Query 001204
Match_columns 1124
No_of_seqs 120 out of 160
Neff 2.2
Searched_HMMs 46136
Date Thu Mar 28 18:38:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1049 Polyadenylation factor 100.0 4.4E-45 9.6E-50 403.2 25.2 500 136-800 24-536 (538)
2 PF05182 Fip1: Fip1 motif; In 99.9 1.7E-24 3.7E-29 176.4 3.8 45 346-390 1-45 (45)
3 COG5213 FIP1 Polyadenylation f 99.8 6.7E-22 1.4E-26 203.2 3.4 55 342-396 115-169 (266)
4 KOG0921 Dosage compensation co 85.6 3.6 7.8E-05 51.7 9.5 108 186-327 1159-1266(1282)
5 KOG1049 Polyadenylation factor 34.8 21 0.00046 42.8 1.7 53 730-782 420-478 (538)
6 KOG1924 RhoA GTPase effector D 25.0 3.6E+02 0.0078 34.8 9.5 36 343-379 617-654 (1102)
7 PF11709 Mit_ribos_Mrp51: Mito 24.1 2.9E+02 0.0064 31.0 8.0 85 293-392 48-162 (312)
8 PF07067 DUF1340: Protein of u 18.3 55 0.0012 35.5 1.0 28 365-392 103-130 (236)
9 PHA02669 hypothetical protein; 13.1 2.1E+02 0.0044 30.9 3.5 42 142-200 73-114 (210)
10 PF04094 DUF390: Protein of un 11.2 1.6E+03 0.034 29.2 10.3 29 142-170 6-37 (828)
No 1
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=100.00 E-value=4.4e-45 Score=403.17 Aligned_cols=500 Identities=21% Similarity=0.248 Sum_probs=339.3
Q ss_pred ccCCcccCcccCCCccCceEEeccCCCCCccccCCCCCCCCCCCCCceEEEecCCCCCccCcchhhcccCCCCCcccCCC
Q 001204 136 EAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGE 215 (1124)
Q Consensus 136 ~~~~~~~ddwdSDSeDdlqiVlNd~~~~p~~~~r~~gdddddeD~d~lvivadg~~~~~~~~~~Eeq~Wg~~~a~~~~G~ 215 (1124)
.+.++.++.|+.|.|+.+++|++...-+.|+..- |-+|.+|++.++||++.+.+ ..+++++|.... ..-|.
T Consensus 24 ~~e~~~~~~e~~d~ee~~~~~~p~e~~~~~~~~~---~~~d~dDd~~~~~~~e~d~~----~~d~~s~~~~d~--~~~~~ 94 (538)
T KOG1049|consen 24 EDEAETGASEDPDIEERVKSVSPGESKKFDVVAD---DSDDCDDDDEEMESLEPDPE----SLDSDSDDDEDS--SLKDE 94 (538)
T ss_pred ccccccccccCccHHHhhcccCCccccccccccc---ccccCCchhhhhccCCCCcc----cccccccchhcc--ccCCc
Confidence 4566778899999999999999999876554211 12555667778888877766 788999998830 00111
Q ss_pred CCcccccCcccccCcchhhhhhhcccccccccCCCCcCCCCCCcccccCCCCCCCCCCcccCCCCCCCccCCCccCCCCC
Q 001204 216 GGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAA 295 (1124)
Q Consensus 216 ~gaerk~ggge~~~~~~~~~~~a~~~~kiGys~~g~~~hp~HsqfKYVRPgaa~~pga~~~~~~g~pgqvrpp~~~~~~a 295 (1124)
.+ .++ ...++ ||+.++.+..+++...+...+.+|+
T Consensus 95 ~~--------~~~------~~~~~---------------------k~~~~~~a~~~~~~~~v~i~t~~~~---------- 129 (538)
T KOG1049|consen 95 DD--------VAV------DESAV---------------------KTSDDQEASEGSSDQNVTIRTVKAT---------- 129 (538)
T ss_pred cc--------ccc------ccccc---------------------cccCccccccCCCcceeeecccccc----------
Confidence 11 110 00000 8999999999998888877777766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCccccccCCCCCcceeecCCCcCCCCCCCCCCCCcccccCCCCH
Q 001204 296 GRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNE 375 (1124)
Q Consensus 296 GrgrGdWrp~g~k~~~~~~k~fh~G~g~~~~G~~~agrG~eF~lp~~k~IfdvDiD~~eeKPWRkPGADISDYFNYGFnE 375 (1124)
.++..+|+++. +|.-.+.|.. ...+||+||||.|++||||+|||||||||||||||
T Consensus 130 -------------~~~a~~kg~~~-----~~dld~~g~i------n~v~I~evDldsfEdKPWRkPGADiSDYFNYGFNE 185 (538)
T KOG1049|consen 130 -------------NKSAAPKGKMS-----QVDLDTPGTI------NGVPIFEVDLDSFEDKPWRKPGADISDYFNYGFNE 185 (538)
T ss_pred -------------ccccccccCcc-----cccccCCccc------CCccceeecHHHhccCcccCCCccchhhhccccCH
Confidence 11223555553 4443333333 22389999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhchhhhhhhhccCC---CCCCCceeeecCCCCCCCCCCCCCCCCcCCCC-CceEEeeccCccCC
Q 001204 376 ESWKDYCKQLEQHRLETTMQSKIRVYESGR---DQPTGRAIQVEGGSGERLPSIDTRPPRIRDSD-AIIEIVCQDSVDDD 451 (1124)
Q Consensus 376 ~TWk~Yc~kq~qlR~E~tmqsKI~~yEsg~---~lptGRaIQVEgg~geR~PS~D~RpPR~rDSD-~IIeIv~qdS~Dd~ 451 (1124)
+||++||++|++||.+|++...+.+++..+ .+++.-.||..+ -.|.+ .... +-..++|.++..-
T Consensus 186 eTWk~YC~rQkrlrie~~~~~~~~~~e~~r~~~~~~~~l~~q~~g----~~p~~-------~~ts~~~~~~~~~~~~~~- 253 (538)
T KOG1049|consen 186 ETWKAYCERQKRLRIEFAGGGLERTTEPLRRQRDLFGELKIQIPG----PGPVG-------NLTSRTSVGARGIDSNQR- 253 (538)
T ss_pred HHHHHHHHHHhhhhhhhcccccccccccccccccCcchhhhccCC----CCCcc-------ccCCccccccccCCCCCC-
Confidence 999999999999999999988888877654 344444444332 11111 1110 0111222211110
Q ss_pred CCCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccccccccccchhhhhccccccccccccCCCCCCCCC-------CC
Q 001204 452 SSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGL-------LP 524 (1124)
Q Consensus 452 ~s~~n~~q~n~~~r~d~r~~~~~~e~~M~~~~~ey~~gfpq~y~~r~~~~~g~~~p~mns~~~n~pegd~~-------lp 524 (1124)
. .+. +.+.+...-...+.+. ...-|+.|+-..++--|.+. .|
T Consensus 254 -----~--~~~-------------------~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~r~g~~~~~~~~~~~p 302 (538)
T KOG1049|consen 254 -----P--AND-------------------VPPSGGGRPLMSVTGS-----RPAEPSSNSQAPGARSGSGEPSGMSEPPP 302 (538)
T ss_pred -----C--CCC-------------------CCCCCCCcccccccCC-----cCcCCCCCccCccccCCCCCCCCCCCCCC
Confidence 0 000 0000100000000000 11223333322233333322 23
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCchhhccCCCCCCCCCCCCCCCCCchhhcccccchhhhhhhccCCCCCC-CCCc
Q 001204 525 FPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPL-SSPV 603 (1124)
Q Consensus 525 ~~~~~p~~~~~gsrg~~p~~~g~~~gtp~e~r~~~gr~~~~Sp~~tP~Qs~~~krf~Dsq~EEs~ESmdgk~s~~-sSPv 603 (1124)
+-...|.++.-..-|..++ |-.++- .+..+.++++|.|+...+--|..+.|+...|.++..|.. ..|.
T Consensus 303 ~~~a~p~~~~~~~~~~~~s-p~~~~t----------~Pg~~~ap~~p~~~~~~p~s~g~~~e~~~~s~~~~~s~~~~p~g 371 (538)
T KOG1049|consen 303 SMEAGPSQKERLPPGPEES-PPSNET----------APGASEAPSSPGDSGPPPSSLGPNEESDDYSTESGKSARTDPPG 371 (538)
T ss_pred CcCCCCChhhccCCCcCCC-CCcCCC----------CCCcccCCCCCCCCCCCccccCcCCCCCCcccccccccccCCCc
Confidence 3333444444444443333 112222 245577888999988889999999999999999988887 7888
Q ss_pred cccccccccccccccccccccccCCCccccccccccccccccccCCCcccCcccccccccccCcccccCChhHHHHHhhc
Q 001204 604 IVRDARELSVEHKDAVHDELVLGDGSSAVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARS 683 (1124)
Q Consensus 604 ~v~dare~S~E~kD~~d~e~~~adgss~~~~dE~n~~T~~D~~kd~~l~hs~kkqK~~S~veQp~~qe~d~~~dska~rs 683 (1124)
.|+.+.. ++--.+.....+ .++. + .-..++.+...+...+. ++..-++.+|.
T Consensus 372 ~~~~pp~-~~h~~~~~~~s~--~~~~-------~-----------------~~~~~m~~~~~~~~~~~-r~~~rs~~~r~ 423 (538)
T KOG1049|consen 372 EVRPPPQ-SAHLAAPEGPSP--KRGE-------S-----------------SPDMYMRHRSPHSRSRD-RDNGRSGYRRR 423 (538)
T ss_pred ccCCCcc-ccccccCCCCCC--Cccc-------c-----------------CccccccCCCccccccc-ccccccchhhh
Confidence 8888766 555544311122 1111 1 13356777777888888 77888899999
Q ss_pred ccccccccCCcccchhhccCcccccccccccccCCcCCCCCccchhhhhhhhhhhHHHHhhhhhhc-ccCCCCCCCCCCC
Q 001204 684 SENSKARSGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAI-GREGSHPRRDFDP 762 (1124)
Q Consensus 684 SenSkaRSgSskD~qk~~e~eEeV~qd~~S~r~g~~rrh~de~e~~~rrkdrd~r~emER~r~~~~-gRe~syp~rd~dp 762 (1124)
|+.+++++++.||.|. +|-|++++.|.+.-++++|+..+....+||.+|.-.||||.|..+. +++..-+||-||-
T Consensus 424 ~~~~s~~~~~~rd~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~rk~~d~~REr~~rr~~~~~~~d~~~~~r~~~~ 499 (538)
T KOG1049|consen 424 SRSRSPTRDPGRDKKP----GELVGLGRDSSKRWRNGPPRTLERDETSRKKVDRDREREHRRKESSVDKDRHREHRRWDE 499 (538)
T ss_pred hhcccCCCCcccCCCC----CcccccccccChhhhccCCCccccccccccccchhhHHHHHHhhhccchhhcchhhhhhh
Confidence 9999999999999999 9999999999999999999999999999999999999999999998 8899999999999
Q ss_pred CCcccccCCCCCccccccccCCcccccccccCcccccc
Q 001204 763 SLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKN 800 (1124)
Q Consensus 763 ~~~~~~~~~~e~~Dr~keren~d~~Wqrredd~~~rr~ 800 (1124)
+.... ..+++.|++.|+++.....|..+....++++.
T Consensus 500 ~~e~s-~~r~~~~~kskr~~~~~~~~s~~~~~~e~~~~ 536 (538)
T KOG1049|consen 500 NEESS-SGRREDHSKSKRSGTHLEEYSSRSSFDESQRN 536 (538)
T ss_pred ccccc-cccchhcchhhhccccchhhccCCCccccccc
Confidence 87766 67889999999999999999999999998875
No 2
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=99.90 E-value=1.7e-24 Score=176.41 Aligned_cols=45 Identities=62% Similarity=1.359 Sum_probs=43.6
Q ss_pred eeecCCCcCCCCCCCCCCCCcccccCCCCHHHHHHHHHHHHHhhh
Q 001204 346 FEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRL 390 (1124)
Q Consensus 346 fdvDiD~~eeKPWRkPGADISDYFNYGFnE~TWk~Yc~kq~qlR~ 390 (1124)
|+||||.+++||||+|||||||||||||||+||++||++|+++|+
T Consensus 1 fd~d~d~~~~KPWr~pGaDisDyFNYGf~E~tW~~Y~~kq~~~R~ 45 (45)
T PF05182_consen 1 FDVDIDSFEEKPWRKPGADISDYFNYGFNEETWREYCKKQRQLRK 45 (45)
T ss_pred CCcChhhhccCCccCCCCChhhhcCCCCCHHHHHHHHHHHHHhhC
Confidence 789999999999999999999999999999999999999999984
No 3
>COG5213 FIP1 Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=99.84 E-value=6.7e-22 Score=203.15 Aligned_cols=55 Identities=40% Similarity=1.003 Sum_probs=51.8
Q ss_pred CCcceeecCCCcCCCCCCCCCCCCcccccCCCCHHHHHHHHHHHHHhhhhhchhh
Q 001204 342 HKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQS 396 (1124)
Q Consensus 342 ~k~IfdvDiD~~eeKPWRkPGADISDYFNYGFnE~TWk~Yc~kq~qlR~E~tmqs 396 (1124)
++.||+|||+.|.+||||+|||||||||||||||+||++||.+|++||..|+.+.
T Consensus 115 g~nI~~iD~Esf~dKPWrkPGAdiSDYFNYGFnEfTW~eYc~~Q~~l~~d~~p~~ 169 (266)
T COG5213 115 GQNILDIDIESFKDKPWRKPGADISDYFNYGFNEFTWKEYCHMQEKLQQDYNPRE 169 (266)
T ss_pred CcceeeechhhhccCcccCCCcchhhhhhccchhhHHHHHHHHHHHhhhccCHHH
Confidence 4589999999999999999999999999999999999999999999999988754
No 4
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=85.61 E-value=3.6 Score=51.71 Aligned_cols=108 Identities=24% Similarity=0.258 Sum_probs=52.6
Q ss_pred EecCCCCCccCcchhhcccCCCCCcccCCCCCcccccCcccccCcchhhhhhhcccccccccCCCCcCCCCCCcccccCC
Q 001204 186 VADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRP 265 (1124)
Q Consensus 186 vadg~~~~~~~~~~Eeq~Wg~~~a~~~~G~~gaerk~ggge~~~~~~~~~~~a~~~~kiGys~~g~~~hp~HsqfKYVRP 265 (1124)
+-||+.+ +-|+--|||--. -.+++--|.-+-.|||-. =|||+.||+.|++---=-|.|+
T Consensus 1159 ygDGp~P----PKmaryDnG~~~-n~SgyRRGgssysgGGYG----------------ggys~gGygsGGYGgsa~~~~~ 1217 (1282)
T KOG0921|consen 1159 YGDGPGP----PKMARYDNGPSN-NNSGYRRGGSSYSGGGYG----------------GGYSGGGYGSGGYGGSAPSARA 1217 (1282)
T ss_pred ccCCCCC----cccccccCCCcc-CccccccCCCCCCCCCcC----------------CCCCCCCcCCCCCCCCCCCCCC
Confidence 4578888 679999999411 112222221222222111 1577777766654322222222
Q ss_pred CCCCCCCCcccCCCCCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 001204 266 GAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASG 327 (1124)
Q Consensus 266 gaa~~pga~~~~~~g~pgqvrpp~~~~~~aGrgrGdWrp~g~k~~~~~~k~fh~G~g~~~~G 327 (1124)
++ -+++++|--| .+.+-|-|-|.||.+..++-. ..-.||.-|+|-.++|
T Consensus 1218 ~~------Gagvg~GyrG-----vsrgGfrnnggGdyrnpgggy--rgsGGfgrgggrgagg 1266 (1282)
T KOG0921|consen 1218 NY------GAGVGNGYRG-----VSRGGFRNNGGGDYRNPGGGY--RGSGGFGRGGGRGAGG 1266 (1282)
T ss_pred Cc------cccccCCCcc-----ccCCccccCCCCCCCCCCCCc--cCCCCcCCCCCCCCCC
Confidence 22 2333344444 335566677888886443222 2235566665544444
No 5
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=34.82 E-value=21 Score=42.76 Aligned_cols=53 Identities=28% Similarity=0.489 Sum_probs=35.5
Q ss_pred hhhhhhhhhHHHHhhh------hhhcccCCCCCCCCCCCCCcccccCCCCCcccccccc
Q 001204 730 FRRKDREGRQEMERNR------MVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERE 782 (1124)
Q Consensus 730 ~rrkdrd~r~emER~r------~~~~gRe~syp~rd~dp~~~~~~~~~~e~~Dr~kere 782 (1124)
.+|+.|+...+|++.| +|..|++-+|+.+..-+....-.+.....+|+.+||+
T Consensus 420 ~~r~~~~~s~~~~~~rd~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~rk~~d~~REr~ 478 (538)
T KOG1049|consen 420 YRRRSRSRSPTRDPGRDKKPGELVGLGRDSSKRWRNGPPRTLERDETSRKKVDRDRERE 478 (538)
T ss_pred hhhhhhcccCCCCcccCCCCCcccccccccChhhhccCCCccccccccccccchhhHHH
Confidence 3445566666665554 5677888888877766555544477777888877776
No 6
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=25.03 E-value=3.6e+02 Score=34.78 Aligned_cols=36 Identities=17% Similarity=0.427 Sum_probs=21.6
Q ss_pred CcceeecCCCcCCCCCCCC-CCCCcc-cccCCCCHHHHH
Q 001204 343 KTIFEVDIDGFEEKPWKYP-GVDITD-FFNFGLNEESWK 379 (1124)
Q Consensus 343 k~IfdvDiD~~eeKPWRkP-GADISD-YFNYGFnE~TWk 379 (1124)
|-+|.+++- +.--+|.+= -+|||+ -|=-+-+|+.+.
T Consensus 617 KK~~k~e~~-Mrr~nW~kI~p~d~s~~cFWvkv~Edk~e 654 (1102)
T KOG1924|consen 617 KKVYKPEVP-MRRFNWSKIVPRDLSENCFWVKVNEDKLE 654 (1102)
T ss_pred cccCCCCCc-cccCCccccCccccCccceeeecchhhcc
Confidence 345665543 566788763 345653 576777777653
No 7
>PF11709 Mit_ribos_Mrp51: Mitochondrial ribosomal protein subunit ; InterPro: IPR016712 The function of mitochondrial ribosomal small-subunit protein MRP51 is not entirely clear, but deletion of the MRP51 gene completely blocks mitochondrial gene expression [].
Probab=24.12 E-value=2.9e+02 Score=31.04 Aligned_cols=85 Identities=25% Similarity=0.458 Sum_probs=51.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCcCcccCCcc----------c--cccCCCCCcceeecCCC
Q 001204 293 PAAGRGRGDWRPAGMKTAPPMQ--------KGFHPGFGMSASGVNMAGRG----------L--EFTLPSHKTIFEVDIDG 352 (1124)
Q Consensus 293 ~~aGrgrGdWrp~g~k~~~~~~--------k~fh~G~g~~~~G~~~agrG----------~--eF~lp~~k~IfdvDiD~ 352 (1124)
+.+.+.|||| |.|...|-. +.+.+-..|+.|-+. ++-. + ......+.++|+-+.+.
T Consensus 48 p~ss~~RgdW---GLKr~LP~k~~~~~I~vn~lDt~e~~tdfesa-~~~~~~~~rfqElgl~~~~~~~~~~plF~~~~~~ 123 (312)
T PF11709_consen 48 PPSSLARGDW---GLKRPLPSKSTSPYIRVNDLDTIERMTDFESA-SDHVWTRKRFQELGLPPSVPPGRQNPLFESESDN 123 (312)
T ss_pred Chhhhhcccc---ccCCcCCccCCCceEEEeccccccccCcceeC-CchHHHHHHHHhcCCCccCCccccCCcccccccc
Confidence 3445789999 888855422 234444456666541 1111 1 11112344666655553
Q ss_pred c----------CCCCCCCCCCCCcccccCCCCHHHHHHHHHHHHHhhhhh
Q 001204 353 F----------EEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLET 392 (1124)
Q Consensus 353 ~----------eeKPWRkPGADISDYFNYGFnE~TWk~Yc~kq~qlR~E~ 392 (1124)
. ...|| ..|.++..+..|+++++.+|.||
T Consensus 124 ~~~~~~~~~~~~~~p~-----------~~~mt~~ef~~yL~kvr~~R~eF 162 (312)
T PF11709_consen 124 TDSSPPLSSLLNSGPW-----------LAGMTEGEFERYLKKVRPLRPEF 162 (312)
T ss_pred ccccccccchhhcCCc-----------ccCCCHHHHHHHHHHhHHHHHHH
Confidence 2 12344 46999999999999999999998
No 8
>PF07067 DUF1340: Protein of unknown function (DUF1340); InterPro: IPR009774 This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 235 residues in length. The function of this family is unknown.
Probab=18.33 E-value=55 Score=35.52 Aligned_cols=28 Identities=39% Similarity=0.475 Sum_probs=25.1
Q ss_pred CcccccCCCCHHHHHHHHHHHHHhhhhh
Q 001204 365 ITDFFNFGLNEESWKDYCKQLEQHRLET 392 (1124)
Q Consensus 365 ISDYFNYGFnE~TWk~Yc~kq~qlR~E~ 392 (1124)
-+|=-|-|++|+-++.||+.++.||...
T Consensus 103 d~dk~NAGL~eeLfkq~~~Ei~~Lra~h 130 (236)
T PF07067_consen 103 DTDKTNAGLPEELFKQYREEIEELRAAH 130 (236)
T ss_pred CcccccCCCCHHHHHHHHHHHHHHHHhC
Confidence 4567799999999999999999999875
No 9
>PHA02669 hypothetical protein; Provisional
Probab=13.09 E-value=2.1e+02 Score=30.86 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=28.3
Q ss_pred cCcccCCCccCceEEeccCCCCCccccCCCCCCCCCCCCCceEEEecCCCCCccCcchh
Q 001204 142 EDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVE 200 (1124)
Q Consensus 142 ~ddwdSDSeDdlqiVlNd~~~~p~~~~r~~gdddddeD~d~lvivadg~~~~~~~~~~E 200 (1124)
-.-||||+||.=.+----++ ++--|--|..+..++.|++++|
T Consensus 73 ~SRWDSDtEdGdtvSTTSTS-----------------~gGTLtRv~~~~~p~~~~pmYE 114 (210)
T PHA02669 73 CSRWDSDTEDGDTVSTTSTS-----------------GGGTLSRVWVGGGPRFQHPMYE 114 (210)
T ss_pred cccccCcccCCceeeeeecC-----------------CCceEEeeeecCCCccCcchhh
Confidence 35699999976554443332 3446777777888887888765
No 10
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=11.20 E-value=1.6e+03 Score=29.16 Aligned_cols=29 Identities=38% Similarity=0.527 Sum_probs=16.9
Q ss_pred cCcccCCCccC---ceEEeccCCCCCccccCC
Q 001204 142 EDDWESDSEDD---LQIVLNEDNHRPMLIDGG 170 (1124)
Q Consensus 142 ~ddwdSDSeDd---lqiVlNd~~~~p~~~~r~ 170 (1124)
|.-||=..||= ||-|||=++--.+.|--+
T Consensus 6 G~rWDW~~ED~K~VvqRVL~L~SvE~sLIP~G 37 (828)
T PF04094_consen 6 GERWDWGPEDFKMVVQRVLNLDSVEASLIPQG 37 (828)
T ss_pred CCcCCCCHHHHHHHHHHHhccchhhhhccccc
Confidence 44566555542 444789877655555444
Done!