSLRG 897 (1124)
Q Consensus 879 ~~~l~~~~~~~~~~~~~~~ 897 (1124)
...|+-+...+..||+.-.
T Consensus 547 ~~~l~~ia~~l~~E~~~QV 565 (574)
T smart00638 547 VALLQRIAELLNKEPNLQV 565 (574)
T ss_pred HHHHHHHHHHHhhcCcHHH
Confidence 2668888888888887443
No 40
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=55.31 E-value=16 Score=42.21 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHH
Q 001203 344 DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (1124)
Q Consensus 344 ~~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~ 388 (1124)
+...+|-||||||=+.. -+|.=+||+||++.+..-.++.
T Consensus 164 ~LA~LIfHELaHq~~Yv------~~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 164 ELARLIFHELAHQTLYV------KGDTAFNESFATFVEREGARRW 202 (337)
T ss_pred HHHHHHHHHHhhceeec------CCCchhhHHHHHHHHHHHHHHH
Confidence 34568999999994432 2577899999999987665543
No 41
>PTZ00429 beta-adaptin; Provisional
Probab=50.91 E-value=3e+02 Score=35.85 Aligned_cols=206 Identities=15% Similarity=0.212 Sum_probs=106.7
Q ss_pred CCCcHHHHHHHHHHHhCCCCcHh-HHHHHH---HHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHHhcCCCC
Q 001203 667 DGDVVAQAQAIAALEALPHLSFN-VVNTLN---NFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDE 742 (1124)
Q Consensus 667 drDV~aQ~eAi~~L~~~~~~s~~-~~~~L~---~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~~~~~~~ 742 (1124)
..+-..|+-+++.+...-...+. ...-+. -...|+ -| ||.++...|.+++++++ ...+++-++++- .
T Consensus 308 ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp--~y-IK~~KLeIL~~Lane~N----v~~IL~EL~eYa--~ 378 (746)
T PTZ00429 308 RRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDP--PF-VKLEKLRLLLKLVTPSV----APEILKELAEYA--S 378 (746)
T ss_pred CCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCc--HH-HHHHHHHHHHHHcCccc----HHHHHHHHHHHh--h
Confidence 35777888777666432111111 111111 112443 34 99999999999999875 566666666521 1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhhc-hHHHHHHHHHHHHHHcccccCCCCCchhh
Q 001203 743 NIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKS-ILFLSSLLKRIDRLLQFDRLMPSYNGILT 821 (1124)
Q Consensus 743 ~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~-~~~~~~~~~ei~r~l~~D~~~pSy~~~vt 821 (1124)
+ .| . =|. +..++||+.+=-.-...-..+.++|+++|.+ ..+...++.-+..+++. +|... ++.
T Consensus 379 d------~D---~--ef~-r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~Ilrk---yP~~~-il~ 442 (746)
T PTZ00429 379 G------VD---M--VFV-VEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRK---YPELL-MLD 442 (746)
T ss_pred c------CC---H--HHH-HHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH---CccHH-HHH
Confidence 1 11 1 133 4455888887543334556788899999983 23444433333333332 33321 221
Q ss_pred HHHH----------HHHHH---HHHHhcCCCchh--hhhhhcccccCcCChHHHHHHHHHHhhccccccCC-hhHHHHHH
Q 001203 822 ISCI----------RTLTQ---IALKLSGFISLD--QVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNG-IDSALSLF 885 (1124)
Q Consensus 822 ~~~l----------~~l~~---l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vR~~A~~~l~~~~~~~~~-~~~~l~~~ 885 (1124)
.-|- ++.+. +--..+..|+.. .+..++..|.. ....||++.+.+.+.+.....+ ....+..+
T Consensus 443 ~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~--E~~~VqlqlLta~vKlfl~~p~~~~~~l~~v 520 (746)
T PTZ00429 443 TLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDIIQRFIDTIME--HEQRVQLAILSAAVKMFLRDPQGMEPQLNRV 520 (746)
T ss_pred HHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhcc--CCHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1110 01111 000112233322 23344444443 2468999999999988766553 23446656
Q ss_pred HHHh-c--cCCcchhhh
Q 001203 886 IKSV-E--EEPSLRGQV 899 (1124)
Q Consensus 886 ~~~~-~--~~~~~~~~~ 899 (1124)
|..+ + .||++|.|.
T Consensus 521 L~~~t~~~~d~DVRDRA 537 (746)
T PTZ00429 521 LETVTTHSDDPDVRDRA 537 (746)
T ss_pred HHHHHhcCCChhHHHHH
Confidence 6444 3 357888876
No 42
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.15 E-value=5.7e+02 Score=34.37 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=51.4
Q ss_pred CCHHHHHHHHhhCCCcHHHHHHHHHHHhCCCCcHh--------HHHHHHHHhcCCCchhhHHHHHHHHHHccccc
Q 001203 655 QPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFN--------VVNTLNNFLSDSKAFWRVRIEAAYALANTASE 721 (1124)
Q Consensus 655 qp~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~--------~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~ 721 (1124)
-|-+.|+.++-+..|.--|..|+.+|+-...++.. +..+....|.|+ -=|||.+|+.|++++++.
T Consensus 347 p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp--hprVr~AA~naigQ~std 419 (1075)
T KOG2171|consen 347 PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP--HPRVRYAALNAIGQMSTD 419 (1075)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHhhhhh
Confidence 47899999999999999999999888854333222 445566667775 679999999999999976
No 43
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=49.16 E-value=36 Score=42.98 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=47.8
Q ss_pred HHHHHHHHHcccccCCCCCchhhHHHHHHHHHHHHHhcCCCchhhhhhhcccccCcCChHHHHHHHHHHhhccccccCCh
Q 001203 799 LLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI 878 (1124)
Q Consensus 799 ~~~ei~r~l~~D~~~pSy~~~vt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vR~~A~~~l~~~~~~~~~~ 878 (1124)
.+..+..++.-+. ..-..+-++|+.+|+++ ....|......++.-|.+.....+||+||+-.|+.- .+..
T Consensus 522 ~i~~l~~~i~~~~---~~~~~~R~~Ai~Alr~~----~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~ 591 (618)
T PF01347_consen 522 SIPVLLPYIEGKE---EVPHFIRVAAIQALRRL----AKHCPEKVREILLPIFMNTTEDPEVRIAAYLILMRC---NPSP 591 (618)
T ss_dssp GHHHHHTTSTTSS----S-HHHHHHHHHTTTTG----GGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT------H
T ss_pred hhHHHHhHhhhcc---ccchHHHHHHHHHHHHH----hhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH
Confidence 4555555555444 33345666777777764 233443222223344566677788999999888882 1322
Q ss_pred hHHHHHHHHHhccCCcchh
Q 001203 879 DSALSLFIKSVEEEPSLRG 897 (1124)
Q Consensus 879 ~~~l~~~~~~~~~~~~~~~ 897 (1124)
..|+-+...+..||+.-.
T Consensus 592 -~~l~~i~~~l~~E~~~QV 609 (618)
T PF01347_consen 592 -SVLQRIAQSLWNEPSNQV 609 (618)
T ss_dssp -HHHHHHHHHHTT-S-HHH
T ss_pred -HHHHHHHHHHhhCchHHH
Confidence 667778888888887443
No 44
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=48.22 E-value=1.2e+02 Score=40.69 Aligned_cols=165 Identities=19% Similarity=0.229 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhhccCCCChHHHHHHHHHHhh---------chHHHHHHHHHHHHHHcccccCCCCCchhhHHHHHHHHH
Q 001203 760 VLEAIPHAVAMVRAADNKSPREAVEFVLQLLK---------SILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQ 830 (1124)
Q Consensus 760 vqkaip~ala~vr~~~g~~p~~v~~fLldll~---------~~~~~~~~~~ei~r~l~~D~~~pSy~~~vt~~~l~~l~~ 830 (1124)
|++-+|=-+...+|..-..-..+.+-|.++|- ...|.+=++=-|.++++ |. .++|-.+...+||-.|++
T Consensus 460 LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~-d~-~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 460 LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLN-DS-SAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhc-cC-ccceehhhHHhhHHHHHH
Confidence 44555555555555544444555555555555 12344445555665554 33 777777888888888877
Q ss_pred HHHHhcCCCchhhhhhhcccccCcCChHHHHHHHHHHhhcc-ccc-cCChh--HH----HHHHHHHhccCCcchhhhhHH
Q 001203 831 IALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDL-EFH-CNGID--SA----LSLFIKSVEEEPSLRGQVKLG 902 (1124)
Q Consensus 831 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vR~~A~~~l~~~-~~~-~~~~~--~~----l~~~~~~~~~~~~~~~~~~l~ 902 (1124)
.|.++. -+ +. ..|.+.+.--..- +.. ..+.+ .+ ++-....+.+||.+.++--|+
T Consensus 538 tA~rFl---e~----------~q-----~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Ll 599 (1431)
T KOG1240|consen 538 TAYRFL---EL----------TQ-----ELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALL 599 (1431)
T ss_pred HHHHHH---HH----------HH-----HHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 665331 11 00 1111111000000 000 00000 11 222233345566655554467
Q ss_pred HHHhhhhhhccCCCCCCCCChHHHHHHHHHHhccccccchhhhhhHHHHH
Q 001203 903 IHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGIL 952 (1124)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~lr~~~~~~~ 952 (1124)
.-+..+|.|.|+..+ |+--|.-++..|+. .|++||+..|+-|
T Consensus 600 e~i~~LC~FFGk~ks----ND~iLshLiTfLND----kDw~LR~aFfdsI 641 (1431)
T KOG1240|consen 600 ESIIPLCVFFGKEKS----NDVILSHLITFLND----KDWRLRGAFFDSI 641 (1431)
T ss_pred HHHHHHHHHhhhccc----ccchHHHHHHHhcC----ccHHHHHHHHhhc
Confidence 779999999886643 44455556666655 3999999988764
No 45
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=48.22 E-value=18 Score=39.94 Aligned_cols=37 Identities=24% Similarity=0.196 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHH
Q 001203 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (1124)
Q Consensus 346 ~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~ 388 (1124)
..+|-||||||=|... +|.=+||+||++.+-.-+++.
T Consensus 198 A~LIFHELAHQk~Y~~------~DtAFNEsFAtaVEt~Gvr~W 234 (376)
T COG4324 198 ASLIFHELAHQKIYVN------NDTAFNESFATAVETSGVRKW 234 (376)
T ss_pred HHHHHHHHhhheEeec------CcchHhHHHHHHHHHHhHHHH
Confidence 3479999999976543 577899999999987655543
No 46
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=43.15 E-value=6.4e+02 Score=29.96 Aligned_cols=39 Identities=10% Similarity=0.090 Sum_probs=27.2
Q ss_pred CCcEEEEEccCCCHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 001203 644 EMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (1124)
Q Consensus 644 d~ewl~~v~~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~ 682 (1124)
+|-=--+++.++++..+...+++|.|-..|-||.+.|..
T Consensus 74 gFSAPV~l~~~~s~~eL~~L~~~D~D~FnRWdA~Q~L~~ 112 (367)
T PF11940_consen 74 GFSAPVKLEYDYSDEELAFLAAHDSDPFNRWDAAQTLAT 112 (367)
T ss_dssp TG-SSSEEE----HHHHHHHHHH-SSHHHHHHHHHHHHH
T ss_pred CcccceEecCCCCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 333334556678999999999999999999999998874
No 47
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=41.72 E-value=7.4e+02 Score=30.28 Aligned_cols=172 Identities=16% Similarity=0.215 Sum_probs=85.7
Q ss_pred ChHHHHHHHHHHhh------chHHHHHHHHHHHHHHcccccCCCCCchhhHHHHHHHHHHHHHhcCCCchhhhhhhcccc
Q 001203 778 SPREAVEFVLQLLK------SILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPF 851 (1124)
Q Consensus 778 ~p~~v~~fLldll~------~~~~~~~~~~ei~r~l~~D~~~pSy~~~vt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~ 851 (1124)
...+..+|+.|++| +...+..++..+-.. .-..|-...| .+||+.+--+ -..|.+|.+.+..++.-.
T Consensus 150 ~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~i----C~~Ts~~~di-~~~L~vldai--i~y~~iP~~sl~~~i~vL 222 (464)
T PF11864_consen 150 NLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTI----CKSTSSEDDI-EACLSVLDAI--ITYGDIPSESLSPCIEVL 222 (464)
T ss_pred hHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH----HhccCcHHHH-HHHHHHHHHH--HHcCcCChHHHHHHHHHH
Confidence 45678889999999 344555555554322 2233333444 5777766554 337899987543333222
Q ss_pred cCcCChHHHHHHHHHHhhccccccCChhHHHHHHHHHhc-cCCcchhhhhH---HHHHhhhhhhccCCCCCCCCChHH--
Q 001203 852 RDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVE-EEPSLRGQVKL---GIHAMRICQIKGGSDSNHEVDTVT-- 925 (1124)
Q Consensus 852 ~~~~~~~~vR~~A~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~l~~~~-- 925 (1124)
..--+.....-.|++++=-|..-..| ..++..+.+.+. .++..+....+ .+..++++....+.+.-..|....
T Consensus 223 Csi~~~~~l~~~~w~~m~nL~~S~~g-~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~ 301 (464)
T PF11864_consen 223 CSIVNSVSLCKPSWRTMRNLLKSHLG-HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSS 301 (464)
T ss_pred hhHhcccccchhHHHHHHHHHcCccH-HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHH
Confidence 22112224455566655555322233 367777888883 34332111112 223344444333221112333322
Q ss_pred HHH-HHHHHhccccccchhhhhhHHHHHHHhh-cCCcc
Q 001203 926 LVA-LLNLLESRIAFNNVFLRHHLFGILQILA-GRAPT 961 (1124)
Q Consensus 926 l~~-~~~~~~~~~~~~~~~lr~~~~~~~~~l~-~~~~~ 961 (1124)
+.. +...+. .++.++=+.+..+++.|. |.|.-
T Consensus 302 vl~sl~~al~----~~~~~v~~eIl~~i~~ll~~~~~~ 335 (464)
T PF11864_consen 302 VLPSLLNALK----SNSPRVDYEILLLINRLLDGKYGR 335 (464)
T ss_pred HHHHHHHHHh----CCCCeehHHHHHHHHHHHhHhhhh
Confidence 333 333333 356677777777777777 55543
No 48
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=41.12 E-value=13 Score=44.38 Aligned_cols=73 Identities=25% Similarity=0.234 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHH----HHHHH
Q 001203 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFV----LEAIP 765 (1124)
Q Consensus 690 ~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~~~~~~~~~~ipk~NdFsd~~~Yfv----qkaip 765 (1124)
+-++|+..+.|. .=++||+.||-||+.-+..+....-+..+.+..- ..+.+.|+|-+|.+|-- ++.||
T Consensus 574 ~F~~L~~Lv~~~-~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv-------~aLi~s~~~v~f~eY~~~Dsl~~q~c 645 (728)
T KOG4535|consen 574 AFNALTSLVTSC-KNFKVRIRAAAALSVPGKREQYGDQYALSWNALV-------TALQKSEDTIDFLEYKYCDSLRTQIC 645 (728)
T ss_pred HHHHHHHHHHHh-ccceEeehhhhhhcCCCCcccchhHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777764 4689999999999999887643322222221111 12447899999999964 44444
Q ss_pred HHHHH
Q 001203 766 HAVAM 770 (1124)
Q Consensus 766 ~ala~ 770 (1124)
.|++.
T Consensus 646 ~av~h 650 (728)
T KOG4535|consen 646 QALIH 650 (728)
T ss_pred HHHHH
Confidence 44443
No 49
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=39.75 E-value=48 Score=35.75 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHH
Q 001203 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (1124)
Q Consensus 346 ~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~ 388 (1124)
-.++|||+.|-|.-. ..-.--+.++-||+...++++|++..
T Consensus 94 gsiLAHE~mHa~Lrl--~g~~~L~~~vEEGiCqvla~~wL~~~ 134 (212)
T PF12315_consen 94 GSILAHELMHAWLRL--NGFPNLSPEVEEGICQVLAYLWLESE 134 (212)
T ss_pred hhHHHHHHHHHHhcc--cCCCCCChHHHHHHHHHHHHHHHhhh
Confidence 347999999999722 22223367999999999999998753
No 50
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=39.45 E-value=1.3e+02 Score=34.53 Aligned_cols=72 Identities=29% Similarity=0.279 Sum_probs=35.2
Q ss_pred EEEccCCCHHHHHHHHhhCCCcHHHHHHHHHHHhCCCCcHhHHHHHHHHhcCCC----------chhhHHHHHHHHHHcc
Q 001203 649 AEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSK----------AFWRVRIEAAYALANT 718 (1124)
Q Consensus 649 ~~v~~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~----------~Fy~VR~~Aa~aLa~~ 718 (1124)
..+...+--.-.+..|+.|.+-..+..|+.+|.+... ...+.-|...+.|+. ..+.+|..|+.+|+++
T Consensus 99 g~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~--~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~ 176 (335)
T COG1413 99 GELGDPEAVPPLVELLENDENEGVRAAAARALGKLGD--ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL 176 (335)
T ss_pred HccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc--hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc
Confidence 3333333344444555545555555555555555422 223344444444433 4455555555555555
Q ss_pred cccc
Q 001203 719 ASEE 722 (1124)
Q Consensus 719 ~~~~ 722 (1124)
..+.
T Consensus 177 ~~~~ 180 (335)
T COG1413 177 GDPE 180 (335)
T ss_pred CChh
Confidence 5443
No 51
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=38.71 E-value=35 Score=34.77 Aligned_cols=15 Identities=13% Similarity=-0.064 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHhhcC
Q 001203 345 TSIKLSFALARQWFG 359 (1124)
Q Consensus 345 ~~~~laHELAHQWFG 359 (1124)
...+|.|||||.|..
T Consensus 59 l~~~l~HEm~H~~~~ 73 (146)
T smart00731 59 LRETLLHELCHAALY 73 (146)
T ss_pred HHhhHHHHHHHHHHH
Confidence 345899999999975
No 52
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.46 E-value=94 Score=39.20 Aligned_cols=139 Identities=21% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHccc-ccccccccHHHHHHHHHhcCCCCC--------CCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCC
Q 001203 707 VRIEAAYALANTA-SEETDWAGLLHLVKFYKSRRFDEN--------IGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK 777 (1124)
Q Consensus 707 VR~~Aa~aLa~~~-~~~~~~~G~~~L~k~f~~~~~~~~--------~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~ 777 (1124)
||++|..||+++. .+...-.-...+.++--+ -||+ ++|--.| +..|-.+.+.||.+|.
T Consensus 142 VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liq--nDpS~EVRRaaLsnI~vdn-----------sTlp~IveRarDV~~a 208 (892)
T KOG2025|consen 142 VRIQAVLALSRLQGDPKDEECPVVNLLKDLIQ--NDPSDEVRRAALSNISVDN-----------STLPCIVERARDVSGA 208 (892)
T ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh--cCCcHHHHHHHHHhhccCc-----------ccchhHHHHhhhhhHH
Q ss_pred ChHHHHHHHHHHhhchHHHHHHHHHHHHHHcccccCCCCCchhhHHHHHHHHHHHHHhcCCCchhh--hhhhcccccCcC
Q 001203 778 SPREAVEFVLQLLKSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQ--VVKLIKPFRDFN 855 (1124)
Q Consensus 778 ~p~~v~~fLldll~~~~~~~~~~~ei~r~l~~D~~~pSy~~~vt~~~l~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~ 855 (1124)
-.+=|-+-+|.-+ +..+++ ++ .|.+-|+.=+----.-|--||-+.|. .|-+-..+ +.+++.. .+-.
T Consensus 209 nRrlvY~r~lpki-d~r~ls--i~--krv~LlewgLnDRe~sVk~A~~d~il------~~Wl~~~dgni~ElL~~-ldvs 276 (892)
T KOG2025|consen 209 NRRLVYERCLPKI-DLRSLS--ID--KRVLLLEWGLNDREFSVKGALVDAIL------SGWLRFSDGNILELLER-LDVS 276 (892)
T ss_pred HHHHHHHHhhhhh-hhhhhh--HH--HHHHHHHHhhhhhhhHHHHHHHHHHH------HHHhhhccccHHHHHHH-hccc
Q ss_pred ChHHHHHHHHHHhhc
Q 001203 856 TIWQVRVEASRALLD 870 (1124)
Q Consensus 856 ~~~~vR~~A~~~l~~ 870 (1124)
++..|++.|+++|+.
T Consensus 277 nss~vavk~lealf~ 291 (892)
T KOG2025|consen 277 NSSEVAVKALEALFS 291 (892)
T ss_pred cchHHHHHHHHHHHH
No 53
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=36.62 E-value=1.1e+03 Score=30.69 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHh-cCCCchhhhhhhcccccCcCChHHHHHHHHHHhhccccccCChh
Q 001203 820 LTISCIRTLTQIALKL-SGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGID 879 (1124)
Q Consensus 820 vt~~~l~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vR~~A~~~l~~~~~~~~~~~ 879 (1124)
++.+||+++.+..... -|.|-.|....+++.|- +...+|.+|-+|++... .++++
T Consensus 209 l~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl---~ieelR~aac~cilaiV--sKkMk 264 (980)
T KOG2021|consen 209 LINSCLDCIGSFVSWIDINLIANDYFLNLLYKFL---NIEELRIAACNCILAIV--SKKMK 264 (980)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHH---hHHHHHHHHHHHHHHHH--hcCCC
Confidence 6778999988764321 12233344334444433 35789999999999874 45555
No 54
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.24 E-value=7.1e+02 Score=32.07 Aligned_cols=117 Identities=16% Similarity=0.199 Sum_probs=60.9
Q ss_pred cCCCCCchhhH--HHHHHHHHHHHHhcCCCchhhhhhhcccccCcCChHHHHHHHHHHhhccccccCChhHHHHHHHHHh
Q 001203 812 LMPSYNGILTI--SCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSV 889 (1124)
Q Consensus 812 ~~pSy~~~vt~--~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vR~~A~~~l~~~~~~~~~~~~~l~~~~~~~ 889 (1124)
.+=+|+..|.| .=|+++.+|+..- .+..+..-+..|+..-.. +.=.+|++|+=+++.....-...+..||+.+
T Consensus 321 Ff~kynDPiYvK~eKleil~~la~~~----nl~qvl~El~eYatevD~-~fvrkaIraig~~aik~e~~~~cv~~lLell 395 (734)
T KOG1061|consen 321 FFCKYNDPIYVKLEKLEILIELANDA----NLAQVLAELKEYATEVDV-DFVRKAVRAIGRLAIKAEQSNDCVSILLELL 395 (734)
T ss_pred eeeecCCchhhHHHHHHHHHHHhhHh----HHHHHHHHHHHhhhhhCH-HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHH
Confidence 35556666665 3344444443211 111122223444433222 2334688888887644332235788899888
Q ss_pred ccCC--cchhhhhHHHHHhhhhhhc------cCCCCCCCCChHHHHH-HHHHH
Q 001203 890 EEEP--SLRGQVKLGIHAMRICQIK------GGSDSNHEVDTVTLVA-LLNLL 933 (1124)
Q Consensus 890 ~~~~--~~~~~~~l~~~~~~~~~~~------~~~~~~~~l~~~~l~~-~~~~~ 933 (1124)
+..- .......+...+.|-++-. .-..+-..|+.|+-+. ++|++
T Consensus 396 ~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWil 448 (734)
T KOG1061|consen 396 ETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWIL 448 (734)
T ss_pred hhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHH
Confidence 8642 2333334555666655421 2233456788888877 77777
No 55
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=36.13 E-value=63 Score=29.49 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCCCCCCccEEEeCCCcccccccccceeeeeccccccCccccch-hhhhHHHHHHHHHHhh
Q 001203 288 AFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQ-AIDTSIKLSFALARQW 357 (1124)
Q Consensus 288 al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gagLii~s~~lL~~~~~id~-~~~~~~~laHELAHQW 357 (1124)
+-..+|..||.+ |+...+-.=+.. .......+|--.+..+.+.+.+....+ ......+++|||+|=|
T Consensus 6 ~r~~~e~~~G~d--l~~Vrvh~~~~a-~~~~~~~~A~A~T~G~~I~f~~g~~~~~s~~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 6 IRSRLERAFGAD--LSDVRVHTGPAA-SRAAAALGARAFTVGNDIYFAPGKYNPDSPEGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHhCCC--ccceEEEeCCch-hhhhhccCCeEEEECCEEEEcCCCcCCCCCCcchhHhHHHHHHH
Confidence 345678899854 666554432210 011123344334456666664433211 1223568999999964
No 56
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=35.19 E-value=87 Score=33.36 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCcccccccccc----eeeeeccccccCc-cccchhhhhHHHHHHHH
Q 001203 279 HNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA----AMGIFSSQILYDE-KVIDQAIDTSIKLSFAL 353 (1124)
Q Consensus 279 ~~tl~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~ga----gLii~s~~lL~~~-~~id~~~~~~~~laHEL 353 (1124)
+.+...+...++.|++.+|.++ ++ +.+- .| ..-||. |.++++..|+.-| .. ...+++|||
T Consensus 108 ~~~~~~l~~~~~~~~~~~~~~~--~~---i~ir-~~---ksrWGsc~~~~~I~ln~~L~~~P~~~------idYVvvHEL 172 (205)
T PF01863_consen 108 KQAKEYLPERLKKYAKKLGLPP--PK---IKIR-DM---KSRWGSCSSKGNITLNWRLVMAPPEV------IDYVVVHEL 172 (205)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc--ce---EEEe-eh---hhccccCCCCCcEEeecccccCCccH------HHHHHHHHH
Confidence 3556778888999999998643 43 3332 22 123543 4566666654433 33 245899999
Q ss_pred HHhhcCc
Q 001203 354 ARQWFGV 360 (1124)
Q Consensus 354 AHQWFG~ 360 (1124)
||-..-|
T Consensus 173 ~Hl~~~n 179 (205)
T PF01863_consen 173 CHLRHPN 179 (205)
T ss_pred HHhccCC
Confidence 9987644
No 57
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.13 E-value=1.2e+03 Score=30.46 Aligned_cols=259 Identities=18% Similarity=0.218 Sum_probs=127.4
Q ss_pred CCcHHHHHHHHHHHhCCCCcHhHHH----HHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHHhcCCCCC
Q 001203 668 GDVVAQAQAIAALEALPHLSFNVVN----TLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDEN 743 (1124)
Q Consensus 668 rDV~aQ~eAi~~L~~~~~~s~~~~~----~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~~~~~~~~ 743 (1124)
++-..+--|+.+|+..-+ ...+. -..+.+..++.| ||..|+.|+.++--+.++ -..|++-.|+++-|+.+
T Consensus 119 ~nq~vVglAL~alg~i~s--~EmardlapeVe~Ll~~~~~~--irKKA~Lca~r~irK~P~--l~e~f~~~~~~lL~ek~ 192 (866)
T KOG1062|consen 119 SNQYVVGLALCALGNICS--PEMARDLAPEVERLLQHRDPY--IRKKAALCAVRFIRKVPD--LVEHFVIAFRKLLCEKH 192 (866)
T ss_pred CCeeehHHHHHHhhccCC--HHHhHHhhHHHHHHHhCCCHH--HHHHHHHHHHHHHHcCch--HHHHhhHHHHHHHhhcC
Confidence 455556678888876532 22222 234555554444 899999999998655432 25677788888778765
Q ss_pred CCC-----------CCCCCCCChHHHHHHHHHHHHHHHhhc-----------cCCCChHHHHHHHHHHhh--------ch
Q 001203 744 IGL-----------PRPNDFRDFSEYFVLEAIPHAVAMVRA-----------ADNKSPREAVEFVLQLLK--------SI 793 (1124)
Q Consensus 744 ~~i-----------pk~NdFsd~~~Yfvqkaip~ala~vr~-----------~~g~~p~~v~~fLldll~--------~~ 793 (1124)
-++ -+-|. |-.+||=. -.|.-+..+|+ .+|.|-+..+--||.+|+ ..
T Consensus 193 hGVL~~~l~l~~e~c~~~~--~~l~~fr~-l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daS 269 (866)
T KOG1062|consen 193 HGVLIAGLHLITELCKISP--DALSYFRD-LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADAS 269 (866)
T ss_pred CceeeeHHHHHHHHHhcCH--HHHHHHHH-HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHH
Confidence 442 12221 33444433 44555556665 256677777777777777 12
Q ss_pred HHHHHHHHHHHHHHcccccCCCCCchhhHHHHHHHHHHHHHhcCCCch--hhhhhhcccccCcCChHHHHHHHHHHhhcc
Q 001203 794 LFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISL--DQVVKLIKPFRDFNTIWQVRVEASRALLDL 871 (1124)
Q Consensus 794 ~~~~~~~~ei~r~l~~D~~~pSy~~~vt~~~l~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vR~~A~~~l~~~ 871 (1124)
.....++.++-+ |-|.=-. -.|.|---|.++++-+-. ..|..-+ +.+-+++.. .-.++|-.|+..|+..
T Consensus 270 d~M~DiLaqvat--ntdsskN-~GnAILYE~V~TI~~I~~-~~~LrvlainiLgkFL~n-----~d~NirYvaLn~L~r~ 340 (866)
T KOG1062|consen 270 DLMNDILAQVAT--NTDSSKN-AGNAILYECVRTIMDIRS-NSGLRVLAINILGKFLLN-----RDNNIRYVALNMLLRV 340 (866)
T ss_pred HHHHHHHHHHHh--ccccccc-chhHHHHHHHHHHHhccC-CchHHHHHHHHHHHHhcC-----CccceeeeehhhHHhh
Confidence 344566666652 2221111 123333455555554311 1111111 112122211 1135666777777765
Q ss_pred ccccCChhHHHHH--HHHHhccC--Ccchhhh-hHHHHHhhhhhhccCCCCCCCCChHHHHHHHHHHhccccccchhhhh
Q 001203 872 EFHCNGIDSALSL--FIKSVEEE--PSLRGQV-KLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRH 946 (1124)
Q Consensus 872 ~~~~~~~~~~l~~--~~~~~~~~--~~~~~~~-~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~lr~ 946 (1124)
.-... ..+.+. ++-.+-.| ++++.+. .|...+++- ++ -..-+.+++..|++ .|...|.
T Consensus 341 V~~d~--~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~--------~N---v~~mv~eLl~fL~~----~d~~~k~ 403 (866)
T KOG1062|consen 341 VQQDP--TAVQRHRSTILECLKDPDVSIKRRALELSYALVNE--------SN---VRVMVKELLEFLES----SDEDFKA 403 (866)
T ss_pred hcCCc--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc--------cc---HHHHHHHHHHHHHh----ccHHHHH
Confidence 43322 233333 22223334 3444443 333322221 11 02223346666665 2556666
Q ss_pred hHHHHHHHhhcCCcc
Q 001203 947 HLFGILQILAGRAPT 961 (1124)
Q Consensus 947 ~~~~~~~~l~~~~~~ 961 (1124)
++..-+--|+.+|+.
T Consensus 404 ~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 404 DIASKIAELAEKFAP 418 (866)
T ss_pred HHHHHHHHHHHhcCC
Confidence 655555556665554
No 58
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=32.14 E-value=5.6e+02 Score=28.73 Aligned_cols=135 Identities=19% Similarity=0.249 Sum_probs=79.7
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhCCCCcHh--------HHHHHHHHhcCCCchhhHHHHHHHHHHccccccccc-cc
Q 001203 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFN--------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW-AG 727 (1124)
Q Consensus 657 ~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~--------~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~-~G 727 (1124)
-.+.+.-|+..+|..-|-.|.-++......+.. ....+...|.+ ..-.||..|..||...+....+. ..
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~--p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND--PNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC--CChHHHHHHHHHHHhcCCChhhHHHH
Confidence 356677788889999999998888865432211 22345566655 47899999999999887653221 11
Q ss_pred HHHHHHHHHhcCCCC-CC-----------CCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhhchHH
Q 001203 728 LLHLVKFYKSRRFDE-NI-----------GLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKSILF 795 (1124)
Q Consensus 728 ~~~L~k~f~~~~~~~-~~-----------~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~~~~ 795 (1124)
-.++-+.-+.....+ ++ ++.-.|+. ++.+-+.||.-+..+...++++-..|.+.|++|=.+...
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~----~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~ 167 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY----HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDM 167 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch----hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHH
Confidence 112222222111111 11 23333333 455667788777777766666666777777777665443
Q ss_pred HH
Q 001203 796 LS 797 (1124)
Q Consensus 796 ~~ 797 (1124)
..
T Consensus 168 ~~ 169 (254)
T PF04826_consen 168 TR 169 (254)
T ss_pred HH
Confidence 33
No 59
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.77 E-value=6.8e+02 Score=33.70 Aligned_cols=233 Identities=19% Similarity=0.205 Sum_probs=116.8
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHhCCCC-----c---HhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccc----ccc
Q 001203 658 QMWINQLEKDGDVVAQAQAIAALEALPHL-----S---FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE----TDW 725 (1124)
Q Consensus 658 ~m~~~QL~~drDV~aQ~eAi~~L~~~~~~-----s---~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~----~~~ 725 (1124)
-.+..|=-++.|+--|.-|+.-|...|.. + ......|..|+.|..-= ||+.|++|++.++-.- ..+
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~--vr~~a~rA~~a~~~~~~~~~~~~ 197 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSP--VRVAAVRALGAFAEYLENNKSEV 197 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcch--HHHHHHHHHHHHHHHhccchHHH
Confidence 35666777899999999999999876521 1 12445688899886433 9999999999876321 111
Q ss_pred c----cHHHHHHHHHhcCCCCCC---------------CCCCCCCCCChHHHHHHHHHHHHHHHhhccC--CCChHHHHH
Q 001203 726 A----GLLHLVKFYKSRRFDENI---------------GLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD--NKSPREAVE 784 (1124)
Q Consensus 726 ~----G~~~L~k~f~~~~~~~~~---------------~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~--g~~p~~v~~ 784 (1124)
. =++.|+..-.+.-++.++ .-|| = +..| +-.-|=-.+...+|.+ .....-|.+
T Consensus 198 ~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk--~---l~~~-l~~ii~~~l~Ia~n~~l~~~~R~~ALe 271 (1075)
T KOG2171|consen 198 DKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK--L---LRPH-LSQIIQFSLEIAKNKELENSIRHLALE 271 (1075)
T ss_pred HHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH--H---HHHH-HHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 1 134455555543332221 0111 0 0011 1111111222233221 112222333
Q ss_pred HHHHHhhc--------hHHHHH----HHHHHHHHHcccccCCCC------CchhhHHHHHHHHHHHHHhcCCCchhhhhh
Q 001203 785 FVLQLLKS--------ILFLSS----LLKRIDRLLQFDRLMPSY------NGILTISCIRTLTQIALKLSGFISLDQVVK 846 (1124)
Q Consensus 785 fLldll~~--------~~~~~~----~~~ei~r~l~~D~~~pSy------~~~vt~~~l~~l~~l~~~~~~~~~~~~~~~ 846 (1124)
||.-+.+. ..++.. +++..+-..-=|+|..+- .+.-.+.+.++|-+|+..+.|..=+..++.
T Consensus 272 ~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~ 351 (1075)
T KOG2171|consen 272 FLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFE 351 (1075)
T ss_pred HHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHH
Confidence 33333331 011111 121111111115665521 244455666777788877777766666666
Q ss_pred hcccccCcCChHHHHHHHHHHhhcccccc-CChhHHHHHHHHHh---ccCCcchhhh
Q 001203 847 LIKPFRDFNTIWQVRVEASRALLDLEFHC-NGIDSALSLFIKSV---EEEPSLRGQV 899 (1124)
Q Consensus 847 ~~~~~~~~~~~~~vR~~A~~~l~~~~~~~-~~~~~~l~~~~~~~---~~~~~~~~~~ 899 (1124)
.+..+... .-|.-|.||+-+|=-.+-.+ +-+...|.=.+..+ -.||.+|+|.
T Consensus 352 ~l~~~l~S-~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~ 407 (1075)
T KOG2171|consen 352 ALEAMLQS-TEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRY 407 (1075)
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Confidence 55554432 33788999999887764221 11112233333333 3478877753
No 60
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=31.15 E-value=3.2e+02 Score=31.12 Aligned_cols=124 Identities=17% Similarity=0.239 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHHHHHhcCCCchhhhhhhcccccCcCChHHHHHHHHHHhhccccc-------cC-------ChhHHHHH
Q 001203 819 ILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFH-------CN-------GIDSALSL 884 (1124)
Q Consensus 819 ~vt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vR~~A~~~l~~~~~~-------~~-------~~~~~l~~ 884 (1124)
.|-..++++|.-.++ +...+-.+.+.-++..+ .. ....||+.|+++|+|+... .. +....++.
T Consensus 42 ~vR~~al~cLGl~~L-ld~~~a~~~l~l~~~~~-~~-~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~ 118 (298)
T PF12719_consen 42 AVRELALKCLGLCCL-LDKELAKEHLPLFLQAL-QK-DDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKI 118 (298)
T ss_pred HHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHH-Hh-CCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHH
Confidence 444556666554433 12222222222222333 22 2689999999999997432 11 12256778
Q ss_pred HHHHhccC-CcchhhhhHHHHHhhhhhhccCCCCCCCCCh-HHHHHHHH-HHhccccccchhhhhhHHHHHHH
Q 001203 885 FIKSVEEE-PSLRGQVKLGIHAMRICQIKGGSDSNHEVDT-VTLVALLN-LLESRIAFNNVFLRHHLFGILQI 954 (1124)
Q Consensus 885 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~-~~~~~~~~~~~~lr~~~~~~~~~ 954 (1124)
|.+.+..+ |.++. +..+.+.=.-. ..++.. +++.+.|- +.-+-.+.+|.+||..+--++..
T Consensus 119 l~~~l~~~~~~~~~---~a~EGl~KLlL------~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~ 182 (298)
T PF12719_consen 119 LTKFLDSENPELQA---IAVEGLCKLLL------SGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPV 182 (298)
T ss_pred HHHHHhcCCHHHHH---HHHHHHHHHHh------cCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHH
Confidence 88888776 33222 11111111112 226666 77777443 33344445678999877666544
No 61
>PRK04860 hypothetical protein; Provisional
Probab=29.95 E-value=96 Score=32.31 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCcccccccccceeeee-ccccccCccccc--hhhhhHHHHHHHHHHhh
Q 001203 282 VEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVID--QAIDTSIKLSFALARQW 357 (1124)
Q Consensus 282 l~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gagLii~-s~~lL~~~~~id--~~~~~~~~laHELAHQW 357 (1124)
...+...+..-+++||.+||-+... |-.- + .. ||...+ +..+=++|.... .......+|+||+||.|
T Consensus 6 ~~~~~~~~~~a~~~f~~~f~~p~~~--f~~R---~---rt-aG~~~l~~~~I~~Np~ll~~~~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 6 MRRLRECLAQANLYFKRTFPEPKVS--YTQR---G---TS-AGTAWLQSNEIRLNPVLLLENQQAFIDEVVPHELAHLL 75 (160)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCEEE--Eeec---c---hh-hcchhHhcCCeeeCHHHHhhCcHHHHHhHHHHHHHHHH
Confidence 3445555666677888777665432 2211 1 11 232222 222223332211 11223458999999987
No 62
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.62 E-value=1.2e+02 Score=37.98 Aligned_cols=46 Identities=26% Similarity=0.396 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHccccccccc--ccHHHHHHHHHh
Q 001203 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW--AGLLHLVKFYKS 737 (1124)
Q Consensus 690 ~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~--~G~~~L~k~f~~ 737 (1124)
+|.|+.--|+|| ||-||.+|..+|.+.+...+.+ ..+..|+.+|..
T Consensus 374 ACGA~VhGlEDE--f~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfND 421 (823)
T KOG2259|consen 374 ACGALVHGLEDE--FYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFND 421 (823)
T ss_pred ccceeeeechHH--HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Confidence 688999999996 9999999999999998865544 457888887764
No 63
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=28.73 E-value=2.8e+02 Score=29.58 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHccccc-ccccccHHHHHHHHHhcCCCCCC-CCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCChHHHH
Q 001203 706 RVRIEAAYALANTASE-ETDWAGLLHLVKFYKSRRFDENI-GLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAV 783 (1124)
Q Consensus 706 ~VR~~Aa~aLa~~~~~-~~~~~G~~~L~k~f~~~~~~~~~-~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~ 783 (1124)
+||..|..+|..+... + ...|..++.. +.|++ ..+.++.-+ |.. ..++|.+.++-..+.
T Consensus 1 kvR~~Al~~L~al~k~~~-----~r~l~~yW~~--llP~~~~~~~~~~~s------Llt------~il~Dp~~kvR~aA~ 61 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTD-----KRSLFGYWPA--LLPDSVLQGRPATPS------LLT------CILKDPSPKVRAAAA 61 (182)
T ss_pred ChhHHHHHHHHHHHHhcC-----CceeHhhHHH--HCCCCCCcCCCCCcc------hhH------HHHcCCchhHHHHHH
Confidence 5899999999877654 2 1223333333 23443 223333222 222 667899899999999
Q ss_pred HHHHHHhh-ch--------------------HHHHHHHHHHHHHHcccccCCCCCchhhHHHHHHHHHHH
Q 001203 784 EFVLQLLK-SI--------------------LFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 832 (1124)
Q Consensus 784 ~fLldll~-~~--------------------~~~~~~~~ei~r~l~~D~~~pSy~~~vt~~~l~~l~~l~ 832 (1124)
++|..+|. +. ..+..++.|+.|.|-.----....- +...+||++.-|.
T Consensus 62 ~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~-~l~q~lK~la~Lv 130 (182)
T PF13251_consen 62 SALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPP-VLTQLLKCLAVLV 130 (182)
T ss_pred HHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccH-HHHHHHHHHHHHH
Confidence 99999998 11 1245678888877544332332222 4447788877653
No 64
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=27.74 E-value=8.7e+02 Score=30.04 Aligned_cols=216 Identities=20% Similarity=0.211 Sum_probs=105.9
Q ss_pred hHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 001203 689 NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAV 768 (1124)
Q Consensus 689 ~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~al 768 (1124)
.+...|.+.|.. ..-.||.-|+.+|++++.... |. ..... .| .-+|.-+
T Consensus 77 ~~~~~L~~gL~h--~~~~Vr~l~l~~l~~~~~~~~---~~---~~~~~------------~~-----------~l~~~i~ 125 (503)
T PF10508_consen 77 QYQPFLQRGLTH--PSPKVRRLALKQLGRIARHSE---GA---AQLLV------------DN-----------ELLPLII 125 (503)
T ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCH---HH---HHHhc------------Cc-----------cHHHHHH
Confidence 355678888876 467999999999998875431 11 11111 11 1234444
Q ss_pred HHhhccCCCChHHHHHHHHHHhhchHHHHHH-----HHHHHHHHcccccCCCCCchhhHHHHHHHHHHHH---------H
Q 001203 769 AMVRAADNKSPREAVEFVLQLLKSILFLSSL-----LKRIDRLLQFDRLMPSYNGILTISCIRTLTQIAL---------K 834 (1124)
Q Consensus 769 a~vr~~~g~~p~~v~~fLldll~~~~~~~~~-----~~ei~r~l~~D~~~pSy~~~vt~~~l~~l~~l~~---------~ 834 (1124)
..+++.+..+-..+.+.|.++.+...-++.+ +..+..++.- .+.++-+-+++.+.+++. .
T Consensus 126 ~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~------~~~~vR~Rv~el~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 126 QCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQ------SSDIVRCRVYELLVEIASHSPEAAEAVV 199 (503)
T ss_pred HHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhc------cCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 5556666666666666666666633222222 3333333222 122333333333333321 1
Q ss_pred hcCCCchhhhhhhcccccCcCChHHHHHHHHHHhhccccccCChh-----HHHHHHHHHh---ccCCcchhhh--hHHHH
Q 001203 835 LSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGID-----SALSLFIKSV---EEEPSLRGQV--KLGIH 904 (1124)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~vR~~A~~~l~~~~~~~~~~~-----~~l~~~~~~~---~~~~~~~~~~--~l~~~ 904 (1124)
..|.++. + +..+.+ .=..||+.|+|.|-.++....|.. .+++.+.+.+ ++||..+.-+ .....
T Consensus 200 ~sgll~~--l---l~eL~~--dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 200 NSGLLDL--L---LKELDS--DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred hccHHHH--H---HHHhcC--ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 1232222 1 122222 236789999999999976555554 2344455555 5567222211 11111
Q ss_pred HhhhhhhccCCCCCCCCC--hHHHHHHHHHHhccccccchhhhhhHHHHHHHhh
Q 001203 905 AMRICQIKGGSDSNHEVD--TVTLVALLNLLESRIAFNNVFLRHHLFGILQILA 956 (1124)
Q Consensus 905 ~~~~~~~~~~~~~~~~l~--~~~l~~~~~~~~~~~~~~~~~lr~~~~~~~~~l~ 956 (1124)
.-.+... ++..+. -|.+.+.+-.+.. +.|.-.+..+++.+-.++
T Consensus 273 ~g~la~~-----~~~~v~~~~p~~~~~l~~~~~---s~d~~~~~~A~dtlg~ig 318 (503)
T PF10508_consen 273 FGNLARV-----SPQEVLELYPAFLERLFSMLE---SQDPTIREVAFDTLGQIG 318 (503)
T ss_pred HHHHHhc-----ChHHHHHHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHHh
Confidence 1111111 111221 2455544433322 468888888887765554
No 65
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.41 E-value=1.6e+03 Score=29.29 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=64.6
Q ss_pred HhhCCCcHHHHHHHHHH----HhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHccccccc-cccc----HHHHHHH
Q 001203 664 LEKDGDVVAQAQAIAAL----EALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-DWAG----LLHLVKF 734 (1124)
Q Consensus 664 L~~drDV~aQ~eAi~~L----~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~-~~~G----~~~L~k~ 734 (1124)
|-+-+|-.-+--|+..+ .+.|+........-...|.+. -+||=+.+..-+..+-.... .-.+ .+-|++.
T Consensus 150 Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek--~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~i 227 (866)
T KOG1062|consen 150 LLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEK--HHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKI 227 (866)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhc--CCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 33336666666555444 444544333444444555553 38887766555554432211 0011 1233444
Q ss_pred HHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhh
Q 001203 735 YKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLK 791 (1124)
Q Consensus 735 f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~ 791 (1124)
.|.. -+++.|..=|.+...+=|+|.-|.+-+..+ |.--.++.+..-|+|-
T Consensus 228 Lk~l---~~~~yspeydv~gi~dPFLQi~iLrlLriL----Gq~d~daSd~M~DiLa 277 (866)
T KOG1062|consen 228 LKQL---TNSGYSPEYDVHGISDPFLQIRILRLLRIL----GQNDADASDLMNDILA 277 (866)
T ss_pred HHHH---hcCCCCCccCccCCCchHHHHHHHHHHHHh----cCCCccHHHHHHHHHH
Confidence 4432 234566677777777779999887777666 4445666666666665
No 66
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=24.27 E-value=1.8e+02 Score=29.64 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHhhcCcc
Q 001203 344 DTSIKLSFALARQWFGVY 361 (1124)
Q Consensus 344 ~~~~~laHELAHQWFG~l 361 (1124)
....+|.||++|.|....
T Consensus 59 ~~~~tL~HEm~H~~~~~~ 76 (157)
T PF10263_consen 59 ELIDTLLHEMAHAAAYVF 76 (157)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 345689999999997443
No 67
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=24.00 E-value=1.2e+02 Score=28.70 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHhhccccccCChhHHHHHHHHHh------ccCCcchhh
Q 001203 857 IWQVRVEASRALLDLEFHCNGIDSALSLFIKSV------EEEPSLRGQ 898 (1124)
Q Consensus 857 ~~~vR~~A~~~l~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~ 898 (1124)
-..||..|.|+|..+....+ +.+|.+|-+.. ..||..+.+
T Consensus 40 d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~d~~Vr 85 (97)
T PF12755_consen 40 DSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADPDENVR 85 (97)
T ss_pred cHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCchhHH
Confidence 47899999999999977666 34566655443 335554443
No 68
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=22.65 E-value=5.2e+02 Score=35.54 Aligned_cols=141 Identities=18% Similarity=0.194 Sum_probs=77.4
Q ss_pred HHHHHHHHHhhchHH---HHHHHHHHHHH--HcccccCCCCCchhhHHHHHHHHHHHHHhcCCCchhh----hhhhcccc
Q 001203 781 EAVEFVLQLLKSILF---LSSLLKRIDRL--LQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQ----VVKLIKPF 851 (1124)
Q Consensus 781 ~v~~fLldll~~~~~---~~~~~~ei~r~--l~~D~~~pSy~~~vt~~~l~~l~~l~~~~~~~~~~~~----~~~~~~~~ 851 (1124)
--+.|.+++|+...+ =..+++.+.-+ +.+|++.|.+-.|+|. +|+.+..+ +...+|.+. +|.+...|
T Consensus 780 ~~~~~~~~ll~~k~~~~~~~~~~~~l~~Fv~~l~d~l~~~~e~V~~~-tLr~l~~l---~~~~L~~~~~~s~lF~~~~~~ 855 (1364)
T KOG1823|consen 780 KLALFFLDLLRGKKTKSSDDSTVSQLVPFVSILCDSLLSIREKVITS-TLRNLIDL---LRHQLDQIESVSELFKLLARK 855 (1364)
T ss_pred HHHHHHHHHHhcccccCccHhHHHHHHhHHHHHHHhhcchhhHHHHH-HHHHHHHH---HhccccHHHHHHHHHHHHHHH
Confidence 456788888882211 01223333322 5679999999999984 34444443 344455432 34444444
Q ss_pred cCcCC------hHHHHHHHHHHhhccccccCChhHHHHHHHHHhccCCc-chhhhhHHHHHhhhhhhccCCCCCCCCChH
Q 001203 852 RDFNT------IWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPS-LRGQVKLGIHAMRICQIKGGSDSNHEVDTV 924 (1124)
Q Consensus 852 ~~~~~------~~~vR~~A~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 924 (1124)
...|+ ..+.-..++-+|+.......+-.+.|++++..+++|-+ +..+. ++..++....+ + +++.|
T Consensus 856 ~~~gs~~~~~el~q~~~k~~t~lI~~~~s~~i~e~~ls~ll~~~~sD~~d~~rq~-~~F~l~kAl~~-r------~i~~~ 927 (1364)
T KOG1823|consen 856 RHSGSPSTNFELCQDSFKGFTALIAQVGSVKIKEDVLSYLLARVESDISDPSRQG-LAFSLLKALVS-R------KIMLP 927 (1364)
T ss_pred hhcCCCcccHHHHHHHHHHHHHHHHHhcceeeeHHHHHHHHHHhccccccchhHH-HHHHHHHHHHh-c------cccch
Confidence 44442 23445566666666543334445889999999999744 32332 34444444333 2 56677
Q ss_pred HHHHHHHHH
Q 001203 925 TLVALLNLL 933 (1124)
Q Consensus 925 ~l~~~~~~~ 933 (1124)
+|-+.....
T Consensus 928 eL~~imd~v 936 (1364)
T KOG1823|consen 928 ELYEIMDKV 936 (1364)
T ss_pred HHHHHHHHH
Confidence 765544443
No 69
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.50 E-value=8e+02 Score=31.91 Aligned_cols=119 Identities=20% Similarity=0.227 Sum_probs=77.0
Q ss_pred cCCCcEEEEEccCCCHH-HHHHHHhhCCCcHHHHHHHHHHHhC----CC-------CcHhHHHHHHHHhcCCCchhhHHH
Q 001203 642 DPEMEYLAEIHFNQPVQ-MWINQLEKDGDVVAQAQAIAALEAL----PH-------LSFNVVNTLNNFLSDSKAFWRVRI 709 (1124)
Q Consensus 642 Dpd~ewl~~v~~~qp~~-m~~~QL~~drDV~aQ~eAi~~L~~~----~~-------~s~~~~~~L~~~l~d~~~Fy~VR~ 709 (1124)
|-=.+||+++-+.+++. ..+-|+-...|+..|.-||+-|... |. .++..++-|...|.|.| ==||-
T Consensus 107 dd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr--E~IRN 184 (970)
T KOG0946|consen 107 DDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR--EPIRN 184 (970)
T ss_pred hHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh--hhhch
Confidence 44568888888877654 3444555567999998888776643 10 11224556777788864 45899
Q ss_pred HHHHHHHcccccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccC----CCChHHHHHH
Q 001203 710 EAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD----NKSPREAVEF 785 (1124)
Q Consensus 710 ~Aa~aLa~~~~~~~~~~G~~~L~k~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~----g~~p~~v~~f 785 (1124)
+|..-|......-+.-.-+-+.-.+|-.+ ++.|+.+. |..-.++.-|
T Consensus 185 e~iLlL~eL~k~n~~IQKlVAFENaFerL-----------------------------fsIIeeEGg~dGgIVveDCL~l 235 (970)
T KOG0946|consen 185 EAILLLSELVKDNSSIQKLVAFENAFERL-----------------------------FSIIEEEGGLDGGIVVEDCLIL 235 (970)
T ss_pred hHHHHHHHHHccCchHHHHHHHHHHHHHH-----------------------------HHHHHhcCCCCCcchHHHHHHH
Confidence 99988887765433222233334445443 36777764 3667899999
Q ss_pred HHHHhh
Q 001203 786 VLQLLK 791 (1124)
Q Consensus 786 Lldll~ 791 (1124)
|++|||
T Consensus 236 l~NLLK 241 (970)
T KOG0946|consen 236 LNNLLK 241 (970)
T ss_pred HHHHHh
Confidence 999999
No 70
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=21.65 E-value=5.3 Score=30.65 Aligned_cols=26 Identities=8% Similarity=0.244 Sum_probs=15.0
Q ss_pred CCChHHHHHHHHHHHHHHHhhccCCCC
Q 001203 752 FRDFSEYFVLEAIPHAVAMVRAADNKS 778 (1124)
Q Consensus 752 Fsd~~~Yfvqkaip~ala~vr~~~g~~ 778 (1124)
||+|... |||-....|+.+||.+|+|
T Consensus 2 ys~F~~W-LqCY~v~gM~sl~D~~gRT 27 (39)
T PF09292_consen 2 YSAFEAW-LQCYSVPGMKSLRDRNGRT 27 (39)
T ss_dssp HHHHHHH--SSTT-TT-EEEE-TTS-E
T ss_pred cHHHHHH-HHHhcccccccccccCCCE
Confidence 4445443 6777777889999999986
No 71
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=21.27 E-value=1.1e+02 Score=32.94 Aligned_cols=20 Identities=10% Similarity=0.027 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHhhcCccccc
Q 001203 345 TSIKLSFALARQWFGVYITP 364 (1124)
Q Consensus 345 ~~~~laHELAHQWFG~lVt~ 364 (1124)
...+||||++|-.-++....
T Consensus 89 l~aVlaHElgH~~~~h~~~~ 108 (226)
T PF01435_consen 89 LAAVLAHELGHIKHRHILKS 108 (226)
T ss_dssp HHHHHHHHHHHHHTTHCCCC
T ss_pred HHHHHHHHHHHHHcCCcchH
Confidence 34589999999988876544
Done!