Query 001203
Match_columns 1124
No_of_seqs 411 out of 2108
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 16:16:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b34_A Aminopeptidase N; prote 100.0 2.1E-71 7.2E-76 701.8 68.0 546 13-682 33-594 (891)
2 3ebh_A PFA-M1, M1 family amino 100.0 2.6E-71 9E-76 696.8 58.4 542 14-682 9-578 (889)
3 3se6_A Endoplasmic reticulum a 100.0 1.7E-68 5.7E-73 682.9 59.5 601 13-718 67-706 (967)
4 2gtq_A Aminopeptidase N; alani 100.0 4.7E-68 1.6E-72 673.0 54.9 540 16-682 13-568 (867)
5 2xdt_A Endoplasmic reticulum a 100.0 1.5E-67 5.3E-72 673.8 52.3 588 12-717 6-637 (897)
6 4fke_A Aminopeptidase N; zinc 100.0 5.7E-67 2E-71 669.9 53.6 590 12-716 8-639 (909)
7 1z5h_A Tricorn protease intera 100.0 3.3E-67 1.1E-71 661.8 44.4 544 19-719 1-556 (780)
8 3u9w_A Leukotriene A-4 hydrola 100.0 2E-67 6.7E-72 648.0 29.0 452 17-533 12-473 (608)
9 3cia_A Cold-active aminopeptid 100.0 1.9E-61 6.6E-66 594.4 38.1 430 14-519 21-464 (605)
10 2xq0_A LTA-4 hydrolase, leukot 100.0 1.4E-61 4.8E-66 597.6 35.5 430 15-518 24-466 (632)
11 4fgm_A Aminopeptidase N family 99.9 6.7E-22 2.3E-26 241.2 20.4 312 188-514 110-452 (597)
12 3ltm_A Alpha-REP4; protein eng 95.7 0.096 3.3E-06 54.2 13.4 171 657-897 21-192 (211)
13 3ltj_A Alpharep-4; protein eng 94.9 0.25 8.4E-06 50.6 13.2 103 657-791 15-117 (201)
14 1oyz_A Hypothetical protein YI 93.5 0.99 3.4E-05 48.6 15.0 101 663-791 98-202 (280)
15 1oyz_A Hypothetical protein YI 93.4 1.7 5.8E-05 46.7 16.7 200 657-897 25-239 (280)
16 2vgl_B AP-2 complex subunit be 92.2 4.4 0.00015 49.0 19.8 206 661-897 126-371 (591)
17 3ltj_A Alpharep-4; protein eng 91.2 1.3 4.4E-05 45.1 11.6 97 663-791 52-148 (201)
18 1te4_A Conserved protein MTH18 90.6 0.12 3.9E-06 49.7 2.7 104 655-791 11-114 (131)
19 3ltm_A Alpha-REP4; protein eng 89.9 1.7 5.9E-05 44.5 11.3 134 661-832 55-202 (211)
20 1te4_A Conserved protein MTH18 88.5 0.66 2.3E-05 44.3 6.4 85 661-771 47-131 (131)
21 2vgl_B AP-2 complex subunit be 87.0 11 0.00039 45.4 17.6 94 666-775 96-191 (591)
22 1w63_A Adapter-related protein 86.4 11 0.00037 45.9 17.0 200 666-892 323-559 (618)
23 1b3u_A Protein (protein phosph 83.3 7.9 0.00027 45.7 13.6 59 660-720 168-232 (588)
24 1b3u_A Protein (protein phosph 83.1 11 0.00036 44.6 14.6 265 660-956 285-586 (588)
25 3rjo_A Endoplasmic reticulum a 79.9 2.4 8.3E-05 49.1 7.1 73 510-599 1-80 (419)
26 4fdd_A Transportin-1; heat rep 78.6 25 0.00084 44.2 16.4 54 666-721 184-245 (852)
27 2qk2_A LP04448P; mini spindles 75.2 16 0.00056 38.1 11.5 58 660-720 20-86 (242)
28 2vgl_A Adaptor protein complex 74.7 31 0.001 42.0 15.1 268 666-960 121-436 (621)
29 2jdq_A Importin alpha-1 subuni 72.3 59 0.002 36.6 16.1 114 659-791 68-202 (450)
30 2vgl_A Adaptor protein complex 71.1 41 0.0014 40.8 15.1 107 665-791 338-451 (621)
31 3ul1_B Importin subunit alpha- 70.7 30 0.001 40.7 13.5 75 660-736 105-195 (510)
32 1w63_A Adapter-related protein 70.3 50 0.0017 39.9 15.6 221 658-898 144-404 (618)
33 4db8_A Armadillo-repeat protei 68.6 20 0.00069 37.1 10.2 80 655-736 11-106 (252)
34 4hxt_A De novo protein OR329; 66.7 1E+02 0.0035 31.2 15.3 71 664-736 10-96 (252)
35 3tpo_A Importin subunit alpha- 66.4 70 0.0024 37.6 15.5 270 660-956 124-448 (529)
36 4db6_A Armadillo repeat protei 65.2 28 0.00095 34.9 10.2 117 655-791 11-148 (210)
37 1wa5_B Importin alpha subunit; 62.6 97 0.0033 36.2 15.7 97 656-772 88-201 (530)
38 1u6g_C TIP120 protein, CAND1; 59.4 2.3E+02 0.0078 37.0 19.9 255 661-958 12-285 (1230)
39 4b8j_A Importin subunit alpha- 57.3 88 0.003 36.4 14.0 76 658-735 120-211 (528)
40 4b8j_A Importin subunit alpha- 56.0 99 0.0034 36.0 14.2 97 656-772 75-188 (528)
41 2qk1_A Protein STU2; STU2P, XM 53.0 70 0.0024 33.9 11.0 58 660-720 21-90 (249)
42 2y3u_A Collagenase, collagenas 51.5 6.1 0.00021 49.1 2.6 106 276-382 338-468 (785)
43 4db8_A Armadillo-repeat protei 51.5 60 0.002 33.4 10.2 74 661-736 59-148 (252)
44 4hxt_A De novo protein OR329; 50.3 1E+02 0.0035 31.2 11.7 75 660-736 48-138 (252)
45 4ady_A RPN2, 26S proteasome re 48.0 5.4E+02 0.018 32.8 20.5 191 670-897 451-663 (963)
46 4fdd_A Transportin-1; heat rep 45.1 4.3E+02 0.015 32.6 18.4 113 666-791 23-138 (852)
47 1lsh_A Lipovitellin (LV-1N, LV 44.5 71 0.0024 41.4 11.1 91 799-897 472-563 (1056)
48 1u4g_A Elastase, pseudolysin; 43.9 1E+02 0.0034 33.9 10.5 103 277-390 72-180 (301)
49 1qgr_A Protein (importin beta 43.3 5.4E+02 0.018 31.4 21.0 59 662-720 134-203 (876)
50 1bqb_A Protein (aureolysin); h 39.7 1.2E+02 0.0041 33.4 10.2 98 278-383 67-177 (301)
51 3cqb_A Probable protease HTPX 38.3 41 0.0014 31.0 5.4 17 345-361 83-99 (107)
52 1qgr_A Protein (importin beta 37.9 5.1E+02 0.017 31.7 17.3 58 661-719 7-65 (876)
53 1u6g_C TIP120 protein, CAND1; 37.8 80 0.0028 41.3 10.3 199 666-898 58-274 (1230)
54 2vqx_A Metalloproteinase; ther 35.8 1.6E+02 0.0054 33.0 10.5 106 277-390 89-202 (341)
55 2of3_A ZYG-9; multifunctional 35.3 3.2E+02 0.011 29.3 12.7 53 821-876 184-239 (266)
56 3dnz_A Thermolysin; hydrolase, 31.7 2.1E+02 0.0071 31.6 10.5 102 276-385 68-177 (316)
57 2bpt_A Importin beta-1 subunit 31.5 7.8E+02 0.027 29.9 19.9 51 669-719 148-209 (861)
58 1wa5_B Importin alpha subunit; 31.2 2.8E+02 0.0096 32.1 12.6 89 664-772 307-411 (530)
59 3tjz_B Coatomer subunit gamma; 31.1 1.3E+02 0.0043 33.9 9.0 200 666-893 114-336 (355)
60 2bpt_A Importin beta-1 subunit 29.2 7.6E+02 0.026 30.0 16.8 55 666-720 15-70 (861)
61 2qk2_A LP04448P; mini spindles 28.8 4E+02 0.014 27.1 12.1 130 820-957 73-205 (242)
62 4ger_A Gentlyase metalloprotea 28.1 2.4E+02 0.0083 30.9 10.2 101 277-385 62-170 (304)
63 2z6g_A B-catenin; FULL-length, 28.1 7.1E+02 0.024 30.6 16.1 78 659-737 445-541 (780)
64 4db6_A Armadillo repeat protei 26.4 81 0.0028 31.4 5.9 60 659-720 57-125 (210)
65 3ul1_B Importin subunit alpha- 24.1 2.5E+02 0.0087 32.6 10.5 52 667-720 327-387 (510)
66 2jdq_A Importin alpha-1 subuni 23.6 4E+02 0.014 29.5 11.8 90 663-772 241-346 (450)
67 3now_A UNC-45 protein, SD10334 22.2 2.4E+02 0.0081 35.4 9.9 112 660-791 585-718 (810)
68 3c37_A Peptidase, M48 family; 21.9 53 0.0018 35.1 3.5 54 304-361 63-116 (253)
69 3u0r_A Apoptosis inhibitor 5; 21.1 1E+03 0.035 27.8 15.2 42 678-721 54-95 (507)
No 1
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=100.00 E-value=2.1e-71 Score=701.84 Aligned_cols=546 Identities=16% Similarity=0.186 Sum_probs=415.0
Q ss_pred CCCCCCeEEEEEEEEEEEECCCcEEEEEEEEEEEeCCccEEEEEcCCceeEEEEEcCeee-eeeecCCCcccchhhhhhc
Q 001203 13 KVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPT-EFEYYPHNHQNVENEKRWR 91 (1124)
Q Consensus 13 ~~~~~~~~~~Hy~l~L~id~~~~~~~G~v~Iti~~~~l~~I~L~a~~L~I~~V~Vng~~~-~f~~~~~~~~~~~~~~~~~ 91 (1124)
....+++.+.||+|++++|+++.++.|.++|++...+++.|.||+++|+|.+|++||.++ .|+..+
T Consensus 33 ~y~~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~l~Ld~~~L~I~sV~v~G~~l~~y~~~~------------- 99 (891)
T 3b34_A 33 DYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVRHGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEE------------- 99 (891)
T ss_dssp GCCCCSEEEEEEEEEEECCSSCEEEEEEEEEEECSCTTCCEEEECSSCEEEEEEETTEECCSEEEET-------------
T ss_pred hCCCCCceeEEEEEEEEEECCceEEEEEEEEEEccCCCCEEEEECCCCEEEEEEEcCEEcceEEeeC-------------
Confidence 456778999999999999999999999999987544567899999999999999999887 554432
Q ss_pred ccccCCChhhhHHHHHHHHhhhcCCcCcEEEEcCCCCCCccccccceeeeEEEeeeccccccceeEEEEEEEecccccce
Q 001203 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIH 171 (1124)
Q Consensus 92 ~lv~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v~i~y~~~~p~~Gi~ 171 (1124)
..|.|. + ++ +.++++ +.|.+.+..+. ...|++
T Consensus 100 --------------------------~~L~I~---~---lp---~~~~l~--I~y~~~p~~~~-----------~l~Gly 131 (891)
T 3b34_A 100 --------------------------GALVIS---N---LP---ERFTLK--IINEISPAANT-----------ALEGLY 131 (891)
T ss_dssp --------------------------TEEEEC---S---CC---SEEEEE--EEEEECGGGCC-----------SCCEEE
T ss_pred --------------------------CEEEEE---e---CC---CeEEEE--EEEEEeecccC-----------CCceEE
Confidence 136663 1 11 123333 44555433211 113444
Q ss_pred eecceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCC-c-EEEecCccceeeeecCCCCCeEEEEEccCCcchHhHH
Q 001203 172 FDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWIT 249 (1124)
Q Consensus 172 F~~~~~~T~~ep~~AR~wFPC~D~P~~Katf~L~ItvP~~-~-~avSnG~L~~~~~~~~~~~~kt~~F~~t~P~s~ylia 249 (1124)
+.+.+++|||||.+||+||||+|+|+.||+|+++|++|++ | +++|||+++++.. .++++++++|+.++|||+|++|
T Consensus 132 ~s~~~~~Tq~Ep~~AR~~fPc~DeP~~kAtf~itI~~p~~~y~~alSNg~l~~~~~--~~~g~~~~~f~~t~pmstYL~A 209 (891)
T 3b34_A 132 QSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGE--LENGRHWVQWQDPFPKPCYLFA 209 (891)
T ss_dssp EETTEEEEECTTTTGGGTSSBCCSTTCCEEEEEEEEEETTTCCEEEESSEEEEEEE--CSTTEEEEEEEEEEEECGGGCC
T ss_pred EeCCEEEeccccCCCCccccCCCCcccceEEEEEEEeccccceEEEeCCcccccee--ecCCeEEEEEEeCCCccceeeE
Confidence 4455789999999999999999999999999999999997 6 9999999987653 3567899999999999999999
Q ss_pred hhccCceEeecC----CC--CceEEEecCChhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCcccccccccc
Q 001203 250 LAVAPFEVLPDH----HQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA 323 (1124)
Q Consensus 250 faVG~F~~~~~~----~~--~~v~~y~~P~~~~~~~~tl~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~ga 323 (1124)
|+||+|+.+++. .+ .++++|++|+..+.++++++.++++++|||++||++|||++|++|++|++..++|+++
T Consensus 210 ~~vG~f~~~~~~~~t~~g~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~k~diVavPdf~~GaMEn~-- 287 (891)
T 3b34_A 210 LVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENK-- 287 (891)
T ss_dssp EEEECCEEEEEEEECTTCCEEEEEEEECTTCGGGCHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESCCSSSEECCT--
T ss_pred EEeccceEEeeeeeccCCCceEEEEEeccCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEcCCCCcCccccC--
Confidence 999999998752 22 5799999999999999999999999999999999999999999999997666788887
Q ss_pred eeeeec-cccccCccccc-hhh-hhHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q 001203 324 AMGIFS-SQILYDEKVID-QAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK 400 (1124)
Q Consensus 324 gLii~s-~~lL~~~~~id-~~~-~~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~ry~~~~ 400 (1124)
|+++|+ ..+|+++.... ... ....+||||+|||||||+|||+||+|+|||||||+|++.+|++...|....++....
T Consensus 288 GLitf~e~~lL~~~~~~t~~~~~~i~~vIAHElAHqWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~~~~~~~~~~~~~ 367 (891)
T 3b34_A 288 GLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVR 367 (891)
T ss_dssp TEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred ceeEecccccccCcccCcHHHHHHHHHHHHHHHHHHHhCCCCcccchhhceehHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 678885 56788765432 222 234689999999999999999999999999999999999999988876544332211
Q ss_pred HhhhhhhcccCCCccccCCCCcccCCC---CcccccccchhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCCCCCC
Q 001203 401 ANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRT 477 (1124)
Q Consensus 401 ~~~~~~~~d~~~~~~L~s~~s~~~l~~---~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~~ 477 (1124)
.........+.+ +..+++.. .++...|+.++|.||++|||||+..||++.|+++|+.|++++++++
T Consensus 368 ~l~~~~~~~D~~-------~~~~Pi~~~~~~~i~~~f~~i~Y~KGa~VLrML~~~lG~e~F~~gLr~Yl~~~~~~~---- 436 (891)
T 3b34_A 368 TMRGLQFAEDAS-------PMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSA---- 436 (891)
T ss_dssp HHHHTHHHHHTS-------TTCCCSSCSEESCGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEE----
T ss_pred HHHHhhhhhhcc-------ccCCCCccccccccccccccchhhHHHHHHHHHHHHHCHHHHHHHHHHHHHhccCCC----
Confidence 111100111111 11222221 2345678899999999999999999999999999999999999885
Q ss_pred CCHHHHHHHHHHhcCCCCcCHHHHHHHHHcCCCcceEEEEEEEeccccEEEEEEEeeccCCCCCCCCccCCCCCCCCCCC
Q 001203 478 LSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 557 (1124)
Q Consensus 478 lst~~F~~l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1124)
++++||++.+++++| .|+++ |++|++++|+|.++|+..|+.+++.++++++|...... ....
T Consensus 437 att~Df~~ale~~sg---~dL~~-f~~W~~q~G~P~l~V~~~~~~~~~~~~ltl~Q~~~~~~--------------~~~~ 498 (891)
T 3b34_A 437 ATCDDFVQAMEDASN---VDLSH-FRRWYSQSGTPIVTVKDDYNPETEQYTLTISQRTPATP--------------DQAE 498 (891)
T ss_dssp ECHHHHHHHHHHHHC---CCCTT-TTHHHHCCSCCEEEEEEEEETTTTEEEEEEEEECCCBT--------------TBSC
T ss_pred CCHHHHHHHHHHHhC---CCHHH-HHHHHcCCCCceEEEEEEeecCCCEEEEEEEEecCCCC--------------CCCC
Confidence 799999999999984 57888 57999999999999999998777777788877542110 0012
Q ss_pred CCCcceeEEEEEEccCCccccccccCCCCc-eEEEeeeccchhhHhhhcCCCCCCCCCCCCCCCCccccccccccCCCCc
Q 001203 558 DIGWPGMMSIRVHELDGMYDHPILPMAGDA-WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPL 636 (1124)
Q Consensus 558 ~~~~~gpmtIri~E~DGt~eh~v~~i~~~~-~~~~ei~~~sKy~~~R~~k~kk~~~~~~~~~~~d~~~~~d~~~~~~~p~ 636 (1124)
...|+.|+++.+.+.||... .+ .+.+.. ..++.+ ++.+...+ +... .+.|
T Consensus 499 ~~~~~iPi~v~l~~~~G~~~-~~-~~~~~~~~~~~~l--------------------~~~~~~~~-~~~v-----~~~P- 549 (891)
T 3b34_A 499 KQPLHIPFAIELYDNEGKVI-PL-QKGGHPVNSVLNV--------------------TQAEQTFV-FDNV-----YFQP- 549 (891)
T ss_dssp CCCCCEEEEEEEECTTSCBC-CC-EETTEECCSEEEE--------------------CSSEEEEE-ECCC-----CSCC-
T ss_pred CceEEEEEEEEEEcCCCCcc-cc-cccccccceEEEe--------------------cCCcEEEE-EccC-----CCCC-
Confidence 34699999999998888631 11 011110 000111 00000000 1000 1223
Q ss_pred eEEEEcCCCcEEEEEccCCCHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 001203 637 SWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (1124)
Q Consensus 637 ~WIRiDpd~ewl~~v~~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~ 682 (1124)
||++|+++....+|++++++++|+.||++|+|+.+|.||++.|.+
T Consensus 550 -~~~l~~~~s~~~~v~~~~~~~~l~~~l~~d~d~~~R~~a~~~L~~ 594 (891)
T 3b34_A 550 -VPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWDAAQSLLA 594 (891)
T ss_dssp -EEEESTTCCSSCEEECCCCHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred -cEEEcCCCcceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999985
No 2
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=100.00 E-value=2.6e-71 Score=696.80 Aligned_cols=542 Identities=13% Similarity=0.133 Sum_probs=417.6
Q ss_pred CCCCCeEEEEEEEEEEEECCCcEEEEEEEEEEEeC-CccEEEEEcCCceeEEEEEcCeeee----eeecCCCcccchhhh
Q 001203 14 VENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-DIGIVGLHAENLGIESVLVDGEPTE----FEYYPHNHQNVENEK 88 (1124)
Q Consensus 14 ~~~~~~~~~Hy~l~L~id~~~~~~~G~v~Iti~~~-~l~~I~L~a~~L~I~~V~Vng~~~~----f~~~~~~~~~~~~~~ 88 (1124)
..++++.+.||+|++++|+++++++|.++|++.+. +++.|.||+++|+|.+|+|||.++. |.+.+
T Consensus 9 y~~~~~~V~h~~L~l~ld~~~~~v~G~~~i~~~~~~~~~~l~LD~~~L~I~sV~vnG~~l~~~~~~~~~~---------- 78 (889)
T 3ebh_A 9 YKPSGFIINQVTLNINIHDQETIVRSVLDMDISKHNVGEDLVFDGVGLKINEISINNKKLVEGEEYTYDN---------- 78 (889)
T ss_dssp CCCCSEEEEEEEEEEEECSSCEEEEEEEEEEECTTCCSCCEEEECCSCEEEEEEETTEECCBTTTEEECS----------
T ss_pred CCCCCcEEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCceEEEECCCCEEEEEEECCEEcCcccceEecC----------
Confidence 56789999999999999999999999999987653 4789999999999999999998753 33221
Q ss_pred hhcccccCCChhhhHHHHHHHHhhhcCCcCcEEEEcCCCCCCccccccceeeeEEEeeeccccccceeEEEEEEEecccc
Q 001203 89 RWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEV 168 (1124)
Q Consensus 89 ~~~~lv~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v~i~y~~~~p~~ 168 (1124)
..|.|.++ . ++. +.+++ .+.|.|.+..+. .-.
T Consensus 79 -----------------------------~~L~I~l~---~-l~~--~~~~l--~I~y~~~p~~~~-----------~l~ 110 (889)
T 3ebh_A 79 -----------------------------EFLTIFSK---F-VPK--SKFAF--SSEVIIHPETNY-----------ALT 110 (889)
T ss_dssp -----------------------------SEEEECGG---G-SCS--SSEEE--EEEEEECGGGCT-----------TCS
T ss_pred -----------------------------CEEEEecC---C-CCC--CcEEE--EEEEEecCccCC-----------Cce
Confidence 24677432 1 221 22333 345555543211 112
Q ss_pred cceeecceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCC-c-EEEecCccceeeeecCCCCCeEEEEEccCCcchH
Q 001203 169 GIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAK 246 (1124)
Q Consensus 169 Gi~F~~~~~~T~~ep~~AR~wFPC~D~P~~Katf~L~ItvP~~-~-~avSnG~L~~~~~~~~~~~~kt~~F~~t~P~s~y 246 (1124)
|+++.+.+++|||||.+||+||||+|+|+.||||+++|++|++ | +++|||+++++.. .++++++++|..++|||+|
T Consensus 111 Gly~s~~~~~TQ~Ep~~AR~~fPC~DeP~~KAtf~itIt~p~~~~~valSNg~l~~~~~--~~~g~~~~~f~~t~pmstY 188 (889)
T 3ebh_A 111 GLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDKVNEFE--IPGGRHGARFNDPPLKPCY 188 (889)
T ss_dssp EEEEETTEEEEECTTTTGGGTSCBCCSTTCCEEEEEEEEEETTTCCEEEESSEEEEEEE--ETTTEEEEEEEEEEEECGG
T ss_pred eeEEECCeEEEcccCCCCCEEEEEcCCCCcceEEEEEEEEccccCeEEEccCcccccee--cCCCeEEEEEecCCccchh
Confidence 4444455799999999999999999999999999999999997 8 5799999987653 2467899999999999999
Q ss_pred hHHhhccCceEeecC-----CC--CceEEEecCChhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCcccccc
Q 001203 247 WITLAVAPFEVLPDH-----HQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSS 319 (1124)
Q Consensus 247 liafaVG~F~~~~~~-----~~--~~v~~y~~P~~~~~~~~tl~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~ 319 (1124)
++||+||+|+++++. .+ .++++|++|+..+.++++++.++++++|||++||++|||++|++|++|++..++|+
T Consensus 189 LvA~~vG~f~~~~~~~~t~~~G~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~kyd~VavPdF~~GaME 268 (889)
T 3ebh_A 189 LFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAME 268 (889)
T ss_dssp GCCEEEECEEEEEEEEECSSSCCEEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESCCSSSEEC
T ss_pred heeeEEecceEEeeeeeecCCCCceEEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCCCceEEEEeccccchhhc
Confidence 999999999988753 23 46899999999999999999999999999999999999999999999976667888
Q ss_pred cccceeeeec-cccccCcccc-chhh-hhHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHhCChHHHH
Q 001203 320 TFGAAMGIFS-SQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARY 396 (1124)
Q Consensus 320 ~~gagLii~s-~~lL~~~~~i-d~~~-~~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~ry 396 (1124)
++ |+++|+ ..+|+++... +... ....+||||+|||||||+|||+||+|+|||||||+|++.+|.+...|....++
T Consensus 269 N~--GLvtf~e~~lL~~~~~~t~~~~~~i~~vIAHElAHQWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~~~~~~~r~ 346 (889)
T 3ebh_A 269 NK--GLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTTRL 346 (889)
T ss_dssp CT--TEEEEEGGGTCCCTTTSCTHHHHHHHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHHHCCTHHHH
T ss_pred CC--ceeEecccccccCcccCcHHHHHHHHHHHHHHHHHHHhcCeeeecccccceeeHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88 678884 5678777543 3222 23458999999999999999999999999999999999999999988876544
Q ss_pred HHHHHhhhhhhcccCCCccccCCCCcccCCC---CcccccccchhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCC
Q 001203 397 RRYKANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGAS 473 (1124)
Q Consensus 397 ~~~~~~~~~~~~d~~~~~~L~s~~s~~~l~~---~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~ 473 (1124)
.............+.+ +..+++.+ .++...|+.++|.||++|||||+..||++.|+++|+.|++++++++
T Consensus 347 ~~~~~lr~~~~~~D~~-------~~shPI~~~~~~ei~~~f~~i~Y~KGa~vLrML~~~lGde~F~~gLr~Yl~~~~~~n 419 (889)
T 3ebh_A 347 SHVDLLRSVQFLEDSS-------PLSHPIRPESYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNT 419 (889)
T ss_dssp HHHHHHHHHHHHHHTS-------TTCCCSSCSEESCGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHhhhhccC-------ccCCCCCCcchhhhhhhccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCCC
Confidence 3322111110111111 11223321 2345678999999999999999999999999999999999999985
Q ss_pred CCCCCCHHHHHHHHHHhcC----CCCcCHHHHHHHHHcCCCcceEEEEEEEeccccEEEEEEEeeccCCCCCCCCccCCC
Q 001203 474 PVRTLSTKEFRHFANKVGN----LERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSN 549 (1124)
Q Consensus 474 ~~~~lst~~F~~l~e~vs~----~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~~~~~~~~~~~ 549 (1124)
++++||++.+++++. ..|.||.. |++|++++|+|+++|+.+|+.+++.++++|+|......
T Consensus 420 ----att~Df~~ale~as~~~~~~~g~dL~~-f~~Wl~q~G~P~l~V~~~~d~~~~~~~ltl~Q~~~~~~---------- 484 (889)
T 3ebh_A 420 ----ATCEDFNYAMEQAYKMKKADNSANLNQ-YLLWFSQSGTPHVSFKYNYDAEKKQYSIHVNQYTKPDE---------- 484 (889)
T ss_dssp ----ECHHHHHHHHHHHHHHHHTCTTCCCTG-GGHHHHCCSCCEEEEEEEEETTTTEEEEEEEEECCCCS----------
T ss_pred ----CCHHHHHHHHHHHhhhccCCCCCCHHH-HHHHhcCCCCceEEEEEeecCCCCEEEEEEEEecCCCC----------
Confidence 799999999998871 01357876 68999999999999999999877888899988753211
Q ss_pred CCCCCCCCCCCcceeEEEEEEcc-CCc-c--ccccccCCCCceEEEeeeccchhhHhhhcCCCCCCCCCCCCCCCCcccc
Q 001203 550 TDSENRDGDIGWPGMMSIRVHEL-DGM-Y--DHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAG 625 (1124)
Q Consensus 550 ~~~~~~~~~~~~~gpmtIri~E~-DGt-~--eh~v~~i~~~~~~~~ei~~~sKy~~~R~~k~kk~~~~~~~~~~~d~~~~ 625 (1124)
.......|..|++|.+... +|. . .++ +.+. +.-+.|.++.
T Consensus 485 ----~~~~~~~~~IPl~v~l~~~~~G~~~~~~~~-l~l~-~~~q~f~~~~------------------------------ 528 (889)
T 3ebh_A 485 ----NQKEKKPLFIPISVGLINPENGKEMISQTT-LELT-KESDTFVFNN------------------------------ 528 (889)
T ss_dssp ----SCSSCCCCCEEEEEEEECTTTCCBCSCCEE-EEEC-SSEEEEEESC------------------------------
T ss_pred ----CCCCCceEEEEEEEEEEeCCCCccccceeE-EEec-CCcEEEEEcC------------------------------
Confidence 0012346999999999887 775 2 222 1121 1122232210
Q ss_pred ccccccCCCCceEEEEcCCCcEEEEEccCCCHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 001203 626 LDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (1124)
Q Consensus 626 ~d~~~~~~~p~~WIRiDpd~ewl~~v~~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~ 682 (1124)
..+++ |.-++++|.-..+++.+.++.++..||++|.|..+|.||++.|..
T Consensus 529 ------~~~~p-~~sl~r~fsa~v~l~~~~~~~~l~~l~~~d~d~~~r~~a~~~l~~ 578 (889)
T 3ebh_A 529 ------IAVKP-IPSLFRGFSAPVYIEDQLTDEERILLLKYDSDAFVRYNSCTNIYM 578 (889)
T ss_dssp ------CCSCC-EEEESTTCCSSSEEECCCCHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred ------CCCCC-eEEEcCCCCceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 01122 446999999999999999999999999999999999999999975
No 3
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=100.00 E-value=1.7e-68 Score=682.92 Aligned_cols=601 Identities=17% Similarity=0.202 Sum_probs=426.3
Q ss_pred CCCCCCeEEEEEEEEEEEECCCcEEEEEEEEEEEe-CCccEEEEEcCCceeEEEEEcCeeeeeeecCCCcccchhhhhhc
Q 001203 13 KVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWR 91 (1124)
Q Consensus 13 ~~~~~~~~~~Hy~l~L~id~~~~~~~G~v~Iti~~-~~l~~I~L~a~~L~I~~V~Vng~~~~f~~~~~~~~~~~~~~~~~ 91 (1124)
++....++|.||+|.|++|+++.+|+|.|+|++.+ .+++.|.||+++|+|.+|.|++.......... ..+ . .
T Consensus 67 ~RLP~~v~P~hY~L~L~~~~~~~~f~G~v~I~~~~~~~t~~I~Lh~~~L~I~~v~v~~~~~~~~~~~~--~~~--~--~- 139 (967)
T 3se6_A 67 LRLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPG--KEL--K--V- 139 (967)
T ss_dssp SSCCTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSCCSEEEEECSSCEEEEEEEEECC---CCSSC--EEC--E--E-
T ss_pred ccCCCCceEEEEEEEEEEeCCCCEEEEEEEEEEEEEcCCCEEEEECCCCEEEEEEEeccCCccccccc--cee--e--e-
Confidence 57778999999999999999999999999999987 46899999999999999998632210000000 000 0 0
Q ss_pred ccccCCChhhhHHHHHHHHhhhcCCcCcEEEEcCCCCCCccccccceeeeEEEeeecccccc-ceeEEEEEEEecccccc
Q 001203 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN-VKLVRIDYWVEKVEVGI 170 (1124)
Q Consensus 92 ~lv~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~v~i~y~~~~p~~Gi 170 (1124)
........+.|.++. .++.|. .+++ .+.|+|.+... .|+++..|... +|.
T Consensus 140 --------------------~~~~~~~~l~i~l~~---~L~~g~-~~~l--~i~y~g~~~~~~~G~y~s~y~~~---~g~ 190 (967)
T 3se6_A 140 --------------------LSYPAHEQIALLVPE---KLTPHL-KYYV--AMDFQAKLGDGFEGFYKSTYRTL---GGE 190 (967)
T ss_dssp --------------------EEEGGGTEEEEECSS---CCCTTC-CEEE--EEEEEEECBSSSSEEEEEEEECT---TSC
T ss_pred --------------------EEecCCCEEEEEcCC---ccCCCC-eEEE--EEEEEEecCCCccceeeeeeEcC---CCc
Confidence 000011247776543 344443 2344 57889987653 48888888642 342
Q ss_pred eeecceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCccceeeeecCCCCCeEEEEEccCCcchHhHHh
Q 001203 171 HFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITL 250 (1124)
Q Consensus 171 ~F~~~~~~T~~ep~~AR~wFPC~D~P~~Katf~L~ItvP~~~~avSnG~L~~~~~~~~~~~~kt~~F~~t~P~s~yliaf 250 (1124)
..++++||+||.+||+||||+|+|+.||+|+|+|++|++|+|+|||++.++.. .++++++++|+.++|||+|++||
T Consensus 191 --~~~~~~Tq~ep~~AR~~FPC~DeP~~KAtf~itI~~p~~~~alSN~~~~~~~~--~~~g~~~~~F~~t~pmstYLva~ 266 (967)
T 3se6_A 191 --TRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIE--LEGGLLEDHFETTVKMSTYLVAY 266 (967)
T ss_dssp --EEEEEEEECTTTTGGGTSCBCCSTTCCBEEEEEEEECTTCEEEESSCEEEEEE--CTTSCEEEEECCCCSBCGGGCCE
T ss_pred --eEEEEEEecccCCCCeEEEecCCcCceeEEEEEEEECCCcEEEeCCCccccee--cCCCeEEEEEecCCCccceeEEE
Confidence 24678999999999999999999999999999999999999999999976543 45689999999999999999999
Q ss_pred hccCceEeecC--CCCceEEEecCChhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCcccccccccceeeee
Q 001203 251 AVAPFEVLPDH--HQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF 328 (1124)
Q Consensus 251 aVG~F~~~~~~--~~~~v~~y~~P~~~~~~~~tl~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gagLii~ 328 (1124)
+||+|+.++.. .+.++++|++|+..+.++++++.+.++++|||++||+||||+||++|++|++..++|+++ ||+++
T Consensus 267 ~vg~f~~~~~~~~~gv~v~v~~~p~~~~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vPdf~~GaMEn~--Glity 344 (967)
T 3se6_A 267 IVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENW--GLITY 344 (967)
T ss_dssp EEECCEEEEEECTTCCEEEEEECGGGGGGGHHHHHHHHHHHHHHHHHHTCCCCSSEEEEEEESSCSSSEECCT--TEEEE
T ss_pred EEeceEEEEeecCCCcEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccEEEecCCCCcccccC--Ccccc
Confidence 99999998753 467899999999999999999999999999999999999999999999997667788888 68899
Q ss_pred -ccccccCccccchh--hhhHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHhhhh
Q 001203 329 -SSQILYDEKVIDQA--IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAV 405 (1124)
Q Consensus 329 -s~~lL~~~~~id~~--~~~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~ry~~~~~~~~~ 405 (1124)
++.+|++++..+.. .....+||||+|||||||+||++||+|+|||||||+|++++++++.+|.....-.........
T Consensus 345 ~e~~ll~d~~~s~~~~k~~~~~vIaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~p~~~~~~~~~~~~~~a 424 (967)
T 3se6_A 345 RETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYFLNVCFEV 424 (967)
T ss_dssp EGGGTCCCTTTCCHHHHHHHHHHHHHHHGGGTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHHH
T ss_pred chhheecCcccCCHHhhHhHHHHHHHHHHHHHhcCccccCCCccccHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 45688888754322 233468999999999999999999999999999999999999999988754310001111111
Q ss_pred hhcccCCCccccCCCCcccCC-CCcccccccchhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCCCCCCCCHHHHH
Q 001203 406 CKADDSGATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFR 484 (1124)
Q Consensus 406 ~~~d~~~~~~L~s~~s~~~l~-~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~~lst~~F~ 484 (1124)
...|.. ..+.|...++. +.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ ++++||+
T Consensus 425 l~~D~~----~~~~Pi~~~v~~~~~i~~~Fd~i~Y~KGa~vL~mL~~~lG~e~F~~gLr~Yl~~~~~~n----at~~Dl~ 496 (967)
T 3se6_A 425 ITKDSL----NSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRN----AKNDDLW 496 (967)
T ss_dssp HTTTTS----TTCCCSSCCCCSHHHHHHTSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTEE----ECHHHHH
T ss_pred HHhhcc----cCCCCceeecCCHHHHHHhcchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCC----CCHHHHH
Confidence 111110 01111111222 12345689999999999999999999999999999999999999985 6999999
Q ss_pred HHHHHhcC------------------------CCCcCHHHHHHHHHcCCCcceEEEEEEEeccccEEEEEEEeeccCCCC
Q 001203 485 HFANKVGN------------------------LERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPD 540 (1124)
Q Consensus 485 ~l~e~vs~------------------------~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~~ 540 (1124)
+.++++.. .++.|+++||++|++++|+|+++|+.+ .+.+.++|+|+......
T Consensus 497 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dv~~~m~~W~~q~G~Pvl~V~~~----~~~~~l~Q~rf~~~~~~ 572 (967)
T 3se6_A 497 SSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVKQD----GCSLRLQQERFLQGVFQ 572 (967)
T ss_dssp HHHHCC-------------------------CCCCCCHHHHHHHHHHSCSCEEEEEEEE----TTEEEEEEEECCCC---
T ss_pred HHHHHHhhhccccccccccccccccccccccccCCcCHHHHHHHHhcCCCCcEEEEEec----CCEEEEEeeeecCCCCC
Confidence 99988521 146799999999999999999999872 34678888876532110
Q ss_pred CCCCccCCCCCCCCCCCCCCcceeEEEEEEccCCccccccccCCCCceEEEeeeccchhhHhhhcCCCCCCCCCCCCCCC
Q 001203 541 SRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNG 620 (1124)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~gpmtIri~E~DGt~eh~v~~i~~~~~~~~ei~~~sKy~~~R~~k~kk~~~~~~~~~~~ 620 (1124)
.. ++.........|+.|+++.... +++.....+ .... ..
T Consensus 573 ~~-------~~~~~~~~~~~W~IPl~~~~~~-~~~~~~~~l--~~~~-~~------------------------------ 611 (967)
T 3se6_A 573 ED-------PEWRALQERYLWHIPLTYSTSS-SNVIHRHIL--KSKT-DT------------------------------ 611 (967)
T ss_dssp ---------------CCSCCCCCCEEEEESS-CCCCEEECC--CSSE-EE------------------------------
T ss_pred Cc-------cccccccCCceEEEEEEEEeCC-CCccceEEe--cCCc-eE------------------------------
Confidence 00 0000001234799999886542 222111110 0000 00
Q ss_pred CccccccccccCCCCceEEEEcCCCcEEEEEccCCC-HHHHHHHHhhCC---CcHHHHHHH---HHHHhCCCCcHhHHHH
Q 001203 621 DAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQP-VQMWINQLEKDG---DVVAQAQAI---AALEALPHLSFNVVNT 693 (1124)
Q Consensus 621 d~~~~~d~~~~~~~p~~WIRiDpd~ewl~~v~~~qp-~~m~~~QL~~dr---DV~aQ~eAi---~~L~~~~~~s~~~~~~ 693 (1124)
+ + ..++.+||.++++..=..+|+.+.. ......||+.+. ++..|..-| -+|+.....+....--
T Consensus 612 --i---~----~~~~~~wi~~N~~~~GyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~~~la~~g~~~~~~~l~ 682 (967)
T 3se6_A 612 --L---D----LPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKALD 682 (967)
T ss_dssp --E---E----CSSCCSCEEESGGGCSSCEEEEETTHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred --E---e----ccCCCceEEEeCCccEEEEEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 0 0 0123479999999999999999876 455666786543 566555433 3454433333332223
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHcc
Q 001203 694 LNNFLSDSKAFWRVRIEAAYALANT 718 (1124)
Q Consensus 694 L~~~l~d~~~Fy~VR~~Aa~aLa~~ 718 (1124)
|.+.|.+|. =|-+=..|...|..+
T Consensus 683 l~~~l~~E~-~~~~w~~a~~~l~~l 706 (967)
T 3se6_A 683 MTYYLQHET-SSPALLEGLSYLESF 706 (967)
T ss_dssp HTTGGGTCC-CHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC-cHHHHHHHHHHHHHH
Confidence 456677765 334445555555543
No 4
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=100.00 E-value=4.7e-68 Score=673.00 Aligned_cols=540 Identities=15% Similarity=0.162 Sum_probs=402.8
Q ss_pred CCCeEEEEEEEEEEEECCCcEEEEEEEEEEEeCCccEEEEEcCCceeEEEEEcCeeeeeeecCCCcccchhhhhhccccc
Q 001203 16 NSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVS 95 (1124)
Q Consensus 16 ~~~~~~~Hy~l~L~id~~~~~~~G~v~Iti~~~~l~~I~L~a~~L~I~~V~Vng~~~~f~~~~~~~~~~~~~~~~~~lv~ 95 (1124)
.+++.+.||+|++++++++.+++|.++|+.. .+++.|.||+++ +|++|++||.++.|+..+.
T Consensus 13 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~-~~~~~i~Ld~~~-~I~sv~v~g~~~~~~~~~~---------------- 74 (867)
T 2gtq_A 13 TPAYHILKTDLHFDINEPQTVVKSRLTVEPQ-RVGEPLVLDGSA-KLLSVKINGAAADYVLEGE---------------- 74 (867)
T ss_dssp CCSEEEEEEEEEEEECSSCEEEEEEEEEEES-STTSCEEEECCS-EEEEEEETTEECCCEEETT----------------
T ss_pred CCCCceeEEEEEEEEECCcEEEEEEEEEEEe-CCCCEEEEecCC-CEEEEEECCeecceEeeCC----------------
Confidence 4578999999999999999999998888753 336789999999 9999999998876654321
Q ss_pred CCChhhhHHHHHHHHhhhcCCcCcEEEEcCCCCCCccccccceeeeEEEeeeccccccceeEEEEEEEecccccceeecc
Q 001203 96 SPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGN 175 (1124)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v~i~y~~~~p~~Gi~F~~~ 175 (1124)
.|.|. + ++.+ .++++ +.|.+.+..+ .+..|+++.+.
T Consensus 75 -----------------------~L~I~---~---lp~g--~~~l~--I~y~~~p~~~-----------~~~~Gly~s~~ 110 (867)
T 2gtq_A 75 -----------------------TLTIA---G---VPSE--RFTVE--VETEILPAEN-----------KSLMGLYASGG 110 (867)
T ss_dssp -----------------------EEEES---C---CCSS--CEEEE--EEEEECGGGC-----------CSCSEEEEETT
T ss_pred -----------------------EEEEE---e---cCCC--cEEEE--EEEEEeccCC-----------CCCcEEEEECC
Confidence 36663 1 1212 23443 3444433211 11234444455
Q ss_pred eEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCC-c-EEEecCccceeeeecCCCCCeEEEEEccCCcchHhHHhhcc
Q 001203 176 ALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVA 253 (1124)
Q Consensus 176 ~~~T~~ep~~AR~wFPC~D~P~~Katf~L~ItvP~~-~-~avSnG~L~~~~~~~~~~~~kt~~F~~t~P~s~yliafaVG 253 (1124)
+++|||||.+||+||||+|+|+.||+|+++|++|++ | +++|||+++++.. .++++++++|+.++|||+|++||+||
T Consensus 111 ~~~Tq~ep~~AR~~fPc~DeP~~katf~itIt~p~~~y~~~lSNg~l~~~~~--~~~g~~~~~f~~t~pmstYL~A~~vG 188 (867)
T 2gtq_A 111 NLFTQCEPEGFRKITFYIDRPDVMSKFTTTIVADKKRYPVLLSNGNKIDGGE--FSDGRHWVKWEDPFSKPSYLFALVAG 188 (867)
T ss_dssp EEEEECTTTTGGGTSCBCCSTTCCBEEEEEEEEETTTCCEEEESSEEEEEEE--CTTSEEEEEEECCSCBCGGGCCEEEE
T ss_pred EEEEeeccCCCceeeccCCCCCcceEEEEEEEEccccceEEEeCCcccccee--ecCCeEEEEEEeCCCccccceeEEEe
Confidence 789999999999999999999999999999999997 6 9999999987643 35678999999999999999999999
Q ss_pred CceEeecC----C--CCceEEEecCChhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCcccccccccceeee
Q 001203 254 PFEVLPDH----H--QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGI 327 (1124)
Q Consensus 254 ~F~~~~~~----~--~~~v~~y~~P~~~~~~~~tl~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gagLii 327 (1124)
+|+.+++. . +.++++|+.|+..+.++++++.++++++|||++||++|||++|++|++|++..++|+++ |+++
T Consensus 189 ~f~~~~~~~~t~~g~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~k~d~Vavpdf~~GaMEn~--glit 266 (867)
T 2gtq_A 189 DLAVTEDYFTTMSGRNVKIEFYTTEADKPKVGFAVESLKNAMKWDETRFGLEYDLDIFMVVAVGDFNMGAMENK--GLNI 266 (867)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEECTTTGGGCHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESSCSSSEECCT--TEEE
T ss_pred cceEeeeceeccCCCceEEEEEeccccHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEcCCCCccccccC--Ccee
Confidence 99998762 1 25799999999999999999999999999999999999999999999997656788887 6888
Q ss_pred ec-cccccCccccc-hhh-hhHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHhhh
Q 001203 328 FS-SQILYDEKVID-QAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCA 404 (1124)
Q Consensus 328 ~s-~~lL~~~~~id-~~~-~~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~ry~~~~~~~~ 404 (1124)
|+ +.+|++++... ... ....+||||+|||||||+|||+||+|+|||||||+|++.+|.++..|....++........
T Consensus 267 f~e~~ll~~~~~~~~~~~~~i~~vIaHElAHqWfGnlVT~~~W~dlWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~l~~ 346 (867)
T 2gtq_A 267 FNTKFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRAVRRIENIRLLRQ 346 (867)
T ss_dssp EEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ecccccccCcccCcHHHHHHHHHHHHHHHHHHhcCcEEEecccccccchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 84 56777775432 222 2346899999999999999999999999999999999999999887765433322111111
Q ss_pred hhhcccCCCccccCCCCcccCC---CCcccccccchhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCCCCCCCCHH
Q 001203 405 VCKADDSGATALSSSASCKDLY---GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTK 481 (1124)
Q Consensus 405 ~~~~d~~~~~~L~s~~s~~~l~---~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~~lst~ 481 (1124)
.....+.+ +..+++. ..++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ ++++
T Consensus 347 ~~~~~D~~-------~~~~Pi~~~~~~~i~~~f~~i~Y~KGa~vl~mL~~~lG~e~F~~glr~Yl~~~~~~~----~t~~ 415 (867)
T 2gtq_A 347 HQFPEDAG-------PTAHPVRPASYEEMNNFYTMTVYEKGAEVVRMYHTLLGEEGFQKGMKLYFQRHDGQA----VTCD 415 (867)
T ss_dssp HHHHHHHS-------TTCCCSSCSEESCGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE----ECHH
T ss_pred HhhhhccC-------ccCCCCcCCChhhhhhhccchhhhHHHHHHHHHHHHHCHHHHHHHHHHHHHHhCCCC----CCHH
Confidence 00111111 1112221 12345678889999999999999999999999999999999999885 7999
Q ss_pred HHHHHHHHhcCCCCcCHHHHHHHHHcCCCcceEEEEEEEeccccEEEEEEEeeccCCCCCCCCccCCCCCCCCCCCCCCc
Q 001203 482 EFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGW 561 (1124)
Q Consensus 482 ~F~~l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (1124)
||++.+++++| .|+.+| ++|++++|+|.++|+..|+++ .++++++|...... . ......|
T Consensus 416 Df~~~l~~~sg---~dl~~f-~~W~~q~G~P~l~v~~~~~~~--~~~l~l~Q~~~~~~-----------~---~~~~~~~ 475 (867)
T 2gtq_A 416 DFRAAMADANG---INLDQF-ALWYSQAGTPVLEAEGRLKNN--IFELTVKQTVPPTP-----------D---MTDKQPM 475 (867)
T ss_dssp HHHHHHHHHHT---CCCGGG-GHHHHCCSCCEEEEEEEEETT--EEEEEEEEECCCBT-----------T---BSCCCCC
T ss_pred HHHHHHHHHhC---CCHHHH-HHHhcCCCCceEEEEEEecCC--EEEEEEEEecCCCC-----------C---CCCCceE
Confidence 99999999984 688885 799999999999999998544 45566666532100 0 0123369
Q ss_pred ceeEEEEEEccCCccccccccCCCCc--eEEEeeeccchhhHhhhcCCCCCCCCCCCCCCCCccccccccccCCCCceEE
Q 001203 562 PGMMSIRVHELDGMYDHPILPMAGDA--WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWI 639 (1124)
Q Consensus 562 ~gpmtIri~E~DGt~eh~v~~i~~~~--~~~~ei~~~sKy~~~R~~k~kk~~~~~~~~~~~d~~~~~d~~~~~~~p~~WI 639 (1124)
.+|+++.+.+.||.- ++. .+.++. ...+.+. . .+.... +... .+. -|+
T Consensus 476 ~iPi~~~~~~~~g~~-~~~-~~~~~~~~~~~~~l~-----------~---------~~~~~~-~~~~-----~~~--p~~ 525 (867)
T 2gtq_A 476 MIPVKVGLLNRNGEA-VAF-DYQGKRATEAVLLLT-----------E---------AEQTFL-LEGV-----TEA--VVP 525 (867)
T ss_dssp CEEEEEEEECTTCCB-CCE-ECSSCEESCEEEEEC-----------S---------SEEEEE-EBCC-----CSC--CEE
T ss_pred EEEEEEEEEcCCCcc-ccc-ccccccccceEEEEc-----------C---------CceEEE-EeCC-----CCC--Cce
Confidence 999999998878762 111 011211 0111110 0 000000 1000 112 369
Q ss_pred EEcCCCcEEEEEccCCCHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 001203 640 RADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (1124)
Q Consensus 640 RiDpd~ewl~~v~~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~ 682 (1124)
.++++|....+++.++++.+|..||.+|+|..+|.+|++.|.+
T Consensus 526 ~l~r~fs~~~~l~~~~~~~~l~~l~~~~~d~~~R~~a~~~L~~ 568 (867)
T 2gtq_A 526 SLLRGFSAPVHLNYPYSDDDLLLLLAHDSDAFTRWEAAQTLYR 568 (867)
T ss_dssp EESTTCCSSCEEECCCCHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred EecCCCCccEEEECCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 9999999889999999999999999999999999999766654
No 5
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=100.00 E-value=1.5e-67 Score=673.79 Aligned_cols=588 Identities=15% Similarity=0.206 Sum_probs=422.1
Q ss_pred CCCCCCCeEEEEEEEEEEEECCCcEEEEEEEEEEEe-CCccEEEEEcCCceeEEEEEcCe---eeeeeecCCCcccchhh
Q 001203 12 TKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGE---PTEFEYYPHNHQNVENE 87 (1124)
Q Consensus 12 p~~~~~~~~~~Hy~l~L~id~~~~~~~G~v~Iti~~-~~l~~I~L~a~~L~I~~V~Vng~---~~~f~~~~~~~~~~~~~ 87 (1124)
.++....+.|.||+|+|++|+++.+|.|.++|++.+ .+++.|.||+++|+|.+|+|+|. ++.+.....
T Consensus 6 ~~rLp~~~~p~hY~l~L~~d~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~v~~~~~~~~~~~~~~~-------- 77 (897)
T 2xdt_A 6 KIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGAGERLSEEPLQV-------- 77 (897)
T ss_dssp CSSCCSSEEEEEEEEEEEEETTTTEEEEEEEEEEEESSCEEEEEEECSSCEEEEEEEEEC----CEEEECEE--------
T ss_pred cCcCCCCcEeeEEEEEEEEecCCCeEEEEEEEEEEEEcCCCEEEEEeCCCEEEEEEEEecCCccccccccee--------
Confidence 466778999999999999999999999999999987 46789999999999999999642 221111000
Q ss_pred hhhcccccCCChhhhHHHHHHHHhhhcCCcCcEEEEcCCCCCCccccccceeeeEEEeeecccccc-ceeEEEEEEEecc
Q 001203 88 KRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN-VKLVRIDYWVEKV 166 (1124)
Q Consensus 88 ~~~~~lv~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~v~i~y~~~~p 166 (1124)
........|.|.++. .+..|. .+++ .+.|+|.+... .|+++..|...
T Consensus 78 ------------------------~~~~~~~~l~i~l~~---~L~~g~-~~~L--~i~y~g~~~~~~~G~y~s~y~~~-- 125 (897)
T 2xdt_A 78 ------------------------LEHPRQEQIALLAPE---PLLVGL-PYTV--VIHYAGNLSETFHGFYKSTYRTK-- 125 (897)
T ss_dssp ------------------------EEETTTTEEEEEEEE---EECTTC-CEEE--EEEEEEECBSSSSEEEEEEEECT--
T ss_pred ------------------------EEcCCCcEEEEEeCC---ccCCCC-EEEE--EEEEEEEeCCCCceeEeeeeecC--
Confidence 000012247776532 232332 2344 56888887543 58888888632
Q ss_pred cccceeecceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCccceeeeecCCCCCeEEEEEccCCcchH
Q 001203 167 EVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAK 246 (1124)
Q Consensus 167 ~~Gi~F~~~~~~T~~ep~~AR~wFPC~D~P~~Katf~L~ItvP~~~~avSnG~L~~~~~~~~~~~~kt~~F~~t~P~s~y 246 (1124)
+|- ..++++||+||.+||+||||+|+|+.||+|+|+|++|++|+|+|||+++++.. .++++++++|+.++|||+|
T Consensus 126 -~g~--~~~~~~Tq~ep~~AR~~fPc~DeP~~Katf~itI~~p~~~~alSN~~~~~~~~--~~~g~~~~~f~~t~pmstY 200 (897)
T 2xdt_A 126 -EGE--LRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVT--VAEGLIEDHFDVTVKMSTY 200 (897)
T ss_dssp -TSC--EEEEEEEECTTTTHHHHSCBCCSTTSCBEEEEEEEECTTCEEEESSCEEEEEE--EETTEEEEEECCCCSBCGG
T ss_pred -CCc--eeEEEEecceecccceEEeccCCccccCeEEEEEEEcCCceEecCCCccceEe--cCCCEEEEEEeCCCccchh
Confidence 342 13578999999999999999999999999999999999999999999987543 2457899999999999999
Q ss_pred hHHhhccCceEeec--CCCCceEEEecCChhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCcccccccccce
Q 001203 247 WITLAVAPFEVLPD--HHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAA 324 (1124)
Q Consensus 247 liafaVG~F~~~~~--~~~~~v~~y~~P~~~~~~~~tl~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gag 324 (1124)
++||+||+|+.++. ..+.++++|++|+..+.++++++.+.++++||+++||+||||+||++|++|++..++|+++ |
T Consensus 201 L~a~~vg~f~~~~~~~~~gv~v~v~~~~~~~~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vpdf~~GaMEn~--g 278 (897)
T 2xdt_A 201 LVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENW--G 278 (897)
T ss_dssp GCCEEEECCEEEEEECTTCCEEEEEECTTTGGGCHHHHHHHHHHHHHHHHHTTCCCCSSEEEEEEESSCSSSEECCT--T
T ss_pred heEEEEEcceeeccccCCCeeEEEEcCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCccceeEEEeCCCcccchhcC--C
Confidence 99999999999876 3457899999999999999999999999999999999999999999999997666788887 6
Q ss_pred eeeec-cccccCccccchh--hhhHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHhCChHH--HHHHH
Q 001203 325 MGIFS-SQILYDEKVIDQA--IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEA--RYRRY 399 (1124)
Q Consensus 325 Lii~s-~~lL~~~~~id~~--~~~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~--ry~~~ 399 (1124)
+++++ +.+|++++..+.. .....+||||+|||||||+|||+||+|+|||||||+|++++++++.+|+... .| .
T Consensus 279 lit~~e~~ll~~~~~~~~~~~~~~~~viaHElAHqWFGnlVT~~~W~dlWLnEGfAty~e~~~~~~~~~~~~~~~~f-~- 356 (897)
T 2xdt_A 279 LTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF-F- 356 (897)
T ss_dssp EEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHCGGGCGGGGH-H-
T ss_pred eeEEeeeeEeECCCCCcHHHHHHHHHHHHHHHHHHHcCCEeccCCcchhhhhHHHHHHHHHHHHHHhCCcchHHHHH-H-
Confidence 88995 5688988765432 2334589999999999999999999999999999999999999999886432 22 1
Q ss_pred HHhhhhhhcccCCCccccCCCCcccCC-CCcccccccchhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCCCCCCC
Q 001203 400 KANCAVCKADDSGATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTL 478 (1124)
Q Consensus 400 ~~~~~~~~~d~~~~~~L~s~~s~~~l~-~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~~l 478 (1124)
......+..|... .+.|...++. +.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ +
T Consensus 357 ~~~~~a~~~D~~~----~~~Pi~~~v~~p~~i~~~fd~i~Y~KGa~vl~mL~~~lG~e~F~~gl~~Yl~~~~~~~----a 428 (897)
T 2xdt_A 357 GKCFDAMEVDALN----SSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKN----T 428 (897)
T ss_dssp HHHHHHHHHHTST----TCCCSSCCCCSHHHHHHTSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTEE----E
T ss_pred HHHHHHHHhhccc----CCCCCEEeCCCHHHHHHhcchhhhhhHHHHHHHHHHHhCHHHHHHHHHHHHHHhccCC----C
Confidence 1111111112110 1111112222 12344679999999999999999999999999999999999999985 7
Q ss_pred CHHHHHHHHHHhcC---------------C-C--------CcCHHHHHHHHHcCCCcceEEEEEEEeccccEEEEEEEee
Q 001203 479 STKEFRHFANKVGN---------------L-E--------RPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRD 534 (1124)
Q Consensus 479 st~~F~~l~e~vs~---------------~-~--------g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~ 534 (1124)
+++||++.++++.. . + +.|+++||++|++++|+|+++|+++ ++.+.++|+|+
T Consensus 429 ~~~Dl~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~g~dl~~~~~~W~~q~G~P~l~v~~~----~~~~~l~Q~~f 504 (897)
T 2xdt_A 429 KNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITITVR----GRNVHMKQEHY 504 (897)
T ss_dssp CHHHHHHHHHTC----------------------------CCCHHHHHHHHHSSCSEEEEEEEEE----TTEEEEEEEEE
T ss_pred CHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCHHHHHHHhhcCCCceEEEEEEc----CCEEEEEEEEe
Confidence 99999999987511 1 1 5799999999999999999999875 24567777765
Q ss_pred ccCCCCCCCCccCCCCCCCCCCCCCCcceeEEEEEEccCCccccccccCCCCceEEEeeeccchhhHhhhcCCCCCCCCC
Q 001203 535 CTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPD 614 (1124)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpmtIri~E~DGt~eh~v~~i~~~~~~~~ei~~~sKy~~~R~~k~kk~~~~~ 614 (1124)
..... .+ ......|..|+++... .++.. + ++-+...+.
T Consensus 505 ~~~~~----------~~---~~~~~~w~iPi~~~~~-~~~~~-~-----------~~~l~~~~~---------------- 542 (897)
T 2xdt_A 505 MKGSD----------GA---PDTGYLWHVPLTFITS-KSDMV-H-----------RFLLKTKTD---------------- 542 (897)
T ss_dssp CCC------------------CCCCCCCEEEEEEES-SCSSC-E-----------EEEECSSEE----------------
T ss_pred ecCCC----------CC---CCCCceEEEEEEEEeC-CCCcc-c-----------eEEecCCce----------------
Confidence 42210 00 0123479999998532 11111 1 111110000
Q ss_pred CCCCCCCccccccccccCCCCceEEEEcCCCcEEEEEccCCCH-HHHHHHHhhCC---CcHHHH---HHHHHHHhCCCCc
Q 001203 615 GCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPV-QMWINQLEKDG---DVVAQA---QAIAALEALPHLS 687 (1124)
Q Consensus 615 ~~~~~~d~~~~~d~~~~~~~p~~WIRiDpd~ewl~~v~~~qp~-~m~~~QL~~dr---DV~aQ~---eAi~~L~~~~~~s 687 (1124)
.+ . ...+..||.++++..-..+|+.+... .....+|+.+. ++..|. ..+-+|.+....+
T Consensus 543 -------~~-~------~~~~~~~i~~N~~~~gyyrV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~~~la~~g~~~ 608 (897)
T 2xdt_A 543 -------VL-I------LPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLS 608 (897)
T ss_dssp -------EE-E------CSSCCSCEEESGGGCSSCEEEECTTHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHTTTSSC
T ss_pred -------EE-E------ccCCCceEEECCCceEEEEEEcCHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence 01 0 01235799999999999999998754 45667787655 665553 3344555433333
Q ss_pred HhHHHHHHHHhcCCCchhhHHHHHHHHHHc
Q 001203 688 FNVVNTLNNFLSDSKAFWRVRIEAAYALAN 717 (1124)
Q Consensus 688 ~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~ 717 (1124)
....--|.+.|.+|. =|-|-..|...|..
T Consensus 609 ~~~~l~l~~~l~~E~-~~~~w~~~~~~l~~ 637 (897)
T 2xdt_A 609 IEKALDLSLYLKHET-EIMPVFQGLNELIP 637 (897)
T ss_dssp HHHHHHHHGGGGGCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence 332223446666654 34444444444443
No 6
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=100.00 E-value=5.7e-67 Score=669.94 Aligned_cols=590 Identities=15% Similarity=0.218 Sum_probs=410.7
Q ss_pred CCCCCCCeEEEEEEEEEEEECCC-----cEEEEEEEEEEEe-CCccEEEEEcCCceeEEE----EEcCe---e-e---ee
Q 001203 12 TKVENSGAVVRHQKLCLSIDMEK-----HQIYGYTELEIAV-PDIGIVGLHAENLGIESV----LVDGE---P-T---EF 74 (1124)
Q Consensus 12 p~~~~~~~~~~Hy~l~L~id~~~-----~~~~G~v~Iti~~-~~l~~I~L~a~~L~I~~V----~Vng~---~-~---~f 74 (1124)
.++....++|.||+|.|++|++. .+|+|.|+|++.+ .+++.|.||+++|+|.++ .+++. . . ..
T Consensus 8 ~yRLP~~v~P~hY~l~L~~~l~~~~~~~~~f~G~v~I~~~~~~~t~~I~Lh~~~L~i~~~~~~~~~~~~~~~~~~~~~~~ 87 (909)
T 4fke_A 8 RYRLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKKLNYTTQGHMVVLRGVGDSQVPEIDRT 87 (909)
T ss_dssp SSSCCSSEEEEEEEEEEEECCSCCSSSCCEEEEEEEEEEEESSCEEEEEEECCSCEECCSSSSCEEEESTTCCCCCEEEE
T ss_pred cccCcCCCEeEEEEEEEEEcCcCCCCCCceEEEEEEEEEEEecCCCEEEEEcCCCEEEeeeeEEEEecCCCcceecccce
Confidence 36788899999999999998753 5899999999987 478999999999999652 22211 0 0 01
Q ss_pred eecCCCcccchhhhhhcccccCCChhhhHHHHHHHHhhhcCCcCcEEEEcCCCCCCccccccceeeeEEEeeecccccc-
Q 001203 75 EYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN- 153 (1124)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~- 153 (1124)
++. .....|.|.++. .++.|. .+++ .+.|+|.+...
T Consensus 88 ~~~-------------------------------------~~~~~l~i~l~~---~l~~g~-~~~l--~i~y~g~~~~~~ 124 (909)
T 4fke_A 88 ELV-------------------------------------ELTEYLVVHLKG---SLQPGH-MYEM--ESEFQGELADDL 124 (909)
T ss_dssp EEE-------------------------------------TTTTEEEEEEEE---EECTTC-EEEE--EEEEEEECCSSS
T ss_pred EEe-------------------------------------cCCcEEEEEcCC---CcCCCC-EEEE--EEEEEEEECCCC
Confidence 110 112247776542 334443 2344 57889988764
Q ss_pred ceeEEEEEEEecccccceeecceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCccceeee-ecCCCCC
Q 001203 154 VKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVL-SKDDPPR 232 (1124)
Q Consensus 154 ~~~v~i~y~~~~p~~Gi~F~~~~~~T~~ep~~AR~wFPC~D~P~~Katf~L~ItvP~~~~avSnG~L~~~~~-~~~~~~~ 232 (1124)
.|+++..|... ..+ .++++|||||.+||+||||+|+|+.||||+|+|++|++|+|+|||+++++.. ..+++++
T Consensus 125 ~G~y~s~y~~~--~~~----~~~~~Tqfep~~AR~~FPc~DeP~~KAtf~i~i~~p~~~~alSN~~~~~~~~~~~~~~~~ 198 (909)
T 4fke_A 125 AGFYRSEYMEG--NVK----KVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNW 198 (909)
T ss_dssp SEEEEEEEEET--TEE----EEEEEEECTTTTGGGTSCBCCSTTSCBEEEEEEEEETTSEEEESSCBSSSCEECTTCTTE
T ss_pred eEEEEeeEEEC--Cce----EEEEEEcCcccCcCEEEEeCCccccceEEEEEEEECCCCEEEcCCcccccccceecCCCe
Confidence 48999988642 222 4688999999999999999999999999999999999999999999876543 2346789
Q ss_pred eEEEEEccCCcchHhHHhhccCceEeecCC--CCceEEEecCChhhh--HHHHHHHHHHHHHHHHHhcCCCCCCCCccEE
Q 001203 233 KTYVYRLDVPVSAKWITLAVAPFEVLPDHH--QSLMSHICLPANVSK--IHNTVEFFHNAFSHYETYLDAKFPFGSYKQV 308 (1124)
Q Consensus 233 kt~~F~~t~P~s~yliafaVG~F~~~~~~~--~~~v~~y~~P~~~~~--~~~tl~~~~~al~ffee~fG~~YPf~ky~~V 308 (1124)
++++|+.++|||+|++||+||+|+.++... +.++++|++|+..+. ..++++.+.++++|||++||+||||+||++|
T Consensus 199 ~~~~f~~t~pmstYL~a~~vg~f~~~~~~~~~g~~~~v~~~p~~~~~~~~~~al~~~~~~l~~~e~~~~~~Yp~~k~d~v 278 (909)
T 4fke_A 199 SVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHYNTSYPLPKSDQI 278 (909)
T ss_dssp EEEEBCCCCSBCGGGCCEEEESCEEEEEECTTSCEEEEEECHHHHHTTTTHHHHHHHHHHHHHHHHHTTSCCSSSEEEEE
T ss_pred EEEEEecCCCccceeeEEEecceEEEeeccCCCcEEEEEEecchhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccEE
Confidence 999999999999999999999999887643 578999999997654 5689999999999999999999999999999
Q ss_pred EeCCCcccccccccceeeee-ccccccCccccchhh--hhHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHH
Q 001203 309 FLAPEMAVSSSTFGAAMGIF-SSQILYDEKVIDQAI--DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFI 385 (1124)
Q Consensus 309 fVp~~~~~~~~~~gagLii~-s~~lL~~~~~id~~~--~~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~ 385 (1124)
++|++..++|+++ ||++| ++.+|++++...... ....+||||+|||||||+||++||+|+|||||||+|++++++
T Consensus 279 ~vpdf~~gaMEn~--glit~~e~~ll~d~~~s~~~~~~~~~~viaHElAHqWFGnlVT~~~W~dlWLnEGFAty~e~~~~ 356 (909)
T 4fke_A 279 ALPDFNAGAMENW--GLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGA 356 (909)
T ss_dssp EETTCTTCEECCT--TEEEEEHHHHCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHH
T ss_pred EecCCCCcccccC--cccccccceeecCcccCChHHHHHHHHHHHHHHHhhhhcCeecccccCcceeehHHHHHHHHHHH
Confidence 9998777888888 68888 556889887654332 234589999999999999999999999999999999999999
Q ss_pred HHHhCChHHH--HHHHHHhhhhhhccc-CCCccccCCCCcccCC-CCcccccccchhhhhHHHHHHHHHHHhChHHHHHH
Q 001203 386 KKFLGNNEAR--YRRYKANCAVCKADD-SGATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKI 461 (1124)
Q Consensus 386 ~~~~G~ne~r--y~~~~~~~~~~~~d~-~~~~~L~s~~s~~~l~-~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~ 461 (1124)
++.+|..... +.. .........|. ....++... ..++. +.++...|+.++|.||++|||||+..||++.|+++
T Consensus 357 ~~~~~~~~~~~~f~~-~~~~~~~~~d~~~~~~pi~~~--~~~v~~~~~i~~~fd~i~Y~KGa~vL~mL~~~lG~e~F~~g 433 (909)
T 4fke_A 357 DHAEPTWNLKDLIVP-GDVYRVMAVDALASSHPLTTP--AEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEG 433 (909)
T ss_dssp HHHSTTSCGGGGHHH-HTHHHHHHHHTSTTCCCSCCC--GGGCCSHHHHHTTSSHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HhccccccHHHhhhh-hHHHHHHHHhhhcccCCcccc--ccccCChhhHHhhhhhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9998875431 111 01111111111 111111110 01121 22455689999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCHHHHHHHHHHhcCCC-----CcCHHHHHHHHHcCCCcceEEEEEEEeccccEEEEEEEeecc
Q 001203 462 LQNIISRAQGASPVRTLSTKEFRHFANKVGNLE-----RPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT 536 (1124)
Q Consensus 462 L~~yl~~~~~~~~~~~lst~~F~~l~e~vs~~~-----g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~ 536 (1124)
|+.|++++++++ ++++||++.++++++.. +.++++||++|++++|+|+++|+.+ .. .++++|+..
T Consensus 434 l~~Yl~~~~~~n----a~~~Dl~~~l~~~s~~~~~~~~~~~v~~~~~~W~~q~G~Pvv~V~~~----~~--~~~q~~~~~ 503 (909)
T 4fke_A 434 LASYLHAFAYQN----TTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTK----TG--NISQKHFLL 503 (909)
T ss_dssp HHHHHHHHTTEE----ECHHHHHHHHHHHHHTCSSCCCSSCHHHHHHHHHSSCSCEEEEEETT----TT--EEEEEECCS
T ss_pred HHHHHHhhcccC----CCHHHHHHHHHHHhCcccccccchhHHhHhhCccccCCCcEEEEEec----cC--cEEEEEEEe
Confidence 999999999996 79999999998887532 2469999999999999999999642 22 256666543
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCCcceeEEEEEEccCCccccccccCCCCceEEEeeeccchhhHhhhcCCCCCCCCCCC
Q 001203 537 VKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGC 616 (1124)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~gpmtIri~E~DGt~eh~v~~i~~~~~~~~ei~~~sKy~~~R~~k~kk~~~~~~~ 616 (1124)
...... .........|..|++... +|..... .|. .+. .. .
T Consensus 504 ~~~~~~---------~~~~~~~~~w~IPl~~~~---~~~~~~~-------~~~-~~~---~~------------~----- 543 (909)
T 4fke_A 504 DSESNV---------TRSSAFDYLWIVPISSIK---NGVMQDH-------YWL-RDV---SQ------------A----- 543 (909)
T ss_dssp CTTCCC---------CSCCTTTTCCCEEECEEE---TTEECCC-------EEE-CSC---SE------------E-----
T ss_pred ccCCCC---------CCCCCCCceEEEEEEEEe---CCCccce-------EEe-ecc---cc------------c-----
Confidence 221100 001122346999997643 2221110 000 000 00 0
Q ss_pred CCCCCccccccccccCCCCceEEEEcCCCcEEEEEccCCC-HHHHHHHHhhCCCc---HHHHH---HHHHHHhCCCCcHh
Q 001203 617 DDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQP-VQMWINQLEKDGDV---VAQAQ---AIAALEALPHLSFN 689 (1124)
Q Consensus 617 ~~~~d~~~~~d~~~~~~~p~~WIRiDpd~ewl~~v~~~qp-~~m~~~QL~~drDV---~aQ~e---Ai~~L~~~~~~s~~ 689 (1124)
..+ + ....+-.||.++++..=..+|+.+.. ......+|+.+.+. ..|.. -+-+|+.....+..
T Consensus 544 --~~~-~-------~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~~~la~ag~~~~~ 613 (909)
T 4fke_A 544 --QND-L-------FKTASDDWVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVPVT 613 (909)
T ss_dssp --ECG-G-------GCCCTTCCEEESGGGCSSCEEEECHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred --eee-e-------ccCCCCCeEEECCCceEEEEEecCHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 000 0 00123479999999999999998764 33456778765443 22322 22334443223322
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHH
Q 001203 690 VVNTLNNFLSDSKAFWRVRIEAAYALA 716 (1124)
Q Consensus 690 ~~~~L~~~l~d~~~Fy~VR~~Aa~aLa 716 (1124)
..--|.+.|.++. =|-|-..|...|.
T Consensus 614 ~~l~l~~~l~~E~-~y~~w~~~~~~l~ 639 (909)
T 4fke_A 614 LALDNTLFLNGEK-EYMPWQAALSSLS 639 (909)
T ss_dssp HHHHTTGGGGGCC-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCc-cHHHHHHHHHHHH
Confidence 2222344555553 3344444444443
No 7
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=100.00 E-value=3.3e-67 Score=661.80 Aligned_cols=544 Identities=15% Similarity=0.208 Sum_probs=406.5
Q ss_pred eEEEEEEEEEEEECCCcEEEEEEEEEEEeCCccEEEEEcCCceeEEEEEcCeeeeeeecCCCcccchhhhhhcccccCCC
Q 001203 19 AVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPS 98 (1124)
Q Consensus 19 ~~~~Hy~l~L~id~~~~~~~G~v~Iti~~~~l~~I~L~a~~L~I~~V~Vng~~~~f~~~~~~~~~~~~~~~~~~lv~~~~ 98 (1124)
++|.||+|+|++|+++.+|.|.|+| . .+++.|.||+++|+|++|+++|.++.|++++.
T Consensus 1 v~p~hY~l~l~~~~~~~~f~G~v~I--~-~~~~~i~L~~~~l~I~~v~~~g~~~~~~~~~~------------------- 58 (780)
T 1z5h_A 1 MEVEKYDLTLDFDIQKRTFNGTETI--T-ADAGDIVLDAVGLQINWMKVNGRDTAFTYDGQ------------------- 58 (780)
T ss_dssp CCEEEEEEEEEEETTTTEEEEEEEE--E-ECSSCEEEECSSCEEEEEEETTEECCCEECSS-------------------
T ss_pred CEEEEEEEEEEEECCCCEEEEEEEE--E-cCCCEEEEEccCCEEEEEEEeceeccEEEECC-------------------
Confidence 4689999999999999999999999 4 66789999999999999999998877765421
Q ss_pred hhhhHHHHHHHHhhhcCCcCcEEEEcCCCCCCccccccceeeeEEEeeecccccc-ceeEEEEEEEecccccceeecceE
Q 001203 99 SAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN-VKLVRIDYWVEKVEVGIHFDGNAL 177 (1124)
Q Consensus 99 ~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~v~i~y~~~~p~~Gi~F~~~~~ 177 (1124)
.|.|.++ + | .+++ .+.|+|.+... .|+++..|. ++++
T Consensus 59 --------------------~l~i~~~-~------g--~~~l--~i~y~g~~~~~~~G~y~~~y~-----------~~~~ 96 (780)
T 1z5h_A 59 --------------------TVRAPGD-S------Q--PQKI--EISFAGKVSDSLSGIYYAGRE-----------NGMI 96 (780)
T ss_dssp --------------------EEEECCC-S------S--SEEE--EEEEEEECBSSSSEEEEESST-----------TCEE
T ss_pred --------------------EEEEEeC-C------c--cEEE--EEEEEEEeCCCcccceecccc-----------ceEE
Confidence 3666432 1 2 2344 46788876543 355554331 3678
Q ss_pred EeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCccceeeeecCCCCCeEEEEEccCCcchHhHHhhccCceE
Q 001203 178 HTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEV 257 (1124)
Q Consensus 178 ~T~~ep~~AR~wFPC~D~P~~Katf~L~ItvP~~~~avSnG~L~~~~~~~~~~~~kt~~F~~t~P~s~yliafaVG~F~~ 257 (1124)
+||+||.+||+||||+|+|+.||+|+++|++|++|+++|||++.++ .++++++++|..++|||+|++||+||+|+.
T Consensus 97 ~Tq~ep~~AR~~fPc~DeP~~Katf~iti~~p~~~~~lSN~~~~~~----~~~g~~~~~f~~t~~mstYL~a~~vg~f~~ 172 (780)
T 1z5h_A 97 TTHFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRI----EVSERKVVEFQDTPRMSTYLLYVGIGKFRY 172 (780)
T ss_dssp EEECTTTCGGGTSCBCCCTTSCBEEEEEEEECTTCEEEESSCEEEE----EESSSEEEEECCCCSBCGGGCCEEEECCEE
T ss_pred EEccccCChhheeecCCCcccccEEEEEEEECCCCEEEeCCccccc----cCCCceEEEEecCCcccceEEEEEEeccEE
Confidence 9999999999999999999999999999999999999999998764 235789999999999999999999999999
Q ss_pred eecCC-CCceEEEecCChhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCcccccccccceeeee-ccccccC
Q 001203 258 LPDHH-QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYD 335 (1124)
Q Consensus 258 ~~~~~-~~~v~~y~~P~~~~~~~~tl~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gagLii~-s~~lL~~ 335 (1124)
++... +.++++|++|+ +.++++++.+.++++||+++||++|||+||++|++|++..++|+++ |+++| ++.+|++
T Consensus 173 ~~~~~~gv~~~v~~~~~--~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vpdf~~GaMEn~--glit~~e~~ll~~ 248 (780)
T 1z5h_A 173 EYEKYRDIDLILASLKD--IRSKYPLDMARKSVEFYENYFGIPYALPKMHLISVPEFGAGAMENW--GAITFREIYMDIA 248 (780)
T ss_dssp EEEEETTEEEEEEESSC--CCCSHHHHHHHHHHHHHHHHHSSCCSSSEEEEEEETTCTTCEECCT--TEEEEEHHHHSCC
T ss_pred EeeccCCeeEEEEEccc--hhHHHHHHHHHHHHHHHHHHhCCCCCCccCCEEEcCCCCCCccccc--CeeEeecceEeec
Confidence 87643 57899999998 6778999999999999999999999999999999997656778887 67888 4568887
Q ss_pred ccccchh-hhhHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHhCChHH--HHHHHHHhhhhhhcccCC
Q 001203 336 EKVIDQA-IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEA--RYRRYKANCAVCKADDSG 412 (1124)
Q Consensus 336 ~~~id~~-~~~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~--ry~~~~~~~~~~~~d~~~ 412 (1124)
+...... .....++|||+|||||||+|||+||+|+|||||||+|++++++++.+|+..+ .|.. .........|. .
T Consensus 249 ~~~~~~~~~~~~~viaHElaHqWfGnlVT~~~W~dlWLnEGfA~y~~~~~~~~~~~~~~~~~~f~~-~~~~~al~~D~-~ 326 (780)
T 1z5h_A 249 ENSAVTVKRNSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFV-SRTSGALRSDS-L 326 (780)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHH-HTHHHHHHHTT-S
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCcccccccHHHHHHHHHHHHHHhCCchhHHHHHHH-HHHHHHHHHhh-c
Confidence 3222221 2234689999999999999999999999999999999999999999998653 1111 11111111121 1
Q ss_pred CccccCCCCcccCC-CCcccccccchhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhc
Q 001203 413 ATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVG 491 (1124)
Q Consensus 413 ~~~L~s~~s~~~l~-~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~~lst~~F~~l~e~vs 491 (1124)
. .+.|...++. +.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ ++++||++.+++++
T Consensus 327 ~---~~~pi~~~v~~~~~~~~~fd~i~Y~KGa~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~----~t~~Dl~~~l~~~s 399 (780)
T 1z5h_A 327 K---NTHPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGN----AEGSDLWTAIEDVS 399 (780)
T ss_dssp T---TCCCSCCCCCSSCCTTTTSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTEE----ECHHHHHHHHHHHH
T ss_pred c---CCCCceecCCCHHHHHHhcchhhhhhHHHHHHHHHHHhCHHHHHHHHHHHHHHhccCC----CCHHHHHHHHHHHh
Confidence 0 1111111222 23445679999999999999999999999999999999999999985 79999999999988
Q ss_pred CCCCcCHHHHHHHHHcCCCcceEEEEEEEeccccEEEEEEEeeccCCCCCCCCccCCCCCCCCCCCCCCcceeEEEEEEc
Q 001203 492 NLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHE 571 (1124)
Q Consensus 492 ~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpmtIri~E 571 (1124)
|.|+++||++|++++|+|+++|+. + ++.+.++|+|+.... +....|..|+++ .
T Consensus 400 ---g~dl~~~~~~W~~~~G~P~l~v~~--~--~~~~~l~Q~~f~~~~-----------------~~~~~w~iPi~~-~-- 452 (780)
T 1z5h_A 400 ---GKPVKRVMEYWIKNPGYPVIKLKR--N--GRKITMYQTRFLLNG-----------------EEEGRWPVPVNI-K-- 452 (780)
T ss_dssp ---CSCHHHHHHHHHHSCSCEEEEEEE--S--SSEEEEEEEECCSSC-----------------CEECCCCEEEEE-E--
T ss_pred ---CCCHHHHHHHHHhCCCCceEEEEe--c--CcEEEEEEEEecCCC-----------------CCCceEEEEEEE-c--
Confidence 468999999999999999999987 2 345677776643210 112369999998 2
Q ss_pred cCCccccccccCCCCceEEEeeeccchhhHhhhcCCCCCCCCCCCCCCCCccccccccccCCCCceEEEEcCCCcEEEEE
Q 001203 572 LDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEI 651 (1124)
Q Consensus 572 ~DGt~eh~v~~i~~~~~~~~ei~~~sKy~~~R~~k~kk~~~~~~~~~~~d~~~~~d~~~~~~~p~~WIRiDpd~ewl~~v 651 (1124)
.+|. .+ .. +. . + + + .. ... .||.++++..-..+|
T Consensus 453 ~~~~-~~-----------~~-l~--~--------~-------~--------~-~~------~~~-~~i~~N~~~~gyyrv 486 (780)
T 1z5h_A 453 KKDG-VE-----------RI-LL--E--------D-------E--------A-SI------EAD-GLIKINADSAGFYRV 486 (780)
T ss_dssp ETTE-EE-----------EE-EE--C--------S-------S--------E-EE------ECT-TEEEESGGGCSSSEE
T ss_pred CCCc-ee-----------ee-cc--C--------c-------e--------E-Ec------cCC-ceEEEeCCCCEEEEE
Confidence 2332 11 01 10 0 0 0 1 00 012 799999999999999
Q ss_pred ccCCCHHHHHHHHhh--CCCcHHH---HHHHHHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHccc
Q 001203 652 HFNQPVQMWINQLEK--DGDVVAQ---AQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (1124)
Q Consensus 652 ~~~qp~~m~~~QL~~--drDV~aQ---~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~ 719 (1124)
+.+ +..|..-.++ .=++..| +..+-+|.+....+....-.|.+.|.+|. .|.|...|...|..+.
T Consensus 487 ~Yd--~~~~~~l~~~l~~i~~~~Ra~li~D~~~l~~~g~~~~~~~l~l~~~l~~E~-~~~~w~~~~~~l~~~~ 556 (780)
T 1z5h_A 487 LYD--DATFSDVMGHYRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDE-DHNVITAIVGQMEYLR 556 (780)
T ss_dssp ECC--HHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHGGGTTCC-CHHHHHHHHHHHHHHH
T ss_pred ECC--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHH
Confidence 886 5566554332 2477777 34455565433334333334556777764 7788888877776554
No 8
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=100.00 E-value=2e-67 Score=648.00 Aligned_cols=452 Identities=17% Similarity=0.259 Sum_probs=351.3
Q ss_pred CCeEEEEEEEEEEEECCCcEEEEEEEEEEEeC--CccEEEEEcCCceeEEEEEcCeeeeeeecCCCcccchhhhhhcccc
Q 001203 17 SGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP--DIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMV 94 (1124)
Q Consensus 17 ~~~~~~Hy~l~L~id~~~~~~~G~v~Iti~~~--~l~~I~L~a~~L~I~~V~Vng~~~~f~~~~~~~~~~~~~~~~~~lv 94 (1124)
..+++.||+|+|++|+++++|+|.|+|++.+. .++.|.||+++|+|++|+|||+++.|...... .
T Consensus 12 ~~~rv~Hy~L~l~vD~~~~~~~G~v~I~~~~~~~~~~~i~Ld~~~L~I~~V~v~g~~~~~~~~~~~-~------------ 78 (608)
T 3u9w_A 12 SVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGERQ-S------------ 78 (608)
T ss_dssp TTEEEEEEEEEEEEETTTTEEEEEEEEEEEECSTTEEEEEEEESSCEEEEEEETTEECCEEECCCC-G------------
T ss_pred cCCCceEEEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEECCCCEEEEEEECCEEcceeccccc-c------------
Confidence 34689999999999999999999999999863 36899999999999999999999888764320 0
Q ss_pred cCCChhhhHHHHHHHHhhhcCCcCcEEEEcCCCCCCccccccceeeeEEEeeeccccccceeEEEEEEEecccccceeec
Q 001203 95 SSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDG 174 (1124)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v~i~y~~~~p~~Gi~F~~ 174 (1124)
.....|.|.++. .++.+. +..+.+.|.|.+... ++....+ ...+|- ..
T Consensus 79 --------------------~~~~~l~I~l~~---~l~~g~---~~~l~I~y~~~~~~~-~~~~~~~---~~~~g~--~~ 126 (608)
T 3u9w_A 79 --------------------YKGSPMEISLPI---ALSKNQ---EIVIEISFETSPKSS-ALQWLTP---EQTSGK--EH 126 (608)
T ss_dssp --------------------GGCEEEEEEEEE---EECTTC---EEEEEEEEECCTTCT-TEEEECG---GGSSSS--SS
T ss_pred --------------------ccCceEEEEcCC---CCCCCC---EEEEEEEEEEEcCCC-ceeeecc---cccCCC--cc
Confidence 001236776532 222222 234456777776543 2211111 112221 24
Q ss_pred ceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCccceeeeecCCCCCeEEEEEccCCcchHhHHhhccC
Q 001203 175 NALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254 (1124)
Q Consensus 175 ~~~~T~~ep~~AR~wFPC~D~P~~Katf~L~ItvP~~~~avSnG~L~~~~~~~~~~~~kt~~F~~t~P~s~yliafaVG~ 254 (1124)
++++||+||.+||+||||+|+|+.||||+++|++|++++|+|||.+.++...+.++++++++|..++|||+|++||+||+
T Consensus 127 ~~~~Tq~ep~~AR~~fPc~D~P~~Katf~i~I~~p~~~~alsng~~~~~~~~~~~~~~~~~~f~~t~pmstYL~a~~vg~ 206 (608)
T 3u9w_A 127 PYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGA 206 (608)
T ss_dssp CEEEECCTTTTGGGTSCBCCSTTCCEEEEEEEEEETTSEEEESSEEEEEEECTTCTTEEEEEEEEEEEECGGGCCEEEES
T ss_pred eEEEEcccCCCCCEEEEecCccceeEEEEEEeeCCcceeeeeeccccceeeccCCCCeEEEEEEecCCcccEEEEEEEee
Confidence 68999999999999999999999999999999999999999999998877666677899999999999999999999999
Q ss_pred ceEeecCCCCceEEEecCChhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCC-cccccccccceeeeeccccc
Q 001203 255 FEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPE-MAVSSSTFGAAMGIFSSQIL 333 (1124)
Q Consensus 255 F~~~~~~~~~~v~~y~~P~~~~~~~~tl~~~~~al~ffee~fG~~YPf~ky~~VfVp~~-~~~~~~~~gagLii~s~~lL 333 (1124)
|+..+. +..+.+|+.|+..+.+.+++..+.++++|||+++| +|||++|+++++|++ ..++|+++ ||+++++.+|
T Consensus 207 f~~~~~--~~~~~v~~~p~~~~~~~~~~~~~~~~l~~~e~~~g-~Yp~~~~~~vv~~p~f~~GgMEn~--gl~~~~~~~l 281 (608)
T 3u9w_A 207 LESRQI--GPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG-PYVWGQYDLLVLPPSFPYGGMENP--CLTFVTPTLL 281 (608)
T ss_dssp CEEEEE--ETTEEEEECHHHHHHHHHHTTTHHHHHHHHHHHHC-CCCSSCCEEEECCTTCSSSEECCT--TEEEECGGGC
T ss_pred eeeEec--CCceEEEeChhhHHHHHHHHHHHHHHHHhHHhcCC-CCCchhhceeeecccccchhhhcC--cceeeeeeee
Confidence 998765 56788999999999999999999999999999998 999999999998543 34567776 6788877766
Q ss_pred cCccccchhhhhHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHhhhhhhc-c-cC
Q 001203 334 YDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKA-D-DS 411 (1124)
Q Consensus 334 ~~~~~id~~~~~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~ry~~~~~~~~~~~~-d-~~ 411 (1124)
..+.. ...+||||+|||||||+||++||+|+|||||||+|++++++++.+|.+...+............ + ..
T Consensus 282 ~~~~~------~~~viaHElAHqWfGnlVT~~~W~d~WLnEGfAty~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (608)
T 3u9w_A 282 AGDKS------LSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFG 355 (608)
T ss_dssp CSSST------TTHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccch------hHHHHHHHhhhhhhcCcCccccccchhHHHhHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhhhh
Confidence 55432 2347999999999999999999999999999999999999999999876543322211111100 1 01
Q ss_pred CCccccCCCCcccCCCCcccccccchhhhhHHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHh
Q 001203 412 GATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKV 490 (1124)
Q Consensus 412 ~~~~L~s~~s~~~l~~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG-~e~F~~~L~~yl~~~~~~~~~~~lst~~F~~l~e~v 490 (1124)
...++... ..+....+....|+.++|.||++|||||++.|| ++.|+++|+.|++++++++ ++++||+++++++
T Consensus 356 ~~~p~~~~--~~~~~~~~~~~~f~~i~Y~KGa~vL~mL~~~lG~~~~F~~~lr~Yl~~~~~~~----~tt~Df~~~l~~~ 429 (608)
T 3u9w_A 356 ETHPFTKL--VVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS----ITTDDWKDFLYSY 429 (608)
T ss_dssp TTCGGGSS--SCCCTTCCHHHHCSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTEE----ECHHHHHHHHHHH
T ss_pred ccCCcccc--ccccccCChhhcccHHHHhHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHH
Confidence 11111111 111122223457899999999999999999998 6789999999999999985 7999999999988
Q ss_pred cCCCCcCHHHH----HHHHHcCCCcceEEEEEEEeccccEEEEEEEe
Q 001203 491 GNLERPFLKEF----FPRWVGTCGCPVLRMGFSYNKRKNIVELAVLR 533 (1124)
Q Consensus 491 s~~~g~dL~~F----f~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q 533 (1124)
+ +.+++.+ |++|++++|+|.++|+++++..+.++++++++
T Consensus 430 ~---~~~~~~~~~~~~~~W~~~~G~P~v~v~~d~~~~~~~~~l~q~~ 473 (608)
T 3u9w_A 430 F---KDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRW 473 (608)
T ss_dssp T---GGGHHHHHTSCHHHHHHCCSSCSSCCCCCCTTTHHHHHHHHHH
T ss_pred h---ccccchhhHHHHHHHhcCCCCCceeeeeccccccceeeHHhHH
Confidence 7 4578888 99999999999999998877666666665543
No 9
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=100.00 E-value=1.9e-61 Score=594.42 Aligned_cols=430 Identities=18% Similarity=0.269 Sum_probs=330.7
Q ss_pred CCCCCeEEEEEEEEEEEECCCcEEEEEEEEEEEeC-C-ccEEEEEcCCceeEEEEE-c--C--eeeeeeecCCCcccchh
Q 001203 14 VENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-D-IGIVGLHAENLGIESVLV-D--G--EPTEFEYYPHNHQNVEN 86 (1124)
Q Consensus 14 ~~~~~~~~~Hy~l~L~id~~~~~~~G~v~Iti~~~-~-l~~I~L~a~~L~I~~V~V-n--g--~~~~f~~~~~~~~~~~~ 86 (1124)
.....+.|.||+|+|++|+++.+|.|.|+|++.+. + ++.|.||+++|+|.+|+| | | +++.|++.+. +.
T Consensus 21 ~~p~~~~~~hy~l~l~~d~~~~~~~G~v~I~~~~~~~~~~~i~Ld~~~l~I~~v~v~~~~g~~~~~~~~~~~~-~~---- 95 (605)
T 3cia_A 21 ANYDQVKATHVYLDLNVDFDKKSLSGFAELSLDWFTDNKAPLILDTRDLVIHRVMAKNSQGQWVKVNYDLAKR-DD---- 95 (605)
T ss_dssp CCTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEECCSSCCCEEEBCSSEEEEEEEEECTTCCEEEECEEEEEE-CS----
T ss_pred cCCCCceEEEEEEEEEEeCCCCEEEEEEEEEEEECCCCCCEEEEECCCCEEEEEEEEcCCCCccceeEEecCc-cc----
Confidence 44468999999999999999999999999999874 3 689999999999999999 8 8 7777766431 00
Q ss_pred hhhhcccccCCChhhhHHHHHHHHhhhcCCcCcEEEEcCCCCCCccccccceeeeEEEeeeccccccceeEEEEEEEec-
Q 001203 87 EKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEK- 165 (1124)
Q Consensus 87 ~~~~~~lv~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v~i~y~~~~- 165 (1124)
.....|.|.++ . +.+++ .+.|+|.+... ++ +|+..
T Consensus 96 ----------------------------~~~~~l~i~l~-------~--~~~~l--~i~y~~~~~~~-gl----~~~~~~ 131 (605)
T 3cia_A 96 ----------------------------VLGSKLTINTP-------L--NAKKV--RVYYNSTEKAT-GL----QWLSAE 131 (605)
T ss_dssp ----------------------------SSCEEEEECCC-------T--TCSEE--EEEEEECTTCT-TE----EEECGG
T ss_pred ----------------------------cCCCeEEEEeC-------C--ceEEE--EEEEEEecCCC-ce----EEeccc
Confidence 00124667432 1 22333 46788876542 22 23321
Q ss_pred ccccceeecceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCccceeeeecCCCCCeEEEEEccCCcch
Q 001203 166 VEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245 (1124)
Q Consensus 166 p~~Gi~F~~~~~~T~~ep~~AR~wFPC~D~P~~Katf~L~ItvP~~~~avSnG~L~~~~~~~~~~~~kt~~F~~t~P~s~ 245 (1124)
..+|- ..++++|||||.+||+||||+|+|+.||+|+++|++|++|+|+|||....+. .++ .+++|+.++|||+
T Consensus 132 ~~~g~--~~~~~~Tq~ep~~AR~~fPc~D~P~~katf~i~i~~p~~~~alsng~~~~~~---~~~--~~~~f~~t~pmst 204 (605)
T 3cia_A 132 QTAGK--EKPFLFSQNQAIHARSWIPIQDTPSVRVTYTARITTDKDLLAVMSANNEPGT---ERD--GDYFFSMPQAIPP 204 (605)
T ss_dssp GSSSS--SSCEEEECCTTTTGGGTSCBCCCTTCCEEEEEEEECCTTCEEEESSEEC-------CC--SEEEEEEEEEECG
T ss_pred ccCCC--cccEEEecCcccChhhceecCCCcCceeEEEEEEEEcCCcEEEecCCcccee---cCC--CeEEEeeCCCccc
Confidence 11231 2478899999999999999999999999999999999999999999654321 122 3799999999999
Q ss_pred HhHHhhccCceEeecCCCCceEEEecCChhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeC-CCcccccccccce
Q 001203 246 KWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSSTFGAA 324 (1124)
Q Consensus 246 yliafaVG~F~~~~~~~~~~v~~y~~P~~~~~~~~tl~~~~~al~ffee~fG~~YPf~ky~~VfVp-~~~~~~~~~~gag 324 (1124)
|++||+||+|+..+. +.++++|++|+..+.+++++..+.+++++|+++|| +|||++|++|++| +...++|+++ |
T Consensus 205 Yl~a~~vg~f~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~l~~~e~~fG-~YP~~k~d~v~~p~~f~~GgMEn~--g 279 (605)
T 3cia_A 205 YLIAIGVGDLEFKAM--SHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMYG-KYRWGRYDLLMLPPSFPFGGMENP--R 279 (605)
T ss_dssp GGCCEEEESCEEEES--SSSEEEEECSTTHHHHHHHSTTHHHHHHHHHHHHC-CCTTSCEEEEECCTTCSSSEECCT--T
T ss_pred eeEEEEEeeeeEecC--CCeEEEEeccChHHHHHHHHHHHHHHHHHHHHHhC-CCCCccccEEEECCccCCCcccCC--c
Confidence 999999999999875 45799999999999999999999999999999999 9999999999996 4335568887 4
Q ss_pred eeeeccccccCccccchhhhhHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH---
Q 001203 325 MGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKA--- 401 (1124)
Q Consensus 325 Lii~s~~lL~~~~~id~~~~~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~ry~~~~~--- 401 (1124)
+++.+..+|.++.. ...+||||+|||||||+||++||+|+|||||||+|++++++++.+|++..++.....
T Consensus 280 ltf~~~~ll~~~~~------~~~viaHElaHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~~~g~~~~~~~~~~~~~~ 353 (605)
T 3cia_A 280 LSFITPTVVAGDKS------LVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQALGAQD 353 (605)
T ss_dssp EEEECGGGCCSSSC------STHHHHHHHHHTTBTTTEEESSTTSTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred EEEecchhccCcHH------HHHHHHHHHHHHhhccccccCcchHhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 65556677765431 235899999999999999999999999999999999999999999987654432211
Q ss_pred hhhhhhcccCCCccccCCCCcccCCCCcccccccchhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCCCCCCCCHH
Q 001203 402 NCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTK 481 (1124)
Q Consensus 402 ~~~~~~~d~~~~~~L~s~~s~~~l~~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~~lst~ 481 (1124)
....+........++ ..++.+.++...|+.++|.||++||+||+..+|++.|+++|+.|++++++++ ++++
T Consensus 354 l~~~l~~~~~~~~pl-----~~~~~~~~~~~~f~~i~Y~KGa~vl~mL~~~lG~e~F~~~lr~yl~~~~~~~----~t~~ 424 (605)
T 3cia_A 354 LNAEILELDASDTQL-----YIDLKGRDPDDAFSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDSHAFQS----LGTD 424 (605)
T ss_dssp HHHHHHHSCTTTTSS-----SCCCTTCCTTTSCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTTEE----ECHH
T ss_pred HHHHHHhhccCCCCc-----ccCCCCCChhHhhCccchhHHHHHHHHHHHHhChHHHHHHHHHHHHHhCcCC----CCHH
Confidence 111110000111111 1122223445678999999999999999999999999999999999999885 7999
Q ss_pred HHHHHHHHhcCCC-CcCHHH-HHHHHHcCCCcceEEEEEE
Q 001203 482 EFRHFANKVGNLE-RPFLKE-FFPRWVGTCGCPVLRMGFS 519 (1124)
Q Consensus 482 ~F~~l~e~vs~~~-g~dL~~-Ff~qWv~~~G~P~l~V~~~ 519 (1124)
+|++.++++++.. ..+++. +|++|++++|+|.+++++.
T Consensus 425 df~~~l~~~~~~~~~~~l~~~~~~~W~~~~G~P~~~~~~~ 464 (605)
T 3cia_A 425 NFVKYLKANLTDKYPNIVSDNEINEWIFKAGLPSYAPQPT 464 (605)
T ss_dssp HHHHHHHHTTTTTSTTSSCHHHHHHHHHSSSCCSSSCCCC
T ss_pred HHHHHHHHHhccccccccchhhHHHHhcCCCCCceeccCC
Confidence 9999999987520 124554 7999999999999987653
No 10
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=100.00 E-value=1.4e-61 Score=597.58 Aligned_cols=430 Identities=18% Similarity=0.255 Sum_probs=330.8
Q ss_pred CCCCeEEEEEEEEEEEECCCcEEEEEEEEEEEeC-C----ccEEEEEcCCceeEEEEEcCeeeeeeecCCCcccchhhhh
Q 001203 15 ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-D----IGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKR 89 (1124)
Q Consensus 15 ~~~~~~~~Hy~l~L~id~~~~~~~G~v~Iti~~~-~----l~~I~L~a~~L~I~~V~Vng~~~~f~~~~~~~~~~~~~~~ 89 (1124)
....+.|.||+|+|++|+++.+|.|.++|++.+. + ++.|.||+++|+|++|++||.++.|++.+. ..
T Consensus 24 ~p~~~~~~hY~L~l~~d~~~~~~~G~v~I~~~~~~~~~~~~~~i~Ld~~~l~I~~v~v~g~~~~~~~~~~-~~------- 95 (632)
T 2xq0_A 24 NYKDFAVLHTDLNLSVSFEKSAISGSVTFQLKKLHEGKNKSDELHLDTSYLDVQEVHIDGSKADFQIEQR-KE------- 95 (632)
T ss_dssp CGGGEEEEEEEEEEEEETTTTEEEEEEEEEEEECC---CCCCEEEEBCSSEEEEEEEETTEECCEEECCC-BT-------
T ss_pred CCCceeEEEEEEEEEEeCCCCEEEEEEEEEEEECCCCCCcCcEEEEEccCCEEEEEEECCeecceEEccc-cc-------
Confidence 3358999999999999999999999999999863 4 789999999999999999999888776532 00
Q ss_pred hcccccCCChhhhHHHHHHHHhhhcCCcCcEEEEcCCCCCCccccccceeeeEEEeeeccccccceeEEEEEEEec-ccc
Q 001203 90 WRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEK-VEV 168 (1124)
Q Consensus 90 ~~~lv~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v~i~y~~~~-p~~ 168 (1124)
.....|.|.++.+ + +.+ .+.+.|+|.+... ++ +++.. ..+
T Consensus 96 -------------------------~~~~~l~I~l~~~------g-~~~--~l~I~Y~g~~~~~-gl----~~~~~~~~~ 136 (632)
T 2xq0_A 96 -------------------------PLGSRLVINNASC------N-DNF--TLNIQFRTTDKCT-AL----QWLNSKQTK 136 (632)
T ss_dssp -------------------------TTBCCEEEECCCS------S-SEE--EEEEEEEECTTCS-SE----EEECTTTST
T ss_pred -------------------------ccCcEEEEEecCC------C-CEE--EEEEEEeeecCcC-cc----eeecccccC
Confidence 0112478865422 1 223 3456788876542 22 23321 112
Q ss_pred cceeecceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCccceeeeecCCCCCeEEEEEccCCcchHhH
Q 001203 169 GIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWI 248 (1124)
Q Consensus 169 Gi~F~~~~~~T~~ep~~AR~wFPC~D~P~~Katf~L~ItvP~~~~avSnG~L~~~~~~~~~~~~kt~~F~~t~P~s~yli 248 (1124)
|- .++++||+||.+||+||||+|+|+.||||+++|++| ++|++||.++++.. . +.++++|+.++|||+|++
T Consensus 137 g~---~~~~~Tq~ep~~AR~~fPc~D~P~~Katf~i~I~~p--~~vv~sg~~~~~~~--~--~~~~~~F~~t~pmstYLv 207 (632)
T 2xq0_A 137 GG---KPYVFSQLEAIHARSLFPCFDTPSVKSTFTASIESP--LPVVFSGIRIEDTS--K--DTNIYRFEQKVPIPAYLI 207 (632)
T ss_dssp TS---SCEEEECCTTTTGGGTSCBCCSTTCCEEEEEEEECS--SCEEESSEECCCC--------CEEEEEEEEEECGGGC
T ss_pred CC---ceEEEeccccCCcceeeeecCCcccceEEEEEEEEc--hHHhccCcccccee--c--CCCeEEEEeCCccchhhe
Confidence 31 367899999999999999999999999999999999 99999997765432 1 234899999999999999
Q ss_pred HhhccCceEeecCCCCceEEEecCChhhhHHHHHH-HHHHHHHHHHHhcCCCCCCCCccEEEeC-CCcccccccccceee
Q 001203 249 TLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSSTFGAAMG 326 (1124)
Q Consensus 249 afaVG~F~~~~~~~~~~v~~y~~P~~~~~~~~tl~-~~~~al~ffee~fG~~YPf~ky~~VfVp-~~~~~~~~~~gagLi 326 (1124)
||+||+|+..+. +..+++|++|+..+.+.+++. .+.++++||+++|| +|||++|++|++| +...++|+++ |++
T Consensus 208 a~~vg~f~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~fG-pYP~~k~d~v~~pp~f~~GgMEn~--glt 282 (632)
T 2xq0_A 208 GIASGDLSSAPI--GPRSTVYTEPFRLKDCQWEFENDVEKFIQTAEKIIF-EYEWGTYDILVNVDSYPYGGMESP--NMT 282 (632)
T ss_dssp CEEESSCEEEEE--ETTEEEEECHHHHHHHHHHHTTTHHHHHHHHHHHSC-CCCSSCCCEEECCTTCCSSEECCT--TCE
T ss_pred eeeEecceeecc--CCeeEEEEccchHHHHHHHHHHHHHHHHHHHHHhcc-cCCcccccEEEECCCCCCCccccc--eEE
Confidence 999999999875 457999999999888899998 99999999999999 9999999999996 4445678888 466
Q ss_pred eeccccccCccccchhhhhHHHHHHHHHHhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHhhhhh
Q 001203 327 IFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVC 406 (1124)
Q Consensus 327 i~s~~lL~~~~~id~~~~~~~~laHELAHQWFG~lVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~ry~~~~~~~~~~ 406 (1124)
+.++.+|.++.. ...+||||+|||||||+||++||+|+|||||||+|++++++++.+|++.+++.....+....
T Consensus 283 ~~~~~ll~~~~~------~~~viaHElAHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~~~g~~~~~~~~~~~~~~l~ 356 (632)
T 2xq0_A 283 FATPTLLAHDRS------NIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQ 356 (632)
T ss_dssp EECGGGCCSSSC------STHHHHHHHHHTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred EeeceeccCchh------HHHHHHHHHHHHHhcCCCccCCcchhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 567777765431 24589999999999999999999999999999999999999999998765444321111110
Q ss_pred --hcccCCCccccCCCCcccCC-CCcccccccchhhhhHHHHHHHHHHHhCh-HHHHHHHHHHHHHhcCCCCCCCCCHHH
Q 001203 407 --KADDSGATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGS-NFFRKILQNIISRAQGASPVRTLSTKE 482 (1124)
Q Consensus 407 --~~d~~~~~~L~s~~s~~~l~-~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~-e~F~~~L~~yl~~~~~~~~~~~lst~~ 482 (1124)
........++.. ...++. ..++...|+.++|.||++|||||+..||+ +.|+++|+.|++++++++ +++++
T Consensus 357 ~~l~~~~~~~pl~~--l~~~~~~~~~~~~~f~~i~Y~KGa~vL~mL~~~lG~~e~F~~~Lr~Yl~~~~~~~----~tt~D 430 (632)
T 2xq0_A 357 NSIDSMKDPERFST--LVQNLNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIRHYFKKFAKKS----LDTFQ 430 (632)
T ss_dssp HHHHTCSSHHHHTS--SSCCCCSSSCGGGGCSSHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTEE----ECHHH
T ss_pred HHHHhcccCCCCcc--cccCCCCCCChHHhccchhhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhCcCC----CCHHH
Confidence 000011111110 011221 23445678999999999999999999999 999999999999999885 79999
Q ss_pred HHHHHHHhcCCCCcCHHH-HHHHHHcCCCcceEEEEE
Q 001203 483 FRHFANKVGNLERPFLKE-FFPRWVGTCGCPVLRMGF 518 (1124)
Q Consensus 483 F~~l~e~vs~~~g~dL~~-Ff~qWv~~~G~P~l~V~~ 518 (1124)
|++.++++++..+.+++. +|++|++++|+|. .+++
T Consensus 431 f~~~l~~~~~~~~~~l~~~~~~~W~~~~G~P~-~~~~ 466 (632)
T 2xq0_A 431 FLDTLYEFYPEKKEILDSVDWETWLYKPGMPP-RPHF 466 (632)
T ss_dssp HHHHHHHHCGGGHHHHHTSCHHHHHHCCSCCC-CCCC
T ss_pred HHHHHHHHhhhccccccHHHHHHHhcCCCCCC-CcCC
Confidence 999999887421246777 7999999999999 6543
No 11
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=99.88 E-value=6.7e-22 Score=241.22 Aligned_cols=312 Identities=10% Similarity=0.060 Sum_probs=188.8
Q ss_pred EEEeeCCCCCCceEEEEEEEEcCC---cEEEecCccceeeeecCCCCCeEEEEEccCCcchHhH--HhhccCceEeecCC
Q 001203 188 CWFPCIDDTTQRCCYDLEFTVSQN---LIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWI--TLAVAPFEVLPDHH 262 (1124)
Q Consensus 188 ~wFPC~D~P~~Katf~L~ItvP~~---~~avSnG~L~~~~~~~~~~~~kt~~F~~t~P~s~yli--afaVG~F~~~~~~~ 262 (1124)
+.|..++.- ...+++++|+.|++ |.+.+..+..+. ...+.. +|....- -.+| -+.+|+|+..+...
T Consensus 110 ~~fly~~g~-~~~p~~~~i~~P~~~~~W~vaT~L~~~~~----~~~~~~--~f~a~~y--d~LvDsPv~~G~~~~~~~~~ 180 (597)
T 4fgm_A 110 SLCLAVEGQ-TDLPCELHLHAPPEAPLWKVATGMPRKSG----QPHSWG--CFRADNY--DALIDYPFLIGDLTIEEFIA 180 (597)
T ss_dssp HHCCEETTC-TTSCEEEEECCCTTCTTCEEEESSCBCSS----CTTSSE--EEEESSH--HHHTTCCEEEESCEEEEEEE
T ss_pred hhheeccCc-cCCcEEEEEECCCCCCcceEEecCCccCC----CCCcce--EEEcCCH--HHHhcchhcccCcEEEEecc
Confidence 455555543 56788999999999 997776654321 111222 3433210 0000 13688888766543
Q ss_pred -CCceEEEecCChhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeC-CCcccccccccceeeeecccccc-Cc--c
Q 001203 263 -QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSSTFGAAMGIFSSQILY-DE--K 337 (1124)
Q Consensus 263 -~~~v~~y~~P~~~~~~~~tl~~~~~al~ffee~fG~~YPf~ky~~VfVp-~~~~~~~~~~gagLii~s~~lL~-~~--~ 337 (1124)
+.++.+...+......+..+..+.+++++++++|| +|||++|.+++.+ +...++|++.++.+++++...+. .. .
T Consensus 181 ~g~p~~l~v~~~~~~d~~~~~~~~~~~~~~~~~~fG-~yP~~~Y~fl~~~~~~~~GgmEh~~st~l~~~~~~l~~~~~~~ 259 (597)
T 4fgm_A 181 HGIKHSLVLSGRHYADTSRITADLAKICETQISLFE-EAPFQSYTFLTMVVGNGFGGLEHRNSTALLCSRKDLISAHQYE 259 (597)
T ss_dssp TTEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHT-SCSCSEEEEEEEEESSCCEEEECSSEEEEEEEGGGSCCTTCCS
T ss_pred CCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhC-CCCCCceEEEEEccCCCCcccccCCceEEEeCchhcccccccc
Confidence 44555433332223457888899999999999999 9999999998643 12223444443334444333221 10 0
Q ss_pred ccchhhhhHHHHHHHHHHhhcCcccccC-----------CCCchHHHHHHHHHHHHHHHHHHhCChHHHHHH--HHHhhh
Q 001203 338 VIDQAIDTSIKLSFALARQWFGVYITPE-----------LPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRR--YKANCA 404 (1124)
Q Consensus 338 ~id~~~~~~~~laHELAHQWFG~lVt~~-----------~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~ry~~--~~~~~~ 404 (1124)
..+.......+++||++|||||+.|+|+ +|+++||+||||+|++.+++.+.-......|.. ......
T Consensus 260 ~~~~~~~~~~liaHE~~H~W~g~~i~p~~~~~~d~~~~~~~~~lWl~EG~t~Y~~~l~~~r~G~~~~~~~~~~l~~~i~~ 339 (597)
T 4fgm_A 260 MNDNYQTFLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEGMTSYFDDYLLHTSGIIDEKRYLKLLGDTLSR 339 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHTTBTTTBCBGGGSSCCCSSCCCCSTHHHHTHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred chhhhhchhhhHhhhhheeecccccccccccccccccccccccchhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 1111122345899999999999888765 468999999999999999987653232222221 122212
Q ss_pred hhhcccCCCcccc-CCC-CcccCCC-CcccccccchhhhhHHHHHHHHHHHhCh-----HHHHHHHHHHHHHhcCCCCCC
Q 001203 405 VCKADDSGATALS-SSA-SCKDLYG-TQCIGIFGKIRSCKSVAILQMLEKQMGS-----NFFRKILQNIISRAQGASPVR 476 (1124)
Q Consensus 405 ~~~~d~~~~~~L~-s~~-s~~~l~~-~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~-----e~F~~~L~~yl~~~~~~~~~~ 476 (1124)
+.........++. ++. .....+. .+.........|.||++|++||+..|++ ++|+++|+.|+.++.... .
T Consensus 340 ~~~~~gr~~~sl~~ss~~aw~~~yr~~~n~~n~~~s~Y~KGalv~~~LD~~lR~~s~g~~sldd~mr~l~~~~~~~~--~ 417 (597)
T 4fgm_A 340 VERGAGQYQQSVTESSFLAWTKFYQQNENAPNSIVSYYAKGALIALSLDLMLRLQSDHKLTLARVMKELWHEFGKTS--I 417 (597)
T ss_dssp HHHSGGGGTCCHHHHHHTCCCCCTTCCTTHHHHCCCTTHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHTTTT--C
T ss_pred hhcCCCccccChHHcCchhhhccccCCcccCCcccccchHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhCcCC--C
Confidence 2110000001111 000 0001110 0000011123599999999999888855 589999999999886421 2
Q ss_pred CCCHHHHHHHHHHhcCCCCcCHHHHHHHHHcCCCcceE
Q 001203 477 TLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVL 514 (1124)
Q Consensus 477 ~lst~~F~~l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l 514 (1124)
..++++|.+++++++ |.|+.+||++|+++++.+.+
T Consensus 418 ~~t~~d~~~~~e~~s---G~dl~~ff~~~l~~t~~~p~ 452 (597)
T 4fgm_A 418 GTADDTVINWLNQYP---GIDISDFLKDALYNKESLSL 452 (597)
T ss_dssp CBCTTHHHHHHHTST---TCCCHHHHHHHHHSCSCCCC
T ss_pred CCCHHHHHHHHHHhc---CcCHHHHHHHHHhCCCCcch
Confidence 478999999999987 46899999999999998644
No 12
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=95.70 E-value=0.096 Score=54.18 Aligned_cols=171 Identities=25% Similarity=0.222 Sum_probs=109.6
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHH
Q 001203 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (1124)
Q Consensus 657 ~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~ 736 (1124)
...++..| .|+|...|..|+..|.+... ..+...|.+.|.|+ -..||..|+.+|+++..++ .+..|++.++
T Consensus 21 ~~~L~~~L-~~~~~~vR~~A~~~L~~~~~--~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~ 91 (211)
T 3ltm_A 21 VEMYIKNL-QDDSYYVRRAAAYALGKIGD--ERAVEPLIKALKDE--DAWVRRAAADALGQIGDER----AVEPLIKALK 91 (211)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCS--CHHHHHHHHHHHHHHCCGG----GHHHHHHHTT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHcCC--CHHHHHHHHHHHHhhCCHH----HHHHHHHHHc
Confidence 45566666 48999999999999998754 24668899999885 6899999999999998653 3677776654
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhhchHHHHHHHHHHHHHHcccccCCCC
Q 001203 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKSILFLSSLLKRIDRLLQFDRLMPSY 816 (1124)
Q Consensus 737 ~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~~~~~~~~~~ei~r~l~~D~~~pSy 816 (1124)
. + +..|+.+...+|+.+.+ +++...|+++|++.
T Consensus 92 ~----~--------------~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~----------------------- 124 (211)
T 3ltm_A 92 D----E--------------DGWVRQSAAVALGQIGD------ERAVEPLIKALKDE----------------------- 124 (211)
T ss_dssp C----S--------------SHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCS-----------------------
T ss_pred C----C--------------CHHHHHHHHHHHHHhCc------HHHHHHHHHHHhCC-----------------------
Confidence 2 1 23588888899998854 34566666666522
Q ss_pred CchhhHHHHHHHHHHHHHhcCCCchhhhhhhcccccCcCChHHHHHHHHHHhhccccccCChhHHHHHHHHHhcc-CCcc
Q 001203 817 NGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEE-EPSL 895 (1124)
Q Consensus 817 ~~~vt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vR~~A~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 895 (1124)
..-|-.+++.+|.+++ ..-..+.+..++ .. .-..||.+|.++|-.++. ..++..+...+.. +|.+
T Consensus 125 ~~~vr~~a~~aL~~~~----~~~~~~~L~~~l----~d-~~~~vr~~a~~aL~~~~~-----~~~~~~L~~~l~d~~~~v 190 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIG----DERAVEPLIKAL----KD-EDGWVRQSAADALGEIGG-----ERVRAAMEKLAETGTGFA 190 (211)
T ss_dssp SHHHHHHHHHHHHHHC----CGGGHHHHHHHT----TC-SSHHHHHHHHHHHHHHCS-----HHHHHHHHHHHHHCCHHH
T ss_pred CHHHHHHHHHHHHHcC----CHHHHHHHHHHH----cC-CCHHHHHHHHHHHHHhCc-----hhHHHHHHHHHhCCCHHH
Confidence 1223344555555431 100112222222 11 225799999999988742 3566666666642 4445
Q ss_pred hh
Q 001203 896 RG 897 (1124)
Q Consensus 896 ~~ 897 (1124)
|.
T Consensus 191 r~ 192 (211)
T 3ltm_A 191 RK 192 (211)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 13
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.87 E-value=0.25 Score=50.59 Aligned_cols=103 Identities=25% Similarity=0.195 Sum_probs=74.5
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHH
Q 001203 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (1124)
Q Consensus 657 ~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~ 736 (1124)
.+...-++-.|+|...|..|+.+|...... .....|.+.|.|+ -..||..|+.+|+++..++ ....|+++..
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~--~~~~~L~~~l~~~--~~~vr~~a~~~L~~~~~~~----~~~~L~~~l~ 86 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDE--RAVEPLIKALKDE--DAWVRRAAADALGQIGDER----AVEPLIKALK 86 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCG--GGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGG----GHHHHHHHTT
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCCh--hHHHHHHHHHcCC--CHHHHHHHHHHHHhhCCHH----HHHHHHHHHc
Confidence 344444555889999999999999987542 3568899999875 5789999999999987653 4677776553
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhh
Q 001203 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLK 791 (1124)
Q Consensus 737 ~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~ 791 (1124)
. + +..|+.+...+|+.+.+ +++...|+.+|+
T Consensus 87 d----~--------------~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~ 117 (201)
T 3ltj_A 87 D----E--------------DGWVRQSAAVALGQIGD------ERAVEPLIKALK 117 (201)
T ss_dssp C----S--------------SHHHHHHHHHHHHHHCC------GGGHHHHHHHTT
T ss_pred C----C--------------CHHHHHHHHHHHHHhCc------HHHHHHHHHHHc
Confidence 1 1 13588888899988854 245555555555
No 14
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=93.47 E-value=0.99 Score=48.60 Aligned_cols=101 Identities=16% Similarity=0.122 Sum_probs=67.2
Q ss_pred HHhhCCCcHHHHHHHHHHHhCC----CCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHHhc
Q 001203 663 QLEKDGDVVAQAQAIAALEALP----HLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSR 738 (1124)
Q Consensus 663 QL~~drDV~aQ~eAi~~L~~~~----~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~~~ 738 (1124)
.+..|.|...|..|+.+|.... .....++..|.+.+.|+ -+.||..|+.+|+++..++ .++.|++..+.
T Consensus 98 ~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~--~~~vR~~a~~aL~~~~~~~----~~~~L~~~l~d- 170 (280)
T 1oyz_A 98 MALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDK--STNVRRATAFAISVINDKA----TIPLLINLLKD- 170 (280)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCS--CHHHHHHHHHHHHTC---C----CHHHHHHHHTC-
T ss_pred HHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCC--CHHHHHHHHHHHHhcCCHH----HHHHHHHHHcC-
Confidence 4457888888888888888642 11334667777888775 5788889999988887643 46777766542
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhh
Q 001203 739 RFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLK 791 (1124)
Q Consensus 739 ~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~ 791 (1124)
+ +..|+.+...|++.+. ...+++...|+++|+
T Consensus 171 ---~--------------~~~vr~~a~~aL~~~~----~~~~~~~~~L~~~l~ 202 (280)
T 1oyz_A 171 ---P--------------NGDVRNWAAFAININK----YDNSDIRDCFVEMLQ 202 (280)
T ss_dssp ---S--------------SHHHHHHHHHHHHHHT----CCCHHHHHHHHHHTT
T ss_pred ---C--------------CHHHHHHHHHHHHhhc----cCcHHHHHHHHHHhc
Confidence 1 1247788888887773 234567777777776
No 15
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=93.40 E-value=1.7 Score=46.74 Aligned_cols=200 Identities=15% Similarity=0.054 Sum_probs=121.8
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHH
Q 001203 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (1124)
Q Consensus 657 ~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~ 736 (1124)
...++..| .|+|...|..|+.+|.+.. +..+...|.+.+.|+ -+.||..|+.+|+++...... ...++..+.
T Consensus 25 i~~L~~~L-~~~~~~vr~~A~~~L~~~~--~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~l~~~~~~---~~~l~~~L~ 96 (280)
T 1oyz_A 25 DDELFRLL-DDHNSLKRISSARVLQLRG--GQDAVRLAIEFCSDK--NYIRRDIGAFILGQIKICKKC---EDNVFNILN 96 (280)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHC--CHHHHHHHHHHHTCS--SHHHHHHHHHHHHHSCCCTTT---HHHHHHHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHccC--CchHHHHHHHHHcCC--CHHHHHHHHHHHHHhcccccc---chHHHHHHH
Confidence 34566676 5789999999999999865 345778899999886 568999999999998753221 333333332
Q ss_pred hcC-CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhhch--HH-------HH-----HHHH
Q 001203 737 SRR-FDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKSI--LF-------LS-----SLLK 801 (1124)
Q Consensus 737 ~~~-~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~~--~~-------~~-----~~~~ 801 (1124)
+.. -++ +..|+.+...|++.+...+....+++...|+.+|++. .. +. .++.
T Consensus 97 ~~~~~d~--------------~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~ 162 (280)
T 1oyz_A 97 NMALNDK--------------SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIP 162 (280)
T ss_dssp HHHHHCS--------------CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHH
T ss_pred HHHhcCC--------------CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 110 011 1348899999999987555555677888888888832 11 11 1233
Q ss_pred HHHHHHcccccCCCCCchhhHHHHHHHHHHHHHhcCCCchhhhhhhcccccCcCChHHHHHHHHHHhhccccccCChhHH
Q 001203 802 RIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSA 881 (1124)
Q Consensus 802 ei~r~l~~D~~~pSy~~~vt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vR~~A~~~l~~~~~~~~~~~~~ 881 (1124)
.+..+++ +-+.-|-.+++.+|.+++. .+.--.+.+..++ . +.-..||.+|.++|-.++ ...+
T Consensus 163 ~L~~~l~------d~~~~vr~~a~~aL~~~~~--~~~~~~~~L~~~l---~--d~~~~vR~~A~~aL~~~~-----~~~~ 224 (280)
T 1oyz_A 163 LLINLLK------DPNGDVRNWAAFAININKY--DNSDIRDCFVEML---Q--DKNEEVRIEAIIGLSYRK-----DKRV 224 (280)
T ss_dssp HHHHHHT------CSSHHHHHHHHHHHHHHTC--CCHHHHHHHHHHT---T--CSCHHHHHHHHHHHHHTT-----CGGG
T ss_pred HHHHHHc------CCCHHHHHHHHHHHHhhcc--CcHHHHHHHHHHh---c--CCCHHHHHHHHHHHHHhC-----CHhh
Confidence 3333332 1223355667777766420 0000012222222 2 223689999999998865 2356
Q ss_pred HHHHHHHhccCCcchh
Q 001203 882 LSLFIKSVEEEPSLRG 897 (1124)
Q Consensus 882 l~~~~~~~~~~~~~~~ 897 (1124)
+..++..+.. |.+|.
T Consensus 225 ~~~L~~~l~d-~~vr~ 239 (280)
T 1oyz_A 225 LSVLCDELKK-NTVYD 239 (280)
T ss_dssp HHHHHHHHTS-SSCCH
T ss_pred HHHHHHHhcC-ccHHH
Confidence 7777777754 55554
No 16
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=92.17 E-value=4.4 Score=49.03 Aligned_cols=206 Identities=17% Similarity=0.185 Sum_probs=111.2
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhC----CCCcH--hHHHHHHHHhcCCCchhhHHHHHHHHHHccccccccc--c-----c
Q 001203 661 INQLEKDGDVVAQAQAIAALEAL----PHLSF--NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW--A-----G 727 (1124)
Q Consensus 661 ~~QL~~drDV~aQ~eAi~~L~~~----~~~s~--~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~--~-----G 727 (1124)
+.++-.|++...|..|+.++.+. |..-. .....|.+.|.|+. .+||..|+.+|..++...... . .
T Consensus 126 l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d--~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~ 203 (591)
T 2vgl_B 126 LRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSN--PMVVANAVAALSEISESHPNSNLLDLNPQN 203 (591)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSC--HHHHHHHHHHHHHHTTSCCSCCSCCCHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCC--hhHHHHHHHHHHHHHhhCCCccchhccHHH
Confidence 45677899999999999888754 32211 24578888888864 799999999999988654321 1 2
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCChHHHHH---HHHHHhhc--hHH-------
Q 001203 728 LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVE---FVLQLLKS--ILF------- 795 (1124)
Q Consensus 728 ~~~L~k~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~---fLldll~~--~~~------- 795 (1124)
+.+|++...+ | | =++|..+.++++.+... .+.++.+ .|+.+|++ ..-
T Consensus 204 ~~~Ll~~l~~--~---------~-------~~~q~~il~~l~~l~~~---~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~ 262 (591)
T 2vgl_B 204 INKLLTALNE--C---------T-------EWGQIFILDCLSNYNPK---DDREAQSICERVTPRLSHANSAVVLSAVKV 262 (591)
T ss_dssp HHHHHHHHHH--C---------C-------HHHHHHHHHHHHTSCCC---SHHHHHHHHHHHTTCSCSSTTHHHHHHHHH
T ss_pred HHHHHHcCCC--C---------C-------chHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 4455555443 1 1 13566666666655421 2333332 33333331 110
Q ss_pred --------------HHHHHHHHHHHHcccccCCCCCchhhHHHHHHHHHHHHHhcCCCchhhhhhhcccccCcCChHHHH
Q 001203 796 --------------LSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVR 861 (1124)
Q Consensus 796 --------------~~~~~~ei~r~l~~D~~~pSy~~~vt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vR 861 (1124)
+..++..+...|- .+.-+-. -|-..+|+++.++....-..+. ..+..++ ...+....||
T Consensus 263 i~~l~~~~~~~~~~~~~~~~~~~~~L~--~L~~~d~-~vr~~aL~~l~~i~~~~p~~~~-~~~~~~~---~~~~d~~~Ir 335 (591)
T 2vgl_B 263 LMKFLELLPKDSDYYNMLLKKLAPPLV--TLLSGEP-EVQYVALRNINLIVQKRPEILK-QEIKVFF---VKYNDPIYVK 335 (591)
T ss_dssp HHHSCCSCCBTTBSHHHHHHHTHHHHH--HHTTSCH-HHHHHHHHHHHHHHHHCCSTTT-TCTTTTS---CCTTSCHHHH
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHH--HHhcCCc-cHHHHHHHHHHHHHHhChHHHH-HHHHhhe---eccCChHHHH
Confidence 1111111111000 1111333 3445677888877543222111 1111111 2223348899
Q ss_pred HHHHHHhhccccccCChhHHHHHHHHHhcc-CCcchh
Q 001203 862 VEASRALLDLEFHCNGIDSALSLFIKSVEE-EPSLRG 897 (1124)
Q Consensus 862 ~~A~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~ 897 (1124)
..|++.|..++- ..+.+.++.-+++++.. |+.+|.
T Consensus 336 ~~al~~L~~l~~-~~nv~~iv~~L~~~l~~~d~~~r~ 371 (591)
T 2vgl_B 336 LEKLDIMIRLAS-QANIAQVLAELKEYATEVDVDFVR 371 (591)
T ss_dssp HHHHHHHHHTCC-SSTHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHHCC-hhhHHHHHHHHHHHHhcCCHHHHH
Confidence 999999998763 34556677777777754 455554
No 17
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=91.16 E-value=1.3 Score=45.06 Aligned_cols=97 Identities=31% Similarity=0.309 Sum_probs=66.9
Q ss_pred HHhhCCCcHHHHHHHHHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHHhcCCCC
Q 001203 663 QLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDE 742 (1124)
Q Consensus 663 QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~~~~~~~ 742 (1124)
++-.|+|...|..|+.+|...... .+...|.+.|.|+ -..||..|+.+|+++..++ ....|+++.+. +
T Consensus 52 ~~l~~~~~~vr~~a~~~L~~~~~~--~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~d----~ 119 (201)
T 3ltj_A 52 KALKDEDAWVRRAAADALGQIGDE--RAVEPLIKALKDE--DGWVRQSAAVALGQIGDER----AVEPLIKALKD----E 119 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCG--GGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGG----GHHHHHHHTTC----S
T ss_pred HHHcCCCHHHHHHHHHHHHhhCCH--HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcHH----HHHHHHHHHcC----C
Confidence 344678888888888888876432 3567788888775 5778888888888887653 35666655431 1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhh
Q 001203 743 NIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLK 791 (1124)
Q Consensus 743 ~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~ 791 (1124)
+..|+.+...+++.+.+ +++...|+.+|+
T Consensus 120 --------------~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~ 148 (201)
T 3ltj_A 120 --------------DWFVRIAAAFALGEIGD------ERAVEPLIKALK 148 (201)
T ss_dssp --------------SHHHHHHHHHHHHHHTC------GGGHHHHHHHTT
T ss_pred --------------CHHHHHHHHHHHHHhCC------HHHHHHHHHHHc
Confidence 13477888888888753 356667777777
No 18
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=90.58 E-value=0.12 Score=49.71 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=60.6
Q ss_pred CCHHHHHHHHhhCCCcHHHHHHHHHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHH
Q 001203 655 QPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKF 734 (1124)
Q Consensus 655 qp~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~ 734 (1124)
++......++-+|.|...|..|+.+|.+.... . +..|.+.|.|+ -+.||..|+.+|+++..++ .+..|++.
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--~-~~~L~~~L~d~--~~~vR~~A~~aL~~~~~~~----a~~~L~~~ 81 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE--A-FEPLLESLSNE--DWRIRGAAAWIIGNFQDER----AVEPLIKL 81 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST--T-HHHHHHGGGCS--CHHHHHHHHHHHGGGCSHH----HHHHHHHH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--H-HHHHHHHHcCC--CHHHHHHHHHHHHhcCCHH----HHHHHHHH
Confidence 34444455555667777777777777765432 2 36777777764 4778888888888776543 26666666
Q ss_pred HHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhh
Q 001203 735 YKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLK 791 (1124)
Q Consensus 735 f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~ 791 (1124)
.+. ++ ..|+.+...|++.+.+ +++...|+++|+
T Consensus 82 L~d----~~--------------~~VR~~A~~aL~~~~~------~~a~~~L~~~l~ 114 (131)
T 1te4_A 82 LED----DS--------------GFVRSGAARSLEQIGG------ERVRAAMEKLAE 114 (131)
T ss_dssp HHH----CC--------------THHHHHHHHHHHHHCS------HHHHHHHHHHTT
T ss_pred HcC----CC--------------HHHHHHHHHHHHHhCc------HHHHHHHHHHHh
Confidence 653 11 1477777777777752 455666666665
No 19
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=89.91 E-value=1.7 Score=44.51 Aligned_cols=134 Identities=25% Similarity=0.253 Sum_probs=86.6
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHHhcCC
Q 001203 661 INQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRF 740 (1124)
Q Consensus 661 ~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~~~~~ 740 (1124)
+.++-.|+|...|..|+.+|..... ..+...|.+.|.|+ -..||..|+.+|+++..++ .++.|+++...
T Consensus 55 L~~~l~~~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~d--- 123 (211)
T 3ltm_A 55 LIKALKDEDAWVRRAAADALGQIGD--ERAVEPLIKALKDE--DGWVRQSAAVALGQIGDER----AVEPLIKALKD--- 123 (211)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGG----GHHHHHHHTTC---
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhCC--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcHH----HHHHHHHHHhC---
Confidence 3444567899999999999998653 23567888888775 4679999999999887653 35666665531
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhhch--H-------HH-----HHHHHHHHHH
Q 001203 741 DENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKSI--L-------FL-----SSLLKRIDRL 806 (1124)
Q Consensus 741 ~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~~--~-------~~-----~~~~~ei~r~ 806 (1124)
+ +..|+.+...+++.+.+ +++...|+.+|++. . .+ ..++..|..+
T Consensus 124 -~--------------~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~ 182 (211)
T 3ltm_A 124 -E--------------DWFVRIAAAFALGEIGD------ERAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKL 182 (211)
T ss_dssp -S--------------SHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred -C--------------CHHHHHHHHHHHHHcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 1 23588888888888853 35677788888721 1 11 1234445555
Q ss_pred HcccccCCCCCchhhHHHHHHHHHHH
Q 001203 807 LQFDRLMPSYNGILTISCIRTLTQIA 832 (1124)
Q Consensus 807 l~~D~~~pSy~~~vt~~~l~~l~~l~ 832 (1124)
++ | -..-|-.+++++|.++.
T Consensus 183 l~-d-----~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 183 AE-T-----GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HH-H-----CCHHHHHHHHHHHHC--
T ss_pred Hh-C-----CCHHHHHHHHHHHHhcC
Confidence 44 2 12346667777777653
No 20
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=88.53 E-value=0.66 Score=44.26 Aligned_cols=85 Identities=16% Similarity=0.078 Sum_probs=62.6
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHHhcCC
Q 001203 661 INQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRF 740 (1124)
Q Consensus 661 ~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~~~~~ 740 (1124)
+.++-.|+|...|..|+.+|..... ..++..|.+.|.|+ -+.||.+|+.+|+++..++ .++.|++..+.
T Consensus 47 L~~~L~d~~~~vR~~A~~aL~~~~~--~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~~~----a~~~L~~~l~d--- 115 (131)
T 1te4_A 47 LLESLSNEDWRIRGAAAWIIGNFQD--ERAVEPLIKLLEDD--SGFVRSGAARSLEQIGGER----VRAAMEKLAET--- 115 (131)
T ss_dssp HHHGGGCSCHHHHHHHHHHHGGGCS--HHHHHHHHHHHHHC--CTHHHHHHHHHHHHHCSHH----HHHHHHHHTTS---
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcHH----HHHHHHHHHhC---
Confidence 3445568999999999999998753 45678899999885 6899999999999987543 36666655431
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHh
Q 001203 741 DENIGLPRPNDFRDFSEYFVLEAIPHAVAMV 771 (1124)
Q Consensus 741 ~~~~~ipk~NdFsd~~~Yfvqkaip~ala~v 771 (1124)
+ +..|+.+...||+.|
T Consensus 116 -~--------------~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 116 -G--------------TGFARKVAVNYLETH 131 (131)
T ss_dssp -C--------------CTHHHHHHHHHGGGC
T ss_pred -C--------------CHHHHHHHHHHHHhC
Confidence 1 124777777777653
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=87.00 E-value=11 Score=45.37 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=58.8
Q ss_pred hCCCcHHHHHHHHHHHhCCCCc--HhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHHhcCCCCC
Q 001203 666 KDGDVVAQAQAIAALEALPHLS--FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDEN 743 (1124)
Q Consensus 666 ~drDV~aQ~eAi~~L~~~~~~s--~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~~~~~~~~ 743 (1124)
+|+|..-|.-|+++|+...... ......|.+.+.|+ -..||..||.||.++.....+-.--..++..+.+...+++
T Consensus 96 ~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~--~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d 173 (591)
T 2vgl_B 96 EDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDE--DPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSN 173 (591)
T ss_dssp SSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCS--CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSC
T ss_pred CCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCC
Confidence 4678888999999999874322 12344588888875 5789999999999987532221101134455555444432
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHhhccC
Q 001203 744 IGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD 775 (1124)
Q Consensus 744 ~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~ 775 (1124)
..|+.+-..|+..+...+
T Consensus 174 --------------~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 174 --------------PMVVANAVAALSEISESH 191 (591)
T ss_dssp --------------HHHHHHHHHHHHHHTTSC
T ss_pred --------------hhHHHHHHHHHHHHHhhC
Confidence 246666666666665543
No 22
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=86.39 E-value=11 Score=45.90 Aligned_cols=200 Identities=12% Similarity=0.047 Sum_probs=110.6
Q ss_pred hCCCcHHHHHHHHHHHhCCCCcHh----HHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHHhcCCC
Q 001203 666 KDGDVVAQAQAIAALEALPHLSFN----VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFD 741 (1124)
Q Consensus 666 ~drDV~aQ~eAi~~L~~~~~~s~~----~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~~~~~~ 741 (1124)
.++|-.-|+-|+.+|......... ....+..++.|+. --||..|...|.+++++.+--.=+..|++++.+ .
T Consensus 323 ~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d--~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~--~- 397 (618)
T 1w63_A 323 LNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLD--VSIKRRAMELSFALVNGNNIRGMMKELLYFLDS--C- 397 (618)
T ss_dssp TCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSC--HHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHH--C-
T ss_pred hCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCC--hhHHHHHHHHHHHHcccccHHHHHHHHHHHHHh--C-
Confidence 457777888888887754211111 2235667788765 459999999999998875411124555555543 0
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhhch---------HHH-----------HHHHH
Q 001203 742 ENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKSI---------LFL-----------SSLLK 801 (1124)
Q Consensus 742 ~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~~---------~~~-----------~~~~~ 801 (1124)
++-++..+..+|+.+=.........+...|+++|++. ..+ ..++.
T Consensus 398 ---------------d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~ 462 (618)
T 1w63_A 398 ---------------EPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQ 462 (618)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHH
T ss_pred ---------------CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHH
Confidence 1235666777777775544444556677777777710 111 12344
Q ss_pred HHHHHHcccccCCCCCchhhHHHHHHHHHHHHHhcC----------CCchh---hhhhhcccccCcCChHHHHHHHHHHh
Q 001203 802 RIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSG----------FISLD---QVVKLIKPFRDFNTIWQVRVEASRAL 868 (1124)
Q Consensus 802 ei~r~l~~D~~~pSy~~~vt~~~l~~l~~l~~~~~~----------~~~~~---~~~~~~~~~~~~~~~~~vR~~A~~~l 868 (1124)
.+-.++.-|. .+..++ .+++-.+.+.+..... ..|.+ .+..++..| .....||..++.++
T Consensus 463 ~L~~~l~~~~---~~~~~~-~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~vr~~~lta~ 535 (618)
T 1w63_A 463 RLYKAILGDY---SQQPLV-QVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN---MSTSVTRGYALTAI 535 (618)
T ss_dssp HHHHHHHHCC---SCSHHH-HHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST---TCCHHHHHHHHHHH
T ss_pred HHHHHHhccc---ccHHHH-HHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc---CCCHHHHHHHHHHH
Confidence 4444444332 233443 3567777776543321 11111 122222222 23468999999999
Q ss_pred hccccccCChhHHHHHHHHHhccC
Q 001203 869 LDLEFHCNGIDSALSLFIKSVEEE 892 (1124)
Q Consensus 869 ~~~~~~~~~~~~~l~~~~~~~~~~ 892 (1124)
+.+..+.++..+.+.-+|.....|
T Consensus 536 ~Kl~~~~~~~~~~l~~~L~~~~~~ 559 (618)
T 1w63_A 536 MKLSTRFTCTVNRIKKVVSIYGSS 559 (618)
T ss_dssp HHHHTTCSSCHHHHHHHHHHHTTC
T ss_pred HHHHHhCcchHHHHHHHHHHhcCC
Confidence 988776655445555555444343
No 23
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=83.34 E-value=7.9 Score=45.73 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=40.8
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhCCC--Cc----HhHHHHHHHHhcCCCchhhHHHHHHHHHHcccc
Q 001203 660 WINQLEKDGDVVAQAQAIAALEALPH--LS----FNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1124)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~~~--~s----~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~ 720 (1124)
...++-.|.|...|..|+++|...-. +. ......|...+.|+ -+.||..|+.+|+.++.
T Consensus 168 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~--~~~vr~~a~~~l~~l~~ 232 (588)
T 1b3u_A 168 YFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE--QDSVRLLAVEACVNIAQ 232 (588)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCS--CHHHHTTHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHH
Confidence 34466678888888888888876411 11 12445667777775 47899999999988764
No 24
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=83.14 E-value=11 Score=44.60 Aligned_cols=265 Identities=12% Similarity=0.081 Sum_probs=124.0
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhCC---CCc-------HhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHH
Q 001203 660 WINQLEKDGDVVAQAQAIAALEALP---HLS-------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLL 729 (1124)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~~---~~s-------~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~ 729 (1124)
...++-+|.+...|..|+.+|...- ... ..+...|.+.+.|+ -|.||..|+.+|+.++..-..-.-..
T Consensus 285 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~ 362 (588)
T 1b3u_A 285 AFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA--NQHVKSALASVIMGLSPILGKDNTIE 362 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS--CHHHHHHHHTTGGGGHHHHCHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 3445557888888888887776431 111 22445677777775 68999999999999874211000123
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCC--hHHHHHHHHHHhhc--hHH----------
Q 001203 730 HLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS--PREAVEFVLQLLKS--ILF---------- 795 (1124)
Q Consensus 730 ~L~k~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~--p~~v~~fLldll~~--~~~---------- 795 (1124)
+++..|....-+++ -.|+.+...+++.+-..-|.. ...+...|..++++ +..
T Consensus 363 ~l~p~l~~~l~d~~--------------~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~ 428 (588)
T 1b3u_A 363 HLLPLFLAQLKDEC--------------PEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 428 (588)
T ss_dssp HTHHHHHHHHTCSC--------------HHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCc--------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 34444443221211 125555555555443322210 12233333333331 111
Q ss_pred ----------HHHHHHHHHHHHcccccCCCCCchhhHHHHHHHHHHHHHhcCCCchhhhhhhcccccCcCChHHHHHHHH
Q 001203 796 ----------LSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEAS 865 (1124)
Q Consensus 796 ----------~~~~~~ei~r~l~~D~~~pSy~~~vt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vR~~A~ 865 (1124)
...++.-+.++++ .-..-|-.+++.++..+........-.+.+...+..... +..+.+|.+|.
T Consensus 429 l~~~~~~~~~~~~l~~~l~~~l~------d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~-~~~~~~R~~a~ 501 (588)
T 1b3u_A 429 LAGQLGVEFFDEKLNSLCMAWLV------DHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSG-DPNYLHRMTTL 501 (588)
T ss_dssp HHHHHCGGGCCHHHHHHHHHGGG------CSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTT-CSCHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHhc------CCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhh-CCCHHHHHHHH
Confidence 1122222222221 112334456667777665322110001122222222222 33468999999
Q ss_pred HHhhccccccCCh---hHHHHHHHHHhccCCcchhhhhHHHHHhhhhhhccCCCCCCCCChHHHHHHHHHHhccccccch
Q 001203 866 RALLDLEFHCNGI---DSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNV 942 (1124)
Q Consensus 866 ~~l~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 942 (1124)
+++-.+....+.. ...+..++..+ .|+.+..+.....-.-.++.. .+. ..-.+.+...+..+.+ -.|.
T Consensus 502 ~~l~~l~~~~~~~~~~~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~-~~~----~~~~~~~~p~l~~l~~---d~d~ 572 (588)
T 1b3u_A 502 FCINVLSEVCGQDITTKHMLPTVLRMA-GDPVANVRFNVAKSLQKIGPI-LDN----STLQSEVKPILEKLTQ---DQDV 572 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHGG-GCSCHHHHHHHHHHHHHHGGG-SCH----HHHHHHHHHHHHHHTT---CSSH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhC-CCCCchHHHHHHHHHHHHHHH-hch----hhhHHHHHHHHHHHcC---CCch
Confidence 9998875432211 12333444433 455544433222222222211 111 1112455555544433 3478
Q ss_pred hhhhhHHHHHHHhh
Q 001203 943 FLRHHLFGILQILA 956 (1124)
Q Consensus 943 ~lr~~~~~~~~~l~ 956 (1124)
..|..+...+..|.
T Consensus 573 ~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 573 DVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhh
Confidence 99988888876654
No 25
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=79.86 E-value=2.4 Score=49.11 Aligned_cols=73 Identities=11% Similarity=0.160 Sum_probs=42.4
Q ss_pred CcceEEEEEEEeccccEEEEEEEeeccCCCCCCCCccCCCCCCCCCCCCCCcceeEEEEEEccCCcccc------ccccC
Q 001203 510 GCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDH------PILPM 583 (1124)
Q Consensus 510 G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpmtIri~E~DGt~eh------~v~~i 583 (1124)
|||+++|+. + .+.+.|+|+|+...... . .+....|..|+++.....+.+-.+ ..+.+
T Consensus 1 GyPvvtV~~--~--~~~~~l~Q~RFl~~~~~--------~-----~~~~~~W~IPl~~~~~~~~~~~~~~l~~~~~~i~l 63 (419)
T 3rjo_A 1 GFPLITITV--R--GRNVHMKQEHYMKGSDG--------A-----PDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVLIL 63 (419)
T ss_dssp CEEEEEEEE--E--TTEEEEEEEEEC-----------------------CCCCEEEEEEESSCSSCEEEEECSSEEEEEC
T ss_pred CCCEEEEEE--C--CCEEEEEEeeccCCCCC--------C-----CCCCeEEEEEEEEEeCCCCccceEEEecCceEEEc
Confidence 899999987 2 35788999888642110 0 012347999999976432111111 01112
Q ss_pred -CCCceEEEeeeccchh
Q 001203 584 -AGDAWQLLEIQCHSKL 599 (1124)
Q Consensus 584 -~~~~~~~~ei~~~sKy 599 (1124)
.++.|+++|.+..+.|
T Consensus 64 ~~~~~wi~~N~~~~GyY 80 (419)
T 3rjo_A 64 PEEVEWIKFNVGMNGYY 80 (419)
T ss_dssp SSCCSCEEEEESSSSCC
T ss_pred CCCCceEEEeCCccceE
Confidence 2346899999888888
No 26
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=78.63 E-value=25 Score=44.18 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=39.1
Q ss_pred hCCCcHHHHHHHHHHHhCCCCc--------HhHHHHHHHHhcCCCchhhHHHHHHHHHHccccc
Q 001203 666 KDGDVVAQAQAIAALEALPHLS--------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASE 721 (1124)
Q Consensus 666 ~drDV~aQ~eAi~~L~~~~~~s--------~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~ 721 (1124)
.|.+...|..|+.+|..+-... ..+...|.+.+.|+ -..||..|+.+|+.++..
T Consensus 184 ~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~--~~~vr~~a~~~L~~l~~~ 245 (852)
T 4fdd_A 184 KHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDE--EPEVRKNVCRALVMLLEV 245 (852)
T ss_dssp TCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHh
Confidence 4667888999999998653211 13455677777775 468999999999988753
No 27
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=75.24 E-value=16 Score=38.09 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=43.8
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhC----CC----CcHhHHHHHHHHhc-CCCchhhHHHHHHHHHHcccc
Q 001203 660 WINQLEKDGDVVAQAQAIAALEAL----PH----LSFNVVNTLNNFLS-DSKAFWRVRIEAAYALANTAS 720 (1124)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~----~~----~s~~~~~~L~~~l~-d~~~Fy~VR~~Aa~aLa~~~~ 720 (1124)
+...+ +|+|..-|.+|+..|... +. .-..++.+|.+.+. |. -..||..|+.+|+.++.
T Consensus 20 l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~ 86 (242)
T 2qk2_A 20 FYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS--NVVLVAMAGKCLALLAK 86 (242)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHH
T ss_pred HHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHH
Confidence 45555 689999999999888643 21 12246778888885 74 78899999999999885
No 28
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=74.69 E-value=31 Score=41.98 Aligned_cols=268 Identities=13% Similarity=0.129 Sum_probs=125.7
Q ss_pred hCCCcHHHHHHHHHHHhCCCCc--HhHHHHHHHHh--cCCCchhhHHHHHHHHHHcccccccccc---c-HHHHHHHHHh
Q 001203 666 KDGDVVAQAQAIAALEALPHLS--FNVVNTLNNFL--SDSKAFWRVRIEAAYALANTASEETDWA---G-LLHLVKFYKS 737 (1124)
Q Consensus 666 ~drDV~aQ~eAi~~L~~~~~~s--~~~~~~L~~~l--~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~---G-~~~L~k~f~~ 737 (1124)
+|++-.-+--|+++|+....+. ..+...+.++| .|. ---||..||.||.++-....+-. + +..|.++
T Consensus 121 ~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~--~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~l--- 195 (621)
T 2vgl_A 121 ASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDT--MDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHL--- 195 (621)
T ss_dssp HSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSS--CHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHH---
T ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHH---
Confidence 3677788999999999864322 12333466777 664 56799999999998754321111 1 2222222
Q ss_pred cCCCCCCCCCCCCCCC--------ChHHHHHHHHHHHHHHHhhc--cCCCCh-----------HHHHHHHHHHhh-----
Q 001203 738 RRFDENIGLPRPNDFR--------DFSEYFVLEAIPHAVAMVRA--ADNKSP-----------REAVEFVLQLLK----- 791 (1124)
Q Consensus 738 ~~~~~~~~ipk~NdFs--------d~~~Yfvqkaip~ala~vr~--~~g~~p-----------~~v~~fLldll~----- 791 (1124)
-++++.++ +.|-++ |-.. ....+|.++..+.. ..+.+| +-.+-.|+++|.
T Consensus 196 -L~d~d~~V-~~~a~~~l~~i~~~~~~~--~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~ 271 (621)
T 2vgl_A 196 -LNDQHLGV-VTAATSLITTLAQKNPEE--FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP 271 (621)
T ss_dssp -TTCSCHHH-HHHHHHHHHHHHHHCHHH--HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC
T ss_pred -hCCCCccH-HHHHHHHHHHHHHhChHH--HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC
Confidence 12322110 000000 0000 01233444433321 113343 456667888887
Q ss_pred -chHHHHHHHHHHHHHHcc-cccCC-----CCCc---hhhHHHHHHHHHHHHHhcCCCch-hhhhhhcccccCcCChHHH
Q 001203 792 -SILFLSSLLKRIDRLLQF-DRLMP-----SYNG---ILTISCIRTLTQIALKLSGFISL-DQVVKLIKPFRDFNTIWQV 860 (1124)
Q Consensus 792 -~~~~~~~~~~ei~r~l~~-D~~~p-----Sy~~---~vt~~~l~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v 860 (1124)
+....+.+.+=++++++. +. .| .+.| -|...|.+++..+. ...+. ......+..+.. ..-.++
T Consensus 272 ~d~~~~~~l~~~L~~il~~~~~-~~ks~~l~~~n~~~aVl~ea~~~i~~l~----~~~~~~~~~~~~L~~~L~-~~~~ni 345 (621)
T 2vgl_A 272 EDPAVRGRLTECLETILNKAQE-PPKSKKVQHSNAKNAVLFEAISLIIHHD----SEPNLLVRACNQLGQFLQ-HRETNL 345 (621)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHS-CCSCSSHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHSS-CSCHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcc-CcccccccccchHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHhc-CCCcch
Confidence 122233344444444432 10 12 2323 67778888887652 11110 111111222222 123589
Q ss_pred HHHHHHHhhccccccCChh---HHHHHHHHHhccCCcchhhhhHHHHHhhhhhhccCCCCCCCCChHHHHHHHHHHhccc
Q 001203 861 RVEASRALLDLEFHCNGID---SALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRI 937 (1124)
Q Consensus 861 R~~A~~~l~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 937 (1124)
|..|+++|..+....+..+ .-...++..+..|+....+.+-+-.+..++. . + +-..++..+.....
T Consensus 346 ry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~----~-~----Nv~~Iv~eL~~yl~-- 414 (621)
T 2vgl_A 346 RYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD----R-S----NAQQIVAEMLSYLE-- 414 (621)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC----H-H----HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC----h-h----hHHHHHHHHHHHHH--
Confidence 9999999999865432121 1233455545434443332211111222210 0 0 22334432222222
Q ss_pred cccchhhhhhHHHHHHHhhcCCc
Q 001203 938 AFNNVFLRHHLFGILQILAGRAP 960 (1124)
Q Consensus 938 ~~~~~~lr~~~~~~~~~l~~~~~ 960 (1124)
..|...|..++..+-.++-+|+
T Consensus 415 -~~d~~~~~~~v~~I~~la~k~~ 436 (621)
T 2vgl_A 415 -TADYSIREEIVLKVAILAEKYA 436 (621)
T ss_dssp -HCCHHHHHHHHHHHHHHHHHHC
T ss_pred -hcCHHHHHHHHHHHHHHHHhcC
Confidence 2467777777777777777665
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=72.35 E-value=59 Score=36.63 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=72.6
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhCCCCc---------HhHHHHHHHHhcCCCchhhHHHHHHHHHHccccccc------
Q 001203 659 MWINQLEKDGDVVAQAQAIAALEALPHLS---------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 723 (1124)
Q Consensus 659 m~~~QL~~drDV~aQ~eAi~~L~~~~~~s---------~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~------ 723 (1124)
..+..|+.+.|...|.+|+..|......+ ..++..|.+.|.++ -..||..|+.+|+.++....
T Consensus 68 ~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~ 145 (450)
T 2jdq_A 68 RFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE--FEDVQEQAVWALGNIAGDSTMCRDYV 145 (450)
T ss_dssp HHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 34445555448899999999988653221 12566788888774 67999999999999886432
Q ss_pred -ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCC-----hHHHHHHHHHHhh
Q 001203 724 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLK 791 (1124)
Q Consensus 724 -~~~G~~~L~k~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~-----p~~v~~fLldll~ 791 (1124)
...+++.|+++.+. + .+--+++....+++.+-...+.. -..+...|+++|+
T Consensus 146 ~~~~~i~~L~~~l~~---~--------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~ 202 (450)
T 2jdq_A 146 LDCNILPPLLQLFSK---Q--------------NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202 (450)
T ss_dssp HHTTCHHHHHHHTTS---C--------------CCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT
T ss_pred HHCCCHHHHHHHhcC---C--------------CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 12357777776652 0 01246777778887775432111 1356667777776
No 30
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=71.15 E-value=41 Score=40.81 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=65.1
Q ss_pred hhCCCcHHHHHHHHHHHhCCCCc--Hh----HHHHHHHHhc-CCCchhhHHHHHHHHHHcccccccccccHHHHHHHHHh
Q 001203 665 EKDGDVVAQAQAIAALEALPHLS--FN----VVNTLNNFLS-DSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (1124)
Q Consensus 665 ~~drDV~aQ~eAi~~L~~~~~~s--~~----~~~~L~~~l~-d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~~ 737 (1124)
-.++|-.-|+-|++.|.+.-... .. ....+.++|. |+... ||..|...|.+++++.+--.=+..|.++..+
T Consensus 338 L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~--Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~ 415 (621)
T 2vgl_A 338 LQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVS--VRQRAVDLLYAMCDRSNAQQIVAEMLSYLET 415 (621)
T ss_dssp SSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHH--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHh--HHHHHHHHHHHHcChhhHHHHHHHHHHHHHh
Confidence 34688899999998888653221 11 2234556677 76633 9999999999999875411113444444443
Q ss_pred cCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhh
Q 001203 738 RRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLK 791 (1124)
Q Consensus 738 ~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~ 791 (1124)
++ .-+++.+..+|+.+=........-..++|+++|+
T Consensus 416 --~d----------------~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~ 451 (621)
T 2vgl_A 416 --AD----------------YSIREEIVLKVAILAEKYAVDYTWYVDTILNLIR 451 (621)
T ss_dssp --CC----------------HHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred --cC----------------HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 11 1234445566666533333445667788888887
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=70.74 E-value=30 Score=40.73 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=52.6
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhCCCCcHh---------HHHHHHHHhcCCCchhhHHHHHHHHHHccccccc-------
Q 001203 660 WINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 723 (1124)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~---------~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~------- 723 (1124)
++.-|+.+.+...|.+|..+|.....++.. ++..|.+.|.++ .-.||..|+.||++++....
T Consensus 105 LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~--~~~v~e~A~~aL~nLa~d~~~~r~~v~ 182 (510)
T 3ul1_B 105 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLVI 182 (510)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 455566666788899999999875433322 345688888764 67999999999999985422
Q ss_pred ccccHHHHHHHHH
Q 001203 724 DWAGLLHLVKFYK 736 (1124)
Q Consensus 724 ~~~G~~~L~k~f~ 736 (1124)
...|+..|+...+
T Consensus 183 ~~G~i~~Ll~lL~ 195 (510)
T 3ul1_B 183 KHGAIDPLLALLA 195 (510)
T ss_dssp HTTCHHHHHHHTC
T ss_pred HcCChHHHHHHHH
Confidence 2245777777665
No 32
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=70.28 E-value=50 Score=39.94 Aligned_cols=221 Identities=13% Similarity=0.161 Sum_probs=108.8
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHhC----CCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccc----ccc-H
Q 001203 658 QMWINQLEKDGDVVAQAQAIAALEAL----PHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD----WAG-L 728 (1124)
Q Consensus 658 ~m~~~QL~~drDV~aQ~eAi~~L~~~----~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~----~~G-~ 728 (1124)
..-+.++-.|++..-|-.|+.++.+. |..-......|.+.|.|+ =.+|+..|+.+|..+...... +.. .
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~--d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v 221 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEK--NHGVLHTSVVLLTEMCERSPDMLAHFRKLV 221 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCC--CHHHHHHHHHHHHHHCCSHHHHHHHHHTTH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCC--CHhHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 34455566677777777777777543 221112233345555554 357888888888877654321 112 2
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCChH---HHHHHHHHHhhc------h------
Q 001203 729 LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR---EAVEFVLQLLKS------I------ 793 (1124)
Q Consensus 729 ~~L~k~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~---~v~~fLldll~~------~------ 793 (1124)
+.|++..+.. +. ++.+..-++....+=++|..+..+++.+-.. .|. .+.++|..+++. .
T Consensus 222 ~~l~~~L~~~-~~--~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~---~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ 295 (618)
T 1w63_A 222 PQLVRILKNL-IM--SGYSPEHDVSGISDPFLQVRILRLLRILGRN---DDDSSEAMNDILAQVATNTETSKNVGNAILY 295 (618)
T ss_dssp HHHHHHHHHH-HH--SCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT---CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHH
T ss_pred HHHHHHHHHH-Hc--CCCCccccccCCCCChHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHhccccccchHHHHHH
Confidence 3344433321 00 0111111222223345677777777776432 233 234455555530 0
Q ss_pred -------------HHHHHHHHHHHHHHcccccCCCCCchhhHHHHHHHHHHHHHhcCCC-c-hhhhhhhcccccCcCChH
Q 001203 794 -------------LFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFI-S-LDQVVKLIKPFRDFNTIW 858 (1124)
Q Consensus 794 -------------~~~~~~~~ei~r~l~~D~~~pSy~~~vt~~~l~~l~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 858 (1124)
.....+++-+-+++. |-..-|--.+|.+|.+++...-..+ + .+.++..+ .+...
T Consensus 296 ea~~~i~~l~~~~~l~~~a~~~L~~~L~------~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l-----~d~d~ 364 (618)
T 1w63_A 296 ETVLTIMDIKSESGLRVLAINILGRFLL------NNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCL-----KDLDV 364 (618)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHT------CSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGG-----GSSCH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHh------CCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHc-----cCCCh
Confidence 000112222333321 2233444456777777754211111 0 11222211 22337
Q ss_pred HHHHHHHHHhhccccccCChhHHHHHHHHHhcc-CCcchhh
Q 001203 859 QVRVEASRALLDLEFHCNGIDSALSLFIKSVEE-EPSLRGQ 898 (1124)
Q Consensus 859 ~vR~~A~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 898 (1124)
.||..|+++|..+.-. ...+.++.-++.++.. |+.+|..
T Consensus 365 ~Ir~~alelL~~l~~~-~nv~~iv~eL~~~l~~~d~e~r~~ 404 (618)
T 1w63_A 365 SIKRRAMELSFALVNG-NNIRGMMKELLYFLDSCEPEFKAD 404 (618)
T ss_dssp HHHHHHHHHHHHHCCS-SSTHHHHHHHHHHHHHCCHHHHHH
T ss_pred hHHHHHHHHHHHHccc-ccHHHHHHHHHHHHHhCCHHHHHH
Confidence 8999999999998653 3355678878887754 4555553
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=68.62 E-value=20 Score=37.14 Aligned_cols=80 Identities=23% Similarity=0.189 Sum_probs=54.9
Q ss_pred CCHHHHHHHHhhCCCcHHHHHHHHHHHhCCCCc---------HhHHHHHHHHhcCCCchhhHHHHHHHHHHccccccc--
Q 001203 655 QPVQMWINQLEKDGDVVAQAQAIAALEALPHLS---------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-- 723 (1124)
Q Consensus 655 qp~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s---------~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~-- 723 (1124)
.++|.+...+-++.|...|.+|+..|...-..+ ..++..|.+.|.++. ..||..|+.+|+.++....
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCHHH
Confidence 455777777778899999999999995321000 014567888888764 8999999999999886321
Q ss_pred -----ccccHHHHHHHHH
Q 001203 724 -----DWAGLLHLVKFYK 736 (1124)
Q Consensus 724 -----~~~G~~~L~k~f~ 736 (1124)
...|++.|++..+
T Consensus 89 ~~~i~~~g~i~~L~~lL~ 106 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLS 106 (252)
T ss_dssp HHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHcCCHHHHHHHHc
Confidence 1235666665554
No 34
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=66.65 E-value=1e+02 Score=31.24 Aligned_cols=71 Identities=32% Similarity=0.293 Sum_probs=48.8
Q ss_pred HhhCCCcHHHHHHHHHHHhCCCCcH---------hHHHHHHHHhcCCCchhhHHHHHHHHHHccccccc-------cccc
Q 001203 664 LEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-------DWAG 727 (1124)
Q Consensus 664 L~~drDV~aQ~eAi~~L~~~~~~s~---------~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~-------~~~G 727 (1124)
+-++.|...|.+|+..|......+. .++..|.+.|.++. -.||..|+.+|+.++.... ...|
T Consensus 10 ~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 87 (252)
T 4hxt_A 10 LLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIASGPDEAIKAIVDAGG 87 (252)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcCChHHHHHHHHCCC
Confidence 3355678889999998886533222 24667888888764 8999999999999886421 1134
Q ss_pred HHHHHHHHH
Q 001203 728 LLHLVKFYK 736 (1124)
Q Consensus 728 ~~~L~k~f~ 736 (1124)
++.|+++.+
T Consensus 88 i~~l~~ll~ 96 (252)
T 4hxt_A 88 VEVLVKLLT 96 (252)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHc
Confidence 666665554
No 35
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=66.42 E-value=70 Score=37.62 Aligned_cols=270 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhCCCCcHh---------HHHHHHHHhcCCCchhhHHHHHHHHHHccccccc-------
Q 001203 660 WINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 723 (1124)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~---------~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~------- 723 (1124)
.+.-|..+.+...|.+|..+|.....++.. ++..|.+.|.++ .-.||..|+.||+.++....
T Consensus 124 Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~--~~~v~e~A~~aL~nLa~~~~~~r~~i~ 201 (529)
T 3tpo_A 124 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGAGSAFRDLVI 201 (529)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhccCHHHHHHHH
Q ss_pred ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCCh-----HHHHHHHHHHhh--chHHH
Q 001203 724 DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP-----REAVEFVLQLLK--SILFL 796 (1124)
Q Consensus 724 ~~~G~~~L~k~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p-----~~v~~fLldll~--~~~~~ 796 (1124)
...|+..|+..... .+..+.... +++....+++.+-......+ ..+...|..+|+ +....
T Consensus 202 ~~g~i~~Ll~lL~~--~~~~~~~~~-----------~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~ 268 (529)
T 3tpo_A 202 KHGAIDPLLALLAV--PDLSTLACG-----------YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 268 (529)
T ss_dssp HTTCHHHHHHTTCS--SCGGGSCHH-----------HHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HcCCcHHHHHHHhc--cchhHhHHH-----------HHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHH
Q ss_pred HHHHHHHHHHHccc-----------------ccCCCCCchhhHHHHHHHHHH---------HHHhcCCCchhhhhhhccc
Q 001203 797 SSLLKRIDRLLQFD-----------------RLMPSYNGILTISCIRTLTQI---------ALKLSGFISLDQVVKLIKP 850 (1124)
Q Consensus 797 ~~~~~ei~r~l~~D-----------------~~~pSy~~~vt~~~l~~l~~l---------~~~~~~~~~~~~~~~~~~~ 850 (1124)
..++..|..+..-+ .++-+-..-+-..|+.+|..+ .+--.|.++. +..++..
T Consensus 269 ~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~--L~~LL~~ 346 (529)
T 3tpo_A 269 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAV--FPSLLTN 346 (529)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGG--HHHHTTC
T ss_pred HHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHH--HHHHHcC
Q ss_pred ccCcCChHHHHHHHHHHhhccccccCChh------HHHHHHHHHhccCCcchhhhhHHHHHhhhhhhccCCCCCCCCChH
Q 001203 851 FRDFNTIWQVRVEASRALLDLEFHCNGID------SALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTV 924 (1124)
Q Consensus 851 ~~~~~~~~~vR~~A~~~l~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 924 (1124)
-... +|..|..+|--+........ .++..++..+ .++....+......+.+++.-........-++..
T Consensus 347 ~~~~-----i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g 420 (529)
T 3tpo_A 347 PKTN-----IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCG 420 (529)
T ss_dssp SSHH-----HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred CCHH-----HHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCc
Q ss_pred HHHHHHHHHhccccccchhhhhhHHHHHHHhh
Q 001203 925 TLVALLNLLESRIAFNNVFLRHHLFGILQILA 956 (1124)
Q Consensus 925 ~l~~~~~~~~~~~~~~~~~lr~~~~~~~~~l~ 956 (1124)
-+..|..+|.+ .|..++..+.+.|.-+.
T Consensus 421 ~i~~L~~LL~~----~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 421 IIEPLMNLLSA----KDTKIIQVILDAISNIF 448 (529)
T ss_dssp CHHHHHHGGGC----SCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhcC----CCHHHHHHHHHHHHHHH
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=65.16 E-value=28 Score=34.94 Aligned_cols=117 Identities=22% Similarity=0.189 Sum_probs=76.7
Q ss_pred CCHHHHHHHHhhCCCcHHHHHHHHHHHhCCCCcHh---------HHHHHHHHhcCCCchhhHHHHHHHHHHccccccc--
Q 001203 655 QPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-- 723 (1124)
Q Consensus 655 qp~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~---------~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~-- 723 (1124)
.+.+.....|-++.|...|.+|+.+|......+.. ++..|.+.|.++ -..||..|+.+|+.++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcHH
Confidence 35677888888999999999999999865322221 355688888775 57999999999999874321
Q ss_pred -----ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCC-----hHHHHHHHHHHhh
Q 001203 724 -----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLK 791 (1124)
Q Consensus 724 -----~~~G~~~L~k~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~-----p~~v~~fLldll~ 791 (1124)
...|++.|+++.+.. +.-+++....+++.+=..+... -..+...|+++|+
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 148 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSP------------------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 148 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCS------------------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHcCC------------------cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc
Confidence 124678888776531 1246777777777774321100 1124566777777
No 37
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=62.56 E-value=97 Score=36.17 Aligned_cols=97 Identities=23% Similarity=0.231 Sum_probs=63.9
Q ss_pred CHHHHHHHHhhCCCcHHHHHHHHHHHhCCC----Cc------HhHHHHHHHHhcCCCchhhHHHHHHHHHHccccccc--
Q 001203 656 PVQMWINQLEKDGDVVAQAQAIAALEALPH----LS------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-- 723 (1124)
Q Consensus 656 p~~m~~~QL~~drDV~aQ~eAi~~L~~~~~----~s------~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~-- 723 (1124)
.-...+..|+ +.|...|..|+..|.+.-+ .. ..++..|.+.|.++ .-..||.+||.+|+.++....
T Consensus 88 ~i~~lv~~L~-s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~-~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 88 ELPQMTQQLN-SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp CHHHHHHHHS-CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHH
Confidence 3455666665 4589999999999986421 11 12456688888764 268999999999999886321
Q ss_pred -----ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhh
Q 001203 724 -----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVR 772 (1124)
Q Consensus 724 -----~~~G~~~L~k~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr 772 (1124)
.-.+++.|++..++. +--++.....+|+.+=
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~------------------~~~vr~~A~~aL~~l~ 201 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTG------------------SVEVKEQAIWALGNVA 201 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHC------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCC------------------CHHHHHHHHHHHHHHh
Confidence 124578888877741 1136666666776664
No 38
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=59.38 E-value=2.3e+02 Score=36.95 Aligned_cols=255 Identities=11% Similarity=0.084 Sum_probs=119.4
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhC-CCC--------cHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHH
Q 001203 661 INQLEKDGDVVAQAQAIAALEAL-PHL--------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHL 731 (1124)
Q Consensus 661 ~~QL~~drDV~aQ~eAi~~L~~~-~~~--------s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L 731 (1124)
..++ .+.|-..|..|...|.+. ... ...+...|.+.|.|+ -+.||..|+.+|+.++..-.. ..+..+
T Consensus 12 L~~l-~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~--~~~vR~~A~~~L~~l~~~~~~-~~~~~i 87 (1230)
T 1u6g_C 12 LEKM-TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK--NGEVQNLAVKCLGPLVSKVKE-YQVETI 87 (1230)
T ss_dssp HHHT-TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHTTSCH-HHHHHH
T ss_pred HHhc-CCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhCCH-HHHHHH
Confidence 3443 457778888888777642 111 113566788888774 699999999999987753211 112222
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCC---hHHHHHHHHHHhhchHHHHHHHHHHHHHHc
Q 001203 732 VKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS---PREAVEFVLQLLKSILFLSSLLKRIDRLLQ 808 (1124)
Q Consensus 732 ~k~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~---p~~v~~fLldll~~~~~~~~~~~ei~r~l~ 808 (1124)
+...-+..-+++ + -++.+.-.+++.+=..-+.. +... ..+...++..+.+.+.
T Consensus 88 ~~~Ll~~l~d~~---~-----------~vR~~a~~~L~~i~~~l~~~~~~~~~~----------~~~~~~llp~L~~~l~ 143 (1230)
T 1u6g_C 88 VDTLCTNMLSDK---E-----------QLRDISSIGLKTVIGELPPASSGSALA----------ANVCKKITGRLTSAIA 143 (1230)
T ss_dssp HHHHHHHTTCSS---S-----------HHHHHHHHHHHHHHHHCC-----CCTH----------HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCc---H-----------HHHHHHHHHHHHHHHhCCCcccccchH----------HHHHHHHHHHHHHHHc
Confidence 222222111111 0 14455555555543322211 0000 0122333333333332
Q ss_pred ccccCCCCCchhhHHHHHHHHHHHHHhcCCC-c-hhhhhhhcccccCcCChHHHHHHHHHHhhccccccC--ChhHHHHH
Q 001203 809 FDRLMPSYNGILTISCIRTLTQIALKLSGFI-S-LDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCN--GIDSALSL 884 (1124)
Q Consensus 809 ~D~~~pSy~~~vt~~~l~~l~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~vR~~A~~~l~~~~~~~~--~~~~~l~~ 884 (1124)
| +...-+..+|+.++.++.......+ | .+.+...+.......+ ..||.+|.+||-.+....+ -....+..
T Consensus 144 -~----~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~-~~vR~~a~~al~~l~~~~~~~~~~~~l~~ 217 (1230)
T 1u6g_C 144 -K----QEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGNIVFVDLIEH 217 (1230)
T ss_dssp -C----CSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC----CTTHHHH
T ss_pred -C----CCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 1 1122344566676666542211111 2 1222222222222222 4799999999988764322 12245777
Q ss_pred HHHHhccC--Ccchhhh-hHHHHHhhhhhhccCCCCCCCCChHHHHHHHHHHhccccccchhhhhhHHHHHHHhhcC
Q 001203 885 FIKSVEEE--PSLRGQV-KLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGR 958 (1124)
Q Consensus 885 ~~~~~~~~--~~~~~~~-~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~lr~~~~~~~~~l~~~ 958 (1124)
++..+..+ +..|... .....+...++- .-... .+.++..+....+ ..|..+|..+...+..+...
T Consensus 218 l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~--l~~l~~~ll~~l~---d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 218 LLSELSKNDSMSTTRTYIQCIAAISRQAGH----RIGEY--LEKIIPLVVKFCN---VDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHHTCSSCSCTTHHHHHHHHHHHSSG----GGTTS--CTTHHHHHHHHHS---SCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHhccCCchhHHHHHHHHHHHHHHHhHH----HHHHH--HHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHH
Confidence 77777554 3344433 222222222111 00011 2345554433333 23577888777777766654
No 39
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=57.33 E-value=88 Score=36.44 Aligned_cols=76 Identities=24% Similarity=0.212 Sum_probs=51.1
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHhCCCCcHh---------HHHHHHHHhcCCCchhhHHHHHHHHHHccccccc-----
Q 001203 658 QMWINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET----- 723 (1124)
Q Consensus 658 ~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~---------~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~----- 723 (1124)
-..+..|+.+.+...|.+|+.+|......+.. ++..|.+.|.++ -..||..|+.+|++++....
T Consensus 120 ~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~ 197 (528)
T 4b8j_A 120 PRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS--SDDVREQAVWALGNVAGDSPKCRDL 197 (528)
T ss_dssp HHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCChhhHHH
Confidence 34555665544488899999999865433221 456788888774 67999999999999875422
Q ss_pred --ccccHHHHHHHH
Q 001203 724 --DWAGLLHLVKFY 735 (1124)
Q Consensus 724 --~~~G~~~L~k~f 735 (1124)
...+++.|++..
T Consensus 198 i~~~g~l~~Ll~lL 211 (528)
T 4b8j_A 198 VLANGALLPLLAQL 211 (528)
T ss_dssp HHHTTCHHHHHHTC
T ss_pred HHHCCcHHHHHHHH
Confidence 113566676554
No 40
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=56.04 E-value=99 Score=35.97 Aligned_cols=97 Identities=26% Similarity=0.267 Sum_probs=62.8
Q ss_pred CHHHHHHHHhhCCCcHHHHHHHHHHHhCCC----CcH------hHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccc-
Q 001203 656 PVQMWINQLEKDGDVVAQAQAIAALEALPH----LSF------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD- 724 (1124)
Q Consensus 656 p~~m~~~QL~~drDV~aQ~eAi~~L~~~~~----~s~------~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~- 724 (1124)
.--..+..|+ +.|...|.+|+.+|.+.-+ ... .++..|.+.|.+. ....||.+||.+|++++.....
T Consensus 75 ~l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 75 SLPAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE-DFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp CHHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHH
Confidence 3456677774 5689999999999875411 111 1356788888764 2489999999999998864211
Q ss_pred ------cccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhh
Q 001203 725 ------WAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVR 772 (1124)
Q Consensus 725 ------~~G~~~L~k~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr 772 (1124)
..+++.|+++.+. + | --++.....+|+.+=
T Consensus 153 ~~~~~~~g~i~~L~~lL~~----~-------~-------~~v~~~a~~aL~~l~ 188 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGS----S-------S-------DDVREQAVWALGNVA 188 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTC----S-------C-------HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHhcC----C-------C-------HHHHHHHHHHHHHHh
Confidence 1356677766542 1 1 136666667777663
No 41
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=52.98 E-value=70 Score=33.85 Aligned_cols=58 Identities=9% Similarity=0.109 Sum_probs=43.4
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHh-CC---------CCc-HhHHHHHHHHh-cCCCchhhHHHHHHHHHHcccc
Q 001203 660 WINQLEKDGDVVAQAQAIAALEA-LP---------HLS-FNVVNTLNNFL-SDSKAFWRVRIEAAYALANTAS 720 (1124)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~-~~---------~~s-~~~~~~L~~~l-~d~~~Fy~VR~~Aa~aLa~~~~ 720 (1124)
|..+| .+.+-.-|.+|+..|.. .- ... ..+..+|.+.+ .|. =-.||..|+.+|+.+++
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~--n~~v~~~A~~al~~la~ 90 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA--NIQAVALAAQSVELICD 90 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHH
Confidence 56666 56899999999988877 41 111 34677888888 675 46789999999999884
No 42
>2y3u_A Collagenase, collagenase G; hydrolase, gluzincin, metalloprotease; HET: P6G FLC; 2.55A {Clostridium histolyticum} PDB: 2y50_A* 2y6i_A*
Probab=51.54 E-value=6.1 Score=49.12 Aligned_cols=106 Identities=12% Similarity=0.121 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCC------CCccEEEeCCCccc--------ccccccceeeeeccc--cccCcccc
Q 001203 276 SKIHNTVEFFHNAFSHYETYLDAKFPF------GSYKQVFLAPEMAV--------SSSTFGAAMGIFSSQ--ILYDEKVI 339 (1124)
Q Consensus 276 ~~~~~tl~~~~~al~ffee~fG~~YPf------~ky~~VfVp~~~~~--------~~~~~gagLii~s~~--lL~~~~~i 339 (1124)
++++.++..+.+.-..|-..++...|. ..+.+++.+....+ ...+.| |+.+-+.. +-|.....
T Consensus 338 ~~~~~~~~a~k~~e~~Fh~vl~t~~p~~~~~~~~~L~Vvvf~s~~dY~~~~~lfg~~TdNG-G~YleG~~~f~aYe~~~~ 416 (785)
T 2y3u_A 338 EKIKRLYWASREVKSQFHRVVGNDKALEVGNADDVLTMKIFNSPEEYKFNTNINGVSTDNG-GLYIEPRGTFYTYERTPQ 416 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCSCSSSSCGGGSEEEEEESSHHHHTHHHHHHCCCCSSS-CEEEGGGTEEEEECCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCeEEEEEECCHHHHhhcccccCCcCCCc-eEEEeCCceEEEEeccCc
Confidence 455665555555556677777766664 25777766521111 011111 32221111 11211100
Q ss_pred chhhhhHHHHHHHHHHhhcCcccccCCCC---------chHHHHHHHHHHHH
Q 001203 340 DQAIDTSIKLSFALARQWFGVYITPELPN---------DEWLLDGLAGFLTD 382 (1124)
Q Consensus 340 d~~~~~~~~laHELAHQWFG~lVt~~~W~---------D~WLnEGfA~Yl~~ 382 (1124)
...+.....+.||++|.-=|-+..+..|. -.|+.||+|.||+.
T Consensus 417 ~si~nLee~f~HEytHyLdgRy~~~G~f~~~~~y~~~~~vW~~EG~AEY~s~ 468 (785)
T 2y3u_A 417 QSIFSLEELFRHEYTHYLQARYLVDGLWGQGPFYEKNRLTWFDEGTAEFFAG 468 (785)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHTSCSSTTSSGGGTTTCSHHHHHHHHHHHTT
T ss_pred cceEeecccccchhhhccccccccccccccCcccccCCCceehhhHHHHHhc
Confidence 11112234679999999866666666665 57999999999964
No 43
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=51.53 E-value=60 Score=33.41 Aligned_cols=74 Identities=24% Similarity=0.219 Sum_probs=50.9
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhCCCCcHh---------HHHHHHHHhcCCCchhhHHHHHHHHHHccccccccc------
Q 001203 661 INQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW------ 725 (1124)
Q Consensus 661 ~~QL~~drDV~aQ~eAi~~L~~~~~~s~~---------~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~------ 725 (1124)
.-++-++.+...|.+|+.+|......+.. ++..|.+.|.++ -..||..|+.+|+.++......
T Consensus 59 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 136 (252)
T 4db8_A 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVID 136 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCchHHHHHHH
Confidence 44555667888999999999876432221 456788888875 5799999999999987543221
Q ss_pred -ccHHHHHHHHH
Q 001203 726 -AGLLHLVKFYK 736 (1124)
Q Consensus 726 -~G~~~L~k~f~ 736 (1124)
.|++.|+++.+
T Consensus 137 ~~~i~~L~~lL~ 148 (252)
T 4db8_A 137 AGALPALVQLLS 148 (252)
T ss_dssp TTHHHHHHHGGG
T ss_pred CCCHHHHHHHHh
Confidence 34566665553
No 44
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=50.32 E-value=1e+02 Score=31.21 Aligned_cols=75 Identities=32% Similarity=0.254 Sum_probs=51.4
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhCCCCcHh---------HHHHHHHHhcCCCchhhHHHHHHHHHHccccccc-------
Q 001203 660 WINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 723 (1124)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~---------~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~------- 723 (1124)
..-++-.+.|...|..|+.+|......+.. ++..|.+.|.++ -..||..|+.+|+.++....
T Consensus 48 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~ 125 (252)
T 4hxt_A 48 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIV 125 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 334555677889999999999876443221 456788888775 48999999999999884221
Q ss_pred ccccHHHHHHHHH
Q 001203 724 DWAGLLHLVKFYK 736 (1124)
Q Consensus 724 ~~~G~~~L~k~f~ 736 (1124)
.-.+++.|+++.+
T Consensus 126 ~~~~i~~L~~~l~ 138 (252)
T 4hxt_A 126 DAGGVEVLVKLLT 138 (252)
T ss_dssp HTTHHHHHHHHTT
T ss_pred HCCCHHHHHHHHc
Confidence 1134666666554
No 45
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=48.03 E-value=5.4e+02 Score=32.80 Aligned_cols=191 Identities=14% Similarity=0.134 Sum_probs=106.6
Q ss_pred cHHHHHHHHHHHh--CCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHHhcCCCCCCCCC
Q 001203 670 VVAQAQAIAALEA--LPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLP 747 (1124)
Q Consensus 670 V~aQ~eAi~~L~~--~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~~~~~~~~~~ip 747 (1124)
-.-|.-|+.+|+- .-+.+..+.+.|..+|.|... -+|..||.+|+.+-.-..+-.-+..|+.+..+.
T Consensus 451 ~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~--~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--------- 519 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA--TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--------- 519 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCH--HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCH--HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---------
Confidence 4567778888885 234456688999999987654 578899999997622111112255666554431
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhh---c--hHHH--------------HHHHHHHHHHHc
Q 001203 748 RPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLK---S--ILFL--------------SSLLKRIDRLLQ 808 (1124)
Q Consensus 748 k~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~---~--~~~~--------------~~~~~ei~r~l~ 808 (1124)
.+ + -++++...+|+.+- ..-.+..+-|+++|+ + .++. ..+++++-+.+.
T Consensus 520 -~~------e-~vrR~aalgLGll~----~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 520 -QH------G-NITRGLAVGLALIN----YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp -SC------H-HHHHHHHHHHHHHT----TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred -Cc------H-HHHHHHHHHHHhhh----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 11 1 37788899999873 223355566666666 1 1111 123443433333
Q ss_pred ccccCCCCCchhhHHHHHHHHHHHHHhcCCCc-hhhhhhhcccccCcCChHHHHHHHHHHhhccccccCChhHHHHHHHH
Q 001203 809 FDRLMPSYNGILTISCIRTLTQIALKLSGFIS-LDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIK 887 (1124)
Q Consensus 809 ~D~~~pSy~~~vt~~~l~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vR~~A~~~l~~~~~~~~~~~~~l~~~~~ 887 (1124)
-|. ..-|-.++..+|..+. .|... ...++..+.. +++ ..||..|..||=.+.. ..|...+++ .|.
T Consensus 588 ~d~-----~d~VRraAViaLGlI~---~g~~e~v~rlv~~L~~---~~d-~~VR~gAalALGli~a-Gn~~~~aid-~L~ 653 (963)
T 4ady_A 588 SDS-----NDDVRRAAVIALGFVL---LRDYTTVPRIVQLLSK---SHN-AHVRCGTAFALGIACA-GKGLQSAID-VLD 653 (963)
T ss_dssp HCS-----CHHHHHHHHHHHHHHT---SSSCSSHHHHTTTGGG---CSC-HHHHHHHHHHHHHHTS-SSCCHHHHH-HHH
T ss_pred cCC-----cHHHHHHHHHHHHhhc---cCCHHHHHHHHHHHHh---cCC-HHHHHHHHHHHHHhcc-CCCcHHHHH-HHH
Confidence 332 1234455655555432 33322 2233333333 333 5899999988876653 344456777 555
Q ss_pred HhccCCcchh
Q 001203 888 SVEEEPSLRG 897 (1124)
Q Consensus 888 ~~~~~~~~~~ 897 (1124)
-+..|+....
T Consensus 654 ~L~~D~d~~V 663 (963)
T 4ady_A 654 PLTKDPVDFV 663 (963)
T ss_dssp HHHTCSSHHH
T ss_pred HHccCCCHHH
Confidence 5566666443
No 46
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=45.09 E-value=4.3e+02 Score=32.64 Aligned_cols=113 Identities=15% Similarity=0.124 Sum_probs=65.2
Q ss_pred hCCCcHHHHHHHHHHHhCCCCcHhHHHHHHHHhcC-CCchhhHHHHHHHHHHcccccccccccHHHH-HHHHHhcCCCCC
Q 001203 666 KDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSD-SKAFWRVRIEAAYALANTASEETDWAGLLHL-VKFYKSRRFDEN 743 (1124)
Q Consensus 666 ~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d-~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L-~k~f~~~~~~~~ 743 (1124)
.++|-..|.+|-+.|..... .......|...+.+ ...--.||..||..|-+.-.. .|..+..= ....|+. ..+.
T Consensus 23 ~s~d~~~r~~Ae~~L~~~~~-~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~--~w~~~~~~~~~~ik~~-ll~~ 98 (852)
T 4fdd_A 23 QSPDTTIQRTVQQKLEQLNQ-YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKA--HFQNFPNGVTDFIKSE-CLNN 98 (852)
T ss_dssp TCSCHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTT--SGGGCCHHHHHHHHHH-HHTT
T ss_pred hCcCHHHHHHHHHHHHHHHh-CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH--ccCCCCHHHHHHHHHH-HHHH
Confidence 57888899999999987653 34455677777764 345679999999999876542 35432111 1111110 0000
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHhhccCC-CChHHHHHHHHHHhh
Q 001203 744 IGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN-KSPREAVEFVLQLLK 791 (1124)
Q Consensus 744 ~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g-~~p~~v~~fLldll~ 791 (1124)
+-.+ .-.|++.+-.+++.|=..++ ..-++....|++.+.
T Consensus 99 --l~~~-------~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~ 138 (852)
T 4fdd_A 99 --IGDS-------SPLIRATVGILITTIASKGELQNWPDLLPKLCSLLD 138 (852)
T ss_dssp --TTCS-------SHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHS
T ss_pred --HcCC-------CHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHc
Confidence 1011 12477777777776643332 234566777777776
No 47
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=44.46 E-value=71 Score=41.41 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=53.6
Q ss_pred HHHHHHHHHccccc-CCCCCchhhHHHHHHHHHHHHHhcCCCchhhhhhhcccccCcCChHHHHHHHHHHhhccccccCC
Q 001203 799 LLKRIDRLLQFDRL-MPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNG 877 (1124)
Q Consensus 799 ~~~ei~r~l~~D~~-~pSy~~~vt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vR~~A~~~l~~~~~~~~~ 877 (1124)
.++.|.+|+.-.+. -.+...-|-++|+.+|++++- .-|..-..-++.-|.+......||++|+..|++- .+.
T Consensus 472 ~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~----~~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t---~P~ 544 (1056)
T 1lsh_A 472 SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK----RDPRKVQEIVLPIFLNVAIKSELRIRSCIVFFES---KPS 544 (1056)
T ss_dssp GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG----TCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT---CCC
T ss_pred HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh----hchHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH---CcC
Confidence 45566666542211 123334577788888887641 2221111122344556667789999999999872 232
Q ss_pred hhHHHHHHHHHhccCCcchh
Q 001203 878 IDSALSLFIKSVEEEPSLRG 897 (1124)
Q Consensus 878 ~~~~l~~~~~~~~~~~~~~~ 897 (1124)
. ..|+-+...+..||+.-.
T Consensus 545 ~-~~l~~ia~~l~~E~~~QV 563 (1056)
T 1lsh_A 545 V-ALVSMVAVRLRREPNLQV 563 (1056)
T ss_dssp H-HHHHHHHHHHTTCSCHHH
T ss_pred H-HHHHHHHHHHhhCchHHH
Confidence 2 567788888888887444
No 48
>1u4g_A Elastase, pseudolysin; , inhibition, peptidase family M4, hydrolase; HET: HPI; 1.40A {Pseudomonas aeruginosa} SCOP: d.92.1.2 PDB: 1ezm_A* 3dbk_A*
Probab=43.89 E-value=1e+02 Score=33.94 Aligned_cols=103 Identities=11% Similarity=0.110 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCCccEE-EeCC--Ccccccccccceeeeecc--ccccCccccchhhhhHHHHHH
Q 001203 277 KIHNTVEFFHNAFSHYETYLDAKFPFGSYKQV-FLAP--EMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIKLSF 351 (1124)
Q Consensus 277 ~~~~tl~~~~~al~ffee~fG~~YPf~ky~~V-fVp~--~~~~~~~~~gagLii~s~--~lL~~~~~id~~~~~~~~laH 351 (1124)
.+..+.-.+..+.+||.++|| .-|+.. .++ .|.. ...++- ..|..| +|.+ ...++ .....+++|
T Consensus 72 ~~~DAhy~a~~~~d~y~~~~g-r~~id~-~l~~~Vhyg~~y~NAf-WdG~~M-~fGDG~~~~~p-------~~~lDVv~H 140 (301)
T 1u4g_A 72 PLNDAHFFGGVVFKLYRDWFG-TSPLTH-KLYMKVHYGRSVENAY-WDGTAM-LFGDGATMFYP-------LVSLDVAAH 140 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-SCSSSS-CEEEEESCTTTCCCEE-ECSSCE-EECCCCSSBSC-------SCCHHHHHH
T ss_pred hhHHHHHhHHHHHHHHHHHcC-CCCCCC-ceEEEEecCCCccCcE-ecCcEE-EeeCCCccccc-------ccccceeee
Confidence 345666678899999999998 567763 333 2321 111111 112222 2322 11111 123458999
Q ss_pred HHHHhhcCcccccCCCCch-HHHHHHHHHHHHHHHHHHhC
Q 001203 352 ALARQWFGVYITPELPNDE-WLLDGLAGFLTDSFIKKFLG 390 (1124)
Q Consensus 352 ELAHQWFG~lVt~~~W~D~-WLnEGfA~Yl~~l~~~~~~G 390 (1124)
|++|--.-.........+. =|||||+..+...+-....|
T Consensus 141 E~tHGVt~~~agL~y~~eSGaLnEs~SDifG~~ve~~~~~ 180 (301)
T 1u4g_A 141 EVSHGFTEQNSGLIYRGQSGGMNEAFSDMAGEAAEFYMRG 180 (301)
T ss_dssp HHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccceeccccCccccCCccchhHHHHHHHHHHHHHHhcC
Confidence 9999877665444433333 39999999998765433333
No 49
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=43.27 E-value=5.4e+02 Score=31.44 Aligned_cols=59 Identities=12% Similarity=0.083 Sum_probs=39.1
Q ss_pred HHHhhCC--CcHHHHHHHHHHHhCC---------CCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccc
Q 001203 662 NQLEKDG--DVVAQAQAIAALEALP---------HLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1124)
Q Consensus 662 ~QL~~dr--DV~aQ~eAi~~L~~~~---------~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~ 720 (1124)
.++-.+. |...+..|++.|.... .....+...|.+.+.++..-+.||..|+.+|+.+..
T Consensus 134 ~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (876)
T 1qgr_A 134 VANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp HHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3344555 7777777777776431 112234566777887764468999999999998653
No 50
>1bqb_A Protein (aureolysin); hydrolase, metalloproteinase; 1.72A {Staphylococcus aureus} SCOP: d.92.1.2
Probab=39.70 E-value=1.2e+02 Score=33.37 Aligned_cols=98 Identities=5% Similarity=0.034 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCC--ccEE-EeC-C------Ccccccccccceeeeecc--ccccCccccchhhhh
Q 001203 278 IHNTVEFFHNAFSHYETYLDAKFPFGS--YKQV-FLA-P------EMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDT 345 (1124)
Q Consensus 278 ~~~tl~~~~~al~ffee~fG~~YPf~k--y~~V-fVp-~------~~~~~~~~~gagLii~s~--~lL~~~~~id~~~~~ 345 (1124)
+..+...+..+.+||.+.|| .=++.. ..++ .|. + ...++ + |-....+|.+ ...+. +....
T Consensus 67 avdA~~~~~~t~d~y~~~~g-r~sid~~G~~l~~~Vhyg~~~~~~~y~NA-f-Wdg~~m~fGdGdg~~f~-----~~~~~ 138 (301)
T 1bqb_A 67 GVDANYYAKQTYDYYKNTFG-RESYDNHGSPIVSLTHVNHYGGQDNRNNA-A-WIGDKMIYGDGDGRTFT-----NLSGA 138 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-CCSTTSSCCCEEEEECCCEETTEECTTCE-E-ECSSSEEECCCCSSSBS-----CGGGC
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCCCCCCCCeeEEEEEeCCCCCCCCccCc-E-EcCCEEEEEcCCCcccC-----Ccccc
Confidence 34566778899999999999 556652 3332 232 1 01111 1 1111222322 11111 11123
Q ss_pred HHHHHHHHHHhhcCcccccCCCCch-HHHHHHHHHHHHH
Q 001203 346 SIKLSFALARQWFGVYITPELPNDE-WLLDGLAGFLTDS 383 (1124)
Q Consensus 346 ~~~laHELAHQWFG~lVt~~~W~D~-WLnEGfA~Yl~~l 383 (1124)
..+++||++|--.-.......-.+. =|||||+.++...
T Consensus 139 lDVv~HE~tHGVt~~~agl~y~~eSGaLnEs~SDifg~~ 177 (301)
T 1bqb_A 139 NDVVAHEITHGVTQQTANLEYKDQSGALNESFSDVFGYF 177 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred cceeeeecccceecccCCCcccCCcCchhHHHHHHHhHh
Confidence 4589999999876554333332233 4899999999854
No 51
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=38.33 E-value=41 Score=30.97 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHhhcCcc
Q 001203 345 TSIKLSFALARQWFGVY 361 (1124)
Q Consensus 345 ~~~~laHELAHQWFG~l 361 (1124)
...++|||++|-=-++.
T Consensus 83 l~aVlaHElgH~~~~h~ 99 (107)
T 3cqb_A 83 AEAVLAHEVSHIANGDM 99 (107)
T ss_dssp HHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHCCCH
Confidence 45589999999755443
No 52
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=37.95 E-value=5.1e+02 Score=31.69 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=42.2
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhCCCC-cHhHHHHHHHHhcCCCchhhHHHHHHHHHHccc
Q 001203 661 INQLEKDGDVVAQAQAIAALEALPHL-SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (1124)
Q Consensus 661 ~~QL~~drDV~aQ~eAi~~L~~~~~~-s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~ 719 (1124)
..++ .++|-..|.+|-..|++.... ...+...|...+.++..--.||..||..|.+.-
T Consensus 7 L~~~-~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i 65 (876)
T 1qgr_A 7 LEKT-VSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSL 65 (876)
T ss_dssp HHGG-GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHh-cCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Confidence 3344 467888888898888765321 134667788888887667789999999999864
No 53
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=37.82 E-value=80 Score=41.28 Aligned_cols=199 Identities=14% Similarity=0.161 Sum_probs=100.6
Q ss_pred hCCCcHHHHHHHHHHHhCCC-Cc----HhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHHhcCC
Q 001203 666 KDGDVVAQAQAIAALEALPH-LS----FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRF 740 (1124)
Q Consensus 666 ~drDV~aQ~eAi~~L~~~~~-~s----~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~~~~~ 740 (1124)
.|++...|..|+..|+..-. .+ ..+...|.+.+.|+.. .||..|+.+|+.++...... .
T Consensus 58 ~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~--~vR~~a~~~L~~i~~~l~~~----~---------- 121 (1230)
T 1u6g_C 58 EDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKE--QLRDISSIGLKTVIGELPPA----S---------- 121 (1230)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSS--HHHHHHHHHHHHHHHHCC-----------------
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHhCCCc----c----------
Confidence 48999999999988875421 11 1345667777877654 78999999999887532110 0
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhc-cCCCChHHHHHHHHHHhhc-----hHHHHHHHHHHHHHHcccccCC
Q 001203 741 DENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRA-ADNKSPREAVEFVLQLLKS-----ILFLSSLLKRIDRLLQFDRLMP 814 (1124)
Q Consensus 741 ~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~-~~g~~p~~v~~fLldll~~-----~~~~~~~~~ei~r~l~~D~~~p 814 (1124)
. . +.+...+...-+|.-+..+.+ .+...-..+.+.|.+++.. ..++..++..+-..+.-+
T Consensus 122 ---~----~---~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~---- 187 (1230)
T 1u6g_C 122 ---S----G---SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP---- 187 (1230)
T ss_dssp ------------CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS----
T ss_pred ---c----c---cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCC----
Confidence 0 0 012333345555555555543 1111112333444444430 124455555555554321
Q ss_pred CCCchhhHHHHHHHHHHHHHhcCCCchhh-hhhhcccccCcCChHHHHHHHHHHhhcccccc-----CChhHHHHHHHHH
Q 001203 815 SYNGILTISCIRTLTQIALKLSGFISLDQ-VVKLIKPFRDFNTIWQVRVEASRALLDLEFHC-----NGIDSALSLFIKS 888 (1124)
Q Consensus 815 Sy~~~vt~~~l~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vR~~A~~~l~~~~~~~-----~~~~~~l~~~~~~ 888 (1124)
+..|..++++++..++....... ++. +-.++....... -..+|.+|+++|..+.... .-+...+..++..
T Consensus 188 --~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~ 263 (1230)
T 1u6g_C 188 --RLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKND-SMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKF 263 (1230)
T ss_dssp --SHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTC-SSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 22466677777776643211100 111 111111111111 1357888888887764321 1223567778777
Q ss_pred hc-cCCcchhh
Q 001203 889 VE-EEPSLRGQ 898 (1124)
Q Consensus 889 ~~-~~~~~~~~ 898 (1124)
+. .++..|..
T Consensus 264 l~d~~~~vR~~ 274 (1230)
T 1u6g_C 264 CNVDDDELREY 274 (1230)
T ss_dssp HSSCCTTTHHH
T ss_pred hcCCCHHHHHH
Confidence 74 34655543
No 54
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease, hydrolase, metalloprotease; 1.82A {Serratia proteamaculans}
Probab=35.79 E-value=1.6e+02 Score=32.99 Aligned_cols=106 Identities=9% Similarity=0.055 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCC--ccEE-EeCC--Ccccccccccceeeeecc--ccccCccccchhhhhHHHH
Q 001203 277 KIHNTVEFFHNAFSHYETYLDAKFPFGS--YKQV-FLAP--EMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIKL 349 (1124)
Q Consensus 277 ~~~~tl~~~~~al~ffee~fG~~YPf~k--y~~V-fVp~--~~~~~~~~~gagLii~s~--~lL~~~~~id~~~~~~~~l 349 (1124)
.+..+...+....+||.+.|| .=++.. ..++ .|-. ...++ +..|..| +|.+ ...+.+ ....-.++
T Consensus 89 av~~ay~~~~~t~d~y~~~~g-rnsid~~G~~l~~~VHyg~~y~NA-fWdG~~M-~fGDG~g~~f~~-----~~~~lDVv 160 (341)
T 2vqx_A 89 AVDEAYDYLGVTYDFFWQAFK-RNSLDNQGLPLTGSVHYGKEYQNA-FWNGQQM-VFGDGDGEIFNR-----FTIAIDVV 160 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCSTTSSCCCEEEEESCSSSCCCE-EECSSCE-EECCCCSSSBCC-----TTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCeeEEEEecCCCccCc-eecCcEe-EeeCCCCcccCC-----cccchhhh
Confidence 355566677889999999999 445542 3332 3321 11111 1112222 3322 111111 01123589
Q ss_pred HHHHHHhhcCcccccCCCCch-HHHHHHHHHHHHHHHHHHhC
Q 001203 350 SFALARQWFGVYITPELPNDE-WLLDGLAGFLTDSFIKKFLG 390 (1124)
Q Consensus 350 aHELAHQWFG~lVt~~~W~D~-WLnEGfA~Yl~~l~~~~~~G 390 (1124)
+||++|--....-....-.+. =|||||+.++...+-....+
T Consensus 161 ~HEltHGVt~~~agL~Y~~eSGaLNEs~SDifG~~ve~~~~~ 202 (341)
T 2vqx_A 161 GHALAHGVTESEAGLIYFQQAGALNESLSDVFGSLVKQFHLK 202 (341)
T ss_dssp HHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcccceecccCCccccCCCcchhhHHHHHHHHHHHHHhcC
Confidence 999999876544333332233 49999999998766444333
No 55
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=35.32 E-value=3.2e+02 Score=29.31 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHhcCCCchhhh---hhhcccccCcCChHHHHHHHHHHhhccccccC
Q 001203 821 TISCIRTLTQIALKLSGFISLDQV---VKLIKPFRDFNTIWQVRVEASRALLDLEFHCN 876 (1124)
Q Consensus 821 t~~~l~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~vR~~A~~~l~~~~~~~~ 876 (1124)
-..||..+..+- ...|.-|...+ ..+-.-+.+. =..||-+|+.|++.+..+.+
T Consensus 184 R~e~l~~l~~li-~~~G~~~~~~l~~~~~ia~ll~D~--d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 184 RSECLLVIEYYI-TNAGISPLKSLSVEKTVAPFVGDK--DVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHHHHHH-HHHCSGGGGGGCHHHHHGGGGGCS--SHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-HhcCCCccccccchHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhh
Confidence 357988888874 34565543322 1111222222 25899999999999876643
No 56
>3dnz_A Thermolysin; hydrolase, metalloproteinase, calcium, metal-binding, metalloprotease, protease, secreted, zinc, zymogen; HET: LYS; 1.20A {Bacillus thermoproteolyticus} PDB: 1kjo_A* 1kjp_A* 1kkk_A* 1kl6_A* 1kr6_A* 1kro_A* 1ks7_A* 1kto_A* 1y3g_E* 2whz_A* 2wi0_A* 1kei_A* 3do0_A* 3do1_A* 3do2_A* 3fb0_A 3fbo_A 3fgd_A* 3flf_A* 3fv4_A* ...
Probab=31.66 E-value=2.1e+02 Score=31.65 Aligned_cols=102 Identities=3% Similarity=0.001 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCCC--ccEE-EeC--CCcccccccccceeeeecc--ccccCccccchhhhhHHH
Q 001203 276 SKIHNTVEFFHNAFSHYETYLDAKFPFGS--YKQV-FLA--PEMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIK 348 (1124)
Q Consensus 276 ~~~~~tl~~~~~al~ffee~fG~~YPf~k--y~~V-fVp--~~~~~~~~~~gagLii~s~--~lL~~~~~id~~~~~~~~ 348 (1124)
..+..+...+....+||.+.|| .=++.. ..++ .|. ....++ + |-....+|.+ ...+.+ ....-.+
T Consensus 68 ~aavdA~~~~~~t~d~y~~~~g-r~sid~~G~~l~~~VHyg~~y~NA-f-W~g~~m~fGDGdg~~f~~-----~~~slDV 139 (316)
T 3dnz_A 68 APAVDAHYYAGVTYDYYKNVHN-RLSYDGNNAAIRSSVHYSQGYNNA-F-WNGSQMVYGDGDGQTFIP-----LSGGIDV 139 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-CCTTTSSCCCEEEEESCTTTCCCE-E-ECSSCEEECCCCSSSBSC-----GGGCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCceEEEEEecCCCccCc-e-EcCCEEEEeCCCCccccc-----ccccccc
Confidence 3446677788999999999999 557642 3333 232 111122 1 1112333422 111111 1113458
Q ss_pred HHHHHHHhhcCcccccCCCCc-hHHHHHHHHHHHHHHH
Q 001203 349 LSFALARQWFGVYITPELPND-EWLLDGLAGFLTDSFI 385 (1124)
Q Consensus 349 laHELAHQWFG~lVt~~~W~D-~WLnEGfA~Yl~~l~~ 385 (1124)
++||+.|--.-..-....-.+ -=|||+|+..+...+-
T Consensus 140 v~HE~tHgvt~~~agL~y~~esGaLNEs~SDifG~~ve 177 (316)
T 3dnz_A 140 VAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVE 177 (316)
T ss_dssp HHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeccccccccCCCcccCCccchhHHHHHHHHHHHH
Confidence 999999986544322222222 2499999999986553
No 57
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=31.51 E-value=7.8e+02 Score=29.86 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=33.4
Q ss_pred CcHHHHHHHHHHHhC----C-C------CcHhHHHHHHHHhcCCCchhhHHHHHHHHHHccc
Q 001203 669 DVVAQAQAIAALEAL----P-H------LSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (1124)
Q Consensus 669 DV~aQ~eAi~~L~~~----~-~------~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~ 719 (1124)
|...+..|+..|... . . ....+...|...+.|+..-..||..|+++|+.+.
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~ 209 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSL 209 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 777777777666432 1 1 1123455567777776446789999999998753
No 58
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=31.18 E-value=2.8e+02 Score=32.11 Aligned_cols=89 Identities=20% Similarity=0.205 Sum_probs=59.5
Q ss_pred HhhCCCcHHHHHHHHHHHhCCCCcH---------hHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccc-------ccc
Q 001203 664 LEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD-------WAG 727 (1124)
Q Consensus 664 L~~drDV~aQ~eAi~~L~~~~~~s~---------~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~-------~~G 727 (1124)
+-.+.|...|..|+.+|......+. .+...|...|.+. -+.||.+|+.+|+.++..... -.+
T Consensus 307 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~ 384 (530)
T 1wa5_B 307 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP--KENIKKEACWTISNITAGNTEQIQAVIDANL 384 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred HHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 3456677788888888886543321 2445677788775 489999999999998742111 235
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhh
Q 001203 728 LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVR 772 (1124)
Q Consensus 728 ~~~L~k~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr 772 (1124)
++.|+++.+.- ++-++++...||+.+=
T Consensus 385 l~~L~~lL~~~------------------~~~v~~~a~~aL~~l~ 411 (530)
T 1wa5_B 385 IPPLVKLLEVA------------------EYKTKKEACWAISNAS 411 (530)
T ss_dssp HHHHHHHHHHS------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC------------------CHHHHHHHHHHHHHHH
Confidence 67777777630 1347787778887774
No 59
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=31.14 E-value=1.3e+02 Score=33.91 Aligned_cols=200 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred hCCCcHHHHHHHHHHHhC--CCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccccccccccHHHHHHHHHhcCCCCC
Q 001203 666 KDGDVVAQAQAIAALEAL--PHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDEN 743 (1124)
Q Consensus 666 ~drDV~aQ~eAi~~L~~~--~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~~~G~~~L~k~f~~~~~~~~ 743 (1124)
++++-.-+--||++|... +.....+...+.++|.|++.| ||..|+.+..++-....+.. ...+..-++.-|+.+
T Consensus 114 ~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~py--VRk~A~l~~~kL~~~~pe~v--~~~~~~l~~ll~d~n 189 (355)
T 3tjz_B 114 TGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPS--VSSSALVSSLHLLKCSFDVV--KRWVNEAQEAASSDN 189 (355)
T ss_dssp HSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHH--HHHHHHHHHHHHTTTCHHHH--HTTHHHHHHHTTCSS
T ss_pred CCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHHhccCHHHH--HHHHHHHHHHhcCCC
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHhhccCC--------------CChHHHHHHHHHHhh-----c-hHHHHHHHHHH
Q 001203 744 IGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN--------------KSPREAVEFVLQLLK-----S-ILFLSSLLKRI 803 (1124)
Q Consensus 744 ~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g--------------~~p~~v~~fLldll~-----~-~~~~~~~~~ei 803 (1124)
++|+-+-..++..++..++ .+-+-+.=.|++++. + ...-..+++-|
T Consensus 190 --------------~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l 255 (355)
T 3tjz_B 190 --------------IMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFI 255 (355)
T ss_dssp --------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------
T ss_pred --------------ccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHH
Q ss_pred HHHHcccccCCCCCchhhHHHHHHHHHHHH-HhcCCCchhhhhhhcccccCcCChHHHHHHHHHHhhccccccCChhHHH
Q 001203 804 DRLLQFDRLMPSYNGILTISCIRTLTQIAL-KLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSAL 882 (1124)
Q Consensus 804 ~r~l~~D~~~pSy~~~vt~~~l~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vR~~A~~~l~~~~~~~~~~~~~l 882 (1124)
+-+|+ +-++.|-..|.++++.+.. ...-.-+.-.....|..=.+.. +|.+|++-|-.+....++.-...
T Consensus 256 ~~~L~------~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~n----iryvaLr~L~~l~~~~P~~v~~~ 325 (355)
T 3tjz_B 256 ESCLR------NKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAA----LRYAAVRTLNKVAMKHPSAVTAC 325 (355)
T ss_dssp -CCCC------CSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSS----SHHHHHHCC--------------
T ss_pred HHHHc------CCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCch----HHHHHHHHHHHHHHHCcHHHHHH
Q ss_pred HHHHHHhccCC
Q 001203 883 SLFIKSVEEEP 893 (1124)
Q Consensus 883 ~~~~~~~~~~~ 893 (1124)
..-+..+-+||
T Consensus 326 n~~ie~li~d~ 336 (355)
T 3tjz_B 326 NLDLENLVTDA 336 (355)
T ss_dssp -----------
T ss_pred HHHHHHHccCC
No 60
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=29.22 E-value=7.6e+02 Score=29.98 Aligned_cols=55 Identities=20% Similarity=0.119 Sum_probs=41.1
Q ss_pred hCCCcHHHHHHHHHHHhCCCC-cHhHHHHHHHHhcCCCchhhHHHHHHHHHHcccc
Q 001203 666 KDGDVVAQAQAIAALEALPHL-SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1124)
Q Consensus 666 ~drDV~aQ~eAi~~L~~~~~~-s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~ 720 (1124)
.++|-..|.+|-+.|.+.... ...+...|...+.++..--.||..||..|.+.-.
T Consensus 15 ~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~ 70 (861)
T 2bpt_A 15 LSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELV 70 (861)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTC
T ss_pred cCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcc
Confidence 457877888888888765321 1346678888888865678999999999998753
No 61
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=28.82 E-value=4e+02 Score=27.13 Aligned_cols=130 Identities=12% Similarity=0.089 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHHHhcCCC-ch-hhh-hhhcccccCcCChHHHHHHHHHHhhccccccCChhHHHHHHHHHhccCCcch
Q 001203 820 LTISCIRTLTQIALKLSGFI-SL-DQV-VKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLR 896 (1124)
Q Consensus 820 vt~~~l~~l~~l~~~~~~~~-~~-~~~-~~~~~~~~~~~~~~~vR~~A~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 896 (1124)
|-.++++++..|+..+...+ +. ..+ -.++..+.+ .-..||-+|.++|-.+... -+.+..+..++..+.. +.++
T Consensus 73 V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d--~~~~vr~~a~~aL~~~~~~-~~~~~ll~~l~~~l~~-~~~~ 148 (242)
T 2qk2_A 73 LVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKE--KKPNVVTALREAIDAIYAS-TSLEAQQESIVESLSN-KNPS 148 (242)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHTTC-SCHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcC-CChH
Confidence 33456666666664332211 10 111 122223332 2367999999999887543 3466777777777753 3444
Q ss_pred hhhhHHHHHhhhhhhccCCCCCCCCChHHHHHHHHHHhccccccchhhhhhHHHHHHHhhc
Q 001203 897 GQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAG 957 (1124)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~lr~~~~~~~~~l~~ 957 (1124)
.+......+.++.... + +.....+.+-.++..+.....-.+..+|..++..+..++.
T Consensus 149 vr~~~l~~l~~~l~~~-~---~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 149 VKSETALFIARALTRT-Q---PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHHHHHHHTTC-C---GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-C---CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 4432233332222111 0 1122233333333333221112468889888877655543
No 62
>4ger_A Gentlyase metalloprotease; metalloproteinase, tissue disaggregation, thermoly protease, hydrolase; HET: LYS; 1.59A {Paenibacillus polymyxa}
Probab=28.08 E-value=2.4e+02 Score=30.94 Aligned_cols=101 Identities=5% Similarity=0.004 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCC--ccEE-Ee--CCCcccccccccceeeeecc--ccccCccccchhhhhHHHH
Q 001203 277 KIHNTVEFFHNAFSHYETYLDAKFPFGS--YKQV-FL--APEMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIKL 349 (1124)
Q Consensus 277 ~~~~tl~~~~~al~ffee~fG~~YPf~k--y~~V-fV--p~~~~~~~~~~gagLii~s~--~lL~~~~~id~~~~~~~~l 349 (1124)
.+..+...+....+||.+.|| .=++.. ..++ .| .....++ +..| ...+|.+ ...+.+ ....-.++
T Consensus 62 aavdA~~~~~~t~d~y~~~~g-rnsid~~G~~l~~~VHyg~~y~NA-fW~g-~~m~fGDGdg~~f~~-----~~~slDVv 133 (304)
T 4ger_A 62 AGVDAHTYAAKTYDYYKAKFG-RNSIDGRGLQLRSTVHYGSRYNNA-FWNG-SQMTYGDGDGSTFIA-----FSGDPDVV 133 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCTTTSSCCCEEEEEEESSSCCCE-EECS-SCEEEECCCSSSBCC-----GGGSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCeEEEEEeCCCCccCc-eecC-CEEEEeCCCCccccc-----cccccchh
Confidence 345667788999999999998 556642 3332 12 2211222 1112 2233422 111111 11234589
Q ss_pred HHHHHHhhcCcccccCCCCc-hHHHHHHHHHHHHHHH
Q 001203 350 SFALARQWFGVYITPELPND-EWLLDGLAGFLTDSFI 385 (1124)
Q Consensus 350 aHELAHQWFG~lVt~~~W~D-~WLnEGfA~Yl~~l~~ 385 (1124)
+|||.|--.-..-....-.+ -=|||+|+..+...+-
T Consensus 134 aHEltHGVt~~ta~L~Y~~qsGaLNEs~SDifG~~ve 170 (304)
T 4ger_A 134 GHELTHGVTEYTSNLEYYGESGALNEAFSDVIGNDIQ 170 (304)
T ss_dssp HHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccCCccccCCccchhHHHHHHHHHHhc
Confidence 99999976543322211111 2389999999977653
No 63
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=28.07 E-value=7.1e+02 Score=30.62 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=49.9
Q ss_pred HHHHHHhhCCCc-HHHHHHHHHHHhCCCCcH------------hHHHHHHHHhcCCCchhhHHHHHHHHHHccccccc--
Q 001203 659 MWINQLEKDGDV-VAQAQAIAALEALPHLSF------------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-- 723 (1124)
Q Consensus 659 m~~~QL~~drDV-~aQ~eAi~~L~~~~~~s~------------~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~-- 723 (1124)
..+.-|..+.+. ..|..|+.+|........ .....|.+.|.++ .-+.||.+||.+|++++....
T Consensus 445 ~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~~~~~ 523 (780)
T 2z6g_A 445 ALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLALCPANH 523 (780)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT-CCHHHHHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCC-ChHHHHHHHHHHHHHHhcCHHHH
Confidence 445555554554 778889999887642111 1234577777665 357999999999999875321
Q ss_pred ----ccccHHHHHHHHHh
Q 001203 724 ----DWAGLLHLVKFYKS 737 (1124)
Q Consensus 724 ----~~~G~~~L~k~f~~ 737 (1124)
...+++.|++..+.
T Consensus 524 ~~i~~~g~i~~Lv~lL~~ 541 (780)
T 2z6g_A 524 APLREQGAIPRLVQLLVR 541 (780)
T ss_dssp HHHHHTTHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHh
Confidence 12346777777654
No 64
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=26.40 E-value=81 Score=31.36 Aligned_cols=60 Identities=25% Similarity=0.171 Sum_probs=44.3
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhCCCCcHh---------HHHHHHHHhcCCCchhhHHHHHHHHHHcccc
Q 001203 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1124)
Q Consensus 659 m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~---------~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~ 720 (1124)
..+-++-++.|...|..|+.+|......+.. .+..|.+.|.+. -..||..|+.+|+.++.
T Consensus 57 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~ 125 (210)
T 4db6_A 57 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS 125 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHc
Confidence 3445555677889999999999876432222 345688888776 37999999999999875
No 65
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=24.08 E-value=2.5e+02 Score=32.57 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=32.4
Q ss_pred CCCcHHHHHHHHHHHhCCCCcHh---------HHHHHHHHhcCCCchhhHHHHHHHHHHcccc
Q 001203 667 DGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1124)
Q Consensus 667 drDV~aQ~eAi~~L~~~~~~s~~---------~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~ 720 (1124)
+.+...|.+|..+|......+.. +...|.+.+.+. =+.||.+||.||+.++.
T Consensus 327 ~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 327 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTS 387 (510)
T ss_dssp CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHc
Confidence 44555677777777654322221 334566777664 36888889888887764
No 66
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=23.57 E-value=4e+02 Score=29.48 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=60.0
Q ss_pred HHhhCCCcHHHHHHHHHHHhCCCCcH---------hHHHHHHHHhcCCCchhhHHHHHHHHHHccccc--cc-----ccc
Q 001203 663 QLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASE--ET-----DWA 726 (1124)
Q Consensus 663 QL~~drDV~aQ~eAi~~L~~~~~~s~---------~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~--~~-----~~~ 726 (1124)
++-.+.|...|..|+.+|........ .+...|.+.|.++ -..||.+|+.+|+.++.. +. +-.
T Consensus 241 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ 318 (450)
T 2jdq_A 241 ELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP--KESIKKEACWTISNITAGNRAQIQTVIDAN 318 (450)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 44457788888888888886543321 2456678888775 589999999999998742 11 123
Q ss_pred cHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhh
Q 001203 727 GLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVR 772 (1124)
Q Consensus 727 G~~~L~k~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr 772 (1124)
+++.|++..+.- +.-++++...+++.+=
T Consensus 319 ~l~~L~~~l~~~------------------~~~v~~~a~~~L~~l~ 346 (450)
T 2jdq_A 319 IFPALISILQTA------------------EFRTRKEAAWAITNAT 346 (450)
T ss_dssp HHHHHHHHHHHS------------------CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcC------------------CHHHHHHHHHHHHHHH
Confidence 467777777631 1237777777777663
No 67
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=22.17 E-value=2.4e+02 Score=35.39 Aligned_cols=112 Identities=18% Similarity=0.208 Sum_probs=68.1
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhCCCCcHh---------HHHHHHHHhcCCCchhhHHHHHHHHHHcccccccc------
Q 001203 660 WINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD------ 724 (1124)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~---------~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~~~~------ 724 (1124)
.+..|..+.+...|.+|+.+|......+.. .+..|...|.+.. -.||..|+.+|+.++.....
T Consensus 585 Lv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~--~~Vq~~A~~~L~NLa~~~~~~~~~v~ 662 (810)
T 3now_A 585 LLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH--LYLTRAAAQCLCNLVMSEDVIKMFEG 662 (810)
T ss_dssp HHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC--TTHHHHHHHHHHHHTTSHHHHHHHHS
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHhCChHHHHHHHh
Confidence 455566677888888888888866544322 2344666676653 57999999999998753211
Q ss_pred -cccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCCCh------HHHHHHHHHHhh
Q 001203 725 -WAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP------REAVEFVLQLLK 791 (1124)
Q Consensus 725 -~~G~~~L~k~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p------~~v~~fLldll~ 791 (1124)
-.+++.|++...+ .| .-+|++-..|||.+-..+.... ......|+++|+
T Consensus 663 ~~g~l~~Lv~LL~s------------~d------~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~ 718 (810)
T 3now_A 663 NNDRVKFLALLCED------------ED------EETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA 718 (810)
T ss_dssp SSSHHHHHHHGGGC------------SS------HHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT
T ss_pred ccCcHHHHHHHhcC------------CC------HHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC
Confidence 1234555544321 12 2488888899988865211111 123446667776
No 68
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=21.89 E-value=53 Score=35.07 Aligned_cols=54 Identities=6% Similarity=-0.037 Sum_probs=28.5
Q ss_pred CccEEEeCCCcccccccccceeeeeccccccCccccchhhhhHHHHHHHHHHhhcCcc
Q 001203 304 SYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVY 361 (1124)
Q Consensus 304 ky~~VfVp~~~~~~~~~~gagLii~s~~lL~~~~~id~~~~~~~~laHELAHQWFG~l 361 (1124)
.+++.++++...++ +..+.|.+.+.+.+|-.-+ ...+...+||||++|-=-++.
T Consensus 63 ~~~v~v~~~~~~NA-fa~~gg~I~v~~gLl~~l~---~~~ELaaVLaHElgH~~~~H~ 116 (253)
T 3c37_A 63 DYVFKVVKDDSVNA-FAIPGGRVYVHTGLLKAAD---NETELAGVLAHEINHAVARHG 116 (253)
T ss_dssp CCEEEEECCCSCCE-EEETTTEEEEEHHHHHHCS---SHHHHHHHHHHHHHHHHTTHH
T ss_pred CeEEEEEeCCCCCe-eEcCCCeEEeeHHHHhhCC---CHHHHHHHHHHHHHHHHCcCH
Confidence 45666676433333 2233345555555542110 112345689999999865554
No 69
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=21.10 E-value=1e+03 Score=27.76 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=35.0
Q ss_pred HHHHhCCCCcHhHHHHHHHHhcCCCchhhHHHHHHHHHHccccc
Q 001203 678 AALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASE 721 (1124)
Q Consensus 678 ~~L~~~~~~s~~~~~~L~~~l~d~~~Fy~VR~~Aa~aLa~~~~~ 721 (1124)
++++.+|+.+..+.+++.+..+|+. =.||.+|.+.|..+...
T Consensus 54 kffk~FP~l~~~Ai~a~lDLcEDed--~~IR~qaik~Lp~~ck~ 95 (507)
T 3u0r_A 54 KFFKHFPELADSAINAQLDLCEDED--VSIRRQAIKELPQFATG 95 (507)
T ss_dssp HHGGGCGGGHHHHHHHHHHHHTCSS--HHHHHHHHHHGGGGCCT
T ss_pred HHHhhChhhHHHHHHHHHHHHhccc--HHHHHHHHHhhHHHhhh
Confidence 5677888888888899999998875 45999999999988764
Done!