Query 001206
Match_columns 1124
No_of_seqs 710 out of 3901
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 18:41:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1840 Kinesin light chain [C 99.9 1.3E-25 2.8E-30 265.7 34.8 295 124-419 194-490 (508)
2 KOG1839 Uncharacterized protei 99.9 1.2E-25 2.6E-30 279.1 24.1 357 1-359 765-1161(1236)
3 KOG1840 Kinesin light chain [C 99.9 1.3E-21 2.8E-26 231.9 31.2 230 126-356 238-467 (508)
4 KOG4626 O-linked N-acetylgluco 99.9 1.5E-21 3.2E-26 225.3 18.1 250 118-413 241-490 (966)
5 KOG4626 O-linked N-acetylgluco 99.8 2.7E-20 5.8E-25 215.1 14.3 242 126-413 215-456 (966)
6 TIGR00990 3a0801s09 mitochondr 99.8 1.1E-16 2.5E-21 197.3 29.3 248 125-413 327-576 (615)
7 KOG1130 Predicted G-alpha GTPa 99.7 3.8E-16 8.1E-21 174.7 19.3 281 126-416 52-352 (639)
8 TIGR00990 3a0801s09 mitochondr 99.7 2.8E-15 6.1E-20 185.0 26.8 243 130-412 161-500 (615)
9 KOG1130 Predicted G-alpha GTPa 99.6 3.4E-15 7.4E-20 167.1 16.5 267 77-359 48-335 (639)
10 KOG1126 DNA-binding cell divis 99.6 3.7E-15 8E-20 176.2 16.4 252 124-413 348-625 (638)
11 TIGR02521 type_IV_pilW type IV 99.6 2E-13 4.3E-18 142.7 26.1 171 126-326 28-198 (234)
12 PRK11788 tetratricopeptide rep 99.6 6.3E-13 1.4E-17 153.7 27.3 246 127-411 67-314 (389)
13 KOG1839 Uncharacterized protei 99.6 4E-16 8.7E-21 195.2 0.7 498 59-654 562-1069(1236)
14 PRK11788 tetratricopeptide rep 99.6 4.7E-13 1E-17 154.7 25.9 243 129-409 35-279 (389)
15 KOG2002 TPR-containing nuclear 99.6 5.9E-13 1.3E-17 162.3 27.2 330 86-445 250-678 (1018)
16 PRK15174 Vi polysaccharide exp 99.5 1.1E-12 2.3E-17 163.4 27.3 250 126-413 107-386 (656)
17 PF12807 eIF3_p135: Translatio 99.5 1.3E-14 2.8E-19 151.1 7.2 101 1-102 49-169 (169)
18 PRK11189 lipoprotein NlpI; Pro 99.5 1.7E-12 3.7E-17 146.6 22.7 228 143-410 40-267 (296)
19 TIGR02917 PEP_TPR_lipo putativ 99.5 3.9E-12 8.5E-17 159.2 27.5 175 128-326 21-222 (899)
20 PRK15174 Vi polysaccharide exp 99.5 2.9E-12 6.3E-17 159.5 26.0 246 127-410 74-349 (656)
21 COG3063 PilF Tfp pilus assembl 99.5 2.6E-12 5.5E-17 136.7 20.8 170 126-325 32-201 (250)
22 PRK11447 cellulose synthase su 99.5 7E-12 1.5E-16 165.4 29.4 181 125-326 299-524 (1157)
23 KOG1155 Anaphase-promoting com 99.5 4.6E-12 9.9E-17 144.7 23.2 189 136-357 337-525 (559)
24 PRK11447 cellulose synthase su 99.5 3.8E-12 8.3E-17 167.8 24.7 240 131-407 463-739 (1157)
25 TIGR02917 PEP_TPR_lipo putativ 99.4 1.7E-11 3.7E-16 153.5 27.8 244 128-410 464-734 (899)
26 KOG1126 DNA-binding cell divis 99.4 1.1E-12 2.4E-17 155.5 15.5 235 136-410 326-588 (638)
27 KOG0547 Translocase of outer m 99.4 5.4E-12 1.2E-16 144.8 20.4 247 127-413 324-571 (606)
28 PRK09782 bacteriophage N4 rece 99.4 1.2E-11 2.7E-16 158.6 23.8 234 128-413 476-711 (987)
29 TIGR02521 type_IV_pilW type IV 99.4 3.1E-11 6.6E-16 126.2 22.0 206 167-408 27-232 (234)
30 PRK12370 invasion protein regu 99.4 2E-11 4.2E-16 149.4 23.5 235 127-410 256-504 (553)
31 TIGR03302 OM_YfiO outer membra 99.4 4.2E-11 9.2E-16 129.6 23.0 179 126-324 30-230 (235)
32 PRK12370 invasion protein regu 99.4 3.9E-11 8.4E-16 146.8 24.6 170 125-325 291-469 (553)
33 PRK11189 lipoprotein NlpI; Pro 99.4 2E-10 4.3E-15 130.0 28.5 175 127-326 62-265 (296)
34 COG3063 PilF Tfp pilus assembl 99.4 5E-11 1.1E-15 127.0 21.1 208 168-411 32-239 (250)
35 PRK09782 bacteriophage N4 rece 99.4 6.5E-11 1.4E-15 152.1 25.2 233 131-411 511-743 (987)
36 KOG1173 Anaphase-promoting com 99.3 1.6E-11 3.6E-16 143.2 17.2 218 121-411 304-521 (611)
37 PRK04841 transcriptional regul 99.3 5.2E-10 1.1E-14 143.9 32.1 273 129-413 452-765 (903)
38 KOG1155 Anaphase-promoting com 99.3 8.9E-11 1.9E-15 134.4 20.9 244 133-408 266-536 (559)
39 KOG2003 TPR repeat-containing 99.3 1.6E-10 3.5E-15 130.9 20.8 230 133-410 458-691 (840)
40 KOG1125 TPR repeat-containing 99.3 1.1E-10 2.4E-15 136.9 18.7 213 131-415 287-534 (579)
41 TIGR03302 OM_YfiO outer membra 99.3 7.2E-10 1.6E-14 120.0 23.4 182 166-407 28-231 (235)
42 PF14938 SNAP: Soluble NSF att 99.2 3.8E-10 8.3E-15 126.7 19.5 228 169-407 33-265 (282)
43 KOG0547 Translocase of outer m 99.2 2.1E-09 4.5E-14 124.0 24.9 199 131-363 362-561 (606)
44 PRK10049 pgaA outer membrane p 99.2 2.9E-09 6.3E-14 135.2 29.0 248 128-410 48-341 (765)
45 KOG1129 TPR repeat-containing 99.2 1.3E-10 2.9E-15 128.1 14.3 235 133-413 227-463 (478)
46 KOG1173 Anaphase-promoting com 99.2 2.9E-10 6.4E-15 133.0 17.1 183 119-326 336-518 (611)
47 PRK10049 pgaA outer membrane p 99.2 4.8E-09 1E-13 133.3 29.4 156 133-321 19-174 (765)
48 KOG2003 TPR repeat-containing 99.2 1.4E-09 3E-14 123.5 21.2 234 131-409 421-656 (840)
49 PF14938 SNAP: Soluble NSF att 99.2 1.5E-09 3.2E-14 122.1 21.5 190 129-326 35-225 (282)
50 KOG2002 TPR-containing nuclear 99.2 1.4E-09 3.1E-14 133.4 22.4 283 129-441 270-558 (1018)
51 KOG1941 Acetylcholine receptor 99.2 3.8E-09 8.3E-14 118.0 23.6 275 128-412 82-364 (518)
52 PF13429 TPR_15: Tetratricopep 99.2 6.7E-11 1.5E-15 131.9 9.0 234 133-411 12-246 (280)
53 KOG0624 dsRNA-activated protei 99.2 7.2E-09 1.6E-13 115.2 24.4 261 123-412 32-374 (504)
54 PRK04841 transcriptional regul 99.1 1.2E-08 2.6E-13 131.3 30.3 193 132-329 412-605 (903)
55 cd05804 StaR_like StaR_like; a 99.1 5.7E-09 1.2E-13 119.4 24.3 171 129-324 43-213 (355)
56 KOG1129 TPR repeat-containing 99.1 7.8E-10 1.7E-14 122.1 16.0 177 121-326 282-458 (478)
57 KOG1125 TPR repeat-containing 99.1 1.9E-09 4.1E-14 126.8 17.5 185 122-330 312-531 (579)
58 KOG1941 Acetylcholine receptor 99.1 5.4E-09 1.2E-13 116.8 19.9 272 129-413 6-280 (518)
59 COG2956 Predicted N-acetylgluc 99.1 8.9E-09 1.9E-13 114.2 21.1 241 133-411 39-281 (389)
60 PF13424 TPR_12: Tetratricopep 99.1 6.4E-10 1.4E-14 100.1 9.9 78 209-287 1-78 (78)
61 KOG2076 RNA polymerase III tra 99.1 3.9E-08 8.5E-13 120.4 27.2 176 127-330 137-313 (895)
62 cd05804 StaR_like StaR_like; a 99.1 1.2E-08 2.6E-13 116.8 21.8 210 128-407 5-214 (355)
63 PF13424 TPR_12: Tetratricopep 99.0 1.1E-09 2.3E-14 98.7 10.2 78 251-329 1-78 (78)
64 PRK15359 type III secretion sy 99.0 4.4E-09 9.6E-14 106.8 13.4 110 149-285 13-122 (144)
65 PRK15179 Vi polysaccharide bio 99.0 1.2E-08 2.5E-13 127.3 19.5 170 129-327 48-218 (694)
66 KOG1174 Anaphase-promoting com 99.0 2.7E-08 5.8E-13 113.0 19.9 244 127-412 230-504 (564)
67 TIGR00540 hemY_coli hemY prote 99.0 1.5E-07 3.2E-12 111.3 27.3 251 129-413 118-404 (409)
68 KOG0550 Molecular chaperone (D 99.0 2.5E-08 5.3E-13 113.6 19.4 174 129-328 169-352 (486)
69 TIGR00540 hemY_coli hemY prote 98.9 1.8E-07 4E-12 110.6 26.8 245 128-408 83-366 (409)
70 PF13429 TPR_15: Tetratricopep 98.9 5.1E-09 1.1E-13 116.9 12.9 168 130-327 111-278 (280)
71 KOG0548 Molecular co-chaperone 98.9 4.7E-08 1E-12 114.6 20.9 181 128-326 223-421 (539)
72 PRK10747 putative protoheme IX 98.9 1.3E-07 2.8E-12 111.5 24.8 243 128-411 83-360 (398)
73 PRK15179 Vi polysaccharide bio 98.9 3.7E-08 8.1E-13 122.8 20.9 138 124-285 81-218 (694)
74 CHL00033 ycf3 photosystem I as 98.9 1.4E-08 3E-13 105.1 14.1 132 210-347 32-163 (168)
75 CHL00033 ycf3 photosystem I as 98.9 2.4E-08 5.1E-13 103.4 15.4 123 168-296 32-154 (168)
76 PRK15359 type III secretion sy 98.9 3.3E-08 7.1E-13 100.4 15.3 121 191-343 13-133 (144)
77 PRK10747 putative protoheme IX 98.9 2.4E-07 5.2E-12 109.2 24.5 239 131-411 120-393 (398)
78 PRK10370 formate-dependent nit 98.9 7.5E-08 1.6E-12 103.1 17.2 120 142-285 52-174 (198)
79 PF12569 NARP1: NMDA receptor- 98.8 1.3E-06 2.8E-11 105.8 29.1 154 254-423 193-349 (517)
80 KOG4162 Predicted calmodulin-b 98.8 8.1E-07 1.8E-11 107.7 26.4 256 120-412 469-787 (799)
81 COG2956 Predicted N-acetylgluc 98.8 5.2E-07 1.1E-11 100.5 22.7 253 124-413 64-316 (389)
82 PRK10370 formate-dependent nit 98.8 1.9E-07 4.1E-12 100.0 18.8 120 184-327 52-174 (198)
83 KOG0548 Molecular co-chaperone 98.8 2.6E-07 5.6E-12 108.5 19.1 196 127-347 255-468 (539)
84 PF13525 YfiO: Outer membrane 98.8 5.8E-07 1.3E-11 96.5 20.0 170 128-317 4-198 (203)
85 TIGR02552 LcrH_SycD type III s 98.8 1.7E-07 3.7E-12 92.5 14.7 103 167-285 13-115 (135)
86 PRK14574 hmsH outer membrane p 98.7 1.1E-06 2.4E-11 111.7 25.3 174 128-339 33-206 (822)
87 PLN03218 maturation of RBCL 1; 98.7 1.9E-06 4.2E-11 112.3 27.5 169 130-324 508-676 (1060)
88 PRK02603 photosystem I assembl 98.7 3.4E-07 7.4E-12 95.3 16.9 127 208-347 30-163 (172)
89 KOG2076 RNA polymerase III tra 98.7 2.9E-06 6.3E-11 104.5 27.2 128 255-397 414-544 (895)
90 PLN02789 farnesyltranstransfer 98.7 3.2E-06 6.8E-11 97.1 25.8 173 136-345 44-226 (320)
91 KOG0553 TPR repeat-containing 98.7 1.3E-07 2.7E-12 104.9 13.5 124 125-272 77-200 (304)
92 KOG1156 N-terminal acetyltrans 98.7 6.9E-07 1.5E-11 106.6 20.5 243 131-411 9-251 (700)
93 PRK15363 pathogenicity island 98.7 3.8E-07 8.2E-12 93.6 15.8 102 168-285 32-133 (157)
94 PRK15363 pathogenicity island 98.7 3.6E-07 7.8E-12 93.8 15.5 102 126-243 32-133 (157)
95 PRK02603 photosystem I assembl 98.7 5.4E-07 1.2E-11 93.8 17.1 114 166-292 30-150 (172)
96 PRK10866 outer membrane biogen 98.7 2.3E-06 5E-11 94.6 22.8 174 128-321 31-236 (243)
97 PRK14720 transcript cleavage f 98.7 8.8E-07 1.9E-11 111.9 21.7 143 124-285 26-179 (906)
98 PLN03218 maturation of RBCL 1; 98.7 3.6E-06 7.8E-11 109.8 27.7 240 129-408 542-783 (1060)
99 TIGR02552 LcrH_SycD type III s 98.7 3.2E-07 7E-12 90.5 13.8 102 209-326 13-114 (135)
100 KOG0550 Molecular chaperone (D 98.7 2.4E-07 5.2E-12 105.7 13.7 195 122-345 42-246 (486)
101 TIGR02795 tol_pal_ybgF tol-pal 98.6 4.7E-07 1E-11 86.4 13.7 113 214-341 3-115 (119)
102 PF09976 TPR_21: Tetratricopep 98.6 2.2E-06 4.9E-11 86.8 19.1 136 128-282 10-145 (145)
103 KOG0495 HAT repeat protein [RN 98.6 5.8E-06 1.3E-10 98.6 24.6 230 133-413 622-851 (913)
104 KOG2376 Signal recognition par 98.6 1.9E-05 4.1E-10 93.9 28.7 274 131-411 112-490 (652)
105 PLN03088 SGT1, suppressor of 98.6 4.1E-07 8.8E-12 105.9 14.9 96 131-242 4-99 (356)
106 COG5010 TadD Flp pilus assembl 98.6 7.4E-07 1.6E-11 97.3 15.2 157 133-321 70-226 (257)
107 TIGR02795 tol_pal_ybgF tol-pal 98.6 7.8E-07 1.7E-11 84.8 13.9 104 172-285 3-106 (119)
108 PLN03081 pentatricopeptide (PP 98.6 2.9E-06 6.2E-11 107.0 21.8 236 131-404 191-487 (697)
109 PLN03081 pentatricopeptide (PP 98.6 2.6E-06 5.6E-11 107.4 20.8 240 128-407 289-556 (697)
110 PLN02789 farnesyltranstransfer 98.5 4.3E-06 9.2E-11 96.0 19.9 186 125-350 67-266 (320)
111 PRK14574 hmsH outer membrane p 98.5 1.8E-05 3.8E-10 101.0 27.3 258 129-413 102-450 (822)
112 KOG1585 Protein required for f 98.5 4.5E-05 9.8E-10 82.6 25.7 226 165-402 25-250 (308)
113 COG5010 TadD Flp pilus assembl 98.5 1.5E-06 3.2E-11 95.0 14.4 135 122-280 93-227 (257)
114 KOG0553 TPR repeat-containing 98.5 7.9E-07 1.7E-11 98.7 12.5 122 169-314 79-200 (304)
115 PLN03088 SGT1, suppressor of 98.5 1.1E-06 2.4E-11 102.3 13.9 96 174-285 5-100 (356)
116 PF09976 TPR_21: Tetratricopep 98.5 9.4E-06 2E-10 82.2 18.7 123 183-324 23-145 (145)
117 KOG2376 Signal recognition par 98.5 9.7E-05 2.1E-09 88.1 29.3 159 132-305 82-270 (652)
118 KOG1174 Anaphase-promoting com 98.5 7.1E-06 1.5E-10 93.8 18.9 180 130-339 301-508 (564)
119 KOG1585 Protein required for f 98.4 4.2E-05 9.2E-10 82.8 22.3 193 125-326 27-219 (308)
120 KOG3617 WD40 and TPR repeat-co 98.4 6.4E-05 1.4E-09 91.4 25.6 116 167-284 854-996 (1416)
121 KOG1127 TPR repeat-containing 98.4 1.2E-05 2.5E-10 99.7 19.6 234 142-413 471-705 (1238)
122 PRK10866 outer membrane biogen 98.4 7.2E-05 1.6E-09 82.8 24.0 174 170-403 31-236 (243)
123 COG4783 Putative Zn-dependent 98.4 2.9E-05 6.3E-10 91.0 21.5 118 133-274 310-427 (484)
124 cd00189 TPR Tetratricopeptide 98.4 2.3E-06 5E-11 74.9 9.7 96 173-284 2-97 (100)
125 PF13525 YfiO: Outer membrane 98.4 2.9E-05 6.4E-10 83.4 20.1 159 212-411 4-173 (203)
126 KOG1128 Uncharacterized conser 98.4 5.3E-06 1.1E-10 100.4 15.2 165 136-331 457-621 (777)
127 cd00189 TPR Tetratricopeptide 98.3 4E-06 8.6E-11 73.4 10.2 96 131-242 2-97 (100)
128 PLN03077 Protein ECB2; Provisi 98.3 6.5E-05 1.4E-09 97.1 25.5 165 213-406 554-718 (857)
129 KOG1128 Uncharacterized conser 98.3 7.4E-06 1.6E-10 99.2 15.0 220 133-413 402-621 (777)
130 PRK14720 transcript cleavage f 98.3 2.2E-05 4.7E-10 99.7 19.4 221 164-413 24-257 (906)
131 PLN03077 Protein ECB2; Provisi 98.3 7.9E-05 1.7E-09 96.3 24.9 239 129-405 323-651 (857)
132 KOG0624 dsRNA-activated protei 98.3 8E-05 1.7E-09 83.7 20.7 145 166-326 33-184 (504)
133 PF13414 TPR_11: TPR repeat; P 98.2 4.5E-06 9.8E-11 73.2 8.5 65 170-242 2-67 (69)
134 KOG0495 HAT repeat protein [RN 98.2 0.00014 2.9E-09 87.3 23.2 225 142-413 563-787 (913)
135 PRK10153 DNA-binding transcrip 98.2 2.3E-05 4.9E-10 95.5 17.4 138 125-285 335-483 (517)
136 PF12688 TPR_5: Tetratrico pep 98.2 1.6E-05 3.4E-10 78.8 12.8 102 172-283 2-103 (120)
137 PF13414 TPR_11: TPR repeat; P 98.2 6.2E-06 1.3E-10 72.3 8.5 64 213-284 3-67 (69)
138 KOG0543 FKBP-type peptidyl-pro 98.2 2E-05 4.3E-10 90.9 14.6 141 127-283 206-354 (397)
139 PRK10803 tol-pal system protei 98.2 2.9E-05 6.3E-10 86.9 15.6 104 129-242 142-246 (263)
140 COG3071 HemY Uncharacterized e 98.2 0.00046 1E-08 79.4 25.2 245 128-413 83-362 (400)
141 KOG0543 FKBP-type peptidyl-pro 98.2 1.8E-05 4E-10 91.1 14.0 126 172-313 209-341 (397)
142 KOG4162 Predicted calmodulin-b 98.2 0.00048 1E-08 84.4 25.9 179 131-328 395-578 (799)
143 PF12895 Apc3: Anaphase-promot 98.2 1.1E-05 2.5E-10 73.9 9.6 84 141-239 1-84 (84)
144 PF12688 TPR_5: Tetratrico pep 98.2 3.2E-05 7E-10 76.6 13.3 102 214-325 2-103 (120)
145 PRK10803 tol-pal system protei 98.1 4.4E-05 9.5E-10 85.5 15.9 104 214-327 143-247 (263)
146 PF12895 Apc3: Anaphase-promot 98.1 1.3E-05 2.9E-10 73.5 9.8 84 225-323 1-84 (84)
147 KOG3060 Uncharacterized conser 98.1 0.00036 7.8E-09 76.3 22.0 159 142-326 25-183 (289)
148 COG0457 NrfG FOG: TPR repeat [ 98.1 0.00067 1.4E-08 67.6 22.8 173 129-327 59-232 (291)
149 KOG3785 Uncharacterized conser 98.1 0.00055 1.2E-08 77.4 22.9 55 131-193 59-113 (557)
150 KOG3617 WD40 and TPR repeat-co 98.1 0.0003 6.6E-09 85.8 21.4 162 136-326 807-996 (1416)
151 COG3071 HemY Uncharacterized e 98.1 0.0024 5.2E-08 73.8 27.5 242 129-411 118-393 (400)
152 KOG3060 Uncharacterized conser 98.1 0.0017 3.7E-08 71.1 25.1 161 135-327 58-221 (289)
153 PF12569 NARP1: NMDA receptor- 98.0 0.00083 1.8E-08 81.9 25.3 144 170-333 193-341 (517)
154 KOG3785 Uncharacterized conser 98.0 0.00013 2.9E-09 82.2 16.5 163 139-324 32-212 (557)
155 KOG4340 Uncharacterized conser 98.0 7.9E-05 1.7E-09 82.4 14.4 163 140-326 21-207 (459)
156 KOG1127 TPR repeat-containing 98.0 0.0002 4.4E-09 89.2 18.8 181 117-327 480-660 (1238)
157 KOG1156 N-terminal acetyltrans 98.0 0.00056 1.2E-08 82.5 21.7 171 129-323 41-211 (700)
158 PRK10153 DNA-binding transcrip 98.0 0.00012 2.5E-09 89.4 15.8 140 170-337 338-488 (517)
159 PRK11906 transcriptional regul 98.0 0.00025 5.5E-09 83.7 17.8 163 131-322 257-432 (458)
160 KOG4555 TPR repeat-containing 97.9 0.00047 1E-08 68.6 15.8 102 129-242 43-144 (175)
161 KOG1586 Protein required for f 97.9 0.0015 3.2E-08 70.8 20.9 154 143-325 28-182 (288)
162 KOG2300 Uncharacterized conser 97.9 0.0034 7.3E-08 73.8 25.1 251 138-404 284-552 (629)
163 KOG4555 TPR repeat-containing 97.9 0.0005 1.1E-08 68.4 15.2 100 173-284 45-144 (175)
164 PF08631 SPO22: Meiosis protei 97.8 0.0022 4.7E-08 72.4 22.4 142 139-285 3-151 (278)
165 COG1729 Uncharacterized protei 97.8 0.00012 2.5E-09 81.2 11.6 105 128-242 140-244 (262)
166 COG4783 Putative Zn-dependent 97.8 0.00076 1.6E-08 79.5 18.7 135 168-326 303-437 (484)
167 PF13432 TPR_16: Tetratricopep 97.8 6.3E-05 1.4E-09 65.3 7.6 60 133-200 1-60 (65)
168 PF13432 TPR_16: Tetratricopep 97.8 6.9E-05 1.5E-09 65.0 7.8 61 217-285 1-61 (65)
169 COG4105 ComL DNA uptake lipopr 97.8 0.0036 7.7E-08 69.2 21.6 174 129-319 34-226 (254)
170 COG4785 NlpI Lipoprotein NlpI, 97.8 0.0011 2.3E-08 71.2 16.8 204 167-408 61-266 (297)
171 COG0457 NrfG FOG: TPR repeat [ 97.8 0.0023 5E-08 63.7 18.8 176 124-327 90-266 (291)
172 PRK15331 chaperone protein Sic 97.8 0.00018 3.9E-09 74.6 10.8 101 125-241 33-133 (165)
173 KOG2300 Uncharacterized conser 97.8 0.0022 4.7E-08 75.3 20.5 199 135-350 329-536 (629)
174 COG2909 MalT ATP-dependent tra 97.7 0.0078 1.7E-07 75.4 26.5 264 130-404 416-684 (894)
175 KOG1586 Protein required for f 97.7 0.0036 7.7E-08 68.0 20.2 182 129-320 34-218 (288)
176 PF04733 Coatomer_E: Coatomer 97.7 0.00023 4.9E-09 80.9 11.8 171 131-343 104-277 (290)
177 KOG3616 Selective LIM binding 97.7 0.005 1.1E-07 74.6 22.6 189 129-324 661-909 (1636)
178 PLN03098 LPA1 LOW PSII ACCUMUL 97.7 0.00015 3.2E-09 85.5 9.8 71 209-284 71-141 (453)
179 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00053 1.1E-08 80.9 14.5 119 177-322 175-293 (395)
180 KOG2471 TPR repeat-containing 97.7 0.0012 2.6E-08 77.4 16.7 112 129-241 240-363 (696)
181 KOG2047 mRNA splicing factor [ 97.6 0.0058 1.3E-07 73.9 22.5 176 138-327 356-541 (835)
182 COG1729 Uncharacterized protei 97.6 0.00063 1.4E-08 75.5 13.2 102 216-327 144-245 (262)
183 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.00092 2E-08 78.9 15.4 116 138-280 178-293 (395)
184 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.00022 4.7E-09 84.1 10.0 72 166-242 70-141 (453)
185 COG4785 NlpI Lipoprotein NlpI, 97.6 0.00098 2.1E-08 71.4 13.5 172 127-325 63-265 (297)
186 PRK11906 transcriptional regul 97.5 0.0014 3E-08 77.6 15.4 147 173-345 257-415 (458)
187 KOG1070 rRNA processing protei 97.5 0.003 6.6E-08 81.4 18.9 215 167-413 1454-1668(1710)
188 PF13512 TPR_18: Tetratricopep 97.5 0.0013 2.9E-08 66.8 12.4 104 129-242 10-128 (142)
189 PF13374 TPR_10: Tetratricopep 97.5 0.00019 4.2E-09 56.3 5.0 42 212-253 1-42 (42)
190 KOG4234 TPR repeat-containing 97.4 0.0012 2.6E-08 70.0 11.8 100 216-326 98-197 (271)
191 KOG3616 Selective LIM binding 97.4 0.068 1.5E-06 65.3 27.4 192 215-409 663-912 (1636)
192 COG4235 Cytochrome c biogenesi 97.4 0.0038 8.2E-08 70.2 16.1 120 167-306 152-274 (287)
193 PRK15331 chaperone protein Sic 97.4 0.00084 1.8E-08 69.7 10.0 102 167-284 33-134 (165)
194 PF13374 TPR_10: Tetratricopep 97.4 0.00027 5.9E-09 55.4 5.0 42 170-211 1-42 (42)
195 KOG4340 Uncharacterized conser 97.4 0.056 1.2E-06 60.6 24.3 174 131-320 46-264 (459)
196 PF10345 Cohesin_load: Cohesin 97.4 0.053 1.1E-06 68.0 27.7 196 126-329 56-257 (608)
197 COG2909 MalT ATP-dependent tra 97.4 0.057 1.2E-06 68.0 27.1 228 175-412 419-651 (894)
198 KOG4648 Uncharacterized conser 97.3 0.00096 2.1E-08 75.3 10.1 98 129-242 97-194 (536)
199 COG4235 Cytochrome c biogenesi 97.3 0.0028 6.1E-08 71.2 13.8 120 119-258 146-268 (287)
200 KOG4234 TPR repeat-containing 97.3 0.0027 5.8E-08 67.5 12.6 104 128-242 94-197 (271)
201 KOG2047 mRNA splicing factor [ 97.3 0.02 4.4E-07 69.4 21.0 184 129-327 387-580 (835)
202 PF10300 DUF3808: Protein of u 97.3 0.0095 2.1E-07 72.2 18.9 178 141-338 200-388 (468)
203 COG4700 Uncharacterized protei 97.3 0.017 3.7E-07 61.0 17.8 158 139-327 66-223 (251)
204 COG5159 RPN6 26S proteasome re 97.3 0.025 5.5E-07 62.9 19.9 265 133-407 7-313 (421)
205 KOG1915 Cell cycle control pro 97.3 0.15 3.2E-06 60.4 26.9 244 134-407 78-350 (677)
206 PF04184 ST7: ST7 protein; In 97.3 0.015 3.2E-07 69.2 19.2 128 137-280 176-320 (539)
207 KOG1070 rRNA processing protei 97.3 0.032 7E-07 72.5 23.3 169 132-326 1461-1629(1710)
208 KOG2796 Uncharacterized conser 97.2 0.024 5.3E-07 62.6 19.0 159 128-308 176-334 (366)
209 PF12968 DUF3856: Domain of Un 97.2 0.019 4E-07 56.6 16.0 122 169-291 5-136 (144)
210 PF13371 TPR_9: Tetratricopept 97.2 0.0016 3.5E-08 57.5 8.0 59 219-285 1-59 (73)
211 PF13512 TPR_18: Tetratricopep 97.2 0.006 1.3E-07 62.2 12.8 106 170-285 9-129 (142)
212 KOG3081 Vesicle coat complex C 97.2 0.035 7.6E-07 61.6 19.5 142 173-350 110-255 (299)
213 PF09986 DUF2225: Uncharacteri 97.1 0.0046 1E-07 67.4 12.7 101 141-242 89-194 (214)
214 PF13371 TPR_9: Tetratricopept 97.1 0.0021 4.6E-08 56.8 8.4 58 177-242 1-58 (73)
215 COG4105 ComL DNA uptake lipopr 97.1 0.029 6.3E-07 62.1 18.2 155 213-408 34-196 (254)
216 KOG4642 Chaperone-dependent E3 97.0 0.003 6.6E-08 68.7 9.7 104 127-246 8-111 (284)
217 PF09986 DUF2225: Uncharacteri 97.0 0.0074 1.6E-07 65.8 12.6 101 184-285 90-195 (214)
218 PF14559 TPR_19: Tetratricopep 97.0 0.0019 4.2E-08 56.2 6.7 54 139-200 1-54 (68)
219 PF14559 TPR_19: Tetratricopep 96.9 0.0022 4.7E-08 55.9 6.5 53 182-242 2-54 (68)
220 PF12968 DUF3856: Domain of Un 96.9 0.055 1.2E-06 53.4 15.9 118 131-249 11-136 (144)
221 PF10300 DUF3808: Protein of u 96.9 0.087 1.9E-06 64.0 21.7 133 143-294 247-386 (468)
222 PF10602 RPN7: 26S proteasome 96.9 0.019 4.2E-07 60.7 14.1 126 193-327 18-143 (177)
223 KOG4648 Uncharacterized conser 96.8 0.0037 8.1E-08 70.7 8.7 96 174-285 100-195 (536)
224 PF04733 Coatomer_E: Coatomer 96.8 0.011 2.4E-07 67.3 12.7 136 132-296 134-272 (290)
225 PF02259 FAT: FAT domain; Int 96.8 0.15 3.2E-06 58.4 22.1 253 130-413 30-292 (352)
226 KOG1463 26S proteasome regulat 96.8 0.083 1.8E-06 60.3 18.6 262 130-407 49-315 (411)
227 KOG2041 WD40 repeat protein [G 96.8 0.66 1.4E-05 57.1 26.9 32 166-197 791-822 (1189)
228 PF10345 Cohesin_load: Cohesin 96.7 0.34 7.3E-06 60.9 25.9 156 167-330 55-212 (608)
229 PF13281 DUF4071: Domain of un 96.7 0.17 3.7E-06 59.4 21.6 154 142-315 112-277 (374)
230 COG3898 Uncharacterized membra 96.7 1 2.3E-05 52.6 27.0 232 134-411 125-361 (531)
231 COG4700 Uncharacterized protei 96.7 0.031 6.7E-07 59.2 13.8 134 131-286 91-224 (251)
232 PF08631 SPO22: Meiosis protei 96.6 0.54 1.2E-05 53.2 24.1 111 126-241 32-149 (278)
233 PF03704 BTAD: Bacterial trans 96.6 0.048 1E-06 55.0 14.0 112 215-334 8-133 (146)
234 KOG2471 TPR repeat-containing 96.5 0.011 2.3E-07 69.8 9.8 131 169-308 238-380 (696)
235 PF03704 BTAD: Bacterial trans 96.5 0.063 1.4E-06 54.1 14.5 112 131-250 8-133 (146)
236 KOG1915 Cell cycle control pro 96.5 2.1 4.5E-05 51.3 27.7 188 127-323 205-430 (677)
237 KOG4642 Chaperone-dependent E3 96.4 0.0099 2.2E-07 64.8 8.4 99 174-288 13-111 (284)
238 KOG2796 Uncharacterized conser 96.3 0.2 4.3E-06 55.7 17.1 139 171-326 177-315 (366)
239 PF10602 RPN7: 26S proteasome 96.3 0.083 1.8E-06 56.0 14.0 112 167-285 32-143 (177)
240 KOG2610 Uncharacterized conser 96.2 0.11 2.5E-06 59.1 15.4 167 134-324 108-274 (491)
241 KOG1464 COP9 signalosome, subu 96.2 0.24 5.1E-06 55.1 17.4 179 141-327 39-221 (440)
242 KOG1464 COP9 signalosome, subu 96.2 0.2 4.3E-06 55.7 16.7 207 130-346 66-277 (440)
243 KOG3081 Vesicle coat complex C 96.2 0.36 7.8E-06 53.9 18.8 171 132-341 111-281 (299)
244 PF04184 ST7: ST7 protein; In 96.2 0.087 1.9E-06 63.0 14.9 127 180-322 177-320 (539)
245 KOG0551 Hsp90 co-chaperone CNS 96.2 0.025 5.4E-07 64.3 9.9 105 127-243 79-183 (390)
246 PF12862 Apc5: Anaphase-promot 96.1 0.075 1.6E-06 50.3 11.3 82 223-306 8-90 (94)
247 KOG0545 Aryl-hydrocarbon recep 96.0 0.12 2.7E-06 56.7 14.0 105 130-242 179-293 (329)
248 COG2976 Uncharacterized protei 96.0 0.3 6.6E-06 52.3 16.4 99 214-326 90-188 (207)
249 PF11817 Foie-gras_1: Foie gra 96.0 1.6 3.4E-05 48.7 23.1 186 132-321 13-242 (247)
250 KOG1550 Extracellular protein 95.9 0.13 2.9E-06 63.7 15.5 149 145-326 228-393 (552)
251 PF04910 Tcf25: Transcriptiona 95.8 0.53 1.1E-05 55.4 19.6 152 166-327 35-223 (360)
252 COG0790 FOG: TPR repeat, SEL1 95.8 0.7 1.5E-05 52.0 19.8 144 130-311 74-236 (292)
253 PF12862 Apc5: Anaphase-promot 95.8 0.12 2.7E-06 48.8 11.5 82 181-264 8-90 (94)
254 COG2976 Uncharacterized protei 95.6 0.44 9.6E-06 51.1 15.8 103 169-285 87-189 (207)
255 PF02259 FAT: FAT domain; Int 95.6 0.48 1E-05 54.2 17.8 148 151-310 124-305 (352)
256 PF06552 TOM20_plant: Plant sp 95.6 0.092 2E-06 55.5 10.6 92 145-245 7-105 (186)
257 PF13176 TPR_7: Tetratricopept 95.5 0.027 5.8E-07 43.7 5.0 31 215-245 1-31 (36)
258 PF13176 TPR_7: Tetratricopept 95.5 0.028 6E-07 43.6 5.0 31 257-287 1-31 (36)
259 KOG2610 Uncharacterized conser 95.4 0.15 3.2E-06 58.3 12.1 134 133-282 141-274 (491)
260 COG3898 Uncharacterized membra 95.3 5.9 0.00013 46.7 24.5 228 139-410 164-394 (531)
261 PF08626 TRAPPC9-Trs120: Trans 95.3 0.95 2.1E-05 61.2 21.6 158 126-287 239-477 (1185)
262 PF00515 TPR_1: Tetratricopept 95.3 0.034 7.5E-07 41.9 4.8 30 213-242 1-30 (34)
263 PF00515 TPR_1: Tetratricopept 95.1 0.042 9E-07 41.5 4.8 30 171-200 1-30 (34)
264 COG0790 FOG: TPR repeat, SEL1 95.1 0.63 1.4E-05 52.4 16.3 152 138-326 50-220 (292)
265 KOG0545 Aryl-hydrocarbon recep 94.9 0.25 5.5E-06 54.4 11.7 107 171-285 178-294 (329)
266 KOG0551 Hsp90 co-chaperone CNS 94.8 0.21 4.6E-06 57.1 11.2 106 168-285 78-183 (390)
267 PF05843 Suf: Suppressor of fo 94.8 0.25 5.4E-06 56.0 11.9 134 173-327 3-137 (280)
268 PF13281 DUF4071: Domain of un 94.6 3.8 8.2E-05 48.5 21.1 175 131-326 143-334 (374)
269 PF07719 TPR_2: Tetratricopept 94.6 0.072 1.6E-06 39.8 4.8 31 171-201 1-31 (34)
270 PF07719 TPR_2: Tetratricopept 94.5 0.073 1.6E-06 39.8 4.8 29 214-242 2-30 (34)
271 PF12739 TRAPPC-Trs85: ER-Golg 94.5 3.1 6.7E-05 50.0 20.7 182 215-413 210-404 (414)
272 COG3118 Thioredoxin domain-con 94.4 1.6 3.4E-05 49.7 16.7 212 65-317 74-292 (304)
273 COG5159 RPN6 26S proteasome re 94.3 1.3 2.8E-05 49.9 15.6 148 176-332 8-160 (421)
274 KOG2053 Mitochondrial inherita 94.2 5.6 0.00012 50.9 22.5 119 140-286 20-138 (932)
275 KOG4322 Anaphase-promoting com 94.2 1.5 3.2E-05 51.9 16.5 190 129-325 273-470 (482)
276 PF06552 TOM20_plant: Plant sp 94.1 0.17 3.6E-06 53.7 7.9 79 209-288 21-106 (186)
277 KOG2041 WD40 repeat protein [G 94.0 14 0.00031 46.2 24.5 32 125-156 792-823 (1189)
278 PF05843 Suf: Suppressor of fo 94.0 0.73 1.6E-05 52.3 13.5 130 135-285 7-137 (280)
279 KOG2581 26S proteasome regulat 93.9 9.7 0.00021 45.1 22.1 144 135-285 132-277 (493)
280 PF13431 TPR_17: Tetratricopep 93.9 0.047 1E-06 42.1 2.6 34 193-234 1-34 (34)
281 KOG4322 Anaphase-promoting com 93.9 1.8 4E-05 51.2 16.4 224 178-407 238-470 (482)
282 PF13428 TPR_14: Tetratricopep 93.8 0.12 2.7E-06 41.7 5.1 42 172-221 2-43 (44)
283 PF13181 TPR_8: Tetratricopept 93.8 0.12 2.6E-06 38.8 4.7 31 171-201 1-31 (34)
284 PF13428 TPR_14: Tetratricopep 93.7 0.15 3.4E-06 41.1 5.4 42 130-179 2-43 (44)
285 PF13181 TPR_8: Tetratricopept 93.7 0.15 3.2E-06 38.3 5.0 30 256-285 2-31 (34)
286 KOG1308 Hsp70-interacting prot 93.7 0.07 1.5E-06 61.1 4.4 98 129-242 114-211 (377)
287 KOG3783 Uncharacterized conser 93.6 5.6 0.00012 48.5 20.1 183 129-326 267-520 (546)
288 KOG1550 Extracellular protein 93.5 1.9 4.1E-05 53.7 17.1 132 130-284 245-393 (552)
289 KOG1538 Uncharacterized conser 93.5 4.4 9.6E-05 50.0 18.9 125 175-322 636-772 (1081)
290 PF13431 TPR_17: Tetratricopep 93.4 0.074 1.6E-06 41.0 2.9 33 151-191 1-33 (34)
291 KOG4814 Uncharacterized conser 93.2 5.1 0.00011 49.6 19.0 105 130-244 355-459 (872)
292 PF12739 TRAPPC-Trs85: ER-Golg 93.2 4.9 0.00011 48.3 19.3 176 131-328 210-401 (414)
293 KOG0376 Serine-threonine phosp 93.2 0.078 1.7E-06 63.1 3.9 97 130-242 5-101 (476)
294 KOG1914 mRNA cleavage and poly 93.1 3 6.5E-05 50.7 16.8 180 125-326 282-464 (656)
295 PF08626 TRAPPC9-Trs120: Trans 92.9 5.3 0.00011 54.3 21.0 231 169-409 240-553 (1185)
296 KOG4814 Uncharacterized conser 92.9 6.9 0.00015 48.5 19.4 106 214-329 355-460 (872)
297 KOG4014 Uncharacterized conser 92.9 1.3 2.8E-05 47.1 11.9 158 142-331 40-238 (248)
298 KOG0985 Vesicle coat protein c 92.8 13 0.00028 48.3 22.0 181 136-329 1055-1311(1666)
299 KOG2561 Adaptor protein NUB1, 92.5 3 6.4E-05 49.5 15.3 117 170-288 162-300 (568)
300 KOG2581 26S proteasome regulat 92.5 4.6 9.9E-05 47.7 16.6 142 263-411 134-279 (493)
301 KOG2053 Mitochondrial inherita 92.4 2 4.3E-05 54.7 14.6 107 184-315 22-128 (932)
302 PF00244 14-3-3: 14-3-3 protei 92.2 22 0.00048 39.5 25.2 186 131-332 3-204 (236)
303 PF04910 Tcf25: Transcriptiona 92.2 6.1 0.00013 46.7 17.9 148 129-285 40-223 (360)
304 PF08424 NRDE-2: NRDE-2, neces 92.2 14 0.0003 42.9 20.6 153 166-326 14-183 (321)
305 COG3118 Thioredoxin domain-con 92.1 10 0.00022 43.4 18.5 126 175-324 138-263 (304)
306 KOG1463 26S proteasome regulat 91.9 5.5 0.00012 46.1 16.2 140 143-288 102-242 (411)
307 KOG0890 Protein kinase of the 91.9 4 8.7E-05 56.9 17.6 177 122-309 1663-1858(2382)
308 PF10579 Rapsyn_N: Rapsyn N-te 91.7 1.4 3E-05 40.8 9.2 72 128-204 5-76 (80)
309 KOG4563 Cell cycle-regulated h 91.3 1.5 3.2E-05 51.0 10.9 63 127-189 39-101 (400)
310 KOG0686 COP9 signalosome, subu 91.2 1.8 3.8E-05 51.0 11.6 106 211-323 148-255 (466)
311 PF11207 DUF2989: Protein of u 91.1 4.3 9.3E-05 44.0 13.7 100 200-318 100-199 (203)
312 KOG0376 Serine-threonine phosp 91.1 0.3 6.4E-06 58.4 5.4 95 175-285 8-102 (476)
313 PF08424 NRDE-2: NRDE-2, neces 91.0 17 0.00036 42.3 19.6 127 146-285 48-184 (321)
314 PF09670 Cas_Cas02710: CRISPR- 90.8 7.5 0.00016 46.3 16.9 144 126-287 128-273 (379)
315 KOG1920 IkappaB kinase complex 90.7 22 0.00049 47.1 21.5 99 225-324 920-1026(1265)
316 COG5290 IkappaB kinase complex 90.6 2.5 5.4E-05 53.0 12.5 40 294-334 939-978 (1243)
317 smart00101 14_3_3 14-3-3 homol 90.5 34 0.00074 38.4 23.9 188 132-332 4-206 (244)
318 KOG2561 Adaptor protein NUB1, 90.3 4 8.6E-05 48.5 13.4 120 128-247 162-301 (568)
319 PF11817 Foie-gras_1: Foie gra 90.3 3.5 7.6E-05 45.9 12.9 92 144-239 153-244 (247)
320 PF10579 Rapsyn_N: Rapsyn N-te 89.9 2.8 6.1E-05 38.8 9.4 69 173-246 8-76 (80)
321 KOG1308 Hsp70-interacting prot 89.1 0.14 3E-06 58.8 0.5 89 180-284 123-211 (377)
322 COG5187 RPN7 26S proteasome re 88.9 11 0.00023 43.0 14.9 134 144-286 90-223 (412)
323 PF04190 DUF410: Protein of un 88.8 46 0.001 37.6 23.7 158 141-327 2-171 (260)
324 PF07145 PAM2: Ataxin-2 C-term 88.4 0.25 5.4E-06 33.0 1.2 13 926-938 5-17 (18)
325 KOG4014 Uncharacterized conser 88.4 8.4 0.00018 41.3 12.9 142 117-288 56-237 (248)
326 KOG4507 Uncharacterized conser 88.4 0.9 2E-05 55.2 6.6 94 218-326 611-705 (886)
327 PF10516 SHNi-TPR: SHNi-TPR; 87.9 1.1 2.3E-05 35.8 4.7 35 172-206 2-36 (38)
328 KOG1538 Uncharacterized conser 87.6 39 0.00084 42.3 19.3 23 132-154 648-670 (1081)
329 PF09670 Cas_Cas02710: CRISPR- 87.6 17 0.00037 43.2 16.7 139 173-329 133-273 (379)
330 PF04781 DUF627: Protein of un 87.5 3.9 8.5E-05 40.3 9.3 101 135-241 2-106 (111)
331 KOG0687 26S proteasome regulat 87.5 13 0.00027 43.1 14.5 131 147-286 82-212 (393)
332 KOG1924 RhoA GTPase effector D 87.2 2.6 5.7E-05 52.8 9.6 21 828-848 547-567 (1102)
333 PF13174 TPR_6: Tetratricopept 87.0 0.89 1.9E-05 33.5 3.7 28 215-242 2-29 (33)
334 KOG0985 Vesicle coat protein c 86.6 73 0.0016 42.0 21.5 96 133-237 1224-1336(1666)
335 KOG0508 Ankyrin repeat protein 86.6 4 8.7E-05 48.8 10.4 134 131-267 247-391 (615)
336 PF15015 NYD-SP12_N: Spermatog 86.6 7.4 0.00016 46.2 12.3 111 129-247 176-296 (569)
337 PF13174 TPR_6: Tetratricopept 86.5 0.98 2.1E-05 33.3 3.7 29 172-200 1-29 (33)
338 smart00028 TPR Tetratricopepti 86.5 0.97 2.1E-05 31.3 3.5 29 214-242 2-30 (34)
339 KOG0508 Ankyrin repeat protein 86.2 0.98 2.1E-05 53.7 5.2 135 170-309 244-391 (615)
340 KOG0307 Vesicle coat complex C 86.2 5.3 0.00011 52.1 11.9 26 377-402 585-611 (1049)
341 KOG4507 Uncharacterized conser 86.1 5.1 0.00011 49.1 11.0 99 214-326 213-312 (886)
342 KOG3807 Predicted membrane pro 86.1 26 0.00056 40.6 15.9 69 125-203 180-248 (556)
343 KOG2422 Uncharacterized conser 86.1 25 0.00054 43.5 16.7 175 226-410 251-450 (665)
344 COG4649 Uncharacterized protei 85.5 31 0.00067 37.0 15.0 131 134-283 63-195 (221)
345 PF04781 DUF627: Protein of un 85.0 6.6 0.00014 38.7 9.4 100 177-282 2-105 (111)
346 PF10516 SHNi-TPR: SHNi-TPR; 84.9 1.9 4E-05 34.5 4.6 36 298-333 2-37 (38)
347 PF10952 DUF2753: Protein of u 84.8 9.9 0.00022 38.2 10.5 74 174-247 4-84 (140)
348 smart00028 TPR Tetratricopepti 84.7 1.3 2.9E-05 30.5 3.5 29 172-200 2-30 (34)
349 KOG0686 COP9 signalosome, subu 84.5 5 0.00011 47.5 9.7 114 119-240 140-256 (466)
350 KOG0687 26S proteasome regulat 83.2 22 0.00049 41.2 13.9 131 189-328 82-212 (393)
351 PF09613 HrpB1_HrpK: Bacterial 83.2 12 0.00026 39.3 11.0 92 123-230 4-95 (160)
352 KOG2114 Vacuolar assembly/sort 83.1 16 0.00035 46.8 13.8 49 152-201 350-398 (933)
353 KOG2908 26S proteasome regulat 83.0 79 0.0017 37.1 18.1 95 222-319 84-179 (380)
354 KOG2422 Uncharacterized conser 83.0 64 0.0014 40.2 18.2 175 142-327 251-449 (665)
355 KOG4521 Nuclear pore complex, 82.4 57 0.0012 43.4 18.3 185 215-412 922-1136(1480)
356 PRK13184 pknD serine/threonine 82.3 1.8E+02 0.0038 38.9 23.4 69 171-241 512-580 (932)
357 COG5187 RPN7 26S proteasome re 81.7 24 0.00053 40.3 13.2 132 188-328 92-223 (412)
358 PF10952 DUF2753: Protein of u 81.5 10 0.00022 38.2 9.1 73 216-288 4-83 (140)
359 PF11207 DUF2989: Protein of u 81.4 6.7 0.00015 42.6 8.7 66 206-276 134-199 (203)
360 PRK10941 hypothetical protein; 81.0 12 0.00025 42.6 10.9 80 212-304 180-259 (269)
361 PRK13184 pknD serine/threonine 80.9 9.5 0.00021 50.2 11.4 104 189-299 486-591 (932)
362 PF15015 NYD-SP12_N: Spermatog 80.4 19 0.00042 42.9 12.4 100 220-327 183-292 (569)
363 cd09034 BRO1_Alix_like Protein 80.1 22 0.00047 41.5 13.2 101 227-327 135-281 (345)
364 KOG1497 COP9 signalosome, subu 80.1 43 0.00092 38.9 14.6 113 168-283 100-212 (399)
365 PF14853 Fis1_TPR_C: Fis1 C-te 80.0 9 0.00019 32.9 7.3 41 298-343 2-42 (53)
366 COG3629 DnrI DNA-binding trans 79.7 45 0.00097 38.2 14.9 76 254-337 152-227 (280)
367 KOG1920 IkappaB kinase complex 78.8 43 0.00094 44.6 15.9 63 176-239 957-1025(1265)
368 PF10255 Paf67: RNA polymerase 78.6 11 0.00025 45.0 10.2 71 174-245 125-196 (404)
369 KOG0890 Protein kinase of the 78.6 42 0.0009 47.7 16.4 110 167-286 1666-1786(2382)
370 cd09239 BRO1_HD-PTP_like Prote 78.3 42 0.00091 39.8 14.8 116 212-327 113-282 (361)
371 KOG1497 COP9 signalosome, subu 78.2 1.3E+02 0.0028 35.2 17.6 107 211-323 101-210 (399)
372 PF04053 Coatomer_WDAD: Coatom 77.6 63 0.0014 39.4 16.3 48 138-193 270-317 (443)
373 COG4649 Uncharacterized protei 76.5 79 0.0017 34.0 14.3 148 136-325 46-195 (221)
374 PF10373 EST1_DNA_bind: Est1 D 76.0 24 0.00053 39.1 11.6 62 148-225 1-62 (278)
375 TIGR02710 CRISPR-associated pr 75.7 53 0.0011 39.2 14.5 67 126-195 127-195 (380)
376 PF10373 EST1_DNA_bind: Est1 D 75.2 18 0.0004 40.0 10.4 62 190-267 1-62 (278)
377 KOG4521 Nuclear pore complex, 74.7 93 0.002 41.6 16.9 133 123-273 914-1072(1480)
378 cd09247 BRO1_Alix_like_2 Prote 74.4 1.8E+02 0.0038 34.4 18.5 36 296-331 252-287 (346)
379 KOG0639 Transducin-like enhanc 74.3 22 0.00047 43.1 10.6 26 1074-1099 576-601 (705)
380 PF12309 KBP_C: KIF-1 binding 74.1 2E+02 0.0043 34.4 20.6 140 171-328 171-340 (371)
381 PF09613 HrpB1_HrpK: Bacterial 74.1 30 0.00066 36.4 10.7 88 169-272 8-95 (160)
382 smart00101 14_3_3 14-3-3 homol 73.8 31 0.00067 38.7 11.4 57 187-243 144-201 (244)
383 KOG2114 Vacuolar assembly/sort 73.4 70 0.0015 41.4 15.2 33 127-159 366-398 (933)
384 PF07271 Cytadhesin_P30: Cytad 73.4 12 0.00026 42.0 7.8 70 836-912 203-275 (279)
385 KOG3824 Huntingtin interacting 73.3 7.4 0.00016 44.5 6.3 66 127-200 114-179 (472)
386 PF14853 Fis1_TPR_C: Fis1 C-te 73.2 19 0.00042 30.8 7.5 30 256-285 2-31 (53)
387 KOG1258 mRNA processing protei 72.9 2.6E+02 0.0057 35.2 23.5 173 128-326 296-470 (577)
388 PRK10941 hypothetical protein; 72.9 23 0.0005 40.3 10.3 82 254-348 180-261 (269)
389 KOG1258 mRNA processing protei 72.7 2.6E+02 0.0057 35.1 21.0 129 167-318 293-421 (577)
390 cd09240 BRO1_Alix Protein-inte 72.3 1.1E+02 0.0024 36.0 16.2 33 297-329 255-287 (346)
391 KOG1924 RhoA GTPase effector D 72.1 8.4 0.00018 48.6 6.9 26 920-948 628-653 (1102)
392 cd09034 BRO1_Alix_like Protein 71.3 55 0.0012 38.1 13.4 18 186-203 136-153 (345)
393 PF10255 Paf67: RNA polymerase 69.6 6.9 0.00015 46.8 5.4 74 215-288 124-197 (404)
394 PF05053 Menin: Menin; InterP 69.6 55 0.0012 40.6 12.8 72 169-243 275-348 (618)
395 KOG1310 WD40 repeat protein [G 69.5 18 0.00038 44.2 8.6 97 127-239 372-471 (758)
396 PF04097 Nic96: Nup93/Nic96; 69.3 3.2E+02 0.007 34.8 22.6 18 137-154 266-283 (613)
397 PF07721 TPR_4: Tetratricopept 68.9 6.5 0.00014 28.3 3.2 25 214-238 2-26 (26)
398 TIGR02561 HrpB1_HrpK type III 68.7 39 0.00085 35.2 9.9 92 123-230 4-95 (153)
399 TIGR02710 CRISPR-associated pr 68.5 1.1E+02 0.0023 36.8 14.7 59 176-237 135-195 (380)
400 COG3947 Response regulator con 68.2 50 0.0011 38.0 11.3 75 129-211 279-353 (361)
401 cd09241 BRO1_ScRim20-like Prot 67.3 1.2E+02 0.0027 35.8 15.2 35 296-330 236-270 (355)
402 KOG4849 mRNA cleavage factor I 67.2 25 0.00053 40.7 8.8 33 865-897 290-322 (498)
403 KOG3024 Uncharacterized conser 66.9 2.4E+02 0.0053 32.5 19.6 135 140-280 17-152 (312)
404 KOG3364 Membrane protein invol 66.3 41 0.00088 34.6 9.2 70 169-242 30-100 (149)
405 PF14561 TPR_20: Tetratricopep 65.9 38 0.00082 32.0 8.6 33 209-241 18-50 (90)
406 PF07721 TPR_4: Tetratricopept 65.4 7 0.00015 28.1 2.8 24 172-195 2-25 (26)
407 TIGR03362 VI_chp_7 type VI sec 65.0 2.5E+02 0.0055 32.6 16.7 164 140-330 110-283 (301)
408 COG3629 DnrI DNA-binding trans 64.7 1E+02 0.0022 35.4 13.3 76 169-252 151-226 (280)
409 COG3014 Uncharacterized protei 63.5 2.6E+02 0.0055 33.1 15.8 70 259-328 62-156 (449)
410 PF05053 Menin: Menin; InterP 63.5 61 0.0013 40.3 11.6 73 254-329 276-350 (618)
411 KOG2034 Vacuolar sorting prote 63.5 1.6E+02 0.0035 38.5 15.7 59 176-245 363-421 (911)
412 PF14858 DUF4486: Domain of un 63.5 2.9E+02 0.0062 34.6 17.3 72 258-329 154-229 (542)
413 KOG0994 Extracellular matrix g 63.4 5.3E+02 0.011 35.1 20.9 24 262-285 1532-1555(1758)
414 KOG0276 Vesicle coat complex C 63.4 69 0.0015 40.0 12.0 48 182-242 648-695 (794)
415 KOG3364 Membrane protein invol 63.1 56 0.0012 33.7 9.5 70 212-285 31-101 (149)
416 KOG4563 Cell cycle-regulated h 62.7 19 0.00041 42.2 7.0 64 255-318 41-104 (400)
417 KOG3783 Uncharacterized conser 62.6 3.9E+02 0.0085 33.4 22.4 132 179-329 239-378 (546)
418 cd09243 BRO1_Brox_like Protein 62.4 1.9E+02 0.004 34.4 15.3 33 296-328 247-279 (353)
419 cd09239 BRO1_HD-PTP_like Prote 60.4 65 0.0014 38.2 11.2 15 187-201 139-153 (361)
420 cd09243 BRO1_Brox_like Protein 60.3 2.1E+02 0.0046 34.0 15.3 38 123-160 103-152 (353)
421 COG3014 Uncharacterized protei 59.9 3.6E+02 0.0077 32.0 18.4 69 217-285 62-155 (449)
422 KOG3024 Uncharacterized conser 59.6 1.5E+02 0.0031 34.2 12.9 62 260-322 90-152 (312)
423 PF14561 TPR_20: Tetratricopep 59.5 88 0.0019 29.6 9.8 34 167-200 18-51 (90)
424 KOG2460 Signal recognition par 58.8 4.5E+02 0.0097 32.8 25.7 33 381-413 424-456 (593)
425 COG3947 Response regulator con 58.8 67 0.0015 37.0 10.2 73 255-335 279-351 (361)
426 PF04190 DUF410: Protein of un 58.6 3.1E+02 0.0068 30.9 24.3 150 129-285 10-171 (260)
427 PF00244 14-3-3: 14-3-3 protei 58.1 3.1E+02 0.0066 30.6 18.6 60 229-288 142-202 (236)
428 cd09240 BRO1_Alix Protein-inte 57.9 1.9E+02 0.0041 34.1 14.4 39 124-162 114-161 (346)
429 PF10858 DUF2659: Protein of u 57.8 2.7E+02 0.0057 29.8 14.1 102 177-284 99-200 (220)
430 KOG0307 Vesicle coat complex C 56.9 97 0.0021 41.1 12.4 13 812-824 710-722 (1049)
431 PF08311 Mad3_BUB1_I: Mad3/BUB 56.7 1E+02 0.0022 31.0 10.3 86 227-324 40-126 (126)
432 PF04053 Coatomer_WDAD: Coatom 56.6 1.8E+02 0.0039 35.6 14.3 62 215-276 349-410 (443)
433 PF10858 DUF2659: Protein of u 55.8 1.3E+02 0.0029 32.0 11.0 105 131-241 95-199 (220)
434 TIGR02561 HrpB1_HrpK type III 55.4 64 0.0014 33.7 8.6 88 211-314 8-95 (153)
435 KOG2460 Signal recognition par 55.4 2.5E+02 0.0053 34.9 14.6 33 300-332 425-457 (593)
436 COG3914 Spy Predicted O-linked 55.0 1.8E+02 0.0039 36.5 13.6 112 163-285 60-172 (620)
437 cd09244 BRO1_Rhophilin Protein 54.3 4.2E+02 0.0091 31.5 16.4 38 124-161 101-147 (350)
438 COG4976 Predicted methyltransf 53.6 14 0.00031 40.9 3.8 57 262-326 2-58 (287)
439 KOG1953 Targeting complex (TRA 53.6 1.7E+02 0.0036 38.9 13.4 49 126-176 242-290 (1235)
440 PF03097 BRO1: BRO1-like domai 52.8 49 0.0011 39.0 8.6 35 296-330 238-272 (377)
441 cd09247 BRO1_Alix_like_2 Prote 52.2 2.6E+02 0.0057 32.9 14.4 33 255-287 253-285 (346)
442 cd09244 BRO1_Rhophilin Protein 51.6 1.7E+02 0.0037 34.7 12.6 16 187-202 131-146 (350)
443 cd09242 BRO1_ScBro1_like Prote 51.6 3.3E+02 0.0072 32.1 15.1 33 297-329 244-276 (348)
444 cd09246 BRO1_Alix_like_1 Prote 51.0 4.9E+02 0.011 30.8 20.0 33 295-327 245-277 (353)
445 KOG0546 HSP90 co-chaperone CPR 50.4 28 0.00061 40.8 5.8 115 216-343 225-350 (372)
446 cd09245 BRO1_UmRIM23-like Prot 50.3 3.3E+02 0.0072 33.0 15.0 174 209-412 113-329 (413)
447 KOG3824 Huntingtin interacting 50.1 31 0.00067 39.8 5.8 59 176-242 121-179 (472)
448 PF03635 Vps35: Vacuolar prote 49.1 2.7E+02 0.0058 36.5 14.9 117 169-288 590-718 (762)
449 cd02681 MIT_calpain7_1 MIT: do 49.0 1E+02 0.0022 28.5 8.1 34 128-161 5-38 (76)
450 KOG2063 Vacuolar assembly/sort 48.6 1.1E+02 0.0023 40.5 11.0 193 128-325 503-712 (877)
451 cd09241 BRO1_ScRim20-like Prot 48.6 3.2E+02 0.007 32.3 14.4 38 125-162 102-148 (355)
452 cd02679 MIT_spastin MIT: domai 48.5 64 0.0014 30.1 6.7 35 213-247 8-42 (79)
453 TIGR03504 FimV_Cterm FimV C-te 47.9 35 0.00075 28.2 4.4 25 133-157 3-27 (44)
454 PF12309 KBP_C: KIF-1 binding 47.8 5.6E+02 0.012 30.7 24.8 84 227-310 138-235 (371)
455 TIGR03504 FimV_Cterm FimV C-te 47.1 29 0.00063 28.7 3.8 26 258-283 2-27 (44)
456 KOG1076 Translation initiation 47.1 6E+02 0.013 32.8 16.4 52 276-327 632-683 (843)
457 KOG4672 Uncharacterized conser 46.7 1.8E+02 0.0038 34.9 11.3 18 926-943 425-445 (487)
458 cd02682 MIT_AAA_Arch MIT: doma 46.4 1E+02 0.0022 28.5 7.6 37 127-163 4-40 (75)
459 KOG1914 mRNA cleavage and poly 46.4 7.1E+02 0.015 31.4 29.1 123 216-357 289-421 (656)
460 KOG2034 Vacuolar sorting prote 46.0 3.3E+02 0.0071 35.9 14.4 60 133-203 362-421 (911)
461 cd02683 MIT_1 MIT: domain cont 45.9 1.1E+02 0.0025 28.1 8.0 37 127-163 4-40 (77)
462 cd02681 MIT_calpain7_1 MIT: do 45.3 2.2E+02 0.0048 26.3 9.7 32 299-330 8-39 (76)
463 PRK14707 hypothetical protein; 45.2 2.1E+02 0.0046 40.9 13.1 157 175-335 961-1121(2710)
464 COG4976 Predicted methyltransf 45.2 26 0.00057 38.9 4.3 57 221-285 3-59 (287)
465 cd09242 BRO1_ScBro1_like Prote 45.1 3.2E+02 0.007 32.2 13.7 35 379-413 244-278 (348)
466 KOG1310 WD40 repeat protein [G 45.1 81 0.0017 38.9 8.5 84 226-322 387-470 (758)
467 PRK15180 Vi polysaccharide bio 45.0 98 0.0021 37.8 9.1 125 137-285 297-421 (831)
468 KOG2236 Uncharacterized conser 44.5 61 0.0013 39.2 7.4 30 891-922 451-480 (483)
469 cd02678 MIT_VPS4 MIT: domain c 42.9 1.3E+02 0.0029 27.3 7.9 36 128-163 5-40 (75)
470 PF04212 MIT: MIT (microtubule 41.9 2.2E+02 0.0048 25.1 9.1 34 299-332 7-40 (69)
471 PF04212 MIT: MIT (microtubule 41.9 1E+02 0.0022 27.3 6.9 35 128-162 4-38 (69)
472 PHA02537 M terminase endonucle 41.4 1.5E+02 0.0033 33.1 9.5 105 221-327 91-208 (230)
473 COG3914 Spy Predicted O-linked 41.2 8.6E+02 0.019 30.9 16.9 112 205-327 60-172 (620)
474 PF07163 Pex26: Pex26 protein; 40.2 4.2E+02 0.009 30.7 12.6 137 175-321 39-182 (309)
475 cd02679 MIT_spastin MIT: domai 40.0 1.1E+02 0.0023 28.6 6.8 57 173-240 10-66 (79)
476 KOG0132 RNA polymerase II C-te 39.7 65 0.0014 41.2 6.9 7 864-870 626-632 (894)
477 COG5129 MAK16 Nuclear protein 39.5 1.5E+02 0.0032 32.7 8.6 15 502-516 274-288 (303)
478 cd02682 MIT_AAA_Arch MIT: doma 39.5 3E+02 0.0065 25.5 9.5 36 297-332 6-41 (75)
479 cd02683 MIT_1 MIT: domain cont 39.3 2.8E+02 0.0061 25.6 9.5 41 300-340 9-50 (77)
480 KOG2070 Guanine nucleotide exc 39.2 87 0.0019 38.2 7.5 76 872-971 420-495 (661)
481 PRK14707 hypothetical protein; 38.3 2.5E+02 0.0055 40.3 12.3 195 138-336 1008-1206(2710)
482 TIGR03362 VI_chp_7 type VI sec 38.0 7E+02 0.015 29.0 14.6 100 99-203 172-282 (301)
483 PF04097 Nic96: Nup93/Nic96; 37.9 4.1E+02 0.0088 33.9 13.9 32 209-240 410-441 (613)
484 KOG4279 Serine/threonine prote 37.5 1.5E+02 0.0032 38.2 9.3 115 161-285 191-317 (1226)
485 KOG3807 Predicted membrane pro 36.5 7.9E+02 0.017 29.1 17.2 119 181-315 194-329 (556)
486 cd02656 MIT MIT: domain contai 35.8 2.1E+02 0.0046 25.7 8.1 36 128-163 5-40 (75)
487 KOG0546 HSP90 co-chaperone CPR 35.8 36 0.00078 40.0 3.7 104 174-285 225-339 (372)
488 cd09248 BRO1_Rhophilin_1 Prote 35.2 8.8E+02 0.019 29.3 17.9 33 212-244 105-146 (384)
489 PF15336 Auts2: Autism suscept 35.1 2.8E+02 0.0061 30.5 9.9 17 861-877 70-86 (212)
490 PF12854 PPR_1: PPR repeat 34.1 71 0.0015 24.4 4.0 26 255-280 7-32 (34)
491 PF07710 P53_tetramer: P53 tet 33.9 23 0.0005 29.1 1.3 15 1059-1073 6-20 (42)
492 KOG0132 RNA polymerase II C-te 33.7 3.9E+02 0.0083 34.7 12.1 25 889-913 633-657 (894)
493 cd02684 MIT_2 MIT: domain cont 33.3 2.5E+02 0.0054 25.8 8.1 61 124-184 1-62 (75)
494 cd02680 MIT_calpain7_2 MIT: do 33.1 3.8E+02 0.0082 24.8 9.1 50 308-360 17-67 (75)
495 PHA02537 M terminase endonucle 33.1 2.4E+02 0.0051 31.6 9.4 107 180-288 92-211 (230)
496 KOG2588 Predicted DNA-binding 33.0 4.5E+02 0.0097 35.0 12.9 26 855-880 118-143 (953)
497 PF07720 TPR_3: Tetratricopept 32.6 1.1E+02 0.0023 24.2 4.8 29 172-200 2-32 (36)
498 smart00745 MIT Microtubule Int 32.6 2.5E+02 0.0055 25.2 8.1 61 124-184 3-64 (77)
499 PF12854 PPR_1: PPR repeat 32.4 76 0.0017 24.3 3.9 26 213-238 7-32 (34)
500 KOG0128 RNA-binding protein SA 32.2 1.3E+03 0.029 30.5 19.4 97 185-284 164-260 (881)
No 1
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.95 E-value=1.3e-25 Score=265.74 Aligned_cols=295 Identities=25% Similarity=0.295 Sum_probs=269.3
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001206 124 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 203 (1124)
Q Consensus 124 ~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er 203 (1124)
.......++..++..|..+|+|+.|+..|++|+++.++..|..|+..+..+..+|.+|..+++|.+|+.+|++|+.+.+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34555667777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001206 204 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 283 (1124)
Q Consensus 204 ~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALe 283 (1124)
.+|.+|+.++.++.|||.+|...|+|++|..|+++|++|+++..+..++.++..+.+++.++..++++++|+.+|+++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHhHHHHHHHHh
Q 001206 284 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARN 361 (1124)
Q Consensus 284 i~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La--~l~~k~~e~aeAl~~ 361 (1124)
+....+|.+++.++.++.+||.+|..+|+|.+|.++|++|+++.++..|..+..+...+..|+ +...+.+..+..++.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999988888877777776 455555565555555
Q ss_pred ccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhccCCCCC
Q 001206 362 GTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLT 419 (1124)
Q Consensus 362 ~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~~~~~~~ 419 (1124)
....+. ...+.+++++...|.+|+.+|..+|+|++|+++.++++..+..-.+..+..
T Consensus 434 ~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 434 EAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred HHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 554444 566788999999999999999999999999999999999988877544443
No 2
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.94 E-value=1.2e-25 Score=279.07 Aligned_cols=357 Identities=29% Similarity=0.445 Sum_probs=324.5
Q ss_pred CchhhHHHHHHHHHhhcCChhhHHHHHHHHHHhhcCCccCCCC-----------C-----------C----C-----CCc
Q 001206 1 MIVRAFKHIIQAVISAVGNTQRMAVSIAAALNLMLGVHESDGL-----------N-----------K----S-----HNV 49 (1124)
Q Consensus 1 MIaRaaKHIlr~~l~~l~~~~~~a~aIsh~LNcLLG~~~~e~~-----------~-----------~----s-----~~~ 49 (1124)
+++|++||||+.+.+.++ ..++.+++||+|||+||..+.... . . | .-.
T Consensus 765 i~~RslKhvlK~~~r~l~-~~~i~ta~SH~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~ 843 (1236)
T KOG1839|consen 765 IALRSLKHVLKDNLRLLG-ADHIQTAASHALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLS 843 (1236)
T ss_pred HHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccc
Confidence 478999999999999875 789999999999999998543100 0 0 0 012
Q ss_pred cHHHHHHHHHHHHHhhccccccCccc------ccchHHHHHHHHHHHHHHHhhcccCCCCC---CcchHHhHHhhhhhhh
Q 001206 50 HPLVWRWLELFLMKRYEWDLNGLNFK------DVRKFAILRGLCHKVGIELVSRDFDMDSP---SPFRKIDVVSLVPVHK 120 (1124)
Q Consensus 50 ~plvw~~I~~~lrkrf~y~L~~~~~~------~l~k~~LLreL~~k~GIqL~~rdY~fd~a---~~f~~eDI~~L~pv~K 120 (1124)
...+|++|+.+.+.+|.+.+...... ...++.+.+..|.+.|++...+.|+++.. ..|...||+++.|+.|
T Consensus 844 ~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik 923 (1236)
T KOG1839|consen 844 VSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIK 923 (1236)
T ss_pred hhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccc
Confidence 34589999999999999988754332 35577888999999999999999999873 8999999999999999
Q ss_pred hhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001206 121 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 200 (1124)
Q Consensus 121 ~~~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI 200 (1124)
+..+...++...++.|.....+|.+.+|.+ ..+++.++..++|..|+..+.+|..|+.++..+|++++|+.+.++|+-+
T Consensus 924 ~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii 1002 (1236)
T KOG1839|consen 924 HSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACII 1002 (1236)
T ss_pred cCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceee
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001206 201 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 280 (1124)
Q Consensus 201 ~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lek 280 (1124)
.++..|.+++++...|.+|+..++..++...|+..+.++++++.-.+|++||..+.+..+++.++...++++.|+++++.
T Consensus 1003 ~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~ 1082 (1236)
T KOG1839|consen 1003 SERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLES 1082 (1236)
T ss_pred echhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHH
Q 001206 281 ALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAA 359 (1124)
Q Consensus 281 ALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl 359 (1124)
|+.+..+++|+.+..++.++..+|+++..++++..|+.+.+.++.++...+|++|.++.....|+..........+++.
T Consensus 1083 A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~~~~T~~~v~~Qk~~ 1161 (1236)
T KOG1839|consen 1083 ALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWLNLSTAIAVKIQKKL 1161 (1236)
T ss_pred HHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987666665555544
No 3
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.90 E-value=1.3e-21 Score=231.90 Aligned_cols=230 Identities=24% Similarity=0.268 Sum_probs=216.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~l 205 (1124)
...+..+..+|..|..+++|.+|+.+|++|+.+.+..+|.+|+..+.++.+||.+|+..|+|++|..++++|+.|+++.+
T Consensus 238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~ 317 (508)
T KOG1840|consen 238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL 317 (508)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh
Confidence 33455556699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 206 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
+..++++...+.+++.++..++++++|+.+|+++++++....|.+++.++.++.+||.+|..+|+|++|.++|++|+.+.
T Consensus 318 ~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 318 GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHH
Q 001206 286 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQ 356 (1124)
Q Consensus 286 ~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~a 356 (1124)
++..|..+..+...+.+||..|.+++++.+|.+.|.++..|. +.+|++|+.+...+.+|+.++...+...
T Consensus 398 ~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 398 RELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYE 467 (508)
T ss_pred HhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence 999999899999999999999999999999999999999999 9999999999999999986555443333
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=1.5e-21 Score=225.26 Aligned_cols=250 Identities=18% Similarity=0.131 Sum_probs=205.6
Q ss_pred hhhhhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001206 118 VHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 197 (1124)
Q Consensus 118 v~K~~~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KA 197 (1124)
..+..........+|+++|.+|...+.|+.|+.+|.+|+.+ .|..+.++.+||.+|+.+|+.+.|+..|++|
T Consensus 241 y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykra 312 (966)
T KOG4626|consen 241 YEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRA 312 (966)
T ss_pred HHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHH
Confidence 34455566667788889999999999999999999988876 5777888999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 001206 198 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 277 (1124)
Q Consensus 198 LeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~ 277 (1124)
|++ .|....+|+|||..+...|+..+|..||.+||.+ .+..+.+++|||.+|..+|.+++|..+
T Consensus 313 l~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--------~p~hadam~NLgni~~E~~~~e~A~~l 376 (966)
T KOG4626|consen 313 LEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--------CPNHADAMNNLGNIYREQGKIEEATRL 376 (966)
T ss_pred Hhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhccchHHHHH
Confidence 886 5777889999999999999999999999999986 345578889999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHH
Q 001206 278 LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQE 357 (1124)
Q Consensus 278 lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~ae 357 (1124)
|++|+++. +..+.++.+||.+|.++|++++|+.+|++|++| .|...+++.+++......++...
T Consensus 377 y~~al~v~--------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 377 YLKALEVF--------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHHHhhC--------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHH
Confidence 99999886 667889999999999999999999999999987 45667777777755444444444
Q ss_pred HHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 358 AARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 358 Al~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
++.....++ ...+..++.+.+||.+|...|+..+|+..|+.+|++....-
T Consensus 441 A~q~y~rAI------~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 441 AIQCYTRAI------QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHHHH------hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 443322221 23457889999999999999999999999999999987654
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=2.7e-20 Score=215.05 Aligned_cols=242 Identities=19% Similarity=0.151 Sum_probs=205.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~l 205 (1124)
...|-++-++|-.+..+|+...|+.+|++|+.+ +|....+|.+||.+|...+.|+.|+..|.+|+.+
T Consensus 215 p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----- 281 (966)
T KOG4626|consen 215 PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----- 281 (966)
T ss_pred CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-----
Confidence 344556677788888899999999999999876 7888899999999999999999999999999887
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 206 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.|..+.++.|||.+|+.+|..+.|+.+|++|+++ .|....+|+|||.++...|+..+|..+|.+||.++
T Consensus 282 ---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 282 ---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred ---CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 4667889999999999999999999999999985 56778899999999999999999999999999987
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCC
Q 001206 286 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 365 (1124)
Q Consensus 286 ~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~ 365 (1124)
+..+.++++||.+|..+|.+++|..+|++|++++ +....+..+|+.+.++++...+++..+...
T Consensus 351 --------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 351 --------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEFAAAHNNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred --------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhhhhhhhhHHHHHHhcccHHHHHHHHHHH
Confidence 3457889999999999999999999999999874 455567778887777777777766544333
Q ss_pred CchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 366 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 366 ~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
+. -.+..++.|.++|..|..+|+...|+.+|.+|+++.....
T Consensus 415 lr------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A 456 (966)
T KOG4626|consen 415 LR------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA 456 (966)
T ss_pred Hh------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH
Confidence 22 2356789999999999999999999999999999877654
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=1.1e-16 Score=197.30 Aligned_cols=248 Identities=15% Similarity=0.081 Sum_probs=193.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001206 125 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 204 (1124)
Q Consensus 125 ~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~ 204 (1124)
....+..+..+|.+++.+|++++|+.+|++++.+ +|....+|..+|.++..+|++++|+.+|++++.+
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---- 394 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL---- 394 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence 3566778899999999999999999999999977 5677889999999999999999999999999886
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001206 205 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 205 lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei 284 (1124)
.|....+++++|.+|+.+|++++|+.+|++++.+ .|.....+.++|.++..+|++++|+.+|++++..
T Consensus 395 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 395 ----NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2444678999999999999999999999999985 4555677899999999999999999999999976
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHH-HHHhHHHHHHHHhc
Q 001206 285 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW-LEYF-ESKAFEQQEAARNG 362 (1124)
Q Consensus 285 ~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~-La~l-~~k~~e~aeAl~~~ 362 (1124)
. +....++..+|.+|..+|++++|+.+|++++++..... ..+......... +..+ ..+.++.+..+...
T Consensus 463 ~--------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~-~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~k 533 (615)
T TIGR00990 463 F--------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK-PMYMNVLPLINKALALFQWKQDFIEAENLCEK 533 (615)
T ss_pred C--------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc-cccccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4 33457788999999999999999999999998743211 111111111111 1111 12344444444333
Q ss_pred cCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 363 TRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 363 ~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
....+ +....++..+|.++..+|++++|+.+|++++++.++..
T Consensus 534 Al~l~--------p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 534 ALIID--------PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHhcC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 22221 22335678899999999999999999999999987643
No 7
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.70 E-value=3.8e-16 Score=174.66 Aligned_cols=281 Identities=15% Similarity=0.088 Sum_probs=214.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~l 205 (1124)
......|-++|..|+..++|++|++|...-|.+.+.+ .+...-+.+..+||.++-.+|.|++|+.++.+-|.+.+++
T Consensus 52 ~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL- 128 (639)
T KOG1130|consen 52 STLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL- 128 (639)
T ss_pred HHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhccccccccccchhhhhcccchHHHHHHHHhHHHHHH-
Confidence 3445667889999999999999999998888776554 3344567788999999999999999999999999999876
Q ss_pred CCCChhHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 001206 206 GLDHPDTMKSYGDLAVFYYRLQH--------------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 265 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~lGd--------------------yeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy 265 (1124)
.|...-.++|+|||.+|...|+ ++.|.++|..-|++.+... +......+|-|||..|
T Consensus 129 -gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTy 205 (639)
T KOG1130|consen 129 -GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLG--DRLAQGRAYGNLGNTY 205 (639)
T ss_pred -hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhh--hHHhhcchhcccCcee
Confidence 3445567899999999998875 4667778888787777654 4455678899999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 001206 266 EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 345 (1124)
Q Consensus 266 ~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~L 345 (1124)
+-+|+|+.|+.+.+.-|.+.++. .+....-+++.+||.+|.-+|+|+.|++||++++.+..++ |....... ....|
T Consensus 206 YlLGdf~~ai~~H~~RL~ia~ef--GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel-g~r~vEAQ-scYSL 281 (639)
T KOG1130|consen 206 YLLGDFDQAIHFHKLRLEIAQEF--GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL-GNRTVEAQ-SCYSL 281 (639)
T ss_pred eeeccHHHHHHHHHHHHHHHHHh--hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh-cchhHHHH-HHHHh
Confidence 99999999999999999999876 3444556789999999999999999999999999988775 33322222 22233
Q ss_pred HHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhccCC
Q 001206 346 EYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDN 416 (1124)
Q Consensus 346 a~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~~~~ 416 (1124)
+..+.-..+.++++.....++.......+.......++.||.+|...|+.++|+.+.++.+++..+.....
T Consensus 282 gNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~s 352 (639)
T KOG1130|consen 282 GNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTS 352 (639)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc
Confidence 32222222333444333333333333334445667899999999999999999999999999988877433
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.69 E-value=2.8e-15 Score=185.04 Aligned_cols=243 Identities=16% Similarity=0.121 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----------
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL----------- 198 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KAL----------- 198 (1124)
..++.+|.+|+..|+|++|+..|.+++++ ++....+|..+|.+|..+|++++|+..|.+++
T Consensus 161 ~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~ 232 (615)
T TIGR00990 161 VYYSNRAACHNALGDWEKVVEDTTAALEL--------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSA 232 (615)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHH
Confidence 45778889999999999999999999876 56677889999999999999998876543322
Q ss_pred --------------------------------------------------------------------------------
Q 001206 199 -------------------------------------------------------------------------------- 198 (1124)
Q Consensus 199 -------------------------------------------------------------------------------- 198 (1124)
T Consensus 233 ~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~ 312 (615)
T TIGR00990 233 QAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEE 312 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHH
Confidence
Q ss_pred --HHHHHhcC--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 001206 199 --DINERELG--LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA 274 (1124)
Q Consensus 199 --eI~er~lg--~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeA 274 (1124)
..+++.+. ...+....++.++|.+++.+|++++|+.+|++++++ .|....++.++|.++..+|++++|
T Consensus 313 A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 313 AARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 11122111 123556677888999999999999999999999875 456677888999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HHHHh
Q 001206 275 LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY--FESKA 352 (1124)
Q Consensus 275 le~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~--l~~k~ 352 (1124)
+.+|++++++. + ....+++.+|.+|..+|++++|+.+|++++++ .+++... ...++. ...+.
T Consensus 385 ~~~~~~al~~~-----p---~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-----~P~~~~~---~~~la~~~~~~g~ 448 (615)
T TIGR00990 385 EEDFDKALKLN-----S---EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-----DPDFIFS---HIQLGVTQYKEGS 448 (615)
T ss_pred HHHHHHHHHhC-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CccCHHH---HHHHHHHHHHCCC
Confidence 99999998763 2 33567888999999999999999999999876 3444433 333333 23334
Q ss_pred HHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhh
Q 001206 353 FEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 412 (1124)
Q Consensus 353 ~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl 412 (1124)
++.+......... ..+....++..+|.++..+|++++|+.+|++++++....
T Consensus 449 ~~eA~~~~~~al~--------~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 449 IASSMATFRRCKK--------NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 4444433322211 123345788899999999999999999999999987653
No 9
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.63 E-value=3.4e-15 Score=167.08 Aligned_cols=267 Identities=16% Similarity=0.171 Sum_probs=204.1
Q ss_pred cchHHHHHHHHHHHHHHHh-hcccCCCCCCcchHHhHHhhhhhhhhhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001206 77 VRKFAILRGLCHKVGIELV-SRDFDMDSPSPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKA 155 (1124)
Q Consensus 77 l~k~~LLreL~~k~GIqL~-~rdY~fd~a~~f~~eDI~~L~pv~K~~~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kA 155 (1124)
...+.+|..|+-++|-.+. .++ +.++..|+..|+ .+.+.+......|+.--++|..+..+|.|++|+.++.+-
T Consensus 48 TeDl~tLSAIYsQLGNAyfyL~D--Y~kAl~yH~hDl----tlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rh 121 (639)
T KOG1130|consen 48 TEDLSTLSAIYSQLGNAYFYLKD--YEKALKYHTHDL----TLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRH 121 (639)
T ss_pred chHHHHHHHHHHHhcchhhhHhh--HHHHHhhhhhhH----HHHHHhcchhccccccccccchhhhhcccchHHHHHHHH
Confidence 3466778888888886431 122 345556666665 234555666667777888999999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001206 156 LAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD--------------------FNQATIYQQKALDINERELGLDHPDTMKS 215 (1124)
Q Consensus 156 L~i~e~i~G~d~p~~A~ay~nLG~ly~~lGd--------------------ydeAle~~~KALeI~er~lg~D~p~~a~a 215 (1124)
|.+.+++ .+...-+++|++||.+|...|+ ++.|.++|+.-|++.++. .|.....++
T Consensus 122 Ld~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l--gDr~aqGRa 197 (639)
T KOG1130|consen 122 LDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL--GDRLAQGRA 197 (639)
T ss_pred hHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh--hhHHhhcch
Confidence 9998887 4455678899999999998764 456777777777777664 344556789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 001206 216 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 295 (1124)
Q Consensus 216 y~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~ 295 (1124)
|.|||+.|+-+|+|+.|+.+.+.-|.|.++.. +....-.++.|||.++.-+|+|+.|+++|++++.+..++ .+...
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel--g~r~v 273 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL--GNRTV 273 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh--cchhH
Confidence 99999999999999999999999999988754 444556789999999999999999999999999999887 34455
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHH
Q 001206 296 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAA 359 (1124)
Q Consensus 296 ~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl 359 (1124)
-+...+.||..|....++.+|+.|+++-+.|.+++-+ -.....++..|+.......+..+++
T Consensus 274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D--riGe~RacwSLgna~~alg~h~kAl 335 (639)
T KOG1130|consen 274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED--RIGELRACWSLGNAFNALGEHRKAL 335 (639)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhhhhHHHHH
Confidence 6888899999999999999999999999999887632 2222333334443333334444443
No 10
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=3.7e-15 Score=176.17 Aligned_cols=252 Identities=10% Similarity=0.040 Sum_probs=197.5
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------------------HHhcCCCCchhHHHHHHH
Q 001206 124 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKL--------------------------VAVCGPYHRMTAGAYSLL 177 (1124)
Q Consensus 124 ~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~--------------------------e~i~G~d~p~~A~ay~nL 177 (1124)
.....+..+.++|+.|+.+++|++|+.+|+.+-++. .+.+-..++....+|..+
T Consensus 348 h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~ 427 (638)
T KOG1126|consen 348 HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCAL 427 (638)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHh
Confidence 334456889999999999999999999999887651 111112355667789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001206 178 AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 257 (1124)
Q Consensus 178 G~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~a 257 (1124)
|.||..+++++.|+.+|++|+.+ +|..+.+|..+|.=+....+||+|+.+|++||.+ .+....+
T Consensus 428 GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnA 491 (638)
T KOG1126|consen 428 GNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNA 491 (638)
T ss_pred cchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHH
Confidence 99999999999999999999987 5678889999999999999999999999999975 4666789
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHH
Q 001206 258 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 337 (1124)
Q Consensus 258 l~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~ 337 (1124)
|+.||.+|.++++++.|+-+|++|+++. |....++..+|.+|.++|+.++|+++|++|+.+ ++.++.
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~~IN--------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-----d~kn~l 558 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAVEIN--------PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-----DPKNPL 558 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhhcCC--------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-----CCCCch
Confidence 9999999999999999999999999885 455667777999999999999999999999875 566665
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 338 TQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 338 t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
...-...+.+... .+..+....+.. ..-.+..+.++..||.+|...|+...|+..|--|+.+..+-.
T Consensus 559 ~~~~~~~il~~~~-~~~eal~~LEeL--------k~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 559 CKYHRASILFSLG-RYVEALQELEEL--------KELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hHHHHHHHHHhhc-chHHHHHHHHHH--------HHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 5444444432222 222211111111 111234557899999999999999999999999888877643
No 11
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.61 E-value=2e-13 Score=142.70 Aligned_cols=171 Identities=22% Similarity=0.223 Sum_probs=146.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~l 205 (1124)
...+..++.+|..++..|++++|+.+|++++.. ++....++..+|.+|..+|++++|+.++++++.+.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---- 95 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN---- 95 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----
Confidence 345778899999999999999999999999875 45567899999999999999999999999999862
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 206 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
+....++.++|.++...|++++|+.+|++++... ..+.....+.++|.++...|++++|..+|++++...
T Consensus 96 ----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 96 ----PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred ----CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3345688999999999999999999999998731 234456678899999999999999999999998864
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 286 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 286 ~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
++ ....+..+|.++..+|++++|+.++++++++
T Consensus 166 -----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 166 -----PQ---RPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred -----cC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 2456788999999999999999999988765
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.57 E-value=6.3e-13 Score=153.66 Aligned_cols=246 Identities=13% Similarity=0.041 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
.....++.+|..+..+|++++|+.++++++... .........++..||.+|...|++++|+.+|++++..
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------ 136 (389)
T PRK11788 67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE------ 136 (389)
T ss_pred ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC------
Confidence 346678889999999999999999999887531 0111234567899999999999999999999998864
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
.+....++..++.++...|++++|++++++++.... ..........+.++|.++..+|++++|+.+|+++++..
T Consensus 137 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 210 (389)
T PRK11788 137 --GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG---DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD- 210 (389)
T ss_pred --CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-
Confidence 344567889999999999999999999999876421 11122345567889999999999999999999998863
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHhHHHHHHHHhccC
Q 001206 287 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTR 364 (1124)
Q Consensus 287 k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La--~l~~k~~e~aeAl~~~~~ 364 (1124)
+....++..+|.+|...|++++|+.++++++.. ++.+. ......++ +...+..+.+........
T Consensus 211 -------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~--~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 211 -------PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-----DPEYL--SEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred -------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----ChhhH--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 223567888999999999999999999999875 22221 12222232 333333444333322211
Q ss_pred CCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 365 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 365 ~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
.. .+.. ..+..++.++..+|++++|+..++++++..+.
T Consensus 277 ~~--------~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~ 314 (389)
T PRK11788 277 EE--------YPGA-DLLLALAQLLEEQEGPEAAQALLREQLRRHPS 314 (389)
T ss_pred Hh--------CCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC
Confidence 11 1111 23478999999999999999999999987543
No 13
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.57 E-value=4e-16 Score=195.16 Aligned_cols=498 Identities=42% Similarity=0.553 Sum_probs=339.8
Q ss_pred HHHHHhhccccccCcccccchHHHHHHHHHHHHHHHhhcccCCCCCCcchHHhHHhhhhhhhhhcCChHHHHHHHHHHHH
Q 001206 59 LFLMKRYEWDLNGLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSSADGRQLLESSKT 138 (1124)
Q Consensus 59 ~~lrkrf~y~L~~~~~~~l~k~~LLreL~~k~GIqL~~rdY~fd~a~~f~~eDI~~L~pv~K~~~~~s~~Ar~Ll~lG~~ 138 (1124)
.++..+|...+......-+.++...+-++....+....++|.++...+|...|+..+.++++...+...+.+ +
T Consensus 562 ~~~~~k~pHkl~~lr~Eli~~f~~~~l~~~i~~~e~~~~~~~~ds~~~~~~~d~~~~~~v~~l~~~is~d~~---e---- 634 (1236)
T KOG1839|consen 562 EELAEKYPHKLSLLRPELILKFYEHRLLAFIVAVENAAEDYGFDSSNPFKKSDAIGLVPVHKLVNCISADGR---E---- 634 (1236)
T ss_pred hhccccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcchhhccCCccccccccchhhHHHHHHHHHhhccccc---c----
Confidence 455566766676666666777777677777777777667789999999999999999999999888877766 1
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001206 139 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 218 (1124)
Q Consensus 139 yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~n 218 (1124)
-..-..++|.+++.+++......++..+....-++.+ +.++...+++.+|..+-++++++.++.+|.++|+++..|..
T Consensus 635 -S~~~~~~dav~~~~~al~k~~~~~~~~~fnp~~f~s~-~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d 712 (1236)
T KOG1839|consen 635 -SSKLSLDDAVKYATKALVKLVAVCGPYGFNPAGFYSL-AVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGD 712 (1236)
T ss_pred -ccccchHHHHHHHHHHHHHHHhhhcccccCccccccC-ceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccc
Confidence 1223345899998888888777777776665555555 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 001206 219 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 298 (1124)
Q Consensus 219 LA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~ 298 (1124)
++..+++...+.+|+.+-.+++.++...++..++..+..|.+.+.+-...+ +-+.++++.+++...+.++.++..++.
T Consensus 713 ~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~ 790 (1236)
T KOG1839|consen 713 LSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAA 790 (1236)
T ss_pred cceeeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 999999999999999999999999999999999999988888887777666 889999999999999999999998888
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcH
Q 001206 299 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSV 378 (1124)
Q Consensus 299 a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~v 378 (1124)
+ +.|..++.-++. |..+.+..+++++.. +..+ +.+ ..+...++..+....+...
T Consensus 791 S-H~ln~~ls~~~~---av~~~~t~~~~~ka~----~~~~-----------------~~~-~~g~~k~~~S~~s~~~l~~ 844 (1236)
T KOG1839|consen 791 S-HALNCLLSVMEA---AVQKEQTTLEILKAK----DLRT-----------------QDA-AAGTPKPDASISSKGHLSV 844 (1236)
T ss_pred H-HHHHHHhhcccc---cCCCccchHHHHhhh----hhhh-----------------hhh-ccCCCCcccccccccccch
Confidence 8 667766655444 444444444443322 0000 000 0155566667778888888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhhccccccccCCCCCCCCcc-ccCCCCCcc
Q 001206 379 SDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRESSDEETHAPEPESDTDV-NQGSSIPFQ 457 (1124)
Q Consensus 379 aell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~~~~~~~~~~iA~~E~~~E~~eqE~~I~e~~~e~~e-~~~~~~~~~ 457 (1124)
.+++..|..-....+.+....+.+.++........ ++..+... .+++.++..-.-..+. ..+....+
T Consensus 845 s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~--~~~~i~~~~r~~~~e~~~~ks~f~~- 912 (1236)
T KOG1839|consen 845 SDLLKYITADSKNKFTAAHDVKSRETILLKNGKSK---------IAVEKLEK--KKRELQKPARNYDFESSEPKSEFND- 912 (1236)
T ss_pred hHHHHhccccccccccchhhhhHHHHHhhhcccch---------hHHHHHHH--HhhhcchhhhhccccccCCCCCCCc-
Confidence 99998887666656666666666666555333322 22111111 2222222111100000 00111110
Q ss_pred hhhhHHHh-hhccC-----CCcccccccccccCCCCCCccc-cccccCCCCCcccccccccccccccccccccccccccC
Q 001206 458 QQELVVEE-SAVEK-----PNITEEISSAIHEEGDDGWQPV-QRLRSAGSYGRRLKQRRATIGKVHSYQKRNADAVIDYS 530 (1124)
Q Consensus 458 ~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~d~g~~~~-~~~r~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 530 (1124)
...+-. ..++- ++..+....-++.-.+++|+++ ...++.+..+++.+.+.|.++++|.+..+......|+.
T Consensus 913 --~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~ 990 (1236)
T KOG1839|consen 913 --SDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQ 990 (1236)
T ss_pred --ccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchH
Confidence 011100 11111 1112222222445568899875 45899999999999999999999999999999999998
Q ss_pred cccCCCCCCCceecccCcCCCCCCCCCC-CccccCCCcccceeeeeeecccccCCCCCCCCcccccCCCCCCCCCCCCCC
Q 001206 531 SAKSSHHSSRYYLLKKRAVSHGSSADHH-PVTTFHGTKFGRRVVKAVAYRVKSMPSSAKTGTVEASINGSEPSSSPSESR 609 (1124)
Q Consensus 531 ~~~~~~~~~ry~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (1124)
.+++ +..+++..+.|...-.++.+.| ..+.+ -.+|.+|+. .|.
T Consensus 991 ~Ai~--~~~ka~ii~eR~~g~ds~~t~~~y~nla-----------l~~f~~~~~-------------~~a---------- 1034 (1236)
T KOG1839|consen 991 EAIA--QQRKACIISERVLGKDSPNTKLAYGNLA-----------LYEFAVKNL-------------SGA---------- 1034 (1236)
T ss_pred HHHH--hcccceeeechhccCCCHHHHHHhhHHH-----------HHHHhccCc-------------cch----------
Confidence 7765 4568889999998876655422 22211 123333211 010
Q ss_pred CCCCCCCCccccccccccCCCCCcceeeccCCCceeeh-hhccCCC
Q 001206 610 PASAPNDTSSVKNSIISLGKSPSYKEVAVAPPGTIAML-QVRVPQS 654 (1124)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~k~~sykeva~a~pgti~k~-~~~~~~~ 654 (1124)
..+..+. ..++.+||+| ++||+|+++. .++++++
T Consensus 1035 --------l~~~~ra-~~l~~Ls~ge--~hP~~a~~~~nle~l~~~ 1069 (1236)
T KOG1839|consen 1035 --------LKSLNRA-LKLKLLSSGE--DHPPTALSFINLELLLLG 1069 (1236)
T ss_pred --------hhhHHHH-HHhhccccCC--CCCchhhhhhHHHHHHhh
Confidence 1112222 2678889999 8999999988 6667665
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.56 E-value=4.7e-13 Score=154.72 Aligned_cols=243 Identities=12% Similarity=0.042 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
+...+..|..+...|++++|+.+|++++.. ++....++..+|.+|...|++++|+.++++++... ...
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~ 102 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLT 102 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCC
Confidence 445667788899999999999999999976 45667889999999999999999999999887631 111
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
......++..||.+|...|++++|+.+|+++++. .+....++..++.+|...|++++|++++++++....
T Consensus 103 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-- 172 (389)
T PRK11788 103 REQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-- 172 (389)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC--
Confidence 1234567899999999999999999999999863 344567889999999999999999999999876531
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HHHHhHHHHHHHHhccCCC
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY--FESKAFEQQEAARNGTRKP 366 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~--l~~k~~e~aeAl~~~~~~~ 366 (1124)
..........+..+|.++..+|++++|+.+|++++++ .+++.. +...++. ...+..+.+..........
T Consensus 173 -~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 173 -DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA-----DPQCVR---ASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred -CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH-----CcCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112234556778999999999999999999999876 233332 3333333 3334444444333222211
Q ss_pred chhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 367 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 409 (1124)
Q Consensus 367 ~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~ 409 (1124)
. ......++..++.+|...|++++|+.++++++++.
T Consensus 244 ~-------p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 244 D-------PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred C-------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 1 11234667889999999999999999999998864
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.56 E-value=5.9e-13 Score=162.29 Aligned_cols=330 Identities=16% Similarity=0.100 Sum_probs=228.7
Q ss_pred HHHHHHHHHhhcccCCCCCCcchHHhHHhhh----------hh----hhhhcCChHHHHHHHHHHHHHHHcCCHHHHHHH
Q 001206 86 LCHKVGIELVSRDFDMDSPSPFRKIDVVSLV----------PV----HKQAACSSADGRQLLESSKTALDKGKLEDAVTY 151 (1124)
Q Consensus 86 L~~k~GIqL~~rdY~fd~a~~f~~eDI~~L~----------pv----~K~~~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~ 151 (1124)
..++.|+++..+.|......|.....+.+.+ .+ .+........++.+|++|+.|..+|+|++|..|
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 3567788888888877766554444333222 11 233345567788999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------------------------------
Q 001206 152 GTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI------------------------------- 200 (1124)
Q Consensus 152 f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI------------------------------- 200 (1124)
|.+++... .++ ..-.+..||.+|.+.|++..|..+|++.+..
T Consensus 330 Y~~s~k~~-----~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~ 402 (1018)
T KOG2002|consen 330 YMESLKAD-----NDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNV 402 (1018)
T ss_pred HHHHHccC-----CCC--ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHH
Confidence 99998762 111 2445666777777777766666666554432
Q ss_pred ----------------------------------------HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001206 201 ----------------------------------------NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 240 (1124)
Q Consensus 201 ----------------------------------------~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekAL 240 (1124)
++..... --...++|+|..++.+|++.+|..+|.+|+
T Consensus 403 l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 403 LGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 1111000 112456899999999999999999999999
Q ss_pred HHHHHhcCCCC--hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q 001206 241 YLLHLTCGPSH--PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 318 (1124)
Q Consensus 241 ei~ek~~G~dh--p~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle 318 (1124)
..+......+. .....+.+|||.++..+++++.|.+.|...+.. ||....+|..||.+....+...+|..
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--------hp~YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--------HPGYIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------CchhHHHHHHhhHHHHhccCcHHHHH
Confidence 98553332222 123567899999999999999999999998865 57889999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHH--------
Q 001206 319 HEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHD-------- 390 (1124)
Q Consensus 319 ~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~-------- 390 (1124)
+++.++.+ ...++..+.....+..-.++.....+.....-..+... .-.-.+..||.+|.
T Consensus 552 ~lk~~l~~-----d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~-------~D~YsliaLGN~~~~~l~~~~r 619 (1018)
T KOG2002|consen 552 LLKDALNI-----DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK-------TDAYSLIALGNVYIQALHNPSR 619 (1018)
T ss_pred HHHHHHhc-----ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC-------CchhHHHHhhHHHHHHhccccc
Confidence 99999986 45677766666644433332222222111111111100 00112233444442
Q ss_pred ----HcCChHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhhccccccccCCCCCCC
Q 001206 391 ----TKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRESSDEETHAPEPESD 445 (1124)
Q Consensus 391 ----~qGdyeeAl~~yekALkL~~sl~~~~~~~~~~iA~~E~~~E~~eqE~~I~e~~~e 445 (1124)
.++.+++|+..|.++|+...+...+.++.+..+|++....++.+.+.+|+|.+.+
T Consensus 620 n~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~ 678 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD 678 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh
Confidence 3566777888888888888888888899999999999999999999999998863
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.54 E-value=1.1e-12 Score=163.41 Aligned_cols=250 Identities=12% Similarity=-0.001 Sum_probs=175.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH----
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN---- 201 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~---- 201 (1124)
...+..++.+|..+...|++++|+..|++++.+ .|....++..+|.++..+|++++|+..+++++...
T Consensus 107 P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~ 178 (656)
T PRK15174 107 VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG 178 (656)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH
Confidence 344566788899999999999999999999876 45566778888888888888888888777654321
Q ss_pred ----------------------HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 001206 202 ----------------------ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 259 (1124)
Q Consensus 202 ----------------------er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~ 259 (1124)
++.+..+.......+..++.++...|++++|+..|++++.+ +|....+++
T Consensus 179 ~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~ 250 (656)
T PRK15174 179 DMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRR 250 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHH
Confidence 11111111111122344567777888888888888887764 345567888
Q ss_pred HHHHHHHHCCCHHH----HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 001206 260 NVAMMEEGLGNVHV----ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD 335 (1124)
Q Consensus 260 nLA~iy~~lGdyee----Ale~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh 335 (1124)
+||.+|..+|++++ |+.+|++++.+. |....++..+|.++..+|++++|+.++++++++ .+++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~ 317 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDL 317 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC
Confidence 99999999999986 789999988764 345678889999999999999999999999875 4666
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 336 LRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 336 ~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
+.....+. ..+...+.++.+.......... ++.....+..++.++...|++++|+.+|++++++.+...
T Consensus 318 ~~a~~~La-~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 318 PYVRAMYA-RALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHH-HHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 54433222 2233334444444333222111 122234556678899999999999999999999987765
No 17
>PF12807 eIF3_p135: Translation initiation factor eIF3 subunit 135
Probab=99.52 E-value=1.3e-14 Score=151.11 Aligned_cols=101 Identities=29% Similarity=0.546 Sum_probs=87.1
Q ss_pred CchhhHHHHHHHHHhhcCChhhHHHHHHHHHHhhcCCccCCCCCC-------------C----CCccHHHHHHHHHHHHH
Q 001206 1 MIVRAFKHIIQAVISAVGNTQRMAVSIAAALNLMLGVHESDGLNK-------------S----HNVHPLVWRWLELFLMK 63 (1124)
Q Consensus 1 MIaRaaKHIlr~~l~~l~~~~~~a~aIsh~LNcLLG~~~~e~~~~-------------s----~~~~plvw~~I~~~lrk 63 (1124)
||||++|||||.++++++ ...++.+|+||||||||......... . .-....+|++|+.++..
T Consensus 49 miaR~~K~i~r~~l~~~~-~~~~~~~v~~~lN~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~l~~~I~~ev~~ 127 (169)
T PF12807_consen 49 MIARAAKHILREYLRSVP-QSELSSAVSHFLNCLLGSSSNSKPKKEKKEKNSNSKSKSDSSWSKLTPSSLWSEIEKEVKS 127 (169)
T ss_pred HHHHHHHHHHHHHHHccc-hhhHHHHHHHHHHHhhCCCccccccccccchhccccccccchhhhcCcHHHHHHHHHHHHH
Confidence 899999999999999965 68999999999999999875542100 0 11234699999999999
Q ss_pred hhccccccCccc---ccchHHHHHHHHHHHHHHHhhcccCCC
Q 001206 64 RYEWDLNGLNFK---DVRKFAILRGLCHKVGIELVSRDFDMD 102 (1124)
Q Consensus 64 rf~y~L~~~~~~---~l~k~~LLreL~~k~GIqL~~rdY~fd 102 (1124)
+|+|+++..++. .+.++++||++|.++|+|+..|+|.|+
T Consensus 128 rf~y~l~~~~~~~~~~~~~~~LLR~ic~k~GiQl~~r~Y~f~ 169 (169)
T PF12807_consen 128 RFRYELPEDWFDEKYGLQKIQLLREICQKTGIQLLARDYDFT 169 (169)
T ss_pred hcCCcCchHHhhhhccccHHHHHHHHHHHhCeEeeeecCCCC
Confidence 999999999998 899999999999999999999999885
No 18
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.50 E-value=1.7e-12 Score=146.61 Aligned_cols=228 Identities=12% Similarity=0.004 Sum_probs=162.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 001206 143 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 222 (1124)
Q Consensus 143 GdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~i 222 (1124)
+..+.++..+.+++.... .+....+..|+.+|.+|...|++++|+..|++++.+ .|+...+|+++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~ 107 (296)
T PRK11189 40 LQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIY 107 (296)
T ss_pred hHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHH
Confidence 456778888888775421 234456889999999999999999999999999986 45667899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 001206 223 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHA 302 (1124)
Q Consensus 223 y~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~n 302 (1124)
|..+|++++|+..|++++++ .|....++.++|.++...|++++|++.|++++++. ++++.. ..+
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-----P~~~~~-~~~-- 171 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-----PNDPYR-ALW-- 171 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHH-HHH--
Confidence 99999999999999999986 45557789999999999999999999999999864 444421 112
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHH
Q 001206 303 IAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLL 382 (1124)
Q Consensus 303 LA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell 382 (1124)
..++...+++++|+..+.+++... .++.... .+..+..+....++++........... ...+...++|
T Consensus 172 -~~l~~~~~~~~~A~~~l~~~~~~~----~~~~~~~-----~~~~~~lg~~~~~~~~~~~~~~~~~~~--~l~~~~~ea~ 239 (296)
T PRK11189 172 -LYLAESKLDPKQAKENLKQRYEKL----DKEQWGW-----NIVEFYLGKISEETLMERLKAGATDNT--ELAERLCETY 239 (296)
T ss_pred -HHHHHccCCHHHHHHHHHHHHhhC----CccccHH-----HHHHHHccCCCHHHHHHHHHhcCCCcH--HHHHHHHHHH
Confidence 223456789999999997765331 2222111 122222222222222211111111000 0112356789
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 001206 383 DYINPSHDTKGRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 383 ~~Lg~~y~~qGdyeeAl~~yekALkL~~ 410 (1124)
.++|.++..+|++++|+.+|++++++..
T Consensus 240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 240 FYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999998764
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.49 E-value=3.9e-12 Score=159.16 Aligned_cols=175 Identities=21% Similarity=0.205 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI------- 200 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI------- 200 (1124)
....++..|..++.+|++++|+..|.+++.+ +|....+++.+|.+|..+|++++|+.++++++..
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 92 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQK--------DPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQV 92 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhh
Confidence 4567888999999999999999999999976 5667789999999999999999999999988753
Q ss_pred --------------------HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001206 201 --------------------NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 260 (1124)
Q Consensus 201 --------------------~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~n 260 (1124)
+.+......+....++..+|.+|...|++++|+.+|++++.. +|....++..
T Consensus 93 ~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~ 164 (899)
T TIGR02917 93 LPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI--------DPRSLYAKLG 164 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHH
Confidence 111112234556678888999999999999999999998874 2334567788
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 261 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 261 LA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
+|.++...|++++|+.++++++... +.....+..+|.++...|++++|+..|++++.+
T Consensus 165 la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 222 (899)
T TIGR02917 165 LAQLALAENRFDEARALIDEVLTAD--------PGNVDALLLKGDLLLSLGNIELALAAYRKAIAL 222 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 8888999999999999988887653 223456777888888888888888888888764
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.49 E-value=2.9e-12 Score=159.55 Aligned_cols=246 Identities=12% Similarity=0.034 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
.....++.+|..++..|++++|+..|++++.+ +|....++..+|.++..+|++++|+..|++++.+
T Consensus 74 ~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l------ 139 (656)
T PRK15174 74 NGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA------ 139 (656)
T ss_pred CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 34667888888999999999999999999987 5677789999999999999999999999999987
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------------------HHhcCCCChhHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL--------------------------HLTCGPSHPNTAATYIN 260 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~--------------------------ek~~G~dhp~~a~al~n 260 (1124)
.|+...++..+|.++...|++++|+.++++++... +................
T Consensus 140 --~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~ 217 (656)
T PRK15174 140 --FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGL 217 (656)
T ss_pred --CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 34456678888889999999999988888765421 00000000011112234
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHH----HHHHHHHHHHHHHHhcCCCCH
Q 001206 261 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL----SVQHEQTTLQILRAKLGPDDL 336 (1124)
Q Consensus 261 LA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~ee----Ale~lekALei~~k~lG~dh~ 336 (1124)
++.++..+|++++|+..|++++... +....+++.||.+|..+|++++ |+.+|++++++ .+++.
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~~ 284 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARG--------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSDNV 284 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCCH
Confidence 5666777777777777777777642 3345677889999999999986 78888888875 35555
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 001206 337 RTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 337 ~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~ 410 (1124)
.....+..+ +...+.++.+......... ..+....++..+|.+|..+|++++|+..|+++++...
T Consensus 285 ~a~~~lg~~-l~~~g~~~eA~~~l~~al~--------l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 285 RIVTLYADA-LIRTGQNEKAIPLLQQSLA--------THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HHHHHHHHH-HHHCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 443333322 2223333333333222211 1233446788899999999999999999999887644
No 21
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.48 E-value=2.6e-12 Score=136.74 Aligned_cols=170 Identities=20% Similarity=0.159 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~l 205 (1124)
...+.+.+++|.-|+.+|++..|...+++||++ +|....++..+|.+|..+|+.+.|.+.|++|+.+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----- 98 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence 345778899999999999999999999999987 7888899999999999999999999999999998
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 206 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
+|....+++|.|.+++.+|++++|..+|++|+. .+.-+....++.|+|.|..++|+++.|.++|+++|++.
T Consensus 99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 566788999999999999999999999999997 35566678899999999999999999999999999986
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 286 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 325 (1124)
Q Consensus 286 ~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALe 325 (1124)
+........++..+...|+|..|..++++-..
T Consensus 170 --------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 170 --------PQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred --------cCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 33345667789999999999999998875543
No 22
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.48 E-value=7e-12 Score=165.38 Aligned_cols=181 Identities=16% Similarity=0.033 Sum_probs=139.5
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCch-----------hHHHHHHHHHHHHhcCCHHHHHHH
Q 001206 125 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM-----------TAGAYSLLAVVLYHTGDFNQATIY 193 (1124)
Q Consensus 125 ~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~-----------~A~ay~nLG~ly~~lGdydeAle~ 193 (1124)
...+...++.+|.+++.+|++++|+.+|++++++. +++.. ....+..+|.++...|++++|+.+
T Consensus 299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34456788999999999999999999999999763 22211 112334568899999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------hcCCCChh----------
Q 001206 194 QQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL----------TCGPSHPN---------- 253 (1124)
Q Consensus 194 ~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek----------~~G~dhp~---------- 253 (1124)
|++++.+ +|....++..||.+|..+|++++|+++|++++++.-. ++....+.
T Consensus 374 ~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 374 YQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLS 445 (1157)
T ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 9999987 3445678899999999999999999999999974210 00000000
Q ss_pred --------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Q 001206 254 --------------TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 319 (1124)
Q Consensus 254 --------------~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~ 319 (1124)
....+..+|.++...|++++|+.+|++++++. ++ ...+++.+|.+|..+|++++|+..
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-----P~---~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-----PG---SVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 01234567888889999999999999999874 33 346788999999999999999999
Q ss_pred HHHHHHH
Q 001206 320 EQTTLQI 326 (1124)
Q Consensus 320 lekALei 326 (1124)
+++++++
T Consensus 518 l~~al~~ 524 (1157)
T PRK11447 518 MRRLAQQ 524 (1157)
T ss_pred HHHHHHc
Confidence 9998864
No 23
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.6e-12 Score=144.75 Aligned_cols=189 Identities=20% Similarity=0.216 Sum_probs=163.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001206 136 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 215 (1124)
Q Consensus 136 G~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~a 215 (1124)
|..|..+++.++|+.||++||++ ++....+|..+|.-|..+.+...|++.|++|+++. |...++
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--------p~DyRA 400 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--------PRDYRA 400 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--------chhHHH
Confidence 66777888999999999999988 77888999999999999999999999999999984 556789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 001206 216 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 295 (1124)
Q Consensus 216 y~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~ 295 (1124)
++.||.+|.-++...=|+-||++|+++ .|.....+..||.||.++++.++|+++|.+|+.....
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-------- 464 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-------- 464 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc--------
Confidence 999999999999999999999999985 3445677888999999999999999999999987421
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHH
Q 001206 296 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQE 357 (1124)
Q Consensus 296 ~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~ae 357 (1124)
...++..||.+|..+++..+|..+|++.++.. ..-|...+.+..+..||+....+.....+
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~ 525 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDE 525 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHH
Confidence 34678999999999999999999999999976 45577888899999999865554444433
No 24
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.46 E-value=3.8e-12 Score=167.82 Aligned_cols=240 Identities=14% Similarity=0.086 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 210 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p 210 (1124)
.+..+|..+...|++++|+.+|++++++ +|....+++.||.+|..+|++++|+..+++++.+ +|
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--------~P 526 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--------KP 526 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CC
Confidence 4556788999999999999999999987 4566778999999999999999999999999875 23
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------------------------HHHHHhcCCCChh
Q 001206 211 DTMKSYGDLAVFYYRLQHTELALKYVKRAL-------------------------------------YLLHLTCGPSHPN 253 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lGdyeeAley~ekAL-------------------------------------ei~ek~~G~dhp~ 253 (1124)
.....++.+|.++...+++++|+.+++++. .+++ .+|.
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-----~~p~ 601 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-----QQPP 601 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-----hCCC
Confidence 344556677777778888888887776531 1111 1333
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 001206 254 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 333 (1124)
Q Consensus 254 ~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~ 333 (1124)
....+..||.+|..+|++++|+.+|++++++. + ....++..+|.+|..+|++++|+.+++++++. .+
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-----P---~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-----~p 668 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTRE-----P---GNADARLGLIEVDIAQGDLAAARAQLAKLPAT-----AN 668 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----CC
Confidence 44567889999999999999999999999864 3 34577889999999999999999999977654 34
Q ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 334 DDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 407 (1124)
Q Consensus 334 dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALk 407 (1124)
++......+.+ .+...+..+.+............. .......+.++..++.++..+|++++|+.+|++++.
T Consensus 669 ~~~~~~~~la~-~~~~~g~~~eA~~~~~~al~~~~~--~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 669 DSLNTQRRVAL-AWAALGDTAAAQRTFNRLIPQAKS--QPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CChHHHHHHHH-HHHhCCCHHHHHHHHHHHhhhCcc--CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55554433333 233344455554444332221100 000112345677889999999999999999999975
No 25
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.44 E-value=1.7e-11 Score=153.45 Aligned_cols=244 Identities=19% Similarity=0.195 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
....+..+|.++...|++++|+.+|++++.+ .+....++..+|.++...|++++|+.+|++++...
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------ 529 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSI--------EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID------ 529 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------
Confidence 3456777788888888888888888888765 34445567777777777777777777777776541
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------------------------HhcCCCChhHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH---------------------------LTCGPSHPNTAATYIN 260 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~e---------------------------k~~G~dhp~~a~al~n 260 (1124)
|....++..++.++...|++++|+.+|++++.... ... ...+....++..
T Consensus 530 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~ 606 (899)
T TIGR02917 530 --PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA-DAAPDSPEAWLM 606 (899)
T ss_pred --cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCHHHHHH
Confidence 22334455555555555555555555555443200 000 012223345666
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 001206 261 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQD 340 (1124)
Q Consensus 261 LA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~ 340 (1124)
+|.+|...|++++|+.+|+++++.. + .....+..+|.+|...|++++|+.+|++++++ .+++.....
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~-----~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~ 673 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQ-----P---DSALALLLLADAYAVMKNYAKAITSLKRALEL-----KPDNTEAQI 673 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-----C---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHH
Confidence 6777777777777777776666542 1 22345666777777777777777777766654 234333322
Q ss_pred HHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 001206 341 AAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 341 a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~ 410 (1124)
.+..+ +...+..+.+..+..... ...+.....+..+|.++...|++++|+.+|+++++...
T Consensus 674 ~l~~~-~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 734 (899)
T TIGR02917 674 GLAQL-LLAAKRTESAKKIAKSLQ--------KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734 (899)
T ss_pred HHHHH-HHHcCCHHHHHHHHHHHH--------hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Confidence 22211 122223333332222111 11123345677889999999999999999999887654
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1.1e-12 Score=155.49 Aligned_cols=235 Identities=17% Similarity=0.134 Sum_probs=170.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH----------HH--
Q 001206 136 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN----------ER-- 203 (1124)
Q Consensus 136 G~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~----------er-- 203 (1124)
|.....+-+..+|+..|.+ +- ..+..+..++..+|..|+.+++|++|..+|+.+-.+. -.
T Consensus 326 ~~~~~s~y~~~~A~~~~~k-lp-------~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L 397 (638)
T KOG1126|consen 326 GYRSLSQYNCREALNLFEK-LP-------SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHHHHHHHHHh-hH-------HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence 3344455566677777776 32 2356777899999999999999999999998864431 11
Q ss_pred --------------hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC
Q 001206 204 --------------ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG 269 (1124)
Q Consensus 204 --------------~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lG 269 (1124)
.+-...++-..+|..+|+||..+++++.|+++|++|+.+ +|..+.+|..+|.=+..+.
T Consensus 398 WHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~e 469 (638)
T KOG1126|consen 398 WHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATE 469 (638)
T ss_pred HHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhH
Confidence 011123444567899999999999999999999999986 5667888999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 001206 270 NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE 349 (1124)
Q Consensus 270 dyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~ 349 (1124)
.||+|..+|++||.+. +....+|+.||.+|.++++++.|+-+|++|++| .+. ....+..++.+.
T Consensus 470 e~d~a~~~fr~Al~~~--------~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-----NP~---nsvi~~~~g~~~ 533 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVD--------PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-----NPS---NSVILCHIGRIQ 533 (638)
T ss_pred HHHhHHHHHHhhhcCC--------chhhHHHHhhhhheeccchhhHHHHHHHhhhcC-----Ccc---chhHHhhhhHHH
Confidence 9999999999999875 445689999999999999999999999999987 233 333333333333
Q ss_pred --HHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 001206 350 --SKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 350 --~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~ 410 (1124)
.+..+++..+...+...+... .-..+.-+.++...++|.+|+.-+++..++..
T Consensus 534 ~~~k~~d~AL~~~~~A~~ld~kn--------~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 534 HQLKRKDKALQLYEKAIHLDPKN--------PLCKYHRASILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HHhhhhhHHHHHHHHHHhcCCCC--------chhHHHHHHHHHhhcchHHHHHHHHHHHHhCc
Confidence 333334333333333333111 12345667888899999999999988776644
No 27
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=5.4e-12 Score=144.81 Aligned_cols=247 Identities=15% Similarity=0.068 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
..++++...|..++-.|++..|...|.+++.+ ++.....|..+|.+|..+.+-.+...+|.+|..+
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l------ 389 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL------ 389 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc------
Confidence 44788999999999999999999999999987 4444556999999999999999999999999887
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
+|.....|+..|.+++-+++|++|+.-|++|+.+ .|..+..+..++.+.+++++++++...|+++...+
T Consensus 390 --dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF- 458 (606)
T KOG0547|consen 390 --DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF- 458 (606)
T ss_pred --CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 4555668999999999999999999999999986 57778999999999999999999999999998876
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhHHHHHHHHhccCC
Q 001206 287 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD-DLRTQDAAAWLEYFESKAFEQQEAARNGTRK 365 (1124)
Q Consensus 287 k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~d-h~~t~~a~~~La~l~~k~~e~aeAl~~~~~~ 365 (1124)
|....+|...|.++.++++|+.|++.|.+|+++-...-+-. ....+.-...+.....+.+.++..+......
T Consensus 459 -------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 459 -------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE 531 (606)
T ss_pred -------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc
Confidence 45567888899999999999999999999998854311110 1111111111111122445555555444444
Q ss_pred CchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 366 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 366 ~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
.+ +.-...+..||.+...+|+.++|+++|++++.+.++..
T Consensus 532 ~D--------pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~ 571 (606)
T KOG0547|consen 532 LD--------PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTES 571 (606)
T ss_pred cC--------chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Confidence 33 23446788999999999999999999999999987644
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.41 E-value=1.2e-11 Score=158.63 Aligned_cols=234 Identities=16% Similarity=0.028 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..++.+|.++.. +++++|+..|.+++... |.. .....+|.++...|++++|+.+|++++.. .
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--------Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~------~ 539 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--------PDA-WQHRAVAYQAYQVEDYATALAAWQKISLH------D 539 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--------Cch-HHHHHHHHHHHHCCCHHHHHHHHHHHhcc------C
Confidence 56788999988887 89999999999998762 221 23666777888999999999999997543 1
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
.. ...+.++|.++...|++++|+.+|++++.+ .|.....+..++..+..+|++++|+.+|++++++.
T Consensus 540 p~---~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-- 606 (987)
T PRK09782 540 MS---NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-- 606 (987)
T ss_pred CC---cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--
Confidence 11 234678899999999999999999999874 23344556667777778899999999999999874
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--hHHHHHHHHhccCC
Q 001206 288 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK--AFEQQEAARNGTRK 365 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k--~~e~aeAl~~~~~~ 365 (1124)
|. ...+.++|.++.++|++++|+.+|++++.+ .+++... ...++.+... ..+.+.........
T Consensus 607 ------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~~a---~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 607 ------PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----EPNNSNY---QAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred ------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23 567899999999999999999999999987 5666643 3444433333 33333333222221
Q ss_pred CchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 366 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 366 ~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
..+....++..+|.++..+|++++|+.+|++++++.+...
T Consensus 672 --------l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 672 --------GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred --------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 2234557899999999999999999999999999886544
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=3.1e-11 Score=126.20 Aligned_cols=206 Identities=20% Similarity=0.183 Sum_probs=152.8
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
....+..+.++|.+|...|++++|+.++++++.. +|....++..+|.+|..+|++++|+++|++++.+
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---- 94 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL---- 94 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Confidence 3456788999999999999999999999999875 3455678899999999999999999999999985
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 247 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 247 ~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
.+.....+.++|.+|..+|++++|+.+|++++... ..+.....+..+|.+|...|++++|..+++++++.
T Consensus 95 ----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 95 ----NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred ----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23334678899999999999999999999998742 22334567888999999999999999999999876
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001206 327 LRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 406 (1124)
Q Consensus 327 ~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekAL 406 (1124)
.+++......+..+ +...+.++.+.......... .+.....+..++.++...|+.++|..+.+...
T Consensus 165 -----~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 165 -----DPQRPESLLELAEL-YYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred -----CcCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444333222222 22333344433332211111 01223556678888889999999988887765
Q ss_pred HH
Q 001206 407 KV 408 (1124)
Q Consensus 407 kL 408 (1124)
++
T Consensus 231 ~~ 232 (234)
T TIGR02521 231 KL 232 (234)
T ss_pred hh
Confidence 54
No 30
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=2e-11 Score=149.43 Aligned_cols=235 Identities=12% Similarity=0.033 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhc---------CCHHHHHHHH
Q 001206 127 ADGRQLLESSKTALDK---GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---------GDFNQATIYQ 194 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~q---GdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~l---------GdydeAle~~ 194 (1124)
.++..++..|..++.. +++++|+.+|++|+++ +|..+.+|..||.+|..+ +++++|+.++
T Consensus 256 ~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~ 327 (553)
T PRK12370 256 IDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHA 327 (553)
T ss_pred hHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 3445566667655543 4578999999999876 677788899999887644 3488999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 001206 195 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA 274 (1124)
Q Consensus 195 ~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeA 274 (1124)
++|+++ .|+...++..+|.++...|++++|+.+|++|+++ .|....+++++|.+|..+|++++|
T Consensus 328 ~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 328 IKATEL--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEA 391 (553)
T ss_pred HHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 999887 3556778999999999999999999999999986 455567889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHh
Q 001206 275 LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKA 352 (1124)
Q Consensus 275 le~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La--~l~~k~ 352 (1124)
+.+|++++++. +.++ ..++.++.++..+|++++|+.++++++... .++++.. ...++ +...+.
T Consensus 392 i~~~~~Al~l~-----P~~~---~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~----~p~~~~~---~~~la~~l~~~G~ 456 (553)
T PRK12370 392 LQTINECLKLD-----PTRA---AAGITKLWITYYHTGIDDAIRLGDELRSQH----LQDNPIL---LSMQVMFLSLKGK 456 (553)
T ss_pred HHHHHHHHhcC-----CCCh---hhHHHHHHHHHhccCHHHHHHHHHHHHHhc----cccCHHH---HHHHHHHHHhCCC
Confidence 99999999875 3332 334445666778999999999998877541 2344432 23333 333444
Q ss_pred HHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 001206 353 FEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 353 ~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~ 410 (1124)
.+.+.+........ .+.-......++..|...|+ +|...+++.++...
T Consensus 457 ~~eA~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~ 504 (553)
T PRK12370 457 HELARKLTKEISTQ--------EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHHHHhhhc--------cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh
Confidence 45554443322111 11233456677777777774 67777777555444
No 31
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.39 E-value=4.2e-11 Score=129.60 Aligned_cols=179 Identities=18% Similarity=0.225 Sum_probs=148.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~l 205 (1124)
...+..++.+|..++..|++++|+..|++++... +.++....+++.+|.+|..+|++++|+..|++++...
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~---- 100 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH---- 100 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC----
Confidence 3446788999999999999999999999998763 4556667789999999999999999999999999874
Q ss_pred CCCChhHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCChhHH--------------HHHHHHHH
Q 001206 206 GLDHPDTMKSYGDLAVFYYRL--------QHTELALKYVKRALYLLHLTCGPSHPNTA--------------ATYINVAM 263 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~l--------GdyeeAley~ekALei~ek~~G~dhp~~a--------------~al~nLA~ 263 (1124)
++++....+++.+|.++... |++++|++.|++++... +++.... .....+|.
T Consensus 101 -p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a~ 174 (235)
T TIGR03302 101 -PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVAR 174 (235)
T ss_pred -cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667889999999887 88999999999998752 2222221 12247899
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001206 264 MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 324 (1124)
Q Consensus 264 iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekAL 324 (1124)
+|..+|++.+|+..|++++..+ ++++....+++.+|.+|..+|++++|..+++...
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999876 4556778899999999999999999999877543
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=3.9e-11 Score=146.83 Aligned_cols=170 Identities=15% Similarity=0.058 Sum_probs=135.6
Q ss_pred ChHHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001206 125 SSADGRQLLESSKTALD---------KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQ 195 (1124)
Q Consensus 125 ~s~~Ar~Ll~lG~~yl~---------qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~ 195 (1124)
....+..+..+|.++.. .+++++|+.++++++++ +|....++..+|.++..+|++++|+.+|+
T Consensus 291 dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~ 362 (553)
T PRK12370 291 SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQALGLLGLINTIHSEYIVGSLLFK 362 (553)
T ss_pred CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 33445556666665543 34589999999999987 66778899999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 001206 196 KALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVAL 275 (1124)
Q Consensus 196 KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAl 275 (1124)
+|+.+ .|+...+++++|.+|..+|++++|+.+|++++++ .|.....+..++.++...|++++|+
T Consensus 363 ~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--------~P~~~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 363 QANLL--------SPISADIKYYYGWNLFMAGQLEEALQTINECLKL--------DPTRAAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred HHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHhccCHHHHH
Confidence 99987 3556778999999999999999999999999986 2332334445666778899999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 276 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 325 (1124)
Q Consensus 276 e~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALe 325 (1124)
.++++++... .+.....+..+|.+|..+|++++|..++++...
T Consensus 427 ~~~~~~l~~~-------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 427 RLGDELRSQH-------LQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHHHHhc-------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 9999987643 123345678899999999999999999877543
No 33
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.38 E-value=2e-10 Score=129.97 Aligned_cols=175 Identities=18% Similarity=0.110 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
..+..++.+|.++...|++++|+..|++++++ +|....+|+++|.+|..+|++++|+..|++++++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------ 127 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL------ 127 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 44778999999999999999999999999987 5677889999999999999999999999999987
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
.|+...++.++|.+++..|++++|++.|++++++ .++++.. ..+ ..++...+++++|+..|.+++....
T Consensus 128 --~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~-~~~---~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 128 --DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYR-ALW---LYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH-HHH---HHHHHccCCHHHHHHHHHHHHhhCC
Confidence 3556778999999999999999999999999985 2334321 111 1234456778888888866543210
Q ss_pred ----------HhcCCC-------------------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 287 ----------RLLGPD-------------------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 287 ----------k~lG~d-------------------~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
-.+|.. .+....+|++||.+|..+|++++|+.+|++|+++
T Consensus 197 ~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 197 KEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred ccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 011111 1123467999999999999999999999999976
No 34
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.37 E-value=5e-11 Score=127.02 Aligned_cols=208 Identities=17% Similarity=0.171 Sum_probs=160.6
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 168 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 247 (1124)
Q Consensus 168 p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~ 247 (1124)
...+.+...||.-|+..|++..|...+++||++ +|....++.-+|.+|..+|+.+.|.+.|++|+.+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----- 98 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence 356778899999999999999999999999997 5777889999999999999999999999999985
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 248 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 248 G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
+|....+++|.|..++.+|+|++|..+|++|+.. +.......++.|+|.|..++|+++.|..+|++++++
T Consensus 99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~- 168 (250)
T COG3063 99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL- 168 (250)
T ss_pred ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-
Confidence 6777899999999999999999999999999874 555667789999999999999999999999999987
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 328 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 407 (1124)
Q Consensus 328 ~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALk 407 (1124)
.++.+.....+..+.+... .+-.+..+...... ... ..++.+.....+....|+-+.|..|=.+..+
T Consensus 169 ----dp~~~~~~l~~a~~~~~~~-~y~~Ar~~~~~~~~-------~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 169 ----DPQFPPALLELARLHYKAG-DYAPARLYLERYQQ-------RGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred ----CcCCChHHHHHHHHHHhcc-cchHHHHHHHHHHh-------ccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4555554444444433322 22222222111100 001 2234555666777888999988887766666
Q ss_pred HHhh
Q 001206 408 VKGN 411 (1124)
Q Consensus 408 L~~s 411 (1124)
.++.
T Consensus 236 ~fP~ 239 (250)
T COG3063 236 LFPY 239 (250)
T ss_pred hCCC
Confidence 5554
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.35 E-value=6.5e-11 Score=152.12 Aligned_cols=233 Identities=15% Similarity=0.003 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 210 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p 210 (1124)
..+.+|..+...|++++|+.+|++++.. .+. ...+..+|.++...|++++|+.+|++++.+ .|
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P 573 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GL 573 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CC
Confidence 3556677778999999999999987543 111 234678899999999999999999999875 23
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 001206 211 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 290 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG 290 (1124)
.....+..++..+..+|++++|+.+|++++++ .|. ...+.++|.++..+|++++|+.+|++++.+.
T Consensus 574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~----- 639 (987)
T PRK09782 574 GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELE----- 639 (987)
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence 34555666777777889999999999999985 344 6788999999999999999999999999875
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhh
Q 001206 291 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASI 370 (1124)
Q Consensus 291 ~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~ 370 (1124)
|....++.++|.++..+|++++|+.+|++++++ .++++.....+.++ +...+.++.+...........
T Consensus 640 ---Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-----~P~~~~a~~nLA~a-l~~lGd~~eA~~~l~~Al~l~--- 707 (987)
T PRK09782 640 ---PNNSNYQAALGYALWDSGDIAQSREMLERAHKG-----LPDDPALIRQLAYV-NQRLDDMAATQHYARLVIDDI--- 707 (987)
T ss_pred ---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcC---
Confidence 344578999999999999999999999999986 46776554444433 334444555554444333322
Q ss_pred hhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 371 ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 371 a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
+..+.+...+|.+...+.++..|.+.|.++..+...
T Consensus 708 -----P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 708 -----DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred -----CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 234456667777777777777777777776665444
No 36
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.6e-11 Score=143.20 Aligned_cols=218 Identities=18% Similarity=0.173 Sum_probs=180.0
Q ss_pred hhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001206 121 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 200 (1124)
Q Consensus 121 ~~~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI 200 (1124)
-+......+-.++..|-.|+..|++.+|.++|.+|-.+ ++..+.+|..+|..|...|+-++|+..|..|-++
T Consensus 304 LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 304 LVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL 375 (611)
T ss_pred HHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence 33445555667888899999999999999999999876 6788899999999999999999999999999887
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001206 201 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 280 (1124)
Q Consensus 201 ~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lek 280 (1124)
.. |... -+..||.-|.+.++++.|.++|.+|+.|+ |...-.+..+|.+.+..+.|.+|..+|+.
T Consensus 376 ~~---G~hl-----P~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~ 439 (611)
T KOG1173|consen 376 MP---GCHL-----PSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQK 439 (611)
T ss_pred cc---CCcc-----hHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHH
Confidence 53 2222 24558999999999999999999999973 44456788999999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001206 281 ALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR 360 (1124)
Q Consensus 281 ALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~ 360 (1124)
++...+..+ ...+.+.-++.+||.+|.+++.+++|+.+|++++.+. +.+
T Consensus 440 ~l~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-----~k~------------------------- 488 (611)
T KOG1173|consen 440 ALEVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-----PKD------------------------- 488 (611)
T ss_pred HHHHhhhcc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-----CCc-------------------------
Confidence 997775554 3334567789999999999999999999999998762 221
Q ss_pred hccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 361 NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 361 ~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
.+++..+|-+|..+|+++.|+.+|.+||.+.+.
T Consensus 489 ------------------~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 489 ------------------ASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred ------------------hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 245667888888899999999999999887664
No 37
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.33 E-value=5.2e-10 Score=143.89 Aligned_cols=273 Identities=12% Similarity=0.000 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
+.....+|..+...|++++|..++++++.... .........++..+|.++...|++++|..++++++.+.+.. +.
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g~- 526 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-DV- 526 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-cc-
Confidence 44445567888899999999999999987521 11122245677889999999999999999999999988763 32
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
......++.++|.++..+|++++|..++++++.+.....+...+....++..+|.++..+|++++|..++++++.+....
T Consensus 527 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 606 (903)
T PRK04841 527 YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY 606 (903)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence 23345678999999999999999999999999998876544445455667789999999999999999999999987543
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH---------------------------
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA--------------------------- 341 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a--------------------------- 341 (1124)
. ......++..+|.++...|++++|..++.++..+.... + .+......
T Consensus 607 ~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 681 (903)
T PRK04841 607 Q---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG-R-YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK 681 (903)
T ss_pred C---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-c-ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC
Confidence 2 22345677889999999999999999999998875432 1 11100000
Q ss_pred ------------HHHHH--HHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 342 ------------AAWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 407 (1124)
Q Consensus 342 ------------~~~La--~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALk 407 (1124)
...++ +...+.+..+........ ..............++..+|.++..+|++++|..++.++++
T Consensus 682 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al--~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 682 PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELN--ENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00111 111111212111111111 11111111223456777889999999999999999999999
Q ss_pred HHhhhc
Q 001206 408 VKGNFY 413 (1124)
Q Consensus 408 L~~sl~ 413 (1124)
+....+
T Consensus 760 la~~~g 765 (903)
T PRK04841 760 LANRTG 765 (903)
T ss_pred HhCccc
Confidence 887655
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=8.9e-11 Score=134.38 Aligned_cols=244 Identities=13% Similarity=0.143 Sum_probs=174.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH----------HHhc----------------CCCCchhHHHHHHHHHHHHhcCC
Q 001206 133 LESSKTALDKGKLEDAVTYGTKALAKL----------VAVC----------------GPYHRMTAGAYSLLAVVLYHTGD 186 (1124)
Q Consensus 133 l~lG~~yl~qGdyeeAl~~f~kAL~i~----------e~i~----------------G~d~p~~A~ay~nLG~ly~~lGd 186 (1124)
...|.+.+.+.++++|+..|+..++-- ..++ -.-+.....+..-+|.-|...++
T Consensus 266 ~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~e 345 (559)
T KOG1155|consen 266 TQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSE 345 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHh
Confidence 345677888999999999998876530 0000 00011111222335666677788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 001206 187 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 266 (1124)
Q Consensus 187 ydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~ 266 (1124)
.++|+.||++||.+ +|....++..+|.=|..+.+...|++.|++|+++ .|..-.+++.||.+|.
T Consensus 346 HEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 346 HEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------NPRDYRAWYGLGQAYE 409 (559)
T ss_pred HHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------CchhHHHHhhhhHHHH
Confidence 89999999999987 5667889999999999999999999999999997 4666789999999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 001206 267 GLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 346 (1124)
Q Consensus 267 ~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La 346 (1124)
-++-..=|+-||++|+.+. |...+.|..||.+|.++++.++|+.+|++|+.. |.. ...++..|+
T Consensus 410 im~Mh~YaLyYfqkA~~~k--------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-----~dt---e~~~l~~La 473 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELK--------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-----GDT---EGSALVRLA 473 (559)
T ss_pred HhcchHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----ccc---chHHHHHHH
Confidence 9999999999999999875 334578889999999999999999999999875 222 123445555
Q ss_pred HHHHHhHHHHHHHHhccCCCchh-hhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 347 YFESKAFEQQEAARNGTRKPDAS-IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 408 (1124)
Q Consensus 347 ~l~~k~~e~aeAl~~~~~~~~~~-~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL 408 (1124)
.+..+..+..++......-.... ..+.-......+..+|+..+.+.+++++|..|..+++..
T Consensus 474 kLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 55444444433332211111110 111112234456667999999999999999988776554
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=1.6e-10 Score=130.90 Aligned_cols=230 Identities=15% Similarity=0.113 Sum_probs=171.3
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 133 LESSKTALDK--GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 210 (1124)
Q Consensus 133 l~lG~~yl~q--GdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p 210 (1124)
.++..+++.+ .+|.+|..|...|+.+ +...+.++.+.|.+.+..|++++|.++|+.||.- +.
T Consensus 458 ~nl~~l~flqggk~~~~aqqyad~aln~--------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n--------da 521 (840)
T KOG2003|consen 458 NNLCALRFLQGGKDFADAQQYADIALNI--------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN--------DA 521 (840)
T ss_pred hhhHHHHHHhcccchhHHHHHHHHHhcc--------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC--------ch
Confidence 3444444443 3688888888888876 5567788899999999999999999999998752 34
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 001206 211 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 290 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG 290 (1124)
....+++|+|..+..+|++++|+++|-+.-.|+.. .+..++.+|.+|..+.+..+|+++|-++..+.
T Consensus 522 sc~ealfniglt~e~~~~ldeald~f~klh~il~n--------n~evl~qianiye~led~aqaie~~~q~~sli----- 588 (840)
T KOG2003|consen 522 SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN--------NAEVLVQIANIYELLEDPAQAIELLMQANSLI----- 588 (840)
T ss_pred HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC-----
Confidence 56788999999999999999999999988777543 47788999999999999999999999887665
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HHHHhHHHHHHHHhccCCCch
Q 001206 291 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY--FESKAFEQQEAARNGTRKPDA 368 (1124)
Q Consensus 291 ~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~--l~~k~~e~aeAl~~~~~~~~~ 368 (1124)
++.| .++..||.+|-+.|+-.+|.+++-..++.| |-.+....||+. +..+-.+.+-.+.....
T Consensus 589 p~dp---~ilskl~dlydqegdksqafq~~ydsyryf--------p~nie~iewl~ayyidtqf~ekai~y~ekaa---- 653 (840)
T KOG2003|consen 589 PNDP---AILSKLADLYDQEGDKSQAFQCHYDSYRYF--------PCNIETIEWLAAYYIDTQFSEKAINYFEKAA---- 653 (840)
T ss_pred CCCH---HHHHHHHHHhhcccchhhhhhhhhhccccc--------CcchHHHHHHHHHHHhhHHHHHHHHHHHHHH----
Confidence 4444 567789999999999999999887777654 334456677763 23223333222222111
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 001206 369 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 369 ~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~ 410 (1124)
--.+.+...-..++.|+++.|+|..|+..|+..-+-+.
T Consensus 654 ----liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 654 ----LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred ----hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 12234555666789999999999999999987654433
No 40
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=1.1e-10 Score=136.92 Aligned_cols=213 Identities=14% Similarity=0.114 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 210 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p 210 (1124)
.-|..|..++..|++.+|.-+|+.|+.. +|..+.+|..||.+....++-..|+..+++|+++ +|
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP 350 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DP 350 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CC
Confidence 3467788999999999999999999865 7899999999999999999999999999999997 57
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HH------hcC----CC------------------Ch--hHH
Q 001206 211 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLL-----HL------TCG----PS------------------HP--NTA 255 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lGdyeeAley~ekALei~-----ek------~~G----~d------------------hp--~~a 255 (1124)
....++..||..|...|.-.+|++++++-+..- .. ..+ .. ++ ...
T Consensus 351 ~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dp 430 (579)
T KOG1125|consen 351 TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDP 430 (579)
T ss_pred ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCh
Confidence 778999999999999999999999999876521 00 000 00 11 123
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 001206 256 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD 335 (1124)
Q Consensus 256 ~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh 335 (1124)
.++..||.+|...|+|++|+++|+.||... |.....|..||..+..-.+..+|+..|++|+++. +
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~--------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-----P-- 495 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVK--------PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-----P-- 495 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcC--------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-----C--
Confidence 455666777777777777777777776542 4455667777777777777777777777776652 2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhccC
Q 001206 336 LRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQD 415 (1124)
Q Consensus 336 ~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~~~ 415 (1124)
....+.++||..|..+|.|++|.++|-.||.+.++....
T Consensus 496 -----------------------------------------~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~ 534 (579)
T KOG1125|consen 496 -----------------------------------------GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNH 534 (579)
T ss_pred -----------------------------------------CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccccc
Confidence 222346789999999999999999999999999986633
No 41
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.26 E-value=7.2e-10 Score=120.02 Aligned_cols=182 Identities=16% Similarity=0.140 Sum_probs=142.7
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 166 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 166 d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
.....+..++.+|..++..|++++|+..|++++... ++++....+++.+|.+|..+|++++|+..|+++++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--- 99 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--- 99 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---
Confidence 345678899999999999999999999999998863 455666778999999999999999999999999985
Q ss_pred hcCCCChhHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH--------------HHHH
Q 001206 246 TCGPSHPNTAATYINVAMMEEGL--------GNVHVALRYLHKALKCNQRLLGPDHIQTAAS--------------YHAI 303 (1124)
Q Consensus 246 ~~G~dhp~~a~al~nLA~iy~~l--------GdyeeAle~lekALei~~k~lG~d~p~~A~a--------------~~nL 303 (1124)
.++++....+++.+|.++... |++++|++.|++++... +++.....+ ...+
T Consensus 100 --~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~ 172 (235)
T TIGR03302 100 --HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYV 172 (235)
T ss_pred --CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667889999999886 88999999999998764 333322222 2356
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHH
Q 001206 304 AIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLD 383 (1124)
Q Consensus 304 A~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~ 383 (1124)
|.+|..+|++.+|+..++++++.+ ++ .+...+++.
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~-----p~----------------------------------------~~~~~~a~~ 207 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENY-----PD----------------------------------------TPATEEALA 207 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHC-----CC----------------------------------------CcchHHHHH
Confidence 777788888888888777776542 11 123346788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 001206 384 YINPSHDTKGRNVSTLKRKTYVAK 407 (1124)
Q Consensus 384 ~Lg~~y~~qGdyeeAl~~yekALk 407 (1124)
.+|.+|...|++++|..+++....
T Consensus 208 ~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 208 RLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999998876544
No 42
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.23 E-value=3.8e-10 Score=126.74 Aligned_cols=228 Identities=14% Similarity=0.096 Sum_probs=154.8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 169 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 248 (1124)
Q Consensus 169 ~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G 248 (1124)
..+..|...|.+|...+++++|.+.|.+|..+..+. .+....+.+|.+.|.+|... ++++|+++|++|+.++....
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G- 108 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG- 108 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-
Confidence 446677788899999999999999999999998873 44456788888888888776 99999999999999998753
Q ss_pred CCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 249 PSHPNTAATYINVAMMEEGL-GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 249 ~dhp~~a~al~nLA~iy~~l-GdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
.....+.++.++|.+|... |++++|+++|++|+++++.. ........++..+|.++..+|+|++|+..|++....+
T Consensus 109 -~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 109 -RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp --HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred -cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 4456688999999999999 99999999999999999764 2445567889999999999999999999999887653
Q ss_pred HHhcCCCCHHHH--HHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHH--HcCChHHHHHHHH
Q 001206 328 RAKLGPDDLRTQ--DAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHD--TKGRNVSTLKRKT 403 (1124)
Q Consensus 328 ~k~lG~dh~~t~--~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~--~qGdyeeAl~~ye 403 (1124)
...-. ....+. .....|.++..++...++.........++.. ....-..++..|-.++. ....+.+|+..|.
T Consensus 186 l~~~l-~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F---~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 186 LENNL-LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF---ASSREYKFLEDLLEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp CCHCT-TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS---TTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHT
T ss_pred hcccc-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 22111 111222 2334455665555544444433222222111 11223445555555553 3455666666665
Q ss_pred HHHH
Q 001206 404 YVAK 407 (1124)
Q Consensus 404 kALk 407 (1124)
+..+
T Consensus 262 ~~~~ 265 (282)
T PF14938_consen 262 SISR 265 (282)
T ss_dssp TSS-
T ss_pred ccCc
Confidence 4433
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=2.1e-09 Score=123.98 Aligned_cols=199 Identities=18% Similarity=0.139 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 210 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p 210 (1124)
.|+.+|..|.++.+-++....|.+|.++ ++....+|+..|.+++.+++|++|+.-|++|+.+ .|
T Consensus 362 lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~p 425 (606)
T KOG0547|consen 362 LYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DP 425 (606)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------Ch
Confidence 3888999999999999999999999987 6777789999999999999999999999999987 57
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 001206 211 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 290 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG 290 (1124)
..+.+|..++.+.++++++++++..|+.+... -|....+|...|.++..+++|++|+++|.+|+++-....+
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 78899999999999999999999999999874 3566778888999999999999999999999998643211
Q ss_pred CCcHHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcc
Q 001206 291 PDHIQTAASYHAIAIAL-SLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGT 363 (1124)
Q Consensus 291 ~d~p~~A~a~~nLA~ly-~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~ 363 (1124)
- +. .+..+..-|.+. .-.+++..|+.++.+|+++ +|+.-.+...|+.+..+.....+++....
T Consensus 498 ~-~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 498 I-IV-NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred c-cc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 0 11 112222222222 2348999999999999875 56666777888887777777777765443
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.21 E-value=2.9e-09 Score=135.18 Aligned_cols=248 Identities=14% Similarity=0.012 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..+..+|..+...|++++|+.+|++++++ .|....++..+|.++...|++++|+.++++++..
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~------- 112 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG------- 112 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence 3666888899999999999999999999987 4555678889999999999999999999999886
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH-------
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK------- 280 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lek------- 280 (1124)
.|+... +..+|.++...|++++|+.+|++++++ .|....++..+|.++...++.++|+..+++
T Consensus 113 -~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~ 182 (765)
T PRK10049 113 -APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAE 182 (765)
T ss_pred -CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHH
Confidence 344455 888999999999999999999999985 344556667788888888888877766653
Q ss_pred --------------------------------HHHHHHHhcC------CCcHHHHHHHHH-HHHHHHHcCChHHHHHHHH
Q 001206 281 --------------------------------ALKCNQRLLG------PDHIQTAASYHA-IAIALSLMEAYPLSVQHEQ 321 (1124)
Q Consensus 281 --------------------------------ALei~~k~lG------~d~p~~A~a~~n-LA~ly~~lGd~eeAle~le 321 (1124)
|++.++.... ...+....++.. ++. +...|++++|+..|+
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~-Ll~~g~~~eA~~~~~ 261 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA-LLARDRYKDVISEYQ 261 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH-HHHhhhHHHHHHHHH
Confidence 2222222211 011222233332 343 457799999999998
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHH
Q 001206 322 TTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKR 401 (1124)
Q Consensus 322 kALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~ 401 (1124)
++++. ++..+..........++..+..+.+............. ........+..|+.++..+|++++|+.+
T Consensus 262 ~ll~~-----~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~----~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 262 RLKAE-----GQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPET----IADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred Hhhcc-----CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC----CCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 87654 22223332222233455666666666554433221110 0001124455667778999999999999
Q ss_pred HHHHHHHHh
Q 001206 402 KTYVAKVKG 410 (1124)
Q Consensus 402 yekALkL~~ 410 (1124)
+++++...+
T Consensus 333 l~~~~~~~P 341 (765)
T PRK10049 333 TAHTINNSP 341 (765)
T ss_pred HHHHhhcCC
Confidence 998887754
No 45
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=1.3e-10 Score=128.06 Aligned_cols=235 Identities=16% Similarity=0.112 Sum_probs=184.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001206 133 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 212 (1124)
Q Consensus 133 l~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~ 212 (1124)
.++|++|+..|-+.+|.+.|+.+|... ....++..|+.+|....+...|+..|.+.++.+ |..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~---------~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--------P~~ 289 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF---------PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--------PFD 289 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC---------CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--------Cch
Confidence 467999999999999999999998753 334688999999999999999999999888763 555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 213 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 292 (1124)
Q Consensus 213 a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d 292 (1124)
...+..+|.++..++++++|+++|+.+++. |+....+...+|.-|+.-++.+-|+.||++.|.+- ..
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-----~~ 356 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-----AQ 356 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-----CC
Confidence 677888999999999999999999999984 55556666778888999999999999999999874 33
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--HhHHHHHHHHhccCCCchhh
Q 001206 293 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES--KAFEQQEAARNGTRKPDASI 370 (1124)
Q Consensus 293 ~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~--k~~e~aeAl~~~~~~~~~~~ 370 (1124)
....+.++|.++...++++-++..|++|+.... ......+.+.+|+...- +++..+.......+
T Consensus 357 ---speLf~NigLCC~yaqQ~D~~L~sf~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL------ 422 (478)
T KOG1129|consen 357 ---SPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL------ 422 (478)
T ss_pred ---ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-----CcchhhhhhhccceeEEeccchHHHHHHHHHHh------
Confidence 346788999999999999999999999998753 23334455555553322 23333333322222
Q ss_pred hhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 371 ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 371 a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
.......+.|.+|+.+..+.|+..+|..+|..|-.+.+..+
T Consensus 423 --~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 423 --TSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred --ccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 12335668899999999999999999999999888777655
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.9e-10 Score=132.95 Aligned_cols=183 Identities=19% Similarity=0.201 Sum_probs=156.2
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001206 119 HKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 198 (1124)
Q Consensus 119 ~K~~~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KAL 198 (1124)
.|........|.+++..|..+...|..++|+.+|..|-++... .-.-+..+|.-|..++.+..|..+|.+|+
T Consensus 336 SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G--------~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 336 SKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG--------CHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC--------CcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4555666677888888999999999999999999999888542 12246678999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 001206 199 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 278 (1124)
Q Consensus 199 eI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~l 278 (1124)
.|+ |.....++.+|.+.+..+.|.+|..+|+.++...+.... ..+.+.-++.|||.+|.+++++++|+.+|
T Consensus 408 ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 408 AIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-EKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred hcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-cccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 985 444567899999999999999999999999977666543 33356778999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 279 HKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 279 ekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
+++|.+. +..+.++..+|.+|..+|+++.|+++|.+||.+
T Consensus 479 q~aL~l~--------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 479 QKALLLS--------PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHcC--------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 9999886 445688999999999999999999999999986
No 47
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.19 E-value=4.8e-09 Score=133.27 Aligned_cols=156 Identities=19% Similarity=0.153 Sum_probs=128.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001206 133 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 212 (1124)
Q Consensus 133 l~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~ 212 (1124)
.....+....|++++|+..|.++..+ .+..+.++..+|.++...|++++|+.+|++++.+ .|..
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~--------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~ 82 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVH--------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQN 82 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Confidence 34445678899999999999888754 4566778999999999999999999999999987 2444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 213 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 292 (1124)
Q Consensus 213 a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d 292 (1124)
..++..+|.++...|++++|+.++++++.. .|.... +..+|.++...|++++|+.+|++++++. ++
T Consensus 83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-----P~ 148 (765)
T PRK10049 83 DDYQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-----PQ 148 (765)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC
Confidence 566789999999999999999999999885 344455 8889999999999999999999999875 33
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 001206 293 HIQTAASYHAIAIALSLMEAYPLSVQHEQ 321 (1124)
Q Consensus 293 ~p~~A~a~~nLA~ly~~lGd~eeAle~le 321 (1124)
...++..+|.++...++.++|+..++
T Consensus 149 ---~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 149 ---TQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred ---CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 34556667888888888887776665
No 48
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.4e-09 Score=123.47 Aligned_cols=234 Identities=15% Similarity=0.154 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCC
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lG--dydeAle~~~KALeI~er~lg~D 208 (1124)
.-+..+..++.+|+++.|++.+. ++++ .+......+..+|..+++.+| +|.+|..|...|+.+-
T Consensus 421 lei~ka~~~lk~~d~~~aieilk----v~~~---kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d------- 486 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILK----VFEK---KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID------- 486 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHH----HHHh---ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-------
Confidence 34455778899999999988653 2222 234444556778888888854 7899999999988762
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
...+.++.|.|.+.+..|++++|.++|++||. ++..-..+++|+|..+..+|++++|+++|-+...+.
T Consensus 487 -ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il--- 554 (840)
T KOG2003|consen 487 -RYNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL--- 554 (840)
T ss_pred -ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH---
Confidence 23467889999999999999999999999986 455567889999999999999999999999988876
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCch
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 368 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~ 368 (1124)
...+.+++.+|.+|..+.+..+|+++|-++..+ -+.+|..+.-+ +.++.+.++..+++......-.
T Consensus 555 -----~nn~evl~qianiye~led~aqaie~~~q~~sl-----ip~dp~ilskl---~dlydqegdksqafq~~ydsyr- 620 (840)
T KOG2003|consen 555 -----LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-----IPNDPAILSKL---ADLYDQEGDKSQAFQCHYDSYR- 620 (840)
T ss_pred -----HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-----CCCCHHHHHHH---HHHhhcccchhhhhhhhhhccc-
Confidence 235788999999999999999999999888765 37777765444 4444444444444432211111
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 369 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 409 (1124)
Q Consensus 369 ~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~ 409 (1124)
.-+...++...|+..|....=.++|+.||+++.-+.
T Consensus 621 -----yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 621 -----YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred -----ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 112334667788888888888899999999876543
No 49
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.18 E-value=1.5e-09 Score=122.10 Aligned_cols=190 Identities=16% Similarity=0.064 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
+..+...|..|...++|++|..+|.++..+..+. .+....+.+|...|.+|... ++.+|+.+|++|+.++... .+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~ 109 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--GR 109 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--Cc
Confidence 5566677888999999999999999999998874 44556778888888888776 9999999999999999763 34
Q ss_pred ChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~l-GdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
....+.++.++|.+|... |++++|+++|++|+++++... .......++.++|.++..+|+|++|+++|+++......
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 455788999999999999 999999999999999998743 34456788899999999999999999999998775422
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 288 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
.. ......-..+...+.++..+||...|...+++....
T Consensus 188 ~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 188 NN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred cc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 21 112234456678888999999999998877766543
No 50
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.18 E-value=1.4e-09 Score=133.39 Aligned_cols=283 Identities=15% Similarity=0.063 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
..++..++..++..|+|..+..+...++.... .....+..++.+|.+|..+|+|++|..||.+++... .+
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d 339 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----ND 339 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CC
Confidence 44677778888999999999999888887642 245677889999999999999999999999998752 22
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG----NVHVALRYLHKALKC 284 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lG----dyeeAle~lekALei 284 (1124)
+ ....+..||.+|...|+++.|..+|++.+.. .|....++.-||.+|...+ ..++|..++.++++.
T Consensus 340 ~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 340 N--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred C--ccccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 2 4567888999999999999999999998874 3444556666777777765 445666666666554
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccC
Q 001206 285 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTR 364 (1124)
Q Consensus 285 ~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~ 364 (1124)
. +....+|..||.+|....-+.. +.+|..|+.++......--+..+...+.+.+ ..+.+..+......+.
T Consensus 410 ~--------~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf-~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 410 T--------PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHF-RLGNIEKALEHFKSAL 479 (1018)
T ss_pred c--------cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH-HhcChHHHHHHHHHHh
Confidence 3 3456777788887776555544 8888888887777655544444433333322 2223333322221111
Q ss_pred CCchhhhhcC--CCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhhccccccccCCC
Q 001206 365 KPDASIASKG--HLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRESSDEETHAPE 441 (1124)
Q Consensus 365 ~~~~~~a~k~--~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~~~~~~~~~~iA~~E~~~E~~eqE~~I~e 441 (1124)
..-......+ ......+.++|+.++...++++.|.+.|...++.++.-....-+..+-...+...+++.+-.+.+..
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 1100000000 0112345678888888888888888888888877665543333333222223334444444444443
No 51
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.17 E-value=3.8e-09 Score=117.99 Aligned_cols=275 Identities=13% Similarity=0.029 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH-RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~-p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
...+++++++.+....+|.+++.|..-.+.+- |... ..-......||..+.-++.|++++++|++|+.+....
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~-- 155 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN-- 155 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--
Confidence 35567777777777777888888777666542 1111 2233566778999999999999999999999998663
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS--HPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~d--hp~~a~al~nLA~iy~~lGdyeeAle~lekALei 284 (1124)
.|...-..++..||.+|..+.++++|+.|..+|+++.....-.+ .-....+++.++..|..+|+.-.|.++.++|.++
T Consensus 156 ~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 156 DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 33334567899999999999999999999999999987654222 2345778899999999999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-----hHHHHHHH
Q 001206 285 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK-----AFEQQEAA 359 (1124)
Q Consensus 285 ~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k-----~~e~aeAl 359 (1124)
.-+. .+.+..+.++..+|.+|...|+.+.|..-|+.|+.+..... ..-. ...++...+..... ...-.+++
T Consensus 236 al~~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g-drmg-qv~al~g~Akc~~~~r~~~k~~~Cral 311 (518)
T KOG1941|consen 236 ALQH--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG-DRMG-QVEALDGAAKCLETLRLQNKICNCRAL 311 (518)
T ss_pred HHHh--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh-hhHH-HHHHHHHHHHHHHHHHHhhcccccchh
Confidence 8665 56677889999999999999999999999999999876542 2111 11111111111000 00001122
Q ss_pred HhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhh
Q 001206 360 RNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 412 (1124)
Q Consensus 360 ~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl 412 (1124)
......++....-.....+..+...++.+|..+|.-++=...+.++-+.....
T Consensus 312 e~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e~ 364 (518)
T KOG1941|consen 312 EFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEET 364 (518)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 11111112222222334567788999999999998888777776666555443
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.16 E-value=6.7e-11 Score=131.91 Aligned_cols=234 Identities=20% Similarity=0.226 Sum_probs=85.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001206 133 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 212 (1124)
Q Consensus 133 l~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~ 212 (1124)
+.+|.+++..|++++|++.+.+.+.... .+.....|..+|.+...+++++.|+..|++.+..- +..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~------~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~ 77 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIA------PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KAN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccc--------ccc
Confidence 4568899999999999999976654421 23444678889999999999999999999998762 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 213 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 292 (1124)
Q Consensus 213 a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d 292 (1124)
...+..++.+ ...+++++|+++++++.+.. .+ ...+..+..++...++++++..+++++.... .
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~---~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------~ 141 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERD------GD---PRYLLSALQLYYRLGDYDEAEELLEKLEELP------A 141 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------
T ss_pred cccccccccc-cccccccccccccccccccc------cc---cchhhHHHHHHHHHhHHHHHHHHHHHHHhcc------C
Confidence 4456667777 68999999999998876532 11 2334556678899999999999999977422 2
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHH-HHHhccCCCchhhh
Q 001206 293 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQE-AARNGTRKPDASIA 371 (1124)
Q Consensus 293 ~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~ae-Al~~~~~~~~~~~a 371 (1124)
.......+..+|.++.+.|+.++|+..|++++++ .++++.....+.|+.. ..+...... .+.......
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~----- 210 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAA----- 210 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHC-----
Confidence 2345677888999999999999999999999987 5778877766666542 222222211 221111100
Q ss_pred hcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 372 SKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 372 ~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
...+ .++..+|.+|...|++++|+.+|+++++..+.
T Consensus 211 -~~~~---~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 211 -PDDP---DLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp -HTSC---CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred -cCHH---HHHHHHHHHhcccccccccccccccccccccc
Confidence 1111 35678899999999999999999999987664
No 53
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.15 E-value=7.2e-09 Score=115.17 Aligned_cols=261 Identities=17% Similarity=0.075 Sum_probs=180.7
Q ss_pred cCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001206 123 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 202 (1124)
Q Consensus 123 ~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~e 202 (1124)
.....++...+++|..++..|+|.+|+..|..|++. +|....+++..|.+|..+|+-..|+.-+.+.|++
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-- 101 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-- 101 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--
Confidence 344566777889999999999999999999998865 6777888999999999999999999988888886
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------------------HHhcC-CC-----
Q 001206 203 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL--------------------------HLTCG-PS----- 250 (1124)
Q Consensus 203 r~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~--------------------------ek~~G-~d----- 250 (1124)
.|+.+.+...-|.+++.+|++++|+.-|++.|.-- ....+ .+
T Consensus 102 ------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 102 ------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred ------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHH
Confidence 47788888889999999999999998888877610 00000 01
Q ss_pred ---------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 001206 251 ---------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 321 (1124)
Q Consensus 251 ---------hp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~le 321 (1124)
.+..+..+..-|.+|...|+...|+.-++.+-++. . +....++.++.+++..|+.+.++...+
T Consensus 176 ~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-----~---DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 176 EMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-----Q---DNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred HHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-----c---cchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 22233445555667777777777777666665553 2 234678889999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHH---------HHH--hccCC--Cc---------------------
Q 001206 322 TTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQE---------AAR--NGTRK--PD--------------------- 367 (1124)
Q Consensus 322 kALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~ae---------Al~--~~~~~--~~--------------------- 367 (1124)
+||++ .++|....-.+..|..+........+ .+. ..... +.
T Consensus 248 ECLKl-----dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~ 322 (504)
T KOG0624|consen 248 ECLKL-----DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ 322 (504)
T ss_pred HHHcc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC
Confidence 99875 67877665555544332221111111 110 00000 00
Q ss_pred --h-----hhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhh
Q 001206 368 --A-----SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 412 (1124)
Q Consensus 368 --~-----~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl 412 (1124)
. .......++-.++|+.-+.+|.....|+.|+.-|++|+++..+.
T Consensus 323 ~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 323 FGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 0 00122344556788888999999999999999999998876543
No 54
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.15 E-value=1.2e-08 Score=131.35 Aligned_cols=193 Identities=13% Similarity=-0.045 Sum_probs=150.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 132 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP-YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 210 (1124)
Q Consensus 132 Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~-d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p 210 (1124)
....+..++..|++++|..++.++.......... .......+...+|.++...|++++|..++++++.... ..+..
T Consensus 412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~ 488 (903)
T PRK04841 412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYY 488 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHH
Confidence 4556777888999999999999987764322101 1123455667789999999999999999999987521 11222
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 001206 211 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 290 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG 290 (1124)
....++..+|.++...|++++|+.++++++.+..... .......++.++|.++..+|++++|..++++++.+.....+
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD--VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 3456778899999999999999999999999877642 22334567889999999999999999999999999877644
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 001206 291 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 329 (1124)
Q Consensus 291 ~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k 329 (1124)
...+....++..+|.++...|++++|..++++++.+...
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 605 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN 605 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence 444444556778899999999999999999999998764
No 55
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.14 E-value=5.7e-09 Score=119.43 Aligned_cols=171 Identities=18% Similarity=0.140 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
....+..+..++..|++++|+.++++++.. +|....++.. +..+...|++..+...+.+++.. ....
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~ 109 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDD--------YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPE 109 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcC
Confidence 344556677888999999999999998875 3333344444 66666666666665555555543 2355
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
++.....+..+|.++..+|++++|+..+++++++ .|....++..+|.+|..+|++++|+.++++++.....
T Consensus 110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~- 180 (355)
T cd05804 110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC- 180 (355)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-
Confidence 6777778888888999999999999999998885 2333566788899999999999999999888876521
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 324 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekAL 324 (1124)
........+..+|.++..+|++++|+.+|++++
T Consensus 181 ---~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 181 ---SSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred ---CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 112234567778888999999999998888875
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=7.8e-10 Score=122.11 Aligned_cols=177 Identities=18% Similarity=0.206 Sum_probs=152.2
Q ss_pred hhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001206 121 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 200 (1124)
Q Consensus 121 ~~~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI 200 (1124)
-+.....+...+..+++++..++++++|+++|+.+++. |+....+...+|..|+.-++.+-|+.||++.|.+
T Consensus 282 gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm 353 (478)
T KOG1129|consen 282 GLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM 353 (478)
T ss_pred hhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHh
Confidence 34445556777888999999999999999999999976 6667778888999999999999999999999998
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001206 201 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 280 (1124)
Q Consensus 201 ~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lek 280 (1124)
|..+| ..++|+|.|++..++++-++..|++|+.... +....+.+++|||.+....|++..|.++|+-
T Consensus 354 -----G~~sp---eLf~NigLCC~yaqQ~D~~L~sf~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrl 420 (478)
T KOG1129|consen 354 -----GAQSP---ELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRL 420 (478)
T ss_pred -----cCCCh---HHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-----CcchhhhhhhccceeEEeccchHHHHHHHHH
Confidence 55554 4689999999999999999999999998753 2445688999999999999999999999998
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 281 ALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 281 ALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
||.. +++.+.++.+||.+-.+.|+.++|..++..|-..
T Consensus 421 aL~~--------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 421 ALTS--------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred Hhcc--------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 8753 3456789999999999999999999999877654
No 57
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=1.9e-09 Score=126.81 Aligned_cols=185 Identities=17% Similarity=0.117 Sum_probs=157.1
Q ss_pred hcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001206 122 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 201 (1124)
Q Consensus 122 ~~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~ 201 (1124)
+.-....++++..+|......++-..|+..+++|+++ +|....++..||..|...|.-.+|+.++.+=|...
T Consensus 312 VkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~ 383 (579)
T KOG1125|consen 312 VKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNK 383 (579)
T ss_pred HhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 3445677889999999999999999999999999987 78888999999999999999999999887765432
Q ss_pred H-----H------hcC----------------------CCCh--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 202 E-----R------ELG----------------------LDHP--DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 202 e-----r------~lg----------------------~D~p--~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
- . ..+ ..++ ....++..||.+|...|+|++|+.||+.||.
T Consensus 384 p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~----- 458 (579)
T KOG1125|consen 384 PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ----- 458 (579)
T ss_pred ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh-----
Confidence 0 0 000 0011 2245678899999999999999999999997
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 247 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 247 ~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
..|....+++.||-.+..-.+.++|+..|++||++. |...++.++||..|..+|.|++|..||-.||.+
T Consensus 459 ---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 459 ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred ---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 367788999999999999999999999999999986 667899999999999999999999999999999
Q ss_pred HHHh
Q 001206 327 LRAK 330 (1124)
Q Consensus 327 ~~k~ 330 (1124)
.++.
T Consensus 528 q~ks 531 (579)
T KOG1125|consen 528 QRKS 531 (579)
T ss_pred hhcc
Confidence 8763
No 58
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.09 E-value=5.4e-09 Score=116.83 Aligned_cols=272 Identities=13% Similarity=0.102 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
.....+.|..++...++++|+..+.+.|...... ......|..+..+...+|.|.+++.+---.+..+... .|
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~-----~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~d 78 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDL-----MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--ED 78 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHH-----HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HH
Confidence 4455667888889999999999999999876543 3455678888899999999999998877767666553 34
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
......+|.||+..+....++.+++.|.+-.+.+-....| ..-......+|.++..++.|++++++|++|+.+....
T Consensus 79 s~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~ 155 (518)
T KOG1941|consen 79 SDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN 155 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 4557789999999999999999999998887764211111 1123455668999999999999999999999998665
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHH---HHHHHHHHHHHhHHHHHHHHhccCC
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQD---AAAWLEYFESKAFEQQEAARNGTRK 365 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~---a~~~La~l~~k~~e~aeAl~~~~~~ 365 (1124)
.|...-..++..||.+|..+.|+++|+-+..+|+++.+.. +-++..... ++..++......++.-.+.......
T Consensus 156 --~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~-~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea 232 (518)
T KOG1941|consen 156 --DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY-GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEA 232 (518)
T ss_pred --CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc-CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3333446789999999999999999999999999997765 333332221 1222222222222221122111112
Q ss_pred CchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 366 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 366 ~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
........+....+..+.-+|.+|..+|+.+.|...|++|+.+...++
T Consensus 233 ~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g 280 (518)
T KOG1941|consen 233 MKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG 280 (518)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh
Confidence 222233344445667788899999999999999999999999887766
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=8.9e-09 Score=114.18 Aligned_cols=241 Identities=13% Similarity=0.061 Sum_probs=182.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC--h
Q 001206 133 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH--P 210 (1124)
Q Consensus 133 l~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~--p 210 (1124)
|..|..++-..+-++|++.|.+.++. ++.+..+...||.+|...|+.+.|+...+..+.- +|. .
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s------pdlT~~ 104 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES------PDLTFE 104 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC------CCCchH
Confidence 34466677788899999999988864 7788999999999999999999999988765542 222 2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 001206 211 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 290 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG 290 (1124)
....++..||.-|+..|-++.|+..|....+. ....-.++..|..+|....+|++|++.-++...+..+
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q--- 173 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ--- 173 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---
Confidence 34678899999999999999999999887652 2223567788999999999999999998877766432
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhh
Q 001206 291 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASI 370 (1124)
Q Consensus 291 ~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~ 370 (1124)
.....++..|..||..+....+++.|...+++|++. ++....+-..++.+....++.+++..... ..
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e-----~v 240 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALE-----RV 240 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHH-----HH
Confidence 335678899999999999999999999999999975 33333344445544444444444332211 11
Q ss_pred hhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 371 ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 371 a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
...++.-+.+++..|..+|..+|+.++.+.++.++++....
T Consensus 241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 22334457789999999999999999999999988775543
No 60
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.07 E-value=6.4e-10 Score=100.14 Aligned_cols=78 Identities=37% Similarity=0.533 Sum_probs=71.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
||+++.+|.++|.+|..+|+|++|+.+|++|+.+ .+..|.+++.++.++.++|.+|..+|++++|+++|++|++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 6889999999999999999999999999999999 66678888889999999999999999999999999999998753
No 61
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.06 E-value=3.9e-08 Score=120.44 Aligned_cols=176 Identities=17% Similarity=0.197 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
...+.++..|...+.+|++++|+.++.+++.. .|....+|+.||.+|..+|+.++|+..+-.|-.+ .
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-----~ 203 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-----N 203 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-----C
Confidence 34678889999999999999999999999876 6777889999999999999999999888777554 2
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
|.....|..+|.....+|++++|.-||.+|+.. .|.....++.-+.+|.++|++..|.+.|.+++.+.-
T Consensus 204 ---p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 204 ---PKDYELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred ---CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 223366788899999999999999999999985 345567788899999999999999999999988752
Q ss_pred HhcCCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 001206 287 RLLGPDHI-QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 330 (1124)
Q Consensus 287 k~lG~d~p-~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~ 330 (1124)
+... .........+..+...++.+.|++.+..++......
T Consensus 273 ----~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~ 313 (895)
T KOG2076|consen 273 ----PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE 313 (895)
T ss_pred ----chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Confidence 1111 222334455777778888888888888887743333
No 62
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.05 E-value=1.2e-08 Score=116.77 Aligned_cols=210 Identities=17% Similarity=0.070 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..++.+|..+...|+.+.|...+.++...... ...........|.++...|++++|+.++++++..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~------- 72 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDD------- 72 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------
Confidence 3567788888898999999998888887776432 2234556777899999999999999999999876
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
+|....++.. +..++..|++..+...+.+++.. ..+.++.....+..+|.++..+|++++|+..+++++++.
T Consensus 73 -~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-- 144 (355)
T cd05804 73 -YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-- 144 (355)
T ss_pred -CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence 2333344444 66677777766666666666553 234677788888899999999999999999999999875
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCc
Q 001206 288 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 367 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~ 367 (1124)
++ ...++..+|.+|...|++++|+.++++++..... ++.
T Consensus 145 ---p~---~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~------------------------------ 183 (355)
T cd05804 145 ---PD---DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSM------------------------------ 183 (355)
T ss_pred ---CC---CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----Ccc------------------------------
Confidence 22 2567888999999999999999999988765311 100
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 368 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 407 (1124)
Q Consensus 368 ~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALk 407 (1124)
.....+..++.++..+|++++|+..|++++.
T Consensus 184 ---------~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 184 ---------LRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred ---------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 0112355667777778888888888877743
No 63
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.05 E-value=1.1e-09 Score=98.71 Aligned_cols=78 Identities=32% Similarity=0.454 Sum_probs=72.0
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 001206 251 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 329 (1124)
Q Consensus 251 hp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k 329 (1124)
||.++.++.++|.+|..+|+|++|+.+|++|+++ .+..|.+++.++.++.++|.+|..+|++++|+.+++++++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 6889999999999999999999999999999999 67778888899999999999999999999999999999999864
No 64
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.99 E-value=4.4e-09 Score=106.76 Aligned_cols=110 Identities=16% Similarity=0.149 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 001206 149 VTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 228 (1124)
Q Consensus 149 l~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGd 228 (1124)
..+|++++++ +|.. +..+|.++...|++++|+.+|++++.+ .|....++.++|.++..+|+
T Consensus 13 ~~~~~~al~~--------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV--------DPET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc--------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 4567788776 3432 567899999999999999999999876 46678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 229 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 229 yeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
+++|+.+|++++.+ .|....+++++|.++..+|++++|+..|++++.+.
T Consensus 74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999985 45667889999999999999999999999999875
No 65
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.99 E-value=1.2e-08 Score=127.29 Aligned_cols=170 Identities=15% Similarity=0.041 Sum_probs=143.5
Q ss_pred HHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 129 GRQLLESS-KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 129 Ar~Ll~lG-~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
++.++..+ .+....+....+...+-+++.+... .+....++.+||.+...+|.+++|+.+++.++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~------- 115 (694)
T PRK15179 48 GRELLQQARQVLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR------- 115 (694)
T ss_pred HHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-------
Confidence 44444433 3444556667777777777776654 3566889999999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
.|+...+..++|.++.+++++++|+..+++++.. .|+.+..++.+|.++.++|+|++|+.+|++++..
T Consensus 116 -~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--- 183 (694)
T PRK15179 116 -FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--- 183 (694)
T ss_pred -CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc---
Confidence 4667889999999999999999999999999984 5777889999999999999999999999999872
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 288 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
++....++..+|.++..+|+.++|...|++|++.+
T Consensus 184 -----~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 184 -----HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 34556889999999999999999999999999874
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.7e-08 Score=112.99 Aligned_cols=244 Identities=13% Similarity=0.068 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
.....+..+|.+++..|++++|+..|++++-+ ++++...+...|.++...|++++-..+....+.+..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~---- 297 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK---- 297 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh----
Confidence 34556788899999999999999999998765 677777788888888888888776665555544421
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
.++.-++--|.+++...+|..|+.+-++++.. .+....+|..-|.++..+|+.++|+-.|+.|..+.
T Consensus 298 ----~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 298 ----YTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred ----cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 12334444566667777788888777777764 23334566677888888888888888888777665
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH------hcCC----CCHHHHH----------------
Q 001206 287 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA------KLGP----DDLRTQD---------------- 340 (1124)
Q Consensus 287 k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k------~lG~----dh~~t~~---------------- 340 (1124)
|....+|..|-.+|...|.+.+|......++..+.. ++|. .++.+..
T Consensus 365 -------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y 437 (564)
T KOG1174|consen 365 -------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY 437 (564)
T ss_pred -------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc
Confidence 455677777777888888888877777776665532 1220 0111111
Q ss_pred -----HHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhh
Q 001206 341 -----AAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 412 (1124)
Q Consensus 341 -----a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl 412 (1124)
..+-|....+. ++..-++.... ..+. .-..++..||.++.+++.+.+|+.+|..||++.++.
T Consensus 438 ~~AV~~~AEL~~~Eg~-~~D~i~LLe~~--------L~~~-~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGP-TKDIIKLLEKH--------LIIF-PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHHHHHHhhCc-cchHHHHHHHH--------Hhhc-cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 11111110000 00000110000 0111 123567889999999999999999999999987764
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.97 E-value=1.5e-07 Score=111.33 Aligned_cols=251 Identities=12% Similarity=-0.003 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
...++-.|..+..+|+++.|..+|.++.+.. +++. ..+...++.++...|++++|+..+++.++.
T Consensus 118 ~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-------- 182 (409)
T TIGR00540 118 VLNLIKAAEAAQQRGDEARANQHLEEAAELA-----GNDN--ILVEIARTRILLAQNELHAARHGVDKLLEM-------- 182 (409)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 4456677888999999999999999987542 1111 123444589999999999999999888776
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHH-h----c----------CCCCh----hH
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL---------------LHL-T----C----------GPSHP----NT 254 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei---------------~ek-~----~----------G~dhp----~~ 254 (1124)
.|+...++..++.+|...|++++|++++.+.++. ... . . -...| ..
T Consensus 183 ~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~ 262 (409)
T TIGR00540 183 APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHN 262 (409)
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCC
Confidence 2444567888999999999999999888777641 000 0 0 00122 24
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 001206 255 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 334 (1124)
Q Consensus 255 a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~d 334 (1124)
...+..+|..+...|++++|++.++++++.. ++....... ......+...++...++..++++++. .++
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~-----~p~ 331 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKN-----VDD 331 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHh-----CCC
Confidence 5677888999999999999999999999864 333211101 11223333457778888888877764 477
Q ss_pred CH--HHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhh
Q 001206 335 DL--RTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 412 (1124)
Q Consensus 335 h~--~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl 412 (1124)
++ ....++.|+.+ ..+.++.++.......... ..++. ..+..+|.++..+|+.++|..+|++++...-.+
T Consensus 332 ~~~~~ll~sLg~l~~-~~~~~~~A~~~le~a~a~~------~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~ 403 (409)
T TIGR00540 332 KPKCCINRALGQLLM-KHGEFIEAADAFKNVAACK------EQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAI 403 (409)
T ss_pred ChhHHHHHHHHHHHH-HcccHHHHHHHHHHhHHhh------cCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 78 77778888874 4444555554443111110 01122 235589999999999999999999998876655
Q ss_pred c
Q 001206 413 Y 413 (1124)
Q Consensus 413 ~ 413 (1124)
.
T Consensus 404 ~ 404 (409)
T TIGR00540 404 Q 404 (409)
T ss_pred c
Confidence 4
No 68
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.5e-08 Score=113.60 Aligned_cols=174 Identities=19% Similarity=0.181 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
-..-+..+.++...|++++|+..--..+.+ +...+.+++..|.+++..++.+.|+.+|+++|.+ +++
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-----dpd 235 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRL-----DPD 235 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhcc-----Chh
Confidence 444455677888999999998876666655 5667889999999999999999999999999987 455
Q ss_pred Chh---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 001206 209 HPD---------TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYL 278 (1124)
Q Consensus 209 ~p~---------~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~d-hp~~a~al~nLA~iy~~lGdyeeAle~l 278 (1124)
|.. ....+..-|+-.++.|+|.+|.++|..||.+ .++ ....+.+|.|.|.+...+|+..+|+.-.
T Consensus 236 h~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i-----dP~n~~~naklY~nra~v~~rLgrl~eaisdc 310 (486)
T KOG0550|consen 236 HQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI-----DPSNKKTNAKLYGNRALVNIRLGRLREAISDC 310 (486)
T ss_pred hhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC-----CccccchhHHHHHHhHhhhcccCCchhhhhhh
Confidence 443 3444556788889999999999999999986 233 2346788999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 001206 279 HKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 328 (1124)
Q Consensus 279 ekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~ 328 (1124)
+.|+.+- +....+|..-|.++..+++|++|++.|++|++.-.
T Consensus 311 ~~Al~iD--------~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 311 NEALKID--------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred hhhhhcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999885 55678899999999999999999999999998743
No 69
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.95 E-value=1.8e-07 Score=110.55 Aligned_cols=245 Identities=13% Similarity=-0.010 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.++..+..|...+..|+++.|++.+.++.+. .+.....+...|.++..+|+++.|..++.++.+.. +
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p 149 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-----G 149 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C
Confidence 4667788899999999999999999887654 23444567788999999999999999999987642 2
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC--- 284 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei--- 284 (1124)
+.. ..+....+.++...|++++|+..+++.++. .|....++..++.+|...|++++|++++.+.++.
T Consensus 150 ~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 150 NDN--ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred cCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 221 123444599999999999999999998874 3444467788999999999999999988877742
Q ss_pred ----H--------HHhc-----C----------CCcH----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 001206 285 ----N--------QRLL-----G----------PDHI----QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 333 (1124)
Q Consensus 285 ----~--------~k~l-----G----------~d~p----~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~ 333 (1124)
. ...+ . ...+ .....+..+|..+...|++++|+..++++++.. +
T Consensus 220 ~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----p 294 (409)
T TIGR00540 220 DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----G 294 (409)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----C
Confidence 0 0000 0 0011 134667788999999999999999999998753 3
Q ss_pred CCHHHH-HHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHH--HHHHHHHHHHHHcCChHHHHHHHHH--HHHH
Q 001206 334 DDLRTQ-DAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVS--DLLDYINPSHDTKGRNVSTLKRKTY--VAKV 408 (1124)
Q Consensus 334 dh~~t~-~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~va--ell~~Lg~~y~~qGdyeeAl~~yek--ALkL 408 (1124)
++.... .....+..+..+........... ..+.++.-. .++..+|.++...|++++|.++|++ +++.
T Consensus 295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~--------~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 295 DDRAISLPLCLPIPRLKPEDNEKLEKLIEK--------QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred CcccchhHHHHHhhhcCCCChHHHHHHHHH--------HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 333211 11111111211111111111111 111223333 6788999999999999999999995 5444
No 70
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.95 E-value=5.1e-09 Score=116.88 Aligned_cols=168 Identities=26% Similarity=0.246 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 209 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~ 209 (1124)
..+.....++...++++++..++.++... ...+.....|..+|.++...|++++|+.+|++|+.+ .
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~ 176 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEEL------PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------D 176 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-------T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------C
Confidence 44455566788899999999999887643 223455678999999999999999999999999998 3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 001206 210 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 289 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~l 289 (1124)
|+...+...++.++...|+++++.+.+....... +.++ ..+..+|.+|..+|++++|+.+|++++...
T Consensus 177 P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~---~~~~~la~~~~~lg~~~~Al~~~~~~~~~~---- 244 (280)
T PF13429_consen 177 PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDP---DLWDALAAAYLQLGRYEEALEYLEKALKLN---- 244 (280)
T ss_dssp TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSC---CHCHHHHHHHHHHT-HHHHHHHHHHHHHHS----
T ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHH---HHHHHHHHHhcccccccccccccccccccc----
Confidence 4455667788999999999999888777766543 1233 345678999999999999999999988764
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 290 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 290 G~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
+.....+..+|.++...|++++|..+++++++..
T Consensus 245 ----p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 245 ----PDDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp ----TT-HHHHHHHHHHHT-------------------
T ss_pred ----cccccccccccccccccccccccccccccccccc
Confidence 3344667788999999999999999999988754
No 71
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4.7e-08 Score=114.57 Aligned_cols=181 Identities=19% Similarity=0.191 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.++..-.+|...+...+|..|++.|.+++.+. .....+.+.|.+|+.+|.+.+++..+.++++.-.... .
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-a 292 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-A 292 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-H
Confidence 56678889999999999999999999999984 3345678999999999999999999999887644321 1
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------hc------CCCChhHHHHHHHHHHHHHHCC
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL------------TC------GPSHPNTAATYINVAMMEEGLG 269 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek------------~~------G~dhp~~a~al~nLA~iy~~lG 269 (1124)
+...++.++..+|..|..+++++.|+.+|+++|.-.+. .. .--.|..+.-...-|..++..|
T Consensus 293 d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 293 DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc
Confidence 23336677777899999999999999999999874322 00 0012333444445577777777
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 270 NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 270 dyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
+|..|+.+|.+|+... |..+..|.|.|.+|.++|.+..|+...++++++
T Consensus 373 dy~~Av~~YteAIkr~--------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD--------PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred CHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 7777777777766542 555677777777777777777777777777665
No 72
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.94 E-value=1.3e-07 Score=111.50 Aligned_cols=243 Identities=15% Similarity=0.025 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLL-AVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nL-G~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
.++..+..|...+..|+|++|++.+.++-.. .++ ...++.+ +.+...+|+++.|..+++++.+..
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~------~~~---p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~----- 148 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADH------AEQ---PVVNYLLAAEAAQQRGDEARANQHLERAAELA----- 148 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------ccc---hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----
Confidence 4666788888889999999999776664432 112 2233444 566699999999999999997642
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN- 285 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~- 285 (1124)
++. . .......+.++...|++++|+.+++++++. .|....++..++.+|...|++++|++.+.+..+..
T Consensus 149 ~~~-~-~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 149 DND-Q-LPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred Ccc-h-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 111 1 122334588999999999999999998774 34445667778999999999999997776655320
Q ss_pred ------------------HHh---------------cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 001206 286 ------------------QRL---------------LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 332 (1124)
Q Consensus 286 ------------------~k~---------------lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG 332 (1124)
... +....+....++..+|..+...|+.++|...++++++.
T Consensus 219 ~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------ 292 (398)
T PRK10747 219 GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR------ 292 (398)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------
Confidence 000 00011223446677899999999999999999888762
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 333 PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 333 ~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
+.|+.....+..+ ..+....+..... ...+.++.-.+++..+|.++...+++.+|..+|++++++.+.
T Consensus 293 ~~~~~l~~l~~~l---~~~~~~~al~~~e--------~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 293 QYDERLVLLIPRL---KTNNPEQLEKVLR--------QQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred CCCHHHHHHHhhc---cCCChHHHHHHHH--------HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3344433333322 1122222211110 111223444567888889999999999999999888887544
No 73
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.93 E-value=3.7e-08 Score=122.82 Aligned_cols=138 Identities=10% Similarity=0.010 Sum_probs=126.3
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001206 124 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 203 (1124)
Q Consensus 124 ~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er 203 (1124)
.+..++..++.+|.+....|.+++|+.+++.++++ .|+...+..++|.++..++++++|+..+++++..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--- 149 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--- 149 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---
Confidence 34455888999999999999999999999999988 6788899999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001206 204 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 283 (1124)
Q Consensus 204 ~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALe 283 (1124)
.|+.+.+++.+|.++..+|+|++|+++|++++. .+++...++.++|.++..+|+.++|...|++|++
T Consensus 150 -----~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 150 -----GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred -----CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466788999999999999999999999999987 2567788999999999999999999999999998
Q ss_pred HH
Q 001206 284 CN 285 (1124)
Q Consensus 284 i~ 285 (1124)
..
T Consensus 217 ~~ 218 (694)
T PRK15179 217 AI 218 (694)
T ss_pred hh
Confidence 76
No 74
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.92 E-value=1.4e-08 Score=105.06 Aligned_cols=132 Identities=14% Similarity=0.060 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 001206 210 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 289 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~l 289 (1124)
...+.+++++|.++..+|++++|+.+|++++.+. +++.....++.++|.+|..+|++++|+.+|++++.+....
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~- 105 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL- 105 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Confidence 3467788999999999999999999999999873 2445567799999999999999999999999999874221
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 001206 290 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 347 (1124)
Q Consensus 290 G~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~ 347 (1124)
+..+...+.++..+|..+..+|++++|+.++++++..+++.++.++..+.....|+..
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~ 163 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKI 163 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 1123334455566666666999999999999999999999999888777666666653
No 75
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.91 E-value=2.4e-08 Score=103.40 Aligned_cols=123 Identities=14% Similarity=0.061 Sum_probs=97.0
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 168 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 247 (1124)
Q Consensus 168 p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~ 247 (1124)
...+.+++.+|.++..+|++++|+.+|++++.+. .++.....++.++|.+|...|++++|+.+|++++.+....
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~- 105 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL- 105 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Confidence 3467889999999999999999999999999873 3445567799999999999999999999999999862211
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 001206 248 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 296 (1124)
Q Consensus 248 G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~ 296 (1124)
+..+..++.++.++|..+..+|++++|+.+|++++.++++.++.++...
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 1112233444555555555999999999999999999998887776443
No 76
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.89 E-value=3.3e-08 Score=100.44 Aligned_cols=121 Identities=14% Similarity=0.081 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 001206 191 TIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 270 (1124)
Q Consensus 191 le~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGd 270 (1124)
..+|++++.+ .|+. +.++|.++...|++++|+.+|++++.+ .|....++.++|.++..+|+
T Consensus 13 ~~~~~~al~~--------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV--------DPET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc--------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 3567777776 3432 567899999999999999999999874 56678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 001206 271 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 343 (1124)
Q Consensus 271 yeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~ 343 (1124)
+++|+.+|++++.+. +.....++++|.++..+|++++|+..|++++++ .++++.......
T Consensus 74 ~~~A~~~y~~Al~l~--------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~-----~p~~~~~~~~~~ 133 (144)
T PRK15359 74 YTTAINFYGHALMLD--------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM-----SYADASWSEIRQ 133 (144)
T ss_pred HHHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHH
Confidence 999999999999864 445688999999999999999999999999986 467766554443
No 77
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.88 E-value=2.4e-07 Score=109.21 Aligned_cols=239 Identities=9% Similarity=-0.054 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT-AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 209 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~-A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~ 209 (1124)
.++..+.....+|+++.|..+|.++.+. .+.. .......+.++...|++++|+..+++.++. .
T Consensus 120 ~~llaA~aA~~~g~~~~A~~~l~~A~~~--------~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~ 183 (398)
T PRK10747 120 NYLLAAEAAQQRGDEARANQHLERAAEL--------ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------A 183 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------C
Confidence 3455567779999999999999999765 2222 122334589999999999999999998776 3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------HHHh---------------cCCCChhHH
Q 001206 210 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYL-------------------LHLT---------------CGPSHPNTA 255 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~lGdyeeAley~ekALei-------------------~ek~---------------~G~dhp~~a 255 (1124)
|+...++..++.+|...|++++|++.+.+..+. .... .....+...
T Consensus 184 P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~ 263 (398)
T PRK10747 184 PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQV 263 (398)
T ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCH
Confidence 444567888999999999999999777665531 0000 001122334
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 001206 256 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD 335 (1124)
Q Consensus 256 ~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh 335 (1124)
.+...+|..+...|+.++|...++++++. ..++..+..+ +. ...++.++|+..+++.++. .+++
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l~~l~---~~--l~~~~~~~al~~~e~~lk~-----~P~~ 327 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLKR------QYDERLVLLI---PR--LKTNNPEQLEKVLRQQIKQ-----HGDT 327 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHHH---hh--ccCCChHHHHHHHHHHHhh-----CCCC
Confidence 56677899999999999999999999873 2344333222 22 2448999999988877654 4677
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 336 LRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 336 ~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
+....++..+..-. +.+..++.......... ++. ..+..++.++..+|+.++|..+|++++.+...
T Consensus 328 ~~l~l~lgrl~~~~-~~~~~A~~~le~al~~~--------P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 328 PLLWSTLGQLLMKH-GEWQEASLAFRAALKQR--------PDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcC--------CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 77766666665433 34444444433222221 122 34568999999999999999999999987643
No 78
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.85 E-value=7.5e-08 Score=103.05 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=104.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001206 142 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 221 (1124)
Q Consensus 142 qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~ 221 (1124)
.++.++++..+++++.. +|.....|..||.+|...|++++|+..|++|+.+ .|+...++.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 56678888888888876 6777889999999999999999999999999997 3556778899999
Q ss_pred HH-HHcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 222 FY-YRLQH--TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 222 iy-~~lGd--yeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
++ ...|+ +++|.+++++++++ +|....++++||.++..+|+|++|+.+|++++++.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 74 77787 59999999999985 55567889999999999999999999999999875
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.84 E-value=1.3e-06 Score=105.84 Aligned_cols=154 Identities=16% Similarity=0.028 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 001206 254 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 333 (1124)
Q Consensus 254 ~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~ 333 (1124)
...+++.||..|...|++++|++++++|++.. |.....|...|.+|..+|++.+|..+++.|..+ +.
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L-----D~ 259 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--------PTLVELYMTKARILKHAGDLKEAAEAMDEAREL-----DL 259 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC-----Ch
Confidence 35678999999999999999999999999864 556788999999999999999999999888765 22
Q ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHh-ccCCCchhhhhcCCCcHHHHHH--HHHHHHHHcCChHHHHHHHHHHHHHHh
Q 001206 334 DDLRTQDAAAWLEYFESKAFEQQEAARN-GTRKPDASIASKGHLSVSDLLD--YINPSHDTKGRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 334 dh~~t~~a~~~La~l~~k~~e~aeAl~~-~~~~~~~~~a~k~~~~vaell~--~Lg~~y~~qGdyeeAl~~yekALkL~~ 410 (1124)
. -+.+.+...-..+..+..+.++.... ...... ....+...+.-+|+ ..|.+|.++|++..|++.|....+++.
T Consensus 260 ~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~--~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 260 A-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDV--DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred h-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC--CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1 12222333333444445555544332 222221 01111112222333 358889999999999999999999999
Q ss_pred hhccCCCCCCCCC
Q 001206 411 NFYQDNNLTSPDG 423 (1124)
Q Consensus 411 sl~~~~~~~~~~i 423 (1124)
.+...+-.-|...
T Consensus 337 ~~~~DQfDFH~Yc 349 (517)
T PF12569_consen 337 DFEEDQFDFHSYC 349 (517)
T ss_pred HHhcccccHHHHH
Confidence 9987777666443
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.83 E-value=8.1e-07 Score=107.72 Aligned_cols=256 Identities=17% Similarity=0.086 Sum_probs=178.0
Q ss_pred hhhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001206 120 KQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 199 (1124)
Q Consensus 120 K~~~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALe 199 (1124)
+-.....++-..+|.++..|..+++++.|.++.++++++. ..+.+.+|+.||.++...+++.+|+.....+++
T Consensus 469 ~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3333444555788999999999999999999999999872 234567999999999999999999999999988
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---------------------------------
Q 001206 200 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT--------------------------------- 246 (1124)
Q Consensus 200 I~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~--------------------------------- 246 (1124)
-+...++. +..-..+....++.++|+..+...|.+|+..
T Consensus 542 E~~~N~~l--------~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 542 EFGDNHVL--------MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred Hhhhhhhh--------chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 75442211 1111122222444455554444444444410
Q ss_pred --------------------------cCCCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 001206 247 --------------------------CGPSHPN--TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 298 (1124)
Q Consensus 247 --------------------------~G~dhp~--~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~ 298 (1124)
.+++++. ....+...|..+...++.++|.-++.+|-.+. +..+.
T Consensus 614 r~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~ 685 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--------PLSAS 685 (799)
T ss_pred HHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------hhhHH
Confidence 0111111 12344567888888999999999999988775 56788
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHH--HHhccCCCchhhhhcCCC
Q 001206 299 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEA--ARNGTRKPDASIASKGHL 376 (1124)
Q Consensus 299 a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeA--l~~~~~~~~~~~a~k~~~ 376 (1124)
.|+..|.++..+|++.+|.+.|..|+.+ .++|.....+++-+..- .+.-..++. +..... +-.+
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al~l-----dP~hv~s~~Ala~~lle-~G~~~la~~~~~L~dal--------r~dp 751 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVALAL-----DPDHVPSMTALAELLLE-LGSPRLAEKRSLLSDAL--------RLDP 751 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHH-hCCcchHHHHHHHHHHH--------hhCC
Confidence 8999999999999999999999999876 78888776666544321 111111111 211111 1223
Q ss_pred cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhh
Q 001206 377 SVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 412 (1124)
Q Consensus 377 ~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl 412 (1124)
...++|+++|.++.++|+.++|..+|+-|+++.++.
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 455899999999999999999999999999998764
No 81
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.83 E-value=5.2e-07 Score=100.47 Aligned_cols=253 Identities=13% Similarity=0.013 Sum_probs=167.0
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001206 124 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 203 (1124)
Q Consensus 124 ~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er 203 (1124)
......++.+.+|.+|...|..+.|+.+.+..+..- +-.......++..||.-|+..|-++.|...|...++.-
T Consensus 64 ~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp----dlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-- 137 (389)
T COG2956 64 EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP----DLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-- 137 (389)
T ss_pred cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch--
Confidence 445556778889999999999999998776655431 01122345678889999999999999998888766531
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001206 204 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 283 (1124)
Q Consensus 204 ~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALe 283 (1124)
.-...++..|-.+|....+|++|++.-++...+-.+ .....++..|+.||..+....+++.|..++.+|++
T Consensus 138 ------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 138 ------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred ------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 113456778888999999999999888776654221 23456788889999999999999999999999987
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcc
Q 001206 284 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGT 363 (1124)
Q Consensus 284 i~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~ 363 (1124)
.. +...++-..+|.++...|+|..|++.++.+++- ++..+......|...+.+.+..++...-..
T Consensus 209 a~--------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-------n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 209 AD--------KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-------NPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred hC--------ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 64 334555667899999999999999888877653 333334444444443333333333221111
Q ss_pred CCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 364 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 364 ~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
..... ..-.++...++..-..+.-.++|..+..+.++-.+++.
T Consensus 274 ~~~~~-------~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 274 RAMET-------NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred HHHHc-------cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence 10000 00112334455555666666777777777776666554
No 82
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=1.9e-07 Score=100.03 Aligned_cols=120 Identities=17% Similarity=0.180 Sum_probs=103.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001206 184 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 263 (1124)
Q Consensus 184 lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~ 263 (1124)
.++.++++..+++++.. +|+....+..||.+|...|++++|+.+|++|+.+ .|....++.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 67778899999998886 4666889999999999999999999999999986 3556788899999
Q ss_pred H-HHHCCC--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 264 M-EEGLGN--VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 264 i-y~~lGd--yeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
+ |...|+ +++|+.+|++++++. +....+++.||.++..+|++++|+.++++++++.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~d--------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALD--------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7 477787 599999999999874 3445788999999999999999999999998873
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.6e-07 Score=108.49 Aligned_cols=196 Identities=21% Similarity=0.194 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--h
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER--E 204 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er--~ 204 (1124)
.....+...+..|+..|.+.+.+..+.++++...... .+...++.++..+|..|..+++++.|+.+|++++.-.+. +
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ 333 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL 333 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH
Confidence 4445566778888888988888888888877654331 122346778888999999999999999999998875432 1
Q ss_pred c----------------CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 001206 205 L----------------GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 268 (1124)
Q Consensus 205 l----------------g~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~l 268 (1124)
+ .--.|..+.--..-|..++..|+|..|+.+|.+|+.. .|..+..|.|.|.+|..+
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKL 405 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHH
Confidence 0 0113444555567799999999999999999998874 588899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 001206 269 GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 347 (1124)
Q Consensus 269 GdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~ 347 (1124)
|++..|+...++++++ ++.....|..-|.++..+.+|++|++.|+++++. ++....+..++..
T Consensus 406 ~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRR 468 (539)
T ss_pred hhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHH
Confidence 9999999999999887 3667888999999999999999999999999875 3444445555543
No 84
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.75 E-value=5.8e-07 Score=96.46 Aligned_cols=170 Identities=18% Similarity=0.228 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..++..|..++..|+|.+|+..|++.+..+ +.++....+...+|.+++..|+|.+|+..+++.+..+ +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 46789999999999999999999999998774 5678888999999999999999999999999998875 6
Q ss_pred CChhHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHhcCCCChh--------------HHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQ-----------HTELALKYVKRALYLLHLTCGPSHPN--------------TAATYINVA 262 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lG-----------dyeeAley~ekALei~ek~~G~dhp~--------------~a~al~nLA 262 (1124)
+++....+++.+|.+++.+. ...+|+..|+..+..+ ++.+. ++.--+.+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888889999999877653 2346777777766532 22221 223345678
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHH
Q 001206 263 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSV 317 (1124)
Q Consensus 263 ~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAl 317 (1124)
..|...|.|..|+..++.+++.+ ++.+....++..|+..|..+|..+.|.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999999999999876 667778889999999999999988554
No 85
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.75 E-value=1.7e-07 Score=92.45 Aligned_cols=103 Identities=23% Similarity=0.221 Sum_probs=91.4
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
++....++..+|.++...|++++|+.++++++.+ .+....++.++|.++..+|++++|+.+|++++.+
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 5666788999999999999999999999998876 3445778999999999999999999999999875
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 247 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 247 ~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
++.....++++|.+|...|++++|+.+|++++++.
T Consensus 81 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35567788999999999999999999999999875
No 86
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.74 E-value=1.1e-06 Score=111.68 Aligned_cols=174 Identities=10% Similarity=0.063 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+...+..+.+.+.+|+++.|+..|+++++. +|....+...++.++...|++++|+.++++++. .
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-------p 97 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA--------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-------S 97 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-------C
Confidence 3557788899999999999999999999977 344432233888888889999999999999982 1
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
.+.....+..+|.+|..+|+|++|+++|+++++. .|....++..|+.+|...++.++|++.+++++...
T Consensus 98 -~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-- 166 (822)
T PRK14574 98 -MNISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD-- 166 (822)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--
Confidence 1223455666788999999999999999999985 34445666788999999999999999999987764
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 001206 288 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ 339 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~ 339 (1124)
+. ...+..++.++..++++.+|+..++++++. .+++....
T Consensus 167 ------p~-~~~~l~layL~~~~~~~~~AL~~~ekll~~-----~P~n~e~~ 206 (822)
T PRK14574 167 ------PT-VQNYMTLSYLNRATDRNYDALQASSEAVRL-----APTSEEVL 206 (822)
T ss_pred ------cc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHh-----CCCCHHHH
Confidence 21 222344566666678887799999999886 45555443
No 87
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.73 E-value=1.9e-06 Score=112.27 Aligned_cols=169 Identities=11% Similarity=-0.020 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 209 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~ 209 (1124)
..+..+...|...|++++|+.+|.+.... ...|. ..+|..|...|...|++++|.++|.+..... .+ -.
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~------Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~---~g-i~ 576 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSK------NVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAET---HP-ID 576 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc---CC-CC
Confidence 34444555666677777777766665432 11222 3456666666777777777776666654320 01 11
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 001206 210 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 289 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~l 289 (1124)
|+ ..+|+.|-..|.+.|++++|+++|++..+. +......+|+.+...|.+.|++++|+++|++..+.-
T Consensus 577 PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G---- 644 (1060)
T PLN03218 577 PD-HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG---- 644 (1060)
T ss_pred Cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----
Confidence 22 345666666777777777777777665542 112223556666677777777777777776654321
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001206 290 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 324 (1124)
Q Consensus 290 G~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekAL 324 (1124)
-.+. ..+|..|...|.+.|++++|.+++++..
T Consensus 645 --v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 645 --VKPD-EVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred --CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1111 3455666666667777777766666544
No 88
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.73 E-value=3.4e-07 Score=95.28 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=101.8
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
..+..+.+++++|.+|...|++++|+.+|++++.+.. +.+....++.++|.+|..+|++++|+.+|++++.+.
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 102 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-- 102 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 3456778899999999999999999999999998632 334456789999999999999999999999999864
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHc-------CChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 001206 288 LLGPDHIQTAASYHAIAIALSLM-------EAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 347 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~~l-------Gd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~ 347 (1124)
+.....+..+|.+|..+ ++++.|+..++++++++++.+..++..+..+..|+..
T Consensus 103 ------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 163 (172)
T PRK02603 103 ------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKT 163 (172)
T ss_pred ------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHh
Confidence 22345556667776654 5678888899999999888887777777777777754
No 89
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.73 E-value=2.9e-06 Score=104.49 Aligned_cols=128 Identities=17% Similarity=0.174 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 001206 255 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 334 (1124)
Q Consensus 255 a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~d 334 (1124)
...|..++.+|...|+|.+|+.+|-.+...- ....+..|+.+|.+|..+|.+++|+++|++++.+ .++
T Consensus 414 ~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-------~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-----~p~ 481 (895)
T KOG2076|consen 414 VDLYLDLADALTNIGKYKEALRLLSPITNRE-------GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL-----APD 481 (895)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCC
Confidence 4568889999999999999999998766432 2234778999999999999999999999999986 455
Q ss_pred CHHHHHHHHHHHHHHHHhHHHHHHHHhccC--CCchh-hhhcCCCcHHHHHHHHHHHHHHcCChHH
Q 001206 335 DLRTQDAAAWLEYFESKAFEQQEAARNGTR--KPDAS-IASKGHLSVSDLLDYINPSHDTKGRNVS 397 (1124)
Q Consensus 335 h~~t~~a~~~La~l~~k~~e~aeAl~~~~~--~~~~~-~a~k~~~~vaell~~Lg~~y~~qGdyee 397 (1124)
|.. +...|+.+.++.+...++...... .++.. ...........++.....++...|+.++
T Consensus 482 ~~D---~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 482 NLD---ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred chh---hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 544 444455445555555454443222 12211 1112222345566777788888999887
No 90
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=3.2e-06 Score=97.10 Aligned_cols=173 Identities=9% Similarity=0.133 Sum_probs=136.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 001206 136 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERELGLDHPDTMK 214 (1124)
Q Consensus 136 G~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lG-dydeAle~~~KALeI~er~lg~D~p~~a~ 214 (1124)
-.++...+++++|+..+.+++.+ +|....+|...|.++..+| ++.+|+.++.+++.. +|....
T Consensus 44 ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyq 107 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQ 107 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchH
Confidence 33566788999999999999987 6777889999999999998 689999999999876 455677
Q ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 215 SYGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 292 (1124)
Q Consensus 215 ay~nLA~iy~~lGdy--eeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d 292 (1124)
++++.+.++..+|+. ++++.++.+++++ ++....++.+.+.++..+|+|++|++++.++|+..
T Consensus 108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d------- 172 (320)
T PLN02789 108 IWHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED------- 172 (320)
T ss_pred HhHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-------
Confidence 899999999988874 7889999999875 56678899999999999999999999999999874
Q ss_pred cHHHHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 001206 293 HIQTAASYHAIAIALSLM---EAY----PLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 345 (1124)
Q Consensus 293 ~p~~A~a~~nLA~ly~~l---Gd~----eeAle~lekALei~~k~lG~dh~~t~~a~~~L 345 (1124)
+....+++..+.++..+ |.+ ++++.+..+++.+ .+++......+.++
T Consensus 173 -~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-----~P~N~SaW~Yl~~l 226 (320)
T PLN02789 173 -VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-----NPRNESPWRYLRGL 226 (320)
T ss_pred -CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-----CCCCcCHHHHHHHH
Confidence 33356777788877765 333 4677777777765 45555444444433
No 91
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=1.3e-07 Score=104.85 Aligned_cols=124 Identities=25% Similarity=0.313 Sum_probs=105.6
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001206 125 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 204 (1124)
Q Consensus 125 ~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~ 204 (1124)
....|..+-..|.-++..++|.+|+..|.+||.+ .|..+..|.+.|.+|.++|.|+.|++-++.||.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---- 144 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc----
Confidence 3456888999999999999999999999999988 6777889999999999999999999999999998
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 001206 205 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 272 (1124)
Q Consensus 205 lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdye 272 (1124)
+|...++|..||.+|..+|++++|++.|++||++ .|+......+|..+-..+++..
T Consensus 145 ----Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 ----DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ----ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 5778999999999999999999999999999996 3444455555555555544433
No 92
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.71 E-value=6.9e-07 Score=106.59 Aligned_cols=243 Identities=11% Similarity=0.092 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 210 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p 210 (1124)
.+|..+.-++..++|...++..++.|.. ++.....+...|..+..+|+-++|..+.+.++.. ++
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d~ 72 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------DL 72 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccchhHHhccchhhcccchHHHHHHHHHHhcc--------Cc
Confidence 4666777788899999999998888873 4556678889999999999999999999998874 23
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 001206 211 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 290 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG 290 (1124)
....++.-+|.++....+|++|++||+.|+.+ .++...++..|+.+..++++|+-....-.+.|+..
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~----- 139 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR----- 139 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----
Confidence 34568889999999999999999999999986 45567889999999999999998888777777664
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhh
Q 001206 291 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASI 370 (1124)
Q Consensus 291 ~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~ 370 (1124)
+..-..|..+|..+...|++..|...++.-.+.....+.........+...-.....+....++++........ .+
T Consensus 140 ---~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~-~i 215 (700)
T KOG1156|consen 140 ---PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK-QI 215 (700)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh-HH
Confidence 44456788889999999999999998876665543222222222222222222222233333333221111100 00
Q ss_pred hhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 371 ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 371 a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
.+.......-+.++..++++++|...|...+...+.
T Consensus 216 -----~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd 251 (700)
T KOG1156|consen 216 -----VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD 251 (700)
T ss_pred -----HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch
Confidence 011123445567778889999999888776665444
No 93
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.71 E-value=3.8e-07 Score=93.60 Aligned_cols=102 Identities=15% Similarity=0.020 Sum_probs=93.1
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 168 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 247 (1124)
Q Consensus 168 p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~ 247 (1124)
++.....+.+|..++..|++++|..+|+-.+.+ +|.....+++||.++..+|+|.+|+.+|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 667788999999999999999999999988876 5677889999999999999999999999999985
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 248 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 248 G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.++....+.++|.+|...|+.+.|++.|+.|+..+
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 34556789999999999999999999999999998
No 94
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.70 E-value=3.6e-07 Score=93.75 Aligned_cols=102 Identities=12% Similarity=0.029 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~l 205 (1124)
...-..+|.+|..++..|++++|..+|+-...+ ++.....|++||.++..+|+|.+|+..|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 344667889999999999999999999987766 7888999999999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001206 206 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 243 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ 243 (1124)
.++....+.++|.||+..|+.+.|++.|+.|+.++
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 34557789999999999999999999999999986
No 95
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.69 E-value=5.4e-07 Score=93.78 Aligned_cols=114 Identities=19% Similarity=0.210 Sum_probs=90.2
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 166 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 166 d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
.....+.+++.+|.+|...|++++|+.+|++++.+. .+.+....++.++|.+|..+|++++|+.+|++++.+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 101 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--- 101 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 455677899999999999999999999999999874 233445678999999999999999999999999985
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHhcCCC
Q 001206 246 TCGPSHPNTAATYINVAMMEEGLGN-------VHVALRYLHKALKCNQRLLGPD 292 (1124)
Q Consensus 246 ~~G~dhp~~a~al~nLA~iy~~lGd-------yeeAle~lekALei~~k~lG~d 292 (1124)
++.....+.++|.+|..+|+ +++|+.+|++|++++++....+
T Consensus 102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 34445667777888777654 6677777777777766654433
No 96
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.69 E-value=2.3e-06 Score=94.55 Aligned_cols=174 Identities=14% Similarity=0.140 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..++..|..++..|+|++|+..|++++... +..+....+...||.+|+..++|++|+.++++.+... +
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----P 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----c
Confidence 36668889999999999999999999998863 4556777888999999999999999999999999874 7
Q ss_pred CChhHHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHhcCCCCh--------------hHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQ---------------H---TELALKYVKRALYLLHLTCGPSHP--------------NTA 255 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lG---------------d---yeeAley~ekALei~ek~~G~dhp--------------~~a 255 (1124)
+|+....+++.+|.++..++ + ..+|+..|++.+..+ ++.. .++
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHH
Confidence 78899999999999875554 1 245666666666532 1111 123
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 001206 256 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 321 (1124)
Q Consensus 256 ~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~le 321 (1124)
.--..+|..|.+.|.|.-|+.-++.+++-+ ++.+....+++.|+..|..+|..++|.....
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 334567889999999999999999998876 6667788999999999999999999987654
No 97
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.69 E-value=8.8e-07 Score=111.92 Aligned_cols=143 Identities=15% Similarity=0.124 Sum_probs=103.0
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001206 124 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 203 (1124)
Q Consensus 124 ~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er 203 (1124)
.......++..+...+...+++++|+.++..+++. +|....+|+.+|.+|+..+++.+|... .++.+...
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~ 95 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ 95 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc
Confidence 34455677888888999999999999999988766 677888999999999999998887765 55544322
Q ss_pred hc-----------CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 001206 204 EL-----------GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 272 (1124)
Q Consensus 204 ~l-----------g~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdye 272 (1124)
.. -.+++..-.+++.||.||-.+|++++|...|+++|++ .+..+.+++++|..|... +++
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-hHH
Confidence 10 0112233356677777777777777777777777764 255566777777777777 777
Q ss_pred HHHHHHHHHHHHH
Q 001206 273 VALRYLHKALKCN 285 (1124)
Q Consensus 273 eAle~lekALei~ 285 (1124)
+|++++.+|+..+
T Consensus 167 KA~~m~~KAV~~~ 179 (906)
T PRK14720 167 KAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777653
No 98
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.68 E-value=3.6e-06 Score=109.80 Aligned_cols=240 Identities=13% Similarity=0.049 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
...+..+...|...|++++|.++|.+...... ...++ ..+|..|-..|...|++++|+++|++..+. +
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~----gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-----g-- 609 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETH----PIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-----N-- 609 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC----CCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----C--
Confidence 34566777888999999999999998765311 11233 457888889999999999999999887653 2
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
-.....+|+.|...|.+.|++++|+++|++..+. | -.|+ ..+|..|...|...|++++|.++|++.++.-
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G--- 679 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQG--- 679 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---
Confidence 1224568899999999999999999999987652 2 1233 4678889999999999999999999876531
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHhHHHHHHHHhccCCC
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKP 366 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La--~l~~k~~e~aeAl~~~~~~~ 366 (1124)
......+|..|...|.+.|++++|+..|++.... -+.++ .. .+..|. +...+..+.+..+......
T Consensus 680 ----~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~---g~~Pd-vv---tyN~LI~gy~k~G~~eeAlelf~eM~~- 747 (1060)
T PLN03218 680 ----IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI---KLRPT-VS---TMNALITALCEGNQLPKALEVLSEMKR- 747 (1060)
T ss_pred ----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC-HH---HHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 1123467889999999999999999999875432 11222 22 222222 3344444444433321110
Q ss_pred chhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 367 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 408 (1124)
Q Consensus 367 ~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL 408 (1124)
....++. .+|..|-..|.+.|++++|...+.+.++.
T Consensus 748 -----~Gi~Pd~-~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 748 -----LGLCPNT-ITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred -----cCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 0111222 45666668899999999999999887653
No 99
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.67 E-value=3.2e-07 Score=90.52 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=89.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
+|....++..+|.++...|++++|+++|++++.+ ++.....+.++|.+|..+|++++|+.+|++++.+.
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--- 81 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--- 81 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 4556778899999999999999999999998875 34557888999999999999999999999988763
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
+.....++.+|.+|...|++++|+.++++++++
T Consensus 82 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -----PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334677889999999999999999999999986
No 100
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.4e-07 Score=105.71 Aligned_cols=195 Identities=16% Similarity=0.089 Sum_probs=146.6
Q ss_pred hcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001206 122 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 201 (1124)
Q Consensus 122 ~~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~ 201 (1124)
......++..+...|..++.+.+|.+|+..|..|++++ +..+..|.+.+.+|+..|+|++|+-..++.+.+
T Consensus 42 ~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~--------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~- 112 (486)
T KOG0550|consen 42 SQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC--------PDNASYYSNRAATLMMLGRFEEALGDARQSVRL- 112 (486)
T ss_pred cchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC--------ccchhhhchhHHHHHHHHhHhhcccchhhheec-
Confidence 33445678889999999999999999999999999883 455889999999999999999999999998876
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHHHHhcCCC--ChhHHHHHHHHHHHHHHCCCH
Q 001206 202 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL--------YLLHLTCGPS--HPNTAATYINVAMMEEGLGNV 271 (1124)
Q Consensus 202 er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekAL--------ei~ek~~G~d--hp~~a~al~nLA~iy~~lGdy 271 (1124)
.+.....+..++.|+..+++..+|.++|+..- ...+.+.... .|....+...-+.++..+|++
T Consensus 113 -------kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~ 185 (486)
T KOG0550|consen 113 -------KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDY 185 (486)
T ss_pred -------CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccc
Confidence 23344567778888888888888887765321 1112211111 244455556678899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 001206 272 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 345 (1124)
Q Consensus 272 eeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~L 345 (1124)
++|...--..+++. ...+.+++--|.++...++.+.|+.+|++++.+ +++|.....+....
T Consensus 186 ~~a~~ea~~ilkld--------~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-----dpdh~~sk~~~~~~ 246 (486)
T KOG0550|consen 186 DEAQSEAIDILKLD--------ATNAEALYVRGLCLYYNDNADKAINHFQQALRL-----DPDHQKSKSASMMP 246 (486)
T ss_pred hhHHHHHHHHHhcc--------cchhHHHHhcccccccccchHHHHHHHhhhhcc-----ChhhhhHHhHhhhH
Confidence 99988766666553 334667777899999999999999999999986 78877665555433
No 101
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.64 E-value=4.7e-07 Score=86.36 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 001206 214 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 293 (1124)
Q Consensus 214 ~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~ 293 (1124)
.+++.+|..+...|++++|+++|.+++.. .++++....+++.+|.++...|++++|+.+|++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 46889999999999999999999999874 23445557788999999999999999999999999764 455
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 001206 294 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA 341 (1124)
Q Consensus 294 p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a 341 (1124)
+....++..+|.++..+|++++|+.+++++++. .+++.....+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~ 115 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR-----YPGSSAAKLA 115 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH-----CcCChhHHHH
Confidence 555678999999999999999999999999886 3555544433
No 102
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.64 E-value=2.2e-06 Score=86.76 Aligned_cols=136 Identities=22% Similarity=0.149 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+...|......+..+++..+...+.+.+.- .+..+....+...+|.+++..|++++|...|++++... .
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~ 79 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----P 79 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----C
Confidence 3556666666777899999988777766654 24455667889999999999999999999999998752 3
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 282 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekAL 282 (1124)
+......+...||.++..+|+|++|+..++.. .+.......+..+|.+|..+|++++|+..|++||
T Consensus 80 d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 80 DPELKPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 33444567889999999999999999998652 1334456677889999999999999999999885
No 103
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.63 E-value=5.8e-06 Score=98.60 Aligned_cols=230 Identities=17% Similarity=0.060 Sum_probs=146.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001206 133 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 212 (1124)
Q Consensus 133 l~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~ 212 (1124)
+..-.+.+...+++.|..+|.++... ..+.++|+.-+.+.+.+++.++|+.+++++|..+ |+.
T Consensus 622 laavKle~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f 684 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDF 684 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------Cch
Confidence 33344555666777777777776543 2345667777777777777777777777777763 455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 213 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 292 (1124)
Q Consensus 213 a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d 292 (1124)
...|..+|.++..+++.+.|.+.|...+.. .|...-.+..|+.+-...|+.-+|...|+++.-.
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ildrarlk-------- 748 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK-------- 748 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--------
Confidence 667777777777777777777777766553 3444556667777777777777777777776532
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhh
Q 001206 293 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIAS 372 (1124)
Q Consensus 293 ~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~ 372 (1124)
.|.....|...-.+-...|..+.|...+.+||+-+ +.....+....||.---+.......++.....
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-----p~sg~LWaEaI~le~~~~rkTks~DALkkce~-------- 815 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQEC-----PSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH-------- 815 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccchhHHHHHHhccCcccchHHHHHHHhccC--------
Confidence 23344555555566667788888888777777754 22222222223332111111112222221111
Q ss_pred cCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 373 KGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 373 k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
. ..++..++..+....++++|+++|.+++++.+.++
T Consensus 816 --d---phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 816 --D---PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred --C---chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 1 24577889999999999999999999999988877
No 104
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1.9e-05 Score=93.89 Aligned_cols=274 Identities=14% Similarity=0.014 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------------HHhcCCCCchhHHHHHHHHHHHHhcCCH
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKL-----------------------VAVCGPYHRMTAGAYSLLAVVLYHTGDF 187 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~-----------------------e~i~G~d~p~~A~ay~nLG~ly~~lGdy 187 (1124)
.+.-.|.+++..|+|++|+..|+..+.-- .+............++|.|.++...|+|
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 45566889999999999999998874320 1111112233567899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------------
Q 001206 188 NQATIYQQKALDINERELGLDH-------PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH---------------- 244 (1124)
Q Consensus 188 deAle~~~KALeI~er~lg~D~-------p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~e---------------- 244 (1124)
.+|++.+++|+.++++.+..+. .++..+...|+.++..+|+.++|...|...+....
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~ 271 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVAL 271 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhh
Confidence 9999999999999887654322 23566788999999999999999999988776210
Q ss_pred ----------------HhcCC---------CChhHHHHHHHHHHHHHHCCCHHHHHHHH---------------------
Q 001206 245 ----------------LTCGP---------SHPNTAATYINVAMMEEGLGNVHVALRYL--------------------- 278 (1124)
Q Consensus 245 ----------------k~~G~---------dhp~~a~al~nLA~iy~~lGdyeeAle~l--------------------- 278 (1124)
...+. .+...-.++.|.+.+.+..+..+.+.+..
T Consensus 272 ~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~ 351 (652)
T KOG2376|consen 272 SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATK 351 (652)
T ss_pred ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHH
Confidence 00000 01111234555555555444444433221
Q ss_pred ------HHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHH
Q 001206 279 ------HKALKCNQRLLGPDHIQT-AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP--DDLRTQDAAAWLEYFE 349 (1124)
Q Consensus 279 ------ekALei~~k~lG~d~p~~-A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~--dh~~t~~a~~~La~l~ 349 (1124)
.++.+...... ..++.. ..+...++.+...+|+++.|+..+...+......+.. ..|.+..+...|.+-.
T Consensus 352 ~~~~~~~ka~e~L~~~~-~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~ 430 (652)
T KOG2376|consen 352 VREKKHKKAIELLLQFA-DGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKI 430 (652)
T ss_pred HHHHHHhhhHHHHHHHh-ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhc
Confidence 11222221111 223322 5567778889999999999999888555443333322 3344544444443321
Q ss_pred HHhHHH----HHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 350 SKAFEQ----QEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 350 ~k~~e~----aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
...... .+++....... ........++..++....+.|+-++|...+++.++....
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~------t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQ------TGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN 490 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhc------ccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc
Confidence 111111 11111111111 111345567778888888889999999999998886554
No 105
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.62 E-value=4.1e-07 Score=105.88 Aligned_cols=96 Identities=22% Similarity=0.239 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 210 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p 210 (1124)
.+...|..++..|+|++|+.+|.+++.+ .+....+|.++|.+|..+|++++|+.++++|+.+ .|
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P 67 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DP 67 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------Cc
Confidence 4677788999999999999999999987 5666789999999999999999999999999997 35
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 211 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
....+|+++|.+|+.+|+|++|+.+|++++.+
T Consensus 68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 56778999999999999999999999999986
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.60 E-value=7.4e-07 Score=97.25 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=126.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001206 133 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 212 (1124)
Q Consensus 133 l~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~ 212 (1124)
...+..+...|+-+++..+..+++.. ++.....+..+|......|+|.+|+..++++..+ .|..
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d 133 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTD 133 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCC
Confidence 55666777888888888887776533 3444455666999999999999999999999886 4566
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 213 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 292 (1124)
Q Consensus 213 a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d 292 (1124)
..+++.+|.+|.+.|++++|..-|.+++++. +....+++|||..|.-.|+++.|..++..+...- .
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-----~- 199 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-----A- 199 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-----C-
Confidence 8899999999999999999999999999974 2334678999999999999999999998876532 2
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 001206 293 HIQTAASYHAIAIALSLMEAYPLSVQHEQ 321 (1124)
Q Consensus 293 ~p~~A~a~~nLA~ly~~lGd~eeAle~le 321 (1124)
.-..+..+|+.+...+|++++|.....
T Consensus 200 --ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 200 --ADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred --CchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 224677899999999999999977543
No 107
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.60 E-value=7.8e-07 Score=84.84 Aligned_cols=104 Identities=20% Similarity=0.162 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 172 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 251 (1124)
Q Consensus 172 ~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dh 251 (1124)
.+++.+|..+...|++++|+.+|++++... ++++....+++.+|.+++..|++++|+.+|++++.. .+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 578999999999999999999999998752 444555778999999999999999999999999875 2345
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 252 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 252 p~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
+....++..+|.++..+|++++|+.+|+++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 5567789999999999999999999999999875
No 108
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.57 E-value=2.9e-06 Score=107.01 Aligned_cols=236 Identities=10% Similarity=-0.036 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------------------------hcCCCCchhHHHHHHHHHH
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVA------------------------------VCGPYHRMTAGAYSLLAVV 180 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~------------------------------i~G~d~p~~A~ay~nLG~l 180 (1124)
.+..+...|...|++++|+.+|++.+..-.. ..|- .....++..|...
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~--~~d~~~~n~Li~~ 268 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV--VGDTFVSCALIDM 268 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC--CccceeHHHHHHH
Confidence 3555566777888888888888876542000 0000 0011234556666
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-----------
Q 001206 181 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP----------- 249 (1124)
Q Consensus 181 y~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~----------- 249 (1124)
|...|++++|...|++.. .....+|+.|...|...|++++|+++|++....- ..+
T Consensus 269 y~k~g~~~~A~~vf~~m~-----------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g---~~pd~~t~~~ll~a 334 (697)
T PLN03081 269 YSKCGDIEDARCVFDGMP-----------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG---VSIDQFTFSIMIRI 334 (697)
T ss_pred HHHCCCHHHHHHHHHhCC-----------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHH
Confidence 777777777766665421 0123455666666666666666666665543310 000
Q ss_pred --------------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 001206 250 --------------------SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL 309 (1124)
Q Consensus 250 --------------------dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~ 309 (1124)
.......+++.|..+|.+.|++++|.+.|++..+ + ...+|..|...|.+
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~----d~~t~n~lI~~y~~ 403 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-------K----NLISWNALIAGYGN 403 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-------C----CeeeHHHHHHHHHH
Confidence 0011123344455555555555555555544321 1 13457777788888
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHH
Q 001206 310 MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH 389 (1124)
Q Consensus 310 lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y 389 (1124)
.|+.++|++.|++..+. -..++.......+. ++...+..+.+..+...... ..+.......|..+..+|
T Consensus 404 ~G~~~~A~~lf~~M~~~---g~~Pd~~T~~~ll~--a~~~~g~~~~a~~~f~~m~~------~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 404 HGRGTKAVEMFERMIAE---GVAPNHVTFLAVLS--ACRYSGLSEQGWEIFQSMSE------NHRIKPRAMHYACMIELL 472 (697)
T ss_pred cCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHH--HHhcCCcHHHHHHHHHHHHH------hcCCCCCccchHhHHHHH
Confidence 88888888888765432 12233221111111 12222333333333221110 000001123466667777
Q ss_pred HHcCChHHHHHHHHH
Q 001206 390 DTKGRNVSTLKRKTY 404 (1124)
Q Consensus 390 ~~qGdyeeAl~~yek 404 (1124)
.+.|++++|.+.+++
T Consensus 473 ~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 473 GREGLLDEAYAMIRR 487 (697)
T ss_pred HhcCCHHHHHHHHHH
Confidence 778888887777654
No 109
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.56 E-value=2.6e-06 Score=107.43 Aligned_cols=240 Identities=12% Similarity=0.013 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH------
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN------ 201 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~------ 201 (1124)
+...+..+...|...|++++|+.+|++.... ...++ ..+|..+..+|...|++++|...+...++.-
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~ 361 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDS------GVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee
Confidence 3456677778888899999999998886543 11122 2366667777777777777777666554420
Q ss_pred ----------------------HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 001206 202 ----------------------ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 259 (1124)
Q Consensus 202 ----------------------er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~ 259 (1124)
++... + ...+|+.|...|.+.|+.++|+++|++.+.. | -.|+ ..+|.
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~---~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g-~~Pd-~~T~~ 430 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPR---K-NLISWNALIAGYGNHGRGTKAVEMFERMIAE-----G-VAPN-HVTFL 430 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCC---C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-CCCC-HHHHH
Confidence 00000 1 1223444444555555555555555544321 1 0111 23344
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 001206 260 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ 339 (1124)
Q Consensus 260 nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~ 339 (1124)
.+...+...|++++|.++|+...+.. |- .| ....|..+..+|.+.|++++|.+.+++.- ..+ +..++
T Consensus 431 ~ll~a~~~~g~~~~a~~~f~~m~~~~----g~-~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~------~~p-~~~~~ 497 (697)
T PLN03081 431 AVLSACRYSGLSEQGWEIFQSMSENH----RI-KP-RAMHYACMIELLGREGLLDEAYAMIRRAP------FKP-TVNMW 497 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhc----CC-CC-CccchHhHHHHHHhcCCHHHHHHHHHHCC------CCC-CHHHH
Confidence 45555555555555555555543321 10 11 12345566667777777777766654320 111 12221
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 340 DAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 407 (1124)
Q Consensus 340 ~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALk 407 (1124)
.++.. ++...+..+.++.......... +.....|..|..+|...|++++|.+.+++..+
T Consensus 498 ~~Ll~-a~~~~g~~~~a~~~~~~l~~~~--------p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 498 AALLT-ACRIHKNLELGRLAAEKLYGMG--------PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHH-HHHHcCCcHHHHHHHHHHhCCC--------CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 11111 1222233333333222211111 11224577889999999999999999976543
No 110
>PLN02789 farnesyltranstransferase
Probab=98.53 E-value=4.3e-06 Score=96.04 Aligned_cols=186 Identities=11% Similarity=0.056 Sum_probs=139.7
Q ss_pred ChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHH
Q 001206 125 SSADGRQLLESSKTALDKG-KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF--NQATIYQQKALDIN 201 (1124)
Q Consensus 125 ~s~~Ar~Ll~lG~~yl~qG-dyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdy--deAle~~~KALeI~ 201 (1124)
......++...+.++...| ++++|+.++.+++.. ++....+|+..+.++..+|+. .+++.++.+++.+
T Consensus 67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~- 137 (320)
T PLN02789 67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL- 137 (320)
T ss_pred CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh-
Confidence 3344556677777888787 689999999999876 567777899999999988874 6788888888876
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---CCH----HHH
Q 001206 202 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL---GNV----HVA 274 (1124)
Q Consensus 202 er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~l---Gdy----eeA 274 (1124)
++....++.+.+.++..+|+|++|++++.++|++ ++....++++.+.++... |.+ +++
T Consensus 138 -------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 138 -------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--------DVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred -------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 4667889999999999999999999999999985 345567888888888766 333 467
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 001206 275 LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES 350 (1124)
Q Consensus 275 le~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~----lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~ 350 (1124)
+.+..+++.+. |....+++.++.++.. +++..+|+..+.++++. .+....++.+|+.+..
T Consensus 203 l~y~~~aI~~~--------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--------~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 203 LKYTIDAILAN--------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--------DSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHHhC--------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--------cCCcHHHHHHHHHHHH
Confidence 88888887764 3445678888888887 45566677777665541 2333456666665544
No 111
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.53 E-value=1.8e-05 Score=100.99 Aligned_cols=258 Identities=13% Similarity=0.016 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
...+..+|..+..+|+|++|+++|+++++. +|....++..|+.+|...+++++|+..+++++...
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d------- 166 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD------- 166 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC-------
Confidence 455666788999999999999999999987 45556788889999999999999999999987652
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHH-------------
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVAL------------- 275 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAl------------- 275 (1124)
+. ...+..++.++...+++.+|++.|+++++.. |.....+..+..++...|-...|+
T Consensus 167 -p~-~~~~l~layL~~~~~~~~~AL~~~ekll~~~--------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~ 236 (822)
T PRK14574 167 -PT-VQNYMTLSYLNRATDRNYDALQASSEAVRLA--------PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAE 236 (822)
T ss_pred -cc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHH
Confidence 32 2223555666666788877999999988731 111111111111111111111111
Q ss_pred ----------------------------HHHHHHHHHHHHhc--------------------------------------
Q 001206 276 ----------------------------RYLHKALKCNQRLL-------------------------------------- 289 (1124)
Q Consensus 276 ----------------------------e~lekALei~~k~l-------------------------------------- 289 (1124)
..++++|.....++
T Consensus 237 ~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~ 316 (822)
T PRK14574 237 HYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE 316 (822)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 11112222222211
Q ss_pred -----CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccC
Q 001206 290 -----GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTR 364 (1124)
Q Consensus 290 -----G~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~ 364 (1124)
+..-| ..+...+|..|...++.++|+..|++++.---.................+++..+.++.++.+.....
T Consensus 317 ~l~~~~~~~P--~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~ 394 (822)
T PRK14574 317 AMEAEGYKMP--DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYS 394 (822)
T ss_pred HhhhcCCCCC--HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 11111 12344567777777777777777776654211000001111111233455667777777776654333
Q ss_pred CCch-h------hhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 365 KPDA-S------IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 365 ~~~~-~------~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
...+ . .....++++.+....++.++...|++.+|...+++.+...+...
T Consensus 395 ~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~ 450 (822)
T PRK14574 395 EQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQ 450 (822)
T ss_pred hcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 2111 1 11245667889999999999999999999999999887766443
No 112
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=4.5e-05 Score=82.62 Aligned_cols=226 Identities=17% Similarity=0.056 Sum_probs=159.6
Q ss_pred CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001206 165 PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 244 (1124)
Q Consensus 165 ~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~e 244 (1124)
++....+..|..-+.+|....+|++|...+.+|.+-++.. ......+.+|-..|.+...+..+.++..+|++|..++.
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV 102 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4444556677788889999999999999999999988763 33345678899999999999999999999999999998
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001206 245 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 324 (1124)
Q Consensus 245 k~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekAL 324 (1124)
+.. .|+.+..-..-|--....-+.++|+++|++++.+.+.- .........+..++++|.....|.+|-..+.+-.
T Consensus 103 E~G---spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~ 177 (308)
T KOG1585|consen 103 ECG---SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEG 177 (308)
T ss_pred HhC---CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence 864 44444433333444456678999999999999998542 2233345667788999999999999999888877
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHH
Q 001206 325 QILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRK 402 (1124)
Q Consensus 325 ei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~y 402 (1124)
-+..+.-.-...-.......|.++....+.+++...+.--...... .+.-...+.+|=..| ..|+.+++.+.+
T Consensus 178 ~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~----~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 178 VAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL----KSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred hHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc----ChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 7666544334444445555667888888888887765432222111 112233444554444 458887765544
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.51 E-value=1.5e-06 Score=94.99 Aligned_cols=135 Identities=20% Similarity=0.177 Sum_probs=114.4
Q ss_pred hcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001206 122 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 201 (1124)
Q Consensus 122 ~~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~ 201 (1124)
......+...+..+|...+..|+|.+|+..|+++..+ .|.-..+|+.+|.+|.+.|++++|..-|.+++++.
T Consensus 93 ~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~ 164 (257)
T COG5010 93 AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA 164 (257)
T ss_pred hccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc
Confidence 3444455566667899999999999999999999876 56678899999999999999999999999999985
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001206 202 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 280 (1124)
Q Consensus 202 er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lek 280 (1124)
+.-..+++|||..|.-.|+++.|..++..+... .+....+..||+.+...+|++++|.....+
T Consensus 165 --------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 165 --------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--------PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred --------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 233567899999999999999999999998752 333467789999999999999999876554
No 114
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=7.9e-07 Score=98.67 Aligned_cols=122 Identities=22% Similarity=0.265 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 169 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 248 (1124)
Q Consensus 169 ~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G 248 (1124)
..+.-+-.-|.-++..++|.+|+..|.+||.+ .|..+..|.|-|.+|.++|+|+.|++-++.|+.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------ 144 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------ 144 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------
Confidence 34556667788888999999999999999998 4666888999999999999999999999999986
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChH
Q 001206 249 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 314 (1124)
Q Consensus 249 ~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~e 314 (1124)
+|....+|..||.+|..+|+|++|++.|++||++. ++ ......+|..+-.++++-.
T Consensus 145 --Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld-----P~---Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 --DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD-----PD---NESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred --ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC-----CC---cHHHHHHHHHHHHHhcCCC
Confidence 68889999999999999999999999999999985 33 3344455555555554444
No 115
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.49 E-value=1.1e-06 Score=102.35 Aligned_cols=96 Identities=22% Similarity=0.226 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001206 174 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 253 (1124)
Q Consensus 174 y~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~ 253 (1124)
+...|..++..|+|++|+.+|++|+.+ .|....+|.++|.+|..+|++++|+.++++|+.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 556788899999999999999999987 3455778999999999999999999999999986 345
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 254 TAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 254 ~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
...+++++|.+|..+|+|++|+.+|++++++.
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 57789999999999999999999999999875
No 116
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.48 E-value=9.4e-06 Score=82.22 Aligned_cols=123 Identities=18% Similarity=0.093 Sum_probs=97.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 001206 183 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 262 (1124)
Q Consensus 183 ~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA 262 (1124)
..++...+...+++.+.- .++.+....+...+|.+++..|++++|...|+.++.. .++......+...||
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APDPELKPLARLRLA 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHHHHHHHHHHH
Confidence 467788777666665553 2445556788899999999999999999999999874 234444567788999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001206 263 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 324 (1124)
Q Consensus 263 ~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekAL 324 (1124)
.++..+|+|++|+..++.. .+.......+..+|.+|..+|++++|+..|++|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999998652 2233456677889999999999999999999874
No 117
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=9.7e-05 Score=88.06 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=116.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH----------
Q 001206 132 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN---------- 201 (1124)
Q Consensus 132 Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~---------- 201 (1124)
.|+.+.+.++.++.++|+..++- + +...-.++...|.+++++|+|++|+..|+..+.--
T Consensus 82 ~fEKAYc~Yrlnk~Dealk~~~~-~----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~ 150 (652)
T KOG2376|consen 82 FFEKAYCEYRLNKLDEALKTLKG-L----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRA 150 (652)
T ss_pred hHHHHHHHHHcccHHHHHHHHhc-c----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 37889999999999999998871 1 22234577888999999999999999998763210
Q ss_pred -------------HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHH
Q 001206 202 -------------ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH-------PNTAATYINV 261 (1124)
Q Consensus 202 -------------er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dh-------p~~a~al~nL 261 (1124)
.+.......+....++|.|.++...|+|.+|++.+++|+.++++.+..+. .++..+...|
T Consensus 151 nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl 230 (652)
T KOG2376|consen 151 NLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL 230 (652)
T ss_pred HHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence 01111122336778999999999999999999999999999877554321 2346678899
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 001206 262 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAI 305 (1124)
Q Consensus 262 A~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ 305 (1124)
+.++..+|+.++|...|...+... -.|.+..+.+-+||-.
T Consensus 231 ayVlQ~~Gqt~ea~~iy~~~i~~~----~~D~~~~Av~~NNLva 270 (652)
T KOG2376|consen 231 AYVLQLQGQTAEASSIYVDIIKRN----PADEPSLAVAVNNLVA 270 (652)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhc----CCCchHHHHHhcchhh
Confidence 999999999999999999887653 1344444555444443
No 118
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7.1e-06 Score=93.80 Aligned_cols=180 Identities=17% Similarity=0.151 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 209 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~ 209 (1124)
..++--+...+...+|..|+.+.+++++. ++....+|...|.++..+++.++|+..|+.|..+.
T Consensus 301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-------- 364 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-------- 364 (564)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc--------
Confidence 34455556667777888888888887765 34455677777888888888888888888777663
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------hcC----------------------CCChhHHHHHHHH
Q 001206 210 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL------TCG----------------------PSHPNTAATYINV 261 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek------~~G----------------------~dhp~~a~al~nL 261 (1124)
|....+|..|-.+|...|++.+|+..-+.++..+.. +.| .-.|....+-..+
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~ 444 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLI 444 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHH
Confidence 455677777777777777777777666655543321 111 1245566677788
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 001206 262 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ 339 (1124)
Q Consensus 262 A~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~ 339 (1124)
|.++...|.+..++.+++++|..+ .+ ...+..||.++...+.+.+|..+|..|+.+ .+.+..++
T Consensus 445 AEL~~~Eg~~~D~i~LLe~~L~~~-----~D----~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~-----dP~~~~sl 508 (564)
T KOG1174|consen 445 AELCQVEGPTKDIIKLLEKHLIIF-----PD----VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ-----DPKSKRTL 508 (564)
T ss_pred HHHHHhhCccchHHHHHHHHHhhc-----cc----cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----CccchHHH
Confidence 999999999999999999998875 22 245677899999999999999999999876 45544443
No 119
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=4.2e-05 Score=82.81 Aligned_cols=193 Identities=15% Similarity=0.023 Sum_probs=146.6
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001206 125 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 204 (1124)
Q Consensus 125 ~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~ 204 (1124)
+..-+..|...+..|....+|++|..++.+|.+-++.. ..-...+.+|-..|.+...+..+.++..+|+||..++.+.
T Consensus 27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 33445566677788888999999999999999887754 2233457788899999999999999999999999999875
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001206 205 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 205 lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei 284 (1124)
. .|+++..-..-|.-....-+.++|+.+|++++.+.+.- .........+..++.+|....+|++|...+.+-..+
T Consensus 105 G---spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 105 G---SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred C---CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence 3 45555555555555667789999999999999998762 233345567778899999999999999999887776
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 285 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 285 ~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
..+.- ........+..+-.+|....||..|..+++.+.++
T Consensus 180 ~~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 180 ADKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 65542 22223344555556667778999999999988765
No 120
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=6.4e-05 Score=91.40 Aligned_cols=116 Identities=19% Similarity=0.214 Sum_probs=81.2
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HHHHHhcCCCChhHH----------HHHHHHHHHHHHcCCHHHH
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL----DINERELGLDHPDTM----------KSYGDLAVFYYRLQHTELA 232 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KAL----eI~er~lg~D~p~~a----------~ay~nLA~iy~~lGdyeeA 232 (1124)
....-.+|++.|.-+...+|...|++||+|+- ++.+-+ . ++|..+ ..|...|..+...|+.+.|
T Consensus 854 RiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL-~-e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA 931 (1416)
T KOG3617|consen 854 RIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML-K-EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA 931 (1416)
T ss_pred ceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH-H-hChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence 33455689999999999999999999999862 222111 1 112111 3455678888899999999
Q ss_pred HHHHHHHHHHHHHh-----cCCCC--------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001206 233 LKYVKRALYLLHLT-----CGPSH--------PNTAATYINVAMMEEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 233 ley~ekALei~ek~-----~G~dh--------p~~a~al~nLA~iy~~lGdyeeAle~lekALei 284 (1124)
+.+|..|-+.+... .|.-. .....+.+.||..|...|++.+|..+|.+|-.+
T Consensus 932 l~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 932 LSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99999998755431 12111 112346778999999999999999998876543
No 121
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.39 E-value=1.2e-05 Score=99.70 Aligned_cols=234 Identities=13% Similarity=0.009 Sum_probs=169.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001206 142 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 221 (1124)
Q Consensus 142 qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~ 221 (1124)
+.+...|+..|-+++++ ++..+.+|..||.+|+..-|...|..+|++|.++ ++..+.+.-.++.
T Consensus 471 rK~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~ad 534 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRL--------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASAD 534 (1238)
T ss_pred hhhHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHH
Confidence 44578888888888876 6788999999999999999999999999999887 3456777788999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001206 222 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 301 (1124)
Q Consensus 222 iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~ 301 (1124)
.|.+..+++.|....-++-+.... ......+..+|..|...+++..|+..|+.|++.. |....++.
T Consensus 535 tyae~~~we~a~~I~l~~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--------PkD~n~W~ 600 (1238)
T KOG1127|consen 535 TYAEESTWEEAFEICLRAAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--------PKDYNLWL 600 (1238)
T ss_pred HhhccccHHHHHHHHHHHhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcCC--------chhHHHHH
Confidence 999999999999885444332111 1112334458999999999999999999999764 56678999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCc-hhhhhcCCCcHHH
Q 001206 302 AIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD-ASIASKGHLSVSD 380 (1124)
Q Consensus 302 nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~-~~~a~k~~~~vae 380 (1124)
.||.+|...|+|..|++.|.+|..+ .+++. ......+.+.+..++..++.......+. ...........++
T Consensus 601 gLGeAY~~sGry~~AlKvF~kAs~L-----rP~s~---y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE 672 (1238)
T KOG1127|consen 601 GLGEAYPESGRYSHALKVFTKASLL-----RPLSK---YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAE 672 (1238)
T ss_pred HHHHHHHhcCceehHHHhhhhhHhc-----CcHhH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 9999999999999999999998765 34443 3333333334444444433322111111 0111222346778
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 381 LLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 381 ll~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
.+-.++..+..+|=+..|..+++++++.+--..
T Consensus 673 ~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 673 SVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 888888888889999999999999888765443
No 122
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.38 E-value=7.2e-05 Score=82.80 Aligned_cols=174 Identities=18% Similarity=0.161 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 170 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 249 (1124)
Q Consensus 170 ~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~ 249 (1124)
....++..|..+...|+|++|+..|++.+... +..+....+...||.+|+++++|++|+.+|++.+.. -+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----Cc
Confidence 45668889999999999999999999998864 455667778899999999999999999999999986 46
Q ss_pred CChhHHHHHHHHHHHHHHCC---------------C---HHHHHHHHHHHHHHHHHhcCCCcHHHHHH------------
Q 001206 250 SHPNTAATYINVAMMEEGLG---------------N---VHVALRYLHKALKCNQRLLGPDHIQTAAS------------ 299 (1124)
Q Consensus 250 dhp~~a~al~nLA~iy~~lG---------------d---yeeAle~lekALei~~k~lG~d~p~~A~a------------ 299 (1124)
+|+....+++.+|.++..++ + ..+|+..|++.++.+ +++.....+
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHH
Confidence 78999999999998875554 2 235666666666543 333332222
Q ss_pred --HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCc
Q 001206 300 --YHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLS 377 (1124)
Q Consensus 300 --~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~ 377 (1124)
-+.+|..|.+.|.|..|+.-++..++-+ ++...
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y---------------------------------------------p~t~~ 210 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDY---------------------------------------------PDTQA 210 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHC---------------------------------------------CCCch
Confidence 2344555555555555555544444322 11223
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHH
Q 001206 378 VSDLLDYINPSHDTKGRNVSTLKRKT 403 (1124)
Q Consensus 378 vaell~~Lg~~y~~qGdyeeAl~~ye 403 (1124)
..+.+..+..+|...|..++|..+..
T Consensus 211 ~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 211 TRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45677888888888888888877654
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=2.9e-05 Score=91.01 Aligned_cols=118 Identities=18% Similarity=0.174 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001206 133 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 212 (1124)
Q Consensus 133 l~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~ 212 (1124)
|..+..++..|++++|+..++..+.. .|.....+...+.++...++..+|.+.+++++.+ .|..
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------~P~~ 373 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--------DPNS 373 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCc
Confidence 33344444444444444444442221 2333344444455555555555555555555443 1222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 001206 213 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA 274 (1124)
Q Consensus 213 a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeA 274 (1124)
.....++|.+|+..|++.+|+.++++.+. +.|+....|..||..|..+|+..+|
T Consensus 374 ~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 374 PLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred cHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHH
Confidence 33344455555555555555444444432 2333344444455555544444433
No 124
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.37 E-value=2.3e-06 Score=74.93 Aligned_cols=96 Identities=36% Similarity=0.532 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 173 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 252 (1124)
Q Consensus 173 ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp 252 (1124)
+++.+|.++...|++++|+.++++++.+. +....++..+|.++...+++++|+.+|++++.+. +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 57889999999999999999999998763 2233678899999999999999999999998752 2
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001206 253 NTAATYINVAMMEEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 253 ~~a~al~nLA~iy~~lGdyeeAle~lekALei 284 (1124)
....++..+|.++...|++++|..++.+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 22367889999999999999999999988764
No 125
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.37 E-value=2.9e-05 Score=83.36 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 212 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 291 (1124)
Q Consensus 212 ~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~ 291 (1124)
....++..|..++..|+|.+|+..|++.+..+ +.++....+.+.+|.++...|+|++|+..|++.+... +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 45678899999999999999999999988753 4577788899999999999999999999999999876 7
Q ss_pred CcHHHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001206 292 DHIQTAASYHAIAIALSLME-----------AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR 360 (1124)
Q Consensus 292 d~p~~A~a~~nLA~ly~~lG-----------d~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~ 360 (1124)
.++....+++.+|.++..+. ...+|+..|++.++.+ |+.+....+...+..+.....+
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~------ 142 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAE------ 142 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHH------
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHH------
Confidence 78888889999999876543 2335666666555543 5666666666666554332221
Q ss_pred hccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 361 NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 361 ~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
--..+|..|.+.|+|..|+..++.+++-.+.
T Consensus 143 --------------------~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~ 173 (203)
T PF13525_consen 143 --------------------HELYIARFYYKRGKYKAAIIRFQYVIENYPD 173 (203)
T ss_dssp --------------------HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT
T ss_pred --------------------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 1234677778888888888888777766554
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=5.3e-06 Score=100.43 Aligned_cols=165 Identities=20% Similarity=0.250 Sum_probs=136.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001206 136 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 215 (1124)
Q Consensus 136 G~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~a 215 (1124)
+..|...||+-.=..+|++|.++.... .+++.+.+|...+..++|.+|..+++.++++ .+....+
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~ 521 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGT 521 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhH
Confidence 446667777777777888888775432 4557778888888899999999999999988 4667788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 001206 216 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 295 (1124)
Q Consensus 216 y~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~ 295 (1124)
|+++|.+...+++++.|.++|.+++.+ .|+...+++||+..|...++-.+|...+++|+++.. .+.
T Consensus 522 wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-----~~w- 587 (777)
T KOG1128|consen 522 WFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-----QHW- 587 (777)
T ss_pred HHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-----CCC-
Confidence 999999999999999999999999874 567789999999999999999999999999998752 222
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 001206 296 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 331 (1124)
Q Consensus 296 ~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~l 331 (1124)
.++.|.-.+..+.|.+++|+..|++.+.+.+...
T Consensus 588 --~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 588 --QIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred --eeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 4566667778899999999999999988876654
No 127
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.33 E-value=4e-06 Score=73.41 Aligned_cols=96 Identities=34% Similarity=0.471 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 210 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p 210 (1124)
.++.+|..++..|++++|+.+|++++... +....++..+|.++...+++++|+.++++++.+. +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 46778899999999999999999998762 2334788999999999999999999999998863 2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 211 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
....++..+|.++...|++++|..++.+++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 22367889999999999999999999998764
No 128
>PLN03077 Protein ECB2; Provisional
Probab=98.32 E-value=6.5e-05 Score=97.05 Aligned_cols=165 Identities=14% Similarity=0.079 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 213 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 292 (1124)
Q Consensus 213 a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d 292 (1124)
..+|+.|...|...|+.++|+++|++..+. |. .|+ ..++..+-..|...|++++|.++|++..+.. | -
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g~-~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~----g-i 621 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVES-----GV-NPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKY----S-I 621 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHh----C-C
Confidence 346777888888888888888888886642 21 222 3345556667888999999999998776433 1 1
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhh
Q 001206 293 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIAS 372 (1124)
Q Consensus 293 ~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~ 372 (1124)
.| ....|..+..+|.+.|++++|.+++++.- ..+ +..++.++..- +...+..+.++.........
T Consensus 622 ~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~------~~p-d~~~~~aLl~a-c~~~~~~e~~e~~a~~l~~l------ 686 (857)
T PLN03077 622 TP-NLKHYACVVDLLGRAGKLTEAYNFINKMP------ITP-DPAVWGALLNA-CRIHRHVELGELAAQHIFEL------ 686 (857)
T ss_pred CC-chHHHHHHHHHHHhCCCHHHHHHHHHHCC------CCC-CHHHHHHHHHH-HHHcCChHHHHHHHHHHHhh------
Confidence 22 23678888999999999999988877531 122 23333333221 22222333322221111111
Q ss_pred cCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001206 373 KGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 406 (1124)
Q Consensus 373 k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekAL 406 (1124)
.+.....|..|+.+|...|++++|.+..+...
T Consensus 687 --~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 687 --DPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred --CCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 11223568889999999999999988875543
No 129
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=7.4e-06 Score=99.19 Aligned_cols=220 Identities=12% Similarity=0.083 Sum_probs=116.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001206 133 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 212 (1124)
Q Consensus 133 l~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~ 212 (1124)
..++..++..|-...|+..|++.- .+.....||...|+..+|....++-++ .+..
T Consensus 402 ~~laell~slGitksAl~I~Erle----------------mw~~vi~CY~~lg~~~kaeei~~q~le---------k~~d 456 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE----------------MWDPVILCYLLLGQHGKAEEINRQELE---------KDPD 456 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH----------------HHHHHHHHHHHhcccchHHHHHHHHhc---------CCCc
Confidence 345667777777777777665532 344555666666666666655544433 1223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 213 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 292 (1124)
Q Consensus 213 a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d 292 (1124)
...|..||.+....- +|++|.++.... .+.+...+|......++|.+|.++++.++++.
T Consensus 457 ~~lyc~LGDv~~d~s-------~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n------- 515 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPS-------LYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEIN------- 515 (777)
T ss_pred chhHHHhhhhccChH-------HHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhcC-------
Confidence 344555554444333 444444433221 12334445555555677777777777776654
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhh
Q 001206 293 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIAS 372 (1124)
Q Consensus 293 ~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~ 372 (1124)
+....+|+.+|.++.+++++..|.++|..++.+ .++|... ..+|...+....+..++......+....
T Consensus 516 -plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL-----~Pd~~ea---WnNls~ayi~~~~k~ra~~~l~EAlKcn--- 583 (777)
T KOG1128|consen 516 -PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL-----EPDNAEA---WNNLSTAYIRLKKKKRAFRKLKEALKCN--- 583 (777)
T ss_pred -ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc-----CCCchhh---hhhhhHHHHHHhhhHHHHHHHHHHhhcC---
Confidence 334566677777777777777777777766654 3444332 2233222222222222221111111100
Q ss_pred cCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 373 KGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 373 k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
..+ -.++.+.-.+....|.+++|+..|++-+.+.....
T Consensus 584 ~~~---w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 584 YQH---WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred CCC---CeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 001 12344444556788999999999998888776644
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.29 E-value=2.2e-05 Score=99.66 Aligned_cols=221 Identities=6% Similarity=-0.050 Sum_probs=159.2
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001206 164 GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 243 (1124)
Q Consensus 164 G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ 243 (1124)
+...+....++..|..+|...+++++|+..++.+++. +|+....|+.+|.+++..+++.+|.-. +++.+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~ 93 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSF 93 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence 4567888899999999999999999999999988775 577788999999999999999888766 555543
Q ss_pred HHhc-----------CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC
Q 001206 244 HLTC-----------GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEA 312 (1124)
Q Consensus 244 ek~~-----------G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd 312 (1124)
.... -.+++..-.+++.||.||..+|++++|...|+++|++. +..+.++.++|..|... +
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-h
Confidence 2210 00123334688999999999999999999999999874 45678899999999999 9
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--HhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHH
Q 001206 313 YPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES--KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHD 390 (1124)
Q Consensus 313 ~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~--k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~ 390 (1124)
+++|++++.+|+..+-..- ...... ..|..++.. ..++.-..+.+.... ..+-....+++.-|-..|.
T Consensus 165 L~KA~~m~~KAV~~~i~~k--q~~~~~--e~W~k~~~~~~~d~d~f~~i~~ki~~------~~~~~~~~~~~~~l~~~y~ 234 (906)
T PRK14720 165 KEKAITYLKKAIYRFIKKK--QYVGIE--EIWSKLVHYNSDDFDFFLRIERKVLG------HREFTRLVGLLEDLYEPYK 234 (906)
T ss_pred HHHHHHHHHHHHHHHHhhh--cchHHH--HHHHHHHhcCcccchHHHHHHHHHHh------hhccchhHHHHHHHHHHHh
Confidence 9999999999998864331 111111 123333222 111111111111100 0011235577778888999
Q ss_pred HcCChHHHHHHHHHHHHHHhhhc
Q 001206 391 TKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 391 ~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
..+++++++.+++.+|.+..+..
T Consensus 235 ~~~~~~~~i~iLK~iL~~~~~n~ 257 (906)
T PRK14720 235 ALEDWDEVIYILKKILEHDNKNN 257 (906)
T ss_pred hhhhhhHHHHHHHHHHhcCCcch
Confidence 99999999999999999877643
No 131
>PLN03077 Protein ECB2; Provisional
Probab=98.28 E-value=7.9e-05 Score=96.31 Aligned_cols=239 Identities=9% Similarity=-0.031 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI-------- 200 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI-------- 200 (1124)
...+..+...|...|++++|.++|++... + ...+|+.|...|.+.|++++|+.+|++....
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t 391 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMET----------K-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCC----------C-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee
Confidence 33455566677778888888887776321 1 1236777888888888888888887764321
Q ss_pred --------------------HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001206 201 --------------------NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 260 (1124)
Q Consensus 201 --------------------~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~n 260 (1124)
..............+++.|...|.+.|++++|++.|++..+ + ...+|+.
T Consensus 392 ~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~----d~vs~~~ 460 (857)
T PLN03077 392 IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-------K----DVISWTS 460 (857)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-------C----CeeeHHH
Confidence 00000000111233556677777778888877777765311 0 0123334
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--------------------------------------------------------
Q 001206 261 VAMMEEGLGNVHVALRYLHKALKC-------------------------------------------------------- 284 (1124)
Q Consensus 261 LA~iy~~lGdyeeAle~lekALei-------------------------------------------------------- 284 (1124)
+...|...|++++|+.+|++.+..
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 444444444444444444443210
Q ss_pred ------HHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHH
Q 001206 285 ------NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEA 358 (1124)
Q Consensus 285 ------~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeA 358 (1124)
+... .....+|..|...|...|+.++|+..|++..+. -..++.......+. ++...+..+.+..
T Consensus 541 ~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~---g~~Pd~~T~~~ll~--a~~~~g~v~ea~~ 610 (857)
T PLN03077 541 NYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES---GVNPDEVTFISLLC--ACSRSGMVTQGLE 610 (857)
T ss_pred HHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCcccHHHHHH--HHhhcChHHHHHH
Confidence 0000 012345777778888888888888888765432 22344332221111 1222333333333
Q ss_pred HHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001206 359 ARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 405 (1124)
Q Consensus 359 l~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekA 405 (1124)
+...... .....+ ....|..+..+|.+.|++++|..++++.
T Consensus 611 ~f~~M~~-----~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 611 YFHSMEE-----KYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHH-----HhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 3221110 000011 1256788888999999999999888763
No 132
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.26 E-value=8e-05 Score=83.75 Aligned_cols=145 Identities=17% Similarity=0.097 Sum_probs=113.2
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 166 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 166 d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
.++.-+.-.+.||.-++..|++..|+..|..|++. +|....+++.-|.+|..+|+-.-|+.-+.+.|++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--- 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--- 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---
Confidence 34555666788999999999999999999999986 5778899999999999999999999999999985
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC-CCc------HHHHHHHHHHHHHHHHcCChHHHHH
Q 001206 246 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG-PDH------IQTAASYHAIAIALSLMEAYPLSVQ 318 (1124)
Q Consensus 246 ~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG-~d~------p~~A~a~~nLA~ly~~lGd~eeAle 318 (1124)
.|+...+...-|.++.++|++++|+.-|+..|...-.... .++ ..-...+.....-+...|++..|+.
T Consensus 102 -----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 102 -----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred -----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHH
Confidence 5778888899999999999999999999998874310000 000 0111223334445556789999999
Q ss_pred HHHHHHHH
Q 001206 319 HEQTTLQI 326 (1124)
Q Consensus 319 ~lekALei 326 (1124)
+....+++
T Consensus 177 ~i~~llEi 184 (504)
T KOG0624|consen 177 MITHLLEI 184 (504)
T ss_pred HHHHHHhc
Confidence 88888776
No 133
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.24 E-value=4.5e-06 Score=73.17 Aligned_cols=65 Identities=29% Similarity=0.543 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 001206 170 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ-HTELALKYVKRALYL 242 (1124)
Q Consensus 170 ~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lG-dyeeAley~ekALei 242 (1124)
.+.+|..+|.+++..|+|++|+.+|.+++.+ +|....+++++|.+|..+| ++++|+++|++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3678999999999999999999999999998 4667889999999999999 799999999999985
No 134
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.24 E-value=0.00014 Score=87.34 Aligned_cols=225 Identities=16% Similarity=0.085 Sum_probs=149.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001206 142 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 221 (1124)
Q Consensus 142 qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~ 221 (1124)
.|..++-..+|++|+..+ |..-..|...+..++..||...|...+.+|++. +|..-.++..--.
T Consensus 563 hgt~Esl~Allqkav~~~--------pkae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavK 626 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQC--------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVK 626 (913)
T ss_pred cCcHHHHHHHHHHHHHhC--------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHH
Confidence 344444444555544432 222334556667777778888888888877765 2333445555556
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001206 222 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 301 (1124)
Q Consensus 222 iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~ 301 (1124)
+.+...+++.|..+|.+|..+ ..+..+++.-+.+...+++.++|+++++++|+.+ +.....|.
T Consensus 627 le~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~l 689 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWL 689 (913)
T ss_pred HhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHH
Confidence 677888888888888888763 2235667777888899999999999999999876 44567888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHH
Q 001206 302 AIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDL 381 (1124)
Q Consensus 302 nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vael 381 (1124)
.+|+++.++++.+.|...|...++.+ +...-.+..+..|..... ..-.+..+..... ...+....+
T Consensus 690 mlGQi~e~~~~ie~aR~aY~~G~k~c-----P~~ipLWllLakleEk~~-~~~rAR~ildrar--------lkNPk~~~l 755 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAYLQGTKKC-----PNSIPLWLLLAKLEEKDG-QLVRARSILDRAR--------LKNPKNALL 755 (913)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccccC-----CCCchHHHHHHHHHHHhc-chhhHHHHHHHHH--------hcCCCcchh
Confidence 99999999999999999888777653 444433333333332211 1222333322111 112334455
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 382 LDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 382 l~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
|...-....+.|+.++|.....+||+-+.+.+
T Consensus 756 wle~Ir~ElR~gn~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 756 WLESIRMELRAGNKEQAELLMAKALQECPSSG 787 (913)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc
Confidence 65666667889999999999999999888765
No 135
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.24 E-value=2.3e-05 Score=95.54 Aligned_cols=138 Identities=15% Similarity=0.069 Sum_probs=106.4
Q ss_pred ChHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHH--------HHHHH
Q 001206 125 SSADGRQLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFN--------QATIY 193 (1124)
Q Consensus 125 ~s~~Ar~Ll~lG~~yl~qGd---yeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdyd--------eAle~ 193 (1124)
....|..++..|..++.+++ +..|+.+|++|+++ +|..+.+|..|+.+|.....+. .+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 34467788888988887665 88999999999988 7888889998888886653332 23333
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH
Q 001206 194 QQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 273 (1124)
Q Consensus 194 ~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyee 273 (1124)
.++++.+ ...+....+|.-+|..+...|++++|..+|++|+++ .+. +.+|..+|.+|...|++++
T Consensus 407 ~~~a~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~e 471 (517)
T PRK10153 407 LDNIVAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRL 471 (517)
T ss_pred HHHhhhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHH
Confidence 3333222 112333577888899999999999999999999986 233 5789999999999999999
Q ss_pred HHHHHHHHHHHH
Q 001206 274 ALRYLHKALKCN 285 (1124)
Q Consensus 274 Ale~lekALei~ 285 (1124)
|+++|++|+.+.
T Consensus 472 A~~~~~~A~~L~ 483 (517)
T PRK10153 472 AADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 136
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.22 E-value=1.6e-05 Score=78.77 Aligned_cols=102 Identities=27% Similarity=0.235 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 172 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 251 (1124)
Q Consensus 172 ~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dh 251 (1124)
.+++.+|.++..+|+.++|+.+|++++.. |.+.+....++..+|..|..+|++++|+..+++++.-+ ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 46889999999999999999999999884 56667778899999999999999999999999987631 222
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001206 252 PNTAATYINVAMMEEGLGNVHVALRYLHKALK 283 (1124)
Q Consensus 252 p~~a~al~nLA~iy~~lGdyeeAle~lekALe 283 (1124)
+....+...++.++...|++++|+..+-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33555667789999999999999999987764
No 137
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.20 E-value=6.2e-06 Score=72.32 Aligned_cols=64 Identities=30% Similarity=0.497 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Q 001206 213 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-NVHVALRYLHKALKC 284 (1124)
Q Consensus 213 a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lG-dyeeAle~lekALei 284 (1124)
+.++.++|.+++..|+|++|+.+|.+++++ +|....+++++|.+|..+| ++++|+++|++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 568899999999999999999999999996 4667889999999999999 799999999999986
No 138
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2e-05 Score=90.87 Aligned_cols=141 Identities=15% Similarity=0.150 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCc-------hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR-------MTAGAYSLLAVVLYHTGDFNQATIYQQKALD 199 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p-------~~A~ay~nLG~ly~~lGdydeAle~~~KALe 199 (1124)
..|......|..|+..|+|..|...|++|+..+....+.+.. ....++.|||.||..+++|.+|+.++.++|.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 346677888999999999999999999999987643322221 2345788999999999999999999999888
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH-HHHHH
Q 001206 200 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV-ALRYL 278 (1124)
Q Consensus 200 I~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyee-Ale~l 278 (1124)
+ .+....+++.-|.+|..+|+|+.|+..|++|+++ .|..-.+...|..+.....++.+ ..++|
T Consensus 286 ~--------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 286 L--------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred c--------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 3456788899999999999999999999999886 23333444455555444333332 24445
Q ss_pred HHHHH
Q 001206 279 HKALK 283 (1124)
Q Consensus 279 ekALe 283 (1124)
.+.+.
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 44443
No 139
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.19 E-value=2.9e-05 Score=86.91 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=91.4
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 129 GRQLLESSKTA-LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 129 Ar~Ll~lG~~y-l~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
....|..|..+ +..|+|++|+..|++.+..+ +++.....+++.||.+|+..|++++|+.+|++++..+ +
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P 211 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----P 211 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 45667777765 66799999999999998874 5566778899999999999999999999999999875 6
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
+++....+++.+|.+|..+|++++|..+|+++++.
T Consensus 212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999998875
No 140
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.19 E-value=0.00046 Score=79.45 Aligned_cols=245 Identities=18% Similarity=0.074 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.++.....|..-+..|+|.+|++...++-+. .+.-..+|..-+.....+||++.|-.|+.++-+.. .
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-----~ 149 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-----G 149 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----C
Confidence 4666677788888899999999998885443 34445567777888899999999999999887652 1
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC--- 284 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei--- 284 (1124)
+ ++...+...+.++..+|++..|..-..++++. ++.|+ ..+.-...+|...|+|.+...++.+.-+.
T Consensus 150 ~--~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~-----~pr~~---~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l 219 (400)
T COG3071 150 D--DTLAVELTRARLLLNRRDYPAARENVDQLLEM-----TPRHP---EVLRLALRAYIRLGAWQALLAILPKLRKAGLL 219 (400)
T ss_pred C--chHHHHHHHHHHHHhCCCchhHHHHHHHHHHh-----CcCCh---HHHHHHHHHHHHhccHHHHHHHHHHHHHccCC
Confidence 1 24567778899999999999999999888874 33344 44555678888999988887776543321
Q ss_pred ----------------HHHhcCCC-cHH--------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 001206 285 ----------------NQRLLGPD-HIQ--------------TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 333 (1124)
Q Consensus 285 ----------------~~k~lG~d-~p~--------------~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~ 333 (1124)
.++..... ... ...+...++.-+...|++++|.+..+++++- .
T Consensus 220 ~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~---~--- 293 (400)
T COG3071 220 SDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR---Q--- 293 (400)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh---c---
Confidence 01110000 000 0223445677778899999999988888763 1
Q ss_pred CCHHHHHHHHHHHHHHHHhHH-HHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhh
Q 001206 334 DDLRTQDAAAWLEYFESKAFE-QQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 412 (1124)
Q Consensus 334 dh~~t~~a~~~La~l~~k~~e-~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl 412 (1124)
.++. ....+..+.-.... ..+.+.. ..+.|+.-..++..||..|.+.+.+.+|..+++.|++...+.
T Consensus 294 ~D~~---L~~~~~~l~~~d~~~l~k~~e~---------~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~ 361 (400)
T COG3071 294 WDPR---LCRLIPRLRPGDPEPLIKAAEK---------WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA 361 (400)
T ss_pred cChh---HHHHHhhcCCCCchHHHHHHHH---------HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh
Confidence 1222 11111111111111 1111111 111223333678888888888888888888888888877665
Q ss_pred c
Q 001206 413 Y 413 (1124)
Q Consensus 413 ~ 413 (1124)
.
T Consensus 362 ~ 362 (400)
T COG3071 362 S 362 (400)
T ss_pred h
Confidence 5
No 141
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.8e-05 Score=91.13 Aligned_cols=126 Identities=21% Similarity=0.262 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001206 172 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP-------DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 244 (1124)
Q Consensus 172 ~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p-------~~a~ay~nLA~iy~~lGdyeeAley~ekALei~e 244 (1124)
.....-|..|+..|+|..|...|++|+..+....+.+.. ....++.|||.||..+++|.+|+.++.++|++
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-- 286 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-- 286 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--
Confidence 345567889999999999999999999987654333322 23457899999999999999999999999985
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCCh
Q 001206 245 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAY 313 (1124)
Q Consensus 245 k~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~ 313 (1124)
.+....+++.-|.+|..+|+|+.|+..|++|+++. +.+ -.+...|..+..+..++
T Consensus 287 ------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-----P~N---ka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 287 ------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-----PSN---KAARAELIKLKQKIREY 341 (397)
T ss_pred ------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHHHHHH
Confidence 45567899999999999999999999999999985 332 34455555555544433
No 142
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.16 E-value=0.00048 Score=84.44 Aligned_cols=179 Identities=18% Similarity=0.157 Sum_probs=125.2
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHhc
Q 001206 131 QLLESSKTA-LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG----DFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 131 ~Ll~lG~~y-l~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lG----dydeAle~~~KALeI~er~l 205 (1124)
.++-.+..| -..+.++++++|.++++..+... .......+|..+|.+|..+- ...+=..+.+++++.+++..
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 334444444 45689999999999999977433 34455678888888886542 34444556677777777664
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 206 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
..+..+ ..+.++||.-|..+++.+.|+.+.++++++- ..+.+.++..||.++..++++.+|+...+.+++-+
T Consensus 472 ~~d~~d-p~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 472 QFDPTD-PLVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred hcCCCC-chHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 444332 2677889999999999999999999999862 22346788899999999999999999999999876
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 001206 286 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 328 (1124)
Q Consensus 286 ~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~ 328 (1124)
-.. + .....-..+-...++.++|+..+..-+++++
T Consensus 544 ~~N----~----~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we 578 (799)
T KOG4162|consen 544 GDN----H----VLMDGKIHIELTFNDREEALDTCIHKLALWE 578 (799)
T ss_pred hhh----h----hhchhhhhhhhhcccHHHHHHHHHHHHHHHH
Confidence 332 1 1111122233346677777777666666665
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.16 E-value=1.1e-05 Score=73.89 Aligned_cols=84 Identities=26% Similarity=0.307 Sum_probs=66.4
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 001206 141 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 220 (1124)
Q Consensus 141 ~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA 220 (1124)
.+|+|++|+.+|+++++... ..+ ....++.||.+|+.+|+|++|+.++++ +.+. +....+...+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~-----~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDP-----TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHC-----GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCC-----CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 36899999999999998742 122 455777899999999999999999998 4332 23456677789
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 001206 221 VFYYRLQHTELALKYVKRA 239 (1124)
Q Consensus 221 ~iy~~lGdyeeAley~ekA 239 (1124)
.+++.+|+|++|+++|+++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 144
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.15 E-value=3.2e-05 Score=76.60 Aligned_cols=102 Identities=26% Similarity=0.209 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 001206 214 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 293 (1124)
Q Consensus 214 ~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~ 293 (1124)
.+.+++|.++-.+|+.++|+.+|+++++. |.+......++.++|..|..+|++++|+.++++++.-. ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 36788999999999999999999999983 55666778899999999999999999999999987643 332
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 294 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 325 (1124)
Q Consensus 294 p~~A~a~~nLA~ly~~lGd~eeAle~lekALe 325 (1124)
.........++.++..+|++++|+..+-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445556689999999999999998877664
No 145
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.15 E-value=4.4e-05 Score=85.47 Aligned_cols=104 Identities=10% Similarity=0.058 Sum_probs=90.1
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 214 KSYGDLAVFY-YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 292 (1124)
Q Consensus 214 ~ay~nLA~iy-~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d 292 (1124)
...++.|..+ +..|+|++|+..|++.+..+ ++++....+++.||.+|+..|++++|+.+|++++..+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 4556677665 66799999999999998863 4555667889999999999999999999999999876 67
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 293 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 293 ~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
++....+++.+|.+|..+|++++|...|++.++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 78889999999999999999999999999888764
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.14 E-value=1.3e-05 Score=73.46 Aligned_cols=84 Identities=23% Similarity=0.208 Sum_probs=66.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 001206 225 RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 304 (1124)
Q Consensus 225 ~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA 304 (1124)
.+|+|+.|+.+|+++++.... .+ ....++++|.+|..+|+|++|+.++++ +... +....+++.+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 368999999999999986421 22 455677899999999999999999998 4433 22356667789
Q ss_pred HHHHHcCChHHHHHHHHHH
Q 001206 305 IALSLMEAYPLSVQHEQTT 323 (1124)
Q Consensus 305 ~ly~~lGd~eeAle~lekA 323 (1124)
.++..+|++++|+.+|+++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 147
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.00036 Score=76.32 Aligned_cols=159 Identities=14% Similarity=0.070 Sum_probs=116.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001206 142 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 221 (1124)
Q Consensus 142 qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~ 221 (1124)
..+-++-++++.+.+.-...- ...++.-..|-.+..+....|+.+.|..++++...-+ +.+ .+....-|.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-----p~S---~RV~~lkam 94 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-----PGS---KRVGKLKAM 94 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-----CCC---hhHHHHHHH
Confidence 345666777777666554432 1223445567777778888899999988887654432 223 344555688
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001206 222 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 301 (1124)
Q Consensus 222 iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~ 301 (1124)
.+...|+|++|+++|+..++ ++|....++-.--.+...+|+--+|++.+.+-++.+ +....+|.
T Consensus 95 ~lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~ 158 (289)
T KOG3060|consen 95 LLEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWH 158 (289)
T ss_pred HHHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHH
Confidence 89999999999999999876 345545555555556778888889999998888776 23457899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 302 AIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 302 nLA~ly~~lGd~eeAle~lekALei 326 (1124)
.|+.+|..+|+|++|.-+|++.+-+
T Consensus 159 eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 159 ELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 9999999999999999999988754
No 148
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.14 E-value=0.00067 Score=67.56 Aligned_cols=173 Identities=27% Similarity=0.278 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
.......+..+...+++..+...+..++.. .........+..+|..+...+++..++..+.+++.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 127 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD----- 127 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC-----
Confidence 445566677888899999999999888764 124566778889999999999999999999888775311
Q ss_pred ChhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 209 HPDTMKSYGDLAV-FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 209 ~p~~a~ay~nLA~-iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
. .......+. ++...|++++|..+|.+++... +........+..++..+...+++++|+..+.+++.....
T Consensus 128 -~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 128 -P--DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred -c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 1 122233344 8999999999999999995521 101245566677777788999999999999999987632
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 288 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
. ....+..++..+...+++..|..++.+++...
T Consensus 200 ~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 200 D-------DAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred c-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 1 35678889999999999999999999888764
No 149
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.00055 Score=77.37 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIY 193 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~ 193 (1124)
.-+.+|.+++..|+|++|+..|.-+... +.--+....+||.+++.+|.|.+|...
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~--------~~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNK--------DDAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhcc--------CCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 3455677788888888888777655431 112244566667777777766666554
No 150
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.0003 Score=85.79 Aligned_cols=162 Identities=19% Similarity=0.183 Sum_probs=108.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001206 136 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 215 (1124)
Q Consensus 136 G~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~a 215 (1124)
|.+....|-+++|+.+|+++-+ |..|-.+|..+|.+++|.+.. +. .|...+-..
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR----------------~DLlNKlyQs~g~w~eA~eiA-------E~---~DRiHLr~T 860 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKR----------------YDLLNKLYQSQGMWSEAFEIA-------ET---KDRIHLRNT 860 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH----------------HHHHHHHHHhcccHHHHHHHH-------hh---ccceehhhh
Confidence 3445556666666666665432 334555667777777665543 32 233446778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHhcCCCChhH----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001206 216 YGDLAVFYYRLQHTELALKYVKRAL----YLLHLTCGPSHPNT----------AATYINVAMMEEGLGNVHVALRYLHKA 281 (1124)
Q Consensus 216 y~nLA~iy~~lGdyeeAley~ekAL----ei~ek~~G~dhp~~----------a~al~nLA~iy~~lGdyeeAle~lekA 281 (1124)
|++.|..+...++.+.|++||+++- ++.+-+. +.|.. -..|...|..+...|+.+.|+.+|..|
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~--e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK--EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH--hChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 9999999999999999999999853 3322211 11211 245666788999999999999999998
Q ss_pred HHHHHHh-----cCCC---------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 282 LKCNQRL-----LGPD---------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 282 Lei~~k~-----lG~d---------~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
-+.+... .|.- .-+.+ +.+.||+.|...|++.+|+.+|.+|-..
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~A-AcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKA-ACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 8765332 1211 11233 4556999999999999999999886543
No 151
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.06 E-value=0.0024 Score=73.75 Aligned_cols=242 Identities=15% Similarity=0.050 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
.-.|+.-+.....+|+++.|-.|+.++-+.. .......+..++.+...+|++..|..-..+++.+ ++.
T Consensus 118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-------~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~-----~pr 185 (400)
T COG3071 118 VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-------GDDTLAVELTRARLLLNRRDYPAARENVDQLLEM-----TPR 185 (400)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-------CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh-----CcC
Confidence 3456666778888999999999998887652 1234457778889999999999999988888877 233
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------HHHHhcCCC-----------Chh----H
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALY-------------------LLHLTCGPS-----------HPN----T 254 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALe-------------------i~ek~~G~d-----------hp~----~ 254 (1124)
+ ...+.-...+|.+.|+|.+.+.++.+.-+ ++++....+ -|. .
T Consensus 186 ~---~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~ 262 (400)
T COG3071 186 H---PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRND 262 (400)
T ss_pred C---hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcC
Confidence 4 44555667888889988888877655433 111111000 000 1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 001206 255 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 334 (1124)
Q Consensus 255 a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~d 334 (1124)
..+...++.-+...|++++|.+..+++|+.. .++. .+..++. ..-++...=++..++.++. -++
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~------~D~~---L~~~~~~--l~~~d~~~l~k~~e~~l~~-----h~~ 326 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQ------WDPR---LCRLIPR--LRPGDPEPLIKAAEKWLKQ-----HPE 326 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhc------cChh---HHHHHhh--cCCCCchHHHHHHHHHHHh-----CCC
Confidence 2334556778889999999999999998753 1121 1111121 2345555555555555543 355
Q ss_pred CHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 335 DLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 335 h~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
++....++..|.+..+...+..+.+. ...... .-...+..+|.++.++|+..+|...++.++.+..+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~le-aAl~~~---------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALE-AALKLR---------PSASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHH-HHHhcC---------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 66555555555544433333333332 211111 12245788999999999999999999999966544
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0017 Score=71.15 Aligned_cols=161 Identities=17% Similarity=0.126 Sum_probs=121.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 001206 135 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 214 (1124)
Q Consensus 135 lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ 214 (1124)
...+.+..|+.+.|..++++....+ |..-+....-|..+...|.+++|+++|...+. |+|....
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--------ddpt~~v 121 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--------DDPTDTV 121 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--------cCcchhH
Confidence 3445677899999999988765542 33345666778888889999999999987664 2354455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 001206 215 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 294 (1124)
Q Consensus 215 ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p 294 (1124)
++-.--.+...+|+.-+|++-+..-++.+ +....++..|+.+|...|+|++|.-+|++.+-+. |
T Consensus 122 ~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~--------P 185 (289)
T KOG3060|consen 122 IRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ--------P 185 (289)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC--------C
Confidence 55555556778899989998888877764 2336788999999999999999999999988653 3
Q ss_pred HHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHH
Q 001206 295 QTAASYHAIAIALSLME---AYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 295 ~~A~a~~nLA~ly~~lG---d~eeAle~lekALei~ 327 (1124)
....++..+|.+++-+| ++.-|..||.+++++.
T Consensus 186 ~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 186 FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 34456667777777665 5677999999999874
No 153
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.05 E-value=0.00083 Score=81.91 Aligned_cols=144 Identities=17% Similarity=0.061 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 170 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 249 (1124)
Q Consensus 170 ~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~ 249 (1124)
...+++.||..|...|++++|+.++++||.. .|.....|...|.+|-+.|++.+|.++++.|..+
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L------- 257 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL------- 257 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC-------
Confidence 3568899999999999999999999999986 4777889999999999999999999999999875
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc-CC-C---cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001206 250 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL-GP-D---HIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 324 (1124)
Q Consensus 250 dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~l-G~-d---~p~~A~a~~nLA~ly~~lGd~eeAle~lekAL 324 (1124)
| ...-.+-...+..+.+.|+.++|.+.+.. +.+.. ++ . ..+........|.+|..+|++..|+..|....
T Consensus 258 D-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~----Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 258 D-LADRYINSKCAKYLLRAGRIEEAEKTASL----FTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred C-hhhHHHHHHHHHHHHHCCCHHHHHHHHHh----hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1 11223334567888899999999887653 22211 11 1 12233445678999999999999999999999
Q ss_pred HHHHHhcCC
Q 001206 325 QILRAKLGP 333 (1124)
Q Consensus 325 ei~~k~lG~ 333 (1124)
+++......
T Consensus 333 k~f~~~~~D 341 (517)
T PF12569_consen 333 KHFDDFEED 341 (517)
T ss_pred HHHHHHhcc
Confidence 999876543
No 154
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.00013 Score=82.20 Aligned_cols=163 Identities=16% Similarity=0.090 Sum_probs=110.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001206 139 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 218 (1124)
Q Consensus 139 yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~n 218 (1124)
++...+|..|+.+++-.+.+- ..+-...-..+|.||+++|+|++|+..|.-+.. .+.+ -+....|
T Consensus 32 fls~rDytGAislLefk~~~~-------~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-------~~~~-~~el~vn 96 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLD-------REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-------KDDA-PAELGVN 96 (557)
T ss_pred HHhcccchhHHHHHHHhhccc-------hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-------cCCC-Ccccchh
Confidence 466788999999888776442 223345667899999999999999999876654 1222 2556789
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH----------HHHHhcCC--------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001206 219 LAVFYYRLQHTELALKYVKRALY----------LLHLTCGP--------SHPNTAATYINVAMMEEGLGNVHVALRYLHK 280 (1124)
Q Consensus 219 LA~iy~~lGdyeeAley~ekALe----------i~ek~~G~--------dhp~~a~al~nLA~iy~~lGdyeeAle~lek 280 (1124)
||.|++.+|.|.+|.....+|-+ +..+...+ .-.++..-...||.+.+..-.|++|++.|++
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987665422 11111100 0111223344566677777778888888877
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001206 281 ALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 324 (1124)
Q Consensus 281 ALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekAL 324 (1124)
.|.- .+.....-..+|.+|.++.-|+-+.+.++--+
T Consensus 177 vL~d--------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 177 VLQD--------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHhc--------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 7653 35555666778999999999988877655433
No 155
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=7.9e-05 Score=82.45 Aligned_cols=163 Identities=18% Similarity=0.142 Sum_probs=118.0
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 001206 140 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 219 (1124)
Q Consensus 140 l~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nL 219 (1124)
+...+|++|++++.--. ...+.....+..||.||++..+|..|..+|++...+ +|........-
T Consensus 21 I~d~ry~DaI~~l~s~~--------Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~ 84 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSEL--------ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQ 84 (459)
T ss_pred HHHhhHHHHHHHHHHHH--------hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHH
Confidence 45567788877765433 335666678999999999999999999999887655 46556555566
Q ss_pred HHHHHHcCCHHHHHHHHHHHH----------HHHHHh-cCC-C------------ChhHHHHHHHHHHHHHHCCCHHHHH
Q 001206 220 AVFYYRLQHTELALKYVKRAL----------YLLHLT-CGP-S------------HPNTAATYINVAMMEEGLGNVHVAL 275 (1124)
Q Consensus 220 A~iy~~lGdyeeAley~ekAL----------ei~ek~-~G~-d------------hp~~a~al~nLA~iy~~lGdyeeAl 275 (1124)
|..++..+.+..|++...... ++...+ +.. + ....+...++.|.+.++.|+|+.|.
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 777777777777776554332 221111 000 0 1245678899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 276 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 276 e~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
+-|+.|++.. .-.+ ..-+++|.++...++++.|+++..+.++.
T Consensus 165 qkFqaAlqvs-----Gyqp---llAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 165 QKFQAALQVS-----GYQP---LLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHHHHhhc-----CCCc---hhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 9999999874 2222 34468999999999999999998887764
No 156
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.00 E-value=0.0002 Score=89.16 Aligned_cols=181 Identities=12% Similarity=0.018 Sum_probs=122.9
Q ss_pred hhhhhhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001206 117 PVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK 196 (1124)
Q Consensus 117 pv~K~~~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~K 196 (1124)
.+.+........|-.+-.+|.+|....+...|..+|.+|.++ ++..+.+.-.++.+|....+++.|....-.
T Consensus 480 ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 480 ALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 344555566667888888999998888899999999999877 555667777788888888888888776333
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 001206 197 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 276 (1124)
Q Consensus 197 ALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle 276 (1124)
+-+.... ......+..+|..|...+++..|+..|+.|+.+ .|....++..||.+|...|+|..|++
T Consensus 552 ~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~AlK 617 (1238)
T KOG1127|consen 552 AAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHALK 617 (1238)
T ss_pred HhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehHHH
Confidence 2222110 011122334677777777777777777777763 45566677777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 277 YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 277 ~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
.|.+|..+. |......+..|.+...+|+|.+|+..+...+..+
T Consensus 618 vF~kAs~Lr--------P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 618 VFTKASLLR--------PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred hhhhhHhcC--------cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 777776553 3334455666777777777777777776665544
No 157
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.99 E-value=0.00056 Score=82.54 Aligned_cols=171 Identities=19% Similarity=0.203 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
++.+--.|..+...|+-++|..+.+.++.. +....-||+.+|.++....+|++|+.+|+.|+.+
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~--------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~-------- 104 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRN--------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI-------- 104 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhcc--------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------
Confidence 556666788889999999999999988864 4455569999999999999999999999999997
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
.++...++..|+.+...+++|+-....-.+.+++ .+..-..+..+|..+...|++..|...++.-.......
T Consensus 105 ~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 105 EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3456788999999999999999887777766664 34556678889999999999999999988877665433
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 323 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekA 323 (1124)
..........+......++...|.+++|++++.+-
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 22223333455555667777888888888876643
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.96 E-value=0.00012 Score=89.42 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCH--------HHHHHHHHH
Q 001206 170 TAGAYSLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT--------ELALKYVKR 238 (1124)
Q Consensus 170 ~A~ay~nLG~ly~~lGd---ydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdy--------eeAley~ek 238 (1124)
.+.-++..|.-|...++ +..|+.+|++|+++ +|+.+.+|..|+.+|.....+ ..|.+..++
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34445666766666554 78899999999987 577788888888877655333 233333333
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q 001206 239 ALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 318 (1124)
Q Consensus 239 ALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle 318 (1124)
++.+ ...+....++.-+|.++...|++++|..+|++|+++. + .+.+|..+|.+|...|++++|++
T Consensus 410 a~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------p-s~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 410 IVAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------M-SWLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred hhhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------C-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 3222 1122334678888999999999999999999999875 2 25689999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHH
Q 001206 319 HEQTTLQILRAKLGPDDLR 337 (1124)
Q Consensus 319 ~lekALei~~k~lG~dh~~ 337 (1124)
+|++|+.+ .+.++.
T Consensus 475 ~~~~A~~L-----~P~~pt 488 (517)
T PRK10153 475 AYSTAFNL-----RPGENT 488 (517)
T ss_pred HHHHHHhc-----CCCCch
Confidence 99999886 566663
No 159
>PRK11906 transcriptional regulator; Provisional
Probab=97.95 E-value=0.00025 Score=83.68 Aligned_cols=163 Identities=13% Similarity=0.048 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhc---------CCHHHHHHHHHHHH
Q 001206 131 QLLESSKTALDKG---KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---------GDFNQATIYQQKAL 198 (1124)
Q Consensus 131 ~Ll~lG~~yl~qG---dyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~l---------GdydeAle~~~KAL 198 (1124)
.++-.|...+.++ ..+.|+.+|.+|+... ..+|..+.+|..+|.|++.. .+..+|.++.++|+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 5566777766555 3567788888888331 23788899999999998765 23445666666666
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 001206 199 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 278 (1124)
Q Consensus 199 eI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~l 278 (1124)
++ .+..+.++..+|.++...++++.|+..|++|+.+ .|..+.+++..|.+....|+.++|.+.+
T Consensus 332 el--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 332 DI--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hc--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 65 3445788999999999999999999999999985 6788999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHH-HHHHcCChHHHHHHHHH
Q 001206 279 HKALKCNQRLLGPDHIQTAASYHAIAI-ALSLMEAYPLSVQHEQT 322 (1124)
Q Consensus 279 ekALei~~k~lG~d~p~~A~a~~nLA~-ly~~lGd~eeAle~lek 322 (1124)
++|+++. +. ..+.....+-. .| .-...++|+.+|-+
T Consensus 396 ~~alrLs-----P~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQLE-----PR--RRKAVVIKECVDMY-VPNPLKNNIKLYYK 432 (458)
T ss_pred HHHhccC-----ch--hhHHHHHHHHHHHH-cCCchhhhHHHHhh
Confidence 9999875 11 12222333333 33 34566778776643
No 160
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.90 E-value=0.00047 Score=68.63 Aligned_cols=102 Identities=24% Similarity=0.220 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
.+.+-..|..+...|+++.|++.|.+++.+ -|..+.+|++.+..|..+|+.++|++-+.+|+++. |..
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~ 110 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQ 110 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Ccc
Confidence 445556677888999999999999999988 36778899999999999999999999999999985 444
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
......+|..-|.+|..+|+.+.|..-|+.|-++
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 5556788999999999999999999999998875
No 161
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.0015 Score=70.84 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 001206 143 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 222 (1124)
Q Consensus 143 GdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~i 222 (1124)
++|++|.++|.+|-.+ |....++..|=..|.+|-++..+. | ...+.+.+|...+.+
T Consensus 28 ~k~eeAadl~~~Aan~----------------------yklaK~w~~AG~aflkaA~~h~k~-~-skhDaat~YveA~~c 83 (288)
T KOG1586|consen 28 NKYEEAAELYERAANM----------------------YKLAKNWSAAGDAFLKAADLHLKA-G-SKHDAATTYVEAANC 83 (288)
T ss_pred cchHHHHHHHHHHHHH----------------------HHHHHhHHHHHHHHHHHHHHHHhc-C-CchhHHHHHHHHHHH
Confidence 4667777666665444 444455666666666666665553 2 333567778877777
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001206 223 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL-GNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 301 (1124)
Q Consensus 223 y~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~l-GdyeeAle~lekALei~~k~lG~d~p~~A~a~~ 301 (1124)
|.+. +..+|..+++++++|+.... .-...+.-+..||.+|..- .++++|+.+|++|-+.+..- ......-.++.
T Consensus 84 ykk~-~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~ssANKC~l 158 (288)
T KOG1586|consen 84 YKKV-DPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVSSANKCLL 158 (288)
T ss_pred hhcc-ChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhhhHHHHHH
Confidence 7655 99999999999999987654 2233455667899999876 99999999999999987421 11122335777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 001206 302 AIAIALSLMEAYPLSVQHEQTTLQ 325 (1124)
Q Consensus 302 nLA~ly~~lGd~eeAle~lekALe 325 (1124)
..|.+-..+++|.+|+..|++...
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999998887654
No 162
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.0034 Score=73.80 Aligned_cols=251 Identities=13% Similarity=-0.021 Sum_probs=157.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCC--Cc----hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC--CC
Q 001206 138 TALDKGKLEDAVTYGTKALAKLVAVCGPY--HR----MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL--DH 209 (1124)
Q Consensus 138 ~yl~qGdyeeAl~~f~kAL~i~e~i~G~d--~p----~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~--D~ 209 (1124)
.-+..|-|++|.++-.+++...++....+ .+ .....+-++..|-.-.|++.+|++-...+.+.+.+.-++ -.
T Consensus 284 hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr 363 (629)
T KOG2300|consen 284 HSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLR 363 (629)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHH
Confidence 33567889999999999998877653222 11 112345567778888999999999999999988775442 12
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 001206 210 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 289 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~l 289 (1124)
...+.+.+-+|.....-+.|+.|+..|..|+...... ...+.+-.|+|..|...|+-+.-. ++++..
T Consensus 364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y----~~ld~i---- 430 (629)
T KOG2300|consen 364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLY----KALDLI---- 430 (629)
T ss_pred HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHH----HHHHhc----
Confidence 2356678889999999999999999999999875432 235667789999999988755433 333332
Q ss_pred CCC-------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 001206 290 GPD-------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD-DLRTQDAAAWLEYFESKAFEQQEAARN 361 (1124)
Q Consensus 290 G~d-------~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~d-h~~t~~a~~~La~l~~k~~e~aeAl~~ 361 (1124)
++. +...+.+++..|...+.++++.||..++.+.+++... ++ ...+...+..|..+....+...++...
T Consensus 431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmana---ed~~rL~a~~LvLLs~v~lslgn~~es~nm 507 (629)
T KOG2300|consen 431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANA---EDLNRLTACSLVLLSHVFLSLGNTVESRNM 507 (629)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcch---hhHHHHHHHHHHHHHHHHHHhcchHHHHhc
Confidence 222 1234566778888889999999999999999998622 22 222333333444333333222222211
Q ss_pred ccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q 001206 362 GTRKPDASIASKGHLSVSDLLDYINPSHDTKGR--NVSTLKRKTY 404 (1124)
Q Consensus 362 ~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGd--yeeAl~~yek 404 (1124)
-....+......+++-..-....+..+|...|+ -+.+.+.|.+
T Consensus 508 vrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 508 VRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred cchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 111111111112222222233445666777777 5556666655
No 163
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.86 E-value=0.0005 Score=68.45 Aligned_cols=100 Identities=23% Similarity=0.269 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 173 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 252 (1124)
Q Consensus 173 ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp 252 (1124)
.+-.-|..+...|+++.|++.|.++|.++ |..+.+|+|-|..|.-+|+.++|++-+.+|+++. |....
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~tr 112 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTR 112 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cccch
Confidence 34456777888999999999999999985 5568899999999999999999999999999974 44455
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001206 253 NTAATYINVAMMEEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 253 ~~a~al~nLA~iy~~lGdyeeAle~lekALei 284 (1124)
....++..-|.+|..+|+.+.|..-|+.|-++
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 66788999999999999999999999998875
No 164
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.84 E-value=0.0022 Score=72.44 Aligned_cols=142 Identities=20% Similarity=0.144 Sum_probs=97.9
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH-h-cCCCCh----h
Q 001206 139 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINER-E-LGLDHP----D 211 (1124)
Q Consensus 139 yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lG-dydeAle~~~KALeI~er-~-lg~D~p----~ 211 (1124)
...+|+++.|..++.++-.+............+..+++.|.-.+..+ ++++|..++++|+++++. . ....++ -
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 45789999999999999887642222233457889999999999999 999999999999999865 1 112222 3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 212 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 212 ~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
...++..|+.+|...+.++...+ ..+++...+..++ +++.... ..+- ++...++.+++.+.+.+.+.-.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~~--L~l~-il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVFL--LKLE-ILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHHH--HHHH-HHhccCChhHHHHHHHHHHHhc
Confidence 46778899999999988864444 4444555554443 3443322 2222 2222788888888888877653
No 165
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=0.00012 Score=81.20 Aligned_cols=105 Identities=20% Similarity=0.235 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..+|+.|..++..|+|..|...|..-++.+ +.......+++.||.+++.+|+|+.|...|..++.-+ +
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P 209 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----P 209 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----C
Confidence 44558999999999999999999999988764 6788899999999999999999999999999988753 6
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
+++....+++.||.+..++|+.++|...|+++++.
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 67888899999999999999999999999998875
No 166
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.83 E-value=0.00076 Score=79.49 Aligned_cols=135 Identities=19% Similarity=0.177 Sum_probs=109.4
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 168 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 247 (1124)
Q Consensus 168 p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~ 247 (1124)
+....+.+..|..++..|++++|+..++..+.. .|+....+-..+.++...++..+|++.+++++.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----- 369 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL----- 369 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----
Confidence 345568899999999999999999999885443 4555666777899999999999999999999985
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 248 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 248 G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
.|.......++|.+|.+.|++.+|+.++++.+.-. +.....|..||..|..+|+..+|...+.+.+.+
T Consensus 370 ---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~--------p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 370 ---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND--------PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred ---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--------CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 34446677899999999999999999998876532 445577888899999999888887766655543
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.83 E-value=6.3e-05 Score=65.30 Aligned_cols=60 Identities=23% Similarity=0.475 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001206 133 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 200 (1124)
Q Consensus 133 l~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI 200 (1124)
+.+|..++..|+|++|+.+|++++.. +|....+++.+|.++..+|++++|+.+|++++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999865 6889999999999999999999999999999986
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.82 E-value=6.9e-05 Score=65.05 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 217 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 217 ~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
+.+|..++..|++++|+.+|++++. .+|....+++.+|.++..+|++++|+.+|++++++.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3689999999999999999999987 468889999999999999999999999999999864
No 169
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.77 E-value=0.0036 Score=69.16 Aligned_cols=174 Identities=18% Similarity=0.205 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
+..|+..|...++.|+|++|..+|+..... .+..+..-.+...++..++..++|++|+.+..+-+.++ +.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CC
Confidence 667899999999999999999999987643 14456677899999999999999999999999988874 66
Q ss_pred ChhHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcCCCChh--------------HHHHHHHHHHHHHHCC
Q 001206 209 HPDTMKSYGDLAVFYYRLQ-----HTELALKYVKRALYLLHLTCGPSHPN--------------TAATYINVAMMEEGLG 269 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lG-----dyeeAley~ekALei~ek~~G~dhp~--------------~a~al~nLA~iy~~lG 269 (1124)
|++...+++..|.+++..- +...+...+...-++..+- ++.+. .+.--..+|..|.+.|
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG 181 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888889999998877543 2222333332222222221 22211 1222345789999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Q 001206 270 NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 319 (1124)
Q Consensus 270 dyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~ 319 (1124)
.+--|+..+++.++-. ++...+-.++..|..+|..+|-.++|...
T Consensus 182 ~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 182 AYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred ChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 9999999999998876 34455667888899999999999998663
No 170
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.76 E-value=0.0011 Score=71.18 Aligned_cols=204 Identities=13% Similarity=0.036 Sum_probs=133.7
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
+...+..++..|.+|-..|-..-|.--|.+++.+ .|....+++.||..+...|+|+.|.+.|.-.+++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 4567788888999999999999999999999998 4778889999999999999999999999998885
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH-HHH
Q 001206 247 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT-TLQ 325 (1124)
Q Consensus 247 ~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lek-ALe 325 (1124)
+|..-.+..|-|..+.--|+|+-|.+-+.+-.+- ++.+|.....++ | -...-+..+|...+.+ +..
T Consensus 129 ----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~LWLY-l---~E~k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 129 ----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSLWLY-L---NEQKLDPKQAKTNLKQRAEK 195 (297)
T ss_pred ----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHHHHH-H---HHhhCCHHHHHHHHHHHHHh
Confidence 4555667788899999999999998776543322 244443321111 1 1123355566554332 222
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHh-HHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001206 326 ILRAKLGPDDLRTQDAAAWLEYFESKA-FEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTY 404 (1124)
Q Consensus 326 i~~k~lG~dh~~t~~a~~~La~l~~k~-~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yek 404 (1124)
. ..+...+......|+.+..+. ++...+ ... .+...+ ..+.+++++||..|...|+..+|...|+.
T Consensus 196 ~-----d~e~WG~~iV~~yLgkiS~e~l~~~~~a---~a~-~n~~~A----e~LTEtyFYL~K~~l~~G~~~~A~~LfKL 262 (297)
T COG4785 196 S-----DKEQWGWNIVEFYLGKISEETLMERLKA---DAT-DNTSLA----EHLTETYFYLGKYYLSLGDLDEATALFKL 262 (297)
T ss_pred c-----cHhhhhHHHHHHHHhhccHHHHHHHHHh---hcc-chHHHH----HHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 1 112222222223333332211 111111 111 111111 13668999999999999999999999998
Q ss_pred HHHH
Q 001206 405 VAKV 408 (1124)
Q Consensus 405 ALkL 408 (1124)
++..
T Consensus 263 aian 266 (297)
T COG4785 263 AVAN 266 (297)
T ss_pred HHHH
Confidence 7764
No 171
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.76 E-value=0.0023 Score=63.65 Aligned_cols=176 Identities=26% Similarity=0.278 Sum_probs=132.1
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHH
Q 001206 124 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAV-VLYHTGDFNQATIYQQKALDINE 202 (1124)
Q Consensus 124 ~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~-ly~~lGdydeAle~~~KALeI~e 202 (1124)
........++..+..+...+++..|+..+.+++.... .. .......+. ++...|+++.|..++.+++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~- 160 (291)
T COG0457 90 LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP------DP--DLAEALLALGALYELGDYEEALELYEKALELD- 160 (291)
T ss_pred hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC------Cc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 3444566777888888888888899988888876521 11 223333444 8999999999999999995531
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001206 203 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 282 (1124)
Q Consensus 203 r~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekAL 282 (1124)
.........+..++..+...++++.|+..+.+++...... ....+..++..+...+++++|+.++.+++
T Consensus 161 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 229 (291)
T COG0457 161 ----PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKAL 229 (291)
T ss_pred ----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 1012355666777777899999999999999999864321 46778899999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 283 KCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 283 ei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
..... ....+..++..+...+.+++|...+.+++...
T Consensus 230 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 230 ELDPD--------NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hhCcc--------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 87622 34556677777777788999999998888763
No 172
>PRK15331 chaperone protein SicA; Provisional
Probab=97.76 E-value=0.00018 Score=74.59 Aligned_cols=101 Identities=12% Similarity=-0.019 Sum_probs=83.9
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001206 125 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 204 (1124)
Q Consensus 125 ~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~ 204 (1124)
....-..++..|..++.+|++++|..+|+-.... ++...+.+..||.++..+++|++|+..|-.|..+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--- 101 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--- 101 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 4445677888999999999999999999754432 44556788999999999999999999999988763
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001206 205 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 241 (1124)
Q Consensus 205 lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALe 241 (1124)
.++ ....+..|.||+.+|+.+.|+.+|+.++.
T Consensus 102 --~~d---p~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 --KND---YRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred --cCC---CCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 233 33478899999999999999999999987
No 173
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.0022 Score=75.33 Aligned_cols=199 Identities=17% Similarity=0.097 Sum_probs=147.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001206 135 SSKTALDKGKLEDAVTYGTKALAKLVAVCGP--YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 212 (1124)
Q Consensus 135 lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~--d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~ 212 (1124)
+..+-+-.|++.+|++....+.+.+.+.-++ .....+...+.+|......+.|+.|...|..|+...+.. .-.
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~ 403 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQ 403 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHH
Confidence 3445567899999999999999988776432 123356778889999999999999999999999886542 224
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 213 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 213 a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~d-------hp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
+.+..|+|.+|.+.++-+. +.++++.. ++. +...+.+++-.|...+.++++.||..++++.|++.
T Consensus 404 a~~nlnlAi~YL~~~~~ed----~y~~ld~i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 404 AFCNLNLAISYLRIGDAED----LYKALDLI----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHhHHHHHHHhccHHH----HHHHHHhc----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 5667899999999877543 33444432 222 22346677888999999999999999999999987
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 001206 286 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES 350 (1124)
Q Consensus 286 ~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~ 350 (1124)
..- .....++-.+..|+.+....|+..++.....-++++.++. +|++..+.....+..+.+
T Consensus 476 nae--d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~ 536 (629)
T KOG2300|consen 476 NAE--DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQ 536 (629)
T ss_pred chh--hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHH
Confidence 321 2233456677889999999999999999999999998876 566666555555544433
No 174
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.75 E-value=0.0078 Score=75.44 Aligned_cols=264 Identities=14% Similarity=-0.028 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-cCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAV-CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i-~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
+..+..+.....+.+|++|..++.++......- .+......+......|.+....|++++|+.+.+.++...-. .-
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~---~~ 492 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE---AA 492 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc---cc
Confidence 445566778888999999999999887665431 01122345566667788899999999999999999887532 12
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
...-+.++..+|.+..-.|++++|+.+.+++.++.+... .......+.+..+.++..+|+...|.. .++.......
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~~--~~~~~~~~~q 568 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAEQ--EKAFNLIREQ 568 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHH
Confidence 233466788999999999999999999999999877642 223345566778999999994333332 2222222222
Q ss_pred cCCC---cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCC
Q 001206 289 LGPD---HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 365 (1124)
Q Consensus 289 lG~d---~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~ 365 (1124)
.... |.....++..+...|.+ ++.+..-...++.+........+. .......|+.+....++.+++......-
T Consensus 569 ~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~-~~~~~~~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 569 HLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLL-SRLALSMLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred HhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1111 22233444444444444 677777666666664332221111 1111123443333333333332221111
Q ss_pred CchhhhhcCCCcHHHHHHHHHHH-HHHcCChHHHHHHHHH
Q 001206 366 PDASIASKGHLSVSDLLDYINPS-HDTKGRNVSTLKRKTY 404 (1124)
Q Consensus 366 ~~~~~a~k~~~~vaell~~Lg~~-y~~qGdyeeAl~~yek 404 (1124)
.........+..+....+.+.-. ...+|++++|..+..+
T Consensus 645 ~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 645 ERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 11111111233332233333333 3778999999888866
No 175
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.0036 Score=67.98 Aligned_cols=182 Identities=14% Similarity=0.010 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
++.+...|..|....+|..|=..|.++-++..+. | ...+.+.+|...+.+|... +..+|+..++++++|+.... .
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~-~-skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~G--r 108 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKA-G-SKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMG--R 108 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-C-CchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhh--H
Confidence 4445555667777788999999999998887665 2 3345677888888887655 99999999999999987641 1
Q ss_pred ChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~l-GdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
-...+..+..||.+|-.- .++++|+.+|++|-+.++.-- .....-.++...|..-..+++|.+|+..|++......
T Consensus 109 f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee--s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~- 185 (288)
T KOG1586|consen 109 FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE--SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL- 185 (288)
T ss_pred HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 122345567889888755 899999999999999875311 1222345667778888889999999999998766531
Q ss_pred hcCCCcH-HHH-HHHHHHHHHHHHcCChHHHHHHH
Q 001206 288 LLGPDHI-QTA-ASYHAIAIALSLMEAYPLSVQHE 320 (1124)
Q Consensus 288 ~lG~d~p-~~A-~a~~nLA~ly~~lGd~eeAle~l 320 (1124)
+..-. ..+ ..++.-|.++....|.-.|...+
T Consensus 186 --~n~LLKys~KdyflkAgLChl~~~D~v~a~~AL 218 (288)
T KOG1586|consen 186 --DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRAL 218 (288)
T ss_pred --cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHH
Confidence 11111 111 22445566666656654444433
No 176
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.70 E-value=0.00023 Score=80.90 Aligned_cols=171 Identities=14% Similarity=0.058 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 210 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p 210 (1124)
..+..|.+++..|++++|++++.+. ....+...+-.+|..+++++.|...++++-++ ..|
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD-- 163 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG-------------GSLELLALAVQILLKMNRPDLAEKELKNMQQI-----DED-- 163 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCc--
Confidence 3455677788889999998877643 23456667788999999999999888775433 222
Q ss_pred hHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 211 DTMKSYGDLAVFYYRLQ--HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lG--dyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
...+....|++.+..| ++.+|..+|++..+ ..+....+++.+|.++..+|+|++|.+.+++|+...
T Consensus 164 -~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--- 231 (290)
T PF04733_consen 164 -SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--------KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--- 231 (290)
T ss_dssp -HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----
T ss_pred -HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---
Confidence 2333344455555555 58899888888432 123356778899999999999999999999987532
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPL-SVQHEQTTLQILRAKLGPDDLRTQDAAA 343 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~ee-Ale~lekALei~~k~lG~dh~~t~~a~~ 343 (1124)
+....++.+++.+...+|+..+ +.+++.+.... .++|+.+.....
T Consensus 232 -----~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~-----~p~h~~~~~~~~ 277 (290)
T PF04733_consen 232 -----PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS-----NPNHPLVKDLAE 277 (290)
T ss_dssp -----CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH-----TTTSHHHHHHHH
T ss_pred -----cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh-----CCCChHHHHHHH
Confidence 3345678899999999999844 55555543322 577876655443
No 177
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.69 E-value=0.005 Score=74.63 Aligned_cols=189 Identities=16% Similarity=0.080 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH-----
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKA------LAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA----- 197 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kA------L~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KA----- 197 (1124)
+..|-..|.+|-...++++|+++|++. +++.+-.+ .......-..-|.-+...|+++.|+.+|-.|
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~k 737 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK 737 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 344445566777778888888887754 33332221 1222333344566667778888887766443
Q ss_pred --------------HHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH------H-------------HHHH
Q 001206 198 --------------LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRA------L-------------YLLH 244 (1124)
Q Consensus 198 --------------LeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekA------L-------------ei~e 244 (1124)
+.|.+.+. |.......|..+|.-|...|+|+-|.++|.++ + .+.+
T Consensus 738 aieaai~akew~kai~ildniq--dqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQ--DQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhh--hhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHH
Confidence 22222211 11111223456677777788888887776542 2 2333
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH------HHHHHHHHHhc---------CCCcHH-HHHHHHHHHHHHH
Q 001206 245 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL------HKALKCNQRLL---------GPDHIQ-TAASYHAIAIALS 308 (1124)
Q Consensus 245 k~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~l------ekALei~~k~l---------G~d~p~-~A~a~~nLA~ly~ 308 (1124)
+..| ...+...|...|.-+...|+|.+|.++| .+|+.++.+.. +..|++ ...++..+|.-|.
T Consensus 816 e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e 893 (1636)
T KOG3616|consen 816 ECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELE 893 (1636)
T ss_pred HhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHH
Confidence 3333 2345667777788888888888888776 45666654431 111222 2345667888888
Q ss_pred HcCChHHHHHHHHHHH
Q 001206 309 LMEAYPLSVQHEQTTL 324 (1124)
Q Consensus 309 ~lGd~eeAle~lekAL 324 (1124)
..|+...|..+|-+|-
T Consensus 894 ~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 894 AEGDLKAAEEHFLEAG 909 (1636)
T ss_pred hccChhHHHHHHHhhh
Confidence 8888888877776543
No 178
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.67 E-value=0.00015 Score=85.53 Aligned_cols=71 Identities=23% Similarity=0.178 Sum_probs=63.5
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei 284 (1124)
.|+...+++|+|.+|+.+|+|++|+.+|++||++ .+++.....+++|+|.+|..+|++++|+.+|++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5778899999999999999999999999999997 3444444467999999999999999999999999997
No 179
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.67 E-value=0.00053 Score=80.85 Aligned_cols=119 Identities=16% Similarity=0.125 Sum_probs=97.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 001206 177 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 256 (1124)
Q Consensus 177 LG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~ 256 (1124)
|-.++...++++.|+.++++.... +|+ +...||.++...++-.+|++++++++.. .|....
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~ 235 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE 235 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence 344455668888888888775442 344 3455899999999999999999999952 455578
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001206 257 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 322 (1124)
Q Consensus 257 al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lek 322 (1124)
.+...|..+...++++.|+.+.++|..+. |....+|+.||.+|..+|+|+.|+..+..
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 88899999999999999999999999886 66778999999999999999999986653
No 180
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.0012 Score=77.40 Aligned_cols=112 Identities=15% Similarity=0.139 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCch--hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHhc
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM--TAGAYSLLAVVLYHTGDFNQATIYQQKALD-INEREL 205 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~--~A~ay~nLG~ly~~lGdydeAle~~~KALe-I~er~l 205 (1124)
+..++-.+..++..|+|..|.+++... .+.+...|...+. ...++++||.+++.+|.|..+..+|.+||. .+.++.
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 446677788888999999998877643 2222221222333 334568999999999999999999999996 444432
Q ss_pred CC---------CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001206 206 GL---------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 241 (1124)
Q Consensus 206 g~---------D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALe 241 (1124)
.. .....+.+++|+|..|...|+.-.|.+||.++..
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 22 1123467889999999999999999999999887
No 181
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.65 E-value=0.0058 Score=73.87 Aligned_cols=176 Identities=18% Similarity=0.172 Sum_probs=131.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 001206 138 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 217 (1124)
Q Consensus 138 ~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~ 217 (1124)
+-+..|+..+-+..|.+|+....-.. ..-....++..+|.+|...|+.+.|...|++|+..--. .-.+++.++.
T Consensus 356 V~l~e~~~~~~i~tyteAv~~vdP~k--a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~----~v~dLa~vw~ 429 (835)
T KOG2047|consen 356 VKLYEGNAAEQINTYTEAVKTVDPKK--AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK----TVEDLAEVWC 429 (835)
T ss_pred hhhhcCChHHHHHHHHHHHHccCccc--CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc----chHHHHHHHH
Confidence 44567888888999999887532111 12234568899999999999999999999999876211 1245788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH----HhcCCCChhH------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 218 DLAVFYYRLQHTELALKYVKRALYLLH----LTCGPSHPNT------AATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 218 nLA~iy~~lGdyeeAley~ekALei~e----k~~G~dhp~~------a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
+.|....+..+++.|+++.++|...=. ..+...+|.. ..++..++.+....|-++.-...|++.+++.
T Consensus 430 ~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr-- 507 (835)
T KOG2047|consen 430 AWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR-- 507 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh--
Confidence 999999999999999999999876321 1122223332 3456667778888888888888999988876
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 288 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
..+..+..|.|..+....-|++|.+.|++.+.+|
T Consensus 508 ------iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 508 ------IATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred ------cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 2344566677888888888999999999988876
No 182
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.00063 Score=75.48 Aligned_cols=102 Identities=12% Similarity=0.070 Sum_probs=92.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 001206 216 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 295 (1124)
Q Consensus 216 y~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~ 295 (1124)
+++.|.-++..|+|..|..-|..-+.. .++......+++.||.+++.+|+|+.|...|..+.+-+ ++++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 788999999999999999999988774 46778889999999999999999999999999988865 67777
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 296 TAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 296 ~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
...+++.||.+...+|+.++|...|++.++-+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 88999999999999999999999999888764
No 183
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.61 E-value=0.00092 Score=78.87 Aligned_cols=116 Identities=23% Similarity=0.195 Sum_probs=96.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 001206 138 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 217 (1124)
Q Consensus 138 ~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~ 217 (1124)
.+...++++.|+.+|++.... ++. +...|+.++...++..+|+.++.+++.. .|.....+.
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~LL~ 238 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSELLN 238 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence 344567899999888885543 343 5567899999999999999999999954 344477888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001206 218 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 280 (1124)
Q Consensus 218 nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lek 280 (1124)
..|.++...++++.|+.+.++|..+ .|....+++.||.+|..+|+|+.|+..++.
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 8999999999999999999999986 577788999999999999999999977763
No 184
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.61 E-value=0.00022 Score=84.12 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=64.2
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 166 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 166 d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
..|..+.++++||.+|+.+|+|++|+..|++||++ .+++.....+|+|+|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46788899999999999999999999999999998 3444444467999999999999999999999999986
No 185
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.59 E-value=0.00098 Score=71.43 Aligned_cols=172 Identities=15% Similarity=0.106 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
..|..+++.|..|-..|-+.-|..-|.++|.+ .|..+.+++.||..+...|+|+.|.+.|.-.+++
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL------ 128 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------ 128 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc------
Confidence 45778999999999999999999999999988 6888999999999999999999999999988876
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH-------------HHHHHHHHHHHH------
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA-------------ATYINVAMMEEG------ 267 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a-------------~al~nLA~iy~~------ 267 (1124)
+|..-.+..|-|..++.-|+|.-|.+-+.+-... .+++|... .+..+|..-+..
T Consensus 129 --Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~W 201 (297)
T COG4785 129 --DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQW 201 (297)
T ss_pred --CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhh
Confidence 4555567788888888899999998766553321 11222111 111222222221
Q ss_pred --------CCCHHHHHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 268 --------LGNVHVALRYLHKALKCNQRLLGPDHI----QTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 325 (1124)
Q Consensus 268 --------lGdyeeAle~lekALei~~k~lG~d~p----~~A~a~~nLA~ly~~lGd~eeAle~lekALe 325 (1124)
+|+..+ ..+++++.... .+.. ....+|+.||..|...|+.++|...|+-|+.
T Consensus 202 G~~iV~~yLgkiS~-e~l~~~~~a~a-----~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 202 GWNIVEFYLGKISE-ETLMERLKADA-----TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hHHHHHHHHhhccH-HHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 122111 12222222222 1222 2346789999999999999999999986654
No 186
>PRK11906 transcriptional regulator; Provisional
Probab=97.54 E-value=0.0014 Score=77.60 Aligned_cols=147 Identities=12% Similarity=-0.006 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHH
Q 001206 173 AYSLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL---------QHTELALKYVKRAL 240 (1124)
Q Consensus 173 ay~nLG~ly~~lGd---ydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~l---------GdyeeAley~ekAL 240 (1124)
-++..|.-....+. ...|+.+|.+|+... ..+|+.+.+|..+|.|++.. ....+|.++.++|+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 33556666555443 456777788877331 23678899999999998765 12356677777777
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 001206 241 YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHE 320 (1124)
Q Consensus 241 ei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~l 320 (1124)
++ .+..+.++..+|.++...++++.|...|++|+.+. |..+.+++..|.+....|+.++|++++
T Consensus 332 el--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 332 DI--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hc--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 64 34557888899999999999999999999999875 667889999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHH
Q 001206 321 QTTLQILRAKLGPDDLRTQDAAAWL 345 (1124)
Q Consensus 321 ekALei~~k~lG~dh~~t~~a~~~L 345 (1124)
++|+++ .|..........|+
T Consensus 396 ~~alrL-----sP~~~~~~~~~~~~ 415 (458)
T PRK11906 396 DKSLQL-----EPRRRKAVVIKECV 415 (458)
T ss_pred HHHhcc-----CchhhHHHHHHHHH
Confidence 999986 34433444445566
No 187
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.52 E-value=0.003 Score=81.41 Aligned_cols=215 Identities=14% Similarity=0.011 Sum_probs=153.2
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
+|..+..|..+-.-...+++.++|.+.+++||....=.-+...-+++.+|.||-+.|. .-+.-.+.|++|.+++.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG---~eesl~kVFeRAcqycd-- 1528 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG---TEESLKKVFERACQYCD-- 1528 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC---cHHHHHHHHHHHHHhcc--
Confidence 6666667776666778889999999999999976410001223346667777766664 55666778888877642
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 247 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 247 ~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
....|..|..+|...+++++|.++|+..++-+. +...+|..+|..+..+++-+.|...+++||..
T Consensus 1529 -------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1529 -------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred -------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 246778899999999999999999999887763 34577888899999999999999999999987
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001206 327 LRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 406 (1124)
Q Consensus 327 ~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekAL 406 (1124)
+.+ .+|.....-.+.|.+ ..+..+..+.+..+... .++...++|..+...-.+.|+.+.+...|++++
T Consensus 1594 lPk---~eHv~~IskfAqLEF-k~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1594 LPK---QEHVEFISKFAQLEF-KYGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred cch---hhhHHHHHHHHHHHh-hcCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 644 356665555444443 33344444445443332 233455788888888888899999999999988
Q ss_pred HHHhhhc
Q 001206 407 KVKGNFY 413 (1124)
Q Consensus 407 kL~~sl~ 413 (1124)
.+.-...
T Consensus 1662 ~l~l~~k 1668 (1710)
T KOG1070|consen 1662 ELKLSIK 1668 (1710)
T ss_pred hcCCChh
Confidence 7755443
No 188
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.48 E-value=0.0013 Score=66.80 Aligned_cols=104 Identities=20% Similarity=0.317 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
...++..|...+..|+|++|++.|+.....+ +..+....+...||.+|+..++|++|+..+++-+++ .+.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 5678899999999999999999998876553 455667789999999999999999999999999987 578
Q ss_pred ChhHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRLQH---------------TELALKYVKRALYL 242 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGd---------------yeeAley~ekALei 242 (1124)
|+.+-.+++..|.+++.+.. ..+|...|++.+..
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999998876 66677777666654
No 189
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.47 E-value=0.00019 Score=56.28 Aligned_cols=42 Identities=31% Similarity=0.406 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001206 212 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 253 (1124)
Q Consensus 212 ~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~ 253 (1124)
++.++++||.+|..+|++++|+.++++++.+.+.++|++||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 367899999999999999999999999999999999999985
No 190
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.0012 Score=69.98 Aligned_cols=100 Identities=19% Similarity=0.067 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 001206 216 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 295 (1124)
Q Consensus 216 y~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~ 295 (1124)
+-.-|+-++..|+|++|..-|..||+++.... ......+|.|-|.++.+++.++.|+.-+-+|+++. +.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--------pt 166 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--------PT 166 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--------ch
Confidence 34457888999999999999999999875432 34567889999999999999999999999999986 44
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 296 TAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 296 ~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
...++...|.+|.++..|++|+.-|++.+++
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 5667778899999999999999999988875
No 191
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.43 E-value=0.068 Score=65.30 Aligned_cols=192 Identities=16% Similarity=0.152 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 215 SYGDLAVFYYRLQHTELALKYVKR------ALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 215 ay~nLA~iy~~lGdyeeAley~ek------ALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
.|-.-|.+|.+..++++|++||++ |+++.+-.+ .......-...|.-+..+|+++.|+..|-+|-.+.+.+
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~kai 739 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAI 739 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence 455667888888899999999875 555544433 22334444556777788888888887765443322111
Q ss_pred ---cCCC-------------cHHHH-HHHHHHHHHHHHcCChHHHHHHHHHH-------------------HHHHHHhcC
Q 001206 289 ---LGPD-------------HIQTA-ASYHAIAIALSLMEAYPLSVQHEQTT-------------------LQILRAKLG 332 (1124)
Q Consensus 289 ---lG~d-------------~p~~A-~a~~nLA~ly~~lGd~eeAle~lekA-------------------Lei~~k~lG 332 (1124)
+|.. +..++ ..|-.+|.-|...|+|+.|.++|.++ .++..+..|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~ 819 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHG 819 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcC
Confidence 1110 01111 12445677777788888777766543 223333333
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhh---------------hhcCCC-cHHHHHHHHHHHHHHcCChH
Q 001206 333 PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASI---------------ASKGHL-SVSDLLDYINPSHDTKGRNV 396 (1124)
Q Consensus 333 ~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~---------------a~k~~~-~vaell~~Lg~~y~~qGdye 396 (1124)
++.....+....-..-..+.+..++.++--...++..+ -.+.|. .+.++...++.-|...|+..
T Consensus 820 ~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lk 899 (1636)
T KOG3616|consen 820 PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLK 899 (1636)
T ss_pred chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChh
Confidence 33222222111111112223333332222222222111 122222 35567777888888888888
Q ss_pred HHHHHHHHHHHHH
Q 001206 397 STLKRKTYVAKVK 409 (1124)
Q Consensus 397 eAl~~yekALkL~ 409 (1124)
.|...|-++-...
T Consensus 900 aae~~flea~d~k 912 (1636)
T KOG3616|consen 900 AAEEHFLEAGDFK 912 (1636)
T ss_pred HHHHHHHhhhhHH
Confidence 8887776654443
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0038 Score=70.21 Aligned_cols=120 Identities=21% Similarity=0.132 Sum_probs=92.9
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ---HTELALKYVKRALYLL 243 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lG---dyeeAley~ekALei~ 243 (1124)
+|..+.-|..||.+|..+|++..|..-|++|+.+. +++ ...+..+|.+++.+. ...++...|++++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-----g~n---~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-----GDN---PEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 67888899999999999999999999999999983 444 445666676665543 347889999999874
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 001206 244 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA 306 (1124)
Q Consensus 244 ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~l 306 (1124)
++....+++.||..++.+|+|.+|...++..|+.. ..+.+....+-..++..
T Consensus 223 -------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 223 -------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERSIARA 274 (287)
T ss_pred -------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHHH
Confidence 45567889999999999999999999999988764 34445444444444433
No 193
>PRK15331 chaperone protein SicA; Provisional
Probab=97.40 E-value=0.00084 Score=69.69 Aligned_cols=102 Identities=11% Similarity=-0.033 Sum_probs=83.9
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
........+..|.-++..|++++|..+|+-...+ + +...+.+..||.|+..+++|++|+.+|-.|..+..
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-----d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-- 102 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY-----D---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-- 102 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--
Confidence 5567788899999999999999999999766543 2 23355678999999999999999999999987632
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001206 247 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 247 ~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei 284 (1124)
++| ...+..|.+|..+|+...|+.+|+.++..
T Consensus 103 ---~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 103 ---NDY---RPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ---CCC---CccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 333 33678999999999999999999998873
No 194
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.39 E-value=0.00027 Score=55.43 Aligned_cols=42 Identities=43% Similarity=0.566 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001206 170 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 211 (1124)
Q Consensus 170 ~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~ 211 (1124)
++.++.+||.+|..+|++++|+.++++++.+.++++|.+||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 367899999999999999999999999999999999999985
No 195
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.056 Score=60.61 Aligned_cols=174 Identities=14% Similarity=0.059 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH----------HHHH
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK----------ALDI 200 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~K----------ALeI 200 (1124)
.+-.+|.+|+...+|..|-.+|++.-.+ +|.....-...|..++..+.+..|+..... ++++
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqL 117 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQL 117 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3456788899899999999999886554 566666656667777777777777654322 2222
Q ss_pred HHHh--cCCC------------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 001206 201 NERE--LGLD------------HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 266 (1124)
Q Consensus 201 ~er~--lg~D------------~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~ 266 (1124)
--.+ ...| ....+....|.|-+.++.|+|++|++-|+.|++. +.-.|. .-+++|.+.+
T Consensus 118 qaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv-----sGyqpl---lAYniALaHy 189 (459)
T KOG4340|consen 118 QAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQPL---LAYNLALAHY 189 (459)
T ss_pred HHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh-----cCCCch---hHHHHHHHHH
Confidence 1110 0011 1245667889999999999999999999999985 222333 3478999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhc----------CCC-----cH------HHHHHHHHHHHHHHHcCChHHHHHHH
Q 001206 267 GLGNVHVALRYLHKALKCNQRLL----------GPD-----HI------QTAASYHAIAIALSLMEAYPLSVQHE 320 (1124)
Q Consensus 267 ~lGdyeeAle~lekALei~~k~l----------G~d-----~p------~~A~a~~nLA~ly~~lGd~eeAle~l 320 (1124)
..++|+.|+++..+.++.-.+.. |.+ .+ ....++..-+.++.+.++++.|.+.+
T Consensus 190 ~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 190 SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 99999999999998887543221 111 00 12334555667888889998887654
No 196
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.39 E-value=0.053 Score=67.98 Aligned_cols=196 Identities=17% Similarity=0.100 Sum_probs=133.9
Q ss_pred hHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001206 126 SADGRQLLESSKTAL-DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 204 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl-~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~ 204 (1124)
...++..+.+|.+++ ...+++.|+.++.+++.++++ .........+.+.|+.+|...+... |+.++++++..++..
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 445888999999988 678999999999999998765 2222334567778899999998877 999999999988752
Q ss_pred cCCCChhHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001206 205 LGLDHPDTMKSYGDL-AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 283 (1124)
Q Consensus 205 lg~D~p~~a~ay~nL-A~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALe 283 (1124)
.+.....++.-+ ...+...+++..|++.++....+..... +......+....|.+....+..+++++.++++..
T Consensus 133 ---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~--d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 133 ---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRG--DPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred ---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 222233333333 3333333899999999999988775432 2333444555567788888989999999999988
Q ss_pred HHHHh--cCCCcHHHHHHHHHHHH--HHHHcCChHHHHHHHHHHHHHHHH
Q 001206 284 CNQRL--LGPDHIQTAASYHAIAI--ALSLMEAYPLSVQHEQTTLQILRA 329 (1124)
Q Consensus 284 i~~k~--lG~d~p~~A~a~~nLA~--ly~~lGd~eeAle~lekALei~~k 329 (1124)
..... .+..++....++..+-. ++...|+++.+...+++.-+.+..
T Consensus 208 ~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 208 QARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred HHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 77644 12223334444444443 344677877887777655555443
No 197
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.38 E-value=0.057 Score=68.05 Aligned_cols=228 Identities=11% Similarity=-0.050 Sum_probs=135.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001206 175 SLLAVVLYHTGDFNQATIYQQKALDINEREL-GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 253 (1124)
Q Consensus 175 ~nLG~ly~~lGdydeAle~~~KALeI~er~l-g~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~ 253 (1124)
...|+......+|++|..+..++......-. +......+....--|.+....|++++|+++.+.++...-.. ....
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~---~~~~ 495 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA---AYRS 495 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---cchh
Confidence 3456677788999999988877765543210 00111233444556788889999999999999999864321 1233
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 001206 254 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 333 (1124)
Q Consensus 254 ~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~ 333 (1124)
.+.++..+|.+..-+|++++|+.+.+++.++.++. ........+....+.++..+|+...| ...++....+.....
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~--~~~~l~~~~~~~~s~il~~qGq~~~a--~~~~~~~~~~~q~l~ 571 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQMARQH--DVYHLALWSLLQQSEILEAQGQVARA--EQEKAFNLIREQHLE 571 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHhh
Confidence 56788999999999999999999999999998776 22334456667788899999943333 233333332222222
Q ss_pred C---CHHHHHHHHHHHHHHHH-hHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 334 D---DLRTQDAAAWLEYFESK-AFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 409 (1124)
Q Consensus 334 d---h~~t~~a~~~La~l~~k-~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~ 409 (1124)
. |.........+.+.... ....+++........ ......+ ...-.+..|+.++..+|++++|.........+.
T Consensus 572 q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~--~~~~~~~-~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 572 QKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGS--VYTPQPL-LSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred hcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhh--hcccchh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 1 22222222222222221 111111111111000 0001111 112233689999999999999999998877776
Q ss_pred hhh
Q 001206 410 GNF 412 (1124)
Q Consensus 410 ~sl 412 (1124)
...
T Consensus 649 ~~~ 651 (894)
T COG2909 649 LNG 651 (894)
T ss_pred cCC
Confidence 554
No 198
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.34 E-value=0.00096 Score=75.26 Aligned_cols=98 Identities=20% Similarity=0.146 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
+..+-+.|..|+.+|+|++|+++|.+++.+ +|...-.+.+.|..|+.+..|..|..-+..|+.+-.
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------ 162 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK------ 162 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------
Confidence 344678899999999999999999999977 566667889999999999999999999999999843
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
....+|...|..-..+|+..+|.+-++.+|++
T Consensus 163 --~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 163 --LYVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred --HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 35788999999999999999999999999986
No 199
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0028 Score=71.22 Aligned_cols=120 Identities=18% Similarity=0.114 Sum_probs=96.8
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 001206 119 HKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG---DFNQATIYQQ 195 (1124)
Q Consensus 119 ~K~~~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lG---dydeAle~~~ 195 (1124)
..++.....+++.+.-+|.+|+.+|++..|...|.+|+++ .+.....+..+|.+++.+. .-.++..+++
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3456667778889999999999999999999999999988 4566678888998887764 3567888899
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 001206 196 KALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATY 258 (1124)
Q Consensus 196 KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al 258 (1124)
+++.. ++...++++.||..++..|+|.+|...++..++.. ..+.+....+-
T Consensus 218 ~al~~--------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie 268 (287)
T COG4235 218 QALAL--------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIE 268 (287)
T ss_pred HHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHH
Confidence 88875 45567899999999999999999999999988753 34455444433
No 200
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.32 E-value=0.0027 Score=67.46 Aligned_cols=104 Identities=21% Similarity=0.199 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..+-.-|.-++..|+|++|..-|..||.++.... ......+|.+.|.++..++.++.|+.-+.|||++
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------- 163 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIEL------- 163 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-------
Confidence 456677889999999999999999999999975432 2456778999999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
.|....++...|.+|-.+.+|++|++-|++.+++
T Consensus 164 -~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 164 -NPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred -CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3556778888899999999999999999999885
No 201
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.29 E-value=0.02 Score=69.40 Aligned_cols=184 Identities=17% Similarity=0.070 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----h
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER----E 204 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er----~ 204 (1124)
++.+...|..|...|+++.|..+|++|...-- +.-.+++.+|..-|..-....+++.|+.+.++|+.+-.. .
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y----~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~ 462 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPY----KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEY 462 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc----cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhh
Confidence 44567789999999999999999999987621 122456888999999999999999999999998765221 1
Q ss_pred cCCCChhHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 001206 205 LGLDHPDTM------KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 278 (1124)
Q Consensus 205 lg~D~p~~a------~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~l 278 (1124)
+...+|-.. .++..++.+.-..|-++.....|.+.+++.- .+..+..|.|..+....-+++|.+.|
T Consensus 463 yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri--------aTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 463 YDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI--------ATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred hcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 122233222 3445556666666777777777777777532 22345567788888888888888888
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 279 HKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 279 ekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
++.+.++. . +.-.+.-..|.....--+.--..+.|..+|++|++.+
T Consensus 535 ErgI~LFk-~--p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C 580 (835)
T KOG2047|consen 535 ERGISLFK-W--PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC 580 (835)
T ss_pred HcCCccCC-C--ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 88877652 1 1111222223322222223345677888888877743
No 202
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.29 E-value=0.0095 Score=72.24 Aligned_cols=178 Identities=13% Similarity=-0.006 Sum_probs=118.2
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 001206 141 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDINERELGLDHPDTMKSY 216 (1124)
Q Consensus 141 ~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~----lGdydeAle~~~KALeI~er~lg~D~p~~a~ay 216 (1124)
-.||-+.+++++.++.+- ..+.++.-......|+..-..+.. ..+.+.|...+...+.. +|+-...+
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~s~lfl 270 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPNSALFL 270 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCCcHHHH
Confidence 368889999998887541 111110000111122222222221 23345555555554443 46667788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 001206 217 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 296 (1124)
Q Consensus 217 ~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~ 296 (1124)
...|.++...|+.++|+++|++++...... ......+++.+|.++..+.+|++|..+|.+.++.. ....
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------~WSk 339 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-------KWSK 339 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-------ccHH
Confidence 899999999999999999999998533221 12235678999999999999999999999887743 2335
Q ss_pred HHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHHhcCCCCHHH
Q 001206 297 AASYHAIAIALSLMEAY-------PLSVQHEQTTLQILRAKLGPDDLRT 338 (1124)
Q Consensus 297 A~a~~nLA~ly~~lGd~-------eeAle~lekALei~~k~lG~dh~~t 338 (1124)
+..++..|.+|...|+. ++|..+++++-.+..+..|..-|.-
T Consensus 340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E 388 (468)
T PF10300_consen 340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLE 388 (468)
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChH
Confidence 66677889999999999 7788888887777776666554433
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.28 E-value=0.017 Score=61.03 Aligned_cols=158 Identities=18% Similarity=0.052 Sum_probs=112.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001206 139 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 218 (1124)
Q Consensus 139 yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~n 218 (1124)
..++=|-+.+..-..+.+++. -+..-.+.||..+..+|++.+|..+|++++.-. ..+....+..
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~A---------pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~lLg 129 (251)
T COG4700 66 LQQKLDPERHLREATEELAIA---------PTVQNRYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAMLLG 129 (251)
T ss_pred HHHhcChhHHHHHHHHHHhhc---------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHHHHH
Confidence 334445555554444444442 233456789999999999999999999998631 2223556788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 001206 219 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 298 (1124)
Q Consensus 219 LA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~ 298 (1124)
++...+..+++..|...+++..+.- + .-........+|..|..+|++.+|...|+.++..+ ++ + .+.
T Consensus 130 lA~Aqfa~~~~A~a~~tLe~l~e~~-----p-a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-----pg-~-~ar 196 (251)
T COG4700 130 LAQAQFAIQEFAAAQQTLEDLMEYN-----P-AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY-----PG-P-QAR 196 (251)
T ss_pred HHHHHHhhccHHHHHHHHHHHhhcC-----C-ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-----CC-H-HHH
Confidence 9999999999999999998877642 1 11123345568999999999999999999999886 22 1 344
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 299 SYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 299 a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
++ .+..+.++|+.++|...+....+..
T Consensus 197 ~~--Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 197 IY--YAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred HH--HHHHHHHhcchhHHHHHHHHHHHHH
Confidence 44 4888899999999988776555543
No 204
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.025 Score=62.94 Aligned_cols=265 Identities=13% Similarity=-0.003 Sum_probs=155.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----------
Q 001206 133 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE---------- 202 (1124)
Q Consensus 133 l~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~e---------- 202 (1124)
+++|+......++++|+..|.+.|..-...-.....+.-.+...|+.+|...|++..--+.....-+..+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 5667777888899999999988876511000001123345778899999999887543333222211111
Q ss_pred ------HhcC-CCC-hhHH--------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001206 203 ------RELG-LDH-PDTM--------------------KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 254 (1124)
Q Consensus 203 ------r~lg-~D~-p~~a--------------------~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~ 254 (1124)
+.-+ .|+ ++.. ..-..+..+++..|+|.+|+....-.+.-+++.- +.+..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D--DK~~L 164 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD--DKINL 164 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--Cccce
Confidence 1101 111 1111 1124567788888888888888888777666643 44555
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 001206 255 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 334 (1124)
Q Consensus 255 a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~d 334 (1124)
...+..-..+|....+..++..-+..|-......+-+. ...+..-..-|.+++.-.+|.-|..||-+|++-|.. +..
T Consensus 165 i~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPp-qlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~--l~~ 241 (421)
T COG5159 165 ITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPP-QLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL--LKM 241 (421)
T ss_pred eehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCH-HHHHHHHHhccceeeccccchhHHHHHHHHHhcccc--ccc
Confidence 66666667788888888888777776665554332211 112333333466777888999999999999988743 455
Q ss_pred CHHHHHHHHHHH--HHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHH--HHcCChHHHHHHHHHHHH
Q 001206 335 DLRTQDAAAWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH--DTKGRNVSTLKRKTYVAK 407 (1124)
Q Consensus 335 h~~t~~a~~~La--~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y--~~qGdyeeAl~~yekALk 407 (1124)
|......+.++. .+.....+.-++.......... -.....+++..++.+| +...+|..|+..|..-+.
T Consensus 242 d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~-----y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~ 313 (421)
T COG5159 242 DVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKH-----YDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELH 313 (421)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhh-----hhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhc
Confidence 655554544432 3344444444444433222110 0112345666777777 456788899988876553
No 205
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.26 E-value=0.15 Score=60.41 Aligned_cols=244 Identities=15% Similarity=0.057 Sum_probs=139.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001206 134 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 213 (1124)
Q Consensus 134 ~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a 213 (1124)
..|..-..++++..|...|++||.. ++ .....+...+.+-+.......|...+.+|+.++- .+-
T Consensus 78 kYaqwEesq~e~~RARSv~ERALdv-------d~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP--------RVd 141 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALDV-------DY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP--------RVD 141 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhc-------cc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc--------hHH
Confidence 3344445556666666666666643 33 3345677788888888888888888888888753 334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------HHHHhcCCCChhHHHHHHHHHHHHHH
Q 001206 214 KSYGDLAVFYYRLQHTELALKYVKRALY--------------------------LLHLTCGPSHPNTAATYINVAMMEEG 267 (1124)
Q Consensus 214 ~ay~nLA~iy~~lGdyeeAley~ekALe--------------------------i~ek~~G~dhp~~a~al~nLA~iy~~ 267 (1124)
..++..-.+.-.+|+..-|...|++-+. |++... --||. ...+...|..-..
T Consensus 142 qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV-~~HP~-v~~wikyarFE~k 219 (677)
T KOG1915|consen 142 QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFV-LVHPK-VSNWIKYARFEEK 219 (677)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh-eeccc-HHHHHHHHHHHHh
Confidence 4455555555556666666666655433 211110 12554 4566777888888
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 001206 268 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 347 (1124)
Q Consensus 268 lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~ 347 (1124)
.|+..-|...|.+|++.. .+.......+...|..-..+..++.|...|+-|++-.. .+ ++......+..
T Consensus 220 ~g~~~~aR~VyerAie~~-----~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~p----k~--raeeL~k~~~~ 288 (677)
T KOG1915|consen 220 HGNVALARSVYERAIEFL-----GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIP----KG--RAEELYKKYTA 288 (677)
T ss_pred cCcHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cc--cHHHHHHHHHH
Confidence 999999999999998876 23334455666677777778888888888877765421 11 11222222222
Q ss_pred HHHHhHHHH---HHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 348 FESKAFEQQ---EAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 407 (1124)
Q Consensus 348 l~~k~~e~a---eAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALk 407 (1124)
+..+-++.. .++. +.........-..++.--+.++..-.+....|+.+.-...|++|+.
T Consensus 289 fEKqfGd~~gIEd~Iv-~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 289 FEKQFGDKEGIEDAIV-GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred HHHHhcchhhhHHHHh-hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 222222111 1111 1111111111111222224444444556777888888888888875
No 206
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.26 E-value=0.015 Score=69.21 Aligned_cols=128 Identities=19% Similarity=0.107 Sum_probs=101.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh------
Q 001206 137 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP------ 210 (1124)
Q Consensus 137 ~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p------ 210 (1124)
.......+...-+++.++||++ +++.+.+|..||.-. ..-..+|+++|++|++..+..++.+..
T Consensus 176 q~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 3446778899999999999998 578888998887632 234789999999999998887765311
Q ss_pred -----------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 001206 211 -----------DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH 279 (1124)
Q Consensus 211 -----------~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~le 279 (1124)
-...+...||.|.+++|+.++|++.++..++.. ...+...+..||..++..++.|.++..++.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------CccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 124456789999999999999999999987642 122356789999999999999999988877
Q ss_pred H
Q 001206 280 K 280 (1124)
Q Consensus 280 k 280 (1124)
+
T Consensus 320 k 320 (539)
T PF04184_consen 320 K 320 (539)
T ss_pred H
Confidence 6
No 207
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.25 E-value=0.032 Score=72.49 Aligned_cols=169 Identities=15% Similarity=0.030 Sum_probs=124.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001206 132 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 211 (1124)
Q Consensus 132 Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~ 211 (1124)
++..-..+++.++.+.|.+.+++||...--.-+..-..+..+|.||=..| |.-+...+.|++|.+++.
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd--------- 1528 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCD--------- 1528 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcc---------
Confidence 33334456788999999999999997641000011122334555554444 566677788888888752
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 212 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 291 (1124)
Q Consensus 212 ~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~ 291 (1124)
-...|..|.-+|..-+++++|.++|++.++-+. ....+|..+|..++.+.+-+.|..++++||....+ .
T Consensus 1529 ~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk---~ 1597 (1710)
T KOG1070|consen 1529 AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK---Q 1597 (1710)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch---h
Confidence 345788899999999999999999999888653 24567888999999999999999999999998743 2
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 292 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 292 d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
.| .......|.+.++.|+-+.+...|+..+..
T Consensus 1598 eH---v~~IskfAqLEFk~GDaeRGRtlfEgll~a 1629 (1710)
T KOG1070|consen 1598 EH---VEFISKFAQLEFKYGDAERGRTLFEGLLSA 1629 (1710)
T ss_pred hh---HHHHHHHHHHHhhcCCchhhHHHHHHHHhh
Confidence 34 345566789999999999998888876654
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.024 Score=62.58 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.....+.+..+++-.|.|.-.+..+.+.++. +.+.-......||.+.++.||...|..||++.-+...++.+.
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~ 248 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL 248 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc
Confidence 3566777788888889999999999888773 234555678899999999999999999999776555444332
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
........|.+.+|...++|..|...|.+++.. ++..+.+-+|-|.|+..+|+..+|++.++.++.+.
T Consensus 249 --q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~-- 316 (366)
T KOG2796|consen 249 --QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD-- 316 (366)
T ss_pred --chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--
Confidence 224567789999999999999999999888763 45567778899999999999999999999888764
Q ss_pred hcCCCcHHHHHHHHHHHHHHH
Q 001206 288 LLGPDHIQTAASYHAIAIALS 308 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~ 308 (1124)
+.+...-...++|..+|.
T Consensus 317 ---P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 317 ---PRHYLHESVLFNLTTMYE 334 (366)
T ss_pred ---CccchhhhHHHHHHHHHH
Confidence 333333344555555543
No 209
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.21 E-value=0.019 Score=56.62 Aligned_cols=122 Identities=23% Similarity=0.212 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHhcCC---CChh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 169 MTAGAYSLLAVVL--YHTGDFNQATIYQQKALDINERELGL---DHPD-TMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 169 ~~A~ay~nLG~ly--~~lGdydeAle~~~KALeI~er~lg~---D~p~-~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
..+.+|..|+..- +.-|-|++|..-+++|+++.+.+-.. ||.. .+.++..|+..+..+|+|++++.--.++|..
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 3456677666544 45688999999999999998655322 2221 3567888999999999999999999999998
Q ss_pred HHHhcCCCChh----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 243 LHLTCGPSHPN----TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 291 (1124)
Q Consensus 243 ~ek~~G~dhp~----~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~ 291 (1124)
+... |.-|.+ ++.+.++-|..+..+|+.++|+..|+.+-++..+.-|.
T Consensus 85 FNRR-GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 85 FNRR-GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HHHH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred Hhhc-cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 8664 333333 45667788999999999999999999999988776543
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.17 E-value=0.0016 Score=57.54 Aligned_cols=59 Identities=31% Similarity=0.380 Sum_probs=53.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 219 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 219 LA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
|..+|+..++|++|++++++++.+ +|.....+...|.+|..+|++++|+..|+++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467899999999999999999986 56677889999999999999999999999999775
No 211
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.16 E-value=0.006 Score=62.16 Aligned_cols=106 Identities=18% Similarity=0.143 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 170 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 249 (1124)
Q Consensus 170 ~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~ 249 (1124)
....++.-|...+..|+|.+|++.|+....-+ +-.+....+...||.+|+..++|++|+..+++-+++ .+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP 78 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HP 78 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC
Confidence 45678888999999999999999988765532 334456678999999999999999999999999886 57
Q ss_pred CChhHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHH
Q 001206 250 SHPNTAATYINVAMMEEGLGN---------------VHVALRYLHKALKCN 285 (1124)
Q Consensus 250 dhp~~a~al~nLA~iy~~lGd---------------yeeAle~lekALei~ 285 (1124)
.|+....+++..|.++..+.. ..+|...|++.+..+
T Consensus 79 ~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 79 THPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 899999999999999998876 667777777776655
No 212
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.035 Score=61.61 Aligned_cols=142 Identities=17% Similarity=0.134 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 173 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 252 (1124)
Q Consensus 173 ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp 252 (1124)
....-|.+|.+-|++++|+....+...+ .++..--.++.++.+++-|...++++.++-+
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ide-------- 168 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDE-------- 168 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccch--------
Confidence 4445567889999999999877663222 2233334567788888888888888776522
Q ss_pred hHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 001206 253 NTAATYINVAMMEEGL----GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 328 (1124)
Q Consensus 253 ~~a~al~nLA~iy~~l----GdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~ 328 (1124)
-.++..||..|... +++.+|.-+|++ ..+. .+.+..++..+|.++..+|+|++|...++.++.-
T Consensus 169 --d~tLtQLA~awv~la~ggek~qdAfyifeE-------~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-- 236 (299)
T KOG3081|consen 169 --DATLTQLAQAWVKLATGGEKIQDAFYIFEE-------LSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-- 236 (299)
T ss_pred --HHHHHHHHHHHHHHhccchhhhhHHHHHHH-------Hhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 23455566655542 345555555554 3222 2345677888999999999999999999998864
Q ss_pred HhcCCCCHHHHHHHHHHHHHHH
Q 001206 329 AKLGPDDLRTQDAAAWLEYFES 350 (1124)
Q Consensus 329 k~lG~dh~~t~~a~~~La~l~~ 350 (1124)
...++.++..+..++....
T Consensus 237 ---d~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 237 ---DAKDPETLANLIVLALHLG 255 (299)
T ss_pred ---cCCCHHHHHHHHHHHHHhC
Confidence 3455666555544444433
No 213
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.14 E-value=0.0046 Score=67.38 Aligned_cols=101 Identities=20% Similarity=0.122 Sum_probs=83.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-----ChhHHHH
Q 001206 141 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD-----HPDTMKS 215 (1124)
Q Consensus 141 ~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D-----~p~~a~a 215 (1124)
....+++|+..|.-|+-.++. .+..+...+.++..+|++|..+|+.+....++++|++.+++.+... ..+...+
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 456788999999988876543 3556668899999999999999999999999999999988776433 2245678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 216 YGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 216 y~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
++.+|.++.+.|++++|.++|.+++..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 889999999999999999999998863
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.14 E-value=0.0021 Score=56.77 Aligned_cols=58 Identities=28% Similarity=0.385 Sum_probs=52.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 177 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 177 LG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
|..+|...++|++|+.++++++.+ +|+....+..+|.+|..+|++.+|++.|+++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 467899999999999999999998 4667888999999999999999999999999975
No 215
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.08 E-value=0.029 Score=62.14 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 213 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 292 (1124)
Q Consensus 213 a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d 292 (1124)
+..+++-|...++.|+|++|.++|+..... -+..+..-.++..++.++.+.++|++|+.+.++-+.+. +.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CC
Confidence 556788899999999999999999987642 22345557788899999999999999999999988876 77
Q ss_pred cHHHHHHHHHHHHHHHHc-----CChH---HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccC
Q 001206 293 HIQTAASYHAIAIALSLM-----EAYP---LSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTR 364 (1124)
Q Consensus 293 ~p~~A~a~~nLA~ly~~l-----Gd~e---eAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~ 364 (1124)
|+....+++..|.++... .|.. +|+.-|++.++-+ |+..-+.++...+.++.......
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~--------- 169 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGH--------- 169 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHH---------
Confidence 888888888888887633 2222 3333333333322 55555555665555443322211
Q ss_pred CCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 365 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 408 (1124)
Q Consensus 365 ~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL 408 (1124)
=..+|..|.+.|.+..|+..++..++-
T Consensus 170 -----------------Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 170 -----------------EMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred -----------------HHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 123556666666666666666655543
No 216
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.003 Score=68.70 Aligned_cols=104 Identities=19% Similarity=0.235 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
..+..+-+.|..|+...+|..|+..|.+|+.+ .|..+..|.+-|.+|+.+.+++.+..-.++|+++
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql------ 73 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL------ 73 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc------
Confidence 34667778888999999999999999999977 6788889999999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
.++.+...+.||.++.....|++|+..+++|+.+.+..
T Consensus 74 --~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 74 --DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred --ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 47789999999999999999999999999999887654
No 217
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.99 E-value=0.0074 Score=65.78 Aligned_cols=101 Identities=16% Similarity=0.145 Sum_probs=82.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----ChhHHHHH
Q 001206 184 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-----HPNTAATY 258 (1124)
Q Consensus 184 lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~d-----hp~~a~al 258 (1124)
...+++|+..|.-|+-.++. .+.++...+.++..+|++|..+|+.+....++++|++.+.+.+... ......++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 45788999999888877654 3556667899999999999999999999999999999887765332 23456788
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 259 INVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 259 ~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
+.+|.++.+.|++++|..+|.+++...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 899999999999999999999988753
No 218
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.99 E-value=0.0019 Score=56.21 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=47.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001206 139 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 200 (1124)
Q Consensus 139 yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI 200 (1124)
++..|+|++|+.+|++++.. +|....++..||.+|...|++++|..++++++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35789999999999999987 6777889999999999999999999999998775
No 219
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.94 E-value=0.0022 Score=55.89 Aligned_cols=53 Identities=26% Similarity=0.320 Sum_probs=46.4
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 182 YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 182 ~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
...|+|++|+.+|++++.. +|+...++..||.+|...|++++|..++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5689999999999999987 4666788899999999999999999999998863
No 220
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.88 E-value=0.055 Score=53.44 Aligned_cols=118 Identities=23% Similarity=0.169 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CCc-hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YHR-MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~---d~p-~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
..+..|...+..|-|++|..-+++|+++...+-.. +|. .-+-|+..|+..+..+|+|++++....++|..+.+. |
T Consensus 11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR-G 89 (144)
T PF12968_consen 11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR-G 89 (144)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc-c
Confidence 33444666778899999999999999997765322 121 236788899999999999999999999999998764 3
Q ss_pred CCChh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 207 LDHPD----TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 249 (1124)
Q Consensus 207 ~D~p~----~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~ 249 (1124)
.-+.+ .+.+.++-|..+..+|+.++|+..|+.+-++..+..|.
T Consensus 90 EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 90 ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp -TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 33333 45667889999999999999999999999987765553
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.87 E-value=0.087 Score=64.01 Aligned_cols=133 Identities=20% Similarity=0.024 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 001206 143 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 222 (1124)
Q Consensus 143 GdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~i 222 (1124)
...+.|.+++...+.. .|.-+-.+...|.++...|+.++|++.|++++....... .-...+++.+|.+
T Consensus 247 ~~~~~a~~lL~~~~~~--------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~----Ql~~l~~~El~w~ 314 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK----QLHHLCYFELAWC 314 (468)
T ss_pred CCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH----hHHHHHHHHHHHH
Confidence 3455566666655544 466677888999999999999999999999985332211 1124578999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHhcCCCcH
Q 001206 223 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-------HVALRYLHKALKCNQRLLGPDHI 294 (1124)
Q Consensus 223 y~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdy-------eeAle~lekALei~~k~lG~d~p 294 (1124)
+..+.+|++|.++|.+.++. +.-..+...+..|.+|...|+. ++|.++|.++-.+..+..|...|
T Consensus 315 ~~~~~~w~~A~~~f~~L~~~-------s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 315 HMFQHDWEEAAEYFLRLLKE-------SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred HHHHchHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 99999999999999998763 2233466667889999999999 88888888888887776665544
No 222
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.86 E-value=0.019 Score=60.74 Aligned_cols=126 Identities=18% Similarity=0.111 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 001206 193 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 272 (1124)
Q Consensus 193 ~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdye 272 (1124)
-++.-|.-++..++ ...+..++..+|..|.+.|++++|+++|.++.+.+. .....+..+.++-.+....+++.
T Consensus 18 ~Le~elk~~~~n~~--kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~ 90 (177)
T PF10602_consen 18 KLEAELKDAKSNLG--KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWS 90 (177)
T ss_pred HHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHH
Confidence 34444444444333 355788999999999999999999999999887532 23456788889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 273 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 273 eAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
....++.+|-.+.... .+-.........-|..+...++|.+|...|-.+...+
T Consensus 91 ~v~~~i~ka~~~~~~~--~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 91 HVEKYIEKAESLIEKG--GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 9999999999988652 2222233344455777778899999999888776544
No 223
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.83 E-value=0.0037 Score=70.66 Aligned_cols=96 Identities=17% Similarity=0.117 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001206 174 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 253 (1124)
Q Consensus 174 y~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~ 253 (1124)
+-..|.-|+.+|.|++|+.+|.+++.+ +|.....+.|.|..|+++..|..|+.-+..|+.+- ..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HH
Confidence 345688999999999999999999987 35456678999999999999999999999999873 34
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 254 TAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 254 ~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
...+|..-|.+...+|...+|.+-++.+|++-
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 57889999999999999999999999999874
No 224
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.81 E-value=0.011 Score=67.28 Aligned_cols=136 Identities=24% Similarity=0.190 Sum_probs=91.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 132 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELGLDH 209 (1124)
Q Consensus 132 Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lG--dydeAle~~~KALeI~er~lg~D~ 209 (1124)
+.-.-.+++..++++.|.+.++...++ +.+..-+....|++....| .+.+|...|+...+ ..
T Consensus 134 ~al~Vqi~L~~~R~dlA~k~l~~~~~~--------~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--------~~ 197 (290)
T PF04733_consen 134 LALAVQILLKMNRPDLAEKELKNMQQI--------DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD--------KF 197 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHCC--------SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------cc
Confidence 334556888999999999888775433 2233333344455555555 57888888877432 22
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHh
Q 001206 210 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-HVALRYLHKALKCNQRL 288 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdy-eeAle~lekALei~~k~ 288 (1124)
+.+..+++.+|.++..+|+|++|.+.+++|+. ..+....++.|++.+...+|+. +.+.+++.+.....
T Consensus 198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~--- 266 (290)
T PF04733_consen 198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN--- 266 (290)
T ss_dssp --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT---
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC---
Confidence 34567889999999999999999999999875 2345577899999999999998 55666666544432
Q ss_pred cCCCcHHH
Q 001206 289 LGPDHIQT 296 (1124)
Q Consensus 289 lG~d~p~~ 296 (1124)
++|+.+
T Consensus 267 --p~h~~~ 272 (290)
T PF04733_consen 267 --PNHPLV 272 (290)
T ss_dssp --TTSHHH
T ss_pred --CCChHH
Confidence 566644
No 225
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.81 E-value=0.15 Score=58.40 Aligned_cols=253 Identities=15% Similarity=0.102 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR-MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p-~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
...+..+...+..++++++..++.++.......+..... ....+|..|..+ ..+.+++++..+.......
T Consensus 30 ~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l-q~L~Elee~~~~~~~~~~~-------- 100 (352)
T PF02259_consen 30 EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL-QQLVELEEIIELKSNLSQN-------- 100 (352)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-hHHHHHHHHHHHHHhhccc--------
Confidence 334455556678999999999999998876544322111 122333333222 2233344444433221100
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG--PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G--~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
+...... +-..-.+...........+..+.+...++. ......+.++..++.+....|+++.|..++.++.....
T Consensus 101 -~~~~~~l--~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~ 177 (352)
T PF02259_consen 101 -PQDLKSL--LKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNP 177 (352)
T ss_pred -HHHHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC
Confidence 0000000 111111122222233344444444443332 12456778899999999999999999999998776531
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCC
Q 001206 287 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ-ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 365 (1124)
Q Consensus 287 k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALe-i~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~ 365 (1124)
.. ......+.+..+.++...|+..+|+..++..+. .+....+...... ...++.. .....
T Consensus 178 ~~----~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~--~~~~~~~-------------~~~~~ 238 (352)
T PF02259_consen 178 SS----ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAE--LKSGLLE-------------SLEVI 238 (352)
T ss_pred cc----cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHH--Hhhcccc-------------ccccc
Confidence 11 111345666779999999999999999988777 3332222111111 0001000 00000
Q ss_pred CchhhhhcCCCcHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHhhhc
Q 001206 366 PDASIASKGHLSVSDLLDYINPSHDTK------GRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 366 ~~~~~a~k~~~~vaell~~Lg~~y~~q------GdyeeAl~~yekALkL~~sl~ 413 (1124)
.............+.++..+|...... +..++++.+|++++++.+..+
T Consensus 239 ~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 239 SSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 000001111123456777888887777 889999999999999988766
No 226
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.083 Score=60.31 Aligned_cols=262 Identities=12% Similarity=0.001 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLY-HTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~-~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
...+++|..+...|++++-..+....-..+..+. ....+.....|-..+. .-+.++.-+.++..+++-..+.. .
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--R 123 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--R 123 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--H
Confidence 4578889999999999887777766655554431 2233444444433332 33445566677777776654421 0
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
..-....-..|..+|+..++|.+|+......+.-+++.- |.......+..=..+|+.+.+..+|...+..|-.....+
T Consensus 124 tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlD--DK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai 201 (411)
T KOG1463|consen 124 TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLD--DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI 201 (411)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc
Confidence 111223345688999999999999999999888777753 344455556666778888899999988888777665444
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHhHHHHHHHHhccCCC
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKP 366 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La--~l~~k~~e~aeAl~~~~~~~ 366 (1124)
+-+. ...+..-..=|.++..-.||.-|..||-+|++-|... .++.....++.++. .+.....+.-.++.......
T Consensus 202 YcpP-qlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~--~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l 278 (411)
T KOG1463|consen 202 YCPP-QLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL--DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLAL 278 (411)
T ss_pred ccCH-HHHHHHHHhccceeecccccchHHHHHHHHHcccccc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHH
Confidence 3221 1223334455777788899999999999999887543 34455555555443 23333333333332221111
Q ss_pred chhhhhcCCCcHHHHHHHHHHHH--HHcCChHHHHHHHHHHHH
Q 001206 367 DASIASKGHLSVSDLLDYINPSH--DTKGRNVSTLKRKTYVAK 407 (1124)
Q Consensus 367 ~~~~a~k~~~~vaell~~Lg~~y--~~qGdyeeAl~~yekALk 407 (1124)
. ......+++..++.++ +...+|+.|+..|+.-+.
T Consensus 279 ~------y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~ 315 (411)
T KOG1463|consen 279 K------YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELA 315 (411)
T ss_pred h------ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHh
Confidence 1 1112235667777777 446788899988887665
No 227
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.75 E-value=0.66 Score=57.12 Aligned_cols=32 Identities=9% Similarity=0.117 Sum_probs=22.4
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001206 166 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 197 (1124)
Q Consensus 166 d~p~~A~ay~nLG~ly~~lGdydeAle~~~KA 197 (1124)
++...-.++.++|..+..+..+++|.+||.+.
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455667777777777777777777777654
No 228
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.72 E-value=0.34 Score=60.87 Aligned_cols=156 Identities=18% Similarity=0.103 Sum_probs=112.2
Q ss_pred CchhHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 167 HRMTAGAYSLLAVVLY-HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~-~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
...-+.++..||.+|+ +..+++.|..++.|++.++++ .+- ......+..-|+.+|.+.+... |+.+++++++.++.
T Consensus 55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~-~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRL-TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cch-HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 3456788999999887 889999999999999999876 111 1123556667899999888777 99999999998876
Q ss_pred hcCCCChhHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001206 246 TCGPSHPNTAATYINV-AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 324 (1124)
Q Consensus 246 ~~G~dhp~~a~al~nL-A~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekAL 324 (1124)
. .+......+..+ ...+...+++..|++.++....+.... .+......+....+.++...+..+++++.++++.
T Consensus 132 ~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 132 Y---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred c---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 2 222233333333 333333489999999999999887543 2223334455556777778888899999999998
Q ss_pred HHHHHh
Q 001206 325 QILRAK 330 (1124)
Q Consensus 325 ei~~k~ 330 (1124)
......
T Consensus 207 ~~~~~~ 212 (608)
T PF10345_consen 207 AQARSL 212 (608)
T ss_pred HHHhhc
Confidence 776654
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.72 E-value=0.17 Score=59.45 Aligned_cols=154 Identities=13% Similarity=0.019 Sum_probs=97.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001206 142 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 221 (1124)
Q Consensus 142 qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~ 221 (1124)
...|..|...+.++|...++.++........+..+|=..|....+|+.-+.+.+..-.+ ...+......+....|.
T Consensus 112 re~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yaf 187 (374)
T PF13281_consen 112 RERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAF 187 (374)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHH
Confidence 44455566667777777666655444455667778888899999999888777654333 11122334556677888
Q ss_pred HHHH---cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhc
Q 001206 222 FYYR---LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL---------GNVHVALRYLHKALKCNQRLL 289 (1124)
Q Consensus 222 iy~~---lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~l---------GdyeeAle~lekALei~~k~l 289 (1124)
++.+ .|+.++|+..+..++.- .......++.-+|.+|-.+ ..+++|+.+|.++.++..
T Consensus 188 ALnRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~--- 257 (374)
T PF13281_consen 188 ALNRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP--- 257 (374)
T ss_pred HHhhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc---
Confidence 8888 99999999999887553 2223355677788877643 235566666666665531
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHH
Q 001206 290 GPDHIQTAASYHAIAIALSLMEAYPL 315 (1124)
Q Consensus 290 G~d~p~~A~a~~nLA~ly~~lGd~ee 315 (1124)
....-.|++.++...|...+
T Consensus 258 ------~~Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 258 ------DYYSGINAATLLMLAGHDFE 277 (374)
T ss_pred ------cccchHHHHHHHHHcCCccc
Confidence 12233456666666665433
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.72 E-value=1 Score=52.57 Aligned_cols=232 Identities=13% Similarity=-0.056 Sum_probs=144.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001206 134 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT-AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 212 (1124)
Q Consensus 134 ~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~-A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~ 212 (1124)
--++..+..|+|+.|.+-|+-.+. +|++ .--+..|-.--..+|+.+.|..|.+.|.... |.+
T Consensus 125 LeAQaal~eG~~~~Ar~kfeAMl~---------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l 187 (531)
T COG3898 125 LEAQAALLEGDYEDARKKFEAMLD---------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQL 187 (531)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc---------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCC
Confidence 345667789999999999987664 2332 2223333344467899999999999987764 334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 001206 213 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN--TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 290 (1124)
Q Consensus 213 a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~--~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG 290 (1124)
..+...+=...+..|+|+.|+++.+....... .+++--+ .+..+..-+.... .-+...|...-.+++++.
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v--ie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~----- 259 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRAAKV--IEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLA----- 259 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHHHh--hchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcC-----
Confidence 44444444556789999999999988776432 2223222 2222322232222 235677777777777764
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHhHHHHHHHHhccCCCch
Q 001206 291 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKPDA 368 (1124)
Q Consensus 291 ~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La--~l~~k~~e~aeAl~~~~~~~~~ 368 (1124)
++..-.-..-+..|...|+..++-..++.+++. +-||.....+.... .......+.++.+. ...
T Consensus 260 ---pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia~lY~~ar~gdta~dRlkRa~~L~--slk--- 325 (531)
T COG3898 260 ---PDLVPAAVVAARALFRDGNLRKGSKILETAWKA------EPHPDIALLYVRARSGDTALDRLKRAKKLE--SLK--- 325 (531)
T ss_pred ---CccchHHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHHHHHHHhcCCCcHHHHHHHHHHHH--hcC---
Confidence 333344445688899999999999999888874 56887765554432 11111222222221 111
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 369 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 369 ~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
++..+....++......|++..|...-+.+.++...
T Consensus 326 -------~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr 361 (531)
T COG3898 326 -------PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR 361 (531)
T ss_pred -------ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch
Confidence 123345566777778889999988888877766553
No 231
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.71 E-value=0.031 Score=59.15 Aligned_cols=134 Identities=16% Similarity=0.083 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 210 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p 210 (1124)
.-+.+|..+...|++.+|...|++++.- . -..-...+..|+...+..+++..|...+++..+.-. ....|
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG------~-fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p---a~r~p 160 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSG------I-FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP---AFRSP 160 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcc------c-cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC---ccCCC
Confidence 3566788889999999999999999853 1 123345788899999999999999999888766421 11222
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 211 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
.....+|.+|..+|++.+|...|+.++..+ |. .......+.++..+|+.++|..-|....+...
T Consensus 161 ---d~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~ 224 (251)
T COG4700 161 ---DGHLLFARTLAAQGKYADAESAFEVAISYY--------PG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAK 224 (251)
T ss_pred ---CchHHHHHHHHhcCCchhHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 345668999999999999999999998753 11 23344568899999999999888877666543
No 232
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.59 E-value=0.54 Score=53.17 Aligned_cols=111 Identities=20% Similarity=0.201 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHh--cCCCC----chhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001206 126 SADGRQLLESSKTALDKG-KLEDAVTYGTKALAKLVAV--CGPYH----RMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 198 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qG-dyeeAl~~f~kAL~i~e~i--~G~d~----p~~A~ay~nLG~ly~~lGdydeAle~~~KAL 198 (1124)
...++.+|+.|...+.++ ++++|..++++|++++... ....+ .....++..|+.+|...+.++.... ..+++
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l 110 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNAL 110 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHH
Confidence 355899999999999999 9999999999999997551 11122 3457789999999999888764433 44455
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001206 199 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 241 (1124)
Q Consensus 199 eI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALe 241 (1124)
...+..++ +++.+.. ..|-.+.. .++.+++.+.+.+++.
T Consensus 111 ~~l~~e~~-~~~~~~~--L~l~il~~-~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 111 RLLESEYG-NKPEVFL--LKLEILLK-SFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHhCC-CCcHHHH--HHHHHHhc-cCChhHHHHHHHHHHH
Confidence 55544333 3333321 12222211 4555555555555443
No 233
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.57 E-value=0.048 Score=54.98 Aligned_cols=112 Identities=21% Similarity=0.142 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--------------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001206 215 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS--------------HPNTAATYINVAMMEEGLGNVHVALRYLHK 280 (1124)
Q Consensus 215 ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~d--------------hp~~a~al~nLA~iy~~lGdyeeAle~lek 280 (1124)
.+...|......++...++..+++++.++.--+-.+ ......++..++..+...|++++|+.++++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 344456666677888889999999988775322211 112245677788899999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 001206 281 ALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 334 (1124)
Q Consensus 281 ALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~d 334 (1124)
++.+. |..-.++..+-.+|..+|++.+|+.+|+++.+.+.+.+|..
T Consensus 88 ~l~~d--------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 88 ALALD--------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHHS--------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHhcC--------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 99874 44567888899999999999999999999999999888765
No 234
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.52 E-value=0.011 Score=69.78 Aligned_cols=131 Identities=17% Similarity=0.133 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHH
Q 001206 169 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD--TMKSYGDLAVFYYRLQHTELALKYVKRALY-LLHL 245 (1124)
Q Consensus 169 ~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~--~a~ay~nLA~iy~~lGdyeeAley~ekALe-i~ek 245 (1124)
....++...+..++..|+|.+|..++...- +.+...|...+. ....++|||.+++++|.|.-+..+|.+||. .+..
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 445678888999999999999988775432 222222222333 344568999999999999999999999996 3332
Q ss_pred hc-C-C-------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 001206 246 TC-G-P-------SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS 308 (1124)
Q Consensus 246 ~~-G-~-------dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~ 308 (1124)
+. | . .......+++|.|..|...|+.-.|.++|.++...+... ...|..||.++.
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n--------PrlWLRlAEcCi 380 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN--------PRLWLRLAECCI 380 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHH
Confidence 21 2 0 112346789999999999999999999999999988432 356777787765
No 235
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.52 E-value=0.063 Score=54.13 Aligned_cols=112 Identities=24% Similarity=0.227 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--------------CchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY--------------HRMTAGAYSLLAVVLYHTGDFNQATIYQQK 196 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d--------------~p~~A~ay~nLG~ly~~lGdydeAle~~~K 196 (1124)
.+...|......|+...++..+.+++.++..-+-.+ ......++..++..+...|++++|+.++++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 444556666778899999999999999875322111 112345667788889999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 197 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 250 (1124)
Q Consensus 197 ALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~d 250 (1124)
++.+ +|..-.++..|-.+|..+|++.+|+++|++....+.+.+|..
T Consensus 88 ~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 88 ALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 9987 466677889999999999999999999999999888766654
No 236
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.47 E-value=2.1 Score=51.27 Aligned_cols=188 Identities=13% Similarity=0.042 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH------
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI------ 200 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI------ 200 (1124)
.....++..++.-...|+..-|...|..|++.+.. +......+...|..-..+..++.|...|+-||+.
T Consensus 205 P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra 279 (677)
T KOG1915|consen 205 PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA 279 (677)
T ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH
Confidence 34556667777778889999999999999887532 3344455556666666666777776666655542
Q ss_pred ---------HHHhcCC---------------------CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 201 ---------NERELGL---------------------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 250 (1124)
Q Consensus 201 ---------~er~lg~---------------------D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~d 250 (1124)
+++.+|. ++|....++...-.+....|+.+.-.+.|++|+.-.--.....
T Consensus 280 eeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr 359 (677)
T KOG1915|consen 280 EELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHH
Confidence 2222222 2333445566666667777899999999999987311000000
Q ss_pred -ChhHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001206 251 -HPNTAATYINVAMM-EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 323 (1124)
Q Consensus 251 -hp~~a~al~nLA~i-y~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekA 323 (1124)
-...+..+.|.+.. -....+.+.+.+.|+.+|++. ...+...+.++...|.....+.+...|.+.+-.|
T Consensus 360 ~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 360 YWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 01123333444332 235688999999999999865 2233444555655566555555555555544443
No 237
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0099 Score=64.85 Aligned_cols=99 Identities=18% Similarity=0.168 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001206 174 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 253 (1124)
Q Consensus 174 y~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~ 253 (1124)
+..-|..|+.-..|..|+..|-+||.+ +|..+..|.|-|.||+.+.+++.+..-.++|+++ .+.
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N 76 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPN 76 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChH
Confidence 344566777788999999999999987 5777788999999999999999999999999986 567
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 254 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 254 ~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
.+...+.||.++.....|++|+..+++|+.+.+..
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999888654
No 238
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.2 Score=55.72 Aligned_cols=139 Identities=12% Similarity=0.116 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 171 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 250 (1124)
Q Consensus 171 A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~d 250 (1124)
..+.+.+..++.-.|+|.-.+..+.+.++. +.+........||.+.+..|+.+.|..||++.-+...++. +
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~--~ 247 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD--G 247 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh--c
Confidence 345677788888888998888888887763 2233344566788999999999999999998765544433 2
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 251 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 251 hp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
-........|.+.+|...++|..|...|.+++... +..+.+-.+-|.|+...|+...|++.++.++++
T Consensus 248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred cchhHHHHhhhhhheecccchHHHHHHHhhccccC--------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23345677888999999999999999998877642 345566778888889999999999988887765
No 239
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.25 E-value=0.083 Score=55.99 Aligned_cols=112 Identities=13% Similarity=0.054 Sum_probs=88.1
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
...+..++..+|..|...|++++|++.|.++.+.. ...-..+..+.++-.+....+++.....++.+|-.+...
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~- 105 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK- 105 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-
Confidence 34677899999999999999999999999977653 222346778888999999999999999999999998876
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 247 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 247 ~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
+.+..........-|..+...++|.+|.+.|-.++.-+
T Consensus 106 -~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 106 -GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred -cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 22333334445556777788899999999998776543
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.11 Score=59.11 Aligned_cols=167 Identities=14% Similarity=0.007 Sum_probs=122.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001206 134 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 213 (1124)
Q Consensus 134 ~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a 213 (1124)
..+.+.+-.|++.+|.....+.|+- +|.-..++..--.+++..|+...-...++|.+... ..+.|-..
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~s 175 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYS 175 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHH
Confidence 3445667788888888888887754 44444455555567777888888888888776643 34566666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 001206 214 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 293 (1124)
Q Consensus 214 ~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~ 293 (1124)
.....++..+...|-|++|++.-++|++| ++..+-+...++.++...|++.++.++..+.-...+. ..
T Consensus 176 Yv~GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~----s~ 243 (491)
T KOG2610|consen 176 YVHGMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ----SW 243 (491)
T ss_pred HHHHHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh----hh
Confidence 67777888999999999999999999986 3444666778899999999999999998877665532 12
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001206 294 IQTAASYHAIAIALSLMEAYPLSVQHEQTTL 324 (1124)
Q Consensus 294 p~~A~a~~nLA~ly~~lGd~eeAle~lekAL 324 (1124)
......|...|.+|...+.|+.|++.|.+-+
T Consensus 244 mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 244 MLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 2233446677888888899999999887543
No 241
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.21 E-value=0.24 Score=55.14 Aligned_cols=179 Identities=12% Similarity=0.059 Sum_probs=126.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 001206 141 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 220 (1124)
Q Consensus 141 ~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA 220 (1124)
...+.++|+.-|++++++- |.....-..++-.+-.+++.+++|.+-+++|++.|...+.....++.+ .+.+++-
T Consensus 39 ~e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~Il 112 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSIL 112 (440)
T ss_pred cccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHH
Confidence 3458899999999999873 334445567888899999999999999999999998876654444322 2233333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH----HH
Q 001206 221 VFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI----QT 296 (1124)
Q Consensus 221 ~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p----~~ 296 (1124)
..-....+.+.-.++|+..|+.++... +......+-..||.+|+..++|.+-.+.+++....++.-.|.++. +.
T Consensus 113 DyiStS~~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQL 190 (440)
T KOG1464|consen 113 DYISTSKNMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQL 190 (440)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchh
Confidence 333345566666777887777766532 344445566679999999999999988888888777666665543 34
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 297 AASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 297 A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
..+|..--.+|..+++-..-...|++++.+-
T Consensus 191 LEiYAlEIQmYT~qKnNKkLK~lYeqalhiK 221 (440)
T KOG1464|consen 191 LEIYALEIQMYTEQKNNKKLKALYEQALHIK 221 (440)
T ss_pred hhhHhhHhhhhhhhcccHHHHHHHHHHHHhh
Confidence 4555555567777777777777888888764
No 242
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.20 E-value=0.2 Score=55.75 Aligned_cols=207 Identities=10% Similarity=0.023 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 209 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~ 209 (1124)
.++-++-.+++.+|+|++-...|.+.|...+.....++.. .+.+.+-..-....+.+.-.++|+..|+.++...+ .
T Consensus 66 KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKN--e 141 (440)
T KOG1464|consen 66 KALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILDYISTSKNMDLLQEFYETTLDALKDAKN--E 141 (440)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhc--c
Confidence 4667778889999999999999999998766543333221 12222221112233445555667766666655322 2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 210 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP----NTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp----~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
......-..||.+|+..++|.+-.+.+++.-.-++...|.++. ....+|..--.+|..+.+-.+-..+|++||.+.
T Consensus 142 RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK 221 (440)
T KOG1464|consen 142 RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIK 221 (440)
T ss_pred eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh
Confidence 2244556679999999999998888888877777665565533 345566556678889999888889999999987
Q ss_pred HHhcCCCcHHHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 001206 286 QRLLGPDHIQTA-ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 346 (1124)
Q Consensus 286 ~k~lG~d~p~~A-~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La 346 (1124)
..+ .||... .+...=|.++...|+|++|..-|=+|++-+.+. ..++...++.+|.
T Consensus 222 SAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs---GspRRttCLKYLV 277 (440)
T KOG1464|consen 222 SAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES---GSPRRTTCLKYLV 277 (440)
T ss_pred ccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc---CCcchhHHHHHHH
Confidence 544 455443 344445677888899999988877777655432 3455555655553
No 243
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.36 Score=53.92 Aligned_cols=171 Identities=16% Similarity=0.163 Sum_probs=109.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001206 132 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 211 (1124)
Q Consensus 132 Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~ 211 (1124)
+...|.+|+..|++++|++.......+ .+...--.++.++.+++-|...+++..++.+.
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided-------- 169 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED-------- 169 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--------
Confidence 444577889999999999988763322 23333345677778889998888888877432
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 212 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 291 (1124)
Q Consensus 212 ~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~ 291 (1124)
.++..||..+...- .+-+-++.|+.++++..++ .+.+..+++.+|.++..+|+|++|...++.||.-.
T Consensus 170 --~tLtQLA~awv~la---~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd------ 237 (299)
T KOG3081|consen 170 --ATLTQLAQAWVKLA---TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD------ 237 (299)
T ss_pred --HHHHHHHHHHHHHh---ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc------
Confidence 13344444443321 0111144445555554432 34456788999999999999999999999999754
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 001206 292 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA 341 (1124)
Q Consensus 292 d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a 341 (1124)
.....++.|+-.+-...|.-.++..-+-.-+. ...+.|+.+...
T Consensus 238 --~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk----~~~p~h~~vk~~ 281 (299)
T KOG3081|consen 238 --AKDPETLANLIVLALHLGKDAEVTERNLSQLK----LSHPEHPFVKHL 281 (299)
T ss_pred --CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH----hcCCcchHHHHH
Confidence 22356677777777888888777665432222 234666655443
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.17 E-value=0.087 Score=62.97 Aligned_cols=127 Identities=19% Similarity=0.146 Sum_probs=96.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC--------
Q 001206 180 VLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH-------- 251 (1124)
Q Consensus 180 ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dh-------- 251 (1124)
-.++..+...-+++.++||++. ++-+.+|..||.- ...-..+|+++|++|++..+..++.+.
T Consensus 177 ~AWRERnp~aRIkaA~eALei~--------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEIN--------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHF 246 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccch
Confidence 3445678888899999999984 5567777777642 234478999999999998776665431
Q ss_pred ---------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001206 252 ---------PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 322 (1124)
Q Consensus 252 ---------p~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lek 322 (1124)
.-...+...||++..++|+.++|++.+++.++.. .......++.+|..++..++.|.++...+.+
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------CccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0124556789999999999999999999988654 1123567889999999999999999887665
No 245
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.025 Score=64.33 Aligned_cols=105 Identities=20% Similarity=0.213 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
.+|..+-+-|.-|+...+|..|+..|.++|..-. .+....+.+|.|.|.+.+.+|+|..|+.-+.+|+.+
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc----~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------ 148 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKC----ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------ 148 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC----CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 4688899999999999999999999999987632 334456788999999999999999999999999887
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 243 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ 243 (1124)
.|....+|+.=|.|++.+.++++|..+++..+.+.
T Consensus 149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 46668899999999999999999999999987764
No 246
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.05 E-value=0.075 Score=50.27 Aligned_cols=82 Identities=20% Similarity=0.154 Sum_probs=62.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001206 223 YYRLQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 301 (1124)
Q Consensus 223 y~~lGdyeeAley~ekALei~ek~~G~d-hp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~ 301 (1124)
..+.|+|.+|++.+.+.++......... ......++.++|.++...|++++|+..+++|+++.++. .|......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 4578999999999999999876644322 12456678899999999999999999999999999887 44444444544
Q ss_pred HHHHH
Q 001206 302 AIAIA 306 (1124)
Q Consensus 302 nLA~l 306 (1124)
.++.+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 44443
No 247
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.12 Score=56.70 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC---C-------chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY---H-------RMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 199 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d---~-------p~~A~ay~nLG~ly~~lGdydeAle~~~KALe 199 (1124)
-.+.+.|.-++..|+|.+|...|+.|+..++.+.-.. . ......+.|++.|+...|+|-++++.....|.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4678889999999999999999999999877653221 2 23345788999999999999999999888776
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 200 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 200 I~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
. ++....+|+.-|.++...=+.++|.+-|.++|++
T Consensus 259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 259 H--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred c--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 5 6778999999999999999999999999999985
No 248
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.99 E-value=0.3 Score=52.29 Aligned_cols=99 Identities=14% Similarity=-0.020 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 001206 214 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 293 (1124)
Q Consensus 214 ~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~ 293 (1124)
.+...+|..+...+++++|+..++.++..- .|......+-.+||.+...+|++++|+..+...- ++
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~~ 155 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIK---------EE 155 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------cc
Confidence 345678889999999999999999998632 2333445667889999999999999988876532 23
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 294 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 294 p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
...+......|.++..+|+-++|...|+++++.
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 334555667899999999999999999999986
No 249
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.96 E-value=1.6 Score=48.66 Aligned_cols=186 Identities=13% Similarity=0.063 Sum_probs=115.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC---C-------chhHHHHHHHHHHHHhcC--------------CH
Q 001206 132 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY---H-------RMTAGAYSLLAVVLYHTG--------------DF 187 (1124)
Q Consensus 132 Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d---~-------p~~A~ay~nLG~ly~~lG--------------dy 187 (1124)
.+.+.++++..|+..+|+..|++=+..+....+.. . ...++-|..+|.+..... -|
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy 92 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYY 92 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHH
Confidence 34556788999999999999999998888776551 1 122333455666554432 12
Q ss_pred HHHHHHHHHHHHHHHHhcC-CC-------------------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 188 NQATIYQQKALDINERELG-LD-------------------HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 247 (1124)
Q Consensus 188 deAle~~~KALeI~er~lg-~D-------------------~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~ 247 (1124)
..|-.+...--..++.... ++ .+.....+..+.............++++.+|++.+....
T Consensus 93 ~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~~ 172 (247)
T PF11817_consen 93 QIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKYG 172 (247)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHhc
Confidence 3333333222223333210 00 000111111111111222344677889999999887643
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 001206 248 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 321 (1124)
Q Consensus 248 G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~le 321 (1124)
.......+...+|.-|...|+|++|+.+|+.+...+++- ........++..|..++..+|+.+..+.+.-
T Consensus 173 --~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 173 --QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred --cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 245556677899999999999999999999997776542 3344566778889999999999888776543
No 250
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.85 E-value=0.13 Score=63.67 Aligned_cols=149 Identities=18% Similarity=0.144 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 001206 145 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-----GDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 219 (1124)
Q Consensus 145 yeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~l-----GdydeAle~~~KALeI~er~lg~D~p~~a~ay~nL 219 (1124)
...|..+|+.+... ....+...+|.+|..- .|.+.|+.+|+.+..-+.+.. +.....+++.|
T Consensus 228 ~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~l 294 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYGL 294 (552)
T ss_pred hhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccHH
Confidence 45677777776554 3455777888888764 689999999999987322210 01123467889
Q ss_pred HHHHHHcC-----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHhcCC
Q 001206 220 AVFYYRLQ-----HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG---NVHVALRYLHKALKCNQRLLGP 291 (1124)
Q Consensus 220 A~iy~~lG-----dyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lG---dyeeAle~lekALei~~k~lG~ 291 (1124)
|.+|.... +++.|+.+|.+|-+. .+ ..+.+.||.+|.... ++.+|.++|..|...-
T Consensus 295 g~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~---~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G------ 358 (552)
T KOG1550|consen 295 GRLYLQGLGVEKIDYEKALKLYTKAAEL-------GN---PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG------ 358 (552)
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHhc-------CC---chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC------
Confidence 99998853 678899999988764 23 356678899888766 5778999998886532
Q ss_pred CcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 001206 292 DHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 292 d~p~~A~a~~nLA~ly~~----lGd~eeAle~lekALei 326 (1124)
| ..+++.+|.+|.. .-+...|..+++++-+.
T Consensus 359 -~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 359 -H---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred -C---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 2 3566778888764 34778899999988764
No 251
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.84 E-value=0.53 Score=55.43 Aligned_cols=152 Identities=16% Similarity=0.060 Sum_probs=107.9
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---------------------CChhHHHHHHHHHHHHH
Q 001206 166 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL---------------------DHPDTMKSYGDLAVFYY 224 (1124)
Q Consensus 166 d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~---------------------D~p~~a~ay~nLA~iy~ 224 (1124)
.+|....++..++.++..+|++..|.+++++||-.+++.+.. .+.....+++.....+.
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 378889999999999999999999999999999988854211 13344566677777888
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 001206 225 RLQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 303 (1124)
Q Consensus 225 ~lGdyeeAley~ekALei~ek~~G~d-hp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nL 303 (1124)
+.|-+..|+++.+-.+.+ .+. +| ..+++.+-....+.++|+--+++++.......+. .........+.+
T Consensus 115 ~RG~~rTAlE~~KlLlsL-----dp~~DP--~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~ 184 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSL-----DPDEDP--LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSI 184 (360)
T ss_pred hcCcHHHHHHHHHHHHhc-----CCCCCc--chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHH
Confidence 999999999988877764 222 33 4455556666677788887777777655421100 000112345667
Q ss_pred HHHHHHcCCh---------------HHHHHHHHHHHHHH
Q 001206 304 AIALSLMEAY---------------PLSVQHEQTTLQIL 327 (1124)
Q Consensus 304 A~ly~~lGd~---------------eeAle~lekALei~ 327 (1124)
|.++..+++- +.|...+++|+..+
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 7778878877 89999999998875
No 252
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.81 E-value=0.7 Score=52.01 Aligned_cols=144 Identities=19% Similarity=0.118 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Q 001206 130 RQLLESSKTALD----KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDIN 201 (1124)
Q Consensus 130 r~Ll~lG~~yl~----qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~----lGdydeAle~~~KALeI~ 201 (1124)
...+.++..|.. ..+..+|+.+|+.+.. .....+.++||.+|.. ..|+.+|..+|++|...
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~- 142 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL- 142 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-
Confidence 455566666653 3457888888885443 2445678889999987 45999999999999875
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCC
Q 001206 202 ERELGLDHPDTMKSYGDLAVFYYRLQ-------HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGN 270 (1124)
Q Consensus 202 er~lg~D~p~~a~ay~nLA~iy~~lG-------dyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~----lGd 270 (1124)
| ++.-..+.++||.+|..-. +...|+.+|.++-... ...+..+||.+|.. ..+
T Consensus 143 ----g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----------~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 143 ----G--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----------NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred ----C--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----------CHHHHHHHHHHHHcCCCCCcC
Confidence 2 2211445778888887642 2236777777776542 35677889988865 348
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 001206 271 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 311 (1124)
Q Consensus 271 yeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lG 311 (1124)
+.+|..+|++|-+.- + ....+.++ ++...|
T Consensus 207 ~~~A~~wy~~Aa~~g-------~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 207 LKKAFRWYKKAAEQG-------D---GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHHCC-------C---HHHHHHHH-HHHhcC
Confidence 999999999987642 2 45666777 555555
No 253
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.78 E-value=0.12 Score=48.80 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=62.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 001206 181 LYHTGDFNQATIYQQKALDINERELGLD-HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 259 (1124)
Q Consensus 181 y~~lGdydeAle~~~KALeI~er~lg~D-~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~ 259 (1124)
....|+|.+|++.+.+..+......... ......++.++|.++...|++++|+..+++|+.+.++.. |......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHH
Confidence 4568999999999999999876643322 124566788999999999999999999999999998854 4444444554
Q ss_pred HHHHH
Q 001206 260 NVAMM 264 (1124)
Q Consensus 260 nLA~i 264 (1124)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 44443
No 254
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.60 E-value=0.44 Score=51.08 Aligned_cols=103 Identities=17% Similarity=0.037 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 169 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 248 (1124)
Q Consensus 169 ~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G 248 (1124)
+-..+...+|..+...+++++|+..++.++... .|......+-.+||.+...+|++++|+..+...-
T Consensus 87 Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-------- 153 (207)
T COG2976 87 YAVLAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIK-------- 153 (207)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--------
Confidence 334456678899999999999999999998652 2333345567789999999999999998776532
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 249 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 249 ~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
++..........|.++...|+-++|+..|++|+...
T Consensus 154 -~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 154 -EESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred -cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 233344555667999999999999999999999874
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.58 E-value=0.48 Score=54.23 Aligned_cols=148 Identities=16% Similarity=0.131 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhcC--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 001206 151 YGTKALAKLVAVCG--PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 228 (1124)
Q Consensus 151 ~f~kAL~i~e~i~G--~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGd 228 (1124)
..+..+.+...++. ......+.++..++.+....|.++.|..++.++...... .......+...-+.+++..|+
T Consensus 124 ~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~----~~~~~~~v~~e~akllw~~g~ 199 (352)
T PF02259_consen 124 VWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS----SESLLPRVFLEYAKLLWAQGE 199 (352)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc----ccCCCcchHHHHHHHHHHcCC
Confidence 34444444433332 123467788999999999999999999999887764211 111134566777999999999
Q ss_pred HHHHHHHHHHHHH-HHHHh-------------------------cCCCChhHHHHHHHHHHHHHHC------CCHHHHHH
Q 001206 229 TELALKYVKRALY-LLHLT-------------------------CGPSHPNTAATYINVAMMEEGL------GNVHVALR 276 (1124)
Q Consensus 229 yeeAley~ekALe-i~ek~-------------------------~G~dhp~~a~al~nLA~iy~~l------GdyeeAle 276 (1124)
..+|+..++..+. ..... ........+.++..+|...... +.+++++.
T Consensus 200 ~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~ 279 (352)
T PF02259_consen 200 QEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILK 279 (352)
T ss_pred HHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHH
Confidence 9999999998888 33322 0111234577888888888888 88999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc
Q 001206 277 YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM 310 (1124)
Q Consensus 277 ~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~l 310 (1124)
.|++|..+. +....+++.+|..+..+
T Consensus 280 ~~~~a~~~~--------~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 280 YYKEATKLD--------PSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHhC--------hhHHHHHHHHHHHHHHH
Confidence 999998875 33455777777766543
No 256
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.58 E-value=0.092 Score=55.54 Aligned_cols=92 Identities=21% Similarity=0.219 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001206 145 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF---NQATIYQQKALDINERELGLDHPDTMKSYGDLAV 221 (1124)
Q Consensus 145 yeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdy---deAle~~~KALeI~er~lg~D~p~~a~ay~nLA~ 221 (1124)
|+.|.+.++..... +|..+..+++-|.++..+.++ .++..+++.|+.-+++.+.. +|+...++++||.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHH
Confidence 34455555544433 566678888888888777555 44666666666665554322 4677889999999
Q ss_pred HHHHcCC----HHHHHHHHHHHHHHHHH
Q 001206 222 FYYRLQH----TELALKYVKRALYLLHL 245 (1124)
Q Consensus 222 iy~~lGd----yeeAley~ekALei~ek 245 (1124)
+|..++. ..+|..+|++|...+++
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~Fqk 105 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQK 105 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 9987764 35677777777766554
No 257
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.53 E-value=0.027 Score=43.73 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 215 SYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 215 ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
+|.+||.+|..+|+|++|+++|+++|.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999987654
No 258
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.53 E-value=0.028 Score=43.65 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 257 TYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 257 al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
++.+||.+|..+|+|++|+++|+++|.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999987644
No 259
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.15 Score=58.25 Aligned_cols=134 Identities=13% Similarity=0.010 Sum_probs=102.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001206 133 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 212 (1124)
Q Consensus 133 l~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~ 212 (1124)
...-..++..|+...-...+++.+... ..+-|-.......++..+...|-|++|.+..+++++| ++..
T Consensus 141 kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D 208 (491)
T KOG2610|consen 141 KFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI--------NRFD 208 (491)
T ss_pred hhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC--------CCcc
Confidence 333456777888888887777766442 2345555666777889999999999999999999998 3445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001206 213 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 282 (1124)
Q Consensus 213 a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekAL 282 (1124)
+.+...++.++...|++.++.++..+.-..++. .......-|...|.++..-+.|+.|++.|.+-+
T Consensus 209 ~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~----s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 209 CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ----SWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hHHHHHHHHHHHhcchhhhHHHHHHhcccchhh----hhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 778888999999999999999999887766642 122334456678899999999999999998754
No 260
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.33 E-value=5.9 Score=46.67 Aligned_cols=228 Identities=14% Similarity=0.075 Sum_probs=135.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH--
Q 001206 139 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY-- 216 (1124)
Q Consensus 139 yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay-- 216 (1124)
....|+.+.|+.|...+.... +....+...+=...+..|+++.|+.+.+...... +.+.+-.+...+.
T Consensus 164 Aqr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR~rAvLL 233 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK--VIEKDVAERSRAVLL 233 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhchhhHHHHHHHHH
Confidence 346799999999999887763 3444455544455678899999999988766542 2233322222222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 001206 217 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 296 (1124)
Q Consensus 217 ~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~ 296 (1124)
..-+.... .-+...|...-.+++++ .|+..-.-..-+..|+..|+..++-.+++.+-+. ..||++
T Consensus 234 tAkA~s~l-dadp~~Ar~~A~~a~KL--------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~i 298 (531)
T COG3898 234 TAKAMSLL-DADPASARDDALEANKL--------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA------EPHPDI 298 (531)
T ss_pred HHHHHHHh-cCChHHHHHHHHHHhhc--------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHH
Confidence 22222222 23567777777777765 3444445556688999999999999998887664 467765
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCC
Q 001206 297 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHL 376 (1124)
Q Consensus 297 A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~ 376 (1124)
+. +|....--+.++.-++++-.+. .+.+++.....+...-++ ..+.+..+.+.........
T Consensus 299 a~-------lY~~ar~gdta~dRlkRa~~L~--slk~nnaes~~~va~aAl-da~e~~~ARa~Aeaa~r~~--------- 359 (531)
T COG3898 299 AL-------LYVRARSGDTALDRLKRAKKLE--SLKPNNAESSLAVAEAAL-DAGEFSAARAKAEAAAREA--------- 359 (531)
T ss_pred HH-------HHHHhcCCCcHHHHHHHHHHHH--hcCccchHHHHHHHHHHH-hccchHHHHHHHHHHhhhC---------
Confidence 44 4444444455677777766552 233444433222222111 1222222222111111111
Q ss_pred cHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHh
Q 001206 377 SVSDLLDYINPSHDTK-GRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 377 ~vaell~~Lg~~y~~q-GdyeeAl~~yekALkL~~ 410 (1124)
....+|..|+.+.... |+-.++..++-++++-=+
T Consensus 360 pres~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 360 PRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred chhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 2235677888888665 999999999999987543
No 261
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=95.32 E-value=0.95 Score=61.23 Aligned_cols=158 Identities=20% Similarity=0.080 Sum_probs=114.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcC----C---------------
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG----D--------------- 186 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lG----d--------------- 186 (1124)
...||....+|..|+..|++.+|+..|.+|+.+++.. .|+...+.++-.++.+...++ +
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~ 316 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISS 316 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCC
Confidence 4568889999999999999999999999999998875 677788888877765543221 1
Q ss_pred -------------------------------------HHHHHHHHHHHHHHHHHhcC---CCChh--HHHHHHHHHHHHH
Q 001206 187 -------------------------------------FNQATIYQQKALDINERELG---LDHPD--TMKSYGDLAVFYY 224 (1124)
Q Consensus 187 -------------------------------------ydeAle~~~KALeI~er~lg---~D~p~--~a~ay~nLA~iy~ 224 (1124)
...-.+.+++++.++.+... .-.|. ...+...++.++.
T Consensus 317 ~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~ 396 (1185)
T PF08626_consen 317 STSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLV 396 (1185)
T ss_pred ccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHH
Confidence 11112356666666665431 11222 3455666677776
Q ss_pred HcC--------------------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001206 225 RLQ--------------------HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 225 ~lG--------------------dyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei 284 (1124)
... .-.++..++.+++.+..... ...+.+.+|..+|.+|..+|-..++.-+++.++..
T Consensus 397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 666 67888889999988754323 45677899999999999999999999998888877
Q ss_pred HHH
Q 001206 285 NQR 287 (1124)
Q Consensus 285 ~~k 287 (1124)
+..
T Consensus 475 ~~~ 477 (1185)
T PF08626_consen 475 LVP 477 (1185)
T ss_pred hcc
Confidence 643
No 262
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.30 E-value=0.034 Score=41.95 Aligned_cols=30 Identities=40% Similarity=0.584 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 213 MKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 213 a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
+.+|+++|.+|..+|++++|+.+|++|+++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357999999999999999999999999987
No 263
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.12 E-value=0.042 Score=41.49 Aligned_cols=30 Identities=37% Similarity=0.613 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001206 171 AGAYSLLAVVLYHTGDFNQATIYQQKALDI 200 (1124)
Q Consensus 171 A~ay~nLG~ly~~lGdydeAle~~~KALeI 200 (1124)
+.+|+++|.+|..+|++++|+.+|++|+++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 468999999999999999999999999997
No 264
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.09 E-value=0.63 Score=52.36 Aligned_cols=152 Identities=15% Similarity=0.041 Sum_probs=105.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001206 138 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHPDTM 213 (1124)
Q Consensus 138 ~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~l----GdydeAle~~~KALeI~er~lg~D~p~~a 213 (1124)
.....+++..|...+.++-.. ........+|.+|..- .+..+|+.+|+++... ...
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~----------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----------g~~ 109 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAEL----------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----------GLA 109 (292)
T ss_pred cccccccHHHHHHHHHHhhhc----------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------ccH
Confidence 334567788888888777652 1125677788877653 4678888888854432 235
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHH
Q 001206 214 KSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-------NVHVALRYLHKAL 282 (1124)
Q Consensus 214 ~ay~nLA~iy~~----lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lG-------dyeeAle~lekAL 282 (1124)
.+.++||.+|.. ..++.+|..+|++|.+. .++.-..+.++||.+|..-. +...|+.+|.++.
T Consensus 110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa 182 (292)
T COG0790 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAA 182 (292)
T ss_pred HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHH
Confidence 678889999987 55899999999999874 23222455778888887642 2236777777766
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 001206 283 KCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 283 ei~~k~lG~d~p~~A~a~~nLA~ly~~----lGd~eeAle~lekALei 326 (1124)
... ...+...||.+|.. ..++.+|..+|+++-+.
T Consensus 183 ~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 183 ELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred Hhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 543 34667788888864 34889999999988763
No 265
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.25 Score=54.42 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC---Chh-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001206 171 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD---HPD-------TMKSYGDLAVFYYRLQHTELALKYVKRAL 240 (1124)
Q Consensus 171 A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D---~p~-------~a~ay~nLA~iy~~lGdyeeAley~ekAL 240 (1124)
..++..-|.-++.+|+|.+|...|+.|+...+.+.-.. .++ ..-.+.|.+.|+...|+|-++++.....|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999877653222 222 23457899999999999999999988887
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 241 YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 241 ei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.. ++....+|+.-|.+....=+.++|..-|+++|++-
T Consensus 258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 63 67888999999999999999999999999999863
No 266
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.21 Score=57.06 Aligned_cols=106 Identities=19% Similarity=0.141 Sum_probs=90.3
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 168 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 247 (1124)
Q Consensus 168 p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~ 247 (1124)
...+.-|-.-|.-|+...+|..|+..|.++|..- . .|.--.+..|.|-|.+.+.+|+|..|+.-+.+|+.+
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k--c--~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----- 148 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK--C--ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----- 148 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc--C--CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 3577888889999999999999999999998752 1 232335778999999999999999999999999985
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 248 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 248 G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.|....+++.=|.++..+.++++|..+++..+.+.
T Consensus 149 ---~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 ---KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ---CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 56668889999999999999999999999887765
No 267
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.76 E-value=0.25 Score=56.03 Aligned_cols=134 Identities=14% Similarity=0.103 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 173 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYLLHLTCGPSH 251 (1124)
Q Consensus 173 ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~-lGdyeeAley~ekALei~ek~~G~dh 251 (1124)
+|..+.....+.+..+.|...|.+|+.- ......+|...|.+.+. .++.+.|...|+++++.+. ..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CC
Confidence 4455555666666688888888888631 22345678888999777 4566669999999998642 22
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 252 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 252 p~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
...+......+...++.+.|..+|++++... ........+|......-...|+.+.....++++.+++
T Consensus 70 ---~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 70 ---PDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp ---HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3334444577789999999999999998753 1112134566667777778888888888887777664
No 268
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.56 E-value=3.8 Score=48.50 Aligned_cols=175 Identities=17% Similarity=0.122 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH---TGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~---lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+.++=..|....+|+.-+.+.+..-.+- ..+-.....+-..+|.++.+ .|+.++|+..+..++.-.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p----~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~------ 212 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALP----TCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD------ 212 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccC----ccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc------
Confidence 34444446777778887777665543330 01122334456677888887 899999999888875432
Q ss_pred CChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRL---------QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 278 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~l---------GdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~l 278 (1124)
......++..+|.+|-++ ..+++|+.+|+++.++- + ....-.|++.++...|.-.+...-+
T Consensus 213 -~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--------~-~~Y~GIN~AtLL~~~g~~~~~~~el 282 (374)
T PF13281_consen 213 -ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--------P-DYYSGINAATLLMLAGHDFETSEEL 282 (374)
T ss_pred -CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--------c-cccchHHHHHHHHHcCCcccchHHH
Confidence 223345677778777543 23567777777776642 1 1233467788888777744444333
Q ss_pred HHHH-HHHHHhcCC----CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 279 HKAL-KCNQRLLGP----DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 279 ekAL-ei~~k~lG~----d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
++.. .+. ..+|. ........+..++.+....|++++|.+++++++++
T Consensus 283 ~~i~~~l~-~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 283 RKIGVKLS-SLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHH-HHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3333 222 22221 11222344556777888899999999999998865
No 269
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.56 E-value=0.072 Score=39.83 Aligned_cols=31 Identities=32% Similarity=0.611 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001206 171 AGAYSLLAVVLYHTGDFNQATIYQQKALDIN 201 (1124)
Q Consensus 171 A~ay~nLG~ly~~lGdydeAle~~~KALeI~ 201 (1124)
+.+++.+|.+|+.+|++++|+.+|++++.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4679999999999999999999999999873
No 270
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.55 E-value=0.073 Score=39.80 Aligned_cols=29 Identities=34% Similarity=0.534 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 214 KSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 214 ~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
.+++.+|.+|+.+|++++|+++|++++.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999986
No 271
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.46 E-value=3.1 Score=49.99 Aligned_cols=182 Identities=14% Similarity=-0.010 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHH
Q 001206 215 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-------HVALRYLHKALKCNQR 287 (1124)
Q Consensus 215 ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdy-------eeAle~lekALei~~k 287 (1124)
.+..||.+++.+++|+.|..+|+.+..-+... ......+.++...|.++...+.. ++...+++.|+..+..
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 45679999999999999999999988866431 12334566677777777776643 4778889998888866
Q ss_pred hcC---CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHHHhHHHHHHHHh
Q 001206 288 LLG---PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR---TQDAAAWLEYFESKAFEQQEAARN 361 (1124)
Q Consensus 288 ~lG---~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~---t~~a~~~La~l~~k~~e~aeAl~~ 361 (1124)
... ........+....+.++..++.+.+|...+-+..... + ..+.. ....+..+++.. +. .
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~---l-~~~l~~~~~alllE~~a~~~--------~~-~ 354 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEI---L-ESDLRPFGSALLLEQAAYCY--------AS-L 354 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH---H-hhhhhhHhhHHHHHHHHHhh--------cc-c
Confidence 211 1122455677788889999999988887666555432 1 11111 111222222211 00 0
Q ss_pred ccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 362 GTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 362 ~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
....+... .......+--+..-|.-|.+.|....|+.+|.+|+.+.....
T Consensus 355 ~~~~~~~~--~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~~ 404 (414)
T PF12739_consen 355 RSNRPSPG--LTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGKG 404 (414)
T ss_pred ccCCCCcc--chhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCC
Confidence 00000000 000112233344457778999999999999999999998654
No 272
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=1.6 Score=49.75 Aligned_cols=212 Identities=13% Similarity=0.118 Sum_probs=118.9
Q ss_pred hccccccCcccccchHHHHHHHHHHHHHHHhhcccCCCCCCc------chHH-hHHhhhhhhhhhcCChHHHHHHHHHHH
Q 001206 65 YEWDLNGLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSP------FRKI-DVVSLVPVHKQAACSSADGRQLLESSK 137 (1124)
Q Consensus 65 f~y~L~~~~~~~l~k~~LLreL~~k~GIqL~~rdY~fd~a~~------f~~e-DI~~L~pv~K~~~~~s~~Ar~Ll~lG~ 137 (1124)
.+|.+...+.+.. ..+..++|++-...-|.|-.-.+ ...+ .+..++.. ... . .....+..+.
T Consensus 74 G~f~LakvN~D~~------p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~--~~~-~--~~e~~~~~~~ 142 (304)
T COG3118 74 GKFKLAKVNCDAE------PMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDK--VLP-A--EEEEALAEAK 142 (304)
T ss_pred CceEEEEecCCcc------hhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHH--hcC-h--HHHHHHHHhh
Confidence 4555555454422 45667788887666666543211 1122 23332211 111 1 2344566777
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 001206 138 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 217 (1124)
Q Consensus 138 ~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~ 217 (1124)
.....|++.+|...|..++.. .+....+...|+.+|...|+.+.|...+...=.- ..-.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-------~~~~~~~~l~ 207 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-------AQDKAAHGLQ 207 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--------CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-------chhhHHHHHH
Confidence 889999999999999999987 3455778899999999999999998776542110 0000111100
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 001206 218 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTA 297 (1124)
Q Consensus 218 nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A 297 (1124)
.--.++.+.....+...+-+++ . ..|+...+.+.||..|...|++++|++.+-..+... .|....
T Consensus 208 a~i~ll~qaa~~~~~~~l~~~~-a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d---~~~~d~--- 272 (304)
T COG3118 208 AQIELLEQAAATPEIQDLQRRL-A--------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD---RGFEDG--- 272 (304)
T ss_pred HHHHHHHHHhcCCCHHHHHHHH-H--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---ccccCc---
Confidence 0001122222222222221111 1 245556777889999999999999998887666543 222221
Q ss_pred HHHHHHHHHHHHcCChHHHH
Q 001206 298 ASYHAIAIALSLMEAYPLSV 317 (1124)
Q Consensus 298 ~a~~nLA~ly~~lGd~eeAl 317 (1124)
.....|-.++...|.-+.+.
T Consensus 273 ~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 273 EARKTLLELFEAFGPADPLV 292 (304)
T ss_pred HHHHHHHHHHHhcCCCCHHH
Confidence 23334455566666444443
No 273
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=1.3 Score=49.93 Aligned_cols=148 Identities=10% Similarity=-0.003 Sum_probs=95.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH----HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 176 LLAVVLYHTGDFNQATIYQQKALDI----NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 251 (1124)
Q Consensus 176 nLG~ly~~lGdydeAle~~~KALeI----~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dh 251 (1124)
.+|.-.....++++|+..|.+.+.- -++. ..+.-.+..+|+.+|...|++..--+......+.+.... .
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~----~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft---k 80 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKT----LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT---K 80 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh----hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc---c
Confidence 4555556677888888877776653 1111 112345678999999999999887777777777666543 3
Q ss_pred hhHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 001206 252 PNTAATYINVAMME-EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 330 (1124)
Q Consensus 252 p~~a~al~nLA~iy-~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~ 330 (1124)
+....+...|-..+ .....++.-+..+...++...+- .........-..+..+|++.|+|.+|+....-.+.-+++.
T Consensus 81 ~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE--kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~ 158 (421)
T COG5159 81 PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE--KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY 158 (421)
T ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 44444443333333 23455777777777777766432 1111222334567888999999999999999888877765
Q ss_pred cC
Q 001206 331 LG 332 (1124)
Q Consensus 331 lG 332 (1124)
-+
T Consensus 159 DD 160 (421)
T COG5159 159 DD 160 (421)
T ss_pred cC
Confidence 33
No 274
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.25 E-value=5.6 Score=50.92 Aligned_cols=119 Identities=21% Similarity=0.101 Sum_probs=82.3
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 001206 140 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 219 (1124)
Q Consensus 140 l~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nL 219 (1124)
+..++|.+|+....+.++. ||....+...-|.++.++|++++|..+++ ++... +.+ .-.++.-|
T Consensus 20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~----~~~---D~~tLq~l 83 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGL----KGT---DDLTLQFL 83 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccC----CCC---chHHHHHH
Confidence 4567788888877777755 67777777788889999999999995443 33321 222 23456678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 220 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 220 A~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
-.||.+++++++|..+|++++.. .|. -..++.+=++|.+.+.|.+-. +-|+++++
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQ---kaa~~LyK 138 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQ---KAALQLYK 138 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 89999999999999999999874 233 344555566677766665432 33455553
No 275
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=1.5 Score=51.94 Aligned_cols=190 Identities=14% Similarity=-0.008 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
.+.++..+.++....++..|..++++++-.+.. +....+...++..++.++..-+.--.+..+.-.++....+. .-|
T Consensus 273 vE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey-~ld 349 (482)
T KOG4322|consen 273 VENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY-SLD 349 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh-ccc
Confidence 345666777888888888888888776654332 23445667778888888887777777777777776665443 223
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT-----AATYINVAMMEEGLGNVHVALRYLHKALK 283 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~-----a~al~nLA~iy~~lGdyeeAle~lekALe 283 (1124)
. ..+..-.+||..+..+|..++|+..++.|+....-..|-+.... +.++...+..+ ...+++.+.+++++|-.
T Consensus 350 y-l~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~~A~~ 427 (482)
T KOG4322|consen 350 Y-LEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLDLAQS 427 (482)
T ss_pred h-hhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHHHHHH
Confidence 2 34556678899999999999999999999987765444332211 11111111222 45678888999999988
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHcCChHH---HHHHHHHHHH
Q 001206 284 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPL---SVQHEQTTLQ 325 (1124)
Q Consensus 284 i~~k~lG~d~p~~A~a~~nLA~ly~~lGd~ee---Ale~lekALe 325 (1124)
++.+. .-|.....+++.+|..|...|+.++ +...|++++.
T Consensus 428 ~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 428 IFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 88776 4566788889999999999998754 4445555544
No 276
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.13 E-value=0.17 Score=53.67 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=53.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC----CHHHHHHHHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRLQHT---ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG----NVHVALRYLHKA 281 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdy---eeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lG----dyeeAle~lekA 281 (1124)
+|..+..+++-|.++..+.++ .++.++++.|+.-+++.+. -+|....++++||.+|..++ +..+|..+|++|
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 455678888888888877665 4577777777766554332 25777889999999998765 455777777777
Q ss_pred HHHHHHh
Q 001206 282 LKCNQRL 288 (1124)
Q Consensus 282 Lei~~k~ 288 (1124)
..++++.
T Consensus 100 ~~~FqkA 106 (186)
T PF06552_consen 100 TEYFQKA 106 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776544
No 277
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.03 E-value=14 Score=46.20 Aligned_cols=32 Identities=13% Similarity=0.069 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001206 125 SSADGRQLLESSKTALDKGKLEDAVTYGTKAL 156 (1124)
Q Consensus 125 ~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL 156 (1124)
......+..++|..+..+..|++|.+||.+.-
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445667788888888889999999887653
No 278
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.98 E-value=0.73 Score=52.28 Aligned_cols=130 Identities=17% Similarity=0.145 Sum_probs=87.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001206 135 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDHPDTM 213 (1124)
Q Consensus 135 lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~-lGdydeAle~~~KALeI~er~lg~D~p~~a 213 (1124)
..+.....+..+.|..+|.+|+.. ......+|...|.+.+. .++...|...|+.++..+ ....+.
T Consensus 7 ~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~~~~- 72 (280)
T PF05843_consen 7 YMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSDPDF- 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-HHH-
T ss_pred HHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCCHHH-
Confidence 344455555689999999998631 23345678888999666 566777999999999875 223444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 214 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 214 ~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
+......+...++.+.|..+|++++..+ . .....-.++......-...|+++....+++++.+++
T Consensus 73 --~~~Y~~~l~~~~d~~~aR~lfer~i~~l----~-~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 73 --WLEYLDFLIKLNDINNARALFERAISSL----P-KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp --HHHHHHHHHHTT-HHHHHHHHHHHCCTS----S-CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHhCcHHHHHHHHHHHHHhc----C-chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3344467788999999999999998642 1 111123455666677777788888888888877765
No 279
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=9.7 Score=45.11 Aligned_cols=144 Identities=17% Similarity=0.119 Sum_probs=103.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001206 135 SSKTALDKGKLEDAVTYGTKALAKLVAVCGP--YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 212 (1124)
Q Consensus 135 lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~--d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~ 212 (1124)
....++.+.+|.+|..+-...+.-.... .. .+-..+.+|+.+..+|-..|+...-...+..-+... .++.|....
T Consensus 132 v~Lfl~d~K~~kea~~~~~~~l~~i~~~-nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~q 208 (493)
T KOG2581|consen 132 VLLFLIDQKEYKEADKISDALLASISIQ-NRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQ 208 (493)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhH
Confidence 3344556788999988877766542211 11 123456788889999999998777666666555543 455666667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 213 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 213 a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
+...+.|-..|...+.|+.|..+..++..-- ...+...+..++.+|.+..-+++|..|.+++..|+...
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe----~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPE----AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCcc----ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 7777888889999999999988776654210 11234678889999999999999999999999999875
No 280
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.94 E-value=0.047 Score=42.05 Aligned_cols=34 Identities=26% Similarity=0.515 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHH
Q 001206 193 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALK 234 (1124)
Q Consensus 193 ~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAle 234 (1124)
+|++||++ +|+...+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 36788887 57788999999999999999999963
No 281
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=1.8 Score=51.17 Aligned_cols=224 Identities=9% Similarity=0.004 Sum_probs=133.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001206 178 AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 257 (1124)
Q Consensus 178 G~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~a 257 (1124)
++....++...+|-.+.-+--.......|.|..+-....+..|.++....++..|...+.+++-.+.+ +.+......+
T Consensus 238 ~wml~d~~~v~~~~~~~~~~h~al~~~~g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sV 315 (482)
T KOG4322|consen 238 KWMLHDLLEVEENNLNTSYYHKALNSWFGGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSV 315 (482)
T ss_pred HHHHHHhHHHHHhhhhhhHHHHHHHHhhcchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHH
Confidence 33444444444443322222222223345666666777888999999999999999999998765543 3345567788
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHH
Q 001206 258 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 337 (1124)
Q Consensus 258 l~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~ 337 (1124)
+..++.++..-+.--.+..+.-.++..+.+. ......+..-..||..+..+|-.+.|+..++.|+.......|-++..
T Consensus 316 LL~~ae~~~~g~~a~l~lplaL~~~~~~sey--~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~dra 393 (482)
T KOG4322|consen 316 LLTIAEARESGDTACLNLPLALMFEFKRSEY--SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRA 393 (482)
T ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHHHHh--ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcc
Confidence 8889999998888888888888888877655 22233455566788888999999999999999998765443332211
Q ss_pred HHH---HHHHHHHH---HHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHH---HHHHHHHHHH
Q 001206 338 TQD---AAAWLEYF---ESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVS---TLKRKTYVAK 407 (1124)
Q Consensus 338 t~~---a~~~La~l---~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyee---Al~~yekALk 407 (1124)
... +...++.. .....+... .....+.+.-..-..|..+.+++++++..|...|+-.+ +...|+|+.+
T Consensus 394 ra~fvfanC~lA~a~s~~~e~ld~~~--~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 394 RAIFVFANCTLAFALSCANESLDGFP--RYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred eeEEEEEeeeecchhhhhhhhHHhhH--HHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 100 00000000 000000000 00000001111122344577889999999999998765 4455555444
No 282
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.85 E-value=0.12 Score=41.69 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001206 172 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 221 (1124)
Q Consensus 172 ~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~ 221 (1124)
.++..||.+|..+|++++|+..|+++++. +|+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46889999999999999999999999997 3445566666664
No 283
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.82 E-value=0.12 Score=38.79 Aligned_cols=31 Identities=39% Similarity=0.573 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001206 171 AGAYSLLAVVLYHTGDFNQATIYQQKALDIN 201 (1124)
Q Consensus 171 A~ay~nLG~ly~~lGdydeAle~~~KALeI~ 201 (1124)
+.+|..+|.+|..+|++++|+.+|++++++.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3579999999999999999999999999985
No 284
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.70 E-value=0.15 Score=41.11 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAV 179 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ 179 (1124)
..++.+|..|...|++++|+++|+++++. +|....++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 35778899999999999999999999987 5666778888775
No 285
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.70 E-value=0.15 Score=38.32 Aligned_cols=30 Identities=40% Similarity=0.613 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 256 ATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 256 ~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.+++.+|.+|..+|++++|+.+|++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999986
No 286
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.66 E-value=0.07 Score=61.12 Aligned_cols=98 Identities=23% Similarity=0.145 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
+......+...+..|.++.|++.|..++.+ .+..+..|...|.++..++....|+.-|..|+.+
T Consensus 114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei-------- 177 (377)
T KOG1308|consen 114 ANDKKVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI-------- 177 (377)
T ss_pred HHHHHHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------
Confidence 444455566778889999999999988876 6778888999999999999999999999998887
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
+++.+.-|-.-|.....+|+|.+|..+|+.+.++
T Consensus 178 n~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 178 NPDSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred CcccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 4667777888888888899999999999888775
No 287
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.58 E-value=5.6 Score=48.54 Aligned_cols=183 Identities=13% Similarity=0.027 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
+--++..++.+...|+.+.|+.+++.++....+ .....+++.+|+++..+.+|.+|..++....++..-.
T Consensus 267 a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS---- 336 (546)
T KOG3783|consen 267 ALWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWS---- 336 (546)
T ss_pred ccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhh----
Confidence 444566677777788899999999988873221 2345678889999988888988888877665542110
Q ss_pred ChhHHHHHHHHH-HHH--------HHcCCHHHHHHHHHHHHHHHHH----------------------------------
Q 001206 209 HPDTMKSYGDLA-VFY--------YRLQHTELALKYVKRALYLLHL---------------------------------- 245 (1124)
Q Consensus 209 ~p~~a~ay~nLA-~iy--------~~lGdyeeAley~ekALei~ek---------------------------------- 245 (1124)
. -.|..++ .|| ...|+-++|-.+++.+.++...
T Consensus 337 ---~-a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~ 412 (546)
T KOG3783|consen 337 ---H-AFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPY 412 (546)
T ss_pred ---H-HHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchH
Confidence 0 0111111 111 1112222222222222111110
Q ss_pred --------------------------hcC-CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 001206 246 --------------------------TCG-PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 298 (1124)
Q Consensus 246 --------------------------~~G-~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~ 298 (1124)
... .+..+..--+.-+|.++..+|+-..|..+|+.+++-. .....++.....
T Consensus 413 ~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e-~~~~~d~w~~Pf 491 (546)
T KOG3783|consen 413 YELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKE-SKRTEDLWAVPF 491 (546)
T ss_pred HHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhccccccccH
Confidence 000 0122233445678999999999999999999998663 222345566678
Q ss_pred HHHHHHHHHHHcCC-hHHHHHHHHHHHHH
Q 001206 299 SYHAIAIALSLMEA-YPLSVQHEQTTLQI 326 (1124)
Q Consensus 299 a~~nLA~ly~~lGd-~eeAle~lekALei 326 (1124)
+++.||.+|.+++. ..+|..++.+|-..
T Consensus 492 A~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 492 ALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 99999999999999 99999999988765
No 288
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.53 E-value=1.9 Score=53.68 Aligned_cols=132 Identities=20% Similarity=0.148 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHH
Q 001206 130 RQLLESSKTALD-----KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-----DFNQATIYQQKALD 199 (1124)
Q Consensus 130 r~Ll~lG~~yl~-----qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lG-----dydeAle~~~KALe 199 (1124)
...+.+|.+|+. ..+.+.|+.+|+.+...+.+.. +.....+++.||.+|.... ++..|+.+|.+|-.
T Consensus 245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 344455555543 4689999999999987322110 1113347889999998853 67889999988876
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC----CCHH
Q 001206 200 INERELGLDHPDTMKSYGDLAVFYYRLQ---HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL----GNVH 272 (1124)
Q Consensus 200 I~er~lg~D~p~~a~ay~nLA~iy~~lG---dyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~l----Gdye 272 (1124)
. | ...+.+.||.+|..-. ++..|.+||..|... .| ..+++++|.||..- -+..
T Consensus 322 ~-----g-----~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-------G~---~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 322 L-----G-----NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-------GH---ILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred c-----C-----CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-------CC---hHHHHHHHHHHHhCCCcCCCHH
Confidence 4 1 2456788999888765 567899999988763 12 46677888888753 4788
Q ss_pred HHHHHHHHHHHH
Q 001206 273 VALRYLHKALKC 284 (1124)
Q Consensus 273 eAle~lekALei 284 (1124)
.|..+|++|-+.
T Consensus 382 ~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 382 LAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHHHHHHc
Confidence 999999998765
No 289
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.49 E-value=4.4 Score=50.01 Aligned_cols=125 Identities=16% Similarity=0.112 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 175 SLLAVVLYHTGDFNQATIYQQK------ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 248 (1124)
Q Consensus 175 ~nLG~ly~~lGdydeAle~~~K------ALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G 248 (1124)
..+|.++..+|+|.+|..+|.+ |++++.. .-++.++.-|...|.-++-..+.++--+-....
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD----------lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~-- 703 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD----------LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI-- 703 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH----------HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc--
Confidence 3567788888999998888865 3444321 123455556666666555544444433322221
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHH------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001206 249 PSHPNTAATYINVAMMEEGLGNVHVALRY------LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 322 (1124)
Q Consensus 249 ~dhp~~a~al~nLA~iy~~lGdyeeAle~------lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lek 322 (1124)
..|.. -|.++...|+.++|+.. .+-++++.+++. ......+..++..+..+..+..|.+.|++
T Consensus 704 -kePka------AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 704 -KEPKA------AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred -CCcHH------HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 22322 36677778888888754 344555554431 11123344445555555555555544443
No 290
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.43 E-value=0.074 Score=40.97 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 001206 151 YGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT 191 (1124)
Q Consensus 151 ~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAl 191 (1124)
+|++|+++ +|....+|++||.+|...|++++|+
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 36778877 7888999999999999999999986
No 291
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.23 E-value=5.1 Score=49.58 Aligned_cols=105 Identities=13% Similarity=0.108 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 209 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~ 209 (1124)
..++..|...+...+|..|+++|...+..+-. ...+...+....+|+.||..+.+++.|.++++.|-+.-
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-------- 424 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-------- 424 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc--------
Confidence 46788888999999999999999999876532 12344568899999999999999999999999986652
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001206 210 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 244 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~e 244 (1124)
+........+-.+....+.-++|+.+......+..
T Consensus 425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 22233333344455667888999998888776543
No 292
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=93.20 E-value=4.9 Score=48.30 Aligned_cols=176 Identities=14% Similarity=-0.065 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHHH
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF-------NQATIYQQKALDINER 203 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdy-------deAle~~~KALeI~er 203 (1124)
.+..+|..++..++|+-|...|+.+..-+..- ......+.++-..|.++...+.. ++...+++.|+..+.+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 45667889999999999999999887765321 12234566677777777777643 3677788888888877
Q ss_pred hcC---CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh---HHHHHHHHHHHH--HHCCCHHHHH
Q 001206 204 ELG---LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN---TAATYINVAMME--EGLGNVHVAL 275 (1124)
Q Consensus 204 ~lg---~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~---~a~al~nLA~iy--~~lGdyeeAl 275 (1124)
... .......++....+.++...+.+.+|...+-++....-. .... .+.++..+|.+| ......
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l~~~~~alllE~~a~~~~~~~~~~~---- 359 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDLRPFGSALLLEQAAYCYASLRSNRP---- 359 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhhhhHhhHHHHHHHHHhhcccccCCC----
Confidence 311 122245667778888899999998888777766654210 1112 445555666666 111000
Q ss_pred HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 001206 276 RYLHKALKCNQRLLGPD-HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 328 (1124)
Q Consensus 276 e~lekALei~~k~lG~d-~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~ 328 (1124)
..+.. ....+.-+..-|.-|.+.|+...|+.+|.+|+.++.
T Consensus 360 ------------~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 360 ------------SPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred ------------CccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 00000 112233344456788899999999999999999876
No 293
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=93.16 E-value=0.078 Score=63.08 Aligned_cols=97 Identities=21% Similarity=0.182 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 209 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~ 209 (1124)
..+-..+..++..++|+.|+.+|.+|+++ ++..+..+.+.+..+...++|..|+.-+.+|+++ .
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------d 68 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------D 68 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------C
Confidence 34455677788889999999999999987 7888888999999999999999999999999986 4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 210 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
|....+|..-|.++..++++.+|+..|+....+
T Consensus 69 P~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 69 PTYIKAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred chhhheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 788899999999999999999999888887664
No 294
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=93.13 E-value=3 Score=50.69 Aligned_cols=180 Identities=18% Similarity=0.103 Sum_probs=103.6
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHH---HHHHHHHH
Q 001206 125 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIY---QQKALDIN 201 (1124)
Q Consensus 125 ~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~---~~KALeI~ 201 (1124)
+..-+..+...+.++...|+...|-.+-.++..+++..... .......+|+..-+++++..- +++...++
T Consensus 282 Wy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~-------l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~ 354 (656)
T KOG1914|consen 282 WYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG-------LLKENKLLYFALADYEESRYDDNKEKKVHEIY 354 (656)
T ss_pred HHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHHhcccchhhhhHHHH
Confidence 33444455566777777777766666666666655543211 112223334444444444433 44444444
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001206 202 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 281 (1124)
Q Consensus 202 er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekA 281 (1124)
.+.++..+.+...+|.++-..-.+..-.+.|...|.+|.+.-. +..|..++.++ .=|...++..-|...|+-.
T Consensus 355 ~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r---~~hhVfVa~A~----mEy~cskD~~~AfrIFeLG 427 (656)
T KOG1914|consen 355 NKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR---TRHHVFVAAAL----MEYYCSKDKETAFRIFELG 427 (656)
T ss_pred HHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC---CcchhhHHHHH----HHHHhcCChhHHHHHHHHH
Confidence 4443333334444555555566666667888888888876421 11122222222 2266788999999999988
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 282 LKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 282 Lei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
|..+ ++.+.....| ...+..+++-..|..+|++++..
T Consensus 428 Lkkf-----~d~p~yv~~Y---ldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 428 LKKF-----GDSPEYVLKY---LDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHhc-----CCChHHHHHH---HHHHHHhCcchhHHHHHHHHHhc
Confidence 8765 4556555544 45566788888899988888764
No 295
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=92.90 E-value=5.3 Score=54.31 Aligned_cols=231 Identities=14% Similarity=0.044 Sum_probs=136.1
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---C------------------
Q 001206 169 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL---Q------------------ 227 (1124)
Q Consensus 169 ~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~l---G------------------ 227 (1124)
..++..-.+|.+|...|++.+|+..|..|+.+++.. .|+-..+.++-.++.+..-+ |
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~ 317 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS 317 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence 345677789999999999999999999999998873 56666666665555433211 1
Q ss_pred ----------------------------------C-HHHHHHHHHHHHHHHHHhc---CCCChh--HHHHHHHHHHHHHH
Q 001206 228 ----------------------------------H-TELALKYVKRALYLLHLTC---GPSHPN--TAATYINVAMMEEG 267 (1124)
Q Consensus 228 ----------------------------------d-yeeAley~ekALei~ek~~---G~dhp~--~a~al~nLA~iy~~ 267 (1124)
. ...=.+.+++++.++.+.. ....|. .+.+...++.++..
T Consensus 318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~ 397 (1185)
T PF08626_consen 318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVA 397 (1185)
T ss_pred cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHH
Confidence 0 1111234445555444432 111232 35666777777777
Q ss_pred CC--------------------CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 268 LG--------------------NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 268 lG--------------------dyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
+. .-.++.+++.+++.+....+ ...+...+|..+|.+|..+|-..++.-+++.++..+
T Consensus 398 ~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 398 QHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred hhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 77 77889999999998765432 345667899999999999999999988888887766
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcC-CC-cHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001206 328 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKG-HL-SVSDLLDYINPSHDTKGRNVSTLKRKTYV 405 (1124)
Q Consensus 328 ~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~-~~-~vaell~~Lg~~y~~qGdyeeAl~~yekA 405 (1124)
-..+..-+......+..+...+.-... .... ..+....... -. -...++..+-.+..+.+|+..++++.-..
T Consensus 476 ~~~l~~~~~s~~~lL~~~~~~Ygi~~~-~~~~-----~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~L 549 (1185)
T PF08626_consen 476 VPGLIHWHQSYRSLLEELCKGYGISLD-PESS-----SEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLL 549 (1185)
T ss_pred ccccCCcchHHHHHHHHHhccCcccCC-cccc-----ccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 443311111111111111100000000 0000 0000000000 01 12355666667778999999998888666
Q ss_pred HHHH
Q 001206 406 AKVK 409 (1124)
Q Consensus 406 LkL~ 409 (1124)
|+-.
T Consensus 550 L~~~ 553 (1185)
T PF08626_consen 550 LRTY 553 (1185)
T ss_pred HHHH
Confidence 6644
No 296
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=6.9 Score=48.49 Aligned_cols=106 Identities=8% Similarity=-0.007 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 001206 214 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 293 (1124)
Q Consensus 214 ~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~ 293 (1124)
..+.|-|.-+++..+|..|+++|...+..+-. ...+...+....+|+.||..+.+.+.|.+++++|-+..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-------- 424 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-------- 424 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc--------
Confidence 45667788889999999999999999875422 11234457888999999999999999999999997764
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 001206 294 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 329 (1124)
Q Consensus 294 p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k 329 (1124)
+....+...+-.+....+.-++|+....+...++..
T Consensus 425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 222334444566666778888999988777666544
No 297
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=92.89 E-value=1.3 Score=47.09 Aligned_cols=158 Identities=14% Similarity=0.135 Sum_probs=97.9
Q ss_pred cCCHHHHHH-HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001206 142 KGKLEDAVT-YGTKALAKLVAVCGPYHRMTAGAYSLLAVVLY-----HTGDFNQATIYQQKALDINERELGLDHPDTMKS 215 (1124)
Q Consensus 142 qGdyeeAl~-~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~-----~lGdydeAle~~~KALeI~er~lg~D~p~~a~a 215 (1124)
.|+|-++++ -|++|..++...+.. .......+.+|.-+. ..+++..|++++..+... ....+
T Consensus 40 LgdYlEgi~knF~~A~kv~K~nCde--n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~a 107 (248)
T KOG4014|consen 40 LGDYLEGIQKNFQAAVKVFKKNCDE--NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQA 107 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc--cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHH
Confidence 345555543 566677776665433 233455556665443 245788899998888763 23556
Q ss_pred HHHHHHHHHHc-----CC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC--------------------
Q 001206 216 YGDLAVFYYRL-----QH--TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL-------------------- 268 (1124)
Q Consensus 216 y~nLA~iy~~l-----Gd--yeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~l-------------------- 268 (1124)
..++|.+++.- ++ ..+|++|+.+|-++ ....+.++|..+|..-
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~ 177 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAEL 177 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhh
Confidence 77888888753 23 67889999888653 1133444555554432
Q ss_pred ----CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHhc
Q 001206 269 ----GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM----EAYPLSVQHEQTTLQILRAKL 331 (1124)
Q Consensus 269 ----GdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~l----Gd~eeAle~lekALei~~k~l 331 (1124)
.+.++|.++-.+|-++ + ...+..++.++|..- .+.++|..+-.+|.++.+.+-
T Consensus 178 ~~~~kDMdka~qfa~kACel-------~---~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~ 238 (248)
T KOG4014|consen 178 GSLSKDMDKALQFAIKACEL-------D---IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELR 238 (248)
T ss_pred hhhhHhHHHHHHHHHHHHhc-------C---ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665544 2 235566777777642 467889999999988876653
No 298
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.78 E-value=13 Score=48.33 Aligned_cols=181 Identities=20% Similarity=0.180 Sum_probs=99.1
Q ss_pred HHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCC--------CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001206 136 SKTALDKGKLEDAVTYGTK------ALAKLVAVCGPY--------HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 201 (1124)
Q Consensus 136 G~~yl~qGdyeeAl~~f~k------AL~i~e~i~G~d--------~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~ 201 (1124)
|.+....+-|++|...|.+ |+..+....+.. .-.....|..||......|...+|++.|-||
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika---- 1130 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA---- 1130 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc----
Confidence 4455556666666665543 333322211110 1123457899999999999999999887665
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------------HHhcCCCChhH----
Q 001206 202 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL-----------------------HLTCGPSHPNT---- 254 (1124)
Q Consensus 202 er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~-----------------------ek~~G~dhp~~---- 254 (1124)
|+| ..|...-.+..+.|.|++-++|+.-|..-. +-+.|+++...
T Consensus 1131 ------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vG 1201 (1666)
T KOG0985|consen 1131 ------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVG 1201 (1666)
T ss_pred ------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHh
Confidence 222 234455555556666666666665554411 12233332221
Q ss_pred ------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHH---------------hcCCCcHHHHHH
Q 001206 255 ------------------AATYINVAMMEEGLGNVHVALRYLHKALKC--NQR---------------LLGPDHIQTAAS 299 (1124)
Q Consensus 255 ------------------a~al~nLA~iy~~lGdyeeAle~lekALei--~~k---------------~lG~d~p~~A~a 299 (1124)
..-+..||..+..+|+|+-|.+..++|-.. +++ +.|-+-...+.-
T Consensus 1202 drcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhade 1281 (1666)
T KOG0985|consen 1202 DRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADE 1281 (1666)
T ss_pred HHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHh
Confidence 112334666677777777777776665432 111 112111112333
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 001206 300 YHAIAIALSLMEAYPLSVQHEQTTLQILRA 329 (1124)
Q Consensus 300 ~~nLA~ly~~lGd~eeAle~lekALei~~k 329 (1124)
+-.|-..|...|-|++-+.+++.++-+-+.
T Consensus 1282 Leeli~~Yq~rGyFeElIsl~Ea~LGLERA 1311 (1666)
T KOG0985|consen 1282 LEELIEYYQDRGYFEELISLLEAGLGLERA 1311 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhhhchhHH
Confidence 556667778888888777777766654433
No 299
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.55 E-value=3 Score=49.50 Aligned_cols=117 Identities=16% Similarity=0.035 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh----c-CCCChhHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHH
Q 001206 170 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE----L-GLDHPDTMKSYGDLAVFYYRLQHT---ELALKYVKRALY 241 (1124)
Q Consensus 170 ~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~----l-g~D~p~~a~ay~nLA~iy~~lGdy---eeAley~ekALe 241 (1124)
.+..|+..|.+..+...|.+|+..+-.|=+.+-.. + +.|+ .+..-..+-+||+.+.+. ..|..-+.+|-.
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDN--yallnLDIVWCYfrLknitcL~DAe~RL~ra~k 239 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDN--YALLNLDIVWCYFRLKNITCLPDAEVRLVRARK 239 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcc--hhhhhcchhheehhhcccccCChHHHHHHHHHH
Confidence 34556677788888889999988877765554322 1 1122 233445677888888764 566666666666
Q ss_pred HHHHhcCCC-----------ChhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 242 LLHLTCGPS-----------HPNT---AATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 242 i~ek~~G~d-----------hp~~---a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
-+...+|.+ .|.. ...+...|.+.+.+|+-++|.++|+.|.....++
T Consensus 240 gf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 240 GFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 555555544 4443 3445667999999999999999999998877655
No 300
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=4.6 Score=47.70 Aligned_cols=142 Identities=13% Similarity=0.088 Sum_probs=93.7
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 001206 263 MMEEGLGNVHVALRYLHKALKCNQRLLGPD--HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQD 340 (1124)
Q Consensus 263 ~iy~~lGdyeeAle~lekALei~~k~lG~d--~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~ 340 (1124)
..++.+++|.+|..+-+..+.-. ...... +...+.+|+.+..+|...|+...-...+..-+.. ..++.+......
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i-~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrt--AtLrhd~e~qav 210 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASI-SIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRT--ATLRHDEEGQAV 210 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH-HhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH--hhhcCcchhHHH
Confidence 33455688888888777665432 111111 2235678999999999999977666666544443 334444443333
Q ss_pred HHHHHH--HHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 341 AAAWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 341 a~~~La--~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
...+|. ++..+.++++..+......+... ....++..++++|.+..-+++|..|.+++-+|++...+
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~----snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAA----SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCcccc----ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 444443 66666777777665544444322 22368889999999999999999999999999987765
No 301
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.38 E-value=2 Score=54.73 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=72.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001206 184 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 263 (1124)
Q Consensus 184 lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~ 263 (1124)
.++|.+|+....+.+.- ||....+...-|..+.++|++++|..+++. ++. .. .+ .-.++..+-.
T Consensus 22 ~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~-~~~---~~-~~---D~~tLq~l~~ 85 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEA-LYG---LK-GT---DDLTLQFLQN 85 (932)
T ss_pred hHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhh-hcc---CC-CC---chHHHHHHHH
Confidence 35666666665555442 677777777789999999999999965543 322 12 22 3455667788
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHH
Q 001206 264 MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL 315 (1124)
Q Consensus 264 iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~ee 315 (1124)
+|..++++++|..+|++++..+ |. -..++.+=.+|.+.+.|.+
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998754 22 2334444555666666553
No 302
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=92.24 E-value=22 Score=39.54 Aligned_cols=186 Identities=15% Similarity=0.140 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDH 209 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~-lGdydeAle~~~KALeI~er~lg~D~ 209 (1124)
.+..+|+++.+.|+|++++.++++++... ......=.+.|+.+|-. .|....+...+.... .+..+...
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e---~~~~~~~~ 72 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIE---QKEENKGN 72 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHh---hhhcccch
Confidence 46778899999999999999999988761 12223334445555422 122222222221111 11111111
Q ss_pred hhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCCC--Chh-HHHHHHHHHHHHHHC-----C-----CHHHHH
Q 001206 210 PDTMKSYGDLAVFYYRLQHT-ELALKYVKRALYLLHLTCGPS--HPN-TAATYINVAMMEEGL-----G-----NVHVAL 275 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~lGdy-eeAley~ekALei~ek~~G~d--hp~-~a~al~nLA~iy~~l-----G-----dyeeAl 275 (1124)
.... ..+-....+. ++=..++..++.+....+-+. .+. .+..+-..|..|..+ | -.++|.
T Consensus 73 ~~~~------~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 146 (236)
T PF00244_consen 73 EKQV------KLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKAL 146 (236)
T ss_dssp HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred hHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHH
Confidence 1111 1111111111 223345555555554432211 111 122222335444422 1 247899
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhcC
Q 001206 276 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQILRAKLG 332 (1124)
Q Consensus 276 e~lekALei~~k~lG~d~p~~A~a~~nLA~ly~-~lGd~eeAle~lekALei~~k~lG 332 (1124)
..|++|+.+....+.+.||.......+.+..|+ -+|+.++|+...++|++-....++
T Consensus 147 ~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 147 EAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred HhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 999999999999889999988888888888775 489999999999999988776554
No 303
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.21 E-value=6.1 Score=46.70 Aligned_cols=148 Identities=16% Similarity=0.047 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---------------------CCchhHHHHHHHHHHHHhcCCH
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---------------------YHRMTAGAYSLLAVVLYHTGDF 187 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~---------------------d~p~~A~ay~nLG~ly~~lGdy 187 (1124)
...|++++.++..+|++..|.+++++||-.++..+.. .+...-.+++.....+.++|.+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 6778999999999999999999999999887743211 1233445666677788889999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001206 188 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 267 (1124)
Q Consensus 188 deAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~ 267 (1124)
..|+++++-.+.+ .++ .|-..++..|-....+.++|+=-+++++......... .........+.+|.++..
T Consensus 120 rTAlE~~KlLlsL-----dp~-~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 120 RTALEWCKLLLSL-----DPD-EDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHHHHHHHHhc-----CCC-CCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHHHHHHH
Confidence 9999998877776 232 1234455566667778888887777776654421100 000112345677888888
Q ss_pred CCCH---------------HHHHHHHHHHHHHH
Q 001206 268 LGNV---------------HVALRYLHKALKCN 285 (1124)
Q Consensus 268 lGdy---------------eeAle~lekALei~ 285 (1124)
+++- ++|...+++|+..+
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 8888 89999999999876
No 304
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.19 E-value=14 Score=42.91 Aligned_cols=153 Identities=15% Similarity=0.057 Sum_probs=92.0
Q ss_pred CCchhHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001206 166 YHRMTAGAYSLLAVVLYHTGD-----FNQATIYQQKALDINEREL--GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKR 238 (1124)
Q Consensus 166 d~p~~A~ay~nLG~ly~~lGd-----ydeAle~~~KALeI~er~l--g~D~p~~a~ay~nLA~iy~~lGdyeeAley~ek 238 (1124)
.+|....+|..|....-..-. -.......++-+.|+++.+ .+++..+...|..+|. ...+-++..+-+++
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~---~~~~~~~l~~~we~ 90 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGE---KVWDSEKLAKKWEE 90 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HhCCHHHHHHHHHH
Confidence 356666666666655443322 2222233333334433332 2445555555555443 44566666666777
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC----------cHHHHHHHHHHHHHHH
Q 001206 239 ALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD----------HIQTAASYHAIAIALS 308 (1124)
Q Consensus 239 ALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d----------~p~~A~a~~nLA~ly~ 308 (1124)
++.. .++.+.+-..|...-......-.++.....|.++|.......... ......++..++..+.
T Consensus 91 ~l~~-----~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 91 LLFK-----NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHH-----CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 6653 223444444444444444455678899999999999876654332 2345667788888889
Q ss_pred HcCChHHHHHHHHHHHHH
Q 001206 309 LMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 309 ~lGd~eeAle~lekALei 326 (1124)
+.|..+.|+..++-.+++
T Consensus 166 ~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEF 183 (321)
T ss_pred HCCchHHHHHHHHHHHHH
Confidence 999999999999987776
No 305
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=10 Score=43.40 Aligned_cols=126 Identities=17% Similarity=0.082 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001206 175 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 254 (1124)
Q Consensus 175 ~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~ 254 (1124)
..-+.-....|++.+|...|..++... ++...+...|+.+|...|+.+.|...+...=.- .....
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-------~~~~~ 202 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-------AQDKA 202 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-------chhhH
Confidence 334556677899999999999999874 334667788999999999999998877652111 11111
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001206 255 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 324 (1124)
Q Consensus 255 a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekAL 324 (1124)
...+..--.++.+.....+...+-++ +. ..|....+.+.||..|...|+.++|++++-..+
T Consensus 203 ~~~l~a~i~ll~qaa~~~~~~~l~~~-~a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 203 AHGLQAQIELLEQAAATPEIQDLQRR-LA--------ADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHH-HH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11111111122222222222121111 11 123445677889999999999999999875433
No 306
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=5.5 Score=46.12 Aligned_cols=140 Identities=12% Similarity=0.025 Sum_probs=97.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 001206 143 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 222 (1124)
Q Consensus 143 GdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~i 222 (1124)
+.++.-+.++..+++...+. .........-..|..+|+..++|.+|+.+....+.-+++. .|...+...+..=..+
T Consensus 102 ~~~~~~i~l~~~cIeWA~~e--kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~ 177 (411)
T KOG1463|consen 102 DGTGDQIELCTECIEWAKRE--KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKA 177 (411)
T ss_pred CCcchHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHH
Confidence 33445556666666554432 0011122234568889999999999999998888877775 4455566677777888
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 223 YYRLQHTELALKYVKRALYLLHLTCGPSHPNT-AATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 223 y~~lGdyeeAley~ekALei~ek~~G~dhp~~-a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
|+.+.+..+|...+..|......++- .|.. +..-..-|.++..-.+|.-|..||-+|++-+...
T Consensus 178 y~~l~Nl~KakasLTsART~AnaiYc--pPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~ 242 (411)
T KOG1463|consen 178 YHALRNLPKAKASLTSARTTANAIYC--PPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL 242 (411)
T ss_pred HHHHhcchhHHHHHHHHHHhhccccc--CHHHHHHHHHhccceeecccccchHHHHHHHHHcccccc
Confidence 99999999999888888776655552 3333 3334455777888899999999999999887544
No 307
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.92 E-value=4 Score=56.92 Aligned_cols=177 Identities=20% Similarity=0.091 Sum_probs=112.6
Q ss_pred hcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001206 122 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 201 (1124)
Q Consensus 122 ~~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~ 201 (1124)
.......++.+++.|++....|+++.|..++-.|.+. ....++...|..++.+|+-..|+.++++.+...
T Consensus 1663 ~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----------r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1663 SNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES----------RLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred ccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----------ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 3556778999999999999999999999998888765 245689999999999999999999999999765
Q ss_pred HHhcCC---------CChhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHH-----HHHHH
Q 001206 202 ERELGL---------DHPDTMKSYGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYIN-----VAMME 265 (1124)
Q Consensus 202 er~lg~---------D~p~~a~ay~nLA~iy~~lGdy--eeAley~ekALei~ek~~G~dhp~~a~al~n-----LA~iy 265 (1124)
.--+-. +......+...++......+++ +.-+++|+.+.++..+..+ .|-..+..|.. .+..+
T Consensus 1733 ~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~-~hy~l~~yy~kll~~~~~~~~ 1811 (2382)
T KOG0890|consen 1733 FPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWED-KHYHLGKYYDKLLEDYKSNKM 1811 (2382)
T ss_pred cccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccC-ceeeHHHHHHHHhhhhhcccc
Confidence 432111 1111223455556666666665 4567888888887653221 12222211111 12223
Q ss_pred HHCCCHHH---HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 001206 266 EGLGNVHV---ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL 309 (1124)
Q Consensus 266 ~~lGdyee---Ale~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~ 309 (1124)
...|++.. |+.+|.+|+..-.+..-..-|.....|..+|..+..
T Consensus 1812 E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~ 1858 (2382)
T KOG0890|consen 1812 EKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISS 1858 (2382)
T ss_pred cccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcc
Confidence 34566655 666666777654333333345555666666555543
No 308
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.75 E-value=1.4 Score=40.82 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 204 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~ 204 (1124)
.++...+.|.-++.+.+.++|+..++++|... .+.++...++..|..+|...|+|.+++.+..+=+++++..
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46777888888899999999999999999874 3355677888899999999999999999998888887764
No 309
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.26 E-value=1.5 Score=50.97 Aligned_cols=63 Identities=19% Similarity=0.140 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHH
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQ 189 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdyde 189 (1124)
.....++..|+.++.+++|+.|...|.+|..++..++|..|..+..+++.+|..++..+++..
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~ 101 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEES 101 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999999999999999999988766553
No 310
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.20 E-value=1.8 Score=51.04 Aligned_cols=106 Identities=17% Similarity=0.149 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--h
Q 001206 211 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR--L 288 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k--~ 288 (1124)
.+-.++..||..|...|+++.|+++|-++...+.. ...++..+.|+-.+-..+|+|..-..+-.+|...... .
T Consensus 148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~ 222 (466)
T KOG0686|consen 148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN 222 (466)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence 46778999999999999999999999998887643 3456788888888888999999888888888765210 0
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 323 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekA 323 (1124)
....-+..+.|+. |.+...+++|..|..+|-.+
T Consensus 223 ~~q~v~~kl~C~a--gLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 223 LAQEVPAKLKCAA--GLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHhcCcchHHHH--HHHHHHHHHHHHHHHHHHhC
Confidence 0011122244454 44455566899888887644
No 311
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.15 E-value=4.3 Score=44.05 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=68.5
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 001206 200 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH 279 (1124)
Q Consensus 200 I~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~le 279 (1124)
+.+.+.+..+|.+ ...++.+-.-++|++-|-++ .|......+...+.||..|. ..+.++|+.+|.
T Consensus 100 L~~~tk~S~dP~l-------lYy~Wsr~~d~~A~~~fL~~-------E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~ 164 (203)
T PF11207_consen 100 LQEETKNSQDPYL-------LYYHWSRFGDQEALRRFLQL-------EGTPELETAELQYALATYYT-KRDPEKTIQLLL 164 (203)
T ss_pred HHHHHccCCCccH-------HHHHhhccCcHHHHHHHHHH-------cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHH
Confidence 3444445666653 33344554456676665543 23344556788888998887 568999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q 001206 280 KALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 318 (1124)
Q Consensus 280 kALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle 318 (1124)
++|++... ++.....++..||.+|..+|+++.|.-
T Consensus 165 ~~L~l~~~----~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 165 RALELSNP----DDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHhcCC----CCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 99998742 222345778899999999999998854
No 312
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=91.09 E-value=0.3 Score=58.36 Aligned_cols=95 Identities=21% Similarity=0.201 Sum_probs=82.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001206 175 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 254 (1124)
Q Consensus 175 ~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~ 254 (1124)
-+-|.-++.-++|+.|+.+|-||+++ ++..+..+.+-+..+...++|..|+.-+.+|+++ .|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence 34455666778999999999999997 5667788889999999999999999999999984 5888
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 255 AATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 255 a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
+.+|+.-|.++..++++.+|+..|++...+.
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999999887765
No 313
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.01 E-value=17 Score=42.26 Aligned_cols=127 Identities=13% Similarity=0.041 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001206 146 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 225 (1124)
Q Consensus 146 eeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~ 225 (1124)
+.-+.+|++||+. .+++..+...|.. ++....+-++....+++++.. ....+.+...|.+.-...+.
T Consensus 48 E~klsilerAL~~-----np~~~~L~l~~l~---~~~~~~~~~~l~~~we~~l~~-----~~~~~~LW~~yL~~~q~~~~ 114 (321)
T PF08424_consen 48 ERKLSILERALKH-----NPDSERLLLGYLE---EGEKVWDSEKLAKKWEELLFK-----NPGSPELWREYLDFRQSNFA 114 (321)
T ss_pred HHHHHHHHHHHHh-----CCCCHHHHHHHHH---HHHHhCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHhc
Confidence 4455667776665 2333333333333 444555677777777777765 23455566666555555556
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 226 LQHTELALKYVKRALYLLHLTCGPS----------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 226 lGdyeeAley~ekALei~ek~~G~d----------hp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.-.+......|.++|..+....... ....+.++.++...+...|..+.|+..++-.+++.
T Consensus 115 ~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 115 SFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred cCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 6678999999999999876654322 23456778888999999999999999999999886
No 314
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=90.85 E-value=7.5 Score=46.26 Aligned_cols=144 Identities=16% Similarity=0.059 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLL--AVVLYHTGDFNQATIYQQKALDINER 203 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nL--G~ly~~lGdydeAle~~~KALeI~er 203 (1124)
...+...+..+..++..++|..|.++|...+.. +- .. .. ...+..| |..++..-++.+|.+++++.+.....
T Consensus 128 ~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~-~~-~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~ 201 (379)
T PF09670_consen 128 EVFGDREWRRAKELFNRYDYGAAARILEELLRR---LP-GR-EE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKA 201 (379)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC-ch-hh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhh
Confidence 345667788888999999999999999998764 21 11 11 3445555 45567788999999999987764211
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001206 204 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 283 (1124)
Q Consensus 204 ~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALe 283 (1124)
-......+..+..+. +++..+...+.........-.......++..|.--..+|+|+.|...+-++++
T Consensus 202 -----l~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 202 -----LNQEREGLKELVEVL-------KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred -----hHhHHHHHHHHHHHH-------HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 000011111111111 12222222222111100000122333444445555678999999999999999
Q ss_pred HHHH
Q 001206 284 CNQR 287 (1124)
Q Consensus 284 i~~k 287 (1124)
+.-+
T Consensus 270 l~~Q 273 (379)
T PF09670_consen 270 LLAQ 273 (379)
T ss_pred HHHH
Confidence 8643
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.68 E-value=22 Score=47.09 Aligned_cols=99 Identities=13% Similarity=-0.005 Sum_probs=51.5
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------HHHhcCCCcHHH
Q 001206 225 RLQHTELALKYVKRALYLLHLTCG--PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC------NQRLLGPDHIQT 296 (1124)
Q Consensus 225 ~lGdyeeAley~ekALei~ek~~G--~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei------~~k~lG~d~p~~ 296 (1124)
+.+.|.+|+.+|.--.+..+..+- .+|-....-+..-|.+|...|+.++|++.|+.+... ..+.. ...-..
T Consensus 920 kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~-~~~de~ 998 (1265)
T KOG1920|consen 920 KHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLS-EGKDEL 998 (1265)
T ss_pred hcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhc-CCHHHH
Confidence 455566666655433332222110 011112222345677888889999999888765543 32221 111122
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001206 297 AASYHAIAIALSLMEAYPLSVQHEQTTL 324 (1124)
Q Consensus 297 A~a~~nLA~ly~~lGd~eeAle~lekAL 324 (1124)
...-..|+.-+..++++-+|-+.+.+.+
T Consensus 999 ~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 999 VILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 2223456666777777777766655444
No 316
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=90.57 E-value=2.5 Score=53.04 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 001206 294 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 334 (1124)
Q Consensus 294 p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~d 334 (1124)
...+.+|..+|.+-..+|-|+.|.. +++|+.|..+..+.+
T Consensus 939 ~~aa~aye~~gK~~Ea~gay~sA~m-wrec~si~~q~~~~e 978 (1243)
T COG5290 939 ISAAKAYEVEGKYIEAHGAYDSALM-WRECGSISTQEKGYE 978 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHhhhcchH
Confidence 3344455555555555555555543 344555655555544
No 317
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=90.46 E-value=34 Score=38.38 Aligned_cols=188 Identities=15% Similarity=0.063 Sum_probs=107.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 132 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDHP 210 (1124)
Q Consensus 132 Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~-lGdydeAle~~~KALeI~er~lg~D~p 210 (1124)
+..+|.+.-+.++|++.+.+..+++.+.. + ......=.+.|..+|-. .|....+...+.. ++..+...|. .
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~----~-~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~--~ 75 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVD----S-EELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGN--E 75 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcC----C-ccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCc--h
Confidence 45677888889999999999998766421 0 11233344555555532 3555555554433 2222111111 1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC--hh-HHHHHHHHHHHHHHC-----CC-----HHHHHHH
Q 001206 211 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH--PN-TAATYINVAMMEEGL-----GN-----VHVALRY 277 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dh--p~-~a~al~nLA~iy~~l-----Gd-----yeeAle~ 277 (1124)
.. ..+..-|. ..=-++=..++...+.+....+-+.. +. ....+-..|..|..+ |+ .++|.+.
T Consensus 76 ~~----~~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~a 150 (244)
T smart00101 76 DH----VASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVA 150 (244)
T ss_pred HH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 11 01111111 11123445566777777665543321 11 222222334444432 22 4589999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhcC
Q 001206 278 LHKALKCNQRLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQILRAKLG 332 (1124)
Q Consensus 278 lekALei~~k~lG~d~p~~A~a~~nLA~ly~-~lGd~eeAle~lekALei~~k~lG 332 (1124)
|++|+++....+.+.||.......+.+..|+ -+++.++|....++|++-....+.
T Consensus 151 Y~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld 206 (244)
T smart00101 151 YKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELD 206 (244)
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999887788889888877778877766 469999999888888876654443
No 318
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.33 E-value=4 Score=48.49 Aligned_cols=120 Identities=15% Similarity=0.051 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CCchhHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHH
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YHRMTAGAYSLLAVVLYHTGD---FNQATIYQQKALDIN 201 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~---d~p~~A~ay~nLG~ly~~lGd---ydeAle~~~KALeI~ 201 (1124)
.|..+++.|+.++....|++|+.++-.|-+.+...... .-...+..-..+-+||+.+.+ +..|..-+..|-.-+
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 35668888999999999999999888887765432100 000112222334566666654 344554444444444
Q ss_pred HHhc-----------CCCChhH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 202 EREL-----------GLDHPDT---MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 247 (1124)
Q Consensus 202 er~l-----------g~D~p~~---a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~ 247 (1124)
++.+ |.+.|+. ++.+..-|.+.+.+|+-++|.++++.|...+.+..
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elk 301 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELK 301 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHee
Confidence 4433 4445543 35566779999999999999999999988776543
No 319
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.33 E-value=3.5 Score=45.94 Aligned_cols=92 Identities=17% Similarity=0.028 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 001206 144 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 223 (1124)
Q Consensus 144 dyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy 223 (1124)
.-...++++.+|+..+... ........+...||..|+..|+|++|+.+|+.+...+++- .-..-...++..|..|+
T Consensus 153 hs~~iI~lL~~A~~~f~~~--~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca 228 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKY--GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECA 228 (247)
T ss_pred hHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHH
Confidence 3445678888888887765 3355667778899999999999999999999998877652 23344567788899999
Q ss_pred HHcCCHHHHHHHHHHH
Q 001206 224 YRLQHTELALKYVKRA 239 (1124)
Q Consensus 224 ~~lGdyeeAley~ekA 239 (1124)
..+|+.+..+.+.-+.
T Consensus 229 ~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 229 KRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 9999988877765543
No 320
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.88 E-value=2.8 Score=38.84 Aligned_cols=69 Identities=20% Similarity=0.152 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 173 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 173 ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
-...-|.-++...+..+|+..++++|... .+.++...++..|..+|...|+|.++++|..+=+++.++.
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444555667888999999999999864 4467788999999999999999999999999888887765
No 321
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.06 E-value=0.14 Score=58.81 Aligned_cols=89 Identities=24% Similarity=0.307 Sum_probs=77.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 001206 180 VLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 259 (1124)
Q Consensus 180 ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~ 259 (1124)
-.+..|.++.|++.|..|+.+ .|..+..|..-|.++..+++...|++-|..|+++ .++.+.-|-
T Consensus 123 eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~yk 186 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYK 186 (377)
T ss_pred HHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccc
Confidence 344568899999999999886 5778899999999999999999999999999986 566777777
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Q 001206 260 NVAMMEEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 260 nLA~iy~~lGdyeeAle~lekALei 284 (1124)
.-|.....+|+|++|..+|+.|+++
T Consensus 187 frg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 187 FRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred hhhHHHHHhhchHHHHHHHHHHHhc
Confidence 7888999999999999999988765
No 322
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.93 E-value=11 Score=42.96 Aligned_cols=134 Identities=12% Similarity=0.017 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 001206 144 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 223 (1124)
Q Consensus 144 dyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy 223 (1124)
+-++-++-+.+.++-.+...| ..+.+.++.++|..|.+.+|.+.+.+.+++.+.-...+ .-..+...+-..||.+|
T Consensus 90 kneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~l~kiRlg~~y 165 (412)
T COG5187 90 KNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVFLCKIRLGLIY 165 (412)
T ss_pred hhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHhh
Confidence 345556667777766665433 34678899999999999999999999988877654332 33456677777888888
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 224 YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 224 ~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
..+.-.++.++.....+ ++ |.+....-..-...|.......+|.+|..++-.++..+.
T Consensus 166 ~d~~vV~e~lE~~~~~i---Ek--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 166 GDRKVVEESLEVADDII---EK--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred ccHHHHHHHHHHHHHHH---Hh--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 76655555555444433 33 333333333333456777777889999999988887653
No 323
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.83 E-value=46 Score=37.56 Aligned_cols=158 Identities=13% Similarity=0.004 Sum_probs=84.4
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 001206 141 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 220 (1124)
Q Consensus 141 ~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA 220 (1124)
.+++|++|++++.+...+ +...|++.-|.++..-.++.+++.... .......+|.
T Consensus 2 ~~kky~eAidLL~~Ga~~----------------------ll~~~Q~~sg~DL~~lliev~~~~~~~---~~~~~~~rl~ 56 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALI----------------------LLKHGQYGSGADLALLLIEVYEKSEDP---VDEESIARLI 56 (260)
T ss_dssp HTT-HHHHHHHHHHHHHH----------------------HHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHH----------------------HHHCCCcchHHHHHHHHHHHHHHcCCC---CCHHHHHHHH
Confidence 456777777766655443 444555666666555555555552111 1222345666
Q ss_pred HHHHHcCCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----------HHHHHh
Q 001206 221 VFYYRLQHTE-LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL-----------KCNQRL 288 (1124)
Q Consensus 221 ~iy~~lGdye-eAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekAL-----------ei~~k~ 288 (1124)
.++.....-+ +-.++.++|+... + .+.........+..+|..|.+.|++.+|..+|-.+- ..+..
T Consensus 57 ~l~~~~~~~~p~r~~fi~~ai~WS-~-~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~- 133 (260)
T PF04190_consen 57 ELISLFPPEEPERKKFIKAAIKWS-K-FGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWST- 133 (260)
T ss_dssp HHHHHS-TT-TTHHHHHHHHHHHH-H-TSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHH-
T ss_pred HHHHhCCCCcchHHHHHHHHHHHH-c-cCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHH-
Confidence 6666655433 3455666777655 3 333344456778889999999999999998884221 11111
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
.|..+ .........-.-|...++...|...+..-.+.+
T Consensus 134 ~~~~~-e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~ 171 (260)
T PF04190_consen 134 KGYPS-EADLFIARAVLQYLCLGNLRDANELFDTFTSKL 171 (260)
T ss_dssp HTSS---HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred hcCCc-chhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 12211 112222233345667899999988777666553
No 324
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=88.44 E-value=0.25 Score=32.97 Aligned_cols=13 Identities=46% Similarity=0.876 Sum_probs=10.4
Q ss_pred CCCCCCCCccCCC
Q 001206 926 NGNSNVPEFIPGP 938 (1124)
Q Consensus 926 ~~~~~~~~f~p~~ 938 (1124)
.+||+|.||||+.
T Consensus 5 ~LNp~A~eFvP~~ 17 (18)
T PF07145_consen 5 KLNPNAPEFVPSS 17 (18)
T ss_dssp SSSTTSSSS-TTT
T ss_pred ccCCCCccccCCC
Confidence 4899999999973
No 325
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=88.42 E-value=8.4 Score=41.26 Aligned_cols=142 Identities=19% Similarity=0.167 Sum_probs=91.6
Q ss_pred hhhhhhcCChHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhc-----CC
Q 001206 117 PVHKQAACSSADGRQLLESSKTAL-----DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-----GD 186 (1124)
Q Consensus 117 pv~K~~~~~s~~Ar~Ll~lG~~yl-----~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~l-----Gd 186 (1124)
.+.|........+...|..|..++ ..+++..|+++|..+... ....+..++|.+++.- ++
T Consensus 56 kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~~~r~~d 125 (248)
T KOG4014|consen 56 KVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGEKDRKAD 125 (248)
T ss_pred HHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCcCCccCC
Confidence 344444444455666677776654 345788888888877653 3456778888887653 23
Q ss_pred --HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc------------------------CCHHHHHHHHHHHH
Q 001206 187 --FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL------------------------QHTELALKYVKRAL 240 (1124)
Q Consensus 187 --ydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~l------------------------GdyeeAley~ekAL 240 (1124)
..+|++|+.+|.++- ...+.++|...|..- .+.++|+++-.+|-
T Consensus 126 pd~~Ka~~y~traCdl~----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kAC 195 (248)
T KOG4014|consen 126 PDSEKAERYMTRACDLE----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKAC 195 (248)
T ss_pred CCcHHHHHHHHHhccCC----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHH
Confidence 678888888887651 133444455444432 45566666666665
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHh
Q 001206 241 YLLHLTCGPSHPNTAATYINVAMMEEGL----GNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 241 ei~ek~~G~dhp~~a~al~nLA~iy~~l----GdyeeAle~lekALei~~k~ 288 (1124)
++ ++ ..+..|+..+|..- .+-++|..|-.+|+++.++.
T Consensus 196 el-------~~---~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 196 EL-------DI---PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred hc-------CC---hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 53 33 45667888887642 46889999999999998765
No 326
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=88.38 E-value=0.9 Score=55.21 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=74.0
Q ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 001206 218 DLAVFY-YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 296 (1124)
Q Consensus 218 nLA~iy-~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~ 296 (1124)
|+|-+| ..+|+...|..|+.+|+... .......+.+||.++..-|-...|-.++.++|.+.- . -
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~-------p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-----s---e 675 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLA-------PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-----S---E 675 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccC-------hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-----c---C
Confidence 445444 45799999999999998642 112234567899999999999999999999998861 1 1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 297 AASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 297 A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
...++.+|.+|..+.+.+.|+++|++|++.
T Consensus 676 pl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 676 PLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred chHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 245678899999999999999999999986
No 327
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.92 E-value=1.1 Score=35.85 Aligned_cols=35 Identities=34% Similarity=0.438 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 172 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 172 ~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
.+|..||.+....++|++|+.-|+++|.+.++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999887653
No 328
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.63 E-value=39 Score=42.32 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 001206 132 LLESSKTALDKGKLEDAVTYGTK 154 (1124)
Q Consensus 132 Ll~lG~~yl~qGdyeeAl~~f~k 154 (1124)
+.+.|+++...|.-..|+++|..
T Consensus 648 F~EAAklFk~~G~enRAlEmyTD 670 (1081)
T KOG1538|consen 648 FHEAAKLFKRSGHENRALEMYTD 670 (1081)
T ss_pred HHHHHHHHHHcCchhhHHHHHHH
Confidence 44455556666666666666554
No 329
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=87.56 E-value=17 Score=43.23 Aligned_cols=139 Identities=17% Similarity=0.057 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 173 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL--AVFYYRLQHTELALKYVKRALYLLHLTCGPS 250 (1124)
Q Consensus 173 ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nL--A~iy~~lGdyeeAley~ekALei~ek~~G~d 250 (1124)
.....+.-++..++|..|...+...+.. + .... . ...+..| |..++...++.+|.++++..+......
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l-~~~~-~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l---- 202 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRR---L-PGRE-E-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL---- 202 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh---C-Cchh-h-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh----
Confidence 4455667778899999999999887753 2 1111 1 3444444 566678888999999999987642210
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 001206 251 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 329 (1124)
Q Consensus 251 hp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k 329 (1124)
......+..+..+. ++...+...+.................++..|.--...|+|+.|+..+=++++++-+
T Consensus 203 -~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 203 -NQEREGLKELVEVL-------KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred -HhHHHHHHHHHHHH-------HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 00011111111111 222222222222211100001222333334444445789999999998889887654
No 330
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=87.53 E-value=3.9 Score=40.28 Aligned_cols=101 Identities=17% Similarity=0.132 Sum_probs=60.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 135 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHP 210 (1124)
Q Consensus 135 lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~l----GdydeAle~~~KALeI~er~lg~D~p 210 (1124)
.+..++.+|++-+|+++.++.+.... . +......+..-|.+++.+ .+.+-=..|+.-+++-+.+... -.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~----~-~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG----E-DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc----C-CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence 46678899999999999999887632 2 222224555666666544 3444444455555555544322 245
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001206 211 DTMKSYGDLAVFYYRLQHTELALKYVKRALY 241 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lGdyeeAley~ekALe 241 (1124)
..+..++.||.-+.....|++++.-.+++|.
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5566777777655555555555555555554
No 331
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=87.52 E-value=13 Score=43.10 Aligned_cols=131 Identities=12% Similarity=0.043 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 001206 147 DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL 226 (1124)
Q Consensus 147 eAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~l 226 (1124)
+-++-+.+.++-.++.+|. .+...++.++|..|++.||-+.|++.+++...-.-.+ ....+...+...||.+|...
T Consensus 82 eki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D~ 157 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLDH 157 (393)
T ss_pred HHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhccH
Confidence 3445566666666655553 3678899999999999999999999988876543221 22356677778888888755
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 227 QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 227 GdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
.-. -+..++|-.++++ |.|....-..-..-|..+....+|.+|..+|-.++..+.
T Consensus 158 ~lV---~~~iekak~liE~--GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 158 DLV---TESIEKAKSLIEE--GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHH---HHHHHHHHHHHHh--CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 433 3444455555555 333333333333457777788899999999988887653
No 332
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=87.21 E-value=2.6 Score=52.75 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=13.4
Q ss_pred cccceeeccCCCCCCCCcccC
Q 001206 828 ASAVAINMTLPPGPGAVTAVA 848 (1124)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~ 848 (1124)
++|+.++-++||-|++.||++
T Consensus 547 pPPlpggag~PPPPpplPg~a 567 (1102)
T KOG1924|consen 547 PPPLPGGAGPPPPPPPLPGIA 567 (1102)
T ss_pred CCCCCCCCCCCccCCCCCccc
Confidence 346666666666666666654
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.03 E-value=0.89 Score=33.49 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 215 SYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 215 ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
+++++|.+|..+|++++|+++|++.+..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6789999999999999999999998874
No 334
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.64 E-value=73 Score=42.04 Aligned_cols=96 Identities=21% Similarity=0.298 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001206 133 LESSKTALDKGKLEDAVTYGTKALAK-----------------LVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQ 195 (1124)
Q Consensus 133 l~lG~~yl~qGdyeeAl~~f~kAL~i-----------------~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~ 195 (1124)
-.++..+...|+|..|.+..++|-.. +.+++|-.-.-.+.-+-.|-..|...|-|++-+.+++
T Consensus 1224 a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1224 AKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 34455666778888888887776443 1233443333345556667778888888888888887
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001206 196 KALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVK 237 (1124)
Q Consensus 196 KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~e 237 (1124)
.+|-+-+. .+..+..||.+|.+- ++++-.++++
T Consensus 1304 a~LGLERA--------HMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1304 AGLGLERA--------HMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred hhhchhHH--------HHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 77765332 245567788877654 4555444443
No 335
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=86.63 E-value=4 Score=48.82 Aligned_cols=134 Identities=23% Similarity=0.155 Sum_probs=91.3
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcC---CCC---chhHHHHHHH----HHHHHhcCCHHHHHHHHHHHHH
Q 001206 131 QLLESSKTALD-KGKLEDAVTYGTKALAKLVAVCG---PYH---RMTAGAYSLL----AVVLYHTGDFNQATIYQQKALD 199 (1124)
Q Consensus 131 ~Ll~lG~~yl~-qGdyeeAl~~f~kAL~i~e~i~G---~d~---p~~A~ay~nL----G~ly~~lGdydeAle~~~KALe 199 (1124)
++--+|..|.. +.|.-.|+.++.++++....-.. ..+ |..+.-|... ..+-...+|.+ ++-.++|-
T Consensus 247 alEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d---~~RmqaLi 323 (615)
T KOG0508|consen 247 ALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPD---EMRMQALI 323 (615)
T ss_pred HHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChH---HHHHHHHH
Confidence 34444555543 34677899999999988665100 011 1111111111 11111112222 23357888
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001206 200 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 267 (1124)
Q Consensus 200 I~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~ 267 (1124)
+.++++|+.|+++.......|.+|..+|+++..+++..-||.+.++.+.+-.|.++..+...+.++..
T Consensus 324 irerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 324 IRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 99999999999987766778999999999999999999999999999988899999988888877654
No 336
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=86.58 E-value=7.4 Score=46.22 Aligned_cols=111 Identities=14% Similarity=0.057 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--CC----CCchh----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC--GP----YHRMT----AGAYSLLAVVLYHTGDFNQATIYQQKAL 198 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~--G~----d~p~~----A~ay~nLG~ly~~lGdydeAle~~~KAL 198 (1124)
.+..+.-|..++.+++|..|.--|..||+++.+.. +. ...+. ..+.-.|..||..+++.+.|+....+++
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 34556667788899999999999999999987532 11 11112 1234578999999999999999999988
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 199 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 247 (1124)
Q Consensus 199 eI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~ 247 (1124)
.+ +|....-+..-|.|+..+.+|.+|-+-+--|..++-...
T Consensus 256 ~l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g 296 (569)
T PF15015_consen 256 NL--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSG 296 (569)
T ss_pred hc--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 76 466677778889999999999999988888777765543
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.55 E-value=0.98 Score=33.27 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001206 172 GAYSLLAVVLYHTGDFNQATIYQQKALDI 200 (1124)
Q Consensus 172 ~ay~nLG~ly~~lGdydeAle~~~KALeI 200 (1124)
.+++.+|.+|..+|++++|+.+|++.+..
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 37899999999999999999999998875
No 338
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.47 E-value=0.97 Score=31.25 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 214 KSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 214 ~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
.++.++|.++..++++++|..+|++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 36789999999999999999999999874
No 339
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=86.25 E-value=0.98 Score=53.73 Aligned_cols=135 Identities=24% Similarity=0.219 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhc----CCCChhHHHHHHHHHHHHHHcCCHHHHHH--------HH
Q 001206 170 TAGAYSLLAVVLYHT-GDFNQATIYQQKALDINEREL----GLDHPDTMKSYGDLAVFYYRLQHTELALK--------YV 236 (1124)
Q Consensus 170 ~A~ay~nLG~ly~~l-GdydeAle~~~KALeI~er~l----g~D~p~~a~ay~nLA~iy~~lGdyeeAle--------y~ 236 (1124)
...++-.||..|... .|.-.|+.+++++++....-. ....... +++.-|.+.-+.-+-++ +-
T Consensus 244 riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p-----~~ay~~~re~~~~~elE~lv~D~d~~R 318 (615)
T KOG0508|consen 244 RIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEP-----VLAYGYGREVNNREELEELVEDPDEMR 318 (615)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCc-----hhhhhhhhhcCCHHHHHHHhcChHHHH
Confidence 356677777777543 467789999999998876510 0111111 12222222222222221 23
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 001206 237 KRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL 309 (1124)
Q Consensus 237 ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~ 309 (1124)
-++|-+.+.++|+.|+++.......|-+|..+|+++..+++++-||++.++.+.+-.+.++..+...+.++..
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 4677788899999999988777778999999999999999999999999999999999999999888888764
No 340
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.23 E-value=5.3 Score=52.08 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=14.9
Q ss_pred cHHHHHHHHHHHHHHcCChHH-HHHHH
Q 001206 377 SVSDLLDYINPSHDTKGRNVS-TLKRK 402 (1124)
Q Consensus 377 ~vaell~~Lg~~y~~qGdyee-Al~~y 402 (1124)
.+.+++..||.-+...|++.. |..+|
T Consensus 585 ~~~elc~~Lg~rl~~~g~~~~~a~lcY 611 (1049)
T KOG0307|consen 585 EFSELCDMLGDRLENAGDLTSAAILCY 611 (1049)
T ss_pred hHHHHHHHHHHHHhhccchhhhhhHHh
Confidence 355666777777666665333 44444
No 341
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=86.12 E-value=5.1 Score=49.12 Aligned_cols=99 Identities=22% Similarity=0.225 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 214 KSYGDLAVFYYR-LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 292 (1124)
Q Consensus 214 ~ay~nLA~iy~~-lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d 292 (1124)
..+.++|..|++ +|+..+|+.|+..|+-... +|. .-.++..||.++.+.|...+|--.+..|+.-+
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~-----~h~-kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA------- 279 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSS-----RHN-KDIALLSLATVLHRAGFSADAAVILHAALDDA------- 279 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCC-----ccc-ccchhhhHHHHHHHcccccchhheeehhccCC-------
Confidence 345567766664 6999999999999987532 222 23457789999999999999988887666543
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 293 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 293 ~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
+..+.-++.+|.+|..+++|...+.+|..+.+.
T Consensus 280 -~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 280 -DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred -ccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 233444788999999999999999999877664
No 342
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.08 E-value=26 Score=40.63 Aligned_cols=69 Identities=22% Similarity=0.082 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001206 125 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 203 (1124)
Q Consensus 125 ~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er 203 (1124)
..+..+.-+++-+......+-.+-++...+||++ ++..+.+|..||.--. .-..+|..++++||...+.
T Consensus 180 d~D~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~ 248 (556)
T KOG3807|consen 180 DTDFLRPEDEIMQKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEEA--TTIVDAERLFKQALKAGET 248 (556)
T ss_pred cccccChHHHHHHHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHH
Confidence 3334444445555556666777777778888877 6788888888876432 3467888888888876543
No 343
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.07 E-value=25 Score=43.50 Aligned_cols=175 Identities=14% Similarity=0.026 Sum_probs=101.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHh----cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC---------
Q 001206 226 LQHTELALKYVKRALYLLHLT----CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD--------- 292 (1124)
Q Consensus 226 lGdyeeAley~ekALei~ek~----~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d--------- 292 (1124)
...|++|...|.-|...+.-. .-..+|..+..+..+|.++..+|+.+-|..+.+++|-.+...+-+.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 345778888888777654210 1124788889999999999999999999999999998877653221
Q ss_pred ----c---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhHHHHHHHHhccC
Q 001206 293 ----H---IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD-DLRTQDAAAWLEYFESKAFEQQEAARNGTR 364 (1124)
Q Consensus 293 ----~---p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~d-h~~t~~a~~~La~l~~k~~e~aeAl~~~~~ 364 (1124)
+ .....+++..-..+.+.|-+..|+++++-.+.+ .+. +|.....+.-...+....|+.-..+.+...
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL-----dp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL-----DPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-----CCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1 112233344444556789999999988866654 443 554433332222223333333332222111
Q ss_pred CC-chhhhhcCCCcHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHh
Q 001206 365 KP-DASIASKGHLSVSDLLDYINPSHDTKGR---NVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 365 ~~-~~~~a~k~~~~vaell~~Lg~~y~~qGd---yeeAl~~yekALkL~~ 410 (1124)
.. ..... +.+. .-..|+..|..+.. -+.|+..+.+|++++.
T Consensus 406 ~~n~l~~~----PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 406 NMNKLSQL----PNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hhccHhhc----CCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 11 10100 1110 11134444544444 4569999999999988
No 344
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.49 E-value=31 Score=36.97 Aligned_cols=131 Identities=13% Similarity=0.026 Sum_probs=92.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001206 134 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 213 (1124)
Q Consensus 134 ~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a 213 (1124)
..+..+...++-++|+..|...-.- ....+-..+....|.+....|+...|+.+|..+-.. ...|...
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lekt------g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~~ 130 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKT------GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQIG 130 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhc------CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcchh
Confidence 3344555678888998888764332 112233456778899999999999999999876432 1123222
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001206 214 --KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 283 (1124)
Q Consensus 214 --~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALe 283 (1124)
.+...-|.++...|-|++-... .+.+-++.++....+...||..-++.|+|.+|..+|.....
T Consensus 131 rd~ARlraa~lLvD~gsy~dV~sr-------vepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 131 RDLARLRAAYLLVDNGSYDDVSSR-------VEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHHHHhccccHHHHHHH-------hhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2344457777888887765433 34445677888899999999999999999999999988665
No 345
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=85.00 E-value=6.6 Score=38.72 Aligned_cols=100 Identities=12% Similarity=0.190 Sum_probs=58.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 177 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL----QHTELALKYVKRALYLLHLTCGPSHP 252 (1124)
Q Consensus 177 LG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~l----GdyeeAley~ekALei~ek~~G~dhp 252 (1124)
+|.-++..|++-+|++..+..+... |. +......+..-|.++..+ .+.+-=..|+..+++-+.+... -.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h----~~-~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH----GE-DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc----cC-CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence 4677889999999999999988763 22 222234455556666543 3444444555556655544322 245
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001206 253 NTAATYINVAMMEEGLGNVHVALRYLHKAL 282 (1124)
Q Consensus 253 ~~a~al~nLA~iy~~lGdyeeAle~lekAL 282 (1124)
..+..++.||.-+....-|+++..-.+++|
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 567777777766544444444444444443
No 346
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=84.90 E-value=1.9 Score=34.48 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 001206 298 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 333 (1124)
Q Consensus 298 ~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~ 333 (1124)
.+|..||.+-...++|++|+.-|++|+.+.++.+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 578889999999999999999999999999887654
No 347
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=84.83 E-value=9.9 Score=38.21 Aligned_cols=74 Identities=23% Similarity=0.221 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC---Chh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 174 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLD---HPD----TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 174 y~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D---~p~----~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
+.++|......+++-.++-.|++|+.+.++..... ..+ ......|||.++..+|+.+=.++|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 56788899999999999999999999998863211 111 23457899999999999999999999988866554
Q ss_pred c
Q 001206 247 C 247 (1124)
Q Consensus 247 ~ 247 (1124)
.
T Consensus 84 i 84 (140)
T PF10952_consen 84 I 84 (140)
T ss_pred c
Confidence 3
No 348
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.69 E-value=1.3 Score=30.54 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001206 172 GAYSLLAVVLYHTGDFNQATIYQQKALDI 200 (1124)
Q Consensus 172 ~ay~nLG~ly~~lGdydeAle~~~KALeI 200 (1124)
.++..+|.++..++++++|+.++++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46889999999999999999999999875
No 349
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.45 E-value=5 Score=47.46 Aligned_cols=114 Identities=20% Similarity=0.150 Sum_probs=80.6
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001206 119 HKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 198 (1124)
Q Consensus 119 ~K~~~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KAL 198 (1124)
+|.-......-+.+.++|..|..-|+++.|++.|-++-..+.. ....+..+.++-.+-..+|+|..-..+..+|.
T Consensus 140 yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 140 YKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 4444445556678889999999999999999999997776543 34567788888889999999999888888887
Q ss_pred HHH---HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001206 199 DIN---ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 240 (1124)
Q Consensus 199 eI~---er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekAL 240 (1124)
... +.. ...-+ ..+...-|.+.+.+++|..|..+|-.+.
T Consensus 215 st~~~~~~~-~q~v~--~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 215 STPDANENL-AQEVP--AKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hCchhhhhH-HHhcC--cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 652 110 01111 2233444555556669999998887654
No 350
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=83.23 E-value=22 Score=41.17 Aligned_cols=131 Identities=9% Similarity=0.041 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 001206 189 QATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 268 (1124)
Q Consensus 189 eAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~l 268 (1124)
+-++-+.+.++-.++.+|. .....++.++|..|++.|+-+.|++.+++..+-.-.+. ..-++..+...||..|...
T Consensus 82 eki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~ 157 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDH 157 (393)
T ss_pred HHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccH
Confidence 3344556666666665553 45788999999999999999999999998876443322 2345566677788888654
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 001206 269 GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 328 (1124)
Q Consensus 269 GdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~ 328 (1124)
+--.+.+++|-.+.++-..-+......+| -|.......+|.+|-.+|-.++..|.
T Consensus 158 ---~lV~~~iekak~liE~GgDWeRrNRlKvY--~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 158 ---DLVTESIEKAKSLIEEGGDWERRNRLKVY--QGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred ---HHHHHHHHHHHHHHHhCCChhhhhhHHHH--HHHHHHHHHhHHHHHHHHHHHccccc
Confidence 33444455555555442111222233444 46666677888888888877776553
No 351
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.21 E-value=12 Score=39.32 Aligned_cols=92 Identities=22% Similarity=0.166 Sum_probs=70.6
Q ss_pred cCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001206 123 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 202 (1124)
Q Consensus 123 ~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~e 202 (1124)
.|.......+++.....+..++.+++..++. ++..+ .|.....-..-|.++...|+|.+|+.+++....
T Consensus 4 ~C~~~iv~gLie~~~~al~~~~~~D~e~lL~-ALrvL-------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~--- 72 (160)
T PF09613_consen 4 QCSDEIVGGLIEVLSVALRLGDPDDAEALLD-ALRVL-------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE--- 72 (160)
T ss_pred cCcHHHHHHHHHHHHHHHccCChHHHHHHHH-HHHHh-------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc---
Confidence 4555667778888888899999999988775 44443 577778888899999999999999999988533
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCCHH
Q 001206 203 RELGLDHPDTMKSYGDLAVFYYRLQHTE 230 (1124)
Q Consensus 203 r~lg~D~p~~a~ay~nLA~iy~~lGdye 230 (1124)
+.+....+-..++.|++.+|+.+
T Consensus 73 -----~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 -----RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred -----cCCCChHHHHHHHHHHHHcCChH
Confidence 23445555666888998888764
No 352
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.06 E-value=16 Score=46.79 Aligned_cols=49 Identities=18% Similarity=0.068 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001206 152 GTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 201 (1124)
Q Consensus 152 f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~ 201 (1124)
|.-|+.+++.. +.+...++.++...|.-++..|+|++|..+|-+++...
T Consensus 350 y~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 350 YKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 33444444433 23444677888999999999999999999999988753
No 353
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=83.00 E-value=79 Score=37.07 Aligned_cols=95 Identities=9% Similarity=0.125 Sum_probs=67.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001206 222 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 301 (1124)
Q Consensus 222 iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~ 301 (1124)
+..+.++.++|++++++..+-..... .......+...+|.++...|+..++.+.+.+.-.......+-.. .+-..|+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~--e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~-~Vh~~fY 160 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYK--EPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTS-NVHSSFY 160 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCCh-hhhhhHH
Confidence 34456689999999999988766532 12345667788899999999999999999998887766644332 2334455
Q ss_pred HHH-HHHHHcCChHHHHHH
Q 001206 302 AIA-IALSLMEAYPLSVQH 319 (1124)
Q Consensus 302 nLA-~ly~~lGd~eeAle~ 319 (1124)
.++ ..|...|+|..+..+
T Consensus 161 ~lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 555 455577888755443
No 354
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.97 E-value=64 Score=40.17 Aligned_cols=175 Identities=14% Similarity=0.018 Sum_probs=102.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHh----cCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC---------
Q 001206 142 KGKLEDAVTYGTKALAKLVAV----CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD--------- 208 (1124)
Q Consensus 142 qGdyeeAl~~f~kAL~i~e~i----~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D--------- 208 (1124)
...|++|...|.-|.....-. +-..+|+....+..+|.++..+|+.+.|..+.+++|-.+++.+.+.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 456778888887777654210 1125788899999999999999999999999999999888765321
Q ss_pred ----ChhH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001206 209 ----HPDT---MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHK 280 (1124)
Q Consensus 209 ----~p~~---a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~d-hp~~a~al~nLA~iy~~lGdyeeAle~lek 280 (1124)
++.. ..+++..-..+.+.|-+..|+++++-.+.+ .+. +|. .+++.+-.......+|+=-+++++.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL-----dp~eDPl--~~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL-----DPSEDPL--GILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-----CCcCCch--hHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 2221 122222223345677888888888776654 222 332 2333333344444555555555554
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHH
Q 001206 281 ALKCNQRLLGPDHIQTAASYHAIAIALSLMEA---YPLSVQHEQTTLQIL 327 (1124)
Q Consensus 281 ALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd---~eeAle~lekALei~ 327 (1124)
.-... ++. .-|..+. -..||..|..... ...|+..+.+|+..+
T Consensus 404 ~e~~n-~l~--~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 404 PENMN-KLS--QLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred HHhhc-cHh--hcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 32221 110 0111111 1235555655544 566778888887764
No 355
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.36 E-value=57 Score=43.44 Aligned_cols=185 Identities=15% Similarity=0.047 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------H--------hcCCC--ChhH-HHHHHHHHHHHHHCCCHHH
Q 001206 215 SYGDLAVFYYRLQHTELALKYVKRALYLLH----------L--------TCGPS--HPNT-AATYINVAMMEEGLGNVHV 273 (1124)
Q Consensus 215 ay~nLA~iy~~lGdyeeAley~ekALei~e----------k--------~~G~d--hp~~-a~al~nLA~iy~~lGdyee 273 (1124)
..+.+|.+|...|+.-+|+.+|.+|+.-.. . ..|+. .+.+ ...|...-.++..-+..+.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 346689999999999999999999886221 1 01111 1111 2233333444555555555
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhH
Q 001206 274 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAF 353 (1124)
Q Consensus 274 Ale~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~ 353 (1124)
++++.-+|++- ++.+.+..+.++..+=.-+.++|.+-+|...+-+ .++......++..|....-...
T Consensus 1002 vcQlA~~AIe~----l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~---------npdserrrdcLRqlvivLfecg 1068 (1480)
T KOG4521|consen 1002 VCQLAVKAIEN----LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR---------NPDSERRRDCLRQLVIVLFECG 1068 (1480)
T ss_pred HHHHHHHHHHh----CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc---------CCcHHHHHHHHHHHHHHHHhcc
Confidence 55555555543 3566677777777777777778877777553321 2444445555555543222211
Q ss_pred HHHHHHHhccCCCc--------hhhhhcCCCcHHHHHHHHHHHHHHcCChHHHH-HHHHHHHHHHhhh
Q 001206 354 EQQEAARNGTRKPD--------ASIASKGHLSVSDLLDYINPSHDTKGRNVSTL-KRKTYVAKVKGNF 412 (1124)
Q Consensus 354 e~aeAl~~~~~~~~--------~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl-~~yekALkL~~sl 412 (1124)
+...-....-.... ...+..........|..|-..+..++++.+|. -.|+.++++....
T Consensus 1069 ~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se~ 1136 (1480)
T KOG4521|consen 1069 ELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESET 1136 (1480)
T ss_pred chHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcccc
Confidence 11110000000000 00001111122346777777889999999955 6788888876653
No 356
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=82.28 E-value=1.8e+02 Score=38.94 Aligned_cols=69 Identities=20% Similarity=0.044 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001206 171 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 241 (1124)
Q Consensus 171 A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALe 241 (1124)
-.+.+.+|..+..+..-..--+.|.+||..++++.+. +....-|..-|.+|.++|+|++-+++|.-|+.
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (932)
T PRK13184 512 YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLGKALVYQRLGEYNEEIKSLLLALK 580 (932)
T ss_pred hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3455666666554432222224566666666655432 22334466667777777777777777776665
No 357
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=81.67 E-value=24 Score=40.27 Aligned_cols=132 Identities=10% Similarity=0.087 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001206 188 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 267 (1124)
Q Consensus 188 deAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~ 267 (1124)
++-++-+.++++-.+...| ......++.|+|..|...++.+.+.+++.+.+.-.-... -.-+...+...||.+|..
T Consensus 92 eeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 92 EEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred HHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHhhcc
Confidence 4445555556655544322 235688999999999999999999999999887554432 233455566778888866
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 001206 268 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 328 (1124)
Q Consensus 268 lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~ 328 (1124)
+.-.++.++..+. +.++ |.+-...-+.-...|.......+|.+|-.++-.++..|.
T Consensus 168 ~~vV~e~lE~~~~---~iEk--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 168 RKVVEESLEVADD---IIEK--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHH---HHHh--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 6555554444443 3322 222111122222346666667788888887777766554
No 358
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=81.53 E-value=10 Score=38.16 Aligned_cols=73 Identities=18% Similarity=0.073 Sum_probs=58.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC---h----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 216 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH---P----NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 216 y~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dh---p----~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
+..+|...+..+++-.|+-+|++|+.+.+++...+. . .......|||..|..+|+-+-.++|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999887632111 1 124567899999999999999999999887765443
No 359
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.44 E-value=6.7 Score=42.58 Aligned_cols=66 Identities=21% Similarity=0.186 Sum_probs=51.8
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 001206 206 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 276 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle 276 (1124)
|....+++...+.||..|. ..+.++|+.+|.++|++... ++.-...++..||.+|..+|++++|.-
T Consensus 134 ~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 134 GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 4444567788888998887 56899999999999998543 323346778889999999999999853
No 360
>PRK10941 hypothetical protein; Provisional
Probab=81.00 E-value=12 Score=42.64 Aligned_cols=80 Identities=21% Similarity=0.197 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 212 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 291 (1124)
Q Consensus 212 ~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~ 291 (1124)
+.+.+.||=.+|.+.++++.|+++.++.+.+ .++++ .-+...|.+|.++|.+..|..-|+.-++.+ +
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l-----~P~dp---~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P 246 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQF-----DPEDP---YEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----P 246 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----C
Confidence 4567889999999999999999999999885 34444 444567999999999999999999888876 5
Q ss_pred CcHHHHHHHHHHH
Q 001206 292 DHIQTAASYHAIA 304 (1124)
Q Consensus 292 d~p~~A~a~~nLA 304 (1124)
+.+....+...+.
T Consensus 247 ~dp~a~~ik~ql~ 259 (269)
T PRK10941 247 EDPISEMIRAQIH 259 (269)
T ss_pred CchhHHHHHHHHH
Confidence 5565544444443
No 361
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=80.92 E-value=9.5 Score=50.25 Aligned_cols=104 Identities=16% Similarity=0.119 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 001206 189 QATIYQQKALDINERELG--LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 266 (1124)
Q Consensus 189 eAle~~~KALeI~er~lg--~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~ 266 (1124)
-|...|.+|+..++++.. +...+-..+.+.+|..+..+-.-..--+.|.+||..++.+.+ .+...--|..-|.+|+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 563 (932)
T PRK13184 486 LAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAPLEYLGKALVYQ 563 (932)
T ss_pred HhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCchHHHhHHHHHH
Confidence 344444444444444311 112234567777888777654433333678888888877664 3333445667788999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 001206 267 GLGNVHVALRYLHKALKCNQRLLGPDHIQTAAS 299 (1124)
Q Consensus 267 ~lGdyeeAle~lekALei~~k~lG~d~p~~A~a 299 (1124)
.+|+|++-+++|.-|++.+ ..||.....
T Consensus 564 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 591 (932)
T PRK13184 564 RLGEYNEEIKSLLLALKRY-----SQHPEISRL 591 (932)
T ss_pred HhhhHHHHHHHHHHHHHhc-----CCCCccHHH
Confidence 9999999999999999887 566665544
No 362
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=80.42 E-value=19 Score=42.89 Aligned_cols=100 Identities=15% Similarity=0.084 Sum_probs=73.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC------ChhH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 001206 220 AVFYYRLQHTELALKYVKRALYLLHLTCGPS------HPNT----AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 289 (1124)
Q Consensus 220 A~iy~~lGdyeeAley~ekALei~ek~~G~d------hp~~----a~al~nLA~iy~~lGdyeeAle~lekALei~~k~l 289 (1124)
|..++++++|..|.--|+.||+++.+-.... ..++ ..+...|..||..+++.+.|+....+.+.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln---- 258 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN---- 258 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC----
Confidence 5566778888888888888888876522111 1111 3345678999999999999999988887654
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 290 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 290 G~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
|.+..-+...|.++..+.+|.+|...+--|.-++
T Consensus 259 ----P~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 259 ----PSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred ----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667778999999999999988776555444
No 363
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=80.11 E-value=22 Score=41.45 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhcC------------CCChhHHHHHHHHHHHHHHCCC------------------HHHHHH
Q 001206 227 QHTELALKYVKRALYLLHLTCG------------PSHPNTAATYINVAMMEEGLGN------------------VHVALR 276 (1124)
Q Consensus 227 GdyeeAley~ekALei~ek~~G------------~dhp~~a~al~nLA~iy~~lGd------------------yeeAle 276 (1124)
.....|..+|++|..+++.+.. +-.+..+.++..+.....+.-- --++..
T Consensus 135 ~~~k~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~Dl~~~~l~~l~~l~LAqAQe~~~~ka~~~~~~~~~liakLa~~~~~ 214 (345)
T cd09034 135 EDLKQAIKSLQKAAGYFEYLKEHVLPLPPDELPVDLTEAVLSALSLIMLAQAQECFLLKAEEDKKAKLSLLARLACEAAK 214 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence 3467788888887776543321 1133445555444333222111 125567
Q ss_pred HHHHHHHHHHHhcCC---C-------------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 277 YLHKALKCNQRLLGP---D-------------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 277 ~lekALei~~k~lG~---d-------------~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
+|++|++........ . +...+.+++.+|..+...+++.+|+.+++.|...+
T Consensus 215 ~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~ 281 (345)
T cd09034 215 YYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEANKIGEAIARLQAALELL 281 (345)
T ss_pred HHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 777777766432110 0 01123344445555555556666666666555543
No 364
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.06 E-value=43 Score=38.89 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=74.0
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 168 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 247 (1124)
Q Consensus 168 p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~ 247 (1124)
...+.+...||.+|-..++|..|...+.- +..-.-....+.......+..+|.+|...++..+|..|..++--+....
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~- 177 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES- 177 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc-
Confidence 34567788999999999999888765421 1110000001223356678899999999999999999999986554432
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001206 248 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 283 (1124)
Q Consensus 248 G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALe 283 (1124)
.+...........|.++-..++|-+|...|.+...
T Consensus 178 -~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 178 -SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222333344557788888888887777765544
No 365
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=80.05 E-value=9 Score=32.85 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 001206 298 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 343 (1124)
Q Consensus 298 ~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~ 343 (1124)
.+++.||..+.++|+|++|..+.+.++++ .|++........
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~-----eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI-----EPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----TTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCcHHHHHHHH
Confidence 46788999999999999999999999987 567665544443
No 366
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=79.72 E-value=45 Score=38.24 Aligned_cols=76 Identities=12% Similarity=0.112 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 001206 254 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 333 (1124)
Q Consensus 254 ~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~ 333 (1124)
...++..++..+...|+++.++..+++.+.+. +..-..|..|-..|...|+...|+..|++..+....-+|.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD--------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 35678889999999999999999998877653 4455678888999999999999999999999887777777
Q ss_pred CCHH
Q 001206 334 DDLR 337 (1124)
Q Consensus 334 dh~~ 337 (1124)
+-..
T Consensus 224 ~P~~ 227 (280)
T COG3629 224 DPAP 227 (280)
T ss_pred CccH
Confidence 6443
No 367
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=78.84 E-value=43 Score=44.63 Aligned_cols=63 Identities=11% Similarity=0.009 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH------HHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001206 176 LLAVVLYHTGDFNQATIYQQKA------LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRA 239 (1124)
Q Consensus 176 nLG~ly~~lGdydeAle~~~KA------LeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekA 239 (1124)
.-|..|...|+.++|+..|+.+ +.+..+.... .-.....-..|+.-+..++++-+|-+.+...
T Consensus 957 ~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~-~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 957 EAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEG-KDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 4455666667777776655443 3333322111 1112222244555555666665555544443
No 368
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=78.58 E-value=11 Score=45.04 Aligned_cols=71 Identities=18% Similarity=0.146 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 174 YSLLAVVLYHTGDFNQATIYQQKALDINE-RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 174 y~nLG~ly~~lGdydeAle~~~KALeI~e-r~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
+..|..++..+|||..|+..++-. ++-+ ..+....+-....++.+|.+|+.+++|.+|++.|...|-...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888999999999876432 2211 1122223345677899999999999999999999999876554
No 369
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.57 E-value=42 Score=47.71 Aligned_cols=110 Identities=15% Similarity=0.058 Sum_probs=81.8
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
....+.+|..+|.+.+..|+++.|..++-+|.+.. ...++...|..++..|+-..|+.++++.+.....-
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 56789999999999999999999999998887642 45678889999999999999999999999765432
Q ss_pred cC-C--------CChhHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHH
Q 001206 247 CG-P--------SHPNTAATYINVAMMEEGLGNVH--VALRYLHKALKCNQ 286 (1124)
Q Consensus 247 ~G-~--------dhp~~a~al~nLA~iy~~lGdye--eAle~lekALei~~ 286 (1124)
+. + +......+...++......++++ .-+.+|++|.++..
T Consensus 1736 ~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1736 LHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred ccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 11 1 11112234555666666666643 45678888887764
No 370
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=78.30 E-value=42 Score=39.77 Aligned_cols=116 Identities=8% Similarity=-0.012 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHhcC---------CCChhHHHHHHHHHHHHHHCCCH--
Q 001206 212 TMKSYGDLAVFYYRLQ---------HTELALKYVKRALYLLHLTCG---------PSHPNTAATYINVAMMEEGLGNV-- 271 (1124)
Q Consensus 212 ~a~ay~nLA~iy~~lG---------dyeeAley~ekALei~ek~~G---------~dhp~~a~al~nLA~iy~~lGdy-- 271 (1124)
.+.+++|+|.+|...+ .+++|..+|++|-..++.+.. .-++....++..|.....+.-=+
T Consensus 113 ka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e~~~~~~~~~Dl~~~~l~~L~~lmLAQAQEc~~~K 192 (361)
T cd09239 113 EASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLREHYPQVYGAVDMSSQLLSFNYSLMLAQAQECLLEK 192 (361)
T ss_pred HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665443 266788888887765543211 11334444444433222211111
Q ss_pred ---------------HHHHHHHHHHHHHHHHhcCC--------C-----------cHHHHHHHHHHHHHHHHcCChHHHH
Q 001206 272 ---------------HVALRYLHKALKCNQRLLGP--------D-----------HIQTAASYHAIAIALSLMEAYPLSV 317 (1124)
Q Consensus 272 ---------------eeAle~lekALei~~k~lG~--------d-----------~p~~A~a~~nLA~ly~~lGd~eeAl 317 (1124)
.++..+|++|++........ . +...+.+++..|......+++.+|+
T Consensus 193 ai~d~~k~sliAKLA~q~~~~Y~~a~~~l~~~~~~~~~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~~~~k~Ge~I 272 (361)
T cd09239 193 SLLDNRKSHITAKVSAQVVEYYKEALRALENWESNSKIILGKIQKEWRKLVQMKIAYYASIAHLHMGKQSEEQQKMGERV 272 (361)
T ss_pred HHHhCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 23457777777765431110 0 1122344555566666667777787
Q ss_pred HHHHHHHHHH
Q 001206 318 QHEQTTLQIL 327 (1124)
Q Consensus 318 e~lekALei~ 327 (1124)
.+++.|...+
T Consensus 273 a~L~~A~~~l 282 (361)
T cd09239 273 AYYQLANDKL 282 (361)
T ss_pred HHHHHHHHHH
Confidence 7777777644
No 371
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.22 E-value=1.3e+02 Score=35.18 Aligned_cols=107 Identities=14% Similarity=0.012 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 211 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP---SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~---dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
..+.+...||.+|-+.++|..|-..+.-. . ...|. +....+..+..+|.+|...++..+|..+..++--+...
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~---~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~ 176 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGI-P---LDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE 176 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcc-C---cccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc
Confidence 46778889999999999999987665432 1 11111 22335678899999999999999999999987655432
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001206 288 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 323 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekA 323 (1124)
. .+...........|+++-..++|-+|.+.|-+.
T Consensus 177 ~--~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 177 S--SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred c--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222222222334467777778887776655543
No 372
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=77.62 E-value=63 Score=39.44 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=21.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 001206 138 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIY 193 (1124)
Q Consensus 138 ~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~ 193 (1124)
....+++++++.++.... .+...+ | ..-...++..+..+|..+.|+.+
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~i-----~--~~~~~~i~~fL~~~G~~e~AL~~ 317 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPNI-----P--KDQGQSIARFLEKKGYPELALQF 317 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG---------HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHcCChhhhhhhhhhh-hhcccC-----C--hhHHHHHHHHHHHCCCHHHHHhh
Confidence 456688999877766311 111000 1 12355566666777777766654
No 373
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.49 E-value=79 Score=34.03 Aligned_cols=148 Identities=11% Similarity=-0.028 Sum_probs=98.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001206 136 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 215 (1124)
Q Consensus 136 G~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~a 215 (1124)
|..|++.+.-..+-+.|..+|++.. .+..++|+.-|.. .++..-..+| ..+
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA~-----------------------~~k~d~Alaaf~~----lektg~g~Yp--vLA 96 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLAQ-----------------------ENKTDDALAAFTD----LEKTGYGSYP--VLA 96 (221)
T ss_pred eeehhcccccccchHHHHHHHHHHH-----------------------cCCchHHHHHHHH----HHhcCCCcch--HHH
Confidence 3455666666667777777776643 2445556554433 2332222344 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 001206 216 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA--ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 293 (1124)
Q Consensus 216 y~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a--~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~ 293 (1124)
.+..|.+....|+...|..+|..+-.. ...|... .+...-|.++...|-|++-... .+.+-+...
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~~rd~ARlraa~lLvD~gsy~dV~sr-------vepLa~d~n 163 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQIGRDLARLRAAYLLVDNGSYDDVSSR-------VEPLAGDGN 163 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcchhhHHHHHHHHHHHhccccHHHHHHH-------hhhccCCCC
Confidence 677899999999999999999986542 1233332 2344556777788887764433 334445667
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 294 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 325 (1124)
Q Consensus 294 p~~A~a~~nLA~ly~~lGd~eeAle~lekALe 325 (1124)
+....+...||..-++.|++..|..+|.+...
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77888889999999999999999999986544
No 374
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=75.99 E-value=24 Score=39.07 Aligned_cols=62 Identities=24% Similarity=0.270 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001206 148 AVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 225 (1124)
Q Consensus 148 Al~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~ 225 (1124)
|+.+|.+|+.+ .|..+..|+.||.++...|+.-.|+-+|-+++.. ..|- ..+..||..++.+
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 78899999988 5788899999999999999999999999999854 2343 5677888888777
No 375
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=75.70 E-value=53 Score=39.23 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH--HHHhcCCHHHHHHHHH
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAV--VLYHTGDFNQATIYQQ 195 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~--ly~~lGdydeAle~~~ 195 (1124)
...+......++.++..++|..|..+|.+++... ..+........|..|.. .++..-++.+|.++++
T Consensus 127 ~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~---l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 127 NVEGNTEQGYARRAINAFDYLFAHARLETLLRRL---LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc---cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 3445556667778999999999999999988652 11222233445555554 4567788999999998
No 376
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=75.23 E-value=18 Score=40.02 Aligned_cols=62 Identities=26% Similarity=0.264 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001206 190 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 267 (1124)
Q Consensus 190 Ale~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~ 267 (1124)
|+.||++|+.+. |.....|+.||.++...|+.=.|+-+|-|++.. ..|. ..+..||..++.+
T Consensus 1 A~~~Y~~A~~l~--------P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLL--------PSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC--------CCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 688999999984 778899999999999999999999999999853 2443 5667788888777
No 377
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.67 E-value=93 Score=41.64 Aligned_cols=133 Identities=18% Similarity=0.102 Sum_probs=79.0
Q ss_pred cCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH------HhcCC----HHHHHH
Q 001206 123 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVL------YHTGD----FNQATI 192 (1124)
Q Consensus 123 ~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly------~~lGd----ydeAle 192 (1124)
.+.....-.-+.+|..|+..|.-.+|+.+|.+|+.-.. .. .++..+-.-. ...|+ -..|+.
T Consensus 914 wc~vlk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~g----e~-----~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lh 984 (1480)
T KOG4521|consen 914 WCRVLKPVIRFMLGIAYLGTGEPVKALNCFQSALSGFG----EG-----NALRKLVYFLLPKRFSVADGKTPSEELTALH 984 (1480)
T ss_pred hhhhhHHHHHHhhheeeecCCchHHHHHHHHHHhhccc----cH-----HHHHHHHHHhcCCCCchhcCCCCCchHHHHH
Confidence 44445555667789999999999999999999986421 11 1111111100 01121 112344
Q ss_pred HHHHHHHHHHH----------------hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 001206 193 YQQKALDINER----------------ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 256 (1124)
Q Consensus 193 ~~~KALeI~er----------------~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~ 256 (1124)
||.+++.++++ .++.+.|..+..+.++=..+..+|.+-+|.+.+-+ .++....-.
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~---------npdserrrd 1055 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR---------NPDSERRRD 1055 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc---------CCcHHHHHH
Confidence 55555544443 24667777888888888888888888877654432 223333455
Q ss_pred HHHHHHHHHHHCCCHHH
Q 001206 257 TYINVAMMEEGLGNVHV 273 (1124)
Q Consensus 257 al~nLA~iy~~lGdyee 273 (1124)
++..|-.+++..|+++.
T Consensus 1056 cLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1056 CLRQLVIVLFECGELEA 1072 (1480)
T ss_pred HHHHHHHHHHhccchHH
Confidence 66777777777777653
No 378
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=74.37 E-value=1.8e+02 Score=34.37 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 001206 296 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 331 (1124)
Q Consensus 296 ~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~l 331 (1124)
.+.+++.+|......+++.+|+.+++.|...++...
T Consensus 252 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~ 287 (346)
T cd09247 252 EARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKL 287 (346)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 456677788888888999999999999998766544
No 379
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=74.28 E-value=22 Score=43.11 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=18.9
Q ss_pred cccccccccccccCCCCCcceEEEEe
Q 001206 1074 RKQTLRIPISLLSRPYGSQSFKVIYN 1099 (1124)
Q Consensus 1074 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 1099 (1124)
|--.||-=.-|+---|-||-|-|.|-
T Consensus 576 RcWDlregrqlqqhdF~SQIfSLg~c 601 (705)
T KOG0639|consen 576 RCWDLREGRQLQQHDFSSQIFSLGYC 601 (705)
T ss_pred eehhhhhhhhhhhhhhhhhheecccC
Confidence 44455666667788888999988873
No 380
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=74.15 E-value=2e+02 Score=34.39 Aligned_cols=140 Identities=14% Similarity=0.094 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCChhH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001206 171 AGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHPDT-----MKSYGDLAVFYYRLQHTELALKYVKRALY 241 (1124)
Q Consensus 171 A~ay~nLG~ly~~l----GdydeAle~~~KALeI~er~lg~D~p~~-----a~ay~nLA~iy~~lGdyeeAley~ekALe 241 (1124)
..+...++.+|..+ .+.+.-+.++++-+++++.++..-++.. ...++.||.+|..+=+. -++
T Consensus 171 v~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~~~~rql~fElae~~~~i~dl---------k~~ 241 (371)
T PF12309_consen 171 VQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYYLNLCRQLWFELAEIYSEIMDL---------KLE 241 (371)
T ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH
Confidence 34444455544433 6777888888988888887765544432 12233344444332111 011
Q ss_pred HHHH---hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC---------CcHHHHHHHHHHHHHHHH
Q 001206 242 LLHL---TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP---------DHIQTAASYHAIAIALSL 309 (1124)
Q Consensus 242 i~ek---~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~---------d~p~~A~a~~nLA~ly~~ 309 (1124)
.... ......+..+.-.+.+ ...|+.+|+.-++.+....+. .......+++.+|++|.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~kin~l---------~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K 312 (371)
T PF12309_consen 242 KLDEPQNDNEPPDDHALKKINQL---------CSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSK 312 (371)
T ss_pred HhhhhcccCCCCChHHHHHHHHH---------HHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHcc
Confidence 1110 0111112221112222 347888888888877532100 112346788999999987
Q ss_pred c--CC-------hHHHHHHHHHHHHHHH
Q 001206 310 M--EA-------YPLSVQHEQTTLQILR 328 (1124)
Q Consensus 310 l--Gd-------~eeAle~lekALei~~ 328 (1124)
. ++ +..++.+|+...+.+.
T Consensus 313 ~~~~~~~~~~~~l~~sl~~y~~vv~y~~ 340 (371)
T PF12309_consen 313 LITSDPKEQLENLEKSLEYYKWVVDYCE 340 (371)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 33 4455555555555443
No 381
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.12 E-value=30 Score=36.38 Aligned_cols=88 Identities=15% Similarity=0.040 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 169 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 248 (1124)
Q Consensus 169 ~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G 248 (1124)
.....+..+..+-...++.+++..++.- +... .|.....-..-|.++...|+|.+|+.+|+.+.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~A-LrvL-------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------- 72 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDA-LRVL-------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE------- 72 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHH-HHHh-------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc-------
Confidence 3455666777777788888888877754 3332 466667777889999999999999999998644
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHH
Q 001206 249 PSHPNTAATYINVAMMEEGLGNVH 272 (1124)
Q Consensus 249 ~dhp~~a~al~nLA~iy~~lGdye 272 (1124)
..+....+.-.++.|+..+|+.+
T Consensus 73 -~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 -RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred -cCCCChHHHHHHHHHHHHcCChH
Confidence 23444444455788888888754
No 382
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=73.79 E-value=31 Score=38.72 Aligned_cols=57 Identities=26% Similarity=0.308 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 001206 187 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYLL 243 (1124)
Q Consensus 187 ydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~-lGdyeeAley~ekALei~ 243 (1124)
.+.|...|++|++++...+.+.||-......|.+.+|+. +++.++|.+..++|+.-.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 458899999999998877788888888888888888776 488899998888777643
No 383
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.42 E-value=70 Score=41.37 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKL 159 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~ 159 (1124)
..+......|..++.+|++++|..+|-+++...
T Consensus 366 ~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 366 TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 345566777889999999999999999988753
No 384
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=73.37 E-value=12 Score=42.04 Aligned_cols=70 Identities=29% Similarity=0.457 Sum_probs=37.9
Q ss_pred cCCCCCCCCcccCCCCcccccCCCCccccCCCCCCCCCCCCCC---CCCCCCCCCCccCCccCCCCCCCCCCCCCCCCcc
Q 001206 836 TLPPGPGAVTAVAPWPVNMTLHPRPATVLPTVNPMCSSPHQPY---PSPPSTPNMMQPLPFMYPPYTQPQGVPTSTFPVT 912 (1124)
Q Consensus 836 ~~~~~~~~~~~~~~~p~n~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~ 912 (1124)
+-| |...+||+.||| +|+.|||-+-.|= -|=| +||.-- |+-+.+|||=.+--| -|-.+.-.+|+.++|+.
T Consensus 203 ~RP-G~~~~PgmtprP-G~~~~PgmtP~mt--RPG~-~p~Pg~tsrPg~~~~Pgmt~RPg~--~p~~~~~~~P~~~~pr~ 275 (279)
T PF07271_consen 203 QRP-GFTPHPGMTPRP-GMTPHPGMTPNMT--RPGF-TPHPGMTSRPGMPMRPGMTPRPGF--TPHPGMTSRPGMTMPRP 275 (279)
T ss_pred CCC-CCCCCCCCCCCC-CCCCCCCCCCCCC--CCCC-CCCCCCcCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
Confidence 445 899999999999 7999988321111 1111 111111 333455666444444 33344445566666653
No 385
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=73.34 E-value=7.4 Score=44.53 Aligned_cols=66 Identities=23% Similarity=0.161 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 200 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI 200 (1124)
..|...+..|.-....|+.++|..+|+.|+.+ .|...+++..+|.......+.-+|-.+|-+||.+
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 34666677777788899999999999999988 4666778999999999999999999999999987
No 386
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.18 E-value=19 Score=30.85 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 256 ATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 256 ~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
..++.||..+.++|+|++|..+.+.+|++-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 357889999999999999999999999874
No 387
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=72.86 E-value=2.6e+02 Score=35.16 Aligned_cols=173 Identities=14% Similarity=-0.027 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
+-..+..........|+++...-+|++++--+.. .-..|...+......|+..-|...++.+.++..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~--------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~----- 362 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL--------YDEFWIKYARWMESSGDVSLANNVLARACKIHV----- 362 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh--------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-----
Confidence 3344444455567789999999999998865432 234677777777778999999998988888863
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
+....+...-|.+.-..|++..|...|++...- .|....+-..-+.+...+|+.+.+.. +...+...
T Consensus 363 --k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~-- 429 (577)
T KOG1258|consen 363 --KKTPIIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWERRKGNLEDANY-KNELYSSI-- 429 (577)
T ss_pred --CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHh--
Confidence 233444555677778889999999999887653 24445555555667778888888774 22222222
Q ss_pred hcCCCcH-HHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHH
Q 001206 288 LLGPDHI-QTAASYHAIAIALS-LMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 288 ~lG~d~p-~~A~a~~nLA~ly~-~lGd~eeAle~lekALei 326 (1124)
..|..+. .....+...++... -.++-+.|...+.+++++
T Consensus 430 ~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~ 470 (577)
T KOG1258|consen 430 YEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI 470 (577)
T ss_pred cccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 1122222 23445566666554 457888888888888776
No 388
>PRK10941 hypothetical protein; Provisional
Probab=72.85 E-value=23 Score=40.27 Aligned_cols=82 Identities=10% Similarity=0.076 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 001206 254 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 333 (1124)
Q Consensus 254 ~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~ 333 (1124)
....+.||=.+|...++++.|+.+.+..+.+. ++++ .-+...|.+|.++|.+..|..-++..++. -+
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-----P~dp---~e~RDRGll~~qL~c~~~A~~DL~~fl~~-----~P 246 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFD-----PEDP---YEIRDRGLIYAQLDCEHVALSDLSYFVEQ-----CP 246 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHHh-----CC
Confidence 46678899999999999999999999998875 5554 44556799999999999999988877765 36
Q ss_pred CCHHHHHHHHHHHHH
Q 001206 334 DDLRTQDAAAWLEYF 348 (1124)
Q Consensus 334 dh~~t~~a~~~La~l 348 (1124)
+++........+..+
T Consensus 247 ~dp~a~~ik~ql~~l 261 (269)
T PRK10941 247 EDPISEMIRAQIHSI 261 (269)
T ss_pred CchhHHHHHHHHHHH
Confidence 777666665555544
No 389
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=72.68 E-value=2.6e+02 Score=35.13 Aligned_cols=129 Identities=14% Similarity=-0.031 Sum_probs=90.7
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
.......|..........|+++....+|++++.-+-. .-..+...+......|+.+-|...+.++.++.
T Consensus 293 ~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~--------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~--- 361 (577)
T KOG1258|consen 293 DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL--------YDEFWIKYARWMESSGDVSLANNVLARACKIH--- 361 (577)
T ss_pred cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh--------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc---
Confidence 3344556666667777889999999999998876532 33456677777777899999998888888874
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q 001206 247 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 318 (1124)
Q Consensus 247 ~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle 318 (1124)
++....+...-|.+....|++..|...|++...-+ +....+-..-+.+...+|+.+.+..
T Consensus 362 ----~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 362 ----VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred ----CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcchhhhhH
Confidence 33344555566888889999999999999877643 2233333333455566777777764
No 390
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=72.32 E-value=1.1e+02 Score=36.05 Aligned_cols=33 Identities=9% Similarity=0.158 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 001206 297 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 329 (1124)
Q Consensus 297 A~a~~nLA~ly~~lGd~eeAle~lekALei~~k 329 (1124)
+.+++..|..+...+++-+|+.+++.|...++.
T Consensus 255 a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~ 287 (346)
T cd09240 255 ALAEYHQSLVAKAQKKFGEEIARLQHALELIKT 287 (346)
T ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 455566666666777777888877777765443
No 391
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=72.13 E-value=8.4 Score=48.59 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCCccCCCCCCCCccccc
Q 001206 920 HFSWQCNGNSNVPEFIPGPFLPGYHPMEF 948 (1124)
Q Consensus 920 ~~~~~~~~~~~~~~f~p~~~~~~~~~~~~ 948 (1124)
.|.|--+ +| .|.-=-.+|.+|.-=-|
T Consensus 628 r~nW~kI-~p--~d~s~~cFWvkv~Edk~ 653 (1102)
T KOG1924|consen 628 RFNWSKI-VP--RDLSENCFWVKVNEDKL 653 (1102)
T ss_pred cCCcccc-Cc--cccCccceeeecchhhc
Confidence 4568542 22 23333578999975433
No 392
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=71.33 E-value=55 Score=38.15 Aligned_cols=18 Identities=39% Similarity=0.217 Sum_probs=11.2
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 001206 186 DFNQATIYQQKALDINER 203 (1124)
Q Consensus 186 dydeAle~~~KALeI~er 203 (1124)
....|..+|++|--+++-
T Consensus 136 ~~k~A~~~fq~AAG~F~~ 153 (345)
T cd09034 136 DLKQAIKSLQKAAGYFEY 153 (345)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356677777777665543
No 393
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=69.63 E-value=6.9 Score=46.84 Aligned_cols=74 Identities=20% Similarity=0.001 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 215 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 215 ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
++..|..++.-+|+|..|++.++..---.+.++..-..-...+++.+|-+|..+++|.+|++.|..+|-...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567788999999999998876531111112222234457789999999999999999999999999876554
No 394
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=69.57 E-value=55 Score=40.63 Aligned_cols=72 Identities=18% Similarity=0.092 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001206 169 MTAGAYSLLAVVLYHT--GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 243 (1124)
Q Consensus 169 ~~A~ay~nLG~ly~~l--GdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ 243 (1124)
....++.+||.+--.. ..-..++.+|.+|+...+..++..| ..-|..+|-.|++.++|.+|+.++-.|-..+
T Consensus 275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi 348 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVI 348 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888775432 3346789999999999999887655 4567889999999999999999888876654
No 395
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=69.50 E-value=18 Score=44.25 Aligned_cols=97 Identities=18% Similarity=0.041 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHH
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---GDFNQATIYQQKALDINER 203 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~l---GdydeAle~~~KALeI~er 203 (1124)
..++.++..|.-.+..+.+..|+..|.+++.. .+....+|.+.|.+++.. |+.-.|+.-+..|+.+
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--- 440 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--- 440 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC---
Confidence 34455555565556666777888888888765 355667888888888765 4555566666666554
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001206 204 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRA 239 (1124)
Q Consensus 204 ~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekA 239 (1124)
++....+++.|+.++..++++.+|+.+...+
T Consensus 441 -----n~s~~kah~~la~aL~el~r~~eal~~~~al 471 (758)
T KOG1310|consen 441 -----NPSIQKAHFRLARALNELTRYLEALSCHWAL 471 (758)
T ss_pred -----ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHH
Confidence 5677889999999999999999999877654
No 396
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=69.33 E-value=3.2e+02 Score=34.80 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=13.9
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 001206 137 KTALDKGKLEDAVTYGTK 154 (1124)
Q Consensus 137 ~~yl~qGdyeeAl~~f~k 154 (1124)
.+++-.|+|+.|+.++.+
T Consensus 266 ~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHh
Confidence 456678999999998877
No 397
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.95 E-value=6.5 Score=28.29 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 001206 214 KSYGDLAVFYYRLQHTELALKYVKR 238 (1124)
Q Consensus 214 ~ay~nLA~iy~~lGdyeeAley~ek 238 (1124)
.++.+||.++..+|++++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3578899999999999999998763
No 398
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=68.68 E-value=39 Score=35.22 Aligned_cols=92 Identities=20% Similarity=0.088 Sum_probs=66.8
Q ss_pred cCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001206 123 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 202 (1124)
Q Consensus 123 ~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~e 202 (1124)
.|.......+.+.....+..++.+++..++. ++.++ .|.....-..-|.++...|+|.+|+..++....-
T Consensus 4 qCs~~iv~gLi~~~~~aL~~~d~~D~e~lLd-ALrvL-------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~-- 73 (153)
T TIGR02561 4 QCSNRLLGGLIEVLMYALRSADPYDAQAMLD-ALRVL-------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS-- 73 (153)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHh-------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc--
Confidence 4555566777777777888999999887765 44443 5666777788899999999999999999876542
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCCHH
Q 001206 203 RELGLDHPDTMKSYGDLAVFYYRLQHTE 230 (1124)
Q Consensus 203 r~lg~D~p~~a~ay~nLA~iy~~lGdye 230 (1124)
.+....+...++.|++.+|+.+
T Consensus 74 ------~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 74 ------AGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred ------CCCchHHHHHHHHHHHhcCChH
Confidence 2223444555788888888763
No 399
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=68.45 E-value=1.1e+02 Score=36.79 Aligned_cols=59 Identities=19% Similarity=0.049 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHHHHHcCCHHHHHHHHH
Q 001206 176 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL--AVFYYRLQHTELALKYVK 237 (1124)
Q Consensus 176 nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nL--A~iy~~lGdyeeAley~e 237 (1124)
.++..++..++|..|...|..++.. .+..+.......|..| |..++..-++++|.++++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r---~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRR---LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc---ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 3555778899999999999988754 2222222334455555 455567788899999998
No 400
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.24 E-value=50 Score=37.99 Aligned_cols=75 Identities=24% Similarity=0.265 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
...+...+..|...|.+.+|+++.++++.+ ++..-..+..|-.+|..+||--.|...|++--..+++-+|-+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 345566688899999999999999999977 677777888888999999999999999999888888877765
Q ss_pred Chh
Q 001206 209 HPD 211 (1124)
Q Consensus 209 ~p~ 211 (1124)
-.+
T Consensus 351 vdd 353 (361)
T COG3947 351 VDD 353 (361)
T ss_pred cch
Confidence 443
No 401
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=67.34 E-value=1.2e+02 Score=35.76 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 001206 296 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 330 (1124)
Q Consensus 296 ~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~ 330 (1124)
.+.+++..|......+++.+|+.+++.|+..+.+.
T Consensus 236 ~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~a 270 (355)
T cd09241 236 KAAAHYRMALVALEKSKYGEEVARLRVALAACKEA 270 (355)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45667777777777788888999988888765443
No 402
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=67.16 E-value=25 Score=40.72 Aligned_cols=33 Identities=33% Similarity=0.527 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccCCccCCC
Q 001206 865 PTVNPMCSSPHQPYPSPPSTPNMMQPLPFMYPP 897 (1124)
Q Consensus 865 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~p 897 (1124)
|.-.||-.|||-+-|+|-..|.-.|==||.+||
T Consensus 290 ppRP~m~l~phl~gppPga~pPaph~NpaffpP 322 (498)
T KOG4849|consen 290 PPRPMMQLSPHLMGPPPGAGPPAPHNNPAFFPP 322 (498)
T ss_pred CCCcccccCcccCCCCCCCCCCCcccCcccCCC
Confidence 445666677777666554444333344555566
No 403
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.94 E-value=2.4e+02 Score=32.49 Aligned_cols=135 Identities=16% Similarity=0.079 Sum_probs=78.3
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 001206 140 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 219 (1124)
Q Consensus 140 l~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nL 219 (1124)
+..|++=+|.+.|+..+..+... ..+.......+.-+.+++..++..-|..+.-..++.+++. +..+......||
T Consensus 17 ~~~~d~Yeahqm~RTl~fR~~~~--K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka---~~ad~~~~~anl 91 (312)
T KOG3024|consen 17 IELGDYYEAHQMYRTLVFRYTRQ--KAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKA---EVADSLLKVANL 91 (312)
T ss_pred cccccHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHH---HhhHhHHHHHHH
Confidence 34556666666666655444333 2344444555555666677777666666666666555542 111122223566
Q ss_pred HHHHHHcCCHHHHHH-HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001206 220 AVFYYRLQHTELALK-YVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 280 (1124)
Q Consensus 220 A~iy~~lGdyeeAle-y~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lek 280 (1124)
+.+....+.-+..+. +.+++++ |....|.........+..||..+...+++.+|..+|-.
T Consensus 92 ~~ll~e~~~~eper~~~v~raik-WS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll 152 (312)
T KOG3024|consen 92 AELLGEADPSEPERKTFVRRAIK-WSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLL 152 (312)
T ss_pred HHHHhhcCCCccHHHHHHHHHHH-HHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhh
Confidence 666666665555544 4455555 44433332233345667789999999999999988854
No 404
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=66.28 E-value=41 Score=34.64 Aligned_cols=70 Identities=29% Similarity=0.254 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 169 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP-DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 169 ~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p-~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
-...+.+++|+++....+-++ .++.+.+++.++...+| ......+.||.-++++++|++|+.|++..|+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~d----v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTED----VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHH----HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 345678889998887665433 34455555555432333 34567788999999999999999999988874
No 405
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=65.88 E-value=38 Score=32.05 Aligned_cols=33 Identities=21% Similarity=0.139 Sum_probs=27.2
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 241 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALe 241 (1124)
+|+...+.+.+|..+...|++++|++.+-.++.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566678999999999999999999998877665
No 406
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=65.42 E-value=7 Score=28.12 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 001206 172 GAYSLLAVVLYHTGDFNQATIYQQ 195 (1124)
Q Consensus 172 ~ay~nLG~ly~~lGdydeAle~~~ 195 (1124)
.++..||.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467899999999999999998876
No 407
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=64.96 E-value=2.5e+02 Score=32.59 Aligned_cols=164 Identities=13% Similarity=0.050 Sum_probs=98.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 001206 140 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 219 (1124)
Q Consensus 140 l~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nL 219 (1124)
+.++++.+.++.+++.+.. .+......+..+.++..+| ++.+....+..+..+-..+ |. |
T Consensus 110 ~~~~~~~~Ll~~~E~sl~~--------~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~Rl----P~-------L 169 (301)
T TIGR03362 110 LAQADWAALLQRVEQSLSL--------APFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERL----PG-------L 169 (301)
T ss_pred HhCCCHHHHHHHHHHHHHh--------CchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhC----cC-------h
Confidence 3677877777777777654 5778888889999999999 5666666666555543321 21 2
Q ss_pred HHHHHHcCCH---HHHHHHHHHHHHHHH-------HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 001206 220 AVFYYRLQHT---ELALKYVKRALYLLH-------LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 289 (1124)
Q Consensus 220 A~iy~~lGdy---eeAley~ekALei~e-------k~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~l 289 (1124)
-.+.|..|-. ++...++.....-.. ...+.. ........-+..+...+.++.|+.+++..+...
T Consensus 170 ~~L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~---- 243 (301)
T TIGR03362 170 LELKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEE--SDWEELREEARALAAEGGLEAALQRLQQRLAQA---- 243 (301)
T ss_pred hhcccCCCCCCCCHHHHHHHHhcccccccccccccccCccc--ccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC----
Confidence 2222333322 233333322110000 000000 112223344677788889999999988765432
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 001206 290 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 330 (1124)
Q Consensus 290 G~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~ 330 (1124)
............++.++...|.++.|..+|++..+..+..
T Consensus 244 -~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~~~ 283 (301)
T TIGR03362 244 -REPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQIQQL 283 (301)
T ss_pred -CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 2233455667788999999999999999999887766543
No 408
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=64.73 E-value=1e+02 Score=35.36 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 169 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 248 (1124)
Q Consensus 169 ~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G 248 (1124)
....++..|+..+...|+++.++..+++.+.+ +|..-.+|..|=..|...|+...|+..|++.-....+-.|
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 45678999999999999999999999888775 4555667888888999999999999999998887666566
Q ss_pred CCCh
Q 001206 249 PSHP 252 (1124)
Q Consensus 249 ~dhp 252 (1124)
.+..
T Consensus 223 i~P~ 226 (280)
T COG3629 223 IDPA 226 (280)
T ss_pred CCcc
Confidence 5544
No 409
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.54 E-value=2.6e+02 Score=33.13 Aligned_cols=70 Identities=10% Similarity=-0.023 Sum_probs=48.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-------------------------cCCCcHHHHHHHHHHHHHHHHcCCh
Q 001206 259 INVAMMEEGLGNVHVALRYLHKALKCNQRL-------------------------LGPDHIQTAASYHAIAIALSLMEAY 313 (1124)
Q Consensus 259 ~nLA~iy~~lGdyeeAle~lekALei~~k~-------------------------lG~d~p~~A~a~~nLA~ly~~lGd~ 313 (1124)
.+-|.++...++|.++...|..|-...+.. +++..-....+.+.+|.-|...+|+
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~ 141 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDS 141 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcch
Confidence 345888888888888887777666554332 1122223445566788889999999
Q ss_pred HHHHHHHHHHHHHHH
Q 001206 314 PLSVQHEQTTLQILR 328 (1124)
Q Consensus 314 eeAle~lekALei~~ 328 (1124)
+.|+--|.++.+..+
T Consensus 142 ~~ArVEfnRan~rQ~ 156 (449)
T COG3014 142 AKARVEFNRANERQR 156 (449)
T ss_pred hhhHHHHHHHHHHHH
Confidence 999988888876543
No 410
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=63.53 E-value=61 Score=40.26 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 001206 254 TAATYINVAMMEEGL--GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 329 (1124)
Q Consensus 254 ~a~al~nLA~iy~~l--GdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k 329 (1124)
...++.+||.+.... ..-..++++|++|+...+..++..|. .-|..+|..|++.++|.+|+.++-+|-+..+.
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777765532 33567899999999999988876553 44666899999999999999999888776544
No 411
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.48 E-value=1.6e+02 Score=38.45 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 176 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 176 nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
..-.+|...|+|++|+++.+..-+. .-..+..-|..|+..++|..|.++|-+.+.-+++
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~p~~-----------le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEE 421 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTRPDA-----------LETVLLKQADFLFQDKEYLRAAEIYAETLSSFEE 421 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCCHHH-----------HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Confidence 3456888999999888876544221 2235667888999999999999988887655443
No 412
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=63.46 E-value=2.9e+02 Score=34.58 Aligned_cols=72 Identities=14% Similarity=0.060 Sum_probs=56.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 001206 258 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLG----PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 329 (1124)
Q Consensus 258 l~nLA~iy~~lGdyeeAle~lekALei~~k~lG----~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k 329 (1124)
.++++.-+...|.-.++++++.-+....+...- ..-+..+..|..+..+|.+.|.+.+|..+.++++.-..+
T Consensus 154 IY~ICr~Lm~~G~s~~vle~L~wa~~cmEssv~L~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ki~e 229 (542)
T PF14858_consen 154 IYTICRHLMTAGHSAKVLEYLLWASICMESSVPLLTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALAKIDE 229 (542)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHhcchhhhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 457788888999999999999887666544311 123455678889999999999999999999999876544
No 413
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=63.44 E-value=5.3e+02 Score=35.11 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=15.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 262 AMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 262 A~iy~~lGdyeeAle~lekALei~ 285 (1124)
+.++...|+...|..+..+|.+..
T Consensus 1532 ~IL~~T~~di~ra~~L~s~A~~a~ 1555 (1758)
T KOG0994|consen 1532 AILSRTKGDIARAENLQSEAERAR 1555 (1758)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHH
Confidence 344555677777777776666544
No 414
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.37 E-value=69 Score=40.04 Aligned_cols=48 Identities=19% Similarity=0.048 Sum_probs=33.8
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 182 YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 182 ~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
.++|+++.|.++..++-. ..-|..||.+....+++..|.+||.+|..+
T Consensus 648 l~lgrl~iA~~la~e~~s-------------~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEANS-------------EVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhcCcHHHHHHHHHhhcc-------------hHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 345666666555444321 234677899999999999999999998764
No 415
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=63.10 E-value=56 Score=33.69 Aligned_cols=70 Identities=23% Similarity=0.233 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 212 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP-NTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 212 ~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp-~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
...+.+++|+++.+..+.++ .++.+.+++.++...|| ..-..++.||.-+.++++|++|+.|.+..|+.-
T Consensus 31 s~~s~f~lAwaLV~S~~~~d----v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTED----VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHHHHHHHHcccchHH----HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 46678899999987766532 33444444444432333 345677889999999999999999999888753
No 416
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.70 E-value=19 Score=42.23 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q 001206 255 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 318 (1124)
Q Consensus 255 a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle 318 (1124)
+.-+...|...+.++++++|...|..|..++.+.+|..|..+...++..|..++..+++..++-
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456678999999999999999999999999999999999999999999999998887776544
No 417
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.65 E-value=3.9e+02 Score=33.36 Aligned_cols=132 Identities=11% Similarity=-0.092 Sum_probs=79.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 001206 179 VVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATY 258 (1124)
Q Consensus 179 ~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al 258 (1124)
..+...+..+. +...+++...+.. .|.-+....+-|.++...|+.+.|+.+++.++....+ .-...++
T Consensus 239 ~~~~~~p~~d~--~~~~~~Ll~~~~~----~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~ 306 (546)
T KOG3783|consen 239 SFVLGTPNPDG--EECEKALKKYRKR----YPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMV 306 (546)
T ss_pred HHHcCCCCccH--HHHHHHhHHHHHh----CCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHH
Confidence 33344444444 3344444444332 3444556677888889999999999999988873222 2235677
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH--------HcCChHHHHHHHHHHHHHHHH
Q 001206 259 INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS--------LMEAYPLSVQHEQTTLQILRA 329 (1124)
Q Consensus 259 ~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~--------~lGd~eeAle~lekALei~~k 329 (1124)
+.+|.++..+.+|..|..++....+..+ ...+..-+..|.+|. ..|+-+.|..+++....+...
T Consensus 307 fE~aw~~v~~~~~~~aad~~~~L~desd-------WS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~ 378 (546)
T KOG3783|consen 307 FERAWLSVGQHQYSRAADSFDLLRDESD-------WSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLAN 378 (546)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhhh-------hhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence 8889999999999999999888776541 112221222333332 234666666666655555443
No 418
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=62.39 E-value=1.9e+02 Score=34.42 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 001206 296 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 328 (1124)
Q Consensus 296 ~A~a~~nLA~ly~~lGd~eeAle~lekALei~~ 328 (1124)
.+.+|+..|..+...+++.+|+.+++.|...++
T Consensus 247 ~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k 279 (353)
T cd09243 247 LAYAYCYHGETLLAKDKCGEAIRSLQESEKLYN 279 (353)
T ss_pred HHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHH
Confidence 455566666666667777777777777766543
No 419
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=60.39 E-value=65 Score=38.21 Aligned_cols=15 Identities=20% Similarity=-0.232 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 001206 187 FNQATIYQQKALDIN 201 (1124)
Q Consensus 187 ydeAle~~~KALeI~ 201 (1124)
+..|..+|++|--++
T Consensus 139 lK~A~~~fq~AAG~F 153 (361)
T cd09239 139 MKVACTHFQCAAWAF 153 (361)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666665444
No 420
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=60.28 E-value=2.1e+02 Score=33.96 Aligned_cols=38 Identities=11% Similarity=-0.081 Sum_probs=23.4
Q ss_pred cCChHHHHHHHHHHHHHHH-------c-----CCHHHHHHHHHHHHHHHH
Q 001206 123 ACSSADGRQLLESSKTALD-------K-----GKLEDAVTYGTKALAKLV 160 (1124)
Q Consensus 123 ~~~s~~Ar~Ll~lG~~yl~-------q-----GdyeeAl~~f~kAL~i~e 160 (1124)
......+-.++++|..|.. . ....+|..+|++|-.++.
T Consensus 103 sl~fEk~sVLfNigal~s~~As~~~~~~~~s~e~~K~A~~~fq~AAG~F~ 152 (353)
T cd09243 103 DAIFELASMLFNVALWYTKHASKLAGKEDITEDEAKDVHKSLRTAAGIFQ 152 (353)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3344556667777776632 1 226677788888876654
No 421
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.94 E-value=3.6e+02 Score=32.00 Aligned_cols=69 Identities=10% Similarity=-0.102 Sum_probs=43.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-------------------------cCCCChhHHHHHHHHHHHHHHCCCH
Q 001206 217 GDLAVFYYRLQHTELALKYVKRALYLLHLT-------------------------CGPSHPNTAATYINVAMMEEGLGNV 271 (1124)
Q Consensus 217 ~nLA~iy~~lGdyeeAley~ekALei~ek~-------------------------~G~dhp~~a~al~nLA~iy~~lGdy 271 (1124)
.+-|.+++..++|.++...|..+-..++.. ++...-+...+.+.+|.-|....++
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~ 141 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDS 141 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcch
Confidence 455888888888888887776665544321 1111222344455567777777777
Q ss_pred HHHHHHHHHHHHHH
Q 001206 272 HVALRYLHKALKCN 285 (1124)
Q Consensus 272 eeAle~lekALei~ 285 (1124)
+.|+--|++|....
T Consensus 142 ~~ArVEfnRan~rQ 155 (449)
T COG3014 142 AKARVEFNRANERQ 155 (449)
T ss_pred hhhHHHHHHHHHHH
Confidence 77777777776654
No 422
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.64 E-value=1.5e+02 Score=34.23 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=37.5
Q ss_pred HHHHHHHHCCCHHH-HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001206 260 NVAMMEEGLGNVHV-ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 322 (1124)
Q Consensus 260 nLA~iy~~lGdyee-Ale~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lek 322 (1124)
||+.+....+.-+. =..+.+++++...+. |.........+..||..+..-++..+|..||-.
T Consensus 90 nl~~ll~e~~~~eper~~~v~raikWS~~~-~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll 152 (312)
T KOG3024|consen 90 NLAELLGEADPSEPERKTFVRRAIKWSKEF-GEGKYGHPELHALLADKLWTEDNVEEARRHFLL 152 (312)
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhh
Confidence 44444444443333 335566667666543 222223346677889999988899999888753
No 423
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=59.49 E-value=88 Score=29.60 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=27.3
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 200 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI 200 (1124)
+|.-..+.+.||..+...|++++|++.+-..+..
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5667789999999999999999999988766553
No 424
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.84 E-value=4.5e+02 Score=32.80 Aligned_cols=33 Identities=15% Similarity=-0.027 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 381 LLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 381 ll~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
.+++|+..|..+++|.+|+..|.++........
T Consensus 424 RC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~ 456 (593)
T KOG2460|consen 424 RCFYIAVSYQAKKKYSEALALYVRAYSYLQEVN 456 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999988776654
No 425
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=58.80 E-value=67 Score=37.01 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 001206 255 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 334 (1124)
Q Consensus 255 a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~d 334 (1124)
...+...+..|...|.+.+|+++.++++.+. +..-..+..|-.+|..+||--.|..+|++--+.+++.+|-+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltld--------pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLD--------PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--------hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 3445566888999999999999999999864 44556677888899999999999999998888887777765
Q ss_pred C
Q 001206 335 D 335 (1124)
Q Consensus 335 h 335 (1124)
-
T Consensus 351 v 351 (361)
T COG3947 351 V 351 (361)
T ss_pred c
Confidence 3
No 426
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=58.61 E-value=3.1e+02 Score=30.94 Aligned_cols=150 Identities=11% Similarity=-0.007 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHhcCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFN-QATIYQQKALDINERELGL 207 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdyd-eAle~~~KALeI~er~lg~ 207 (1124)
.+.++.-+..++..|++..|.++..-.++.+.+.... .......+|+.++.....-+ +-..+.++|+.-. + .+.
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~---~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~-~~~ 84 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDP---VDEESIARLIELISLFPPEEPERKKFIKAAIKWS-K-FGS 84 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-H-TSS
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-c-cCC
Confidence 4556677788899999999999998888888774222 22234467777777665433 4556777888776 3 234
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRA-----------LYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 276 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekA-----------Lei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle 276 (1124)
........+..+|..|++.+++.+|..+|-.+ +..+... +.. .+........-..|...++...|..
T Consensus 85 ~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~-~~~-~e~dlfi~RaVL~yL~l~n~~~A~~ 162 (260)
T PF04190_consen 85 YKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK-GYP-SEADLFIARAVLQYLCLGNLRDANE 162 (260)
T ss_dssp -TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-TSS---HHHHHHHHHHHHHHTTBHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-cCC-cchhHHHHHHHHHHHHhcCHHHHHH
Confidence 33445678889999999999999999988432 1122222 211 1222223334455778899999998
Q ss_pred HHHHHHHHH
Q 001206 277 YLHKALKCN 285 (1124)
Q Consensus 277 ~lekALei~ 285 (1124)
.+..-++..
T Consensus 163 ~~~~f~~~~ 171 (260)
T PF04190_consen 163 LFDTFTSKL 171 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766653
No 427
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=58.09 E-value=3.1e+02 Score=30.63 Aligned_cols=60 Identities=20% Similarity=0.188 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHh
Q 001206 229 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 229 yeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~-lGdyeeAle~lekALei~~k~ 288 (1124)
.++|...|++|+++....+.+.||.......|.+..|+. +|+.++|+++.++|++-....
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 378999999999999998889999999888888887754 899999999999998876443
No 428
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=57.90 E-value=1.9e+02 Score=34.12 Aligned_cols=39 Identities=10% Similarity=-0.071 Sum_probs=25.2
Q ss_pred CChHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHh
Q 001206 124 CSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVAV 162 (1124)
Q Consensus 124 ~~s~~Ar~Ll~lG~~yl~qG---------dyeeAl~~f~kAL~i~e~i 162 (1124)
.....+-.+|++|.++...+ .+.+|..+|++|-.++.-+
T Consensus 114 l~fEka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~l 161 (346)
T cd09240 114 LGYEKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNHL 161 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777776664432 1577888999987766543
No 429
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=57.81 E-value=2.7e+02 Score=29.84 Aligned_cols=102 Identities=13% Similarity=0.119 Sum_probs=69.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 001206 177 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 256 (1124)
Q Consensus 177 LG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~ 256 (1124)
+-..-..-|.|.+|.+++.+.++. ....+...+|..++.|..-..+-..-..--.+..+.+-....+..|-.+.
T Consensus 99 qva~kis~~~~~eaK~LlnkIi~n------k~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWat 172 (220)
T PF10858_consen 99 QVAIKISEKKYSEAKQLLNKIIEN------KEYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWAT 172 (220)
T ss_pred HHHHHHhhcchhHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchHHH
Confidence 334455678999999999998886 33567888899999988876543322222233333333333455677777
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001206 257 TYINVAMMEEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 257 al~nLA~iy~~lGdyeeAle~lekALei 284 (1124)
+-..-|..-...|.-.+|+++++..+..
T Consensus 173 AtI~kaiwdik~nm~~~aeknL~~l~~S 200 (220)
T PF10858_consen 173 ATIIKAIWDIKNNMKNQAEKNLKNLLAS 200 (220)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 7667777888889999999999877654
No 430
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.91 E-value=97 Score=41.13 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=6.6
Q ss_pred ccccCCCCCCCcc
Q 001206 812 LSASAVPFNPSPA 824 (1124)
Q Consensus 812 lsa~a~pfnps~~ 824 (1124)
.++++.|--|++.
T Consensus 710 ~~~~~~~~~~~t~ 722 (1049)
T KOG0307|consen 710 VGAAPTPKQPTTS 722 (1049)
T ss_pred cccCCCCCCCCCC
Confidence 5555555554443
No 431
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=56.66 E-value=1e+02 Score=30.97 Aligned_cols=86 Identities=12% Similarity=0.033 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 001206 227 QHTELALKYVKRALYLLHLT-CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAI 305 (1124)
Q Consensus 227 GdyeeAley~ekALei~ek~-~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ 305 (1124)
+.-..-..++++++..+... .-.+++....++...|.... .+.+.|+.... +-.|.. .+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~---~~IG~~---~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYS---KGIGTK---LALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHH---HTTSTT---BHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHH---cCccHH---HHHHHHHHHH
Confidence 44555667888888876432 11245556666655555332 77777775443 233433 4677888899
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 001206 306 ALSLMEAYPLSVQHEQTTL 324 (1124)
Q Consensus 306 ly~~lGd~eeAle~lekAL 324 (1124)
.+...|++.+|...|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998764
No 432
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=56.64 E-value=1.8e+02 Score=35.62 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 001206 215 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 276 (1124)
Q Consensus 215 ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle 276 (1124)
.|..||.....+|+++-|+++|+++-..-...+--.......-+..|+.+....|++.-|..
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~ 410 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQ 410 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHH
Confidence 56667777777777777777777654321110000000112334445555555555555443
No 433
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=55.82 E-value=1.3e+02 Score=31.99 Aligned_cols=105 Identities=14% Similarity=0.010 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 210 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p 210 (1124)
+++++-..-+..|.|.+|.+++.+.++.- ...+...+|..+++|.....+-..-+.--.+..+.+--...+..|
T Consensus 95 A~leqva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kP 168 (220)
T PF10858_consen 95 AALEQVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKP 168 (220)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCc
Confidence 34555556678899999999999998873 345677889999999887755333333333333322222233445
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001206 211 DTMKSYGDLAVFYYRLQHTELALKYVKRALY 241 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lGdyeeAley~ekALe 241 (1124)
-.+.+-...|..-...|.-.+|+++++..+.
T Consensus 169 FWatAtI~kaiwdik~nm~~~aeknL~~l~~ 199 (220)
T PF10858_consen 169 FWATATIIKAIWDIKNNMKNQAEKNLKNLLA 199 (220)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 5555555566677788999999999988765
No 434
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=55.38 E-value=64 Score=33.73 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 001206 211 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 290 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG 290 (1124)
.....+..+..+-...++++++...+....-+ .|........-|.++...|+|.+|+..|+...+-.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~----- 74 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA----- 74 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC-----
Confidence 34455566666666688999888777654332 45566666778999999999999999998765432
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChH
Q 001206 291 PDHIQTAASYHAIAIALSLMEAYP 314 (1124)
Q Consensus 291 ~d~p~~A~a~~nLA~ly~~lGd~e 314 (1124)
.+ ...+.-.++.|+..+||.+
T Consensus 75 -~~--~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 75 -GA--PPYGKALLALCLNAKGDAE 95 (153)
T ss_pred -CC--chHHHHHHHHHHHhcCChH
Confidence 12 2333444688888888764
No 435
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.36 E-value=2.5e+02 Score=34.93 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 001206 300 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 332 (1124)
Q Consensus 300 ~~nLA~ly~~lGd~eeAle~lekALei~~k~lG 332 (1124)
.+.+|..|...++|.+|+.+|.+|+..+++..+
T Consensus 425 C~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~ 457 (593)
T KOG2460|consen 425 CFYIAVSYQAKKKYSEALALYVRAYSYLQEVNS 457 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999988776543
No 436
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=54.95 E-value=1.8e+02 Score=36.53 Aligned_cols=112 Identities=17% Similarity=0.068 Sum_probs=74.5
Q ss_pred cCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Q 001206 163 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKR-ALY 241 (1124)
Q Consensus 163 ~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ek-ALe 241 (1124)
+++.++...-++. +...+...++...+...++.++.. ++..+.++.+||......|....++.-+.. +..
T Consensus 60 ~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~ 130 (620)
T COG3914 60 INDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEW 130 (620)
T ss_pred cCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3556676655555 888888888888887777777664 466788999999988877776655544433 443
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 242 LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 242 i~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
+... ... -......++.+|..+..+|+..++..+++++.++.
T Consensus 131 ~~~~-~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~ 172 (620)
T COG3914 131 LSPD-NAE-FLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLL 172 (620)
T ss_pred cCcc-hHH-HHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 2110 000 00011223347888999999999999999888876
No 437
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=54.27 E-value=4.2e+02 Score=31.47 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=24.8
Q ss_pred CChHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHH
Q 001206 124 CSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVA 161 (1124)
Q Consensus 124 ~~s~~Ar~Ll~lG~~yl~qG---------dyeeAl~~f~kAL~i~e~ 161 (1124)
.....+-.+|++|.+|...| .+..|..+|++|-.++.-
T Consensus 101 l~fEkasVLFNigAl~Sq~aa~~~r~~~eglK~A~~~Fq~AAG~F~~ 147 (350)
T cd09244 101 VAFEKASVLFNIGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFNY 147 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777664432 367888888888776543
No 438
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=53.59 E-value=14 Score=40.95 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=50.5
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 262 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 262 A~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
+.+....++.+-|.++|.+|+++. +..+..|+.+|....+.|+++.|...|++.+++
T Consensus 2 a~~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 345667889999999999999986 677889999999999999999999999998886
No 439
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.58 E-value=1.7e+02 Score=38.85 Aligned_cols=49 Identities=20% Similarity=-0.021 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSL 176 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~n 176 (1124)
...||.....|..++-.|++..|++.|..|++++... .|+...+.+|-.
T Consensus 242 ksLGR~~Kq~gdy~LLAGrpvdAl~~fs~AIe~lk~t--~DyLWlg~AldG 290 (1235)
T KOG1953|consen 242 KSLGRIEKQFGDYYLLAGRPVDALKHFSTAIELLKAT--GDYLWLGLALDG 290 (1235)
T ss_pred hhHHHHHHhhcceeeecCCchHHHHHHHHHHHHHHhh--hhheeehhhccc
Confidence 3467888888999999999999999999999998876 455555555544
No 440
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=52.83 E-value=49 Score=38.97 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 001206 296 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 330 (1124)
Q Consensus 296 ~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~ 330 (1124)
.+.+++.+|..+...+++.+|+.+++.|...++..
T Consensus 238 ~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a 272 (377)
T PF03097_consen 238 RALAHYHQALAAEEAKKYGEAIARLRRAEEALKEA 272 (377)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 45566677777778888888888888887776554
No 441
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=52.23 E-value=2.6e+02 Score=32.89 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 255 AATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 255 a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
+.+++.+|......+++-+|+.+|+.|+...++
T Consensus 253 A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~ 285 (346)
T cd09247 253 ARSQLYLARRLKEAGHIGVAVGVLREALRNLKK 285 (346)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 456666777777778888888888887776533
No 442
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=51.58 E-value=1.7e+02 Score=34.72 Aligned_cols=16 Identities=19% Similarity=-0.014 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 001206 187 FNQATIYQQKALDINE 202 (1124)
Q Consensus 187 ydeAle~~~KALeI~e 202 (1124)
+..|..+|++|--++.
T Consensus 131 lK~A~~~Fq~AAG~F~ 146 (350)
T cd09244 131 IEAAVDAFQRAAGAFN 146 (350)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5667777777765543
No 443
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=51.56 E-value=3.3e+02 Score=32.08 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 001206 297 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 329 (1124)
Q Consensus 297 A~a~~nLA~ly~~lGd~eeAle~lekALei~~k 329 (1124)
+.+++..|..+...+++.+|+.+++.|...++.
T Consensus 244 A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~ 276 (348)
T cd09242 244 SLAAYYHALALEAAGKYGEAIAYLTQAESILKE 276 (348)
T ss_pred HHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHH
Confidence 445556666666677788888888777765543
No 444
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=50.98 E-value=4.9e+02 Score=30.83 Aligned_cols=33 Identities=15% Similarity=0.008 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 295 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 295 ~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
..+.+++..|..+...+++-+|+.+++.|...+
T Consensus 245 f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l 277 (353)
T cd09246 245 FRAEALYRAAKDLHEKEDIGEEIARLRAASDAL 277 (353)
T ss_pred HHHHHHHHHHHHhHHhcchHHHHHHHHHHHHHH
Confidence 345667777777888889999999998887654
No 445
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=50.36 E-value=28 Score=40.78 Aligned_cols=115 Identities=16% Similarity=0.102 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC------C-----ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001206 216 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP------S-----HPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 216 y~nLA~iy~~lGdyeeAley~ekALei~ek~~G~------d-----hp~~a~al~nLA~iy~~lGdyeeAle~lekALei 284 (1124)
.-+.|...+..++|+.|..-|.+++..+...-.. + ......++.+++.+-...+.+..|+..-..+++
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~- 303 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR- 303 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc-
Confidence 3456777889999999999999988866521100 1 112345677888999999999998887776665
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 001206 285 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 343 (1124)
Q Consensus 285 ~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~ 343 (1124)
........++..+..|..+.++++|++.++.+... .+++......+.
T Consensus 304 -------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~-----~p~d~~i~~~~~ 350 (372)
T KOG0546|consen 304 -------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK-----APNDKAIEEELE 350 (372)
T ss_pred -------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc-----CcchHHHHHHHH
Confidence 23445678899999999999999999999988764 355554444433
No 446
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=50.32 E-value=3.3e+02 Score=33.02 Aligned_cols=174 Identities=14% Similarity=0.103 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHcCC--------------------------HHHHHHHHHHHHHHHHHhc---------------
Q 001206 209 HPDTMKSYGDLAVFYYRLQH--------------------------TELALKYVKRALYLLHLTC--------------- 247 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGd--------------------------yeeAley~ekALei~ek~~--------------- 247 (1124)
+.+.+.+++|+|.+|..++. +..|..+|++|--++.-+.
T Consensus 113 ~fE~a~VLfnla~l~S~~A~~~l~~~~~~~~~~~is~~~~~~~~e~lK~A~~~l~~AAGvf~~L~~~~l~~~~~~~~~~~ 192 (413)
T cd09245 113 HYELAFVLLTYAYALSNLARSILAPLGAYETDRSISDASRKQRDERLKAATKLLCKAAGIFDYLATRVLPQWESNRGGAP 192 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC
Q ss_pred --CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 248 --GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 325 (1124)
Q Consensus 248 --G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALe 325 (1124)
.+-.+.+..++..|+....+.--+.+++.+--.. +-....-+++.+.....-..+|.+... +.++|++|.+
T Consensus 193 ~~~DLs~~~l~aL~~L~LAqAQel~~~K~~~~~~~~-d~~~~~~ap~~~k~~~s~sLiAKLa~~------~~~~y~~A~~ 265 (413)
T cd09245 193 PPPDLSPEVLSALSSLALAEATLLAVRKLDPYPAAV-DKDWMTPGPPLPKVHPSAHLLARLCLA------ASEHAESARA 265 (413)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHhhhhhcccc-cchhcccCcccccccccHHHHHHHHHH------HHHHHHHHHH
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001206 326 ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 405 (1124)
Q Consensus 326 i~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekA 405 (1124)
.+... +...........|+.++..+..-..-.. ++++|......+++-+|+.+++.|
T Consensus 266 ~l~~~-~~~~~~~~i~~~~~~yl~~k~~~~~A~A----------------------~~~~g~d~~e~~k~GeaIa~L~~A 322 (413)
T cd09245 266 LLSTP-GSKRGSGEVSEELLRYLSDLRRVARALA----------------------CKFLGIDAGENGKVGEAIGWLRAA 322 (413)
T ss_pred HHhcc-ccccccccccHHHHHHHHHHHHHHHHHH----------------------HHHHHHhhHhcCCHHHHHHHHHHH
Q ss_pred HHHHhhh
Q 001206 406 AKVKGNF 412 (1124)
Q Consensus 406 LkL~~sl 412 (1124)
.......
T Consensus 323 ~~~L~~~ 329 (413)
T cd09245 323 KKELEDL 329 (413)
T ss_pred HHHHHHh
No 447
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=50.12 E-value=31 Score=39.76 Aligned_cols=59 Identities=17% Similarity=0.105 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 176 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 176 nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
+.|.-.+..|+.++|..+|+.|+.+. |....++..+|.+.....+.-+|-.||-+||.+
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlala--------P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALA--------PTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcC--------CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 34444566899999999999999983 444567788899888889999999999999975
No 448
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=49.15 E-value=2.7e+02 Score=36.52 Aligned_cols=117 Identities=14% Similarity=0.098 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHH-HHHH-HHHHHHHHHHHh
Q 001206 169 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE-LALK-YVKRALYLLHLT 246 (1124)
Q Consensus 169 ~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdye-eAle-y~ekALei~ek~ 246 (1124)
...+.|..-|.+.-..+--+-|-++|.+|+.++|... .|......+...+...+.+...+. +-.+ +..++-....++
T Consensus 590 lalkL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~I-sDSk~Q~~aL~~ii~tL~~~r~~~~Enyd~L~tk~t~yasKL 668 (762)
T PF03635_consen 590 LALKLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEI-SDSKAQFQALTLIIGTLQKTRSFSEENYDTLITKCTLYASKL 668 (762)
T ss_dssp HHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHh
Confidence 3445566666666666655568899999999999755 355555666666666665555443 2211 111222222222
Q ss_pred cCCCChhHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHHHh
Q 001206 247 CGPSHPNTAATYINVAMMEEGLG----------NVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 247 ~G~dhp~~a~al~nLA~iy~~lG----------dyeeAle~lekALei~~k~ 288 (1124)
+ ..++.+.+.+.-+.+|+... +-...+++++||++++...
T Consensus 669 L--KK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAds~ 718 (762)
T PF03635_consen 669 L--KKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIADSC 718 (762)
T ss_dssp S--SHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHHCS
T ss_pred c--CcHHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHHHH
Confidence 2 34677777777788877654 5667899999999998665
No 449
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=49.00 E-value=1e+02 Score=28.47 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVA 161 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~ 161 (1124)
.|..+...|..+-..|+|++|+.+|.++++.+..
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 4666777888888999999999999999998765
No 450
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.64 E-value=1.1e+02 Score=40.47 Aligned_cols=193 Identities=15% Similarity=0.081 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHH---
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF--NQATIYQQKALDINE--- 202 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdy--deAle~~~KALeI~e--- 202 (1124)
....+..++..|..+|+.++|++++.+...-.. ..+......+-.+-..+..++.- +-..+|-...+.-..
T Consensus 503 k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~----~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~g 578 (877)
T KOG2063|consen 503 KSKKYRELIELYATKGMHEKALQLLRDLVDEDS----DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAG 578 (877)
T ss_pred hcccHHHHHHHHHhccchHHHHHHHHHHhcccc----ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhh
Confidence 345677888899999999999999988765321 01112222222222222222322 333344333332111
Q ss_pred -HhcCCCChhHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHHCCCHHHHHHH--
Q 001206 203 -RELGLDHPDTMKSY-GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM-MEEGLGNVHVALRY-- 277 (1124)
Q Consensus 203 -r~lg~D~p~~a~ay-~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~-iy~~lGdyeeAle~-- 277 (1124)
+++-.+....+... ...-.-|......+-++.|++.++..++.....-|...+..|..... .-...++-++|.+.
T Consensus 579 i~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~ 658 (877)
T KOG2063|consen 579 IQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTV 658 (877)
T ss_pred eeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhH
Confidence 11111111111111 11222345677788899999999876544211112222222222111 11122333455555
Q ss_pred HHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 278 LHKALKCNQRLLGPDHI-------QTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 325 (1124)
Q Consensus 278 lekALei~~k~lG~d~p-------~~A~a~~nLA~ly~~lGd~eeAle~lekALe 325 (1124)
.++.+...+ ....-++ .....|...|.++.++|++++|+..|-..+.
T Consensus 659 rekl~~~l~-~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 659 REKLLDFLE-SSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHHHHHhh-hhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 333333322 2111111 1245577888999999999999987765544
No 451
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=48.56 E-value=3.2e+02 Score=32.27 Aligned_cols=38 Identities=11% Similarity=-0.001 Sum_probs=24.9
Q ss_pred ChHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHh
Q 001206 125 SSADGRQLLESSKTALDK---------GKLEDAVTYGTKALAKLVAV 162 (1124)
Q Consensus 125 ~s~~Ar~Ll~lG~~yl~q---------GdyeeAl~~f~kAL~i~e~i 162 (1124)
....+-.+|++|.++.+. ..+.+|..+|++|-.++.-+
T Consensus 102 ~fEka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l 148 (355)
T cd09241 102 KFERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYI 148 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777666432 34788889999988776543
No 452
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=48.55 E-value=64 Score=30.08 Aligned_cols=35 Identities=17% Similarity=-0.073 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 213 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 247 (1124)
Q Consensus 213 a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~ 247 (1124)
+..+.+.|..+-..|+.++|+.+|++++..+.+-.
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ 42 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLRELEEGI 42 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHc
Confidence 44455556666677999999999999999887744
No 453
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=47.85 E-value=35 Score=28.23 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 001206 133 LESSKTALDKGKLEDAVTYGTKALA 157 (1124)
Q Consensus 133 l~lG~~yl~qGdyeeAl~~f~kAL~ 157 (1124)
+.+|+.|+..|+++.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6788999999999999999999884
No 454
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=47.77 E-value=5.6e+02 Score=30.65 Aligned_cols=84 Identities=10% Similarity=-0.012 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhcC-----CCChhHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHhcCCCcHH--
Q 001206 227 QHTELALKYVKRALYLLHLTCG-----PSHPNTAATYINVAMMEEGL----GNVHVALRYLHKALKCNQRLLGPDHIQ-- 295 (1124)
Q Consensus 227 GdyeeAley~ekALei~ek~~G-----~dhp~~a~al~nLA~iy~~l----GdyeeAle~lekALei~~k~lG~d~p~-- 295 (1124)
-+|++|..+|..++..+.+... ..-.+.+.+...++.+|..+ .+.+.-+.+.++=+++.+..+..-.+.
T Consensus 138 ~~f~dAr~vF~~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y 217 (371)
T PF12309_consen 138 LDFDDAREVFLNGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYY 217 (371)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 4678888888777765544211 11223355555666665543 667777888888777776655433332
Q ss_pred ---HHHHHHHHHHHHHHc
Q 001206 296 ---TAASYHAIAIALSLM 310 (1124)
Q Consensus 296 ---~A~a~~nLA~ly~~l 310 (1124)
.-.+++.||.+|..+
T Consensus 218 ~~~~rql~fElae~~~~i 235 (371)
T PF12309_consen 218 LNLCRQLWFELAEIYSEI 235 (371)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 123456666666544
No 455
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=47.11 E-value=29 Score=28.69 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=23.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001206 258 YINVAMMEEGLGNVHVALRYLHKALK 283 (1124)
Q Consensus 258 l~nLA~iy~~lGdyeeAle~lekALe 283 (1124)
.++||.+|..+|+++.|.+.+++.+.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36799999999999999999999884
No 456
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=47.08 E-value=6e+02 Score=32.85 Aligned_cols=52 Identities=6% Similarity=0.020 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 276 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 276 e~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
+-|++.|+..++..-...|...+-|.-.|.-....|+|.++..+....++++
T Consensus 632 k~frr~Le~serqsf~gPPEn~RehVvaAsKAm~~Gnw~~c~~fi~nn~KvW 683 (843)
T KOG1076|consen 632 KSFRRQLEHSERQSFTGPPENTREHVVAASKAMQKGNWQKCFEFIVNNIKVW 683 (843)
T ss_pred HHHHHHHHHHhhccccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhhhhHH
Confidence 3455666666554434456677777777877889999999999876655554
No 457
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=46.66 E-value=1.8e+02 Score=34.89 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=12.4
Q ss_pred CCCCCCCCccCCCC---CCCC
Q 001206 926 NGNSNVPEFIPGPF---LPGY 943 (1124)
Q Consensus 926 ~~~~~~~~f~p~~~---~~~~ 943 (1124)
|.-..+--|||.+. |.|-
T Consensus 425 N~kaElT~~VPa~lRVRRE~~ 445 (487)
T KOG4672|consen 425 NLKAELTRLVPAQLRVRREGD 445 (487)
T ss_pred ccchHHHhhcchheeeeccCC
Confidence 34456677888887 7664
No 458
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=46.42 E-value=1e+02 Score=28.50 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 163 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~ 163 (1124)
..|..+...|..+-..|++.+|+.+|+++++++.++.
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 3577788888899999999999999999999987764
No 459
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=46.35 E-value=7.1e+02 Score=31.40 Aligned_cols=123 Identities=19% Similarity=0.089 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHH
Q 001206 216 YGDLAVFYYRLQHT-------ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN---VHVALRYLHKALKCN 285 (1124)
Q Consensus 216 y~nLA~iy~~lGdy-------eeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGd---yeeAle~lekALei~ 285 (1124)
+...+.++...|+. ++|..+|+++++.... ....+|+.++..-...-+ ++.--.++++++.+.
T Consensus 289 l~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~-------~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~ 361 (656)
T KOG1914|consen 289 LIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK-------ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE 361 (656)
T ss_pred HHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh
Confidence 34455666666665 4555555555553221 123344444443333222 555556666666554
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHH
Q 001206 286 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQE 357 (1124)
Q Consensus 286 ~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~ae 357 (1124)
+.+...+|.++-..-.+..-...|...|.+|-+. ..+..| +-.+.+.+.+...++.+-+-
T Consensus 362 -------~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~---~r~~hh--VfVa~A~mEy~cskD~~~Af 421 (656)
T KOG1914|consen 362 -------DIDLTLVYCQYMNFIRRAEGLKAARKIFKKARED---KRTRHH--VFVAAALMEYYCSKDKETAF 421 (656)
T ss_pred -------ccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhc---cCCcch--hhHHHHHHHHHhcCChhHHH
Confidence 2222333444444445555566677777766543 112222 22344445555544444443
No 460
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.05 E-value=3.3e+02 Score=35.86 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001206 133 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 203 (1124)
Q Consensus 133 l~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er 203 (1124)
....+.|+++|+|+.|+++.+..-+ ..-.++..-|..|+..++|..|.++|-+.+.-++.
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~p~-----------~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEE 421 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTRPD-----------ALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEE 421 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCCHH-----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Confidence 3455789999999999887765422 12246778888999999999999998887666554
No 461
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=45.93 E-value=1.1e+02 Score=28.14 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 163 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~ 163 (1124)
..|..+...|..+-..|+|++|+.+|.++++.+...+
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l 40 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVL 40 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888899999999999999999877643
No 462
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=45.33 E-value=2.2e+02 Score=26.33 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 001206 299 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 330 (1124)
Q Consensus 299 a~~nLA~ly~~lGd~eeAle~lekALei~~k~ 330 (1124)
.+...|.-+-..|+|++|+.+|+++++.+...
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 34445556667899999999999999998873
No 463
>PRK14707 hypothetical protein; Provisional
Probab=45.21 E-value=2.1e+02 Score=40.94 Aligned_cols=157 Identities=14% Similarity=0.039 Sum_probs=98.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 175 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS--YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 252 (1124)
Q Consensus 175 ~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~a--y~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp 252 (1124)
..++.++.-++++.+.-.+-.-+..+..++. +++..... -..+++++..+.+|.++-.|-.-++.+...+-+ .+
T Consensus 961 Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~--~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~--ep 1036 (2710)
T PRK14707 961 SNLPQVLNALSKWPDVPAGGEVVDALAERLV--DEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLSN--DP 1036 (2710)
T ss_pred HHHHHHHhhhccCCCchHHHHHHHHHHHHHh--ccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhcc--CH
Confidence 3466666777777776666666666665542 22222222 346788888888987777777777776666532 23
Q ss_pred hHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 001206 253 NTAA--TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 330 (1124)
Q Consensus 253 ~~a~--al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~ 330 (1124)
.... --..++.++..+.+|.+.-.+-.-+..+...+........+..-..++.++..+-++-+.-.+-+.++.+...+
T Consensus 1037 ~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL 1116 (2710)
T PRK14707 1037 GLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRL 1116 (2710)
T ss_pred hhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 3322 23467888888888887777777666666554332222233344567888888888887777777777777766
Q ss_pred cCCCC
Q 001206 331 LGPDD 335 (1124)
Q Consensus 331 lG~dh 335 (1124)
.+..+
T Consensus 1117 ~~~~~ 1121 (2710)
T PRK14707 1117 TDDAG 1121 (2710)
T ss_pred ccccc
Confidence 44433
No 464
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=45.17 E-value=26 Score=38.92 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=50.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 221 VFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 221 ~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
......++.+.|.+.|.+|+++ -|..+..++.+|....+.|+++.|.+.|++.|++.
T Consensus 3 ~~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred chhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3456778999999999999986 47778899999999999999999999999999874
No 465
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=45.12 E-value=3.2e+02 Score=32.21 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 379 SDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 379 aell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
+..+++.|......+++-+|+.+++.|........
T Consensus 244 A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~ 278 (348)
T cd09242 244 SLAAYYHALALEAAGKYGEAIAYLTQAESILKEAN 278 (348)
T ss_pred HHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHHH
Confidence 34555667777778999999999999998776554
No 466
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=45.08 E-value=81 Score=38.94 Aligned_cols=84 Identities=13% Similarity=-0.054 Sum_probs=56.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 001206 226 LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAI 305 (1124)
Q Consensus 226 lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ 305 (1124)
.+....|+..|.+++.. .+.....|.|.|.++.+.+=...+...++.+.... .-.+....+++.|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Al-----rln~s~~kah~~la~ 453 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVAL-----RLNPSIQKAHFRLAR 453 (758)
T ss_pred hHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhc-----cCChHHHHHHHHHHH
Confidence 34456677777777653 45566778888888887654444444443333322 123566788999999
Q ss_pred HHHHcCChHHHHHHHHH
Q 001206 306 ALSLMEAYPLSVQHEQT 322 (1124)
Q Consensus 306 ly~~lGd~eeAle~lek 322 (1124)
++..++++.+|+.+...
T Consensus 454 aL~el~r~~eal~~~~a 470 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWA 470 (758)
T ss_pred HHHHHhhHHHhhhhHHH
Confidence 99999999999987653
No 467
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=45.02 E-value=98 Score=37.76 Aligned_cols=125 Identities=18% Similarity=0.074 Sum_probs=70.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 001206 137 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 216 (1124)
Q Consensus 137 ~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay 216 (1124)
...+..|++-.|-+-...+|..+. ..|. .....+.++.++|+|+.|...+..+-.+. +..+ .+.
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~-----~~p~---~i~l~~~i~~~lg~ye~~~~~~s~~~~~~----~s~~----~~~ 360 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQ-----QDPV---LIQLRSVIFSHLGYYEQAYQDISDVEKII----GTTD----STL 360 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCC-----CCch---hhHHHHHHHHHhhhHHHHHHHhhchhhhh----cCCc----hHH
Confidence 345677888888777777766532 2333 34456788999999999988765543332 2221 122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 217 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 217 ~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
..+-.-.+.+|++++|+....-.|.- + -..++... --|.....+|-+++|..++++.+.+.
T Consensus 361 ~~~~r~~~~l~r~~~a~s~a~~~l~~--e---ie~~ei~~---iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 361 RCRLRSLHGLARWREALSTAEMMLSN--E---IEDEEVLT---VAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHhhhchhhHHHHHHHHHHHhcc--c---cCChhhee---eecccHHHHhHHHHHHHHHHHHhccC
Confidence 23334456777888877655443321 0 12233222 12333344556677777777766654
No 468
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.46 E-value=61 Score=39.16 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=12.5
Q ss_pred CCccCCCCCCCCCCCCCCCCccCCCCCCCCCC
Q 001206 891 LPFMYPPYTQPQGVPTSTFPVTTSAFHHNHFS 922 (1124)
Q Consensus 891 ~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~ 922 (1124)
||.|| |++|+..-|. .-|--.+.||.+|+.
T Consensus 451 mpp~~-P~~~~pppP~-~pp~p~~~~~q~q~~ 480 (483)
T KOG2236|consen 451 MPPAY-PHQQSPPPPP-PPPPPNSPMNQMQNP 480 (483)
T ss_pred CCCCC-ccccCCCCCC-CCCCCCChhhcccCC
Confidence 45555 3344433331 112223455555543
No 469
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=42.86 E-value=1.3e+02 Score=27.26 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 163 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~ 163 (1124)
.|..++..|...-..|+|++|+.+|.++++.+....
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~ 40 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHAL 40 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 456677778888899999999999999999876653
No 470
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=41.90 E-value=2.2e+02 Score=25.14 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 001206 299 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 332 (1124)
Q Consensus 299 a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG 332 (1124)
.+...|.-+-..|++++|+.+|.+++..+...+.
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~ 40 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEYLMQALK 40 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3444566666789999999999999998877654
No 471
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=41.88 E-value=1e+02 Score=27.26 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAV 162 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i 162 (1124)
.|..+...|..+-..|++++|+.+|.+++..+...
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 46677788888899999999999999999987654
No 472
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=41.43 E-value=1.5e+02 Score=33.11 Aligned_cols=105 Identities=18% Similarity=0.091 Sum_probs=62.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCC---C-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 001206 221 VFYYRLQHTELALKYVKRALYLLHLTCGP---S-HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 296 (1124)
Q Consensus 221 ~iy~~lGdyeeAley~ekALei~ek~~G~---d-hp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~ 296 (1124)
.-++..|+|+.|+++.+-|++.-...-.. + ....+.....-+......|+--+. .+++....+. ....-.....
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~-~~~dmpd~vr 168 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLT-TEWDMPDEVR 168 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHH-hcCCCChHHH
Confidence 34578899999999999999842221100 0 011233444555556666652222 2333333333 2223334456
Q ss_pred HHHHHHHHHHHH---------HcCChHHHHHHHHHHHHHH
Q 001206 297 AASYHAIAIALS---------LMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 297 A~a~~nLA~ly~---------~lGd~eeAle~lekALei~ 327 (1124)
+..|-.+|..+. ..++...|+.++++|+++-
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~ 208 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLN 208 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhC
Confidence 777878888773 5567889999999999873
No 473
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=41.17 E-value=8.6e+02 Score=30.90 Aligned_cols=112 Identities=15% Similarity=0.137 Sum_probs=74.0
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHH
Q 001206 205 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK-ALK 283 (1124)
Q Consensus 205 lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lek-ALe 283 (1124)
.+..++.+..++. +...+...+....|.-.++.++.. .+..+.+..+||......|..-.+...+.. ++.
T Consensus 60 ~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~ 130 (620)
T COG3914 60 INDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEW 130 (620)
T ss_pred cCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3566777777776 888888888887777666666653 466677888888888777766665544443 444
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 284 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 284 i~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
..... . ........++.++.+...+|+..+|...++++.++.
T Consensus 131 ~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~ 172 (620)
T COG3914 131 LSPDN-A-EFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLL 172 (620)
T ss_pred cCcch-H-HHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 32110 0 001111223348999999999999999888888764
No 474
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=40.18 E-value=4.2e+02 Score=30.71 Aligned_cols=137 Identities=9% Similarity=-0.025 Sum_probs=77.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-----CChhHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 175 SLLAVVLYHTGDFNQATIYQQKALDINERELGL-----DHPDTMKSYGDLA-VFYYRLQHTELALKYVKRALYLLHLTCG 248 (1124)
Q Consensus 175 ~nLG~ly~~lGdydeAle~~~KALeI~er~lg~-----D~p~~a~ay~nLA-~iy~~lGdyeeAley~ekALei~ek~~G 248 (1124)
-.-|..+.-..||..|++.++++++.....-.. ...+.--++.-+| .++..+++|.+.+.+.-+-.+.-+++
T Consensus 39 e~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl-- 116 (309)
T PF07163_consen 39 EEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL-- 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC--
Confidence 334555556678999999999999876221111 1122333444455 35678899999988876654432221
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHHcCChHHHHHHHH
Q 001206 249 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT-AASYHAIAIALSLMEAYPLSVQHEQ 321 (1124)
Q Consensus 249 ~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~-A~a~~nLA~ly~~lGd~eeAle~le 321 (1124)
.+.+ +-.--.+|.+.+++...++.-..=|..- .+..-+.. ..+-..|-.++.=+|.+++|+++..
T Consensus 117 --PpkI---leLCILLysKv~Ep~amlev~~~WL~~p---~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 117 --PPKI---LELCILLYSKVQEPAAMLEVASAWLQDP---SNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred --CHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhCc---ccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 2333 3333456888888887766554433321 01111111 1122234555566899999998763
No 475
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=39.95 E-value=1.1e+02 Score=28.64 Aligned_cols=57 Identities=19% Similarity=-0.012 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001206 173 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 240 (1124)
Q Consensus 173 ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekAL 240 (1124)
.+...|..+-..|+.++|+.+|++++.+.++......+ .......|+.|..+-++..
T Consensus 10 ~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~-----------~~~~~~~w~~ar~~~~Km~ 66 (79)
T cd02679 10 EEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVP-----------SAGVGSQWERARRLQQKMK 66 (79)
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCC-----------cccccHHHHHHHHHHHHHH
Confidence 34444555556799999999999999998876544332 1223334566665555543
No 476
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=39.69 E-value=65 Score=41.19 Aligned_cols=7 Identities=43% Similarity=0.686 Sum_probs=4.0
Q ss_pred cCCCCCC
Q 001206 864 LPTVNPM 870 (1124)
Q Consensus 864 ~~~~~~~ 870 (1124)
+|.-||+
T Consensus 626 ~Pg~np~ 632 (894)
T KOG0132|consen 626 RPGYNPY 632 (894)
T ss_pred CCCCCCC
Confidence 5555655
No 477
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=39.49 E-value=1.5e+02 Score=32.73 Aligned_cols=15 Identities=20% Similarity=0.098 Sum_probs=8.3
Q ss_pred Ccccccccccccccc
Q 001206 502 GRRLKQRRATIGKVH 516 (1124)
Q Consensus 502 ~~~~~~~~~~~~k~~ 516 (1124)
+...|.|||.+-=-|
T Consensus 274 ~~a~ksrkp~i~iey 288 (303)
T COG5129 274 DDAKKSRKPHIHIEY 288 (303)
T ss_pred CchhhccCCceeeeh
Confidence 444566777664333
No 478
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=39.46 E-value=3e+02 Score=25.52 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 001206 297 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 332 (1124)
Q Consensus 297 A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG 332 (1124)
+..+...|.-+-..|++.+|+.+|+++++.+.+.+.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~ 41 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK 41 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777889999999999999999887653
No 479
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=39.33 E-value=2.8e+02 Score=25.57 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc-CCCCHHHHH
Q 001206 300 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKL-GPDDLRTQD 340 (1124)
Q Consensus 300 ~~nLA~ly~~lGd~eeAle~lekALei~~k~l-G~dh~~t~~ 340 (1124)
+...|.-+-..|+|++|+.+|.++++.+...+ ...++....
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~ 50 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKK 50 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHH
Confidence 33445555678999999999999999988755 333444433
No 480
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=39.23 E-value=87 Score=38.17 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=46.9
Q ss_pred CCCCCCCCCCCCCCCCCccCCccCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCccccccCC
Q 001206 872 SSPHQPYPSPPSTPNMMQPLPFMYPPYTQPQGVPTSTFPVTTSAFHHNHFSWQCNGNSNVPEFIPGPFLPGYHPMEFSVP 951 (1124)
Q Consensus 872 ~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~~~~~~~~~~ 951 (1124)
+-|||..||+|.||.-.+-..- + |. -++.+.|+-.-.+. .|- -|++.=|-.||++=|-.
T Consensus 420 ~~~~~~~ps~p~tPSs~~ads~---------n-~a----~~s~a~h~l~~kp~----~h~---tP~~~~q~~~p~~ppk~ 478 (661)
T KOG2070|consen 420 SVPSHTLPSHPVTPSSKHADSK---------N-PA----PLSPAYHTLPHKPS----HHG---TPHTTIQNWGPLEPPKT 478 (661)
T ss_pred cccccCCCCCCCCcccccccCC---------C-CC----CCCcccCcCCCCCC----CCC---CCCCCccccCCCCCCCC
Confidence 3489999998888865332211 0 11 13455665311111 121 58888888899985444
Q ss_pred CCccccCCCcccccccccCC
Q 001206 952 PPVVEPILDPIMQPKAQSGD 971 (1124)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~~ 971 (1124)
.-|-+++.+-|..-|..
T Consensus 479 ---~kp~s~S~~~pNmKfa~ 495 (661)
T KOG2070|consen 479 ---PKPWSLSCLRPNMKFAP 495 (661)
T ss_pred ---CCCcchhhcCCCcccCC
Confidence 48999999999776665
No 481
>PRK14707 hypothetical protein; Provisional
Probab=38.31 E-value=2.5e+02 Score=40.28 Aligned_cols=195 Identities=12% Similarity=-0.041 Sum_probs=104.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH-
Q 001206 138 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGA--YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK- 214 (1124)
Q Consensus 138 ~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~a--y~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~- 214 (1124)
.+....+|-++-.+-.-++.+...+- ..+..... -..++.++.-+.++.+.-.+-.-+..+..++. +++.+..
T Consensus 1008 ~LNALSKWPd~~~Cr~AA~~LA~rLa--~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~--~d~~Lr~A 1083 (2710)
T PRK14707 1008 ALNALSKWLQMPVCAATVEALAARLS--NDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLS--DDLVLRNA 1083 (2710)
T ss_pred HHhhhhcCCCchHHHHHHHHHHHHhc--cCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhh--ccHHHHHh
Confidence 33344445444444444445544442 22222222 23456666666666655555555555555442 2233222
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 001206 215 -SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 293 (1124)
Q Consensus 215 -ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~ 293 (1124)
.-..+++++..+-+|-+.-.+-+-++.+...+....++........++.++..+.+|.....+=.-+..+..++.....
T Consensus 1084 l~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d~~ 1163 (2710)
T PRK14707 1084 LDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACESAIDVLAATLANAPG 1163 (2710)
T ss_pred hchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccchh
Confidence 2346788888888888888888888888877765555544444556666666666665544444444455544433322
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCH
Q 001206 294 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDL 336 (1124)
Q Consensus 294 p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~ 336 (1124)
...+..-..+|..+..+.++-+.-.+-+-++.+....-...++
T Consensus 1164 Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P 1206 (2710)
T PRK14707 1164 LRNALSAQGVAIALNALSKCLARPVCRSAFVLLAERAGSAELP 1206 (2710)
T ss_pred hhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCC
Confidence 2233334456666666666665555555555555444333333
No 482
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=38.05 E-value=7e+02 Score=29.00 Aligned_cols=100 Identities=19% Similarity=0.166 Sum_probs=66.1
Q ss_pred cCCCCCCcchHHhHHhhhhhhhhhc-----------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 99 FDMDSPSPFRKIDVVSLVPVHKQAA-----------CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH 167 (1124)
Q Consensus 99 Y~fd~a~~f~~eDI~~L~pv~K~~~-----------~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~ 167 (1124)
..|..-.+|..+.-...+.-..... ........+...+..+...+.++.|+..+++.+.-. ...
T Consensus 172 L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~-----~s~ 246 (301)
T TIGR03362 172 LKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQA-----REP 246 (301)
T ss_pred cccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-----CCh
Confidence 4577778888877554442211110 000113344556778888999999999988754421 223
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001206 168 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 203 (1124)
Q Consensus 168 p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er 203 (1124)
.........++.++...|.++-|..+|++.....++
T Consensus 247 R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~~ 282 (301)
T TIGR03362 247 RERFHWRLLLARLLEQAGKAELAQQLYAALDQQIQQ 282 (301)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 344556677899999999999999999998877654
No 483
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=37.92 E-value=4.1e+02 Score=33.93 Aligned_cols=32 Identities=13% Similarity=-0.240 Sum_probs=21.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 240 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekAL 240 (1124)
....-.+....|.-....|++++|+.+|.-|-
T Consensus 410 ~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~ 441 (613)
T PF04097_consen 410 EDFLREIIEQAAREAEERGRFEDAILLYHLAE 441 (613)
T ss_dssp SHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 34455666677777778888888887776543
No 484
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.52 E-value=1.5e+02 Score=38.15 Aligned_cols=115 Identities=16% Similarity=0.134 Sum_probs=63.9
Q ss_pred HhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 001206 161 AVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR---LQHTELALKYVK 237 (1124)
Q Consensus 161 ~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~---lGdyeeAley~e 237 (1124)
+.+..-+...+.+-.+|-..|....+|+.-+++.+..-.+-.. .+..++....+..|.++-+ -|+-++|+...-
T Consensus 191 ~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t---~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l 267 (1226)
T KOG4279|consen 191 TRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDT---LKVVETHNVRFHYAFALNRRNRPGDRAKALNTVL 267 (1226)
T ss_pred hhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcch---hhhhccCceEEEeeehhcccCCCccHHHHHHHHH
Confidence 3333444556778888888899999999887766544333100 0000011111222333333 356677777666
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHH---------HCCCHHHHHHHHHHHHHHH
Q 001206 238 RALYLLHLTCGPSHPNTAATYINVAMMEE---------GLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 238 kALei~ek~~G~dhp~~a~al~nLA~iy~---------~lGdyeeAle~lekALei~ 285 (1124)
.+++. .|.-.|+ .|+..|.+|. ..+..+.|+++|++|.+..
T Consensus 268 ~lve~----eg~vapD---m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeve 317 (1226)
T KOG4279|consen 268 PLVEK----EGPVAPD---MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVE 317 (1226)
T ss_pred HHHHh----cCCCCCc---eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccC
Confidence 66552 2333333 3344455554 4566788999999998753
No 485
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.55 E-value=7.9e+02 Score=29.13 Aligned_cols=119 Identities=18% Similarity=0.097 Sum_probs=70.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---------CC--
Q 001206 181 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC---------GP-- 249 (1124)
Q Consensus 181 y~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~---------G~-- 249 (1124)
.++..+..+-+.....||+| +++-+.+|..||.-. .--..+|+++|++||+..+..+ |.
T Consensus 194 AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~ 263 (556)
T KOG3807|consen 194 AWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQH 263 (556)
T ss_pred HHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccch
Confidence 33444555556666677776 355666776666432 2346788888888887544322 11
Q ss_pred ------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHH
Q 001206 250 ------SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL 315 (1124)
Q Consensus 250 ------dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~ee 315 (1124)
|......+...||+|..++|+..+|.+.++...+-. .-.....++.+|-..+..+.-|.+
T Consensus 264 da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~------pl~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 264 EAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEF------PLLTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred hhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223455678888888899888888887655432 122344556666666666554443
No 486
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=35.80 E-value=2.1e+02 Score=25.72 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 163 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~ 163 (1124)
.|..+...|...-..|+|++|+.+|.++++.+....
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 355566677777888999999999999999887654
No 487
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=35.77 E-value=36 Score=39.96 Aligned_cols=104 Identities=15% Similarity=0.024 Sum_probs=78.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC------C-----ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 174 YSLLAVVLYHTGDFNQATIYQQKALDINERELGL------D-----HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 174 y~nLG~ly~~lGdydeAle~~~KALeI~er~lg~------D-----~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
....|...+..++|..|..-|++++......-.. + ...-...+.|++.+-+..+.+..|+.....+++
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~- 303 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR- 303 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc-
Confidence 3456677888899999999999988776521000 1 112345677899999999999999877766665
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 243 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 243 ~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
..+....+++..+..|..+.++++|++.++.+....
T Consensus 304 -------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~ 339 (372)
T KOG0546|consen 304 -------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKA 339 (372)
T ss_pred -------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccC
Confidence 345567789999999999999999999999887654
No 488
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=35.25 E-value=8.8e+02 Score=29.29 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHH
Q 001206 212 TMKSYGDLAVFYYRLQH---------TELALKYVKRALYLLH 244 (1124)
Q Consensus 212 ~a~ay~nLA~iy~~lGd---------yeeAley~ekALei~e 244 (1124)
.+.+++|+|.+|...|- ++.|..+|++|-..+.
T Consensus 105 KasVLFNigAL~Sqlaa~~~r~t~eGlK~A~~~FQ~AAG~F~ 146 (384)
T cd09248 105 KGSVLFNIGALHTQIGARQDRSCTEGTRRAIDAFQRAAGAFS 146 (384)
T ss_pred HHHHHHhHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHH
Confidence 45567777777765553 6788889988876554
No 489
>PF15336 Auts2: Autism susceptibility gene 2 protein
Probab=35.07 E-value=2.8e+02 Score=30.48 Aligned_cols=17 Identities=35% Similarity=0.731 Sum_probs=11.1
Q ss_pred ccccCCCCCCCCCCCCC
Q 001206 861 ATVLPTVNPMCSSPHQP 877 (1124)
Q Consensus 861 ~~~~~~~~~~~~~p~~~ 877 (1124)
-++.|+.+|.-.+|||.
T Consensus 70 G~~hPs~~Pfgp~phh~ 86 (212)
T PF15336_consen 70 GAAHPSANPFGPSPHHS 86 (212)
T ss_pred CCCCCCCCCCCCCCCCc
Confidence 34567777776666663
No 490
>PF12854 PPR_1: PPR repeat
Probab=34.10 E-value=71 Score=24.45 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001206 255 AATYINVAMMEEGLGNVHVALRYLHK 280 (1124)
Q Consensus 255 a~al~nLA~iy~~lGdyeeAle~lek 280 (1124)
..+|..|-..|.+.|++++|+++|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 46788899999999999999999875
No 491
>PF07710 P53_tetramer: P53 tetramerisation motif; InterPro: IPR010991 The p53 protein is a tetrameric transcription factor that plays a central role in the prevention of neoplastic transformation []. Oligomerization appears to be essential for the tumour suppressing activity of p53. p53 can be divided into different functional domains: an N-terminal transactivation domain, a proline-rich domain, a DNA-binding domain (IPR008967 from INTERPRO), a tetramerisation domain and a C-terminal regulatory region. The tetramerisation domain of human p53 extends from residues 325 to 356, and has a 4-helical bundle fold. The tetramerisation domain is essential for DNA binding, protein-protein interactions, post-translational modifications, and p53 degradation [].; GO: 0051262 protein tetramerization; PDB: 3Q06_B 1SAL_B 1OLH_B 1AIE_A 1PES_D 1SAK_D 1SAE_B 2J11_D 1PET_A 1OLG_A ....
Probab=33.91 E-value=23 Score=29.12 Aligned_cols=15 Identities=40% Similarity=0.831 Sum_probs=13.1
Q ss_pred cCceeEEEEEeeccc
Q 001206 1059 EGEKTFSILVRGRRN 1073 (1124)
Q Consensus 1059 ~~~~~~~~~~~~~~~ 1073 (1124)
+++..|.+-||||.|
T Consensus 6 ~D~E~ftL~VrGRe~ 20 (42)
T PF07710_consen 6 DDEEVFTLQVRGRER 20 (42)
T ss_dssp SCCCEEEEEEESHHH
T ss_pred CCCCEEEEEEecHHH
Confidence 567799999999987
No 492
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=33.72 E-value=3.9e+02 Score=34.74 Aligned_cols=25 Identities=36% Similarity=0.674 Sum_probs=13.9
Q ss_pred ccCCccCCCCCCCCCCCCCCCCccC
Q 001206 889 QPLPFMYPPYTQPQGVPTSTFPVTT 913 (1124)
Q Consensus 889 ~~~~~~~~p~~~~~~~~~~~~p~~~ 913 (1124)
+|=|++.||-++|+.+|.-.+|-.+
T Consensus 633 ~pPpg~~pP~~pPp~~Ppm~~pp~~ 657 (894)
T KOG0132|consen 633 PPPPGFMPPTSPPPGQPPMGIPPQT 657 (894)
T ss_pred CCCcccCCCCCCCCCCCCCCCCCCC
Confidence 3445555555666666665555533
No 493
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=33.35 E-value=2.5e+02 Score=25.77 Aligned_cols=61 Identities=13% Similarity=0.013 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHHHhc
Q 001206 124 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC-GPYHRMTAGAYSLLAVVLYHT 184 (1124)
Q Consensus 124 ~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~-G~d~p~~A~ay~nLG~ly~~l 184 (1124)
.....|..+...|...-..|+|++|+.+|.++++.+.... ...++..-..+.....-|...
T Consensus 1 ~~l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~R 62 (75)
T cd02684 1 ESLEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSR 62 (75)
T ss_pred CcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
No 494
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=33.08 E-value=3.8e+02 Score=24.85 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=30.7
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHHHHhHHHHHHHH
Q 001206 308 SLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA-AAWLEYFESKAFEQQEAAR 360 (1124)
Q Consensus 308 ~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a-~~~La~l~~k~~e~aeAl~ 360 (1124)
-..|+|++|+.+|..|++.|... .++..... ...+..+..+..+.++.+.
T Consensus 17 D~~gny~eA~~lY~~ale~~~~e---kn~~~k~~i~~K~~~~a~~yl~RAE~Lk 67 (75)
T cd02680 17 DEKGNAEEAIELYTEAVELCINT---SNETMDQALQTKLKQLARQALDRAEALK 67 (75)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHh---cChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999998762 33333222 2344444445555555443
No 495
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=33.05 E-value=2.4e+02 Score=31.61 Aligned_cols=107 Identities=15% Similarity=0.095 Sum_probs=62.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhc---CCCCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001206 180 VLYHTGDFNQATIYQQKALDINEREL---GLDHP-DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 255 (1124)
Q Consensus 180 ly~~lGdydeAle~~~KALeI~er~l---g~D~p-~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a 255 (1124)
-.+..|+|+.|++..+.||..-...- ..+-+ -++.-..+-+......|+.-+. .+++....+... ..-.....+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~~-~dmpd~vrA 169 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTTE-WDMPDEVRA 169 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhc-CCCChHHHH
Confidence 34567999999999999988622110 00111 1233445556666666663222 123333333221 212233456
Q ss_pred HHHHHHHHHHH---------HCCCHHHHHHHHHHHHHHHHHh
Q 001206 256 ATYINVAMMEE---------GLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 256 ~al~nLA~iy~---------~lGdyeeAle~lekALei~~k~ 288 (1124)
..|-.+|..+. ..++...|+.+|++|+.+..+.
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 66777788773 4568889999999999986443
No 496
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=33.02 E-value=4.5e+02 Score=34.96 Aligned_cols=26 Identities=35% Similarity=0.351 Sum_probs=22.3
Q ss_pred ccCCCCccccCCCCCCCCCCCCCCCC
Q 001206 855 TLHPRPATVLPTVNPMCSSPHQPYPS 880 (1124)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~p~~~~~~ 880 (1124)
|+|++|..++..-+|+-+++||.-..
T Consensus 118 tp~~~P~~~~n~~~~~~s~sp~tS~~ 143 (953)
T KOG2588|consen 118 TPQQSPLELLNQSNPALSSSPQTSTS 143 (953)
T ss_pred CCCCCcchhcccccccccCCccccCC
Confidence 99999999999999998877776544
No 497
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=32.61 E-value=1.1e+02 Score=24.22 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH--HHHHH
Q 001206 172 GAYSLLAVVLYHTGDFNQATIYQQ--KALDI 200 (1124)
Q Consensus 172 ~ay~nLG~ly~~lGdydeAle~~~--KALeI 200 (1124)
..++.+|..++.+|++++|+.+|+ -+..+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 357788999999999999999954 55443
No 498
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=32.58 E-value=2.5e+02 Score=25.22 Aligned_cols=61 Identities=16% Similarity=0.100 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHHHhc
Q 001206 124 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC-GPYHRMTAGAYSLLAVVLYHT 184 (1124)
Q Consensus 124 ~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~-G~d~p~~A~ay~nLG~ly~~l 184 (1124)
.....|..+...|..+-..|++++|+.+|.++++.+.... ...++.....+.....-|...
T Consensus 3 ~~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~r 64 (77)
T smart00745 3 DYLSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDR 64 (77)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
No 499
>PF12854 PPR_1: PPR repeat
Probab=32.36 E-value=76 Score=24.28 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001206 213 MKSYGDLAVFYYRLQHTELALKYVKR 238 (1124)
Q Consensus 213 a~ay~nLA~iy~~lGdyeeAley~ek 238 (1124)
..+|+.|-..|.+.|+.++|+++|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45788999999999999999999875
No 500
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=32.16 E-value=1.3e+03 Score=30.46 Aligned_cols=97 Identities=10% Similarity=-0.036 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 001206 185 GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM 264 (1124)
Q Consensus 185 GdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~i 264 (1124)
++-.++..+|++||.-+.-+ ..-.+.+......+..+...++++.-...|.+||.-...... .-......|.-+-..
T Consensus 164 ~~~~~v~~~~ekal~dy~~v--~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~ 240 (881)
T KOG0128|consen 164 EERKEVEELFEKALGDYNSV--PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVT 240 (881)
T ss_pred cchhHHHHHHHHHhcccccc--hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHH
Confidence 66777888888887643110 000112223333444556678899999999999986543322 122334455555555
Q ss_pred HHHCCCHHHHHHHHHHHHHH
Q 001206 265 EEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 265 y~~lGdyeeAle~lekALei 284 (1124)
|...-..++-+.++...|.+
T Consensus 241 ~l~n~~~~qv~a~~~~el~~ 260 (881)
T KOG0128|consen 241 YLCNVEQRQVIALFVRELKQ 260 (881)
T ss_pred HHHhHHHHHHHHHHHHHHhc
Confidence 55554456666666666654
Done!