BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001204
(1124 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5XJD3|FIP1_DANRE Pre-mRNA 3'-end-processing factor FIP1 OS=Danio rerio GN=fip1l1
PE=1 SV=1
Length = 570
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 320 GFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWK 379
G G GV++ G +P + E D++ FEEKPW+ PG D++D+FN+G NE++WK
Sbjct: 140 GAGAKVKGVDLEAPGSINGVP----VLEADMESFEEKPWRKPGADLSDYFNYGFNEDTWK 195
Query: 380 DYCKQLEQHRL 390
YC++ ++ R+
Sbjct: 196 AYCEKQKRLRM 206
>sp|Q9D824|FIP1_MOUSE Pre-mRNA 3'-end-processing factor FIP1 OS=Mus musculus GN=Fip1l1
PE=1 SV=1
Length = 581
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 10/85 (11%)
Query: 322 GMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDY 381
G GV++ G +P + EVD+D FE+KPW+ PG D++D+FN+G NE++WK Y
Sbjct: 132 GTKVKGVDLDAPGSINGVP----LLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 187
Query: 382 CKQLEQHRL------ETTMQSKIRV 400
C++ ++ R+ T+ +KI V
Sbjct: 188 CEKQKRIRMGLEVIPVTSTTNKITV 212
>sp|Q5U317|FIP1_RAT Pre-mRNA 3'-end-processing factor FIP1 OS=Rattus norvegicus
GN=Fip1l1 PE=1 SV=1
Length = 536
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 10/85 (11%)
Query: 322 GMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDY 381
G GV++ G +P + EVD+D FE+KPW+ PG D++D+FN+G NE++WK Y
Sbjct: 132 GTKVKGVDLDAPGSINGVP----LLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 187
Query: 382 CKQLEQHRL------ETTMQSKIRV 400
C++ ++ R+ T+ +KI V
Sbjct: 188 CEKQKRIRMGLEVIPVTSTTNKITV 212
>sp|Q5RAA7|FIP1_PONAB Pre-mRNA 3'-end-processing factor FIP1 OS=Pongo abelii GN=FIP1L1
PE=2 SV=1
Length = 588
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 10/99 (10%)
Query: 322 GMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDY 381
G GV++ G +P + EVD+D FE+KPW+ PG D++D+FN+G NE++WK Y
Sbjct: 118 GTKVKGVDLDAPGSINGVP----LLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 173
Query: 382 CKQLEQHRL------ETTMQSKIRVYESGRDQPTGRAIQ 414
C++ ++ R+ T+ +KI + + G IQ
Sbjct: 174 CEKQKRIRMGLEVIPVTSTTNKITAEDCTMEVTPGAEIQ 212
>sp|Q6UN15|FIP1_HUMAN Pre-mRNA 3'-end-processing factor FIP1 OS=Homo sapiens GN=FIP1L1
PE=1 SV=1
Length = 594
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 10/99 (10%)
Query: 322 GMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDY 381
G GV++ G +P + EVD+D FE+KPW+ PG D++D+FN+G NE++WK Y
Sbjct: 133 GTKVKGVDLDAPGSINGVP----LLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 188
Query: 382 CKQLEQHRL------ETTMQSKIRVYESGRDQPTGRAIQ 414
C++ ++ R+ T+ +KI + + G IQ
Sbjct: 189 CEKQKRIRMGLEVIPVTSTTNKITAEDCTMEVTPGAEIQ 227
>sp|Q09801|FIP1X_SCHPO Pre-mRNA polyadenylation factor fip1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC22G7.10 PE=3 SV=1
Length = 344
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 343 KTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHR 389
K IFE+D++ F++KPW+ PG DI+D+FN+G +E +W YC + R
Sbjct: 116 KNIFEIDLESFDDKPWRKPGADISDYFNYGFDEFTWAAYCAKQTTLR 162
>sp|Q6BGR9|FIP1_DEBHA Pre-mRNA polyadenylation factor FIP1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=FIP1 PE=3 SV=2
Length = 328
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 343 KTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYE 402
K + +VD++ ++KPW++PG DI+D+FN+G +E +W YC + ++ R E Q +
Sbjct: 145 KPLTQVDLEKLKDKPWRFPGADISDYFNYGFDEFTWTAYCCKQDKLRGEFNPQKLMAQLM 204
Query: 403 SGRDQP 408
SG P
Sbjct: 205 SGGAGP 210
>sp|Q6C784|FIP1_YARLI Pre-mRNA polyadenylation factor FIP1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=FIP1 PE=3 SV=1
Length = 221
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 343 KTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQS 396
K I E +++ FE+KPW+ PG DITD+FN+G +E +W YC + Q R E Q+
Sbjct: 125 KPITEHNLEDFEDKPWRMPGADITDYFNYGFDEFTWMAYCDKQNQIRGEYNPQN 178
>sp|Q6FJ55|FIP1_CANGA Pre-mRNA polyadenylation factor FIP1 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=FIP1 PE=3 SV=1
Length = 327
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 9/94 (9%)
Query: 322 GMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDY 381
G SA G+++ GL P + +D + +EKPW+ PG +I+D+FN+G NE +W +Y
Sbjct: 161 GTSAEGIDLDKEGLYNDEP----VSTIDPEVLKEKPWRQPGANISDYFNYGFNEYTWMEY 216
Query: 382 CKQLEQHRLET----TMQSKIRVYESGR-DQPTG 410
+ E+ R E + + + + GR DQP G
Sbjct: 217 LHRQEKLRQEYNPRRILMGLMTLQQQGRLDQPQG 250
>sp|Q6CPC3|FIP1_KLULA Pre-mRNA polyadenylation factor FIP1 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=FIP1 PE=3 SV=1
Length = 295
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 14/154 (9%)
Query: 272 GSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNM- 330
G+ T+ G Q+ + + P AG+ P+Q+G P +
Sbjct: 83 GNDTSKIDSGKSQISAITDTTPLGTADHAIAAVAGISDVVPVQEGSIPPEQQQQQQQTID 142
Query: 331 AGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRL 390
+F K I ++D + +EKPW+ PG +I+D+FN+G NE++W +Y + E
Sbjct: 143 LNPDAQF---DGKPIVQIDPEILKEKPWRQPGANISDYFNYGFNEQTWMEYLHRQEHLTK 199
Query: 391 E----------TTMQSKIRVYESGRDQPTGRAIQ 414
E +Q + ++ + G QP IQ
Sbjct: 200 EYNPQKILMNLLALQQQGKLNDPGSGQPVQNTIQ 233
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,474,628
Number of Sequences: 539616
Number of extensions: 24694145
Number of successful extensions: 128431
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 2272
Number of HSP's that attempted gapping in prelim test: 93498
Number of HSP's gapped (non-prelim): 23918
length of query: 1124
length of database: 191,569,459
effective HSP length: 128
effective length of query: 996
effective length of database: 122,498,611
effective search space: 122008616556
effective search space used: 122008616556
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 67 (30.4 bits)