Query 001204
Match_columns 1124
No_of_seqs 120 out of 160
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 16:19:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001204.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001204hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rcqa2 c.1.6.1 (A:8-233) Alan 5.2 1.3E+02 0.0092 27.7 2.0 20 256-275 193-212 (226)
2 d2gdwa1 a.28.1.2 (A:8-83) Pept 2.9 3.7E+02 0.027 20.6 2.7 22 366-387 29-50 (76)
3 d1cxya_ d.120.1.1 (A:) Cytochr 2.9 1.6E+02 0.011 23.5 0.4 22 361-382 48-71 (81)
4 d2nt0a2 c.1.8.3 (A:78-431) Glu 2.9 1.7E+02 0.012 28.1 0.6 7 261-267 348-354 (354)
5 d2jxta1 d.355.1.1 (A:1-78) Rib 2.8 1.6E+02 0.012 24.2 0.4 15 812-826 39-53 (78)
6 d1iv8a1 b.71.1.1 (A:654-720) M 2.8 1.4E+02 0.01 24.3 -0.1 12 5-16 36-47 (67)
7 d1dnva_ b.121.5.3 (A:) Densovi 2.6 2.6E+02 0.019 29.1 1.7 9 6-14 297-305 (415)
8 d1bd0a2 c.1.6.1 (A:12-244) Ala 2.3 2.6E+02 0.019 25.6 1.1 16 257-272 201-216 (233)
9 d1zata2 d.335.1.1 (A:217-338) 2.3 4.2E+02 0.031 22.7 2.4 44 369-419 40-83 (122)
10 d1i40a_ b.40.5.1 (A:) Inorgani 2.1 1.1E+02 0.0082 28.0 -1.8 10 369-378 53-62 (175)
No 1
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.23 E-value=1.3e+02 Score=27.67 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=14.4
Q ss_pred CCCcccccCCCCCCCCCCcc
Q 001204 256 YHSQFKYVRPGAAPIPGSAT 275 (1124)
Q Consensus 256 ~HsqfKYVRPgaa~~pga~~ 275 (1124)
.+.+|-+||||.+..-..|.
T Consensus 193 ~~~~~d~vR~Gi~lYG~~P~ 212 (226)
T d1rcqa2 193 PKVPSDWVRPGILLYGATPF 212 (226)
T ss_dssp TTSCCSEECCCGGGGTCCSS
T ss_pred CCCCCCEEccCceeeCcCcC
Confidence 35679999999987554443
No 2
>d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]}
Probab=2.91 E-value=3.7e+02 Score=20.63 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=17.7
Q ss_pred cccccCCCCHHHHHHHHHHHHH
Q 001204 366 TDFFNFGLNEESWKDYCKQLEQ 387 (1124)
Q Consensus 366 SDYFNYGFnE~TWk~Yc~kq~q 387 (1124)
.+||.+|.+--+=...+.++++
T Consensus 29 ~~f~~lG~dSl~a~~l~~~i~~ 50 (76)
T d2gdwa1 29 DNFFQIGGHSLKAMAVAAQVHR 50 (76)
T ss_dssp TTSSTTTCTTHHHHHHHHHHHH
T ss_pred CCHHHcCCChHHHHHHHHHHHH
Confidence 6899999999988777776543
No 3
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]}
Probab=2.90 E-value=1.6e+02 Score=23.48 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=15.3
Q ss_pred CCCCCccccc-CCCCH-HHHHHHH
Q 001204 361 PGVDITDFFN-FGLNE-ESWKDYC 382 (1124)
Q Consensus 361 PGADISDYFN-YGFnE-~TWk~Yc 382 (1124)
-|.|+|++|+ |++.+ .++.++-
T Consensus 48 aGkD~t~~F~~~~~~~~Hs~~a~~ 71 (81)
T d1cxya_ 48 CGQESTEAWETKSYGEPHSSLAAR 71 (81)
T ss_dssp TTSBCHHHHHHTTTTCCCCHHHHH
T ss_pred cCCcchHHHHhcCCcccCCHHHHH
Confidence 4889999995 67655 3665544
No 4
>d2nt0a2 c.1.8.3 (A:78-431) Glucosylceramidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.88 E-value=1.7e+02 Score=28.09 Aligned_cols=7 Identities=29% Similarity=0.842 Sum_probs=6.3
Q ss_pred cccCCCC
Q 001204 261 KYVRPGA 267 (1124)
Q Consensus 261 KYVRPga 267 (1124)
|||||||
T Consensus 348 rfvrPGa 354 (354)
T d2nt0a2 348 KFIPEGS 354 (354)
T ss_dssp TTCCTTC
T ss_pred cccCcCC
Confidence 7999997
No 5
>d2jxta1 d.355.1.1 (A:1-78) Ribosomal protein LX, RplX {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=2.85 E-value=1.6e+02 Score=24.22 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=12.1
Q ss_pred hhhhhhhcccccccc
Q 001204 812 HLDEIGARHRGKARE 826 (1124)
Q Consensus 812 ~~de~g~RhR~K~Re 826 (1124)
--.|||||||-|-+-
T Consensus 39 ~Ys~~gSrHr~kr~~ 53 (78)
T d2jxta1 39 LYSEFGSKHRVPRSK 53 (78)
T ss_dssp HHHHHHHHTCCCGGG
T ss_pred HHHHHhhhcCCCccc
Confidence 567999999998554
No 6
>d1iv8a1 b.71.1.1 (A:654-720) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=2.79 E-value=1.4e+02 Score=24.32 Aligned_cols=12 Identities=58% Similarity=0.750 Sum_probs=8.5
Q ss_pred ccccchhhhhcc
Q 001204 5 DEFGDLYTDVLR 16 (1124)
Q Consensus 5 DEFGDLYtDvlr 16 (1124)
=|-|-.|||||-
T Consensus 36 ~e~~~~ytdv~t 47 (67)
T d1iv8a1 36 LEEGAIYTDVLT 47 (67)
T ss_dssp CCSSCEEEETTT
T ss_pred eccCcEEEeeec
Confidence 356778888874
No 7
>d1dnva_ b.121.5.3 (A:) Densovirus capsid protein {Galleria mellonella densovirus [TaxId: 37138]}
Probab=2.60 E-value=2.6e+02 Score=29.14 Aligned_cols=9 Identities=22% Similarity=0.800 Sum_probs=7.3
Q ss_pred cccchhhhh
Q 001204 6 EFGDLYTDV 14 (1124)
Q Consensus 6 EFGDLYtDv 14 (1124)
++.|||||+
T Consensus 297 ~~~~iyt~I 305 (415)
T d1dnva_ 297 DLFNIYSDI 305 (415)
T ss_dssp CCCCCCSSC
T ss_pred ccccccchh
Confidence 467899998
No 8
>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.29 E-value=2.6e+02 Score=25.64 Aligned_cols=16 Identities=31% Similarity=0.235 Sum_probs=12.1
Q ss_pred CCcccccCCCCCCCCC
Q 001204 257 HSQFKYVRPGAAPIPG 272 (1124)
Q Consensus 257 HsqfKYVRPgaa~~pg 272 (1124)
..+|-+||||.+..-.
T Consensus 201 ~~~~d~vR~Gi~lYG~ 216 (233)
T d1bd0a2 201 DRTFNMVRFGIAMYGL 216 (233)
T ss_dssp TSCTTEEEECGGGGTC
T ss_pred cccCCEECcCceeECC
Confidence 4578999999886533
No 9
>d1zata2 d.335.1.1 (A:217-338) L,D-transpeptidase, pre-catalytic domain {Enterococcus faecium [TaxId: 1352]}
Probab=2.26 E-value=4.2e+02 Score=22.71 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=29.8
Q ss_pred ccCCCCHHHHHHHHHHHHHhhhhhchhhhhhhhccCCCCCCCceeeecCCC
Q 001204 369 FNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGS 419 (1124)
Q Consensus 369 FNYGFnE~TWk~Yc~kq~qlR~E~tmqsKI~~yEsg~~lptGRaIQVEgg~ 419 (1124)
+||-||+..=++|+..+. ..++-..|-+.|. -+.|+.|.|.+|.
T Consensus 40 ~~v~~d~~~v~~yV~~La---~ky~T~gk~r~F~----t~~G~titV~gG~ 83 (122)
T d1zata2 40 GKVDLDTEQVRQYVTDLG---TKYNTSTNDTKFK----STKRGEVTVPVGT 83 (122)
T ss_dssp TEEEECHHHHHHHHHHHH---HHHCTTTSCEEEE----CSSSSEEEECCCS
T ss_pred CcEEECHHHHHHHHHHHH---HhcCCCCCceEEE----eCCCCEEEEcCCC
Confidence 389999999999998644 3333333434332 4679999998654
No 10
>d1i40a_ b.40.5.1 (A:) Inorganic pyrophosphatase {Escherichia coli [TaxId: 562]}
Probab=2.11 E-value=1.1e+02 Score=27.98 Aligned_cols=10 Identities=20% Similarity=0.468 Sum_probs=9.5
Q ss_pred ccCCCCHHHH
Q 001204 369 FNFGLNEESW 378 (1124)
Q Consensus 369 FNYGFnE~TW 378 (1124)
|||||=..||
T Consensus 53 ~nYGfiP~T~ 62 (175)
T d1i40a_ 53 CNYGYINHTL 62 (175)
T ss_dssp SEEEECTTCC
T ss_pred CcCCcccccc
Confidence 8999999998
Done!