Query 001206
Match_columns 1124
No_of_seqs 710 out of 3901
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 16:25:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nf1_A KLC 1, kinesin light ch 99.9 2.8E-23 9.5E-28 223.5 33.6 287 124-411 22-310 (311)
2 3edt_B KLC 2, kinesin light ch 99.9 1.3E-23 4.3E-28 222.1 24.8 271 139-409 11-282 (283)
3 3ulq_A Response regulator aspa 99.9 3E-21 1E-25 218.5 32.7 267 129-414 103-374 (383)
4 4a1s_A PINS, partner of inscut 99.9 3.7E-21 1.3E-25 217.4 30.3 276 128-413 85-377 (411)
5 3sf4_A G-protein-signaling mod 99.9 1.3E-20 4.4E-25 210.6 30.6 276 128-413 46-341 (406)
6 3ro2_A PINS homolog, G-protein 99.9 1.5E-20 5.2E-25 202.3 29.5 276 128-413 42-337 (338)
7 3q15_A PSP28, response regulat 99.9 8.5E-21 2.9E-25 215.1 28.5 269 128-414 100-371 (378)
8 4a1s_A PINS, partner of inscut 99.9 2.7E-20 9.4E-25 210.3 30.7 275 126-413 45-337 (411)
9 3ro2_A PINS homolog, G-protein 99.9 1.1E-19 3.7E-24 195.6 31.1 271 129-413 5-297 (338)
10 3sf4_A G-protein-signaling mod 99.9 6.8E-20 2.3E-24 204.7 29.9 271 129-413 9-301 (406)
11 3edt_B KLC 2, kinesin light ch 99.9 2.8E-19 9.5E-24 188.7 30.3 202 125-326 39-281 (283)
12 3nf1_A KLC 1, kinesin light ch 99.8 3.7E-18 1.3E-22 183.5 29.9 203 125-327 65-308 (311)
13 3uq3_A Heat shock protein STI1 99.8 3.5E-17 1.2E-21 171.0 28.8 239 127-413 3-241 (258)
14 4eqf_A PEX5-related protein; a 99.8 3.2E-18 1.1E-22 190.9 20.2 250 129-414 65-316 (365)
15 2pl2_A Hypothetical conserved 99.8 6E-18 2.1E-22 178.1 21.1 198 129-407 5-213 (217)
16 3u4t_A TPR repeat-containing p 99.8 1.7E-18 5.9E-23 183.9 15.1 245 129-412 3-254 (272)
17 1w3b_A UDP-N-acetylglucosamine 99.8 2E-17 6.7E-22 186.4 23.1 238 127-410 65-302 (388)
18 1w3b_A UDP-N-acetylglucosamine 99.8 5.5E-17 1.9E-21 182.7 25.4 236 129-410 135-370 (388)
19 1fch_A Peroxisomal targeting s 99.8 2.8E-17 9.5E-22 182.1 21.6 255 129-413 64-364 (368)
20 3n71_A Histone lysine methyltr 99.8 1.8E-17 6E-22 197.6 21.1 158 128-285 308-465 (490)
21 1hz4_A MALT regulatory protein 99.7 6.3E-16 2.2E-20 173.4 32.0 272 127-412 12-286 (373)
22 4g1t_A Interferon-induced prot 99.7 7.8E-17 2.7E-21 185.7 24.6 257 129-409 51-364 (472)
23 3vtx_A MAMA; tetratricopeptide 99.7 8.2E-17 2.8E-21 162.4 21.7 166 129-326 5-170 (184)
24 3hym_B Cell division cycle pro 99.7 2.1E-17 7E-22 179.2 17.6 240 131-410 58-301 (330)
25 1qqe_A Vesicular transport pro 99.7 9E-17 3.1E-21 176.8 22.8 191 130-327 38-229 (292)
26 2ifu_A Gamma-SNAP; membrane fu 99.7 7.9E-17 2.7E-21 178.5 21.7 183 141-330 3-188 (307)
27 3ulq_A Response regulator aspa 99.7 7.4E-16 2.5E-20 174.3 29.9 218 122-353 136-353 (383)
28 3n71_A Histone lysine methyltr 99.7 6.3E-17 2.1E-21 192.9 22.0 154 174-327 312-465 (490)
29 3hym_B Cell division cycle pro 99.7 1.1E-16 3.6E-21 173.6 21.5 244 130-411 23-268 (330)
30 2h6f_A Protein farnesyltransfe 99.7 7.8E-17 2.7E-21 186.2 21.3 243 122-410 90-350 (382)
31 4gyw_A UDP-N-acetylglucosamine 99.7 6.7E-17 2.3E-21 201.0 22.0 173 126-330 6-178 (723)
32 3q15_A PSP28, response regulat 99.7 3.9E-16 1.3E-20 176.8 26.5 203 123-331 135-370 (378)
33 2ho1_A Type 4 fimbrial biogene 99.7 3.5E-16 1.2E-20 164.5 24.2 206 128-411 36-241 (252)
34 3fp2_A TPR repeat-containing p 99.7 3E-16 1E-20 182.9 25.8 246 127-413 241-496 (537)
35 2q7f_A YRRB protein; TPR, prot 99.7 9.3E-17 3.2E-21 167.0 19.2 206 126-411 20-225 (243)
36 3ieg_A DNAJ homolog subfamily 99.7 4.1E-16 1.4E-20 170.3 25.0 244 129-410 37-303 (359)
37 1hz4_A MALT regulatory protein 99.7 6.4E-16 2.2E-20 173.4 27.2 274 128-413 52-327 (373)
38 3ieg_A DNAJ homolog subfamily 99.7 1.8E-15 6.1E-20 165.2 28.5 241 128-411 2-266 (359)
39 4eqf_A PEX5-related protein; a 99.7 1.1E-16 3.7E-21 178.5 19.1 258 128-413 98-361 (365)
40 2vq2_A PILW, putative fimbrial 99.7 1.7E-15 5.9E-20 154.8 26.3 207 126-410 5-213 (225)
41 3cv0_A Peroxisome targeting si 99.7 5.2E-16 1.8E-20 167.9 22.7 255 129-413 21-320 (327)
42 3vtx_A MAMA; tetratricopeptide 99.7 5.9E-16 2E-20 156.1 21.2 172 169-412 3-174 (184)
43 2y4t_A DNAJ homolog subfamily 99.7 1.1E-15 3.6E-20 174.5 25.4 244 129-410 60-326 (450)
44 3qky_A Outer membrane assembly 99.7 1.9E-15 6.3E-20 161.9 25.8 201 128-353 14-246 (261)
45 2y4t_A DNAJ homolog subfamily 99.7 7.6E-16 2.6E-20 175.7 22.3 249 123-411 20-289 (450)
46 2ifu_A Gamma-SNAP; membrane fu 99.7 1.2E-15 4E-20 169.0 23.2 187 130-326 37-223 (307)
47 4gyw_A UDP-N-acetylglucosamine 99.7 4E-16 1.4E-20 194.1 21.3 176 166-413 4-179 (723)
48 1qqe_A Vesicular transport pro 99.7 1.4E-15 4.8E-20 167.2 22.8 190 177-413 43-233 (292)
49 3u3w_A Transcriptional activat 99.7 9.5E-16 3.3E-20 168.0 20.8 193 128-330 74-270 (293)
50 4i17_A Hypothetical protein; T 99.7 1.9E-15 6.6E-20 157.9 22.2 182 129-343 7-221 (228)
51 4g1t_A Interferon-induced prot 99.7 9.3E-16 3.2E-20 176.7 21.7 246 143-411 25-279 (472)
52 3gw4_A Uncharacterized protein 99.7 7.6E-15 2.6E-19 148.8 25.9 179 139-330 2-180 (203)
53 1ouv_A Conserved hypothetical 99.7 3.1E-15 1.1E-19 160.6 24.2 224 128-411 5-254 (273)
54 2qfc_A PLCR protein; TPR, HTH, 99.7 1.2E-15 4.2E-20 167.1 20.8 195 128-330 74-270 (293)
55 2xpi_A Anaphase-promoting comp 99.7 2.4E-15 8.1E-20 178.4 24.1 251 127-411 303-582 (597)
56 3fp2_A TPR repeat-containing p 99.7 2.5E-15 8.6E-20 175.1 22.8 95 127-237 23-117 (537)
57 4abn_A Tetratricopeptide repea 99.7 4.8E-16 1.7E-20 183.5 16.0 170 127-326 100-287 (474)
58 2xpi_A Anaphase-promoting comp 99.7 6.7E-15 2.3E-19 174.5 25.8 245 131-409 274-546 (597)
59 2gw1_A Mitochondrial precursor 99.7 9.7E-16 3.3E-20 176.9 18.0 244 126-412 234-482 (514)
60 2pl2_A Hypothetical conserved 99.7 1.2E-15 4.2E-20 160.5 16.4 168 124-324 34-212 (217)
61 2gw1_A Mitochondrial precursor 99.7 7.2E-15 2.4E-19 169.7 24.2 250 127-410 4-335 (514)
62 3uq3_A Heat shock protein STI1 99.6 2.4E-14 8.3E-19 149.4 24.6 184 129-330 38-240 (258)
63 3ro3_A PINS homolog, G-protein 99.6 2.3E-14 7.9E-19 137.6 20.9 157 167-329 5-161 (164)
64 2q7f_A YRRB protein; TPR, prot 99.6 2.1E-14 7.3E-19 149.1 21.6 180 129-345 57-236 (243)
65 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.5E-14 5.3E-19 153.0 20.7 231 140-410 16-246 (275)
66 3as5_A MAMA; tetratricopeptide 99.6 1.5E-14 5.2E-19 142.6 19.0 169 127-327 6-174 (186)
67 3qww_A SET and MYND domain-con 99.6 8.3E-15 2.8E-19 172.1 18.8 133 130-262 299-431 (433)
68 3gw4_A Uncharacterized protein 99.6 4.3E-14 1.5E-18 143.3 21.5 173 127-306 24-196 (203)
69 1fch_A Peroxisomal targeting s 99.6 4.1E-14 1.4E-18 156.6 23.0 179 127-330 96-318 (368)
70 3ro3_A PINS homolog, G-protein 99.6 5.3E-14 1.8E-18 135.1 20.7 156 126-287 6-161 (164)
71 4abn_A Tetratricopeptide repea 99.6 1.4E-14 4.8E-19 171.0 20.0 194 147-411 79-290 (474)
72 3qww_A SET and MYND domain-con 99.6 1.8E-14 6.2E-19 169.2 19.2 124 181-304 308-431 (433)
73 4i17_A Hypothetical protein; T 99.6 2.1E-13 7.4E-18 142.3 24.9 198 171-411 7-212 (228)
74 3qwp_A SET and MYND domain-con 99.6 1.6E-14 5.3E-19 169.6 17.5 140 129-268 287-426 (429)
75 2qfc_A PLCR protein; TPR, HTH, 99.6 6.1E-14 2.1E-18 153.6 20.9 197 170-413 74-271 (293)
76 3u4t_A TPR repeat-containing p 99.6 3.2E-14 1.1E-18 151.0 18.0 187 128-343 73-262 (272)
77 4b4t_Q 26S proteasome regulato 99.6 9E-14 3.1E-18 158.3 22.9 235 132-413 7-250 (434)
78 3u3w_A Transcriptional activat 99.6 1.8E-13 6.3E-18 149.8 24.5 193 171-413 75-271 (293)
79 2h6f_A Protein farnesyltransfe 99.6 6.8E-14 2.3E-18 161.6 21.6 183 125-345 127-318 (382)
80 2yhc_A BAMD, UPF0169 lipoprote 99.6 2.3E-13 7.8E-18 143.5 23.8 177 129-325 4-212 (225)
81 3qky_A Outer membrane assembly 99.6 1.3E-13 4.3E-18 147.6 21.2 185 167-411 11-227 (261)
82 2ho1_A Type 4 fimbrial biogene 99.6 2.2E-13 7.4E-18 143.2 22.6 175 129-338 71-245 (252)
83 3qwp_A SET and MYND domain-con 99.6 2.7E-14 9.2E-19 167.5 17.2 133 179-311 295-427 (429)
84 3urz_A Uncharacterized protein 99.5 2.9E-13 1E-17 141.3 22.1 165 129-326 4-186 (208)
85 3cv0_A Peroxisome targeting si 99.5 5.8E-13 2E-17 144.0 24.3 177 128-329 54-272 (327)
86 2vq2_A PILW, putative fimbrial 99.5 9.2E-13 3.1E-17 134.5 23.5 176 129-339 42-219 (225)
87 4b4t_Q 26S proteasome regulato 99.5 1.2E-12 4.1E-17 149.0 26.0 202 129-337 55-256 (434)
88 3as5_A MAMA; tetratricopeptide 99.5 3E-13 1E-17 133.3 18.1 172 168-411 5-176 (186)
89 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.3E-12 1.1E-16 135.0 25.8 176 126-326 40-244 (275)
90 3mkr_A Coatomer subunit epsilo 99.5 1.5E-12 5E-17 144.0 22.9 166 128-326 64-229 (291)
91 4ga2_A E3 SUMO-protein ligase 99.5 3.8E-14 1.3E-18 141.0 8.3 146 135-312 3-149 (150)
92 2pzi_A Probable serine/threoni 99.5 1.2E-13 4.1E-18 170.5 13.1 162 140-326 402-563 (681)
93 2yhc_A BAMD, UPF0169 lipoprote 99.5 4.6E-12 1.6E-16 133.5 22.0 179 170-408 3-213 (225)
94 1ouv_A Conserved hypothetical 99.4 3.6E-12 1.2E-16 136.7 21.0 191 168-408 3-215 (273)
95 2xm6_A Protein corresponding t 99.4 2E-11 6.7E-16 143.4 27.2 158 128-325 38-215 (490)
96 4ga2_A E3 SUMO-protein ligase 99.4 3.2E-13 1.1E-17 134.3 10.0 141 176-345 2-143 (150)
97 3urz_A Uncharacterized protein 99.4 3E-12 1E-16 133.6 17.6 168 171-411 4-189 (208)
98 3qou_A Protein YBBN; thioredox 99.4 2.5E-12 8.6E-17 141.4 16.7 170 127-326 115-284 (287)
99 3mkr_A Coatomer subunit epsilo 99.4 1.4E-11 4.9E-16 136.1 22.8 177 128-344 100-277 (291)
100 2xm6_A Protein corresponding t 99.4 1.8E-11 6.1E-16 143.8 23.8 221 128-408 74-325 (490)
101 2vsy_A XCC0866; transferase, g 99.4 2.1E-12 7.3E-17 154.6 16.2 153 142-326 2-157 (568)
102 2pzi_A Probable serine/threoni 99.4 1.2E-12 4.3E-17 161.5 14.3 173 126-331 430-603 (681)
103 4gco_A Protein STI-1; structur 99.4 4.8E-12 1.6E-16 122.5 14.2 118 166-307 8-125 (126)
104 2r5s_A Uncharacterized protein 99.4 2.3E-12 7.9E-17 130.3 12.5 165 131-326 8-173 (176)
105 4gco_A Protein STI-1; structur 99.4 9.6E-12 3.3E-16 120.4 16.1 118 124-265 8-125 (126)
106 2ond_A Cleavage stimulation fa 99.4 2.1E-11 7.3E-16 134.5 20.5 199 141-413 69-275 (308)
107 3rjv_A Putative SEL1 repeat pr 99.3 1.7E-11 5.8E-16 128.6 17.9 164 127-326 16-197 (212)
108 1p5q_A FKBP52, FK506-binding p 99.3 1.6E-12 5.3E-17 146.7 9.8 162 142-327 126-295 (336)
109 4gcn_A Protein STI-1; structur 99.3 3.4E-11 1.2E-15 116.3 17.5 109 168-285 5-113 (127)
110 3rjv_A Putative SEL1 repeat pr 99.3 2.5E-11 8.6E-16 127.3 17.2 177 147-409 4-198 (212)
111 2fo7_A Synthetic consensus TPR 99.3 4.8E-11 1.7E-15 110.6 17.1 132 130-285 2-133 (136)
112 4gcn_A Protein STI-1; structur 99.3 5.5E-11 1.9E-15 114.9 18.0 108 210-326 5-112 (127)
113 2fo7_A Synthetic consensus TPR 99.3 3.6E-11 1.2E-15 111.5 15.6 131 172-326 2-132 (136)
114 1a17_A Serine/threonine protei 99.3 7E-11 2.4E-15 115.3 17.9 139 127-287 11-149 (166)
115 1a17_A Serine/threonine protei 99.3 1.1E-10 3.6E-15 114.1 18.6 139 169-329 11-149 (166)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.3 3.5E-11 1.2E-15 123.5 15.2 140 127-285 4-151 (213)
117 3gyz_A Chaperone protein IPGC; 99.3 9.8E-12 3.4E-16 125.2 10.3 104 166-285 31-134 (151)
118 1hh8_A P67PHOX, NCF-2, neutrop 99.3 3.9E-11 1.3E-15 123.1 13.8 137 171-326 6-150 (213)
119 3gyz_A Chaperone protein IPGC; 99.2 1.3E-11 4.5E-16 124.2 9.9 102 209-326 32-133 (151)
120 2vgx_A Chaperone SYCD; alterna 99.2 4.9E-11 1.7E-15 118.4 13.7 112 150-285 8-119 (148)
121 2ond_A Cleavage stimulation fa 99.2 1E-10 3.5E-15 129.0 17.6 185 146-408 33-232 (308)
122 1p5q_A FKBP52, FK506-binding p 99.2 1E-10 3.4E-15 131.9 17.8 145 125-285 143-295 (336)
123 3qou_A Protein YBBN; thioredox 99.2 6.1E-11 2.1E-15 130.3 15.6 171 168-408 114-284 (287)
124 2vsy_A XCC0866; transferase, g 99.2 5.3E-11 1.8E-15 142.6 15.6 156 184-411 2-160 (568)
125 3upv_A Heat shock protein STI1 99.2 2.6E-10 9.1E-15 108.0 17.0 123 169-309 2-124 (126)
126 3upv_A Heat shock protein STI1 99.2 4.6E-10 1.6E-14 106.3 17.9 123 127-267 2-124 (126)
127 2r5s_A Uncharacterized protein 99.2 4.3E-11 1.5E-15 121.0 8.8 166 172-408 7-173 (176)
128 2lni_A Stress-induced-phosphop 99.2 2.4E-10 8.2E-15 107.0 13.3 123 166-312 11-133 (133)
129 2vyi_A SGTA protein; chaperone 99.2 4.2E-10 1.4E-14 104.3 14.6 123 167-313 8-130 (131)
130 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 2.2E-11 7.6E-16 143.2 7.2 153 142-318 247-406 (457)
131 2vyi_A SGTA protein; chaperone 99.1 7.2E-10 2.5E-14 102.7 15.7 122 126-271 9-130 (131)
132 3sz7_A HSC70 cochaperone (SGT) 99.1 6.7E-10 2.3E-14 110.5 16.1 104 166-285 6-109 (164)
133 1wao_1 Serine/threonine protei 99.1 1.3E-11 4.5E-16 146.2 4.2 178 128-329 5-200 (477)
134 2lni_A Stress-induced-phosphop 99.1 5.1E-10 1.7E-14 104.8 14.1 122 125-270 12-133 (133)
135 2fbn_A 70 kDa peptidylprolyl i 99.1 5.1E-11 1.8E-15 122.3 7.8 154 138-317 13-176 (198)
136 4f3v_A ESX-1 secretion system 99.1 3E-10 1E-14 126.1 14.3 214 129-411 7-240 (282)
137 2e2e_A Formate-dependent nitri 99.1 1.8E-10 6.2E-15 115.4 11.2 123 139-285 20-145 (177)
138 3dra_A Protein farnesyltransfe 99.1 4.9E-09 1.7E-13 117.7 23.7 237 129-407 32-286 (306)
139 3rkv_A Putative peptidylprolyl 99.1 4.8E-10 1.7E-14 111.3 13.6 129 168-311 8-146 (162)
140 3rkv_A Putative peptidylprolyl 99.1 7E-10 2.4E-14 110.1 14.8 108 127-242 9-126 (162)
141 2xcb_A PCRH, regulatory protei 99.1 3.4E-10 1.2E-14 110.5 11.8 103 167-285 14-116 (142)
142 2c2l_A CHIP, carboxy terminus 99.1 2.2E-10 7.5E-15 125.7 11.4 101 129-245 4-104 (281)
143 3sz7_A HSC70 cochaperone (SGT) 99.1 8.1E-10 2.8E-14 109.9 14.5 103 125-243 7-109 (164)
144 2vgx_A Chaperone SYCD; alterna 99.1 2.2E-09 7.4E-14 106.5 17.5 105 123-243 15-119 (148)
145 2fbn_A 70 kDa peptidylprolyl i 99.1 6.3E-10 2.2E-14 114.2 13.7 131 127-275 36-176 (198)
146 3e4b_A ALGK; tetratricopeptide 99.1 1.4E-09 4.8E-14 127.5 17.5 222 129-408 141-387 (452)
147 1xi4_A Clathrin heavy chain; a 99.1 7.6E-09 2.6E-13 133.4 25.1 223 135-410 1055-1311(1630)
148 3e4b_A ALGK; tetratricopeptide 99.1 1.9E-10 6.6E-15 134.8 9.9 28 257-284 178-208 (452)
149 1na0_A Designed protein CTPR3; 99.1 2.2E-09 7.4E-14 98.6 14.9 118 170-311 8-125 (125)
150 3q49_B STIP1 homology and U bo 99.1 1.7E-09 6E-14 102.8 14.7 105 167-287 5-109 (137)
151 2hr2_A Hypothetical protein; a 99.1 2E-09 6.8E-14 109.8 15.6 117 128-245 10-134 (159)
152 2ooe_A Cleavage stimulation fa 99.1 3.4E-09 1.2E-13 125.6 19.9 211 129-413 272-497 (530)
153 2hr2_A Hypothetical protein; a 99.1 1.9E-09 6.5E-14 109.9 15.1 118 170-288 10-135 (159)
154 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 1E-09 3.5E-14 129.0 14.9 136 126-277 265-407 (457)
155 1na0_A Designed protein CTPR3; 99.0 5.8E-09 2E-13 95.7 16.3 117 129-269 9-125 (125)
156 2e2e_A Formate-dependent nitri 99.0 5.5E-10 1.9E-14 111.9 10.1 122 181-326 20-144 (177)
157 1elr_A TPR2A-domain of HOP; HO 99.0 3.7E-09 1.2E-13 98.2 14.9 108 169-285 2-109 (131)
158 2xev_A YBGF; tetratricopeptide 99.0 6.1E-09 2.1E-13 97.9 16.5 104 172-285 3-106 (129)
159 2c2l_A CHIP, carboxy terminus 99.0 9.5E-10 3.3E-14 120.6 12.6 102 170-287 3-104 (281)
160 2xcb_A PCRH, regulatory protei 99.0 3.8E-09 1.3E-13 103.0 14.9 105 124-244 13-117 (142)
161 2xev_A YBGF; tetratricopeptide 99.0 7.4E-09 2.5E-13 97.4 16.2 119 215-348 4-122 (129)
162 1ihg_A Cyclophilin 40; ppiase 99.0 2.6E-09 8.9E-14 122.5 15.4 136 126-277 220-363 (370)
163 1ihg_A Cyclophilin 40; ppiase 99.0 2.3E-09 7.7E-14 123.0 14.6 134 170-319 222-363 (370)
164 1xi4_A Clathrin heavy chain; a 99.0 1.8E-08 6.1E-13 130.0 24.1 237 127-402 1103-1378(1630)
165 3q49_B STIP1 homology and U bo 99.0 1.2E-08 4.2E-13 96.9 17.3 102 128-245 8-109 (137)
166 1wao_1 Serine/threonine protei 99.0 3.2E-11 1.1E-15 142.9 -1.1 130 168-321 3-134 (477)
167 1elr_A TPR2A-domain of HOP; HO 99.0 7.3E-09 2.5E-13 96.1 15.3 106 128-242 3-108 (131)
168 1elw_A TPR1-domain of HOP; HOP 99.0 9.9E-09 3.4E-13 93.4 15.2 114 128-265 3-116 (118)
169 1elw_A TPR1-domain of HOP; HOP 98.9 8.9E-09 3E-13 93.7 13.9 114 170-307 3-116 (118)
170 2if4_A ATFKBP42; FKBP-like, al 98.9 1.4E-09 4.9E-14 122.7 9.2 144 126-285 176-329 (338)
171 2dba_A Smooth muscle cell asso 98.9 5.5E-09 1.9E-13 99.8 11.9 106 167-285 24-129 (148)
172 2ooe_A Cleavage stimulation fa 98.9 2.6E-08 8.8E-13 118.0 20.2 185 146-408 255-454 (530)
173 2if4_A ATFKBP42; FKBP-like, al 98.9 1.4E-09 4.9E-14 122.7 9.0 142 169-326 177-328 (338)
174 1hxi_A PEX5, peroxisome target 98.9 6.4E-09 2.2E-13 99.6 11.6 95 132-242 20-114 (121)
175 2dba_A Smooth muscle cell asso 98.9 1.2E-08 4.2E-13 97.3 13.0 103 127-242 26-128 (148)
176 1hxi_A PEX5, peroxisome target 98.9 7.3E-09 2.5E-13 99.2 10.7 98 172-285 18-115 (121)
177 1b89_A Protein (clathrin heavy 98.8 2E-09 7E-14 126.0 7.1 206 130-410 33-238 (449)
178 2kck_A TPR repeat; tetratricop 98.8 5.3E-09 1.8E-13 94.5 7.5 100 169-284 4-106 (112)
179 3q7a_A Farnesyltransferase alp 98.8 2.1E-07 7.1E-12 106.3 21.1 235 137-410 62-333 (349)
180 4f3v_A ESX-1 secretion system 98.8 1.6E-08 5.6E-13 112.1 11.2 181 124-326 35-237 (282)
181 3k9i_A BH0479 protein; putativ 98.7 1.5E-08 5.2E-13 95.4 8.0 90 183-285 2-91 (117)
182 2kck_A TPR repeat; tetratricop 98.7 1.9E-08 6.5E-13 90.9 7.8 99 130-242 7-106 (112)
183 3k9i_A BH0479 protein; putativ 98.7 2E-08 6.9E-13 94.5 7.6 89 141-242 2-90 (117)
184 3mv2_B Coatomer subunit epsilo 98.6 1.5E-06 5.3E-11 97.6 21.3 189 131-345 102-296 (310)
185 1dce_A Protein (RAB geranylger 98.6 4.5E-07 1.5E-11 109.9 17.5 171 138-345 37-235 (567)
186 2l6j_A TPR repeat-containing p 98.6 3E-08 1E-12 90.4 4.1 98 170-280 3-103 (111)
187 1b89_A Protein (clathrin heavy 98.5 2E-07 6.9E-12 109.2 11.1 223 129-403 61-306 (449)
188 1zu2_A Mitochondrial import re 98.5 2E-07 6.9E-12 94.9 9.5 86 141-242 14-120 (158)
189 2l6j_A TPR repeat-containing p 98.5 5.1E-08 1.7E-12 88.9 4.5 98 128-238 3-103 (111)
190 3dss_A Geranylgeranyl transfer 98.5 6.9E-06 2.4E-10 93.2 22.8 172 138-346 38-237 (331)
191 1na3_A Designed protein CTPR2; 98.5 6.9E-07 2.4E-11 78.4 11.3 87 167-269 5-91 (91)
192 1zu2_A Mitochondrial import re 98.5 2.4E-07 8.2E-12 94.4 8.3 87 183-285 14-121 (158)
193 3dra_A Protein farnesyltransfe 98.4 1.2E-06 4.2E-11 98.3 13.8 166 128-325 66-249 (306)
194 1na3_A Designed protein CTPR2; 98.4 2.3E-06 8E-11 75.0 12.3 85 127-227 7-91 (91)
195 2kat_A Uncharacterized protein 98.4 1.4E-06 4.7E-11 81.1 11.3 83 147-245 3-85 (115)
196 1klx_A Cysteine rich protein B 98.4 2.2E-06 7.5E-11 84.0 12.8 110 143-284 9-126 (138)
197 3dss_A Geranylgeranyl transfer 98.3 2.5E-05 8.5E-10 88.6 21.9 150 145-326 90-267 (331)
198 2kat_A Uncharacterized protein 98.3 3.1E-06 1.1E-10 78.7 12.1 83 189-287 3-85 (115)
199 1dce_A Protein (RAB geranylger 98.3 2.6E-06 8.9E-11 103.3 14.2 156 128-315 62-244 (567)
200 1klx_A Cysteine rich protein B 98.3 3.9E-06 1.3E-10 82.3 12.0 110 185-326 9-126 (138)
201 3mv2_B Coatomer subunit epsilo 98.3 1.7E-05 5.8E-10 89.1 17.9 134 171-327 100-241 (310)
202 3ma5_A Tetratricopeptide repea 98.2 3.6E-06 1.2E-10 77.3 9.9 71 167-245 3-73 (100)
203 3ma5_A Tetratricopeptide repea 98.2 6.9E-06 2.4E-10 75.4 11.2 71 209-287 3-73 (100)
204 2kc7_A BFR218_protein; tetratr 98.1 6.8E-06 2.3E-10 73.9 7.9 86 133-242 4-90 (99)
205 2kc7_A BFR218_protein; tetratr 98.0 8E-06 2.7E-10 73.5 7.4 88 174-285 3-91 (99)
206 4e6h_A MRNA 3'-END-processing 98.0 0.00036 1.2E-08 86.4 23.4 232 146-411 326-573 (679)
207 3ly7_A Transcriptional activat 97.9 0.00015 5E-09 83.3 16.2 141 126-285 193-340 (372)
208 2v5f_A Prolyl 4-hydroxylase su 97.8 0.00014 4.8E-09 67.7 12.1 83 129-220 5-87 (104)
209 3q7a_A Farnesyltransferase alp 97.8 0.00011 3.6E-09 84.0 13.1 153 129-313 88-258 (349)
210 2v5f_A Prolyl 4-hydroxylase su 97.8 0.00037 1.3E-08 64.8 13.9 85 255-345 5-89 (104)
211 4e6h_A MRNA 3'-END-processing 97.7 0.00042 1.4E-08 85.8 18.0 175 129-326 343-533 (679)
212 3txn_A 26S proteasome regulato 97.7 0.0036 1.2E-07 72.5 24.4 189 129-328 19-212 (394)
213 3ly7_A Transcriptional activat 97.6 0.00059 2E-08 78.2 15.5 135 173-326 198-339 (372)
214 4g26_A Pentatricopeptide repea 97.3 0.0063 2.2E-07 72.5 19.9 161 137-325 34-203 (501)
215 3u64_A Protein TP_0956; tetrat 97.3 0.0027 9.2E-08 70.5 15.3 107 165-285 146-270 (301)
216 3txn_A 26S proteasome regulato 97.3 0.022 7.4E-07 66.0 23.5 150 172-330 20-172 (394)
217 3u64_A Protein TP_0956; tetrat 97.2 0.013 4.3E-07 65.2 18.8 103 209-326 148-269 (301)
218 3bee_A Putative YFRE protein; 97.2 0.0018 6.2E-08 59.6 10.3 67 168-242 3-72 (93)
219 3ffl_A Anaphase-promoting comp 97.2 0.004 1.4E-07 63.5 13.6 109 130-238 21-147 (167)
220 3ffl_A Anaphase-promoting comp 97.2 0.0038 1.3E-07 63.7 13.2 127 172-307 21-165 (167)
221 1pc2_A Mitochondria fission pr 97.0 0.01 3.5E-07 59.9 14.6 83 145-242 14-100 (152)
222 3bee_A Putative YFRE protein; 97.0 0.0022 7.5E-08 59.0 9.0 67 211-285 4-73 (93)
223 1pc2_A Mitochondria fission pr 96.8 0.012 4E-07 59.5 13.1 81 253-345 30-114 (152)
224 4b4t_P 26S proteasome regulato 96.6 0.097 3.3E-06 61.4 21.2 115 212-330 136-251 (445)
225 4g26_A Pentatricopeptide repea 96.6 0.062 2.1E-06 64.0 19.5 131 173-324 28-167 (501)
226 4b4t_R RPN7, 26S proteasome re 95.6 0.18 6E-06 58.9 16.6 111 168-285 128-238 (429)
227 2uy1_A Cleavage stimulation fa 95.5 0.83 2.8E-05 54.0 22.0 214 146-410 196-415 (493)
228 1nzn_A CGI-135 protein, fissio 95.2 0.52 1.8E-05 46.0 15.6 87 144-242 16-103 (126)
229 4b4t_R RPN7, 26S proteasome re 94.9 0.19 6.4E-06 58.6 13.6 109 211-326 129-237 (429)
230 2uy1_A Cleavage stimulation fa 94.7 0.73 2.5E-05 54.5 18.1 162 129-323 213-380 (493)
231 4b4t_P 26S proteasome regulato 94.4 0.76 2.6E-05 53.8 17.2 114 127-245 135-250 (445)
232 1nzn_A CGI-135 protein, fissio 94.1 0.85 2.9E-05 44.5 14.0 70 212-285 34-104 (126)
233 3mkq_A Coatomer beta'-subunit; 93.7 0.9 3.1E-05 55.5 16.9 46 181-239 662-707 (814)
234 2ff4_A Probable regulatory pro 93.2 1.1 3.8E-05 51.4 15.5 114 129-250 115-242 (388)
235 3lpz_A GET4 (YOR164C homolog); 92.8 15 0.00052 41.4 27.5 185 137-327 20-217 (336)
236 2ff4_A Probable regulatory pro 92.5 0.92 3.2E-05 52.0 13.5 105 222-334 124-242 (388)
237 1ya0_A SMG-7 transcript varian 92.5 2.3 7.9E-05 50.6 17.1 63 171-241 152-214 (497)
238 4h7y_A Dual specificity protei 92.4 0.78 2.7E-05 46.2 10.8 104 173-285 15-124 (161)
239 3mkq_A Coatomer beta'-subunit; 92.1 0.85 2.9E-05 55.8 13.2 68 138-237 608-676 (814)
240 4fhn_B Nucleoporin NUP120; pro 91.8 0.63 2.2E-05 60.8 12.2 102 215-320 844-961 (1139)
241 1y8m_A FIS1; mitochondria, unk 91.7 1.7 5.9E-05 43.2 12.3 89 105-200 15-106 (144)
242 4gns_B Protein CSD3, chitin bi 91.3 0.98 3.4E-05 56.4 12.5 120 187-323 265-397 (754)
243 2wpv_A GET4, UPF0363 protein Y 91.1 22 0.00077 39.6 27.1 185 137-327 21-218 (312)
244 4h7y_A Dual specificity protei 91.0 0.77 2.6E-05 46.3 9.0 98 220-326 20-123 (161)
245 3kae_A CDC27, possible protein 90.8 2.7 9.1E-05 43.2 12.8 98 174-284 36-143 (242)
246 4b4t_S RPN3, 26S proteasome re 90.8 0.29 9.9E-06 58.3 6.8 145 138-285 145-300 (523)
247 4gns_B Protein CSD3, chitin bi 90.5 2 6.9E-05 53.6 14.4 120 145-281 265-397 (754)
248 3o48_A Mitochondria fission 1 90.5 1.2 4.2E-05 43.8 9.9 90 104-200 15-107 (134)
249 1y8m_A FIS1; mitochondria, unk 90.1 4.2 0.00014 40.5 13.4 70 169-242 37-106 (144)
250 1ya0_A SMG-7 transcript varian 89.1 0.82 2.8E-05 54.5 8.9 64 255-326 152-215 (497)
251 3o48_A Mitochondria fission 1 88.8 3.5 0.00012 40.6 11.5 80 254-345 39-121 (134)
252 3kae_A CDC27, possible protein 87.4 8.4 0.00029 39.6 13.5 95 135-242 39-143 (242)
253 4b4t_O 26S proteasome regulato 87.3 17 0.00057 41.7 18.2 108 178-285 83-199 (393)
254 4b4t_S RPN3, 26S proteasome re 85.9 1.2 4.1E-05 53.1 7.7 143 181-326 146-299 (523)
255 3spa_A Mtrpol, DNA-directed RN 85.9 4.9 0.00017 51.7 13.5 106 167-283 123-229 (1134)
256 2wpv_A GET4, UPF0363 protein Y 85.4 9.5 0.00032 42.7 14.3 124 172-321 34-158 (312)
257 3mkq_B Coatomer subunit alpha; 85.1 5.9 0.0002 40.8 11.5 102 138-281 14-115 (177)
258 4b4t_O 26S proteasome regulato 85.1 6 0.00021 45.4 13.0 133 190-327 58-199 (393)
259 3spa_A Mtrpol, DNA-directed RN 85.1 5.2 0.00018 51.4 13.2 106 209-325 123-229 (1134)
260 2o8p_A 14-3-3 domain containin 84.8 45 0.0015 35.6 22.2 181 134-327 11-198 (227)
261 3uzd_A 14-3-3 protein gamma; s 84.6 48 0.0017 35.8 23.6 185 131-331 6-208 (248)
262 1jgn_B PAIP2, polyadenylate-bi 84.3 0.4 1.4E-05 32.9 1.5 16 925-940 4-19 (26)
263 4fhn_B Nucleoporin NUP120; pro 84.3 29 0.00099 45.3 20.3 102 132-237 845-962 (1139)
264 1o9d_A 14-3-3-like protein C; 82.9 58 0.002 35.4 22.9 187 130-329 9-210 (260)
265 3mkq_B Coatomer subunit alpha; 82.0 8.3 0.00028 39.7 11.0 100 182-323 16-115 (177)
266 3iqu_A 14-3-3 protein sigma; s 79.3 72 0.0025 34.2 24.1 187 130-332 9-211 (236)
267 3lpz_A GET4 (YOR164C homolog); 78.3 94 0.0032 35.0 26.6 150 129-285 55-217 (336)
268 2br9_A 14-3-3E, 14-3-3 protein 77.5 80 0.0027 33.8 24.0 62 271-332 146-208 (234)
269 2npm_A 14-3-3 domain containin 76.4 92 0.0031 33.9 23.2 190 129-331 28-232 (260)
270 2o8p_A 14-3-3 domain containin 75.0 18 0.00062 38.6 11.3 94 150-243 99-198 (227)
271 2br9_A 14-3-3E, 14-3-3 protein 74.5 25 0.00084 37.7 12.3 56 188-243 147-203 (234)
272 3uzd_A 14-3-3 protein gamma; s 74.2 30 0.001 37.4 12.9 56 188-243 148-204 (248)
273 3t5v_B Nuclear mRNA export pro 72.5 1.2E+02 0.004 35.6 18.5 69 175-244 180-252 (455)
274 1o9d_A 14-3-3-like protein C; 72.5 28 0.00096 37.9 12.3 55 188-242 152-207 (260)
275 2r17_C Vacuolar protein sortin 72.3 1.2E+02 0.0042 33.5 19.1 156 171-331 99-272 (298)
276 3ubw_A 14-3-3E, 14-3-3 protein 71.2 1.2E+02 0.0042 32.9 24.1 185 130-330 32-232 (261)
277 3ubw_A 14-3-3E, 14-3-3 protein 70.9 33 0.0011 37.3 12.3 56 188-243 173-229 (261)
278 3rau_A Tyrosine-protein phosph 70.2 57 0.002 37.0 14.9 36 295-330 250-285 (363)
279 3re2_A Predicted protein; meni 68.4 51 0.0018 37.4 13.3 93 191-288 235-329 (472)
280 2npm_A 14-3-3 domain containin 68.0 32 0.0011 37.4 11.5 55 188-243 173-228 (260)
281 4gq4_A Menin; tumor suppressor 67.8 1.3E+02 0.0046 34.8 16.7 74 169-245 260-335 (489)
282 4ady_A RPN2, 26S proteasome re 66.3 2.1E+02 0.0073 36.6 20.1 149 168-323 67-256 (963)
283 3iqu_A 14-3-3 protein sigma; s 65.2 1.3E+02 0.0045 32.2 15.4 58 229-286 149-207 (236)
284 3r9m_A BRO1 domain-containing 65.2 55 0.0019 37.3 13.5 32 296-327 252-283 (376)
285 3u84_A Menin; MLL, JUND, ledgf 64.9 61 0.0021 37.4 13.2 74 212-288 276-351 (550)
286 3re2_A Predicted protein; meni 64.7 67 0.0023 36.5 13.3 74 169-245 253-328 (472)
287 1zb1_A BRO1 protein; AIP1, BRO 64.5 40 0.0014 38.5 12.3 32 298-329 258-289 (392)
288 4gq4_A Menin; tumor suppressor 60.5 87 0.003 36.3 13.5 80 255-337 262-344 (489)
289 3u84_A Menin; MLL, JUND, ledgf 60.5 83 0.0028 36.4 13.2 72 170-244 276-349 (550)
290 1zb1_A BRO1 protein; AIP1, BRO 58.8 35 0.0012 39.1 10.4 17 186-202 144-160 (392)
291 1zbp_A Hypothetical protein VP 57.3 68 0.0023 35.1 11.6 129 264-413 6-134 (273)
292 3efz_A 14-3-3 protein; 14-3-3, 56.7 44 0.0015 36.5 10.0 94 149-242 118-226 (268)
293 3efz_A 14-3-3 protein; 14-3-3, 55.1 70 0.0024 34.9 11.2 56 229-284 168-226 (268)
294 4a5x_A MITD1, MIT domain-conta 54.7 45 0.0015 30.1 8.2 43 121-163 8-50 (86)
295 3ktp_B Trinucleotide repeat-co 54.2 5.4 0.00019 27.2 1.5 14 932-945 8-21 (22)
296 1zbp_A Hypothetical protein VP 48.4 1.6E+02 0.0056 32.1 12.9 120 138-285 6-130 (273)
297 4gq2_M Nucleoporin NUP120; bet 48.1 45 0.0016 42.6 9.9 71 215-285 842-927 (950)
298 4ady_A RPN2, 26S proteasome re 47.2 1.5E+02 0.0053 37.9 14.2 175 126-324 410-587 (963)
299 3c3r_A Programmed cell death 6 46.6 1.6E+02 0.0053 33.5 13.1 32 297-328 275-306 (380)
300 2r17_C Vacuolar protein sortin 45.2 3.5E+02 0.012 29.8 18.4 154 130-288 100-271 (298)
301 1qsa_A Protein (soluble lytic 44.0 1.6E+02 0.0055 35.7 13.4 131 132-283 217-347 (618)
302 1qsa_A Protein (soluble lytic 41.7 2.1E+02 0.0071 34.8 13.8 128 176-324 219-346 (618)
303 3r9m_A BRO1 domain-containing 41.2 4.3E+02 0.015 29.8 15.8 37 125-161 110-158 (376)
304 2cpt_A SKD1 protein, vacuolar 40.2 93 0.0032 29.7 8.3 37 127-163 16-52 (117)
305 2xs1_A Programmed cell death 6 40.0 1.3E+02 0.0045 37.0 12.0 34 296-329 259-292 (704)
306 2vkj_A TM1634; membrane protei 39.7 92 0.0031 28.5 7.5 49 127-181 51-100 (106)
307 2cpt_A SKD1 protein, vacuolar 38.8 2E+02 0.0068 27.3 10.4 28 304-331 25-52 (117)
308 3esl_A Checkpoint serine/threo 37.1 3.8E+02 0.013 27.9 16.1 86 234-326 58-144 (202)
309 3rau_A Tyrosine-protein phosph 37.0 3.6E+02 0.012 30.3 14.1 40 122-161 110-158 (363)
310 4a5x_A MITD1, MIT domain-conta 36.6 2.3E+02 0.008 25.3 10.2 40 299-338 18-58 (86)
311 2wm9_A Dedicator of cytokinesi 35.3 1.9E+02 0.0065 33.4 11.7 29 214-242 12-40 (428)
312 2w2u_A Hypothetical P60 katani 34.9 64 0.0022 28.9 5.9 36 127-162 17-52 (83)
313 2v6y_A AAA family ATPase, P60 33.8 66 0.0022 28.7 5.8 35 128-162 10-44 (83)
314 3t5v_B Nuclear mRNA export pro 33.7 66 0.0022 37.7 7.4 73 255-328 176-252 (455)
315 4gq2_M Nucleoporin NUP120; bet 32.2 2.6E+02 0.0087 35.7 13.1 70 173-242 842-926 (950)
316 2crb_A Nuclear receptor bindin 32.2 74 0.0025 29.3 5.8 36 253-288 13-48 (97)
317 4aez_C MAD3, mitotic spindle c 31.2 1.5E+02 0.0052 31.4 9.0 82 233-326 97-179 (223)
318 2rpa_A Katanin P60 ATPase-cont 30.6 1.3E+02 0.0044 26.8 7.0 34 300-333 15-48 (78)
319 2w2u_A Hypothetical P60 katani 30.3 80 0.0027 28.2 5.8 30 259-288 23-52 (83)
320 3mkr_B Coatomer subunit alpha; 29.8 6.2E+02 0.021 28.2 15.0 161 219-408 22-227 (320)
321 2wb7_A PT26-6P; extra chromoso 29.5 2.6E+02 0.009 33.0 11.2 49 230-284 449-497 (526)
322 3c3r_A Programmed cell death 6 29.3 5.4E+02 0.019 29.0 14.0 38 123-160 136-182 (380)
323 2v6y_A AAA family ATPase, P60 28.8 88 0.003 27.9 5.8 29 260-288 16-44 (83)
324 1wfd_A Hypothetical protein 15 27.9 2.9E+02 0.0099 25.0 9.2 70 253-322 13-84 (93)
325 2wb7_A PT26-6P; extra chromoso 26.5 3.4E+02 0.011 32.2 11.4 48 188-241 449-496 (526)
326 2qx5_A Nucleoporin NIC96; mRNA 26.3 9.6E+02 0.033 29.3 17.7 210 137-404 302-563 (661)
327 2v6x_A Vacuolar protein sortin 25.8 1.1E+02 0.0038 27.1 5.9 36 127-162 11-46 (85)
328 2wm9_A Dedicator of cytokinesi 24.7 2.8E+02 0.0097 31.9 10.7 111 170-285 10-138 (428)
329 2crb_A Nuclear receptor bindin 24.7 4.2E+02 0.014 24.5 10.0 46 295-340 13-59 (97)
330 2wvi_A Mitotic checkpoint seri 24.5 1.4E+02 0.0048 30.2 7.0 82 233-326 43-125 (164)
331 2yin_A DOCK2, dedicator of cyt 23.5 4.8E+02 0.016 30.1 12.3 118 146-267 12-145 (436)
332 2xs1_A Programmed cell death 6 23.0 4.8E+02 0.017 32.0 12.9 38 123-160 121-167 (704)
333 1olg_A Tumor suppressor P53 (o 21.9 34 0.0012 27.0 1.4 13 1061-1073 7-19 (42)
334 3t5x_A PCI domain-containing p 21.7 1.2E+02 0.004 31.5 6.0 62 124-188 9-70 (203)
335 1jh4_B PAIP1, polyadenylate-bi 21.4 42 0.0014 23.6 1.6 16 809-824 3-18 (26)
336 2rpa_A Katanin P60 ATPase-cont 21.0 1.2E+02 0.004 27.1 4.9 33 131-163 14-46 (78)
337 3esl_A Checkpoint serine/threo 20.6 7.3E+02 0.025 25.8 13.8 86 150-242 58-144 (202)
No 1
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.8e-23 Score=223.52 Aligned_cols=287 Identities=21% Similarity=0.207 Sum_probs=231.2
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001206 124 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 203 (1124)
Q Consensus 124 ~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er 203 (1124)
.....+..++.+|..++..|++++|+.+|++++.+.....+.+++..+.++..+|.+|..+|++++|+.++++++.+.++
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999998877788999999999999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001206 204 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 283 (1124)
Q Consensus 204 ~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALe 283 (1124)
..+.+++....++.++|.+|..+|++++|+.+|++++.+.+...+.+++....++.++|.+|..+|++++|+.+|++++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 001206 284 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK-LGPDDLRTQDAAAWLEYFESKAFEQQEAARNG 362 (1124)
Q Consensus 284 i~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~-lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~ 362 (1124)
+..+..+.+++....++..+|.+|..+|++++|+.++++++++.... ++..+.........+..+........ .....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 260 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQK-DGTSF 260 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC--------CCS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchh-hHHHH
Confidence 99888888889999999999999999999999999999999986552 12222221111111111111111111 00000
Q ss_pred cCC-CchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 363 TRK-PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 363 ~~~-~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
... .........++....++..+|.+|..+|++++|+.+|++++++.++
T Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 000 1111122345567889999999999999999999999999998764
No 2
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.92 E-value=1.3e-23 Score=222.12 Aligned_cols=271 Identities=21% Similarity=0.213 Sum_probs=218.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001206 139 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 218 (1124)
Q Consensus 139 yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~n 218 (1124)
....|++++|+.+|++++.++.+..+.+++..+.++..||.+|..+|++++|+.+|++++.+.++..+.+++....++.+
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34679999999999999999999988888999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 001206 219 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 298 (1124)
Q Consensus 219 LA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~ 298 (1124)
+|.+|..+|++++|+.+|++++.+.+...+.+++....++.++|.+|..+|++++|+.+|++++.+.....+.+++....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999999999999999988888999999999999999999999999999999999999888888999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCc
Q 001206 299 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL-GPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLS 377 (1124)
Q Consensus 299 a~~nLA~ly~~lGd~eeAle~lekALei~~k~l-G~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~ 377 (1124)
++..+|.+|..+|++++|+.++++++++..... +..+.........+............+................++.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 999999999999999999999999999866532 2222211112221211111000000000000000001111224456
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 378 VSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 409 (1124)
Q Consensus 378 vaell~~Lg~~y~~qGdyeeAl~~yekALkL~ 409 (1124)
...++..+|.+|..+|++++|+.+|++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 77889999999999999999999999998753
No 3
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.89 E-value=3e-21 Score=218.54 Aligned_cols=267 Identities=11% Similarity=0.026 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
...++.+|..++..|++++|+.+|++|+.+.... ++....+.++..+|.+|..+|++++|+.++++|+.++++. +..
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~ 179 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAY 179 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccc
Confidence 3456668999999999999999999999987654 4556688999999999999999999999999999998774 222
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
.+..+.++.+||.+|..+|++++|+.+|++|+++.... .+.+..+.++.++|.+|..+|++++|+.+|++|+++.+..
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 56788999999999999999999999999999998875 3567788999999999999999999999999999998765
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh-----HHHHHHHHhcc
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA-----FEQQEAARNGT 363 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~-----~e~aeAl~~~~ 363 (1124)
.+.+..+.++.++|.+|..+|++++|+.++++++++..... ++........|+.+.... ...+..+....
T Consensus 258 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 258 --NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG---DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp --TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred --ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 23256789999999999999999999999999999987753 233222233344333222 22222222111
Q ss_pred CCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhcc
Q 001206 364 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQ 414 (1124)
Q Consensus 364 ~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~~ 414 (1124)
........++..||.+|..+|++++|+.+|++++++.+++..
T Consensus 333 ---------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 333 ---------MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred ---------cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 222356678999999999999999999999999999999874
No 4
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.89 E-value=3.7e-21 Score=217.36 Aligned_cols=276 Identities=13% Similarity=0.084 Sum_probs=226.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..++.+|.+++..|++++|+.+|++++.+.... .+++..+.++..+|.+|..+|++++|+.+|++++.+..+. .
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 160 (411)
T 4a1s_A 85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM--NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--G 160 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--h
Confidence 46788999999999999999999999999998776 4567888999999999999999999999999999998875 4
Q ss_pred CChhHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 001206 208 DHPDTMKSYGDLAVFYYRLQH-----------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 270 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGd-----------------yeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGd 270 (1124)
+.+....++.++|.+|..+|+ +++|+++|++++.+..... +++..+.++.++|.+|..+|+
T Consensus 161 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~ 238 (411)
T 4a1s_A 161 DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG--DRGAQGRACGNLGNTYYLLGD 238 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCC
Confidence 567788999999999999999 9999999999999987763 557788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 001206 271 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES 350 (1124)
Q Consensus 271 yeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~ 350 (1124)
+++|+.+|++++++.... .+....+.++..+|.+|..+|++++|+.+|++++.+.... .++.....++..++.+..
T Consensus 239 ~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~ 314 (411)
T 4a1s_A 239 FQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYT 314 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHH
Confidence 999999999999998775 4556677899999999999999999999999999998765 233444455555554443
Q ss_pred HhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 351 KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 351 k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
...+..++......................++..+|.+|..+|++++|+.+|++++++.+++.
T Consensus 315 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 315 LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 333333333222221111111222334567899999999999999999999999999998876
No 5
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.88 E-value=1.3e-20 Score=210.57 Aligned_cols=276 Identities=13% Similarity=0.088 Sum_probs=224.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..++.+|.+++..|++++|+.+|++++.+.... .+.+..+.++..+|.+|..+|++++|+.++++++.+..+. .
T Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~ 121 (406)
T 3sf4_A 46 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--N 121 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--c
Confidence 46788999999999999999999999999998776 4567788999999999999999999999999999998875 3
Q ss_pred CChhHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQH--------------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 267 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGd--------------------yeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~ 267 (1124)
+......++.++|.+|...|+ +++|+.+|++++.+..... +.+..+.++.++|.+|..
T Consensus 122 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~ 199 (406)
T 3sf4_A 122 DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYL 199 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHH
Confidence 456678899999999999999 9999999999999988753 567788999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 001206 268 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 347 (1124)
Q Consensus 268 lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~ 347 (1124)
+|++++|+.+|++++.+.... .+....+.++.++|.+|..+|++++|+.++++++++.... .++.....+...++.
T Consensus 200 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~ 275 (406)
T 3sf4_A 200 LGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGN 275 (406)
T ss_dssp HTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHH
Confidence 999999999999999998765 4556677899999999999999999999999999998764 234444555556654
Q ss_pred HHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 348 FESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 348 l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
+.....+..++......................++..+|.+|..+|++++|+.+|++++++.....
T Consensus 276 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 341 (406)
T 3sf4_A 276 TYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 341 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 444333333333222211111111222334567899999999999999999999999999988764
No 6
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.88 E-value=1.5e-20 Score=202.30 Aligned_cols=276 Identities=13% Similarity=0.084 Sum_probs=219.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..++.+|..++..|++++|+.+|++++.+.... .+.+..+.++..+|.+|..+|++++|+.++++++.+..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 117 (338)
T 3ro2_A 42 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--N 117 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--c
Confidence 46788899999999999999999999999998876 4566778999999999999999999999999999998874 3
Q ss_pred CChhHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQH--------------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 267 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGd--------------------yeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~ 267 (1124)
+......++.++|.+|..+|+ +++|+.++++++.+..... +.+....++.++|.+|..
T Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~ 195 (338)
T 3ro2_A 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYL 195 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999 9999999999999887753 567778899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 001206 268 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 347 (1124)
Q Consensus 268 lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~ 347 (1124)
+|++++|+.+|++++++.... .+....+.++..+|.+|..+|++++|+.++++++.+.... .+......+...++.
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~ 271 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGN 271 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHH
Confidence 999999999999999998765 4556677899999999999999999999999999998764 233444455555554
Q ss_pred HHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 348 FESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 348 l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
+.....+..++......................++..+|.+|..+|++++|+.+|++++++.+++.
T Consensus 272 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 272 TYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence 433333333332222111111111222334567899999999999999999999999999887654
No 7
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.88 E-value=8.5e-21 Score=215.09 Aligned_cols=269 Identities=16% Similarity=0.063 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
....++.+|..++..|++++|+.+|++|+.+.... .+.+..+.++++||.+|..+|++++|+.++++|+.++.+.. .
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~ 176 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-L 176 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-T
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-C
Confidence 34567888999999999999999999999987654 44567899999999999999999999999999999987632 1
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
.....+.++.+||.+|..+|++++|+++|++|+++.+... +....+.++.+||.+|..+|++++|+.+|++|+.+.+.
T Consensus 177 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 177 YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ--NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 2346789999999999999999999999999999987753 44567889999999999999999999999999999876
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHH---HHHHHHhccC
Q 001206 288 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFE---QQEAARNGTR 364 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e---~aeAl~~~~~ 364 (1124)
. .++..+.++.+||.+|..+|++++|+.++++++++......+.... ....|..+...... ..+++.....
T Consensus 255 ~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 255 K---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE---LFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp H---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH---HHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred h---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 5 3455588999999999999999999999999999875543322222 22333322221111 1222211111
Q ss_pred CCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhcc
Q 001206 365 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQ 414 (1124)
Q Consensus 365 ~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~~ 414 (1124)
.........++..+|.+|..+|++++|+.+|++++++..++..
T Consensus 329 -------~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 329 -------KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 1122346678889999999999999999999999999998874
No 8
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.87 E-value=2.7e-20 Score=210.28 Aligned_cols=275 Identities=16% Similarity=0.148 Sum_probs=221.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH-RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 204 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~-p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~ 204 (1124)
...+..++.+|..++..|++++|+.+|++++.+ .+.+ ...+.++..+|.+|..+|++++|+.+|++++.+.++.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 456788899999999999999999999999987 2333 3356789999999999999999999999999998775
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC--------------
Q 001206 205 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN-------------- 270 (1124)
Q Consensus 205 lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGd-------------- 270 (1124)
.+.+....++.++|.+|..+|++++|+.+|++++.+..... +++..+.++.++|.+|..+|+
T Consensus 120 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 120 --NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred --cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 45678899999999999999999999999999999988753 567789999999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 001206 271 ---VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 347 (1124)
Q Consensus 271 ---yeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~ 347 (1124)
+++|+.+|++++++.... .+.+..+.++..+|.+|..+|++++|+.++++++++.... .+......++..++.
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~ 271 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLGN 271 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHH
Confidence 999999999999998776 4557788899999999999999999999999999998774 233444445555554
Q ss_pred HHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 348 FESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 348 l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
+.....+..++......................++..+|.+|..+|++++|+.+|++++++.....
T Consensus 272 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 272 SHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 443333333332222111111111122234567899999999999999999999999999988764
No 9
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.86 E-value=1.1e-19 Score=195.59 Aligned_cols=271 Identities=14% Similarity=0.083 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
+..++..|..++..|++++|+.+|++++.+. ..+....+.++..+|.+|...|++++|+.++++++.+.++. .+
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~ 78 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GD 78 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--cc
Confidence 5567888999999999999999999999871 12233347899999999999999999999999999998775 45
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC------------------
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN------------------ 270 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGd------------------ 270 (1124)
.+....++..+|.+|..+|++++|+.+|++++.+..... +....+.++.++|.+|..+|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~ 156 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR 156 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHH
Confidence 677889999999999999999999999999999988743 456678899999999999999
Q ss_pred --HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 001206 271 --VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 348 (1124)
Q Consensus 271 --yeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l 348 (1124)
+++|+.+|++++.+.... .+.+..+.++..+|.+|..+|++++|+.++++++++.... .+......+...++.+
T Consensus 157 ~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~ 232 (338)
T 3ro2_A 157 NALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNA 232 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHH
Confidence 999999999999998776 4567778899999999999999999999999999998774 2334444455555533
Q ss_pred --HHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 349 --ESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 349 --~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
..+.++.+........ ..............++..+|.+|..+|++++|+.+|++++++.....
T Consensus 233 ~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 233 YIFLGEFETASEYYKKTL--LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHH--HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 3344444433332221 11111122334567889999999999999999999999999987754
No 10
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.86 E-value=6.8e-20 Score=204.70 Aligned_cols=271 Identities=14% Similarity=0.092 Sum_probs=218.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
+..++.+|..++..|++++|+.+|++++.+. ..+....+.++..+|.+|...|++++|+.++++++.+.+.. .+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~ 82 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GD 82 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--cc
Confidence 5678889999999999999999999999871 12233357899999999999999999999999999998775 45
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC------------------
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN------------------ 270 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGd------------------ 270 (1124)
.+..+.++.++|.+|..+|++++|+.+|++++.+..... +....+.++.++|.+|..+|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~ 160 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence 677889999999999999999999999999999988754 456678899999999999999
Q ss_pred --HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 001206 271 --VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 348 (1124)
Q Consensus 271 --yeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l 348 (1124)
+++|+.+|++++.+.... .+.+..+.++.++|.+|..+|++++|+.++++++++.... .+......+...++.+
T Consensus 161 ~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 161 DALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHH
Confidence 999999999999998776 4567788899999999999999999999999999998774 3334444455555544
Q ss_pred HH--HhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 349 ES--KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 349 ~~--k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
.. +.++.+........ ..............++..+|.+|..+|++++|+.+|++++++.....
T Consensus 237 ~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTL--LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp HHHTTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHH--HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 33 33444333322221 11111122334577899999999999999999999999999987753
No 11
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.85 E-value=2.8e-19 Score=188.74 Aligned_cols=202 Identities=22% Similarity=0.204 Sum_probs=188.1
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001206 125 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 204 (1124)
Q Consensus 125 ~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~ 204 (1124)
....+..++.+|.+++..|++++|+.+|++++.+..+..|.+++..+.++.+||.+|..+|++++|+.+|++++.+.++.
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001206 205 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 205 lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei 284 (1124)
.+.+++....++.++|.+|..+|++++|+.+|++++.+++...+.+++....++.++|.+|..+|++++|+.+|++++.+
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89889999999999999999999999999999999999999888889999999999999999999999999999999998
Q ss_pred HHHh-----------------------------------------cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001206 285 NQRL-----------------------------------------LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 323 (1124)
Q Consensus 285 ~~k~-----------------------------------------lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekA 323 (1124)
.... .+.+++....++..||.+|..+|++++|+.+|+++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 199 AHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5432 12356788889999999999999999999999999
Q ss_pred HHH
Q 001206 324 LQI 326 (1124)
Q Consensus 324 Lei 326 (1124)
+++
T Consensus 279 l~~ 281 (283)
T 3edt_B 279 SRN 281 (283)
T ss_dssp HTT
T ss_pred HHh
Confidence 875
No 12
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=3.7e-18 Score=183.45 Aligned_cols=203 Identities=23% Similarity=0.241 Sum_probs=186.4
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001206 125 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 204 (1124)
Q Consensus 125 ~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~ 204 (1124)
....+..++.+|.++...|++++|+.+|++++.+.....+.+++....++..+|.+|..+|++++|+.+|++++.+.++.
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 144 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 45567889999999999999999999999999999998888889999999999999999999999999999999999998
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001206 205 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 205 lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei 284 (1124)
.+.+++....++.++|.+|...|++++|+.+|++++.+.....+.+++....++.++|.+|..+|++++|+.+|++++++
T Consensus 145 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 145 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999888889999999999999999999999999999999987
Q ss_pred HHHh-----------------------------------------cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001206 285 NQRL-----------------------------------------LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 323 (1124)
Q Consensus 285 ~~k~-----------------------------------------lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekA 323 (1124)
.... ....++..+.++..+|.+|..+|++++|+.+|+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 225 AHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5432 11245778899999999999999999999999999
Q ss_pred HHHH
Q 001206 324 LQIL 327 (1124)
Q Consensus 324 Lei~ 327 (1124)
+++.
T Consensus 305 l~l~ 308 (311)
T 3nf1_A 305 MRSR 308 (311)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 13
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.5e-17 Score=171.02 Aligned_cols=239 Identities=13% Similarity=0.081 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
..+..++.+|..++..|++++|+.+|++++.+. ....++..+|.+|..+|++++|+.++++++.+.... .
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~ 72 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH---------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-R 72 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-c
Confidence 457889999999999999999999999999872 335789999999999999999999999999987553 2
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
.+.+....++..+|.+|..+|++++|+.+|++++.+. +. +.++..+|++++|+.++++++..
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~-----------~~~~~~~~~~~~a~~~~~~~~~~-- 134 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-----RT-----------ADILTKLRNAEKELKKAEAEAYV-- 134 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CC-----------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-----ch-----------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence 3444558899999999999999999999999999852 10 23444555556666666655543
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCC
Q 001206 287 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 366 (1124)
Q Consensus 287 k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~ 366 (1124)
.+....++..+|.+|...|++++|+.+|++++.+ .+.+......+.. .+...+.++.+..........
T Consensus 135 ------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 135 ------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAA-ALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp ------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHH
T ss_pred ------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcccHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHh
Confidence 2344555556666666666666666666666554 2333322211111 122222222222222111100
Q ss_pred chhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 367 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 367 ~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
.+....++..+|.+|..+|++++|+.+|++++++..+..
T Consensus 203 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 241 (258)
T 3uq3_A 203 --------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 241 (258)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc
Confidence 112246788999999999999999999999999986654
No 14
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=3.2e-18 Score=190.92 Aligned_cols=250 Identities=12% Similarity=0.068 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
+..++.+|..++..|++++|+.+|++++.+ .+....++..+|.+|..+|++++|+.+|++++.+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 128 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ--------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL-------- 128 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 345778899999999999999999999987 4566889999999999999999999999999987
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP--NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp--~~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
.|....++.++|.+|..+|++++|+.+|++++.+.......... ....++..+|.+|..+|++++|+.+|++++.+.
T Consensus 129 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 207 (365)
T 4eqf_A 129 QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN- 207 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-
T ss_pred CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-
Confidence 35557889999999999999999999999999874332111000 124456677999999999999999999999874
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCC
Q 001206 287 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 366 (1124)
Q Consensus 287 k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~ 366 (1124)
+.. ....++..+|.+|..+|++++|+.+|++++++ .+++......+..+ +...+.++.+..........
T Consensus 208 ----p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 208 ----GDM-IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-----RPEDYSLWNRLGAT-LANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp ----CSS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHH
T ss_pred ----cCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhc
Confidence 221 03567889999999999999999999999986 45555443333222 33344444444433322111
Q ss_pred chhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhcc
Q 001206 367 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQ 414 (1124)
Q Consensus 367 ~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~~ 414 (1124)
.+....++..+|.+|..+|++++|+.+|++++++.+...+
T Consensus 277 --------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 316 (365)
T 4eqf_A 277 --------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN 316 (365)
T ss_dssp --------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--
T ss_pred --------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCC
Confidence 2233578999999999999999999999999999987654
No 15
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=6e-18 Score=178.11 Aligned_cols=198 Identities=22% Similarity=0.173 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
+..++.+|..++..|++++|+.+|++++.+ +|....++.++|.++..+|++++|+.+|++++.+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 68 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-------- 68 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 456788999999999999999999999976 6778899999999999999999999999999997
Q ss_pred ChhHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRL-----------QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 277 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~l-----------GdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~ 277 (1124)
.|+...++.++|.+|..+ |++++|+.+|++++++ .|....++.++|.+|..+|++++|+.+
T Consensus 69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHHHH
Confidence 456678999999999999 9999999999999986 455678899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHH
Q 001206 278 LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQE 357 (1124)
Q Consensus 278 lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~ae 357 (1124)
|++++++. + ...++.++|.+|..+|++++|+.+|++++++ .++++
T Consensus 141 ~~~al~~~------~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~P~~~--------------------- 185 (217)
T 2pl2_A 141 LKQALALE------D---TPEIRSALAELYLSMGRLDEALAQYAKALEQ-----APKDL--------------------- 185 (217)
T ss_dssp HHHHHHHC------C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCH---------------------
T ss_pred HHHHHhcc------c---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCh---------------------
Confidence 99999874 1 3567889999999999999999999999875 23322
Q ss_pred HHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 358 AARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 407 (1124)
Q Consensus 358 Al~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALk 407 (1124)
.++..+|.++..+|++++|+.+|+++-.
T Consensus 186 ----------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 186 ----------------------DLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp ----------------------HHHHHHHHHHTC----------------
T ss_pred ----------------------HHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 4566778888889999999999887643
No 16
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.77 E-value=1.7e-18 Score=183.94 Aligned_cols=245 Identities=11% Similarity=0.040 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
...++..|..++..|++++|+.+|++++.+ .+....++..+|.+|..+|++++|+.++++++.. ..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~ 69 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-----VNA 69 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCc
Confidence 345788899999999999999999999876 3444568999999999999999999999999873 222
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
......++.++|.+|..+|++++|+.+|++++++ .|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 70 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--- 138 (272)
T 3u4t_A 70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--- 138 (272)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---
T ss_pred hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---
Confidence 2334778999999999999999999999999986 33445789999999999999999999999998762
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh--HH-----HHHHHHh
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA--FE-----QQEAARN 361 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~--~e-----~aeAl~~ 361 (1124)
+....+++.+|......+++++|+.+|++++++ .+++......+..+....... ++ ..+++..
T Consensus 139 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 139 -----TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL-----KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp -----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 334678899994455566999999999999986 355544433333222221110 11 1111111
Q ss_pred ccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhh
Q 001206 362 GTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 412 (1124)
Q Consensus 362 ~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl 412 (1124)
....+.. .......++..+|.+|..+|++++|+.+|++++++.+..
T Consensus 209 ~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 209 CAPGGAK-----YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp HGGGGGG-----GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred Hhccccc-----chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH
Confidence 1111110 012355789999999999999999999999999987653
No 17
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.77 E-value=2e-17 Score=186.40 Aligned_cols=238 Identities=17% Similarity=0.173 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
..+..++.+|..+...|++++|+.+|++++.+ .|....+|.+||.++...|++++|+..|++++.+
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------ 130 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY------ 130 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 34678899999999999999999999999986 5667788999999999999999999999999886
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
.|+...++.++|.++..+|++++|+++|++++.+ .|....++.++|.+|..+|++++|+.+|++++.+.
T Consensus 131 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 199 (388)
T 1w3b_A 131 --NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD- 199 (388)
T ss_dssp --CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-
T ss_pred --CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 3556778899999999999999999999999875 45567789999999999999999999999999863
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCC
Q 001206 287 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 366 (1124)
Q Consensus 287 k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~ 366 (1124)
+....++..+|.++...|++++|+..|++++.+ .+++......+..+ +...+.++.+.........
T Consensus 200 -------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~- 265 (388)
T 1w3b_A 200 -------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-----SPNHAVVHGNLACV-YYEQGLIDLAIDTYRRAIE- 265 (388)
T ss_dssp -------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH-
T ss_pred -------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHh-
Confidence 334578889999999999999999999999876 45655443333222 3333444444433322211
Q ss_pred chhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 001206 367 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 367 ~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~ 410 (1124)
..+....++..+|.++..+|++++|+.+|++++++.+
T Consensus 266 -------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 302 (388)
T 1w3b_A 266 -------LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302 (388)
T ss_dssp -------TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT
T ss_pred -------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 1223346788999999999999999999999998754
No 18
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.76 E-value=5.5e-17 Score=182.71 Aligned_cols=236 Identities=19% Similarity=0.158 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
...+..+|.++...|++++|+.+|++++.+ +|....++.++|.+|...|++++|+.+|++++.+
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------- 198 (388)
T 1w3b_A 135 YCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-------- 198 (388)
T ss_dssp THHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------
Confidence 445667888888889999999999888876 4666778899999999999999999999999886
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
.|....++.++|.++...|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 199 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--- 267 (388)
T 1w3b_A 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--- 267 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC---
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Confidence 3555778899999999999999999999999875 34456788899999999999999999999998753
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCch
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 368 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~ 368 (1124)
++ ...++..+|.+|..+|++++|+.+|++++++ .+.+......+..+ +...+.++.+..........
T Consensus 268 --p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~-- 334 (388)
T 1w3b_A 268 --PH---FPDAYCNLANALKEKGSVAEAEDCYNTALRL-----CPTHADSLNNLANI-KREQGNIEEAVRLYRKALEV-- 334 (388)
T ss_dssp --SS---CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHTTTCHHHHHHHHHHHTTS--
T ss_pred --CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcccHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhc--
Confidence 33 3467889999999999999999999999886 45665544333322 22333444444443333222
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 001206 369 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 369 ~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~ 410 (1124)
.+....++..++.+|..+|++++|+.+|++++++.+
T Consensus 335 ------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 335 ------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp ------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred ------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 223457889999999999999999999999987644
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=2.8e-17 Score=182.12 Aligned_cols=255 Identities=13% Similarity=0.081 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
+..++.+|..++..|++++|+.+|++++.+ ++....++..+|.+|..+|++++|+.+|++++.+
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------- 127 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-------- 127 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--------
Confidence 345678899999999999999999999976 4566789999999999999999999999999987
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----------------------------------------
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG---------------------------------------- 248 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G---------------------------------------- 248 (1124)
.|....++.++|.+|..+|++++|+.+|++++.+......
T Consensus 128 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 207 (368)
T 1fch_A 128 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA 207 (368)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 3445778999999999999999999999988764211000
Q ss_pred -CCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 249 -PSHPN--TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 325 (1124)
Q Consensus 249 -~dhp~--~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALe 325 (1124)
...|. ...++.++|.+|...|++++|+.+|++++.+. +....++..+|.+|..+|++++|+.+|+++++
T Consensus 208 ~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 279 (368)
T 1fch_A 208 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--------PNDYLLWNKLGATLANGNQSEEAVAAYRRALE 279 (368)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00122 45678889999999999999999999988763 22356788899999999999999999999887
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhh---hhcCCCcHHHHHHHHHHHHHHcCChHHHHHHH
Q 001206 326 ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASI---ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRK 402 (1124)
Q Consensus 326 i~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~---a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~y 402 (1124)
+ .+++......+..+ +...+.++.+.............. ....+.....++..++.+|..+|++++|..++
T Consensus 280 ~-----~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 280 L-----QPGYIRSRYNLGIS-CINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp H-----CTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred h-----CCCcHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 6 34554433332222 333344444433332221111000 00112234678889999999999999999999
Q ss_pred HHHHHHHhhhc
Q 001206 403 TYVAKVKGNFY 413 (1124)
Q Consensus 403 ekALkL~~sl~ 413 (1124)
+++++.+.+.+
T Consensus 354 ~~~l~~~~~~~ 364 (368)
T 1fch_A 354 ARDLSTLLTMF 364 (368)
T ss_dssp TTCHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 98888877665
No 20
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.75 E-value=1.8e-17 Score=197.59 Aligned_cols=158 Identities=18% Similarity=0.150 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.++.+++.+..+..+|+|++|+.+|+++|++.++++|++|+.++.++.+||.+|..+|+|++|+.+++++|+++++.+|.
T Consensus 308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~ 387 (490)
T 3n71_A 308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH 387 (490)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC
Confidence 34556667777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
+||+++.+++|||.+|..+|+|++|+.+|++|+++++..+|++||.++.++.+|+.++..++.|++|+..|+++.+.+
T Consensus 388 ~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 388 NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997654
No 21
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.75 E-value=6.3e-16 Score=173.40 Aligned_cols=272 Identities=10% Similarity=-0.020 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
..+..+..+|.+++..|++++|+.++++++.... ..+....+.++..+|.+|..+|++++|+.++++++.+..+.
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-- 86 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELP---PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-- 86 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--
Confidence 3466778889999999999999999999998631 11122356689999999999999999999999999998773
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
.+......++.++|.++..+|++++|+.+|++++.+.....+..++....++.++|.+|..+|++++|+.++++++.+..
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 33345677889999999999999999999999999998876555677888999999999999999999999999999875
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHH--HHHHHhHHHHHHHHhcc
Q 001206 287 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ-DAAAWLE--YFESKAFEQQEAARNGT 363 (1124)
Q Consensus 287 k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~-~a~~~La--~l~~k~~e~aeAl~~~~ 363 (1124)
.. + ......++..+|.++...|++++|+.++++++.+.... + .+.... .....+. +...+..+.+.......
T Consensus 167 ~~-~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 167 SY-Q--PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-K-YHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp TS-C--GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-C-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cc-C--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 43 2 22355788999999999999999999999999886432 1 122111 1111222 33445555555554443
Q ss_pred CCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhh
Q 001206 364 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 412 (1124)
Q Consensus 364 ~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl 412 (1124)
...... ........+..++.++..+|++++|+.++++++.+....
T Consensus 242 ~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~ 286 (373)
T 1hz4_A 242 AKPEFA----NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL 286 (373)
T ss_dssp CCCCCT----TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCC----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 332211 001112356788999999999999999999998887663
No 22
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=7.8e-17 Score=185.72 Aligned_cols=257 Identities=12% Similarity=0.031 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP-YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~-d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
+..+..+|.++..+|++++|+.+|++|+++.....+. .++..+.+|.+||.+|..+|++++|+.+|++++.+.+...+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 5667789999999999999999999999998876443 467788899999999999999999999999999999988777
Q ss_pred CChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---HHHCCCHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQ--HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM---EEGLGNVHVALRYLHKAL 282 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lG--dyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~i---y~~lGdyeeAle~lekAL 282 (1124)
.++....++.++|.++...| +|++|+.+|++|+++ .++++. ++.++|.+ +...+++++|++.|++|+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~---~~~~~~~~~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPE---FTSGLAIASYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHH---HHHHHHHHHHHHHHSCCCCCTHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 77778889999998877654 699999999999985 223332 22333332 333444555555555554
Q ss_pred HHHHH-------------hcCC-----------------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 001206 283 KCNQR-------------LLGP-----------------DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 332 (1124)
Q Consensus 283 ei~~k-------------~lG~-----------------d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG 332 (1124)
++... ..+. ..+....++.++|.+|...|++++|+.+|++++++ .
T Consensus 203 ~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~ 277 (472)
T 4g1t_A 203 RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY-----I 277 (472)
T ss_dssp HHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----S
T ss_pred hcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-----C
Confidence 43100 0000 01223466888999999999999999999999886 3
Q ss_pred CCCHHHHHHHHHHHHHHHHh---------------------HHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHH
Q 001206 333 PDDLRTQDAAAWLEYFESKA---------------------FEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT 391 (1124)
Q Consensus 333 ~dh~~t~~a~~~La~l~~k~---------------------~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~ 391 (1124)
+++...... ++.+.... .+.+....... ....+....++..+|.+|..
T Consensus 278 p~~~~~~~~---lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--------~~~~~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 278 PNNAYLHCQ---IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA--------DEANDNLFRVCSILASLHAL 346 (472)
T ss_dssp TTCHHHHHH---HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH--------HHHCTTTCCCHHHHHHHHHH
T ss_pred CChHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH--------hhcCCchhhhhhhHHHHHHH
Confidence 555443322 22111111 11111111100 01112233457789999999
Q ss_pred cCChHHHHHHHHHHHHHH
Q 001206 392 KGRNVSTLKRKTYVAKVK 409 (1124)
Q Consensus 392 qGdyeeAl~~yekALkL~ 409 (1124)
+|++++|+.+|++++++.
T Consensus 347 ~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp TTCHHHHHHHHHHHHHSC
T ss_pred hccHHHHHHHHHHHHhcC
Confidence 999999999999998764
No 23
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.75 E-value=8.2e-17 Score=162.44 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
+..++.+|.++..+|+|++|+.+|++++++ +|....++..||.+|..+|++++|+..+++++..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-------- 68 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-------- 68 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 567899999999999999999999999987 6677889999999999999999999999999876
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
.+....++..+|.++...++++.|+.++.+++.+ .|....++..+|.+|..+|++++|+++|++++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--- 137 (184)
T 3vtx_A 69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--- 137 (184)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc---
Confidence 3445678899999999999999999999999986 34456788999999999999999999999999874
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
|....+++++|.+|..+|++++|+.+|++|+++
T Consensus 138 -----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 138 -----PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 344678999999999999999999999999986
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=2.1e-17 Score=179.22 Aligned_cols=240 Identities=10% Similarity=0.012 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERELGLDH 209 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lG-dydeAle~~~KALeI~er~lg~D~ 209 (1124)
.+..++..++..|++++|+.+|++++.. ++....++..+|.++...| ++++|+.+|++++.+ .
T Consensus 58 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~ 121 (330)
T 3hym_B 58 CLPVHIGTLVELNKANELFYLSHKLVDL--------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------E 121 (330)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------C
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------C
Confidence 4455677888999999999999999986 4556678999999999999 999999999999875 2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 001206 210 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 289 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~l 289 (1124)
+....++..+|.+|...|++++|+.+|++++.+. +....++..+|.+|...|++++|+.+|++++.+.
T Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---- 189 (330)
T 3hym_B 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---- 189 (330)
T ss_dssp TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC----
Confidence 4456789999999999999999999999999862 2234567789999999999999999999998764
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH--HHHHHhHHHHHHHHhccCCC
Q 001206 290 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD-LRTQDAAAWLE--YFESKAFEQQEAARNGTRKP 366 (1124)
Q Consensus 290 G~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh-~~t~~a~~~La--~l~~k~~e~aeAl~~~~~~~ 366 (1124)
+....++..+|.+|..+|++++|+.++++++++.....+... +....+...++ +...+.++.+..........
T Consensus 190 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 190 ----PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 334578899999999999999999999999998755433221 11122333333 33334444444333222111
Q ss_pred chhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 001206 367 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 367 ~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~ 410 (1124)
. +....++..+|.+|..+|++++|+.+|++++++.+
T Consensus 266 ~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 266 I--------PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp S--------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred C--------ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 1 12246788999999999999999999999887654
No 25
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.74 E-value=9e-17 Score=176.76 Aligned_cols=191 Identities=10% Similarity=-0.080 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 209 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~ 209 (1124)
..+...|.+|...|+|++|+.+|.+++.+..+. .+....+.+|.++|.+|..+|++++|+.+|++|+.+..+. .+.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~ 113 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQF 113 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCH
Confidence 344555778899999999999999999998765 3445668899999999999999999999999999998763 334
Q ss_pred hhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 210 PDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~l-GdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
...+.++.++|.+|..+ |++++|+.+|++|+++..... +......++.++|.+|..+|+|++|+.+|++++++....
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 45678999999999996 999999999999999987532 233446789999999999999999999999999875221
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
+........++.++|.+|..+|++++|+.+|++++++.
T Consensus 192 -~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 192 -RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp -TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred -CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 01112345678999999999999999999999998764
No 26
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.74 E-value=7.9e-17 Score=178.48 Aligned_cols=183 Identities=14% Similarity=0.088 Sum_probs=153.5
Q ss_pred HcCCHHHHHHHHHHHHHHHHH-hc--CCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 001206 141 DKGKLEDAVTYGTKALAKLVA-VC--GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 217 (1124)
Q Consensus 141 ~qGdyeeAl~~f~kAL~i~e~-i~--G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~ 217 (1124)
..|++++|..+++++...... .+ +.+....+..|...|.+|..+|++++|+.+|++++.+..+. .+....+.+|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~ 80 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFE 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 357788999999988876543 22 23444556678888999999999999999999999998774 34556788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 001206 218 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTA 297 (1124)
Q Consensus 218 nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A 297 (1124)
++|.+|..+|++++|+.+|++|++++.... +....+.++.++|.+|.. |++++|+.+|++|+++.... .+....+
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~ 155 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQAA 155 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChhHHH
Confidence 999999999999999999999999987642 344568899999999999 99999999999999998663 2344567
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 001206 298 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 330 (1124)
Q Consensus 298 ~a~~nLA~ly~~lGd~eeAle~lekALei~~k~ 330 (1124)
.++.++|.+|..+|+|++|+.+|++++++....
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 899999999999999999999999999987654
No 27
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.73 E-value=7.4e-16 Score=174.32 Aligned_cols=218 Identities=15% Similarity=0.103 Sum_probs=178.4
Q ss_pred hcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001206 122 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 201 (1124)
Q Consensus 122 ~~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~ 201 (1124)
.......+..++.+|.++...|++++|+.+|.+|+.++... +...+..+.++.+||.+|..+|++++|+.+|++|+.+.
T Consensus 136 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 214 (383)
T 3ulq_A 136 VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA 214 (383)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 34455678999999999999999999999999999998765 22356788999999999999999999999999999998
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001206 202 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 281 (1124)
Q Consensus 202 er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekA 281 (1124)
++. .+.+..+.++.+||.+|..+|++++|+.+|++|+.+.+... +.+..+.++.++|.+|..+|++++|+.+|+++
T Consensus 215 ~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 215 EAE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHc--CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 875 45677888999999999999999999999999999987753 23777999999999999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhH
Q 001206 282 LKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAF 353 (1124)
Q Consensus 282 Lei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~ 353 (1124)
+.+..+.. .+.....+..||.+|...|++ ..+++++.++++. ...+....+...|+.+.....
T Consensus 291 l~~~~~~~---~~~~~~~~~~l~~~~~~~~~~----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g 353 (383)
T 3ulq_A 291 MAYSQKAG---DVIYLSEFEFLKSLYLSGPDE----EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERK 353 (383)
T ss_dssp HHHHHHHT---CHHHHHHHHHHHHHHTSSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC---CHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCC
Confidence 99987652 233334467799999999996 4566666666655 344555556666665444333
No 28
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.73 E-value=6.3e-17 Score=192.86 Aligned_cols=154 Identities=11% Similarity=-0.000 Sum_probs=146.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001206 174 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 253 (1124)
Q Consensus 174 y~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~ 253 (1124)
....+..+..+|+|++|+.+|+++|++.++++|.+|++++.++++||.+|..+|+|++|+.+++++|+++++.+|++||.
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 34455667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 254 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 254 ~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
++.+++|||.+|..+|+|++|+.+|++|+++.+..+|++||.++.++..|+.++..++.|++|+..|+++.+.+
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999886543
No 29
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.1e-16 Score=173.60 Aligned_cols=244 Identities=12% Similarity=0.096 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 209 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~ 209 (1124)
..++.+|..++..|+|++|+.+|++++.. ++....++..++.++..+|++++|+.++++++.. .
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~ 86 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEK--------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--------Y 86 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--------C
Confidence 45678888999999999999999999876 3445567888999999999999999999999986 3
Q ss_pred hhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 210 PDTMKSYGDLAVFYYRLQ-HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~lG-dyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
|....++..+|.++...| ++++|+.+|++++.+ .+....++..+|.+|..+|++++|+.+|++++.+.
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--- 155 (330)
T 3hym_B 87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--- 155 (330)
T ss_dssp TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---
Confidence 445678999999999999 999999999999874 34445678999999999999999999999999875
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCch
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 368 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~ 368 (1124)
++ ....+..+|.+|...|++++|+.++++++++ .+++......+..+ +...+.++.+............
T Consensus 156 --~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 156 --KG---CHLPMLYIGLEYGLTNNSKLAERFFSQALSI-----APEDPFVMHEVGVV-AFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp --TT---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHT
T ss_pred --cc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----CCCChHHHHHHHHH-HHHcccHHHHHHHHHHHHHHhh
Confidence 22 2356777999999999999999999999875 35555443333322 2333344444333221111000
Q ss_pred hhh-hcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 369 SIA-SKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 369 ~~a-~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
... ....+....++..+|.+|..+|++++|+.+|++++++...
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 000 0011233468899999999999999999999999988643
No 30
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=7.8e-17 Score=186.17 Aligned_cols=243 Identities=9% Similarity=0.052 Sum_probs=191.6
Q ss_pred hcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHH
Q 001206 122 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD-FNQATIYQQKALDI 200 (1124)
Q Consensus 122 ~~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGd-ydeAle~~~KALeI 200 (1124)
.......+..++.+|.++...|++++|+.+|++++.+ +|....+|+++|.++..+|+ +++|+.+|++++.+
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l 161 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE 161 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 3456677889999999999999999999999999988 67888999999999999997 99999999999997
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001206 201 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 280 (1124)
Q Consensus 201 ~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lek 280 (1124)
+|....+|+++|.+|..+|++++|+.+|++|+++ .|....+++++|.++..+|++++|+.+|++
T Consensus 162 --------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~ 225 (382)
T 2h6f_A 162 --------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQ 225 (382)
T ss_dssp --------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4667889999999999999999999999999986 466678999999999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHH-----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HhH
Q 001206 281 ALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLS-----VQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES-KAF 353 (1124)
Q Consensus 281 ALei~~k~lG~d~p~~A~a~~nLA~ly~~-lGd~eeA-----le~lekALei~~k~lG~dh~~t~~a~~~La~l~~-k~~ 353 (1124)
++++. +....+|+++|.+|.. .|.+++| +.+|++++.+ .+++......+.++..... ..+
T Consensus 226 al~l~--------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-----~P~~~~a~~~l~~ll~~~g~~~~ 292 (382)
T 2h6f_A 226 LLKED--------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-----VPHNESAWNYLKGILQDRGLSKY 292 (382)
T ss_dssp HHHHC--------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHTTTCGGGC
T ss_pred HHHhC--------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHccCccch
Confidence 99874 4456889999999999 5555888 5889988886 5777655444444322111 012
Q ss_pred HHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcC--------C-hHHHHHHHHHH-HHHHh
Q 001206 354 EQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKG--------R-NVSTLKRKTYV-AKVKG 410 (1124)
Q Consensus 354 e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qG--------d-yeeAl~~yekA-LkL~~ 410 (1124)
+.+....... ...+....++..||.+|..+| + +++|+.+|+++ +++..
T Consensus 293 ~~a~~~~~~~---------~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 293 PNLLNQLLDL---------QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHHHH---------TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHh---------ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc
Confidence 2222221111 122334567889999998874 2 47888888887 55433
No 31
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.73 E-value=6.7e-17 Score=201.02 Aligned_cols=173 Identities=23% Similarity=0.290 Sum_probs=158.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~l 205 (1124)
...+.++..+|.++..+|++++|+.+|++|+++ +|..+.+|++||.+|..+|++++|+.+|++|+++
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----- 72 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI----- 72 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 456889999999999999999999999999988 6778899999999999999999999999999997
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 206 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.|+...+|++||.+|..+|++++|+++|++|+++ +|....++++||.+|..+|++++|+.+|++|+++.
T Consensus 73 ---~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 73 ---SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4667889999999999999999999999999986 45668899999999999999999999999999874
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 001206 286 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 330 (1124)
Q Consensus 286 ~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~ 330 (1124)
+....++.+||.+|..+|++++|++.+++++++....
T Consensus 142 --------P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 142 --------PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp --------SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred --------CCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 3346789999999999999999999999999986543
No 32
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.73 E-value=3.9e-16 Score=176.76 Aligned_cols=203 Identities=11% Similarity=0.014 Sum_probs=170.6
Q ss_pred cCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001206 123 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 202 (1124)
Q Consensus 123 ~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~e 202 (1124)
......+..++.+|.+|...|++++|+.++++|+.++.... ......+.++.+||.+|..+|++++|+.+|++|+.+.+
T Consensus 135 ~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 213 (378)
T 3q15_A 135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM 213 (378)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44566789999999999999999999999999999987641 12346789999999999999999999999999999987
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001206 203 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 282 (1124)
Q Consensus 203 r~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekAL 282 (1124)
+. .+....+.++.+||.+|..+|++++|+.+|++|+.+.+.. .++....++.++|.+|..+|++++|+.+|++++
T Consensus 214 ~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 214 DI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Hc--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 74 3445678899999999999999999999999999998775 356668999999999999999999999999999
Q ss_pred HHHHHhcC---------------------------------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 001206 283 KCNQRLLG---------------------------------PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 329 (1124)
Q Consensus 283 ei~~k~lG---------------------------------~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k 329 (1124)
++..+... ...+....++..||.+|..+|++++|+.+|++++++.++
T Consensus 289 ~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 368 (378)
T 3q15_A 289 DHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368 (378)
T ss_dssp HHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 87533211 022344556778889999999999999999999888766
Q ss_pred hc
Q 001206 330 KL 331 (1124)
Q Consensus 330 ~l 331 (1124)
..
T Consensus 369 ~~ 370 (378)
T 3q15_A 369 IL 370 (378)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 33
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.73 E-value=3.5e-16 Score=164.50 Aligned_cols=206 Identities=17% Similarity=0.099 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..++.+|..++..|++++|+.+|++++.+ .+....++..+|.+|...|++++|+.+|++++.+
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------- 100 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS------- 100 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------
Confidence 3788999999999999999999999999987 3556789999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
.+....++.++|.+|...|++++|+++|++++. ....+....++.++|.+|..+|++++|+.+|+++++..
T Consensus 101 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-- 171 (252)
T 2ho1_A 101 -DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-- 171 (252)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred -CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 234567899999999999999999999999986 12456778899999999999999999999999999864
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCc
Q 001206 288 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 367 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~ 367 (1124)
+. ...++..+|.+|..+|++++|+.+++++++. .+.+
T Consensus 172 ---~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~-------------------------------- 208 (252)
T 2ho1_A 172 ---RN---QPSVALEMADLLYKEREYVPARQYYDLFAQG-----GGQN-------------------------------- 208 (252)
T ss_dssp ---SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCCC--------------------------------
T ss_pred ---cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCc--------------------------------
Confidence 22 3567889999999999999999999887653 1221
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 368 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 368 ~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
...+..++.++...|++++|+.++++++++...
T Consensus 209 -----------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 209 -----------ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp -----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 134667788889999999999999999887654
No 34
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.73 E-value=3e-16 Score=182.91 Aligned_cols=246 Identities=13% Similarity=0.060 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
..+..++.+|..+...|++++|+.+|++++.+ .+. ..++..+|.+|...|++++|+.+|++++.+
T Consensus 241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------ 305 (537)
T 3fp2_A 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL------ 305 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc------
Confidence 34678899999999999999999999999987 344 788999999999999999999999999987
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
.+....++..+|.+|...|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 306 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 374 (537)
T 3fp2_A 306 --NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--------NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF- 374 (537)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3445678999999999999999999999999985 23334678999999999999999999999999874
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH----------HhHHHH
Q 001206 287 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES----------KAFEQQ 356 (1124)
Q Consensus 287 k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~----------k~~e~a 356 (1124)
++ ...++..+|.+|..+|++++|+.+|++++++....................+... +.++.+
T Consensus 375 ----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 375 ----PT---LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp ----TT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred ----CC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 22 3467888999999999999999999999998755432221111111111122232 444444
Q ss_pred HHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 357 EAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 357 eAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
.......... .+....++..+|.+|..+|++++|+.+|++++++.+...
T Consensus 448 ~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 448 IKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 4333222111 122347889999999999999999999999999977643
No 35
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.73 E-value=9.3e-17 Score=166.96 Aligned_cols=206 Identities=15% Similarity=0.145 Sum_probs=156.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~l 205 (1124)
...+..++.+|..++..|++++|+.+|++++.. .+....++..+|.+|...|++++|+.++++++.+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----- 86 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL----- 86 (243)
T ss_dssp ----------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Confidence 345778899999999999999999999999864 4556789999999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 206 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.+....++..+|.+|..+|++++|+.+|++++.+. +....++..+|.+|..+|++++|+.+|++++.+.
T Consensus 87 ---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 87 ---DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155 (243)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred ---CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 24457889999999999999999999999999862 2235678999999999999999999999999874
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCC
Q 001206 286 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 365 (1124)
Q Consensus 286 ~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~ 365 (1124)
+ ....++..+|.+|...|++++|+.+++++++. .+++
T Consensus 156 -----~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~------------------------------ 192 (243)
T 2q7f_A 156 -----E---NDTEARFQFGMCLANEGMLDEALSQFAAVTEQ-----DPGH------------------------------ 192 (243)
T ss_dssp -----T---TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-----CTTC------------------------------
T ss_pred -----C---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccc------------------------------
Confidence 2 23467889999999999999999999988764 1211
Q ss_pred CchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 366 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 366 ~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
..++..+|.+|..+|++++|+.+|++++++...
T Consensus 193 -------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 193 -------------ADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp -------------HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred -------------HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 135678899999999999999999999998654
No 36
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.72 E-value=4.1e-16 Score=170.31 Aligned_cols=244 Identities=14% Similarity=0.075 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
...++.+|.+++..|++++|+.+|++++.+ .+....++..+|.+|...|++++|+.+|++++.+. +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~ 103 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTKVIAL--------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-----PS 103 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-----CC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----Cc
Confidence 567889999999999999999999999987 45566899999999999999999999999998752 10
Q ss_pred ChhHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 001206 209 HPDTMKSYGDL------------AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 276 (1124)
Q Consensus 209 ~p~~a~ay~nL------------A~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle 276 (1124)
......++..+ |.++...|++++|+.+|++++.+ .|....++..+|.+|..+|++++|+.
T Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~ 175 (359)
T 3ieg_A 104 EQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAIS 175 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 00334444444 89999999999999999999985 33446789999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---------H-
Q 001206 277 YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL---------E- 346 (1124)
Q Consensus 277 ~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~L---------a- 346 (1124)
+|++++.+. +....++..+|.+|..+|++++|+.++++++++ .+++.........+ +
T Consensus 176 ~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 176 DLKAASKLK--------SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp HHHHHHTTC--------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CccchHHHHHHHHHHHHHHHHHHHH
Confidence 999998753 233578899999999999999999999999976 46666544333221 2
Q ss_pred -HHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 001206 347 -YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 347 -~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~ 410 (1124)
++..+.++.+........... .........++..+|.++...|++++|+.+|++++++.+
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 303 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTE----PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 303 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 233334444333322111100 111112345677899999999999999999999998743
No 37
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.72 E-value=6.4e-16 Score=173.35 Aligned_cols=274 Identities=10% Similarity=-0.045 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..+..+|..+...|++++|+.++++++.+.... .+....+.++.++|.++..+|++++|+.++++++.+.++..+.
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 129 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 129 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence 45678889999999999999999999999998764 2334556788999999999999999999999999999886555
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
+++....++.++|.+|..+|++++|+.++++++.+..... ++....++.++|.++..+|++++|+.++++++.+...
T Consensus 130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 130 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ---PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC---GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 5577888999999999999999999999999999865431 2335678899999999999999999999999988643
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHhHHHHHHHHhccCC
Q 001206 288 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRK 365 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La--~l~~k~~e~aeAl~~~~~~ 365 (1124)
. +............++.++...|++++|..++++++... .+..+.. ......++ ++..+..+.+........
T Consensus 207 ~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~l~~a~- 280 (373)
T 1hz4_A 207 G-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE---FANNHFL-QGQWRNIARAQILLGEFEPAEIVLEELN- 280 (373)
T ss_dssp S-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC---CTTCGGG-HHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred c-CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC---CCcchhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence 2 11111122223345667889999999999999887532 1111111 11222233 222233333332222111
Q ss_pred CchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 366 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 366 ~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
..............++..++.++..+|++++|..+|++++.+....+
T Consensus 281 -~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g 327 (373)
T 1hz4_A 281 -ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 327 (373)
T ss_dssp -HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc
Confidence 10011111123446788899999999999999999999999988644
No 38
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.72 E-value=1.8e-15 Score=165.25 Aligned_cols=241 Identities=17% Similarity=0.093 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..++.+|..++..|++++|+.+|++++.. .+....++..+|.+|..+|++++|+.+|++++.+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 66 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL------- 66 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 3577899999999999999999999999986 4556789999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh---hHHHHHHHH------------HHHHHHCCCHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP---NTAATYINV------------AMMEEGLGNVH 272 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp---~~a~al~nL------------A~iy~~lGdye 272 (1124)
.|....++..+|.+|...|++++|+.+|++++.+ .| ....++..+ |.++...|+++
T Consensus 67 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 67 -KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 3445688999999999999999999999999874 23 334444444 89999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 001206 273 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA 352 (1124)
Q Consensus 273 eAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~ 352 (1124)
+|+.+|++++... + ....++..+|.+|..+|++++|+.++++++++ .+.+......+..+ +...+.
T Consensus 138 ~A~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~-~~~~~~ 203 (359)
T 3ieg_A 138 AAITFLDKILEVC-----V---WDAELRELRAECFIKEGEPRKAISDLKAASKL-----KSDNTEAFYKISTL-YYQLGD 203 (359)
T ss_dssp HHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CSCCHHHHHHHHHH-HHHHTC
T ss_pred HHHHHHHHHHHhC-----C---CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH-HHHcCC
Confidence 9999999999864 2 23578899999999999999999999999875 45665544333322 333444
Q ss_pred HHHHHHHHhccCCCchhhhhcCCCcHH---------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 353 FEQQEAARNGTRKPDASIASKGHLSVS---------DLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 353 ~e~aeAl~~~~~~~~~~~a~k~~~~va---------ell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
++.+........... ....... .....+|.++...|++++|+.+|++++++.+.
T Consensus 204 ~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 204 HELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 266 (359)
T ss_dssp HHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHhhC-----ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 444443332211110 1111111 12334588899999999999999999987644
No 39
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=1.1e-16 Score=178.48 Aligned_cols=258 Identities=10% Similarity=-0.033 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..++.+|.++...|++++|+.+|++++.+ ++....++..||.+|..+|++++|+.+|++++.+.......
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 169 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLEL--------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL 169 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHH
Confidence 4677899999999999999999999999987 45667899999999999999999999999999975432211
Q ss_pred CCh--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 208 DHP--DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 208 D~p--~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
... .....+..+|.+|...|++++|+.+|++++.+. ++. ....++.++|.+|..+|++++|+.+|++++++.
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 243 (365)
T 4eqf_A 170 VKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-----GDM-IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR 243 (365)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHS-----CSS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-----cCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 100 124455677999999999999999999999862 221 045688999999999999999999999999874
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCC
Q 001206 286 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 365 (1124)
Q Consensus 286 ~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~ 365 (1124)
+....++..+|.+|..+|++++|+.+|++++++ .+++......+..+ +...+.++.+.........
T Consensus 244 --------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 244 --------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-----QPGFIRSRYNLGIS-CINLGAYREAVSNFLTALS 309 (365)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHHTCCHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchHHHHHHHHH-HHHCCCHHHHHHHHHHHHH
Confidence 334578999999999999999999999999987 45554443333222 3333344444333322211
Q ss_pred Cchhhhhc----CCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 366 PDASIASK----GHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 366 ~~~~~a~k----~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
........ .......++..++.++...|+.+.|...+++.+....+.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~~ 361 (365)
T 4eqf_A 310 LQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAF 361 (365)
T ss_dssp HHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTTT
T ss_pred hCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHhc
Confidence 11110000 0112357899999999999999999988877666555443
No 40
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.71 E-value=1.7e-15 Score=154.79 Aligned_cols=207 Identities=14% Similarity=0.094 Sum_probs=172.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~l 205 (1124)
...+..++.+|..++..|++++|+.+|++++.+ .+....++..+|.+|...|++++|+.++++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----- 71 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI----- 71 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----
Confidence 355778899999999999999999999999986 3455779999999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001206 206 GLDHPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~l-GdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei 284 (1124)
.+....++.++|.+|... |++++|+.+|++++. .+..+....++.++|.+|...|++++|+.+|+++++.
T Consensus 72 ---~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 72 ---KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp ---CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 244567889999999999 999999999999987 1245667888999999999999999999999999886
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhHHHHHHHHhcc
Q 001206 285 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP-DDLRTQDAAAWLEYFESKAFEQQEAARNGT 363 (1124)
Q Consensus 285 ~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~-dh~~t~~a~~~La~l~~k~~e~aeAl~~~~ 363 (1124)
. +. ...++..+|.+|..+|++++|+.++++++++. + .+.
T Consensus 143 ~-----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~--------------------------- 182 (225)
T 2vq2_A 143 Q-----PQ---FPPAFKELARTKMLAGQLGDADYYFKKYQSRV-----EVLQA--------------------------- 182 (225)
T ss_dssp S-----TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CSCCH---------------------------
T ss_pred C-----CC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCCH---------------------------
Confidence 4 22 35678899999999999999999999888752 2 222
Q ss_pred CCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 001206 364 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 364 ~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~ 410 (1124)
..+..++.++...|++++|..+++.++++.+
T Consensus 183 ----------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 183 ----------------DDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp ----------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ----------------HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 2244556667888999989888888776644
No 41
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=5.2e-16 Score=167.95 Aligned_cols=255 Identities=13% Similarity=0.050 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
...++.+|..++..|++++|+.+|++++.. .+....++..+|.++...|++++|+.++++++.+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------- 84 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIALNHARML-------- 84 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------
Confidence 345678899999999999999999999876 4556788999999999999999999999999987
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------------------CC-------------------
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC--------------------GP------------------- 249 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~--------------------G~------------------- 249 (1124)
.+....++..+|.+|...|++++|+.+|++++.+..... +.
T Consensus 85 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 85 DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence 344567899999999999999999999999876311000 00
Q ss_pred --CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 250 --SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 250 --dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
..+....++..+|.+|...|++++|+.+|++++.+. +....++..+|.+|..+|++++|+.++++++++
T Consensus 165 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~- 235 (327)
T 3cv0_A 165 LEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--------PDDAQLWNKLGATLANGNRPQEALDAYNRALDI- 235 (327)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 012235678889999999999999999999998763 223567888999999999999999999998876
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcC----CCcHHHHHHHHHHHHHHcCChHHHHHHHH
Q 001206 328 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKG----HLSVSDLLDYINPSHDTKGRNVSTLKRKT 403 (1124)
Q Consensus 328 ~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~----~~~vaell~~Lg~~y~~qGdyeeAl~~ye 403 (1124)
.+++......+..+ +...+.++.+.................. ......++..++.++..+|++++|...++
T Consensus 236 ----~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 236 ----NPGYVRVMYNMAVS-YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp ----CTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred ----CCCCHHHHHHHHHH-HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34555443333222 2333344444333221111100000000 11156788899999999999999999999
Q ss_pred HHHHHHhhhc
Q 001206 404 YVAKVKGNFY 413 (1124)
Q Consensus 404 kALkL~~sl~ 413 (1124)
++++......
T Consensus 311 ~~l~~~~~~~ 320 (327)
T 3cv0_A 311 QNVEPFAKEF 320 (327)
T ss_dssp CCSHHHHHHT
T ss_pred HHHHhcchhh
Confidence 9888887655
No 42
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.71 E-value=5.9e-16 Score=156.13 Aligned_cols=172 Identities=17% Similarity=0.189 Sum_probs=148.8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 169 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 248 (1124)
Q Consensus 169 ~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G 248 (1124)
+.+.+|++||.+|..+|+|++|+.+|++++++ +|+...++.++|.+|..+|++++|+.++++++..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~------ 68 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL------ 68 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------
Confidence 34678999999999999999999999999987 4566789999999999999999999999999875
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 001206 249 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 328 (1124)
Q Consensus 249 ~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~ 328 (1124)
.+....++..+|.++...+++++|+.++.+++.+. +....++..+|.+|..+|++++|+.+|++++++
T Consensus 69 --~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-- 136 (184)
T 3vtx_A 69 --DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN--------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-- 136 (184)
T ss_dssp --CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred --CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--
Confidence 34446778899999999999999999999999874 233567889999999999999999999998875
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 329 AKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 408 (1124)
Q Consensus 329 k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL 408 (1124)
.+++ ..++..+|.+|..+|++++|+.+|++++++
T Consensus 137 ---~p~~-------------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 137 ---KPGF-------------------------------------------IRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp ---CTTC-------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ---cchh-------------------------------------------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 2222 245788999999999999999999999998
Q ss_pred Hhhh
Q 001206 409 KGNF 412 (1124)
Q Consensus 409 ~~sl 412 (1124)
.+..
T Consensus 171 ~p~~ 174 (184)
T 3vtx_A 171 EEKK 174 (184)
T ss_dssp THHH
T ss_pred CccC
Confidence 7653
No 43
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.70 E-value=1.1e-15 Score=174.52 Aligned_cols=244 Identities=14% Similarity=0.069 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
...++.+|.+++..|++++|+.+|++++.+ .+....++..+|.+|..+|++++|+.+|++++.+ .++
T Consensus 60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~ 126 (450)
T 2y4t_A 60 YIAYYRRATVFLAMGKSKAALPDLTKVIQL--------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-----NPS 126 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC
Confidence 677889999999999999999999999987 4556789999999999999999999999999875 222
Q ss_pred Ch---hH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 001206 209 HP---DT---------MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 276 (1124)
Q Consensus 209 ~p---~~---------a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle 276 (1124)
+. .. ...+..+|.++...|++++|+.+|++++.+ .+....++.++|.+|...|++++|+.
T Consensus 127 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~ 198 (450)
T 2y4t_A 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAIS 198 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHH
Confidence 22 11 112455688899999999999999999975 34456788999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---------H-
Q 001206 277 YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL---------E- 346 (1124)
Q Consensus 277 ~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~L---------a- 346 (1124)
+|++++... + ....++..+|.+|...|++++|+.+|++++.+ .+++......+..+ +
T Consensus 199 ~~~~~~~~~-----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~ 265 (450)
T 2y4t_A 199 DLKAASKLK-----N---DNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESAE 265 (450)
T ss_dssp HHHHHHHHH-----C---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999875 2 23578899999999999999999999999865 46665554333111 2
Q ss_pred -HHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 001206 347 -YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 347 -~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~ 410 (1124)
++..+.++.+........... .........++..+|.++...|++++|+.+|++++++.+
T Consensus 266 ~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 266 ELIRDGRYTDATSKYESVMKTE----PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 233334444433322211100 000111245677788888888888888888888877643
No 44
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.70 E-value=1.9e-15 Score=161.88 Aligned_cols=201 Identities=18% Similarity=0.174 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..++.+|..++..|+|++|+.+|++++.. .+.++....+++.||.+|+.+|++++|+.+|++++.+. +
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----p 83 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-----Q 83 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-----C
Confidence 4678899999999999999999999999876 24555668999999999999999999999999999873 5
Q ss_pred CChhHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH--------------HHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYR--------LQHTELALKYVKRALYLLHLTCGPSHPNTAATY--------------INVAMME 265 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~--------lGdyeeAley~ekALei~ek~~G~dhp~~a~al--------------~nLA~iy 265 (1124)
+++....+++.+|.+|+. +|++++|+.+|++++... ++++....++ +++|.+|
T Consensus 84 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 158 (261)
T 3qky_A 84 IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEAARLY 158 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788999999999999 999999999999999862 3444455454 8999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHHHHHhcCCCC
Q 001206 266 EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM----------EAYPLSVQHEQTTLQILRAKLGPDD 335 (1124)
Q Consensus 266 ~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~l----------Gd~eeAle~lekALei~~k~lG~dh 335 (1124)
..+|++++|+.+|+++++.. ++++....+++.+|.+|..+ |++++|+.+|+++++. .+++
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 228 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI-----FPDS 228 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH-----CTTC
T ss_pred HHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH-----CCCC
Confidence 99999999999999999875 55555778899999999977 8999999999999886 4777
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 001206 336 LRTQDAAAWLEYFESKAF 353 (1124)
Q Consensus 336 ~~t~~a~~~La~l~~k~~ 353 (1124)
+....+...+..+.....
T Consensus 229 ~~~~~a~~~l~~~~~~~~ 246 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLT 246 (261)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 777777777766554433
No 45
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.69 E-value=7.6e-16 Score=175.71 Aligned_cols=249 Identities=18% Similarity=0.109 Sum_probs=184.9
Q ss_pred cCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001206 123 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 202 (1124)
Q Consensus 123 ~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~e 202 (1124)
......+..++.+|..++..|++++|+.+|++++.. ++....++..+|.+|..+|++++|+.+|++++.+
T Consensus 20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 89 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-- 89 (450)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 344566888999999999999999999999999976 4556889999999999999999999999999987
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh---hH---------HHHHHHHHHHHHHCCC
Q 001206 203 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP---NT---------AATYINVAMMEEGLGN 270 (1124)
Q Consensus 203 r~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp---~~---------a~al~nLA~iy~~lGd 270 (1124)
.|....++..+|.+|..+|++++|+.+|++++.+ .++.. .. ...+..+|.+|...|+
T Consensus 90 ------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 90 ------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158 (450)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445788999999999999999999999999873 22222 11 1124556888999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 001206 271 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES 350 (1124)
Q Consensus 271 yeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~ 350 (1124)
+++|+.+|++++.+. +....++..+|.+|..+|++++|+.+|++++++. +.+......+..+ +...
T Consensus 159 ~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~-~~~~ 224 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC--------VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-----NDNTEAFYKISTL-YYQL 224 (450)
T ss_dssp HHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-----CSCHHHHHHHHHH-HHHT
T ss_pred HHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHH-HHHc
Confidence 999999999999764 2345778999999999999999999999999863 4555443333322 3333
Q ss_pred HhHHHHHHHHhccCCCchhhhhcCCCcHHHH---------HHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 351 KAFEQQEAARNGTRKPDASIASKGHLSVSDL---------LDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 351 k~~e~aeAl~~~~~~~~~~~a~k~~~~vael---------l~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
+.++.+........... ......... +..++.++...|++++|+.+|++++++...
T Consensus 225 g~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~ 289 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 289 (450)
T ss_dssp TCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS
T ss_pred CCHHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 44444443332211110 111111111 233489999999999999999999987543
No 46
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.69 E-value=1.2e-15 Score=169.02 Aligned_cols=187 Identities=10% Similarity=-0.023 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 209 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~ 209 (1124)
..+...|.+|...|+|++|+.+|.+++.+..+. .+....+.+|.++|.+|..+|++++|+.+|++|+.++.+. .+.
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~ 112 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTP 112 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCH
Confidence 344455788999999999999999999998775 3445678899999999999999999999999999998653 233
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 001206 210 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 289 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~l 289 (1124)
...+.++.++|.+|.. |++++|+.+|++|+++..... +......++.++|.+|..+|+|++|+.+|++++.+....
T Consensus 113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~- 188 (307)
T 2ifu_A 113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM- 188 (307)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-
Confidence 4567899999999999 999999999999999987632 334567899999999999999999999999999998665
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 290 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 290 G~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
........++..+|.++..+|++++|+.+|++++ +
T Consensus 189 -~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~ 223 (307)
T 2ifu_A 189 -ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S 223 (307)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred -CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence 2244556789999999999999999999999998 5
No 47
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.69 E-value=4e-16 Score=194.13 Aligned_cols=176 Identities=19% Similarity=0.182 Sum_probs=157.0
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 166 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 166 d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
..|..+.+|++||.+|..+|++++|+.+|++|+++ +|+...++++||.+|..+|++++|+.+|++|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--- 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--- 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 46788999999999999999999999999999998 4666889999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 246 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 325 (1124)
Q Consensus 246 ~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALe 325 (1124)
.|..+.++++||.+|..+|++++|+++|++|+++. +..+.++++||.+|..+|++++|+.+|++|++
T Consensus 73 -----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 73 -----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN--------PAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46668899999999999999999999999999874 44568899999999999999999999999987
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001206 326 ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 405 (1124)
Q Consensus 326 i~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekA 405 (1124)
+ .+++ ..++..||.+|..+|++++|..+|+++
T Consensus 140 l-----~P~~-------------------------------------------~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 140 L-----KPDF-------------------------------------------PDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp H-----CSCC-------------------------------------------HHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred h-----CCCC-------------------------------------------hHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 6 3332 245778999999999999999999999
Q ss_pred HHHHhhhc
Q 001206 406 AKVKGNFY 413 (1124)
Q Consensus 406 LkL~~sl~ 413 (1124)
+++.....
T Consensus 172 l~l~~~~~ 179 (723)
T 4gyw_A 172 VSIVADQL 179 (723)
T ss_dssp HHHHHHHH
T ss_pred HHhChhHH
Confidence 99987755
No 48
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.69 E-value=1.4e-15 Score=167.19 Aligned_cols=190 Identities=11% Similarity=0.001 Sum_probs=152.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 001206 177 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 256 (1124)
Q Consensus 177 LG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~ 256 (1124)
.|.+|..+|+|++|+.+|++|+.+..+. .+....+.+|.++|.+|..+|++++|+.+|++|+.+..... +....+.
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~ 118 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--QFRRGAN 118 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--CHHHHHH
Confidence 3667888999999999999999998774 34456788999999999999999999999999999987643 3445678
Q ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 001206 257 TYINVAMMEEGL-GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD 335 (1124)
Q Consensus 257 al~nLA~iy~~l-GdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh 335 (1124)
++.++|.+|..+ |++++|+.+|++|+++.... .+....+.++.++|.+|..+|++++|+.+|++++++. +++
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~ 191 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS-----MGN 191 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----SSC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----hcC
Confidence 999999999996 99999999999999998643 2333446789999999999999999999999998762 221
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 336 LRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 336 ~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
... .......+..+|.++..+|++++|+.+|++++++.+...
T Consensus 192 ~~~------------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 192 RLS------------------------------------QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp TTT------------------------------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred Ccc------------------------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 100 002335678899999999999999999999998877654
No 49
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.68 E-value=9.5e-16 Score=167.98 Aligned_cols=193 Identities=12% Similarity=0.033 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM---TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 204 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~---~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~ 204 (1124)
....+...+..++..|+|++|+.++++++... ...+. ....+..+|.+|...+++++|+.+|++|+.+...
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~- 147 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT- 147 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC-
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc-
Confidence 34455667788899999999999999998742 12222 2446667999999999999999999999986432
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001206 205 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 205 lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei 284 (1124)
..+....+.++++||.+|..+|++++|+.+|++|+++++... .+.+..+.+++++|.+|..+|+|++|+.++++|+++
T Consensus 148 -~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 148 -GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp -CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 233344577899999999999999999999999999887752 366778889999999999999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHh
Q 001206 285 NQRLLGPDHIQTAASYHAIAIALSLMEA-YPLSVQHEQTTLQILRAK 330 (1124)
Q Consensus 285 ~~k~lG~d~p~~A~a~~nLA~ly~~lGd-~eeAle~lekALei~~k~ 330 (1124)
.... .+....+.+++++|.+|..+|+ +++|+.+|++|+.+++..
T Consensus 226 ~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 226 SCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHT--TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHc--CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 8765 4455678999999999999995 699999999999998764
No 50
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.68 E-value=1.9e-15 Score=157.90 Aligned_cols=182 Identities=12% Similarity=0.104 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
...++.+|..++..|+|++|+.+|++++.+. + +....+++++|.+|..+|++++|+.+|++++.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 71 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-----N--NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------- 71 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----T--TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-----C--CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence 4678999999999999999999999999872 1 033467888999999999999999999999975
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP----NTAATYINVAMMEEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp----~~a~al~nLA~iy~~lGdyeeAle~lekALei 284 (1124)
.|....++.++|.+|..+|++++|+.+|++++.+. ++++ ..+.++.++|.++..+|++++|+.+|++++++
T Consensus 72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 46678899999999999999999999999999862 2333 23477999999999999999999999999875
Q ss_pred HHHhcCCCcHH--HHHHHHHHHHHHHHcCCh---------------------------HHHHHHHHHHHHHHHHhcCCCC
Q 001206 285 NQRLLGPDHIQ--TAASYHAIAIALSLMEAY---------------------------PLSVQHEQTTLQILRAKLGPDD 335 (1124)
Q Consensus 285 ~~k~lG~d~p~--~A~a~~nLA~ly~~lGd~---------------------------eeAle~lekALei~~k~lG~dh 335 (1124)
. +. ...++.++|.+|..+|+. ++|+.+|++++++ .+++
T Consensus 147 ~--------p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l-----~p~~ 213 (228)
T 4i17_A 147 T--------SKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL-----SPNR 213 (228)
T ss_dssp S--------CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CTTC
T ss_pred C--------CCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCC
Confidence 3 45 578899999999988887 7777777777765 5666
Q ss_pred HHHHHHHH
Q 001206 336 LRTQDAAA 343 (1124)
Q Consensus 336 ~~t~~a~~ 343 (1124)
......+.
T Consensus 214 ~~~~~~l~ 221 (228)
T 4i17_A 214 TEIKQMQD 221 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65544433
No 51
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=9.3e-16 Score=176.72 Aligned_cols=246 Identities=15% Similarity=0.089 Sum_probs=177.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-CChhHHHHHHHHHH
Q 001206 143 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL-DHPDTMKSYGDLAV 221 (1124)
Q Consensus 143 GdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~-D~p~~a~ay~nLA~ 221 (1124)
++.+.++..+++.+...... .++...+.+|++||.+|..+|++++|+++|++|+++.+...+. .++..+.+|.|+|.
T Consensus 25 ~~~~~~l~~~e~~~~~~~~~--~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~ 102 (472)
T 4g1t_A 25 MEGENSLDDFEDKVFYRTEF--QNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAW 102 (472)
T ss_dssp TTTCCCHHHHHHHHHHHTTS--CC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 34455555666655443332 3455567889999999999999999999999999998876543 36778889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 001206 222 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL--GNVHVALRYLHKALKCNQRLLGPDHIQTAAS 299 (1124)
Q Consensus 222 iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~l--GdyeeAle~lekALei~~k~lG~d~p~~A~a 299 (1124)
+|..+|++++|+.+|++++.+.....+..++..+.++.++|.++... ++|++|+.+|++|+++. ++++ .+
T Consensus 103 ~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-----p~~~---~~ 174 (472)
T 4g1t_A 103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-----PKNP---EF 174 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-----TTCH---HH
T ss_pred HHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-----CCCH---HH
Confidence 99999999999999999999999887777777788899998877664 57999999999999874 4554 44
Q ss_pred HHHHHHH---HHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHH--HHHhHHHHHHHHhccCCCchhhhhc
Q 001206 300 YHAIAIA---LSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL-EYF--ESKAFEQQEAARNGTRKPDASIASK 373 (1124)
Q Consensus 300 ~~nLA~l---y~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~L-a~l--~~k~~e~aeAl~~~~~~~~~~~a~k 373 (1124)
+..+|.+ +...+++++|++.|++++++ .+++......+... ..+ ..+..+.+....... ..
T Consensus 175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l-----~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a--------l~ 241 (472)
T 4g1t_A 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRL-----NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEA--------LE 241 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCCTHHHHHHHHHH-----CSSCHHHHHHHHHHHHHCC------CHHHHHHHHH--------HH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhc-----CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--------HH
Confidence 4555555 45678889999999999986 46665543332211 111 111222222222111 11
Q ss_pred CCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 374 GHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 374 ~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
..+....++..+|.+|..+|++++|+.+|++++++.+.
T Consensus 242 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 242 KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 12344577899999999999999999999999988654
No 52
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.68 E-value=7.6e-15 Score=148.84 Aligned_cols=179 Identities=16% Similarity=0.102 Sum_probs=149.9
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001206 139 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 218 (1124)
Q Consensus 139 yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~n 218 (1124)
++..|+|++|+.+++... .+....+.++..+|.+|..+|++++|+.++++++.++++. .+.+....++.+
T Consensus 2 ~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~ 71 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALL--------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQ 71 (203)
T ss_dssp -----CHHHHHHHHHHHH--------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHH
Confidence 356899999999554431 2344678899999999999999999999999999998764 356778899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 001206 219 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 298 (1124)
Q Consensus 219 LA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~ 298 (1124)
+|.+|..+|++++|+.+|++++.+.+.. +.+....+.++.++|.+|..+|++++|+.+|++++.+.... .+....+.
T Consensus 72 l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~ 148 (203)
T 3gw4_A 72 VGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIAC 148 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHHH
Confidence 9999999999999999999999998853 32333678899999999999999999999999999998664 34455678
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 001206 299 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 330 (1124)
Q Consensus 299 a~~nLA~ly~~lGd~eeAle~lekALei~~k~ 330 (1124)
++.++|.+|..+|++++|+.+++++++++++.
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 88999999999999999999999999998765
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=3.1e-15 Score=160.64 Aligned_cols=224 Identities=15% Similarity=0.141 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHH
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDINER 203 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~----lGdydeAle~~~KALeI~er 203 (1124)
.+..++.+|..++..|++++|+.+|+++++. ....++++||.+|.. .+++++|+.+|++++.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--- 71 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--- 71 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---
Confidence 4677899999999999999999999999872 234689999999999 99999999999999875
Q ss_pred hcCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHH
Q 001206 204 ELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVAL 275 (1124)
Q Consensus 204 ~lg~D~p~~a~ay~nLA~iy~~----lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~----lGdyeeAl 275 (1124)
+ ...++++||.+|.. .+++++|+.+|+++++. + ...++++||.+|.. .+++++|+
T Consensus 72 ----~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 72 ----N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp ----T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ----C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHHHH
Confidence 1 36789999999999 99999999999999874 1 35788999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-
Q 001206 276 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES- 350 (1124)
Q Consensus 276 e~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~----lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~- 350 (1124)
.+|+++++.. ...++.+||.+|.. .+++++|+.+|+++++. .++ .+...|+.+..
T Consensus 135 ~~~~~a~~~~----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~---~a~~~lg~~~~~ 194 (273)
T 1ouv_A 135 EYFTKACDLN----------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KDS---PGCFNAGNMYHH 194 (273)
T ss_dssp HHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHH
T ss_pred HHHHHHHhcC----------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CCH---HHHHHHHHHHHc
Confidence 9999998742 24678899999999 99999999999999864 233 23344443333
Q ss_pred -----HhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHhh
Q 001206 351 -----KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT----KGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 351 -----k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~----qGdyeeAl~~yekALkL~~s 411 (1124)
+.++.+.......... + ....+..||.+|.. .+++++|+.+|++++++...
T Consensus 195 g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 195 GEGATKNFKEALARYSKACEL-------E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TCSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCCCccHHHHHHHHHHHHhC-------C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 3444443333221111 1 14678899999999 99999999999999988654
No 54
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.68 E-value=1.2e-15 Score=167.08 Aligned_cols=195 Identities=12% Similarity=0.027 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
....+...+..++..|+|++|+.++.+++...... .........++.+|.+|...|++++|+.++++|+.+... ..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~ 149 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT--GI 149 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC--SS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC--hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--CC
Confidence 34567788889999999999999999998763210 011234566788999999999999999999999987543 22
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN-TAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~-~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
+....+.+++++|.+|..+|++++|+.+|++|+.+.+... +... ...+++++|.+|..+|+|++|+.+|++++.+..
T Consensus 150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444678999999999999999999999999999887643 2333 337999999999999999999999999999985
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHh
Q 001206 287 RLLGPDHIQTAASYHAIAIALSLMEAYPLS-VQHEQTTLQILRAK 330 (1124)
Q Consensus 287 k~lG~d~p~~A~a~~nLA~ly~~lGd~eeA-le~lekALei~~k~ 330 (1124)
.. .+....+.+++++|.+|..+|++++| ..+|++|+.+++..
T Consensus 228 ~~--~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 228 RI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HT--TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hc--CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 43 34455788999999999999999999 88899999998654
No 55
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.67 E-value=2.4e-15 Score=178.37 Aligned_cols=251 Identities=15% Similarity=0.111 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------------------------HhcCCCCchhHHHHHHHHH
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLV---------------------------AVCGPYHRMTAGAYSLLAV 179 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e---------------------------~i~G~d~p~~A~ay~nLG~ 179 (1124)
.....++.+|..+...|++++|+.+|++++.... +.. ...+....++..||.
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV-DRHPEKAVTWLAVGI 381 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hhCcccHHHHHHHHH
Confidence 4567788899999999999999999998876411 000 012344667888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 001206 180 VLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 259 (1124)
Q Consensus 180 ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~ 259 (1124)
+|...|++++|+.+|++++.+ .+....++..+|.+|...|++++|+++|++++.+ .+....++.
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~ 445 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--------FQGTHLPYL 445 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--------TTTCSHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHH
Confidence 999999999999999998875 3445678889999999999999999999998864 233456788
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 001206 260 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ 339 (1124)
Q Consensus 260 nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~ 339 (1124)
.+|.+|...|++++|+++|++++++. +. ...++..+|.+|...|++++|+.+|++++++..+. +.+.....
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~p~~~~ 516 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALF-----QY---DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT-QSNEKPWA 516 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-----CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCSGGGH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----CC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc-ccchhhHH
Confidence 89999999999999999999998763 33 34678899999999999999999999999886543 21211112
Q ss_pred HHHHHHH--HHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 340 DAAAWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 340 ~a~~~La--~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
.++..++ +...+.++.+.......... .+....++..++.+|...|++++|+.+|++++++.+.
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGLLL--------STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 3333343 33334444444333221111 1223478999999999999999999999999998654
No 56
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.66 E-value=2.5e-15 Score=175.11 Aligned_cols=95 Identities=22% Similarity=0.212 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
..+..++.+|..++..|+|++|+.+|++++.+ +|....++..+|.+|..+|++++|+.+|++++.+
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 88 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEI------ 88 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 35788999999999999999999999999987 4566789999999999999999999999999987
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVK 237 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~e 237 (1124)
+|....++..+|.+|..+|++++|+.+|+
T Consensus 89 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 89 --KPDHSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --CCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35567889999999999999999998763
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.66 E-value=4.8e-16 Score=183.49 Aligned_cols=170 Identities=16% Similarity=0.108 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001206 127 ADGRQLLESSKTALDKGKL-EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdy-eeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~l 205 (1124)
..+..++.+|..++..|+| ++|+.+|++++++ ++....+|+.||.+|..+|++++|+.+|++++.+
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----- 166 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH----- 166 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence 4578899999999999999 9999999999987 5667889999999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC--------
Q 001206 206 GLDHPDTMKSYGDLAVFYYRL---------QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL-------- 268 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~l---------GdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~l-------- 268 (1124)
.|+ ..++.+||.+|..+ |++++|+.+|++++++ .|....++++||.+|..+
T Consensus 167 ---~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 167 ---CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp ---CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred ---CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHhhcccc
Confidence 244 48899999999999 9999999999999986 345577899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 269 GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 269 GdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
|++++|+.+|++|+++. +.......+++++|.+|..+|++++|+.+|++++++
T Consensus 235 g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 235 KISQQALSAYAQAEKVD-----RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-----GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-----CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999874 211256788999999999999999999999999886
No 58
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.66 E-value=6.7e-15 Score=174.47 Aligned_cols=245 Identities=11% Similarity=0.070 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--------
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE-------- 202 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~e-------- 202 (1124)
.+..++..|...|++++|+.+|++++.. +....++..+|.+|...|++++|+.+|++++....
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 344 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL---------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPL 344 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG---------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcC---------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHH
Confidence 3445577778889999999999887654 24466888899999999999999999988875421
Q ss_pred -------------------HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001206 203 -------------------RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 263 (1124)
Q Consensus 203 -------------------r~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~ 263 (1124)
+.. ...+....++..+|.+|...|++++|+++|++++++ .+....++..+|.
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~ 415 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLV-DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAH 415 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH-HHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH-hhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 000 012334567788888888888888888888888874 2344567888888
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 001206 264 MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 343 (1124)
Q Consensus 264 iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~ 343 (1124)
+|...|++++|+++|++++... + ....++..+|.+|...|++++|+.+|++++++ .+.++.+...+.
T Consensus 416 ~~~~~g~~~~A~~~~~~~~~~~-----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~ 482 (597)
T 2xpi_A 416 SFAIEGEHDQAISAYTTAARLF-----Q---GTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-----FQYDPLLLNELG 482 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTT-----T---TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCCCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-----c---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHH
Confidence 8999999999999888887653 2 23466778899999999999999999988865 455555433333
Q ss_pred HHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCc-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 344 WLEYFESKAFEQQEAARNGTRKPDASIASKGHLS-VSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 409 (1124)
Q Consensus 344 ~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~-vaell~~Lg~~y~~qGdyeeAl~~yekALkL~ 409 (1124)
.+ +...+.++.+.......... .......+. ...++..++.+|...|++++|+.+|++++++.
T Consensus 483 ~~-~~~~g~~~~A~~~~~~~~~~--~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 483 VV-AFNKSDMQTAINHFQNALLL--VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HH-HHHTTCHHHHHHHHHHHHHH--HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HH-HHHhCCHHHHHHHHHHHHHh--hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 22 23333444444333221111 000011222 36789999999999999999999999998875
No 59
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.66 E-value=9.7e-16 Score=176.93 Aligned_cols=244 Identities=13% Similarity=0.049 Sum_probs=189.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~l 205 (1124)
...+..++.+|..+...|++++|+.+|++++.. .+. ..++..+|.+|...|++++|+.++++++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 299 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKL----- 299 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-----
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc-----
Confidence 556788999999999999999999999999987 344 889999999999999999999999999875
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 206 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.+....++..+|.+|...|++++|+.+|++++.+ .+....++.++|.+|...|++++|+.+|++++...
T Consensus 300 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 368 (514)
T 2gw1_A 300 ---DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--------DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368 (514)
T ss_dssp ---CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--------CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS
T ss_pred ---CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 2344568999999999999999999999999975 23335688999999999999999999999999864
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--H---HHhHHHHHHHH
Q 001206 286 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF--E---SKAFEQQEAAR 360 (1124)
Q Consensus 286 ~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l--~---~k~~e~aeAl~ 360 (1124)
++ ...++..+|.+|..+|++++|+.+|++++.+........ ....+...++.+ . .+.++.+....
T Consensus 369 -----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 369 -----PE---APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY--VGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp -----TT---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS--SCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred -----cc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 22 346788999999999999999999999998754321100 001122333322 2 33444443333
Q ss_pred hccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhh
Q 001206 361 NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 412 (1124)
Q Consensus 361 ~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl 412 (1124)
...... .+....++..+|.+|..+|++++|+.+|++++++.+..
T Consensus 439 ~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 439 EKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 221111 12234678899999999999999999999999987654
No 60
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=1.2e-15 Score=160.46 Aligned_cols=168 Identities=21% Similarity=0.149 Sum_probs=136.0
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhc-----------CCHHHHHH
Q 001206 124 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-----------GDFNQATI 192 (1124)
Q Consensus 124 ~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~l-----------GdydeAle 192 (1124)
........++.+|.++...|++++|+.+|++++.+ .|....++.+||.+|..+ |++++|+.
T Consensus 34 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~ 105 (217)
T 2pl2_A 34 ENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105 (217)
T ss_dssp TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHH
Confidence 34445778899999999999999999999999988 567788999999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 001206 193 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 272 (1124)
Q Consensus 193 ~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdye 272 (1124)
.|++++.+ .|+...++.++|.+|..+|++++|+.+|++++++. ....++.++|.+|..+|+++
T Consensus 106 ~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~~la~~~~~~g~~~ 168 (217)
T 2pl2_A 106 VLKDAERV--------NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE---------DTPEIRSALAELYLSMGRLD 168 (217)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---------cchHHHHHHHHHHHHcCCHH
Confidence 99999997 45567889999999999999999999999999972 23677899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001206 273 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 324 (1124)
Q Consensus 273 eAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekAL 324 (1124)
+|+.+|++++++. |....++.++|.++..+|++++|+.+|+++.
T Consensus 169 ~A~~~~~~al~~~--------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 169 EALAQYAKALEQA--------PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHS--------TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHhC--------CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999874 3445788999999999999999999998764
No 61
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.65 E-value=7.2e-15 Score=169.66 Aligned_cols=250 Identities=14% Similarity=0.019 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
..+..++.+|..++..|+|++|+.+|++++.. ++ ...++..+|.+|..+|++++|+.++++++.+
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 68 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALEL--------KE-DPVFYSNLSACYVSVGDLKKVVEMSTKALEL------ 68 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc------
Confidence 35788999999999999999999999999987 23 2678999999999999999999999999986
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------------------hc----------------
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL-----------------------TC---------------- 247 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek-----------------------~~---------------- 247 (1124)
.|....++..+|.+|..+|++++|+.+|++++.+... ..
T Consensus 69 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 146 (514)
T 2gw1_A 69 --KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ 146 (514)
T ss_dssp --CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred --ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence 3556788999999999999999999999998764210 00
Q ss_pred --------C------------------------CCChhHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHhc--C
Q 001206 248 --------G------------------------PSHPNTAATYINVAMMEEG---LGNVHVALRYLHKALKCNQRLL--G 290 (1124)
Q Consensus 248 --------G------------------------~dhp~~a~al~nLA~iy~~---lGdyeeAle~lekALei~~k~l--G 290 (1124)
. -..+.....+..+|.++.. .|++++|+.+|++++....... .
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 226 (514)
T 2gw1_A 147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence 0 0002236677888888886 8999999999999999654443 2
Q ss_pred CCc----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--HhHHHHHHHHhccC
Q 001206 291 PDH----IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES--KAFEQQEAARNGTR 364 (1124)
Q Consensus 291 ~d~----p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~--k~~e~aeAl~~~~~ 364 (1124)
+++ +....++..+|.+|...|++++|+.+|+++++. .+. ..+...++.+.. +.++.+........
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-----FPR----VNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-----CCC----HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred ccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----Ccc----HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 232 667889999999999999999999999999876 333 233333333222 22222221111111
Q ss_pred CCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 001206 365 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 365 ~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~ 410 (1124)
. ..+....++..+|.+|...|++++|+.+|++++++..
T Consensus 298 ~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 335 (514)
T 2gw1_A 298 K--------LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335 (514)
T ss_dssp T--------TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred h--------cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh
Confidence 1 1112235678888888888888888888888887643
No 62
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.4e-14 Score=149.37 Aligned_cols=184 Identities=17% Similarity=0.137 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI-------- 200 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI-------- 200 (1124)
...++.+|.++...|++++|+.+|++++.+.... +.+.+....++..+|.+|..+|++++|+.+|++++.+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 116 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILT 116 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHH
Confidence 5678899999999999999999999999986543 2233444789999999999999999999999999984
Q ss_pred -----------HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC
Q 001206 201 -----------NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG 269 (1124)
Q Consensus 201 -----------~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lG 269 (1124)
+++.. ...+....++.++|.++...|++++|+.+|++++.+ .+....++.++|.+|..+|
T Consensus 117 ~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~ 187 (258)
T 3uq3_A 117 KLRNAEKELKKAEAEA-YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLM 187 (258)
T ss_dssp HHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHH-HcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhC
Confidence 11111 135778889999999999999999999999999986 2334678999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 001206 270 NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 330 (1124)
Q Consensus 270 dyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~ 330 (1124)
++++|+.+|++++++. +....++..+|.+|..+|++++|+.+|++++++....
T Consensus 188 ~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 240 (258)
T 3uq3_A 188 SFPEAIADCNKAIEKD--------PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV 240 (258)
T ss_dssp CHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhh
Confidence 9999999999999864 2335788999999999999999999999999987554
No 63
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.63 E-value=2.3e-14 Score=137.63 Aligned_cols=157 Identities=22% Similarity=0.239 Sum_probs=138.8
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
....+.++..+|.+|...|++++|+.++++++.+..+. .+....+.++.++|.+|..+|++++|+.+|++++.+....
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 44667899999999999999999999999999998774 3445667899999999999999999999999999998774
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 247 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 247 ~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
. +......++.++|.+|..+|++++|+.++++++.+.... .+....+.++..+|.+|..+|++++|+.++++++++
T Consensus 83 ~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 83 K--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp T--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C--CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3 455668899999999999999999999999999998765 345677889999999999999999999999999998
Q ss_pred HHH
Q 001206 327 LRA 329 (1124)
Q Consensus 327 ~~k 329 (1124)
.++
T Consensus 159 ~~~ 161 (164)
T 3ro3_A 159 SRE 161 (164)
T ss_dssp HTT
T ss_pred HHH
Confidence 643
No 64
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=2.1e-14 Score=149.06 Aligned_cols=180 Identities=20% Similarity=0.231 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
...++.+|.++...|++++|+.+|++++.+ .+....++..+|.+|..+|++++|+.++++++.+.
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------- 121 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALEL--------DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG------- 121 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------
Confidence 677888999999999999999999999987 34567899999999999999999999999999873
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
+....++..+|.+|...|++++|+.+|++++.+ .+....++..+|.+|...|++++|+.+|++++...
T Consensus 122 -~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 189 (243)
T 2q7f_A 122 -MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD--- 189 (243)
T ss_dssp -CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC---
T ss_pred -CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 233567899999999999999999999999986 23345688999999999999999999999998864
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 345 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~L 345 (1124)
+ ....++..+|.+|..+|++++|+.++++++++ .+++......+..+
T Consensus 190 --~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 190 --P---GHADAFYNAGVTYAYKENREKALEMLDKAIDI-----QPDHMLALHAKKLL 236 (243)
T ss_dssp --T---TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-----CTTCHHHHHHHTC-
T ss_pred --c---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-----CcchHHHHHHHHHH
Confidence 2 23567899999999999999999999999986 56666655554443
No 65
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=1.5e-14 Score=153.02 Aligned_cols=231 Identities=12% Similarity=-0.013 Sum_probs=166.4
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 001206 140 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 219 (1124)
Q Consensus 140 l~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nL 219 (1124)
...|++++|+.+|++++... ....+....++..+|.+|...|++++|+.+|++++.+ .|....++.++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l 83 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYL 83 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcc----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHHHH
Confidence 44678999999999998751 1234577899999999999999999999999999987 34456789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 001206 220 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAAS 299 (1124)
Q Consensus 220 A~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a 299 (1124)
|.+|...|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++++. +++. ..
T Consensus 84 a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~---~~ 147 (275)
T 1xnf_A 84 GIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----PNDP---FR 147 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH---HH
T ss_pred HHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCh---HH
Confidence 99999999999999999999986 23345788999999999999999999999999864 3333 22
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHH
Q 001206 300 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVS 379 (1124)
Q Consensus 300 ~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~va 379 (1124)
+..++ ++...|++++|+.++++++... +.+..... ...+ ++.....+.+.............. .+...
T Consensus 148 ~~~~~-~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~-~~~~-~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 215 (275)
T 1xnf_A 148 SLWLY-LAEQKLDEKQAKEVLKQHFEKS-----DKEQWGWN-IVEF-YLGNISEQTLMERLKADATDNTSL----AEHLS 215 (275)
T ss_dssp HHHHH-HHHHHHCHHHHHHHHHHHHHHS-----CCCSTHHH-HHHH-HTTSSCHHHHHHHHHHHCCSHHHH----HHHHH
T ss_pred HHHHH-HHHHhcCHHHHHHHHHHHHhcC-----CcchHHHH-HHHH-HHHhcCHHHHHHHHHHHhcccccc----ccccc
Confidence 22223 3466799999999999888752 22221111 1111 111111222222222222211110 11235
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 001206 380 DLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 380 ell~~Lg~~y~~qGdyeeAl~~yekALkL~~ 410 (1124)
.++..+|.+|..+|++++|+.+|++++++.+
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 7899999999999999999999999998754
No 66
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.62 E-value=1.5e-14 Score=142.60 Aligned_cols=169 Identities=17% Similarity=0.195 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
..+..++.+|..+...|++++|+.+|++++.. .+....++..+|.+|...|++++|+.++++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------ 71 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD------ 71 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 44677889999999999999999999998754 4455789999999999999999999999999987
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
.+....++.++|.++...|++++|+.+|++++.+ .+....++..+|.+|..+|++++|+.+|++++...
T Consensus 72 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 140 (186)
T 3as5_A 72 --APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR- 140 (186)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred --CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-
Confidence 2445678999999999999999999999999986 23345788999999999999999999999999864
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 287 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 287 k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
+ ....++..+|.+|..+|++++|+.++++++++.
T Consensus 141 ----~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 141 ----P---NEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp ----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----c---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2 235788999999999999999999999999875
No 67
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.61 E-value=8.3e-15 Score=172.09 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 209 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~ 209 (1124)
...++........|+|++|+.+|+++|++.++++|++|+.++.++.+||.+|..+|+|++|+.+++++|+++++.+|.+|
T Consensus 299 ~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 378 (433)
T 3qww_A 299 RNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS 378 (433)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444455555678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 001206 210 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 262 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA 262 (1124)
|+++..|+|||.+|..+|+|++|+.+|++|+++++..+|++||.+..++.+|.
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999888775
No 68
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.61 E-value=4.3e-14 Score=143.29 Aligned_cols=173 Identities=9% Similarity=-0.024 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
..+..+..+|.++...|++++|+.+|++++.++... .+.+..+.++.++|.+|..+|++++|+.++++++.++++. +
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~ 100 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL-P 100 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-C
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-C
Confidence 457888999999999999999999999999998765 4566788999999999999999999999999999998853 3
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
.+......++.++|.++..+|++++|+.++++++.+..... +....+.++.++|.+|..+|++++|+.+|++++++.+
T Consensus 101 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 101 EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 23336788999999999999999999999999999877643 3445677889999999999999999999999999997
Q ss_pred HhcCCCcHHHHHHHHHHHHH
Q 001206 287 RLLGPDHIQTAASYHAIAIA 306 (1124)
Q Consensus 287 k~lG~d~p~~A~a~~nLA~l 306 (1124)
+. .+....+.++..++.+
T Consensus 179 ~~--~~~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 179 EL--EDSEAVNELMTRLNGL 196 (203)
T ss_dssp HT--TCHHHHHHHHHHHHTT
T ss_pred Hc--CCHHHHHHHHhcccch
Confidence 76 3444455666655544
No 69
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.60 E-value=4.1e-14 Score=156.58 Aligned_cols=179 Identities=16% Similarity=0.057 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE---- 202 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~e---- 202 (1124)
.....++.+|.++...|++++|+.+|++++.+ .+....++..+|.+|..+|++++|+.++++++.+..
T Consensus 96 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 167 (368)
T 1fch_A 96 KHMEAWQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 167 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 34677889999999999999999999999987 455678999999999999999999999998776421
Q ss_pred --------------------------------------HhcCCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 203 --------------------------------------RELGLDHPD--TMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 203 --------------------------------------r~lg~D~p~--~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
+.+. ..|. ...++.++|.+|...|++++|+.+|++++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 246 (368)
T 1fch_A 168 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR-LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246 (368)
T ss_dssp GCC---------------CTTHHHHHHHHHHHHHHHHHHHHH-HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHH-hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1110 0122 4678899999999999999999999999986
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001206 243 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 322 (1124)
Q Consensus 243 ~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lek 322 (1124)
.|....++.++|.+|..+|++++|+.+|++++.+. +....++..+|.+|..+|++++|+.+|++
T Consensus 247 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 247 --------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------PGYIRSRYNLGISCINLGAHREAVEHFLE 310 (368)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred --------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34446789999999999999999999999999874 33457889999999999999999999999
Q ss_pred HHHHHHHh
Q 001206 323 TLQILRAK 330 (1124)
Q Consensus 323 ALei~~k~ 330 (1124)
++++....
T Consensus 311 al~~~~~~ 318 (368)
T 1fch_A 311 ALNMQRKS 318 (368)
T ss_dssp HHHHHHTC
T ss_pred HHHhCCCC
Confidence 99986544
No 70
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.60 E-value=5.3e-14 Score=135.08 Aligned_cols=156 Identities=22% Similarity=0.213 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~l 205 (1124)
...+..++.+|..++..|++++|+.+|++++.+.... .+....+.++..+|.+|..+|++++|+.++++++.+....
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~- 82 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL- 82 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Confidence 4567889999999999999999999999999998775 3455667899999999999999999999999999998774
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 206 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.+......++.++|.++..+|++++|+.++++++.+..... +......++.++|.+|..+|++++|+.++++++++.
T Consensus 83 -~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 83 -KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 34556688999999999999999999999999999987653 456778899999999999999999999999999987
Q ss_pred HH
Q 001206 286 QR 287 (1124)
Q Consensus 286 ~k 287 (1124)
++
T Consensus 160 ~~ 161 (164)
T 3ro3_A 160 RE 161 (164)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=1.4e-14 Score=171.00 Aligned_cols=194 Identities=18% Similarity=0.170 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001206 147 DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF-NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 225 (1124)
Q Consensus 147 eAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdy-deAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~ 225 (1124)
.....+.+++..+.... ...+..+.+++.+|.+|..+|+| ++|+.+|++++.+ .|....++++||.+|+.
T Consensus 79 ~~~~~~~~al~~l~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~ 149 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVL-GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWK 149 (474)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHH
Confidence 44445555555555443 33567789999999999999999 9999999999987 35567899999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 001206 226 LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL---------GNVHVALRYLHKALKCNQRLLGPDHIQT 296 (1124)
Q Consensus 226 lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~l---------GdyeeAle~lekALei~~k~lG~d~p~~ 296 (1124)
+|++++|+.+|++++++ .|. ..++.++|.+|..+ |++++|+.+|++++++. +..
T Consensus 150 ~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~ 212 (474)
T 4abn_A 150 KGDVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--------VLD 212 (474)
T ss_dssp HTCHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--------TTC
T ss_pred cCCHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--------CCC
Confidence 99999999999999975 233 48899999999999 99999999999999874 334
Q ss_pred HHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCch
Q 001206 297 AASYHAIAIALSLM--------EAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 368 (1124)
Q Consensus 297 A~a~~nLA~ly~~l--------Gd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~ 368 (1124)
..++++||.+|..+ |++++|+.+|++++++ .+..
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~--------------------------------- 254 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV-----DRKA--------------------------------- 254 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-----CGGG---------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-----CCCc---------------------------------
Confidence 67899999999999 9999999999999886 2200
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 369 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 369 ~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
.....++..+|.+|..+|++++|+.+|++++++...
T Consensus 255 -------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 255 -------SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp -------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 011245666677777777777777777777766543
No 72
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.59 E-value=1.8e-14 Score=169.22 Aligned_cols=124 Identities=15% Similarity=0.057 Sum_probs=119.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001206 181 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 260 (1124)
Q Consensus 181 y~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~n 260 (1124)
....|+|++|+.+|+++|++.++++|.+|+.++.++++||.+|..+|+|++|+.+|+++|+++++.+|++||.++..++|
T Consensus 308 ~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 308 AKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 001206 261 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 304 (1124)
Q Consensus 261 LA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA 304 (1124)
||.+|..+|+|++|+.+|++|+++.+..+|++||.++.++.+|.
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 99999999999999999999999999999999999998887764
No 73
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.58 E-value=2.1e-13 Score=142.33 Aligned_cols=198 Identities=11% Similarity=0.035 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 171 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 250 (1124)
Q Consensus 171 A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~d 250 (1124)
..++..+|.+++..|+|++|+.+|++++.+. + +....+++++|.+|..+|++++|+.+|++++.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 71 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-----N--NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------- 71 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----T--TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-----C--CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence 3789999999999999999999999999873 1 023467788999999999999999999999974
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 251 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI----QTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 251 hp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p----~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
.|....++.++|.+|..+|++++|+.+|++++++. ++++ ..+.++..+|.++..+|++++|+.+|++++++
T Consensus 72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 56678899999999999999999999999999875 3333 23477999999999999999999999999875
Q ss_pred HHHhcCCCCHH--HHHHHHHHHHHHHHhHHH--HHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHH
Q 001206 327 LRAKLGPDDLR--TQDAAAWLEYFESKAFEQ--QEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRK 402 (1124)
Q Consensus 327 ~~k~lG~dh~~--t~~a~~~La~l~~k~~e~--aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~y 402 (1124)
++. ...+...++.+....... .++...... . .....+......+.|++|+.+|
T Consensus 147 --------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~------------~---~~~~~~~~~~~~~~~~~A~~~~ 203 (228)
T 4i17_A 147 --------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASS------------N---KEKYASEKAKADAAFKKAVDYL 203 (228)
T ss_dssp --------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT------------C---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccC------------C---HHHHHHHHHHHHHHHHHHHHHH
Confidence 233 344555555443332222 111111100 0 1223344456678899999999
Q ss_pred HHHHHHHhh
Q 001206 403 TYVAKVKGN 411 (1124)
Q Consensus 403 ekALkL~~s 411 (1124)
++++++.+.
T Consensus 204 ~~a~~l~p~ 212 (228)
T 4i17_A 204 GEAVTLSPN 212 (228)
T ss_dssp HHHHHHCTT
T ss_pred HHHhhcCCC
Confidence 999998664
No 74
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.58 E-value=1.6e-14 Score=169.56 Aligned_cols=140 Identities=10% Similarity=0.052 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
++.++.....+..+|+|++|+.+|+++|++.++++|++|+.++.++.+||.+|..+|+|++|+.+++++|.++++.+|.+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 44555556667789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 268 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~l 268 (1124)
||+++..+++||.+|..+|++++|+.+|++|+++++..+|++||.+..++.+|+.+...+
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887653
No 75
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.58 E-value=6.1e-14 Score=153.61 Aligned_cols=197 Identities=10% Similarity=-0.021 Sum_probs=156.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 170 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 249 (1124)
Q Consensus 170 ~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~ 249 (1124)
....+...+..+...|+|++|+.++++++..... ..+.......++.+|.++...|++++|+.+|++|+.+.... .
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~ 149 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--I 149 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS--S
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--C
Confidence 3456677888999999999999999999886321 01112345667889999999999999999999999865432 2
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 001206 250 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 329 (1124)
Q Consensus 250 dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k 329 (1124)
+....+.+++++|.+|..+|++++|+.+|++|+++.+...+ +......+++++|.+|..+|+|++|+.++++++++...
T Consensus 150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 34446789999999999999999999999999998866522 22223478999999999999999999999999987532
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHH
Q 001206 330 KLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVST-LKRKTYVAKV 408 (1124)
Q Consensus 330 ~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeA-l~~yekALkL 408 (1124)
. + .......++..+|.+|..+|++++| ..+|++|+.+
T Consensus 229 ~-~-----------------------------------------~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 229 I-N-----------------------------------------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp T-T-----------------------------------------BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred c-C-----------------------------------------cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 1 0 1123456789999999999999999 8889999999
Q ss_pred Hhhhc
Q 001206 409 KGNFY 413 (1124)
Q Consensus 409 ~~sl~ 413 (1124)
.....
T Consensus 267 ~~~~~ 271 (293)
T 2qfc_A 267 FDILE 271 (293)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 88765
No 76
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=3.2e-14 Score=150.95 Aligned_cols=187 Identities=17% Similarity=0.149 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..++.+|.++...|++++|+.+|++++.+ ++....++..+|.+|..+|++++|+.+|++++.+
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------- 137 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP------- 137 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-------
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-------
Confidence 3667889999999999999999999999987 4555679999999999999999999999999876
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN---VHVALRYLHKALKC 284 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGd---yeeAle~lekALei 284 (1124)
.+....++.++|..++..+++++|+.+|++++++ .|....++..+|.++..+|+ +++|+.+|++++++
T Consensus 138 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 138 -TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp -SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 3556788999995555566999999999999986 23446788999999999999 99999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 001206 285 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 343 (1124)
Q Consensus 285 ~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~ 343 (1124)
..............++..||.+|..+|++++|+.+|++++++ .++++.....+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~l~ 262 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL-----DPTNKKAIDGLK 262 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHC
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CccHHHHHHHhh
Confidence 865432222335688999999999999999999999999987 567765544443
No 77
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.58 E-value=9e-14 Score=158.33 Aligned_cols=235 Identities=9% Similarity=-0.032 Sum_probs=190.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001206 132 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---------YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 202 (1124)
Q Consensus 132 Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~---------d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~e 202 (1124)
.++.|+.+...|+|++|++.|.+++......... .......++..||.+|..+|++++|++++++++.+..
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4667888899999999999999998764321100 0123346789999999999999999999999999876
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001206 203 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 282 (1124)
Q Consensus 203 r~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekAL 282 (1124)
.. .+......++.++|.++...|++++|+.++++++.+..... +....+.++.+||.+|..+|+|++|+.++++++
T Consensus 87 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 87 QF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp TS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 53 22334456788899999999999999999999999988754 566778999999999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 001206 283 KCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNG 362 (1124)
Q Consensus 283 ei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~ 362 (1124)
...... .+.+..+.++..+|.+|..+|++.+|..++++++.+......+ +.
T Consensus 163 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~------------------------- 213 (434)
T 4b4t_Q 163 REFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP--TQ------------------------- 213 (434)
T ss_dssp HHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HH-------------------------
T ss_pred HHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc--hH-------------------------
Confidence 887654 4567788999999999999999999999999999876543211 10
Q ss_pred cCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 363 TRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 363 ~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
....++..+|.++...++|.+|..+|.++++......
T Consensus 214 --------------~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~ 250 (434)
T 4b4t_Q 214 --------------TVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLT 250 (434)
T ss_dssp --------------HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence 1234567788888899999999999999998877655
No 78
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.57 E-value=1.8e-13 Score=149.80 Aligned_cols=193 Identities=11% Similarity=0.003 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 171 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT---MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 247 (1124)
Q Consensus 171 A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~---a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~ 247 (1124)
...+...+..+...|+|++|+.++++++... ...++. ...+..+|.++...+++++|+.+|++|+.+...
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-- 147 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-- 147 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC--
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc--
Confidence 3445566788899999999999999998742 223332 445667999999999999999999999985332
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 248 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 248 G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
..+....+.++.+||.+|..+|++++|+.+|++|+++.... ..+....+.+++++|.+|..+|+|++|+.++++++++.
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 12334457789999999999999999999999999988665 23667788899999999999999999999999999886
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCC-hHHHHHHHHHHH
Q 001206 328 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGR-NVSTLKRKTYVA 406 (1124)
Q Consensus 328 ~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGd-yeeAl~~yekAL 406 (1124)
.... .......++..+|.+|..+|+ +++|+.+|++|+
T Consensus 227 ~~~~------------------------------------------~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 227 CRIN------------------------------------------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHTT------------------------------------------BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHcC------------------------------------------cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4421 112345789999999999995 699999999999
Q ss_pred HHHhhhc
Q 001206 407 KVKGNFY 413 (1124)
Q Consensus 407 kL~~sl~ 413 (1124)
.+.....
T Consensus 265 ~i~~~~~ 271 (293)
T 3u3w_A 265 FFFDILE 271 (293)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9999766
No 79
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=6.8e-14 Score=161.60 Aligned_cols=183 Identities=11% Similarity=0.057 Sum_probs=153.9
Q ss_pred ChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001206 125 SSADGRQLLESSKTALDKGK-LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 203 (1124)
Q Consensus 125 ~s~~Ar~Ll~lG~~yl~qGd-yeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er 203 (1124)
.......++.+|.++...|+ +++|+.+|++++.+ +|....+|+++|.+|..+|++++|+.+|++||.+
T Consensus 127 ~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--- 195 (382)
T 2h6f_A 127 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--- 195 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---
T ss_pred CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 34457788999999999997 99999999999988 6778899999999999999999999999999997
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHH-----HHH
Q 001206 204 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVA-----LRY 277 (1124)
Q Consensus 204 ~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~-lGdyeeA-----le~ 277 (1124)
.|....+|+++|.++..+|++++|+.+|++++++ +|....+++++|.+|.. .|.+++| +.+
T Consensus 196 -----dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~ 262 (382)
T 2h6f_A 196 -----DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262 (382)
T ss_dssp -----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred -----CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 4667889999999999999999999999999986 56667899999999999 5555888 589
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 001206 278 LHKALKCNQRLLGPDHIQTAASYHAIAIALSLME--AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 345 (1124)
Q Consensus 278 lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lG--d~eeAle~lekALei~~k~lG~dh~~t~~a~~~L 345 (1124)
|++|+.+. +....+|+++|.+|..+| ++++|+..++++ ...+++......+..+
T Consensus 263 ~~~Al~l~--------P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~------~~~p~~~~al~~La~~ 318 (382)
T 2h6f_A 263 TLEMIKLV--------PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL------QPSHSSPYLIAFLVDI 318 (382)
T ss_dssp HHHHHHHS--------TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH------TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHC--------CCCHHHHHHHHHHHHccCccchHHHHHHHHHh------ccCCCCHHHHHHHHHH
Confidence 99999874 344578999999999988 689998877654 2356666554444433
No 80
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.57 E-value=2.3e-13 Score=143.45 Aligned_cols=177 Identities=14% Similarity=0.108 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
+..++.+|..++..|+|++|+.+|++++... +..+....+++.+|.+|+.+|++++|+..|++++.. .++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcC
Confidence 4578899999999999999999999999862 455666789999999999999999999999999987 355
Q ss_pred ChhHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHhcCCCChhHH--------------H
Q 001206 209 HPDTMKSYGDLAVFYYR------------------LQHTELALKYVKRALYLLHLTCGPSHPNTA--------------A 256 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~------------------lGdyeeAley~ekALei~ek~~G~dhp~~a--------------~ 256 (1124)
++....+++.+|.++.. +|++++|+.+|++++... ++++... .
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHH
Confidence 66667789999999886 578999999999998742 3333322 2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 257 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 325 (1124)
Q Consensus 257 al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALe 325 (1124)
....+|.+|..+|++++|+..|+++++.. ++.+....++..+|.+|..+|++++|+.+++++..
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 23678999999999999999999999876 56666778999999999999999999999986654
No 81
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.56 E-value=1.3e-13 Score=147.60 Aligned_cols=185 Identities=15% Similarity=0.102 Sum_probs=150.7
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
.+..+..++.+|..++..|+|++|+.+|++++.. .++++....+++.+|.+|+.+|++++|+.+|++++.+
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~---- 81 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI---- 81 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----
Confidence 4566789999999999999999999999999886 3455566889999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH--------------HHHH
Q 001206 247 CGPSHPNTAATYINVAMMEEG--------LGNVHVALRYLHKALKCNQRLLGPDHIQTAASY--------------HAIA 304 (1124)
Q Consensus 247 ~G~dhp~~a~al~nLA~iy~~--------lGdyeeAle~lekALei~~k~lG~d~p~~A~a~--------------~nLA 304 (1124)
.++++....+++++|.+|.. +|++++|+.+|++++... +++.....++ +.+|
T Consensus 82 -~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la 155 (261)
T 3qky_A 82 -YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEAA 155 (261)
T ss_dssp -CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999 999999999999999875 4444444444 8899
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHH
Q 001206 305 IALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDY 384 (1124)
Q Consensus 305 ~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~ 384 (1124)
.+|..+|++++|+.+|+++++.. ++++.. .+++..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~----------------------------------------~~a~~~ 190 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAY-----PDTPWA----------------------------------------DDALVG 190 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----TTSTTH----------------------------------------HHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHC-----CCCchH----------------------------------------HHHHHH
Confidence 99999999999999999998752 332222 233445
Q ss_pred HHHHHHHc----------CChHHHHHHHHHHHHHHhh
Q 001206 385 INPSHDTK----------GRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 385 Lg~~y~~q----------GdyeeAl~~yekALkL~~s 411 (1124)
+|.+|..+ |++++|+.+|+++++..+.
T Consensus 191 l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 191 AMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 55555444 8899999999999887654
No 82
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=2.2e-13 Score=143.17 Aligned_cols=175 Identities=15% Similarity=0.076 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
...++.+|.++...|++++|+.+|++++.+ .+....++..+|.+|..+|++++|+.++++++. ...
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~ 136 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALAS--------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTL 136 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------Ccc
Confidence 567888999999999999999999999987 345577999999999999999999999999987 134
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
.+....++.++|.+|...|++++|+.+|++++.+ .+....++..+|.+|..+|++++|+.+|++++...
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--- 205 (252)
T 2ho1_A 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG--- 205 (252)
T ss_dssp CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 5667889999999999999999999999999985 23336778999999999999999999999988643
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHH
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 338 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t 338 (1124)
+ ....++..++.+|...|++++|..++++++++ .++++..
T Consensus 206 --~---~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~ 245 (252)
T 2ho1_A 206 --G---QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL-----YPGSLEY 245 (252)
T ss_dssp --C---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSHHH
T ss_pred --c---CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCCHHH
Confidence 2 23466888999999999999999999999876 4555543
No 83
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.56 E-value=2.7e-14 Score=167.53 Aligned_cols=133 Identities=17% Similarity=0.064 Sum_probs=127.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 001206 179 VVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATY 258 (1124)
Q Consensus 179 ~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al 258 (1124)
.-+..+|+|++|+.++++++++.++++|.+|+.++.++.+||.+|..+|+|++|+.+++++|+++++.+|++||.++..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 001206 259 INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 311 (1124)
Q Consensus 259 ~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lG 311 (1124)
++||.+|..+|++++|+.+|++|+++.+..+|++||.++.++.+|+.+...++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998886543
No 84
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.55 E-value=2.9e-13 Score=141.31 Aligned_cols=165 Identities=15% Similarity=0.137 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH----------------HHHHHHhcCCHHHHHH
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSL----------------LAVVLYHTGDFNQATI 192 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~n----------------LG~ly~~lGdydeAle 192 (1124)
+..++..|..++..|++++|+.+|++++.+ +|....+++. ||.+|..+|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 456788999999999999999999999987 5667778888 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-
Q 001206 193 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV- 271 (1124)
Q Consensus 193 ~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdy- 271 (1124)
+|++++.+ +|+...++.++|.+|..+|++++|+.+|++++++ +|....+++++|.+|..+|+.
T Consensus 76 ~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 76 FYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHH
Confidence 99999997 4566789999999999999999999999999986 455678899999999876643
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 272 -HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 272 -eeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
..+...|++++ ... + ....++.+|.++..+|++++|+.+|++++++
T Consensus 140 ~~~~~~~~~~~~-------~~~-~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 140 KKKLETDYKKLS-------SPT-K-MQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHC----------CCC-H-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHh-------CCC-c-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34455555443 122 2 2346778899999999999999999999986
No 85
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.54 E-value=5.8e-13 Score=143.96 Aligned_cols=177 Identities=18% Similarity=0.109 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE----- 202 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~e----- 202 (1124)
....++.+|.++...|++++|+.+|++++.+ .+....++..+|.+|...|++++|+.++++++.+..
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 125 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHH
Confidence 3566788899999999999999999999987 455677899999999999999999999988875411
Q ss_pred -------------------------------------HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 203 -------------------------------------RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 203 -------------------------------------r~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
+... ..+....++..+|.+|...|++++|+.+|++++.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--- 201 (327)
T 3cv0_A 126 GSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE-MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--- 201 (327)
T ss_dssp --------------------CCTTSHHHHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence 1100 12334577899999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 246 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 325 (1124)
Q Consensus 246 ~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALe 325 (1124)
.+....++.++|.+|...|++++|+.+|++++++. +....++..+|.+|..+|++++|+.+|++++.
T Consensus 202 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 202 -----RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 24446788999999999999999999999999864 22356788999999999999999999999998
Q ss_pred HHHH
Q 001206 326 ILRA 329 (1124)
Q Consensus 326 i~~k 329 (1124)
+...
T Consensus 269 ~~~~ 272 (327)
T 3cv0_A 269 MQVG 272 (327)
T ss_dssp HHTT
T ss_pred hCCc
Confidence 7543
No 86
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=9.2e-13 Score=134.47 Aligned_cols=176 Identities=15% Similarity=0.011 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-GDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~l-GdydeAle~~~KALeI~er~lg~ 207 (1124)
...++.+|.++...|++++|+.+|++++.+ .+....++..+|.+|... |++++|+.++++++. ..
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~ 107 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSI--------KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA------DP 107 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------ST
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------Cc
Confidence 557788999999999999999999999987 345577899999999999 999999999999987 13
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
..+....++.++|.+|...|++++|+.+|++++.. .+....++..+|.+|..+|++++|+.+|++++...
T Consensus 108 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-- 177 (225)
T 2vq2_A 108 TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-- 177 (225)
T ss_dssp TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--
T ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 45667889999999999999999999999999885 23346788999999999999999999999999875
Q ss_pred hcCC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 001206 288 LLGP-DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ 339 (1124)
Q Consensus 288 ~lG~-d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~ 339 (1124)
+ .. ...+..++.++...|++++|..+++.+.+. .++++...
T Consensus 178 ---~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~ 219 (225)
T 2vq2_A 178 ---EVLQ---ADDLLLGWKIAKALGNAQAAYEYEAQLQAN-----FPYSEELQ 219 (225)
T ss_dssp ---CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred ---CCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-----CCCCHHHH
Confidence 3 33 345677889999999999999998887664 46666543
No 87
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.2e-12 Score=149.03 Aligned_cols=202 Identities=10% Similarity=0.030 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
..++..+|.+|..+|++++|+.+|.+++.+.... ........++..+|.++...|++++|+.++++++.+.... .+
T Consensus 55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 130 (434)
T 4b4t_Q 55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KR 130 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--Cc
Confidence 4568899999999999999999999999987654 2223445677889999999999999999999999998774 34
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
....+.++.+||.+|..+|+|++|+.++++++...... .+.+..+.++.++|.+|..+|+|++|..+|++++.+....
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 131 VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI 208 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence 56678899999999999999999999999999877654 3577889999999999999999999999999999988665
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHH
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 337 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~ 337 (1124)
+..+...+..+..+|.++...++|.+|..+|.++++.+.......+..
T Consensus 209 -~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~ 256 (434)
T 4b4t_Q 209 -YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYE 256 (434)
T ss_dssp -CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHH
T ss_pred -CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 233445678899999999999999999999999999988876665544
No 88
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=3e-13 Score=133.27 Aligned_cols=172 Identities=14% Similarity=0.188 Sum_probs=146.0
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 168 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 247 (1124)
Q Consensus 168 p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~ 247 (1124)
...+.++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.+|++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----- 71 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD----- 71 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence 456778999999999999999999999998764 2345778999999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 248 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 248 G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
.+....++.++|.+|...|++++|+.+|++++... + ....++..+|.+|..+|++++|+.+++++++..
T Consensus 72 ---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 72 ---APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-----P---INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----c---HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 23446788999999999999999999999999874 2 235678899999999999999999999887641
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 328 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 407 (1124)
Q Consensus 328 ~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALk 407 (1124)
+.+ ..++..+|.++..+|++++|+.+|+++++
T Consensus 141 -----~~~-------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 141 -----PNE-------------------------------------------GKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp -----TTC-------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----ccc-------------------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 24567889999999999999999999999
Q ss_pred HHhh
Q 001206 408 VKGN 411 (1124)
Q Consensus 408 L~~s 411 (1124)
+...
T Consensus 173 ~~~~ 176 (186)
T 3as5_A 173 LDEG 176 (186)
T ss_dssp HHHC
T ss_pred cCCC
Confidence 8764
No 89
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=3.3e-12 Score=135.04 Aligned_cols=176 Identities=13% Similarity=0.035 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~l 205 (1124)
...+..++.+|..++..|++++|+.+|++++.+ ++....++..+|.+|..+|++++|+.+|++++.+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----- 106 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----- 106 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----
Confidence 356788999999999999999999999999987 4556789999999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Q 001206 206 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC- 284 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei- 284 (1124)
.|....++.++|.+|..+|++++|+.+|++++.+ .+++. .....++ ++...|++++|+.+|++++..
T Consensus 107 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~---~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 107 ---DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-----DPNDP---FRSLWLY-LAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp ---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHH-HHHHHHCHHHHHHHHHHHHHHS
T ss_pred ---CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCh---HHHHHHH-HHHHhcCHHHHHHHHHHHHhcC
Confidence 2344678999999999999999999999999985 22333 2222223 335568888888888766543
Q ss_pred -------------------------HHHhcCCC---cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 285 -------------------------NQRLLGPD---HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 285 -------------------------~~k~lG~d---~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
+.+.+... .+....++..+|.+|..+|++++|+.+|++++.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 175 DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 22221111 1122577888999999999999999999988865
No 90
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.49 E-value=1.5e-12 Score=144.02 Aligned_cols=166 Identities=9% Similarity=0.018 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
....+..++..+...+++++|+..+++.+.. ..+|....++..+|.+|...|++++|+.++++
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----------- 126 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----------- 126 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----------
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----------
Confidence 4556666777777788888888887776643 12455667788888888888888888887766
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
+....++..+|.+|..+|++++|+++|++++.+ .+++.. ......+..++...|++++|+.+|+++++..
T Consensus 127 --~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-----~p~~~~-~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-- 196 (291)
T 3mkr_A 127 --GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-----DEDATL-TQLATAWVSLAAGGEKLQDAYYIFQEMADKC-- 196 (291)
T ss_dssp --CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CcCcHH-HHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--
Confidence 123457778888888888888888888888775 122211 1111112233344578888888888887753
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 288 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
+ ....+++++|.+|..+|++++|+.+|++++++
T Consensus 197 ---p---~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 197 ---S---PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp ---C---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 23567788888888888888888888888765
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.48 E-value=3.8e-14 Score=140.98 Aligned_cols=146 Identities=16% Similarity=0.169 Sum_probs=122.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 001206 135 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 214 (1124)
Q Consensus 135 lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ 214 (1124)
+|.++..+|++++|+..|++++.. .+....+++.||.+|+.+|+|++|+.+|++++.+ +|+...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~ 66 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPK 66 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHH
Confidence 577788889999999999998754 5667778999999999999999999999999998 456678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHhcCCCc
Q 001206 215 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY-LHKALKCNQRLLGPDH 293 (1124)
Q Consensus 215 ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~-lekALei~~k~lG~d~ 293 (1124)
++.+||.+|..+|++++|+.+|++++++ .|....+++++|.+|..+|++++|... +++|+++. +++
T Consensus 67 a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-----P~~ 133 (150)
T 4ga2_A 67 AHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-----PGS 133 (150)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-----TTC
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-----cCC
Confidence 9999999999999999999999999986 455577899999999999999887765 58999875 444
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 001206 294 IQTAASYHAIAIALSLMEA 312 (1124)
Q Consensus 294 p~~A~a~~nLA~ly~~lGd 312 (1124)
..++..++.++..+|+
T Consensus 134 ---~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 134 ---PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp ---HHHHHHHHHHHHTCCC
T ss_pred ---HHHHHHHHHHHHHhCc
Confidence 4567777888887775
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.47 E-value=1.2e-13 Score=170.49 Aligned_cols=162 Identities=14% Similarity=-0.027 Sum_probs=138.2
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 001206 140 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 219 (1124)
Q Consensus 140 l~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nL 219 (1124)
+..|++++|+..|+++++......+..++....++..+|.+|..+|++++|+..|++++.+. |+...+++++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--------GWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------CCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--------cchHHHHHHH
Confidence 67899999999999998322222223467778899999999999999999999999999873 4457899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 001206 220 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAAS 299 (1124)
Q Consensus 220 A~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a 299 (1124)
|.+|..+|++++|+++|++|+++ .|....+++++|.+|..+|++++ +.+|++|+++. +....+
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--------P~~~~a 536 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDT--------FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--------DGVISA 536 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--------TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--------CchHHH
Confidence 99999999999999999999986 34556788999999999999999 99999999874 334578
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 300 YHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 300 ~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
++++|.+|..+|++++|+.+|++++++
T Consensus 537 ~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 537 AFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 999999999999999999999988764
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.45 E-value=4.6e-12 Score=133.47 Aligned_cols=179 Identities=18% Similarity=0.141 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 170 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 249 (1124)
Q Consensus 170 ~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~ 249 (1124)
....++.+|..++..|+|++|+.+|++++.. .++++....+++++|.+|+.+|++++|+.+|++++.+ .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P 72 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NP 72 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----Cc
Confidence 3567899999999999999999999999986 3445566789999999999999999999999999986 34
Q ss_pred CChhHHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHHHHHhcCCCcHHHH--------------
Q 001206 250 SHPNTAATYINVAMMEEG------------------LGNVHVALRYLHKALKCNQRLLGPDHIQTA-------------- 297 (1124)
Q Consensus 250 dhp~~a~al~nLA~iy~~------------------lGdyeeAle~lekALei~~k~lG~d~p~~A-------------- 297 (1124)
+++....+++.+|.+|.. +|++++|+..|+++++.. +++....
T Consensus 73 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~ 147 (225)
T 2yhc_A 73 THPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLA 147 (225)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHH
Confidence 566667788899998876 678999999999998764 3333222
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCc
Q 001206 298 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLS 377 (1124)
Q Consensus 298 ~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~ 377 (1124)
.....+|.+|..+|++++|+..|+++++.+ ++++ .
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~----------------------------------------~ 182 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQ----------------------------------------A 182 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSH----------------------------------------H
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCC----------------------------------------c
Confidence 223678889999999999999999888763 2222 1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 378 VSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 408 (1124)
Q Consensus 378 vaell~~Lg~~y~~qGdyeeAl~~yekALkL 408 (1124)
..+++..+|.+|..+|++++|+.+++++...
T Consensus 183 ~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 183 TRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 2356788999999999999999999876653
No 94
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.44 E-value=3.6e-12 Score=136.70 Aligned_cols=191 Identities=17% Similarity=0.118 Sum_probs=149.6
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 001206 168 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLL 243 (1124)
Q Consensus 168 p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~----lGdyeeAley~ekALei~ 243 (1124)
+..+.+++.+|.+|...|++++|+.+|++++.. + ...++++||.+|.. .+++++|+.+|++++++
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~- 71 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL-------K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL- 71 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-
Confidence 345678999999999999999999999999871 2 24688999999999 99999999999999874
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHH
Q 001206 244 HLTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPL 315 (1124)
Q Consensus 244 ek~~G~dhp~~a~al~nLA~iy~~----lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~----lGd~ee 315 (1124)
+ ...++++||.+|.. .+++++|+.+|+++++.. ...++++||.+|.. .+++++
T Consensus 72 ------~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~~~~~~~~~~~ 132 (273)
T 1ouv_A 72 ------N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----------YAEGCASLGGIYHDGKVVTRDFKK 132 (273)
T ss_dssp ------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ------C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----------CccHHHHHHHHHHcCCCcccCHHH
Confidence 1 35788999999999 999999999999998741 34688999999999 999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHH
Q 001206 316 SVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES------KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH 389 (1124)
Q Consensus 316 Ale~lekALei~~k~lG~dh~~t~~a~~~La~l~~------k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y 389 (1124)
|+.+|+++++. + +.. +...++.+.. +..+.+.......... .....+..+|.+|
T Consensus 133 A~~~~~~a~~~-----~--~~~---a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~ 192 (273)
T 1ouv_A 133 AVEYFTKACDL-----N--DGD---GCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMY 192 (273)
T ss_dssp HHHHHHHHHHT-----T--CHH---HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-----C--cHH---HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHH
Confidence 99999999874 2 332 3334443332 2344433333221111 1236788999999
Q ss_pred HH----cCChHHHHHHHHHHHHH
Q 001206 390 DT----KGRNVSTLKRKTYVAKV 408 (1124)
Q Consensus 390 ~~----qGdyeeAl~~yekALkL 408 (1124)
.. .+++++|+.+|++++++
T Consensus 193 ~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 193 HHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HHTCSSCCCHHHHHHHHHHHHHT
T ss_pred HcCCCCCccHHHHHHHHHHHHhC
Confidence 99 99999999999999876
No 95
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.42 E-value=2e-11 Score=143.41 Aligned_cols=158 Identities=16% Similarity=0.114 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 001206 128 DGRQLLESSKTALD----KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALD 199 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~----qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~----lGdydeAle~~~KALe 199 (1124)
++..++.+|..|+. .+++++|+.+|+++++. ....+++.||.+|.. .+++++|+.+|+++++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 107 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL 107 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 35677788888887 78888888888888753 235678888888888 8888888888888865
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCH
Q 001206 200 INERELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNV 271 (1124)
Q Consensus 200 I~er~lg~D~p~~a~ay~nLA~iy~~----lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~----lGdy 271 (1124)
. . ...++++||.+|.. .+++++|+.+|+++.+. + ...++++||.+|.. .+++
T Consensus 108 ~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 108 K-------G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------G---RDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp T-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred C-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCH
Confidence 3 1 24567788888888 78888888888887652 1 24567788888887 7788
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 001206 272 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQ 325 (1124)
Q Consensus 272 eeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~----lGd~eeAle~lekALe 325 (1124)
++|+++|+++++. . ...+++.||.+|.. .+++++|+.+|+++.+
T Consensus 168 ~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 168 VMAREWYSKAAEQ-------G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp HHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-------C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 8888888887653 1 24567777888877 7788888888877764
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.42 E-value=3.2e-13 Score=134.30 Aligned_cols=141 Identities=13% Similarity=0.054 Sum_probs=115.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001206 176 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 255 (1124)
Q Consensus 176 nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a 255 (1124)
.||.++..+|++++|+..+++++.. .|+....+++||.+|+.+|+|++|+++|++++++ +|...
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence 5899999999999999999998765 4666778899999999999999999999999986 45567
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHHHHhcCCC
Q 001206 256 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH-EQTTLQILRAKLGPD 334 (1124)
Q Consensus 256 ~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~-lekALei~~k~lG~d 334 (1124)
.++.++|.+|..+|++++|+.+|++++++. |....+++++|.+|..+|++++|... +++|+++ .++
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-----~P~ 132 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVELN--------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-----FPG 132 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-----STT
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----CcC
Confidence 899999999999999999999999999874 33457899999999999999877665 6899986 578
Q ss_pred CHHHHHHHHHH
Q 001206 335 DLRTQDAAAWL 345 (1124)
Q Consensus 335 h~~t~~a~~~L 345 (1124)
++........|
T Consensus 133 ~~~~~~l~~~l 143 (150)
T 4ga2_A 133 SPAVYKLKEQL 143 (150)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 87665544433
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.42 E-value=3e-12 Score=133.57 Aligned_cols=168 Identities=17% Similarity=0.063 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH----------------HHHHHHHcCCHHHHHH
Q 001206 171 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD----------------LAVFYYRLQHTELALK 234 (1124)
Q Consensus 171 A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~n----------------LA~iy~~lGdyeeAle 234 (1124)
+..+...|..+...|++++|+.+|++++.+ .|+...+++. +|.+|..+|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 456788999999999999999999999987 4666667776 6666666677777766
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChH
Q 001206 235 YVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 314 (1124)
Q Consensus 235 y~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~e 314 (1124)
+|++++++ +|....+++++|.+|..+|++++|+.+|++++++. |....+++++|.+|..+|+.+
T Consensus 76 ~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 76 FYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--------ADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHHhHHH
Confidence 66666664 33445566666666666666666666666666653 223455666666665444322
Q ss_pred --HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHc
Q 001206 315 --LSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTK 392 (1124)
Q Consensus 315 --eAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~q 392 (1124)
.|...++++ ..+. .....+..+|.++..+
T Consensus 140 ~~~~~~~~~~~----------------------------------------~~~~---------~~~~a~~~~g~~~~~~ 170 (208)
T 3urz_A 140 KKKLETDYKKL----------------------------------------SSPT---------KMQYARYRDGLSKLFT 170 (208)
T ss_dssp HHHHHHHHC-------------------------------------------CCC---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------------------------------hCCC---------chhHHHHHHHHHHHHc
Confidence 111111111 0010 1122455677888888
Q ss_pred CChHHHHHHHHHHHHHHhh
Q 001206 393 GRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 393 GdyeeAl~~yekALkL~~s 411 (1124)
|+|++|+.+|++++++.+.
T Consensus 171 ~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 171 TRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HTHHHHHHHHHHHTTTSCC
T ss_pred cCHHHHHHHHHHHHHhCCC
Confidence 9999999999999988764
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.40 E-value=2.5e-12 Score=141.38 Aligned_cols=170 Identities=12% Similarity=0.030 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
.....++.+|..++..|++++|+.+|++++.+ +|....+++.||.+|..+|++++|+.++++++..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~------ 180 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ------ 180 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG------
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh------
Confidence 34667899999999999999999999999987 5677889999999999999999999999998765
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
.|+.......++..+...++.++|+..|++++.+ +|....++++||.+|...|++++|+..|+++++..
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~- 249 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD- 249 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-
Confidence 2344566777888888999999999999999985 56667889999999999999999999999999874
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 287 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 287 k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
+++ ....++.+|+.+|..+|+.++|...|++++..
T Consensus 250 ----p~~-~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 250 ----LTA-ADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp ----TTG-GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ----ccc-ccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 222 22578899999999999999999999999865
No 99
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.40 E-value=1.4e-11 Score=136.08 Aligned_cols=177 Identities=10% Similarity=-0.039 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
....++.+|.++...|++++|+.+|++ +....++..+|.+|..+|++++|+..|++++.+ .+
T Consensus 100 ~~~~~~~la~~~~~~g~~~~Al~~l~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-----~p 161 (291)
T 3mkr_A 100 NTTFLLMAASIYFYDQNPDAALRTLHQ-------------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-----DE 161 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTT-------------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHhC-------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----Cc
Confidence 456788999999999999999999886 244568999999999999999999999999887 23
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
++.. ......+..++...|++++|+.+|+++++. +|....+++++|.+|..+|++++|+.+|++++.+.
T Consensus 162 ~~~~-~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-- 230 (291)
T 3mkr_A 162 DATL-TQLATAWVSLAAGGEKLQDAYYIFQEMADK--------CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-- 230 (291)
T ss_dssp TCHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CcHH-HHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 3321 111111123334558999999999999985 34457789999999999999999999999999874
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 001206 288 LLGPDHIQTAASYHAIAIALSLMEAYPL-SVQHEQTTLQILRAKLGPDDLRTQDAAAW 344 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~~lGd~ee-Ale~lekALei~~k~lG~dh~~t~~a~~~ 344 (1124)
|....++.++|.++..+|++.+ |..++++++++ .++|+.+.+....
T Consensus 231 ------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~-----~P~~~~~~d~~~~ 277 (291)
T 3mkr_A 231 ------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA-----HRSHPFIKEYRAK 277 (291)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----CTTCHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----CCCChHHHHHHHH
Confidence 3345678999999999999986 56888988876 6899877665443
No 100
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.39 E-value=1.8e-11 Score=143.77 Aligned_cols=221 Identities=13% Similarity=0.030 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 001206 128 DGRQLLESSKTALD----KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALD 199 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~----qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~----lGdydeAle~~~KALe 199 (1124)
.+.+++.+|..|.. .+++++|+.+|+++.+. ....+++.||.+|.. .+++++|+.+|+++++
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 143 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE 143 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 36788899999999 99999999999999753 235688999999998 8999999999999876
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCH
Q 001206 200 INERELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNV 271 (1124)
Q Consensus 200 I~er~lg~D~p~~a~ay~nLA~iy~~----lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~----lGdy 271 (1124)
. . ...++++||.+|.. .+++++|+++|+++++. .+ ..++++||.+|.. .+++
T Consensus 144 ~-------~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 144 Q-------G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------GN---VWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp T-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCH
T ss_pred C-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHhcCCCCCcCH
Confidence 3 1 35688999999998 88999999999999863 12 5678899999998 8999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 001206 272 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 347 (1124)
Q Consensus 272 eeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~----lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~ 347 (1124)
++|+.+|+++++. .+ ..+++.||.+|.. .+++++|+.+|+++.+. .+.. +..+|+.
T Consensus 204 ~~A~~~~~~a~~~-------~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~~~---a~~~lg~ 263 (490)
T 2xm6_A 204 AISAQWYRKSATS-------GD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-------GNSI---AQFRLGY 263 (490)
T ss_dssp HHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-------TCHH---HHHHHHH
T ss_pred HHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CCHH---HHHHHHH
Confidence 9999999998763 12 3577888999987 88999999999888753 2332 3333433
Q ss_pred HHH------HhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHH
Q 001206 348 FES------KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTK-----GRNVSTLKRKTYVAKV 408 (1124)
Q Consensus 348 l~~------k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~q-----GdyeeAl~~yekALkL 408 (1124)
+.. +..+.+.......... ...+.+..||.+|... +++++|+.+|+++++.
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQ----------GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 322 2222222222211110 1234566777777776 7777777777777653
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.39 E-value=2.1e-12 Score=154.62 Aligned_cols=153 Identities=13% Similarity=0.066 Sum_probs=120.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001206 142 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 221 (1124)
Q Consensus 142 qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~ 221 (1124)
.|++++|+.+|++++++ ++....++..+|.+|..+|++++|+.+|++++.+ .|+...++.++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGR 65 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 47899999999999876 4566789999999999999999999999999986 3555788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001206 222 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 301 (1124)
Q Consensus 222 iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~ 301 (1124)
+|..+|++++|+++|++++++ .|....+++++|.+|..+|++++|+++|++++++. +....++.
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~ 129 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--------PEEPYITA 129 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHH
Confidence 999999999999999999986 34457789999999999999999999999999874 23357889
Q ss_pred HHHHHHHHc---CChHHHHHHHHHHHHH
Q 001206 302 AIAIALSLM---EAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 302 nLA~ly~~l---Gd~eeAle~lekALei 326 (1124)
++|.+|..+ |++++|+.+|+++++.
T Consensus 130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999999999 9999999999999886
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.39 E-value=1.2e-12 Score=161.45 Aligned_cols=173 Identities=16% Similarity=0.067 Sum_probs=145.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~l 205 (1124)
...+..++.+|..++.+|++++|+..|++++++ ++....+|+++|.+|..+|++++|+..|++|+.+
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----- 496 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT----- 496 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 444667889999999999999999999999987 4566789999999999999999999999999998
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 206 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.|+...+++++|.+|..+|++++ +++|++|+++ .|....+++++|.+|..+|++++|+.+|++|+++.
T Consensus 497 ---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 564 (681)
T 2pzi_A 497 ---FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTS 564 (681)
T ss_dssp ---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS
T ss_pred ---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC
Confidence 35557789999999999999999 9999999986 45557789999999999999999999999998753
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHhc
Q 001206 286 QRLLGPDHIQTAASYHAIAIALSLMEAYPLS-VQHEQTTLQILRAKL 331 (1124)
Q Consensus 286 ~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeA-le~lekALei~~k~l 331 (1124)
+....+++++|.+|...++.++| ...+++|++.+....
T Consensus 565 --------P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 565 --------RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp --------TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred --------cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 55678899999999888876666 677888887776553
No 103
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.37 E-value=4.8e-12 Score=122.49 Aligned_cols=118 Identities=18% Similarity=0.186 Sum_probs=103.0
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 166 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 166 d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
.+|..+.++.++|..|+..|+|++|+.+|++|+.+ .|....++.++|.+|..+|++++|+.+|++++++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 76 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--- 76 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence 37889999999999999999999999999999987 4556789999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 001206 246 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 307 (1124)
Q Consensus 246 ~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly 307 (1124)
.|....+++++|.+|..+|++++|+.+|++++++. +++ ..++..|+.++
T Consensus 77 -----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-----P~~---~~a~~~l~~~l 125 (126)
T 4gco_A 77 -----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD-----PSN---EEAREGVRNCL 125 (126)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHC
T ss_pred -----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----cCC---HHHHHHHHHhc
Confidence 35557889999999999999999999999999874 333 45666666553
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.37 E-value=2.3e-12 Score=130.34 Aligned_cols=165 Identities=17% Similarity=0.072 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 210 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p 210 (1124)
.++.+|..++..|++++|+.+|++++.+ +|....++..+|.+|..+|++++|+.+|++++.+. + ++
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-----p-~~ 73 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY-----Q-DN 73 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-----C-CH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-----C-Ch
Confidence 4678899999999999999999999987 56778899999999999999999999999987652 2 33
Q ss_pred hHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 001206 211 DTMKSYGDLAVFY-YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 289 (1124)
Q Consensus 211 ~~a~ay~nLA~iy-~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~l 289 (1124)
. .+..++.+. ...++..+|+.+|++++++ .|....+++++|.+|..+|++++|+.+|++++++.
T Consensus 74 ~---~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---- 138 (176)
T 2r5s_A 74 S---YKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKVN---- 138 (176)
T ss_dssp H---HHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred H---HHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----
Confidence 2 233334332 2334445689999999985 45557889999999999999999999999998753
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 290 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 290 G~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
++. ....++..+|.+|..+|++++|+.+|++++..
T Consensus 139 -p~~-~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 139 -LGA-QDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp -TTT-TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred -ccc-ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 211 12457889999999999999999999998754
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.37 E-value=9.6e-12 Score=120.38 Aligned_cols=118 Identities=16% Similarity=0.114 Sum_probs=103.9
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001206 124 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 203 (1124)
Q Consensus 124 ~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er 203 (1124)
.....+..+..+|..++.+|+|++|+.+|++++.+ +|....+|.++|.+|..+|++++|+..|++++.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 76 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--- 76 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence 45667889999999999999999999999999987 5677889999999999999999999999999987
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 001206 204 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 265 (1124)
Q Consensus 204 ~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy 265 (1124)
+|....+|.++|.+|..+|++++|+++|++++++ .|....++.+|+.++
T Consensus 77 -----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 -----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL 125 (126)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred -----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence 4556789999999999999999999999999986 344456677777653
No 106
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=2.1e-11 Score=134.50 Aligned_cols=199 Identities=17% Similarity=0.098 Sum_probs=154.4
Q ss_pred HcCCH-------HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001206 141 DKGKL-------EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 213 (1124)
Q Consensus 141 ~qGdy-------eeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a 213 (1124)
..|++ ++|+..|++|+..+ .|....+|..+|.++..+|++++|...|++++.+ .++++.
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~~-------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~-- 134 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAISTL-------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT-- 134 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTTT-------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--
T ss_pred hccchhhcccchHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCcc--
Confidence 46885 89999999998721 4566789999999999999999999999999985 233322
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 214 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCNQRLLGPD 292 (1124)
Q Consensus 214 ~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~-lGdyeeAle~lekALei~~k~lG~d 292 (1124)
.++.++|.++.+.|++++|+.+|++|+++ .+. ...++...|.+... .|++++|+.+|+++++.. +
T Consensus 135 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~p~---~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-----p- 200 (308)
T 2ond_A 135 LVYIQYMKFARRAEGIKSGRMIFKKARED-----ART---RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----G- 200 (308)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----TTC---CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----T-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-
Confidence 27899999999999999999999999874 122 24455555655443 799999999999999986 2
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhh
Q 001206 293 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIAS 372 (1124)
Q Consensus 293 ~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~ 372 (1124)
.....+..+|.++..+|++++|+.+|++++... .+.++
T Consensus 201 --~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--~l~p~-------------------------------------- 238 (308)
T 2ond_A 201 --DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--SLPPE-------------------------------------- 238 (308)
T ss_dssp --TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--SSCGG--------------------------------------
T ss_pred --CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--CCCHH--------------------------------------
Confidence 235778899999999999999999999887631 00110
Q ss_pred cCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 373 KGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 373 k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
....++..++..+...|++++|...+++++++.+...
T Consensus 239 ----~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 239 ----KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp ----GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 0124566677777889999999999999999988643
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.35 E-value=1.7e-11 Score=128.62 Aligned_cols=164 Identities=14% Similarity=0.084 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHH
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG----DFNQATIYQQKALDINE 202 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lG----dydeAle~~~KALeI~e 202 (1124)
..+..++.+|.+|...+++++|+.+|+++++. ....++++||.+|.. + ++++|+.+|++|++.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-- 82 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-- 82 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--
Confidence 34678899999999999999999999999764 245789999999998 7 999999999999652
Q ss_pred HhcCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHH
Q 001206 203 RELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVA 274 (1124)
Q Consensus 203 r~lg~D~p~~a~ay~nLA~iy~~----lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~----lGdyeeA 274 (1124)
....++++||.+|.. .+++++|+++|++|++. + .......++++||.+|.. .+++++|
T Consensus 83 --------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~-~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 83 --------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----S-ESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp --------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----T-TSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred --------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----C-CCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 236789999999998 89999999999999863 1 111457889999999999 8999999
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHH
Q 001206 275 LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM-E-----AYPLSVQHEQTTLQI 326 (1124)
Q Consensus 275 le~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~l-G-----d~eeAle~lekALei 326 (1124)
+.+|++|++.. .+ ..++++||.+|... | ++++|+.+|+++.+.
T Consensus 149 ~~~~~~A~~~~------~~---~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 149 SEYFKGSSSLS------RT---GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHTS------CT---THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC------CC---HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 99999998651 12 24688999999865 3 899999999999875
No 108
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.34 E-value=1.6e-12 Score=146.71 Aligned_cols=162 Identities=16% Similarity=0.127 Sum_probs=131.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-------CChhHHH
Q 001206 142 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL-------DHPDTMK 214 (1124)
Q Consensus 142 qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~-------D~p~~a~ 214 (1124)
.+++++|+.+|++++.. .+..+.++.++|.+|+.+|+|++|+.+|++|+.+....... ..+....
T Consensus 126 L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE--------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 197 (336)
T ss_dssp EEEEECCCCGGGCCHHH--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 45677788788777765 45678899999999999999999999999999984221000 0122368
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 001206 215 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 294 (1124)
Q Consensus 215 ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p 294 (1124)
++.++|.+|..+|+|++|+.+|++++++ .|....+++++|.+|..+|++++|+.+|++|+++. +
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P--- 261 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-----P--- 261 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----S---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----C---
Confidence 9999999999999999999999999986 34557889999999999999999999999999874 3
Q ss_pred HHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHH
Q 001206 295 QTAASYHAIAIALSLMEAYPLS-VQHEQTTLQIL 327 (1124)
Q Consensus 295 ~~A~a~~nLA~ly~~lGd~eeA-le~lekALei~ 327 (1124)
....++..||.++..+|++++| ...|++.+..+
T Consensus 262 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3356889999999999999999 45677666544
No 109
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.33 E-value=3.4e-11 Score=116.35 Aligned_cols=109 Identities=17% Similarity=0.252 Sum_probs=97.3
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 168 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 247 (1124)
Q Consensus 168 p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~ 247 (1124)
.+.+.++.+||.+++.+|+|++|+.+|++|+.+ +|....+|.++|.+|..+|+|++|+++|++++++....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~- 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET- 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence 356788999999999999999999999999987 45667899999999999999999999999999987653
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 248 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 248 G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
...+...+.++.++|.+|..+|++++|+++|+++|...
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 33456678899999999999999999999999999863
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.32 E-value=2.5e-11 Score=127.30 Aligned_cols=177 Identities=12% Similarity=0.027 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 001206 147 DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL 226 (1124)
Q Consensus 147 eAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~l 226 (1124)
+|+.+|+++.+. ..+.+++.||.+|...+++++|+.+|+++++. . ...++++||.+|..
T Consensus 4 eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------g---~~~a~~~lg~~y~~- 62 (212)
T 3rjv_A 4 EPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-------G---DGDALALLAQLKIR- 62 (212)
T ss_dssp CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHTTS-
T ss_pred hHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------C---CHHHHHHHHHHHHc-
Confidence 577888888754 34678999999999999999999999999763 1 35789999999998
Q ss_pred C----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 001206 227 Q----HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKCNQRLLGPDHIQTAA 298 (1124)
Q Consensus 227 G----dyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~----lGdyeeAle~lekALei~~k~lG~d~p~~A~ 298 (1124)
+ ++++|+++|++|.+. . ...++++||.+|.. .+++++|+.+|++|++.- +......
T Consensus 63 ~g~~~~~~~A~~~~~~A~~~-------g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~~~~~ 126 (212)
T 3rjv_A 63 NPQQADYPQARQLAEKAVEA-------G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS------ESDAAVD 126 (212)
T ss_dssp STTSCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST------TSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC------CCcchHH
Confidence 7 999999999999652 2 35688999999998 899999999999998642 1113478
Q ss_pred HHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcC
Q 001206 299 SYHAIAIALSL----MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKG 374 (1124)
Q Consensus 299 a~~nLA~ly~~----lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~ 374 (1124)
++++||.+|.. .+++++|+.+|+++.++ ..++
T Consensus 127 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~-------------------------------------- 162 (212)
T 3rjv_A 127 AQMLLGLIYASGVHGPEDDVKASEYFKGSSSL------SRTG-------------------------------------- 162 (212)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT------SCTT--------------------------------------
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc------CCCH--------------------------------------
Confidence 89999999999 88999999999988753 1110
Q ss_pred CCcHHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHHH
Q 001206 375 HLSVSDLLDYINPSHDTK-G-----RNVSTLKRKTYVAKVK 409 (1124)
Q Consensus 375 ~~~vaell~~Lg~~y~~q-G-----dyeeAl~~yekALkL~ 409 (1124)
..+..||.+|... | ++++|+.+|+++++.-
T Consensus 163 -----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 163 -----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp -----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 2355677777643 3 8999999999998763
No 111
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.32 E-value=4.8e-11 Score=110.62 Aligned_cols=132 Identities=27% Similarity=0.464 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 209 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~ 209 (1124)
..++.+|..+...|++++|+.+|++++.. .+....++..+|.++...|++++|+.++++++.+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------- 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------- 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------
Confidence 45678899999999999999999999876 34456789999999999999999999999998762
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 210 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
+....++.++|.++...|++++|+.+|++++.+ .+....++..+|.+|...|++++|+.+|++++.+.
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 334567899999999999999999999999875 23335678899999999999999999999998753
No 112
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.31 E-value=5.5e-11 Score=114.87 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 001206 210 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 289 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~l 289 (1124)
.+.+.++.+||.+++.+|+|++|+.+|++|+++ +|....+++++|.+|..+|+|++|+.+|++++++....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~- 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET- 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence 456788999999999999999999999999986 45567889999999999999999999999999997554
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 290 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 290 G~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
...+...+.+|.++|.+|..+|++++|+.+|++++.+
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455667889999999999999999999999999875
No 113
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.31 E-value=3.6e-11 Score=111.48 Aligned_cols=131 Identities=27% Similarity=0.455 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 172 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 251 (1124)
Q Consensus 172 ~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dh 251 (1124)
.+++.+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.+|++++.. .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~ 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence 46889999999999999999999999876 2334678899999999999999999999999875 2
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 252 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 252 p~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
+....++.++|.++...|++++|+.+|++++... +. ...++..+|.+|...|++++|+.++++++.+
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC---ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 3335678899999999999999999999998864 22 2467888999999999999999999998875
No 114
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.30 E-value=7e-11 Score=115.35 Aligned_cols=139 Identities=13% Similarity=0.078 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
..+..++.+|..++..|++++|+.+|.+++.+ .+....++.++|.++..+|++++|+.++++++.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 35778999999999999999999999999987 4556789999999999999999999999999987
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
.+....++.++|.+|..+|++++|+.+|++++.+. +.+.. +..+..++..+..+|++++|+.++.++..+..
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDKD-AKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 34457789999999999999999999999999862 22322 33345566668899999999999999988875
Q ss_pred H
Q 001206 287 R 287 (1124)
Q Consensus 287 k 287 (1124)
.
T Consensus 149 ~ 149 (166)
T 1a17_A 149 S 149 (166)
T ss_dssp H
T ss_pred c
Confidence 4
No 115
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.29 E-value=1.1e-10 Score=114.06 Aligned_cols=139 Identities=19% Similarity=0.266 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 169 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 248 (1124)
Q Consensus 169 ~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G 248 (1124)
..+..+..+|.+++..|++++|+.+|++++.+ .+....++.++|.++..+|++++|+.+|++++.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 45678999999999999999999999999987 2445778999999999999999999999999986
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 001206 249 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 328 (1124)
Q Consensus 249 ~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~ 328 (1124)
.+....+++++|.+|..+|++++|+.+|++++.+. +.+. .+..+..++..+..+|++++|+.+++++..++.
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 24446789999999999999999999999999874 3333 233445666668899999999999999888775
Q ss_pred H
Q 001206 329 A 329 (1124)
Q Consensus 329 k 329 (1124)
.
T Consensus 149 ~ 149 (166)
T 1a17_A 149 S 149 (166)
T ss_dssp H
T ss_pred c
Confidence 4
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.28 E-value=3.5e-11 Score=123.49 Aligned_cols=140 Identities=16% Similarity=0.097 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
..+..++.+|..++..|++++|+.+|++++. + ...++.++|.+|..+|++++|+.+|++++.+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~----------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------ 66 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQD----------P-HSRICFNIGCMYTILKNMTEAEKAFTRSINR------ 66 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS----------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC----------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 3466788999999999999999999998841 1 3579999999999999999999999999987
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC--------GPSHPNTAATYINVAMMEEGLGNVHVALRYL 278 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~--------G~dhp~~a~al~nLA~iy~~lGdyeeAle~l 278 (1124)
.+....+++++|.+|..+|++++|+.+|++++.+..... ....+....+++++|.+|..+|++++|+.+|
T Consensus 67 --~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (213)
T 1hh8_A 67 --DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 144 (213)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 345578899999999999999999999999998632100 0023456789999999999999999999999
Q ss_pred HHHHHHH
Q 001206 279 HKALKCN 285 (1124)
Q Consensus 279 ekALei~ 285 (1124)
++++++.
T Consensus 145 ~~al~~~ 151 (213)
T 1hh8_A 145 ALATSMK 151 (213)
T ss_dssp HHHHTTC
T ss_pred HHHHHcC
Confidence 9999864
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.27 E-value=9.8e-12 Score=125.16 Aligned_cols=104 Identities=13% Similarity=0.039 Sum_probs=94.9
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 166 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 166 d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
.+|....+++.+|.+++.+|+|++|+.+|++++.+ .|....++.+||.+|..+|+|++|+.+|++++.+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--- 99 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--- 99 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---
Confidence 36888899999999999999999999999999987 4666788999999999999999999999999997
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 246 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 246 ~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.|....+++++|.+|..+|++++|+.+|++++++.
T Consensus 100 -----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 100 -----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp -----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34445789999999999999999999999999975
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.25 E-value=3.9e-11 Score=123.07 Aligned_cols=137 Identities=15% Similarity=0.054 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 171 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 250 (1124)
Q Consensus 171 A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~d 250 (1124)
+..++.+|.++...|++++|+.+|++++. . ...++.++|.+|..+|++++|+.+|++++.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 66 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR-------- 66 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 45688999999999999999999998841 1 3568999999999999999999999999986
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001206 251 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL--------GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 322 (1124)
Q Consensus 251 hp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~l--------G~d~p~~A~a~~nLA~ly~~lGd~eeAle~lek 322 (1124)
.+....+++++|.+|..+|++++|+.+|++++++..... ....+....+++++|.+|..+|++++|+.+|++
T Consensus 67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 344568899999999999999999999999998652210 002345678899999999999999999999999
Q ss_pred HHHH
Q 001206 323 TLQI 326 (1124)
Q Consensus 323 ALei 326 (1124)
++++
T Consensus 147 al~~ 150 (213)
T 1hh8_A 147 ATSM 150 (213)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 9876
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.25 E-value=1.3e-11 Score=124.22 Aligned_cols=102 Identities=11% Similarity=-0.014 Sum_probs=93.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
+|+...+++++|.+++.+|++++|+.+|++++.+ .|....+++++|.+|..+|+|++|+.+|++|+.+.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--- 100 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--- 100 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---
Confidence 6888999999999999999999999999999986 45667889999999999999999999999999985
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
++ ...+++++|.+|..+|++++|+.+|++++++
T Consensus 101 --P~---~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 101 --KN---DYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp --SS---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33 3468999999999999999999999999987
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.24 E-value=4.9e-11 Score=118.44 Aligned_cols=112 Identities=13% Similarity=-0.010 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCH
Q 001206 150 TYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 229 (1124)
Q Consensus 150 ~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdy 229 (1124)
..|++++.+ ++....+++.+|.+++..|++++|+.+|++++.+ .|....+++++|.+|..+|++
T Consensus 8 ~~~~~al~~--------~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~ 71 (148)
T 2vgx_A 8 GTIAMLNEI--------SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQY 71 (148)
T ss_dssp CSHHHHTTC--------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHcC--------CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhH
Confidence 345565543 6778889999999999999999999999999987 355577889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 230 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 230 eeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
++|+.+|++++.+ .|....+++++|.+|..+|++++|+.+|++++++.
T Consensus 72 ~~A~~~~~~al~l--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 72 DLAIHSYSYGAVM--------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999986 24445778999999999999999999999999987
No 121
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=1e-10 Score=129.02 Aligned_cols=185 Identities=13% Similarity=0.029 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHHHHHhcCCCChh
Q 001206 146 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-------TGDF-------NQATIYQQKALDINERELGLDHPD 211 (1124)
Q Consensus 146 eeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~-------lGdy-------deAle~~~KALeI~er~lg~D~p~ 211 (1124)
++|+..|++++.+ +|....+|+.+|.++.. .|++ ++|+..|++|+... .|+
T Consensus 33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-------~p~ 97 (308)
T 2ond_A 33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-------LKK 97 (308)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-------TTT
T ss_pred HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-------Ccc
Confidence 6888999999987 45667889999988864 5886 88888888888721 355
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 212 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 291 (1124)
Q Consensus 212 ~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~ 291 (1124)
...++.++|.++..+|++++|..+|++++.+ .+.++. .++.++|.++..+|++++|+.+|++|++.. +
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----p 165 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKAREDA-----R 165 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTST-----T
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----C
Confidence 6778999999999999999999999999974 222222 278999999999999999999999998753 2
Q ss_pred CcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhh
Q 001206 292 DHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASI 370 (1124)
Q Consensus 292 d~p~~A~a~~nLA~ly~~-lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~ 370 (1124)
.. ..++...+.+... +|++++|+..|++++++. +++
T Consensus 166 ~~---~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-----p~~----------------------------------- 202 (308)
T 2ond_A 166 TR---HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----GDI----------------------------------- 202 (308)
T ss_dssp CC---THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----TTC-----------------------------------
T ss_pred CC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc-----------------------------------
Confidence 22 3445555555433 799999999999998763 222
Q ss_pred hhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 371 ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 408 (1124)
Q Consensus 371 a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL 408 (1124)
..++..++..+..+|++++|+..|+++++.
T Consensus 203 --------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 203 --------PEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp --------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred --------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 134566677778899999999999999874
No 122
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.24 E-value=1e-10 Score=131.91 Aligned_cols=145 Identities=16% Similarity=0.119 Sum_probs=120.5
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001206 125 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP-------YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 197 (1124)
Q Consensus 125 ~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~-------d~p~~A~ay~nLG~ly~~lGdydeAle~~~KA 197 (1124)
....+..++.+|..++.+|+|++|+.+|++++.+....... ..+..+.+|.+||.+|..+|+|++|+.+|+++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34567889999999999999999999999999884211000 01123689999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH-HH
Q 001206 198 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA-LR 276 (1124)
Q Consensus 198 LeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeA-le 276 (1124)
+.+ .|....+++++|.+|..+|++++|+.+|++++++ .|....++.+||.++..+|++++| ..
T Consensus 223 l~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~ 286 (336)
T 1p5q_A 223 LEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLAREKK 286 (336)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 997 3556789999999999999999999999999986 344467899999999999999999 56
Q ss_pred HHHHHHHHH
Q 001206 277 YLHKALKCN 285 (1124)
Q Consensus 277 ~lekALei~ 285 (1124)
+|++++...
T Consensus 287 ~~~~~~~~~ 295 (336)
T 1p5q_A 287 LYANMFERL 295 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777654
No 123
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.24 E-value=6.1e-11 Score=130.31 Aligned_cols=171 Identities=11% Similarity=-0.033 Sum_probs=143.6
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 168 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 247 (1124)
Q Consensus 168 p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~ 247 (1124)
+.....+..+|..+...|++++|+..|++++.+ .|+...++.+||.+|..+|++++|+.+|++++..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~----- 180 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ----- 180 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----
Confidence 455678899999999999999999999999987 3556788999999999999999999999998764
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 248 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 248 G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
.|........++..+..+++.++|+..|++++... |....++++||.+|..+|++++|+..|+++++.
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~- 248 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN--------PEDAALATQLALQLHQVGRNEEALELLFGHLRX- 248 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC--------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-
Confidence 23445566777888889999999999999999874 445678999999999999999999999999875
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 328 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 407 (1124)
Q Consensus 328 ~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALk 407 (1124)
.+++ ....++..++.++...|+.++|...|++++.
T Consensus 249 ----~p~~-----------------------------------------~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 ----DLTA-----------------------------------------ADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp ----CTTG-----------------------------------------GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ----cccc-----------------------------------------ccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 2221 0124577889999999999999999999886
Q ss_pred H
Q 001206 408 V 408 (1124)
Q Consensus 408 L 408 (1124)
.
T Consensus 284 ~ 284 (287)
T 3qou_A 284 A 284 (287)
T ss_dssp H
T ss_pred H
Confidence 5
No 124
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.23 E-value=5.3e-11 Score=142.56 Aligned_cols=156 Identities=13% Similarity=-0.003 Sum_probs=116.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001206 184 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 263 (1124)
Q Consensus 184 lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~ 263 (1124)
.|++++|+.+|++++.+ +|....++.++|.+|..+|++++|+++|++++++ .|....++.++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGR 65 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 47899999999999876 3455788999999999999999999999999984 4555788999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 001206 264 MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 343 (1124)
Q Consensus 264 iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~ 343 (1124)
+|..+|++++|+.+|++++++. +....+++++|.+|..+|++++|+.+|++++++ .+++.
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~------- 125 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDAA--------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL-----LPEEP------- 125 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------
Confidence 9999999999999999999874 334678999999999999999999999999876 23221
Q ss_pred HHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHHhh
Q 001206 344 WLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTK---GRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 344 ~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~q---GdyeeAl~~yekALkL~~s 411 (1124)
.++..++.++..+ |++++|+.+|++++++...
T Consensus 126 ------------------------------------~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 126 ------------------------------------YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp ------------------------------------HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred ------------------------------------HHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 3466777888888 8999999999998887664
No 125
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.22 E-value=2.6e-10 Score=107.98 Aligned_cols=123 Identities=17% Similarity=0.144 Sum_probs=102.0
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 169 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 248 (1124)
Q Consensus 169 ~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G 248 (1124)
..+..+..+|..++..|+|++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 67 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------ 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 45678999999999999999999999999987 3555789999999999999999999999999986
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 001206 249 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL 309 (1124)
Q Consensus 249 ~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~ 309 (1124)
.|....+++++|.+|..+|++++|+.+|++++++..... +.+....++..|+.+...
T Consensus 68 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 68 --DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHHh
Confidence 344578899999999999999999999999999874432 223344555556655543
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.21 E-value=4.6e-10 Score=106.31 Aligned_cols=123 Identities=16% Similarity=0.064 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
..+..++.+|..++..|+|++|+.+|++++.+ .+....+|.++|.+|..+|++++|+.+|++++.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 67 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------ 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 35778899999999999999999999999987 4566789999999999999999999999999987
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 267 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~ 267 (1124)
.|....++.++|.+|..+|++++|+.+|++++.+..... +.|....++..++.+...
T Consensus 68 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 68 --DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHHh
Confidence 355578899999999999999999999999999863322 234555666666666544
No 127
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.16 E-value=4.3e-11 Score=120.97 Aligned_cols=166 Identities=11% Similarity=-0.020 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 172 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 251 (1124)
Q Consensus 172 ~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dh 251 (1124)
..+..+|..+...|++++|+.+|++++.+. |+...++.++|.+|...|++++|+.+|++++.+ .+ +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p-~ 72 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL--------QSRGDVKLAKADCLLETKQFELAQELLATIPLE-----YQ-D 72 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----GC-C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----cC-C
Confidence 457889999999999999999999999873 666889999999999999999999999998764 12 2
Q ss_pred hhHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 001206 252 PNTAATYINVAMME-EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 330 (1124)
Q Consensus 252 p~~a~al~nLA~iy-~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~ 330 (1124)
+. .+..++.+. ...++..+|+.+|++++++. |....+++.+|.+|..+|++++|+.+|++++++
T Consensus 73 ~~---~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---- 137 (176)
T 2r5s_A 73 NS---YKSLIAKLELHQQAAESPELKRLEQELAAN--------PDNFELACELAVQYNQVGRDEEALELLWNILKV---- 137 (176)
T ss_dssp HH---HHHHHHHHHHHHHHTSCHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----
T ss_pred hH---HHHHHHHHHHHhhcccchHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh----
Confidence 32 223334332 23334456899999998864 334578899999999999999999999988764
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 331 LGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 408 (1124)
Q Consensus 331 lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL 408 (1124)
.+++ ....++..++.++..+|++++|+.+|++++..
T Consensus 138 -~p~~-----------------------------------------~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 138 -NLGA-----------------------------------------QDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp -CTTT-----------------------------------------TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred -Cccc-----------------------------------------ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 1211 00135678899999999999999999998754
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.16 E-value=2.4e-10 Score=107.05 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=105.9
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 166 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 166 d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
..+....++..+|.++...|++++|+.+|++++.+ .+....++.++|.+|..+|++++|+.+|++++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 79 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--- 79 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence 45677889999999999999999999999999875 3445778999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC
Q 001206 246 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEA 312 (1124)
Q Consensus 246 ~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd 312 (1124)
.+....+++++|.+|..+|++++|+.+|++++.+. +....++..++.++..+|+
T Consensus 80 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 -----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD--------SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------GGGTHHHHHHHHHHHHHTC
T ss_pred -----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHhcC
Confidence 23446789999999999999999999999999874 3345678888999887764
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.16 E-value=4.2e-10 Score=104.31 Aligned_cols=123 Identities=19% Similarity=0.249 Sum_probs=106.1
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
.+....++..+|.++...|++++|+.+|++++.+ .+....++.++|.++...|++++|+.+|++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---- 75 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---- 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc----
Confidence 4566789999999999999999999999999986 2444778999999999999999999999999985
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCCh
Q 001206 247 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAY 313 (1124)
Q Consensus 247 ~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~ 313 (1124)
.+....++.++|.+|..+|++++|+.+|++++.+. + ....++..+|.++..+|++
T Consensus 76 ----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p---~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 ----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-----P---DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----T---TCHHHHHHHHHHHHHHTTC
T ss_pred ----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----c---cchHHHHHHHHHHHHHhcC
Confidence 23346788999999999999999999999999874 2 2346788899999998876
No 130
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.16 E-value=2.2e-11 Score=143.23 Aligned_cols=153 Identities=18% Similarity=0.143 Sum_probs=123.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-------CChhHHH
Q 001206 142 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL-------DHPDTMK 214 (1124)
Q Consensus 142 qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~-------D~p~~a~ 214 (1124)
.++|++|+.+|.+++.. .+..+.++.++|.+|+.+|+|++|+.+|++|+.+....... ..+....
T Consensus 247 l~~~~~A~~~~~~~~~~--------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 318 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKE--------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318 (457)
T ss_dssp EEEEECCCCGGGSCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHH--------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence 44566777777777665 35678899999999999999999999999999985321000 0122368
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 001206 215 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 294 (1124)
Q Consensus 215 ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p 294 (1124)
+|+++|.+|..+|+|++|+.+|++|+.+ .|....+++++|.+|..+|+|++|+.+|++|+++. +
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--------P 382 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--------P 382 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------C
Confidence 9999999999999999999999999986 34557889999999999999999999999999864 4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHH
Q 001206 295 QTAASYHAIAIALSLMEAYPLSVQ 318 (1124)
Q Consensus 295 ~~A~a~~nLA~ly~~lGd~eeAle 318 (1124)
....++..|+.++..++++++|..
T Consensus 383 ~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 383 QNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788999999999999988865
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.15 E-value=7.2e-10 Score=102.71 Aligned_cols=122 Identities=24% Similarity=0.304 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~l 205 (1124)
...+..++.+|..++..|++++|+.+|++++.+ .+....++..+|.++..+|++++|+.++++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----- 75 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI----- 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----
Confidence 445778899999999999999999999999987 3455779999999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH
Q 001206 206 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV 271 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdy 271 (1124)
.+....++.++|.+|..+|++++|+.+|++++.+ .|....++..+|.++..+|++
T Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 ---DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred ---CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence 2444678999999999999999999999999986 233456788999999988875
No 132
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.14 E-value=6.7e-10 Score=110.50 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=94.3
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 166 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 166 d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
..+..+..+..+|.+|+..|+|++|+.+|++++.+ .|....+++++|.+|..+|++++|+.+|++++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--- 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 35567889999999999999999999999999987 3455788999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 246 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 246 ~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.|....+++++|.+|..+|++++|+.+|++++++.
T Consensus 75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34557889999999999999999999999999986
No 133
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.14 E-value=1.3e-11 Score=146.25 Aligned_cols=178 Identities=12% Similarity=0.092 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..++.+|..++.+|+|++|+.+|++|+++ ++..+.+|.++|.+|..+|++++|+.+|++|+++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------- 69 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------- 69 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 3555667788889999999999999999987 5667889999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HHHCCCHHHHHHHHH------
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM--EEGLGNVHVALRYLH------ 279 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~i--y~~lGdyeeAle~le------ 279 (1124)
+|....+++++|.+|..+|++++|+++|++++++ +|....++.+++.+ +..+|++++|+++++
T Consensus 70 -~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~ 140 (477)
T 1wao_1 70 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 140 (477)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTT
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhH
Confidence 4566789999999999999999999999999986 23333466777777 888999999999999
Q ss_pred -----HHHHHHHHhcCCCcHH---HHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHH
Q 001206 280 -----KALKCNQRLLGPDHIQ---TAASYHAIAIALSLMEAY--PLSVQHEQTTLQILRA 329 (1124)
Q Consensus 280 -----kALei~~k~lG~d~p~---~A~a~~nLA~ly~~lGd~--eeAle~lekALei~~k 329 (1124)
+++.+.....+..+.. +...+..+...+...+.+ ..+...+.++.+++..
T Consensus 141 ~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~ 200 (477)
T 1wao_1 141 DSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK 200 (477)
T ss_dssp TCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence 6666554444444443 233344444555554544 3455577778777764
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.13 E-value=5.1e-10 Score=104.78 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=105.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001206 125 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 204 (1124)
Q Consensus 125 ~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~ 204 (1124)
.......++.+|..++..|++++|+.+|++++.+ .+....++..+|.+|..+|++++|+.++++++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---- 79 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---- 79 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Confidence 3445788999999999999999999999999875 4555789999999999999999999999999987
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 001206 205 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 270 (1124)
Q Consensus 205 lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGd 270 (1124)
.+....++.++|.+|..+|++++|+.+|++++.+ .+....++..++.++..+|+
T Consensus 80 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 ----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred ----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 2445678999999999999999999999999986 34456778889999887764
No 135
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.13 E-value=5.1e-11 Score=122.32 Aligned_cols=154 Identities=12% Similarity=0.054 Sum_probs=115.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh------
Q 001206 138 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD------ 211 (1124)
Q Consensus 138 ~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~------ 211 (1124)
.....|+|+.|.+.+...... ....+..+..+|.+++..|+|++|+.+|++++.+.... .+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT--EEWDDQILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TTCCCHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccchhhHHHH
Confidence 344567777777777655433 23567789999999999999999999999999874221 11000
Q ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 212 ----TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 212 ----~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
...++.++|.+|..+|++++|+.+|++++.+ .+....+++++|.+|..+|++++|+.+|++++.+.
T Consensus 83 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 152 (198)
T 2fbn_A 83 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-- 152 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--
Confidence 1478999999999999999999999999986 34456789999999999999999999999999874
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHH
Q 001206 288 LLGPDHIQTAASYHAIAIALSLMEAYPLSV 317 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~~lGd~eeAl 317 (1124)
+....++..++.++..++++.++.
T Consensus 153 ------p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 153 ------PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred ------CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 233567888999999888887776
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.13 E-value=3e-10 Score=126.08 Aligned_cols=214 Identities=11% Similarity=0.026 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHHH
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLL-------AVVLYHTGDFNQATIYQQKALDIN 201 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nL-------G~ly~~lGdydeAle~~~KALeI~ 201 (1124)
.+.+|..|.-+ ..+++..|+.+|.+++.+ +|..+.+|..+ +.++..++++.+++..+++++.+.
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~ 77 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS 77 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45667777776 589999999999999988 78999999999 899999999999999999988864
Q ss_pred HHhcCCCCh-------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 001206 202 ERELGLDHP-------------DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 268 (1124)
Q Consensus 202 er~lg~D~p-------------~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~l 268 (1124)
-..++.... ..-.++..+|.++...|+|++|.+.|..++. ..|... .++.+|.++...
T Consensus 78 p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------~~p~~~-~~~~~a~l~~~~ 148 (282)
T 4f3v_A 78 MSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------AGSEHL-VAWMKAVVYGAA 148 (282)
T ss_dssp GGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------TTCHHH-HHHHHHHHHHHT
T ss_pred hhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCchH-HHHHHHHHHHHc
Confidence 443322111 1234566789999999999999999988764 245555 889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 001206 269 GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 348 (1124)
Q Consensus 269 GdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l 348 (1124)
++|++|+.+|++++.. .+......+++.||.++..+|++++|+.+|++++. ++..+.
T Consensus 149 ~r~~dA~~~l~~a~~~------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~----------- 205 (282)
T 4f3v_A 149 ERWTDVIDQVKSAGKW------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEA----------- 205 (282)
T ss_dssp TCHHHHHHHHTTGGGC------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTT-----------
T ss_pred CCHHHHHHHHHHhhcc------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCcc-----------
Confidence 9999999999866432 11122356899999999999999999999998752 221110
Q ss_pred HHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 349 ESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 349 ~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
...+.+..+|.++..+|+.++|...|++++...+.
T Consensus 206 ----------------------------~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 206 ----------------------------CARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp ----------------------------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred ----------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 13356778999999999999999999999987654
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.13 E-value=1.8e-10 Score=115.45 Aligned_cols=123 Identities=16% Similarity=0.227 Sum_probs=103.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001206 139 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 218 (1124)
Q Consensus 139 yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~n 218 (1124)
+...|++++|+.+|++++.. ++....++..+|.+|...|++++|+.+|++++.+. |....++.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence 35678999999999999987 45667899999999999999999999999999874 334668899
Q ss_pred HHHH-HHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 219 LAVF-YYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 219 LA~i-y~~lGdy--eeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
+|.+ |...|++ ++|+.+|++++.+ .|....+++++|.+|..+|++++|+.+|++++.+.
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999 8899999 9999999999986 34446788999999999999999999999999864
No 138
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.12 E-value=4.9e-09 Score=117.73 Aligned_cols=237 Identities=7% Similarity=0.006 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhc
Q 001206 129 GRQLLESSKTALDKGKL-EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdy-eeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lG--dydeAle~~~KALeI~er~l 205 (1124)
-+.++...+..+..|.+ ++|+.++.++|.+ +|....+++..+.++..++ ++++++.++.+++.+
T Consensus 32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~----- 98 (306)
T 3dra_A 32 YKQIMGLLLALMKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD----- 98 (306)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH-----
Confidence 34455555556666666 6899999999988 7788889999999999999 999999999999986
Q ss_pred CCCChhHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH--HHHH
Q 001206 206 GLDHPDTMKSYGDLAVFY----YRL---QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH--VALR 276 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy----~~l---GdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdye--eAle 276 (1124)
+|....+++..+.++ ... ++++++++++.+++++ +|....+++..+.++..+|+++ ++++
T Consensus 99 ---nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~EL~ 167 (306)
T 3dra_A 99 ---NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKELS 167 (306)
T ss_dssp ---CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ---CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHHHH
Confidence 455667888888888 677 8999999999999985 5666788999999999999999 9999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 001206 277 YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEA------YPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES 350 (1124)
Q Consensus 277 ~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd------~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~ 350 (1124)
++.++++.. +....+++..+.++..++. ++++++++++++.+ .+.+......+.++.....
T Consensus 168 ~~~~~i~~d--------~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~-----~p~n~SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 168 FVDKVIDTD--------LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK-----CPQNPSTWNYLLGIHERFD 234 (306)
T ss_dssp HHHHHHHHC--------TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH-----CSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhC--------CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh-----CCCCccHHHHHHHHHHhcC
Confidence 999999763 3445778888999988887 89999999998876 5777766655555543222
Q ss_pred HhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 351 KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 407 (1124)
Q Consensus 351 k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALk 407 (1124)
...+....+........ ...+.-..++..++.+|..+|++++|+++|+.+..
T Consensus 235 ~~~~~~~~~~~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 235 RSITQLEEFSLQFVDLE-----KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp CCGGGGHHHHHTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 21222222222111111 01123346788999999999999999999999775
No 139
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.11 E-value=4.8e-10 Score=111.29 Aligned_cols=129 Identities=12% Similarity=0.075 Sum_probs=104.1
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001206 168 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD----------HPDTMKSYGDLAVFYYRLQHTELALKYVK 237 (1124)
Q Consensus 168 p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D----------~p~~a~ay~nLA~iy~~lGdyeeAley~e 237 (1124)
...+..+..+|..++..|+|++|+.+|++|+.+.......+ .+....+|.++|.+|..+|+|++|+.+|+
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 35678899999999999999999999999999865542211 34567899999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 001206 238 RALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 311 (1124)
Q Consensus 238 kALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lG 311 (1124)
+++.+ .|....+++++|.+|..+|++++|+.+|++++.+. +++. ..+...|+.+...++
T Consensus 88 ~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-----p~~~--~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 88 EVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH-----PAAA--SVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----GGGH--HHHHHHHHHHHHHHH
T ss_pred HHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC-----CCCH--HHHHHHHHHHHHHHH
Confidence 99987 45567899999999999999999999999999984 2222 134445555554443
No 140
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.11 E-value=7e-10 Score=110.13 Aligned_cols=108 Identities=15% Similarity=0.063 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC----------CchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY----------HRMTAGAYSLLAVVLYHTGDFNQATIYQQK 196 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d----------~p~~A~ay~nLG~ly~~lGdydeAle~~~K 196 (1124)
..+..+...|..++..|+|++|+.+|.+++.++....... .+....+|.++|.+|..+|+|++|+.++++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4578899999999999999999999999999865542111 355678999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 197 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 197 ALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
++.+ .|....+|+++|.+|..+|++++|+.+|++++.+
T Consensus 89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 9998 4566889999999999999999999999999987
No 141
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.11 E-value=3.4e-10 Score=110.48 Aligned_cols=103 Identities=17% Similarity=0.061 Sum_probs=92.9
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
++....+++.+|.+++..|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++.+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 81 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---- 81 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 6777889999999999999999999999999986 3556778999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 247 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 247 ~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.|....+++++|.+|..+|++++|+.+|++++++.
T Consensus 82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 23445678999999999999999999999999987
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.10 E-value=2.2e-10 Score=125.66 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
+..++.+|..++..|+|++|+.+|++++.+ ++....+|.++|.+|..+|++++|+.+|++++.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------- 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 567889999999999999999999999987 5667789999999999999999999999999876
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
+|....+++++|.+|..+|++++|+.+|++++.+...
T Consensus 68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4556789999999999999999999999999997653
No 143
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.10 E-value=8.1e-10 Score=109.87 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=93.9
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001206 125 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 204 (1124)
Q Consensus 125 ~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~ 204 (1124)
....+..++.+|..++..|+|++|+.+|++++.+ .+....+|.++|.+|..+|++++|+.+|++++.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 74 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV---- 74 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence 4456888999999999999999999999999987 4566789999999999999999999999999998
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001206 205 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 243 (1124)
Q Consensus 205 lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ 243 (1124)
.|....+++++|.+|..+|++++|+.+|++++++.
T Consensus 75 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 75 ----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 35567899999999999999999999999999874
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.10 E-value=2.2e-09 Score=106.51 Aligned_cols=105 Identities=14% Similarity=-0.046 Sum_probs=94.0
Q ss_pred cCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001206 123 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 202 (1124)
Q Consensus 123 ~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~e 202 (1124)
.........++.+|..++..|+|++|+.+|++++.+ .|....+|++||.+|..+|++++|+.+|++++.+
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-- 84 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-- 84 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 345566888999999999999999999999999987 5667789999999999999999999999999987
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001206 203 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 243 (1124)
Q Consensus 203 r~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ 243 (1124)
.|+...+++++|.+|..+|++++|+.+|++++++.
T Consensus 85 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 ------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp ------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 24456789999999999999999999999999874
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.09 E-value=6.3e-10 Score=114.16 Aligned_cols=131 Identities=17% Similarity=0.144 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCc----------hhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR----------MTAGAYSLLAVVLYHTGDFNQATIYQQK 196 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p----------~~A~ay~nLG~ly~~lGdydeAle~~~K 196 (1124)
..+..++.+|..++..|+|++|+.+|.+++.+.... .+.. ....++.++|.+|..+|++++|+.++++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 113 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT--EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 113 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 347788999999999999999999999999864211 0000 1147899999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 001206 197 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVAL 275 (1124)
Q Consensus 197 ALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAl 275 (1124)
++.+ .+....+++++|.+|..+|++++|+.+|++++.+ .|....++.+++.++..++++.++.
T Consensus 114 al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 114 VLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 3455788999999999999999999999999986 3444677888999998888877766
No 146
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.07 E-value=1.4e-09 Score=127.52 Aligned_cols=222 Identities=11% Similarity=0.075 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhc
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG---DFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lG---dydeAle~~~KALeI~er~l 205 (1124)
....+.+|.+|...+.+++++........... ..++. ++++||.+|...| ++++|+.+|+++...
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----- 208 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAAL----NTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSR----- 208 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT----TTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH----cCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-----
Confidence 44678889999999977766665333332221 12333 8999999999999 999999999999875
Q ss_pred CCCChhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-H--HHCCCHHHHHHHH
Q 001206 206 GLDHPDTMKSYGDLAVFYYRL----QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM-E--EGLGNVHVALRYL 278 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~l----GdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~i-y--~~lGdyeeAle~l 278 (1124)
| +..+..+++||.+|... +++++|+.+|+++. +....++++||.+ | ...+++++|+.+|
T Consensus 209 g---~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 209 G---TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp T---CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 2 23456678999999766 79999999999986 1225678999998 4 5789999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--
Q 001206 279 HKALKCNQRLLGPDHIQTAASYHAIAIALSLME-----AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK-- 351 (1124)
Q Consensus 279 ekALei~~k~lG~d~p~~A~a~~nLA~ly~~lG-----d~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k-- 351 (1124)
+++.+. . ...++++||.+|. .| ++++|+.+|+++. ..++. +...|+.+...
T Consensus 275 ~~Aa~~-------g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--------~g~~~---A~~~Lg~~y~~G~ 332 (452)
T 3e4b_A 275 DNGRAA-------D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--------GREVA---ADYYLGQIYRRGY 332 (452)
T ss_dssp HHHHHT-------T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--------TTCHH---HHHHHHHHHHTTT
T ss_pred HHHHHC-------C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--------CCCHH---HHHHHHHHHHCCC
Confidence 998853 1 3578889999998 56 9999999999876 33443 34444443332
Q ss_pred ----hHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 001206 352 ----AFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT----KGRNVSTLKRKTYVAKV 408 (1124)
Q Consensus 352 ----~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~----qGdyeeAl~~yekALkL 408 (1124)
..+.+......... .+ ....+..||.+|.. ..++.+|+.||+++.+.
T Consensus 333 g~~~d~~~A~~~~~~Aa~-------~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 333 LGKVYPQKALDHLLTAAR-------NG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp TSSCCHHHHHHHHHHHHT-------TT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHh-------hC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 33333333322111 11 12467889999975 56999999999998753
No 147
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.07 E-value=7.6e-09 Score=133.41 Aligned_cols=223 Identities=16% Similarity=0.077 Sum_probs=152.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH------hcCC--------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001206 135 SSKTALDKGKLEDAVTYGTKALAKLVA------VCGP--------YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 200 (1124)
Q Consensus 135 lG~~yl~qGdyeeAl~~f~kAL~i~e~------i~G~--------d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI 200 (1124)
.|.++...|.|++|..+|+++...... ..+. .......+|+.+|.++...|++.+|+..|.+|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 388888888888888887775322111 1111 11234568999999999999999999999776
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------------cCC--------CChhHHHHHHH
Q 001206 201 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT------------CGP--------SHPNTAATYIN 260 (1124)
Q Consensus 201 ~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~------------~G~--------dhp~~a~al~n 260 (1124)
+....|.++|.++..+|+|++|+++|..|++..... .+. ..+.. ..+.+
T Consensus 1132 ----------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~-ad~~~ 1200 (1630)
T 1xi4_A 1132 ----------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNN-AHIQQ 1200 (1630)
T ss_pred ----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCH-HHHHH
Confidence 235678889999999999999999998877533110 000 01111 24557
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 001206 261 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQD 340 (1124)
Q Consensus 261 LA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~ 340 (1124)
+|..|...|+|++|+.+|.+| ..|..+|.+|.++|++++|++.+++|.. ..++.
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AIEaarKA~n----------~~aWk 1254 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANS----------TRTWK 1254 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHHHHHHHhCC----------HHHHH
Confidence 888899999999998888875 2567788999999999999998888732 22221
Q ss_pred HHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 001206 341 AAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 341 a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~ 410 (1124)
.. ..+.+..+.+..+...... .. ...+.+..++..|..+|.+++|+.++++++.+.+
T Consensus 1255 ev-~~acve~~Ef~LA~~cgl~---Ii---------v~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A 1255 EV-CFACVDGKEFRLAQMCGLH---IV---------VHADELEELINYYQDRGYFEELITMLEAALGLER 1311 (1630)
T ss_pred HH-HHHHhhhhHHHHHHHHHHh---hh---------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh
Confidence 11 1223334444444433221 10 1235567888999999999999999999987643
No 148
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.07 E-value=1.9e-10 Score=134.79 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHHH
Q 001206 257 TYINVAMMEEGLG---NVHVALRYLHKALKC 284 (1124)
Q Consensus 257 al~nLA~iy~~lG---dyeeAle~lekALei 284 (1124)
++++||.+|...| ++++|+.+|+++.+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~ 208 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSR 208 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC
Confidence 6788999999999 999999999988753
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.07 E-value=2.2e-09 Score=98.62 Aligned_cols=118 Identities=29% Similarity=0.472 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 170 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 249 (1124)
Q Consensus 170 ~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~ 249 (1124)
...++..+|.++...|++++|+.+|++++.. .+....++.++|.++...|++++|+.+|++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 72 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------- 72 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence 4678999999999999999999999999886 2334678899999999999999999999999875
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 001206 250 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 311 (1124)
Q Consensus 250 dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lG 311 (1124)
.+....++.++|.+|...|++++|+.+|++++.+. + ....++..+|.++..+|
T Consensus 73 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~---~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 -DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----P---NNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHHC
T ss_pred -CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----C---CcHHHHHHHHHHHHhcc
Confidence 23335678899999999999999999999998864 2 23456778888877654
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.07 E-value=1.7e-09 Score=102.79 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=93.4
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
.+..+..+..+|.+++..|+|++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++.+
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---- 72 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL---- 72 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----
Confidence 3456789999999999999999999999999987 3445778999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 247 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 247 ~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
.|....+++++|.+|..+|++++|+.+|++++.+...
T Consensus 73 ----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 ----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 3445678999999999999999999999999998754
No 151
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.06 E-value=2e-09 Score=109.80 Aligned_cols=117 Identities=19% Similarity=0.111 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCG----PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 203 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G----~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er 203 (1124)
.+..++..|..++..|+|++|+..|++||++.-.... ...+..+.+|.++|.++..+|+|++|+..|++||.++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 5788999999999999999999999999998532100 001124559999999999999999999999999999766
Q ss_pred hcCCCChhHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 204 ELGLDHPDTMKSY----GDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 204 ~lg~D~p~~a~ay----~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
. +.-.|+...+| +++|.++..+|++++|+.+|++|+++.-.
T Consensus 90 ~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 90 R-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp H-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred c-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 5 34567788888 99999999999999999999999998654
No 152
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.05 E-value=3.4e-09 Score=125.63 Aligned_cols=211 Identities=16% Similarity=0.055 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 001206 129 GRQLLESSKTALD-------KGKLE-------DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQ 194 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~-------qGdye-------eAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~ 194 (1124)
...++..|..+.. .|+++ +|+..|++|+.. ..|....++..+|.++...|++++|...|
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-------TCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-------hCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4566777777765 79987 777777777641 14566789999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHCCCHHH
Q 001206 195 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM-EEGLGNVHV 273 (1124)
Q Consensus 195 ~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~i-y~~lGdyee 273 (1124)
++++.+ .++++ ..++.++|.++.+.|++++|+.+|++|++. .+.....+...|.+ +...|++++
T Consensus 345 ~~al~~-----~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 345 NRLLAI-----EDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp HHHHHS-----SSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhCc-----cccCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhH
Confidence 999985 22222 358899999999999999999999999873 12223334444544 456999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhH
Q 001206 274 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAF 353 (1124)
Q Consensus 274 Ale~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~ 353 (1124)
|..+|+++++.. +++ ..++..++.++..+|++++|..+|++++.. .+.++.
T Consensus 410 A~~~~e~al~~~-----p~~---~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~-----~~~~~~---------------- 460 (530)
T 2ooe_A 410 AFKIFELGLKKY-----GDI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTS-----GSLPPE---------------- 460 (530)
T ss_dssp HHHHHHHHHHHH-----TTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHS-----CCSCGG----------------
T ss_pred HHHHHHHHHHHC-----CCC---HHHHHHHHHHHHhCCCHhhHHHHHHHHHhc-----cCCCHH----------------
Confidence 999999999876 333 467788999999999999999999998764 121111
Q ss_pred HHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 354 EQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 354 e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
....++..........|+.+.+...++++++..+.-.
T Consensus 461 -----------------------~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 461 -----------------------KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp -----------------------GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 1123454555556778999999999999999988543
No 153
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.05 E-value=1.9e-09 Score=109.94 Aligned_cols=118 Identities=18% Similarity=0.130 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---C-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 170 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL---D-HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 170 ~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~---D-~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
.+..+.++|..++..|+|++|+..|++||.+....... + .+....+|.|+|.++..+|+|++|+.+|++||+++..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 45678899999999999999999999999986321000 0 1224559999999999999999999999999998766
Q ss_pred hcCCCChhHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 246 TCGPSHPNTAATY----INVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 246 ~~G~dhp~~a~al----~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
. ++-.|+...+| +++|.++..+|++++|+.+|++|+++.-..
T Consensus 90 ~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 90 R-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp H-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred c-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 4 34567788888 999999999999999999999999997543
No 154
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.05 E-value=1e-09 Score=129.00 Aligned_cols=136 Identities=17% Similarity=0.129 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP-------YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 198 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~-------d~p~~A~ay~nLG~ly~~lGdydeAle~~~KAL 198 (1124)
...+..++.+|..++.+|+|++|+.+|++|+.+....... ..+..+.+|+++|.+|+.+|+|++|+.+|++|+
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4567889999999999999999999999999975321000 012337899999999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 001206 199 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 277 (1124)
Q Consensus 199 eI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~ 277 (1124)
.+ .|....+|+++|.+|..+|+|++|+.+|++|+++ .|....++.+|+.++..++++++|...
T Consensus 345 ~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 345 GL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 3556889999999999999999999999999985 455667899999999999999887643
No 155
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.03 E-value=5.8e-09 Score=95.70 Aligned_cols=117 Identities=27% Similarity=0.456 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
+..++.+|..+...|++++|+.+|.+++.. .+....++..+|.++...|++++|+.++++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------- 72 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------- 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence 567888999999999999999999999876 3445678999999999999999999999999886
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG 269 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lG 269 (1124)
.+....++.++|.+|...|++++|+.+|++++.+ .|....++.++|.++..+|
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 2334678899999999999999999999999885 2344567788888887654
No 156
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.03 E-value=5.5e-10 Score=111.93 Aligned_cols=122 Identities=14% Similarity=0.141 Sum_probs=101.2
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001206 181 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 260 (1124)
Q Consensus 181 y~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~n 260 (1124)
+...|++++|+.++++++.. .|....++..+|.+|...|++++|+.+|++++.+. |....++.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence 34578999999999999986 34456789999999999999999999999999863 223567899
Q ss_pred HHHH-HHHCCCH--HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 261 VAMM-EEGLGNV--HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 261 LA~i-y~~lGdy--eeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
+|.+ |...|++ ++|+.+|++++.+. +....+++.+|.+|..+|++++|+.+|++++++
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALALD--------SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999 8899999 99999999999874 233577889999999999999999999999876
No 157
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.03 E-value=3.7e-09 Score=98.15 Aligned_cols=108 Identities=17% Similarity=0.147 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 169 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 248 (1124)
Q Consensus 169 ~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G 248 (1124)
..+.++..+|.++...|++++|+.+|++++.+ .+....++.++|.+|...|++++|+.+|++++.+.... .
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 72 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-R 72 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-c
Confidence 35678999999999999999999999999987 24456789999999999999999999999999986542 2
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 249 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 249 ~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.++.....+++++|.+|..+|++++|+.+|++++.+.
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2344457889999999999999999999999999863
No 158
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.03 E-value=6.1e-09 Score=97.94 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 172 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 251 (1124)
Q Consensus 172 ~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dh 251 (1124)
.+++.+|.+++..|++++|+.+|++++.. .++++....+++.+|.+|..+|++++|+.+|++++.+ .+++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTH 72 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCC
Confidence 35788999999999999999999999886 3556656689999999999999999999999999985 3455
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 252 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 252 p~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
+....+++++|.+|..+|++++|+.+|++++...
T Consensus 73 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 73 DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5567889999999999999999999999999875
No 159
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.03 E-value=9.5e-10 Score=120.56 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 170 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 249 (1124)
Q Consensus 170 ~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~ 249 (1124)
.+..+..+|.+++..|+|++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 67 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------- 67 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 4678999999999999999999999999987 3455788999999999999999999999999974
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 250 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 250 dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
+|....+++++|.+|..+|++++|+.+|++++++...
T Consensus 68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4556788999999999999999999999999998743
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.01 E-value=3.8e-09 Score=102.98 Aligned_cols=105 Identities=16% Similarity=-0.040 Sum_probs=93.4
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001206 124 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 203 (1124)
Q Consensus 124 ~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er 203 (1124)
........++.+|..++..|+|++|+.+|++++.+ +|....+|..||.+|..+|++++|+.+|++++.+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 81 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--- 81 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence 34556778899999999999999999999999987 5667789999999999999999999999999997
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001206 204 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 244 (1124)
Q Consensus 204 ~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~e 244 (1124)
.|....+++++|.+|..+|++++|+.+|++++.+..
T Consensus 82 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 82 -----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp -----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 244566789999999999999999999999998753
No 161
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.01 E-value=7.4e-09 Score=97.36 Aligned_cols=119 Identities=13% Similarity=-0.007 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 001206 215 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 294 (1124)
Q Consensus 215 ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p 294 (1124)
+++++|.+++..|++++|+.+|++++.. .++++....+++.+|.+|..+|++++|+.+|++++... +++.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCc
Confidence 4678999999999999999999999885 34566667889999999999999999999999999864 4555
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 001206 295 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 348 (1124)
Q Consensus 295 ~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l 348 (1124)
....+++.+|.+|..+|++++|+.+|+++++. .++++....+...|..+
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ-----YPGSDAARVAQERLQSI 122 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHH
Confidence 56788999999999999999999999999886 36777666666655543
No 162
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.00 E-value=2.6e-09 Score=122.54 Aligned_cols=136 Identities=16% Similarity=0.102 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------CCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC--------GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 197 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~--------G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KA 197 (1124)
...+..++.+|..++.+|+|++|+.+|++++.+..... ...++....+|.+||.+|+.+|+|++|+.++++|
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34577899999999999999999999999999755420 0125677889999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 001206 198 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 277 (1124)
Q Consensus 198 LeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~ 277 (1124)
+.+ .|....+++++|.+|..+|++++|+.+|++|+++ .|....++..|+.++..++++++|.+.
T Consensus 300 l~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 300 LEI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 986 3556889999999999999999999999999986 233456778899999988888877643
No 163
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.00 E-value=2.3e-09 Score=123.02 Aligned_cols=134 Identities=15% Similarity=0.116 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001206 170 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL--------GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 241 (1124)
Q Consensus 170 ~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~l--------g~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALe 241 (1124)
.+..+..+|.+|+..|+|++|+.+|++|+.+..... ....+....+|.++|.+|..+|+|++|+.+|++|++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 356789999999999999999999999999765420 012466788999999999999999999999999998
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Q 001206 242 LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 319 (1124)
Q Consensus 242 i~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~ 319 (1124)
+ .|....+++++|.+|..+|++++|+.+|++|+++. ++ ...++..|+.++..++++++|...
T Consensus 302 ~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-----P~---~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 302 I--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-----PE---DKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp T--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred h--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 45567889999999999999999999999999874 22 346778889999988888877653
No 164
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.00 E-value=1.8e-08 Score=130.04 Aligned_cols=237 Identities=14% Similarity=0.090 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE-- 204 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~-- 204 (1124)
.....++.+|..+...|++++|+..|.+| .....|..+|.++...|+|++|+++|+.|.......
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~I 1169 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV 1169 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccc
Confidence 33567889999999999999999999775 234578899999999999999999998877443110
Q ss_pred ----------cCC--------CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 001206 205 ----------LGL--------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 266 (1124)
Q Consensus 205 ----------lg~--------D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~ 266 (1124)
.+. +.+.. ..+.++|..+...|+|++|..+|.+| ..|..+|.+|.
T Consensus 1170 dt~LafaYAKl~rleele~fI~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLv 1232 (1630)
T 1xi4_A 1170 ETELIFALAKTNRLAELEEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLV 1232 (1630)
T ss_pred cHHHHHHHHhhcCHHHHHHHHhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHH
Confidence 000 11111 34567999999999999999999885 35778999999
Q ss_pred HCCCHHHHHHHHHHHHHHHH--H---------------hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 001206 267 GLGNVHVALRYLHKALKCNQ--R---------------LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 329 (1124)
Q Consensus 267 ~lGdyeeAle~lekALei~~--k---------------~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k 329 (1124)
.+|++++|++++++|..... + ..|......+..+..++..|..+|.|++|+.++++++.+
T Consensus 1233 kLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--- 1309 (1630)
T 1xi4_A 1233 HLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--- 1309 (1630)
T ss_pred HhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---
Confidence 99999999999998865421 0 001111112334667888999999999999999988865
Q ss_pred hcCCCCHHHHHHHHHHH--HHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHH
Q 001206 330 KLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRK 402 (1124)
Q Consensus 330 ~lG~dh~~t~~a~~~La--~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~y 402 (1124)
.+.|.....-+..+. +--.+..+..+.+......+....+. ....+|..+.-+|..-|+++.|+...
T Consensus 1310 --eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~----e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1310 --ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAA----EQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred --ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHH----HHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 233333322222221 22222333333333222222111111 23467888888899999999998443
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.99 E-value=1.2e-08 Score=96.85 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..++.+|..++..|+|++|+.+|++++.+ .+....++.++|.+|..+|++++|+.++++++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------- 72 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------- 72 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 3677899999999999999999999999987 4566789999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
.|....+++++|.+|..+|++++|+.+|++++.+...
T Consensus 73 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 3456778999999999999999999999999998654
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.99 E-value=3.2e-11 Score=142.88 Aligned_cols=130 Identities=19% Similarity=0.282 Sum_probs=108.1
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 168 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 247 (1124)
Q Consensus 168 p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~ 247 (1124)
+..+.++..+|.+|..+|+|++|+.+|++|+++ +|....++.++|.+|..+|++++|+++|++|+++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----- 69 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL----- 69 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 345667888999999999999999999999997 4556889999999999999999999999999985
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--HHHcCChHHHHHHHH
Q 001206 248 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA--LSLMEAYPLSVQHEQ 321 (1124)
Q Consensus 248 G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~l--y~~lGd~eeAle~le 321 (1124)
+|....+++++|.+|..+|++++|+++|++|+++. +++ ..++..++.+ +..+|++++|+..++
T Consensus 70 ---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 70 ---DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHD---KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTC---TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45667889999999999999999999999999874 222 3456667777 888899999999988
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.99 E-value=7.3e-09 Score=96.10 Aligned_cols=106 Identities=18% Similarity=0.247 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..++.+|..++..|++++|+.+|.+++.+ .+....++..+|.+|..+|++++|+.++++++.+.... ..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 73 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE 73 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence 4677899999999999999999999999987 34557889999999999999999999999999987542 23
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
+......++.++|.+|..+|++++|+.+|++++.+
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33444789999999999999999999999999985
No 168
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.98 E-value=9.9e-09 Score=93.39 Aligned_cols=114 Identities=24% Similarity=0.230 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..++.+|..++..|++++|+.+|++++.+ .+....++..+|.+|..+|++++|+.++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------- 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-------
Confidence 3567889999999999999999999999987 3455779999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 265 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy 265 (1124)
.+....++.++|.+|..+|++++|+.+|++++.+ .|....++..++.+.
T Consensus 68 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 68 -KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME 116 (118)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence 2445678999999999999999999999999874 233345566666554
No 169
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.95 E-value=8.9e-09 Score=93.71 Aligned_cols=114 Identities=15% Similarity=0.134 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 170 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 249 (1124)
Q Consensus 170 ~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~ 249 (1124)
.+..+..+|.++...|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------- 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-------
Confidence 4568999999999999999999999999986 2344678999999999999999999999999986
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 001206 250 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 307 (1124)
Q Consensus 250 dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly 307 (1124)
.+....++.++|.+|..+|++++|+.+|++++++. +++ ...+..++.+.
T Consensus 68 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~l~~~~ 116 (118)
T 1elw_A 68 -KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE-----ANN---PQLKEGLQNME 116 (118)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----TTC---HHHHHHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-----CCC---HHHHHHHHHhh
Confidence 23446788999999999999999999999998753 232 34555556553
No 170
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.92 E-value=1.4e-09 Score=122.70 Aligned_cols=144 Identities=13% Similarity=0.041 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--CCC-------CchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC--GPY-------HRMTAGAYSLLAVVLYHTGDFNQATIYQQK 196 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~--G~d-------~p~~A~ay~nLG~ly~~lGdydeAle~~~K 196 (1124)
...+..++.+|..++..|+|++|+.+|++++.+..... ... ......+|++||.+|..+|+|++|+.+|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44678899999999999999999999999998732110 000 000114899999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHCCCHHHHH
Q 001206 197 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM-EEGLGNVHVAL 275 (1124)
Q Consensus 197 ALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~i-y~~lGdyeeAl 275 (1124)
++.+ +|....+++++|.+|..+|++++|+.+|++++++ .|....++.+|+.+ ....+..+++.
T Consensus 256 al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 256 VLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 3556789999999999999999999999999875 34445677788887 44556778888
Q ss_pred HHHHHHHHHH
Q 001206 276 RYLHKALKCN 285 (1124)
Q Consensus 276 e~lekALei~ 285 (1124)
.+|++++...
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8998888764
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=5.5e-09 Score=99.77 Aligned_cols=106 Identities=15% Similarity=0.126 Sum_probs=92.4
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
.+..+..+..+|.+++..|++++|+.+|++++.+ .++++....++.++|.+|..+|++++|+.+|++++.+
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---- 94 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---- 94 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 3566889999999999999999999999999875 2333445889999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 247 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 247 ~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.+....+++++|.+|..+|++++|+.+|++++.+.
T Consensus 95 ----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 95 ----DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp ----TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ----CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 23346788999999999999999999999999874
No 172
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.92 E-value=2.6e-08 Score=118.04 Aligned_cols=185 Identities=14% Similarity=0.025 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHHHHHhcCCCChh
Q 001206 146 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-------TGDFN-------QATIYQQKALDINERELGLDHPD 211 (1124)
Q Consensus 146 eeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~-------lGdyd-------eAle~~~KALeI~er~lg~D~p~ 211 (1124)
..|+.+|++++.. .|....+|..+|.++.. +|+++ +|+..|++|+. ...|+
T Consensus 255 ~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~-------~~~p~ 319 (530)
T 2ooe_A 255 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS-------TLLKK 319 (530)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT-------TTCSS
T ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH-------HhCcc
Confidence 4778889999887 34557889999999886 79988 66666666654 11355
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 212 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 291 (1124)
Q Consensus 212 ~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~ 291 (1124)
...++..+|.++...|++++|..+|++++.+ .+..+ ..++.++|.++..+|++++|+.+|++|++.. +
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-----~ 387 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKAREDA-----R 387 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----SSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-----T
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----cccCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-----C
Confidence 6788999999999999999999999999984 22222 3578899999999999999999999998742 2
Q ss_pred CcHHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhh
Q 001206 292 DHIQTAASYHAIAIA-LSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASI 370 (1124)
Q Consensus 292 d~p~~A~a~~nLA~l-y~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~ 370 (1124)
. ....+...+.+ +...|++++|..+|+++++.. ++++
T Consensus 388 ~---~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-----p~~~---------------------------------- 425 (530)
T 2ooe_A 388 T---RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----GDIP---------------------------------- 425 (530)
T ss_dssp C---CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-----TTCH----------------------------------
T ss_pred C---chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-----CCCH----------------------------------
Confidence 2 12334444444 446899999999999998763 3332
Q ss_pred hhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 371 ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 408 (1124)
Q Consensus 371 a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL 408 (1124)
.++..++.++...|++++|...|++++..
T Consensus 426 ---------~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 426 ---------EYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp ---------HHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred ---------HHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 23445556667789999999999999875
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.92 E-value=1.4e-09 Score=122.69 Aligned_cols=142 Identities=11% Similarity=0.023 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC-CCC--------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001206 169 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG-LDH--------PDTMKSYGDLAVFYYRLQHTELALKYVKRA 239 (1124)
Q Consensus 169 ~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg-~D~--------p~~a~ay~nLA~iy~~lGdyeeAley~ekA 239 (1124)
..+..+..+|.+++..|+|++|+.+|++|+.+...... ... .....+|+++|.+|..+|+|++|+.+|+++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34567889999999999999999999999987422100 000 001138899999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-HHcCChHHHHH
Q 001206 240 LYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL-SLMEAYPLSVQ 318 (1124)
Q Consensus 240 Lei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly-~~lGd~eeAle 318 (1124)
+.+ +|....+++++|.+|..+|++++|+.+|++++++. +....++..|+.+. ...+..++|..
T Consensus 257 l~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 257 LTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 986 34557889999999999999999999999998875 33456677788774 45566777888
Q ss_pred HHHHHHHH
Q 001206 319 HEQTTLQI 326 (1124)
Q Consensus 319 ~lekALei 326 (1124)
.|++++..
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 88877765
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.90 E-value=6.4e-09 Score=99.58 Aligned_cols=95 Identities=18% Similarity=0.097 Sum_probs=86.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001206 132 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 211 (1124)
Q Consensus 132 Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~ 211 (1124)
++.+|..++..|++++|+.+|++++.+ +|....+++.||.++..+|++++|+.+|++++.+ .|+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~ 83 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK 83 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence 577888999999999999999999987 6777889999999999999999999999999998 355
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 212 TMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 212 ~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
...++.+||.+|..+|++++|+.+|++++++
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 84 DIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999875
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1.2e-08 Score=97.31 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
..+..++.+|..++..|+|++|+.+|++++.+ .+++.....++.++|.+|..+|++++|+.++++++.+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------ 94 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK------ 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh------
Confidence 34778899999999999999999999999875 2333334889999999999999999999999999987
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
.+....+++++|.+|..+|++++|+.+|++++.+
T Consensus 95 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 95 --DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp --TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 2344778999999999999999999999999986
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.87 E-value=7.3e-09 Score=99.17 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 172 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 251 (1124)
Q Consensus 172 ~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dh 251 (1124)
..++.+|.++...|++++|+..|++++.+ .|....+++++|.++..+|++++|+.+|++++++ .
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~ 81 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------D 81 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 35788999999999999999999999987 4566889999999999999999999999999986 3
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 252 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 252 p~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
|....++++||.+|..+|++++|+.+|++++++.
T Consensus 82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4456788999999999999999999999998764
No 177
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.85 E-value=2e-09 Score=125.99 Aligned_cols=206 Identities=15% Similarity=0.131 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 209 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~ 209 (1124)
..+..+|..++..|++++|++.|.++- ....|..++..+...|+|++|+.+++.+++..
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~-------------D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~-------- 91 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKAD-------------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA-------- 91 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCC-------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------
Confidence 467788999999999999999997642 12378888889999999999999999887641
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 001206 210 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 289 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~l 289 (1124)
++ ..+...|+.+|.++|++.++.++++. |. ..++.++|..|...|+|++|..+|.++
T Consensus 92 ~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 92 RE-SYVETELIFALAKTNRLAELEEFING-------------PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp ------------------CHHHHTTTTTC-------------C-----------------CTTTHHHHHHHT--------
T ss_pred cc-chhHHHHHHHHHHhCCHHHHHHHHcC-------------Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 11 45677899999999999999887752 22 238999999999999999999999966
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchh
Q 001206 290 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 369 (1124)
Q Consensus 290 G~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~ 369 (1124)
..|..||.++..+|+|++|++.++++ .++.++.... .+....+.++.++.... .+.
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA----------~~~~~Wk~v~-~aCv~~~ef~lA~~~~l---~L~-- 204 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA----------NSTRTWKEVC-FACVDGKEFRLAQMCGL---HIV-- 204 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH----------TCHHHHHHHH-HHHHHTTCHHHHHHTTT---TTT--
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc----------CCchhHHHHH-HHHHHcCcHHHHHHHHH---HHH--
Confidence 24778999999999999999999988 2343332221 22334445555533222 111
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 001206 370 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 370 ~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~ 410 (1124)
.+ ++-+..+..+|.+.|++++|+.++++++.+.+
T Consensus 205 ----~~---ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ 238 (449)
T 1b89_A 205 ----VH---ADELEELINYYQDRGYFEELITMLEAALGLER 238 (449)
T ss_dssp ----TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT
T ss_pred ----hC---HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcH
Confidence 01 12244578889999999999999999986653
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.82 E-value=5.3e-09 Score=94.52 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 169 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 248 (1124)
Q Consensus 169 ~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G 248 (1124)
....++..+|.++...|++++|+.+|++++.+. +....++.++|.+|..+|++++|+.+|++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 69 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--------PEESKYWLMKGKALYNLERYEEAVDCYNYVINV------ 69 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------
Confidence 345678899999999999999999999999872 334678999999999999999999999999975
Q ss_pred CCChh--HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Q 001206 249 PSHPN--TAATYINVAMMEEGL-GNVHVALRYLHKALKC 284 (1124)
Q Consensus 249 ~dhp~--~a~al~nLA~iy~~l-GdyeeAle~lekALei 284 (1124)
.+. ...++.++|.+|..+ |++++|++++++++..
T Consensus 70 --~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 70 --IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp --SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred --CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 233 467899999999999 9999999999998764
No 179
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.80 E-value=2.1e-07 Score=106.31 Aligned_cols=235 Identities=11% Similarity=0.068 Sum_probs=169.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001206 137 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERELGLDHPDTMKS 215 (1124)
Q Consensus 137 ~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lG-dydeAle~~~KALeI~er~lg~D~p~~a~a 215 (1124)
.+....+..++|+.++.++|.+ +|....+++..+.++..+| ++++++.++.+++.+ +|....+
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--------nPKny~a 125 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--------NLKSYQV 125 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------TCCCHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCCcHHH
Confidence 3344445567899999999988 6778889999999999999 599999999999875 4667888
Q ss_pred HHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHHH
Q 001206 216 YGDLAVFYYRL-Q-HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH--------VALRYLHKALKCN 285 (1124)
Q Consensus 216 y~nLA~iy~~l-G-dyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdye--------eAle~lekALei~ 285 (1124)
++..+.++..+ + +++++++++.+++++ ++....+++..+.++...|.++ ++++++.++++..
T Consensus 126 W~hR~wlL~~l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d 197 (349)
T 3q7a_A 126 WHHRLLLLDRISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD 197 (349)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC
Confidence 99999999998 8 899999999998863 5666778888888888888887 8999998888753
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh------
Q 001206 286 QRLLGPDHIQTAASYHAIAIALSLMEA-------YPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA------ 352 (1124)
Q Consensus 286 ~k~lG~d~p~~A~a~~nLA~ly~~lGd-------~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~------ 352 (1124)
+....++++.+.++..+++ ++++++++++++.+ .+++......+.+|.......
T Consensus 198 --------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-----~P~n~SaW~Ylr~Ll~~~~~~~~~~~~ 264 (349)
T 3q7a_A 198 --------GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-----IPHNVSAWNYLRGFLKHFSLPLVPILP 264 (349)
T ss_dssp --------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCSGGGHH
T ss_pred --------CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCCCcccccc
Confidence 3445788889999998887 68888888888876 577776665555554321111
Q ss_pred -------------HHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 001206 353 -------------FEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 353 -------------~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~ 410 (1124)
........... ............-.-++.+|+.+|..+|+.++|++.|+....-.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~d 333 (349)
T 3q7a_A 265 AILPYTASKLNPDIETVEAFGFPM--PSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYD 333 (349)
T ss_dssp HHGGGTC--------------CCC--CC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccchhHHHHHHHH--HhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Confidence 01111111110 010000011133456889999999999999999999987654333
No 180
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.78 E-value=1.6e-08 Score=112.13 Aligned_cols=181 Identities=12% Similarity=-0.045 Sum_probs=138.5
Q ss_pred CChHHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCc-------------hhHHHHHHHHHHHHh
Q 001206 124 CSSADGRQLLES-------SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR-------------MTAGAYSLLAVVLYH 183 (1124)
Q Consensus 124 ~~s~~Ar~Ll~l-------G~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p-------------~~A~ay~nLG~ly~~ 183 (1124)
.....++.++.+ +.++...+++.+++..+++++.+.-..++.... ....+...+|.++..
T Consensus 35 ~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~ 114 (282)
T 4f3v_A 35 YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAA 114 (282)
T ss_dssp HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHH
T ss_pred hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHH
Confidence 344446666666 667777777788888888888753333222111 124567778999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHH
Q 001206 184 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN-TAATYINVA 262 (1124)
Q Consensus 184 lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~-~a~al~nLA 262 (1124)
.|+|++|.+.|..++.. .|... .++.+|.+++..++|++|+.+|++++.. .++. ...++++||
T Consensus 115 ~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~LG 178 (282)
T 4f3v_A 115 QGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW-------PDKFLAGAAGVAHG 178 (282)
T ss_dssp HTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC-------SCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc-------CCcccHHHHHHHHH
Confidence 99999999999877652 35555 8899999999999999999999866542 1333 356899999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 263 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ-TAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 263 ~iy~~lGdyeeAle~lekALei~~k~lG~d~p~-~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
.++..+|++++|+.+|++++. |...|. ...+++++|.++..+|+.++|..+|++++..
T Consensus 179 ~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 179 VAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999999873 232133 5678899999999999999999999999886
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.74 E-value=1.5e-08 Score=95.37 Aligned_cols=90 Identities=24% Similarity=0.221 Sum_probs=76.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 001206 183 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 262 (1124)
Q Consensus 183 ~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA 262 (1124)
.+|++++|+.+|++++.+ +.++|....++.+||.+|..+|++++|+.+|++++++ .|....+++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 468999999999999875 2335778899999999999999999999999999986 344477899999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHH
Q 001206 263 MMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 263 ~iy~~lGdyeeAle~lekALei~ 285 (1124)
.+|..+|++++|+.+|++++...
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999876
No 182
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.73 E-value=1.9e-08 Score=90.85 Aligned_cols=99 Identities=12% Similarity=0.061 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 209 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~ 209 (1124)
..++.+|..++..|++++|+.+|++++.+ .+....++.++|.+|..+|++++|+.++++++.+. ++
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~- 72 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-----ED- 72 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----CC-
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----cc-
Confidence 34567888999999999999999999987 34556789999999999999999999999999862 22
Q ss_pred hhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 001206 210 PDTMKSYGDLAVFYYRL-QHTELALKYVKRALYL 242 (1124)
Q Consensus 210 p~~a~ay~nLA~iy~~l-GdyeeAley~ekALei 242 (1124)
.....++.++|.+|..+ |++++|++++++++..
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 11567899999999999 9999999999998864
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.71 E-value=2e-08 Score=94.49 Aligned_cols=89 Identities=20% Similarity=0.207 Sum_probs=75.2
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 001206 141 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 220 (1124)
Q Consensus 141 ~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA 220 (1124)
.+|++++|+.+|++++.+ +..++....++.+||.+|..+|++++|+.+|++++.+ .|+...++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 368999999999999875 2235778899999999999999999999999999987 345578899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q 001206 221 VFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 221 ~iy~~lGdyeeAley~ekALei 242 (1124)
.+|..+|++++|+.+|++++.+
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999986
No 184
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.63 E-value=1.5e-06 Score=97.57 Aligned_cols=189 Identities=8% Similarity=0.008 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 210 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p 210 (1124)
.++.+|.++...|++++|++++.+++.. ++ ......++..++.+|..+|+.+.|...+++...+..... ...
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~--~~~ 173 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDN-----DE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV--SGD 173 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTS-----SC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH--HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc--ccc
Confidence 3468899999999999999999998643 11 136788999999999999999999999998866521000 001
Q ss_pred hHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001206 211 DTMKSYGDLAVFYYRLQ--HTELALKYVKRALYLLHLTCGPSHPN--TAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lG--dyeeAley~ekALei~ek~~G~dhp~--~a~al~nLA~iy~~lGdyeeAle~lekALei~~ 286 (1124)
+....+..-|++.+..| ++.+|..+|+++.+ ..+. ....+++ ++..+|++++|...++.+++..-
T Consensus 174 d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--------~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 174 NEMILNLAESYIKFATNKETATSNFYYYEELSQ--------TFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--------TSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHH
T ss_pred hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--------hCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcc
Confidence 23333444455566667 99999999999654 2333 2334444 89999999999999997776542
Q ss_pred HhcCCC--cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 001206 287 RLLGPD--HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 345 (1124)
Q Consensus 287 k~lG~d--~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~L 345 (1124)
.....+ .+..+.++.++..+...+|+ +|.++++++.+. .++|+.+.+....-
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~-----~P~hp~i~d~~~k~ 296 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL-----DHEHAFIKHHQEID 296 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT-----TCCCHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh-----CCCChHHHHHHHHH
Confidence 110000 13456778888888888997 788888887765 68998776655433
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.61 E-value=4.5e-07 Score=109.90 Aligned_cols=171 Identities=15% Similarity=0.171 Sum_probs=140.6
Q ss_pred HHHHcCCH-HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHHhcC
Q 001206 138 TALDKGKL-EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD----------FNQATIYQQKALDINERELG 206 (1124)
Q Consensus 138 ~yl~qGdy-eeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGd----------ydeAle~~~KALeI~er~lg 206 (1124)
.....|.+ ++|+.++.+++.+ +|....+|+..+.++..+|+ +++|+.++.+++.+
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~------ 102 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------ 102 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh------
Confidence 34455554 6779999999987 67888999999999999998 99999999999876
Q ss_pred CCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQ--HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-NVHVALRYLHKALK 283 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lG--dyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lG-dyeeAle~lekALe 283 (1124)
+|....++++.+.++..++ ++++|++++.+++++ ++....++++.+.++...| .+++|++++.++++
T Consensus 103 --~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 103 --NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp --CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred --CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 5667889999999999999 779999999999996 5666788999999999999 89999999999876
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 001206 284 CNQRLLGPDHIQTAASYHAIAIALSLM--------------EAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 345 (1124)
Q Consensus 284 i~~k~lG~d~p~~A~a~~nLA~ly~~l--------------Gd~eeAle~lekALei~~k~lG~dh~~t~~a~~~L 345 (1124)
.. +....+|++.+.++..+ +.+++|++++++|+.+ .+++...+....|+
T Consensus 173 ~~--------p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~-----~P~~~saW~y~~~l 235 (567)
T 1dce_A 173 RN--------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-----DPNDQSAWFYHRWL 235 (567)
T ss_dssp TT--------CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH-----CSSCSHHHHHHHHH
T ss_pred HC--------CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh-----CCCCccHHHHHHHH
Confidence 43 44567888889988875 5578899999988876 57776555444444
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.56 E-value=3e-08 Score=90.42 Aligned_cols=98 Identities=11% Similarity=0.194 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 170 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 249 (1124)
Q Consensus 170 ~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~ 249 (1124)
.+.++..+|.+++..|+|++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++.+. +
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-----S 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----S
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----C
Confidence 3568999999999999999999999999987 34457789999999999999999999999999752 2
Q ss_pred CC---hhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001206 250 SH---PNTAATYINVAMMEEGLGNVHVALRYLHK 280 (1124)
Q Consensus 250 dh---p~~a~al~nLA~iy~~lGdyeeAle~lek 280 (1124)
++ .....+++++|.++..+|++++|+..+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 70 TAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 22 12377889999999999988877765543
No 187
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.54 E-value=2e-07 Score=109.23 Aligned_cols=223 Identities=14% Similarity=0.064 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
...+...+..+...|+|++|+.+++.+++... . ..+...|+.+|.++|++.++.++++.
T Consensus 61 ~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~--------~-~~i~~~Li~~Y~Klg~l~e~e~f~~~------------ 119 (449)
T 1b89_A 61 PSSYMEVVQAANTSGNWEELVKYLQMARKKAR--------E-SYVETELIFALAKTNRLAELEEFING------------ 119 (449)
T ss_dssp ---------------------------------------------------------CHHHHTTTTTC------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc--------c-chhHHHHHHHHHHhCCHHHHHHHHcC------------
Confidence 33555666677778888888888877765311 1 22344445555555555554444421
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--H
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN--Q 286 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~--~ 286 (1124)
|.. .++.++|..|+..|+|++|..+|.++ ..+..||.++..+|+|++|++.|++|.... +
T Consensus 120 -pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk 181 (449)
T 1b89_A 120 -PNN-AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 181 (449)
T ss_dssp -C-----------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHH
T ss_pred -CcH-HHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHH
Confidence 111 14444555555555555555554433 123444455555555555554444442210 0
Q ss_pred Hh---------------cC---CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 001206 287 RL---------------LG---PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 348 (1124)
Q Consensus 287 k~---------------lG---~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l 348 (1124)
.. .+ ..++.. +..+..+|.+.|++++|+.++++++.+ .+.|-....-+..+ +.
T Consensus 182 ~v~~aCv~~~ef~lA~~~~l~L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~l-----e~ah~~~ftel~il-~~ 252 (449)
T 1b89_A 182 EVCFACVDGKEFRLAQMCGLHIVVHADE---LEELINYYQDRGYFEELITMLEAALGL-----ERAHMGMFTELAIL-YS 252 (449)
T ss_dssp HHHHHHHHTTCHHHHHHTTTTTTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTS-----TTCCHHHHHHHHHH-HH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCC-----cHHHHHHHHHHHHH-HH
Confidence 00 00 012222 335778899999999999999998864 34554443333222 21
Q ss_pred HHHhHHHHHHHHhccCCCchh---hhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHH
Q 001206 349 ESKAFEQQEAARNGTRKPDAS---IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKT 403 (1124)
Q Consensus 349 ~~k~~e~aeAl~~~~~~~~~~---~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~ye 403 (1124)
.-+-....+.+.......+.. .+.. ...+|..+.-+|...++|+.|+...-
T Consensus 253 ky~p~k~~ehl~~~~~~ini~k~~~~~~----~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 253 KFKPQKMREHLELFWSRVNIPKVLRAAE----QAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp TTCHHHHHHHHHHHSTTSCHHHHHHHHH----TTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhcCcHHHHHHH----HHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 111122222222222222211 1111 12356677788899999998887553
No 188
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.53 E-value=2e-07 Score=94.90 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=75.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHHHhcCCCCh
Q 001206 141 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF----------NQATIYQQKALDINERELGLDHP 210 (1124)
Q Consensus 141 ~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdy----------deAle~~~KALeI~er~lg~D~p 210 (1124)
+.+.|++|+..|++++++ +|..+.+|.++|.++..++++ ++|+..|++||.+ .|
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence 346789999999999988 678889999999999999875 5899999999888 46
Q ss_pred hHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Q 001206 211 DTMKSYGDLAVFYYRLQ-----------HTELALKYVKRALYL 242 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lG-----------dyeeAley~ekALei 242 (1124)
+...+|++||.+|..+| ++++|+++|++|+++
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 67889999999999885 899999999999997
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.52 E-value=5.1e-08 Score=88.88 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~ 207 (1124)
.+..++.+|..++..|+|++|+.+|++++.+ .+....++.++|.+|..+|++++|+.+|++++.+. +
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-----S 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----S
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----C
Confidence 3567889999999999999999999999987 45567899999999999999999999999999862 2
Q ss_pred CC---hhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001206 208 DH---PDTMKSYGDLAVFYYRLQHTELALKYVKR 238 (1124)
Q Consensus 208 D~---p~~a~ay~nLA~iy~~lGdyeeAley~ek 238 (1124)
++ .....++..+|.++..+|++++|+..+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 70 TAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 22 11377889999999999988888766543
No 190
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.52 E-value=6.9e-06 Score=93.18 Aligned_cols=172 Identities=14% Similarity=0.158 Sum_probs=136.8
Q ss_pred HHHHcCCHH-HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHHhcC
Q 001206 138 TALDKGKLE-DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD----------FNQATIYQQKALDINERELG 206 (1124)
Q Consensus 138 ~yl~qGdye-eAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGd----------ydeAle~~~KALeI~er~lg 206 (1124)
.....|.+. +|+.++.+++.+ +|....+++..+.++..++. +.+++.++.+++..
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~------ 103 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------ 103 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh------
Confidence 344567765 789999888866 67788899999998887766 56777777777664
Q ss_pred CCChhHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQH--TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN-VHVALRYLHKALK 283 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGd--yeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGd-yeeAle~lekALe 283 (1124)
+|....+++..+.++..+++ +++++.++.+++++ ++....+++..+.++...|. ++++++++.++++
T Consensus 104 --~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~ 173 (331)
T 3dss_A 104 --NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp --CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 56678899999999999994 89999999999985 56667889999999999999 6999999999997
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 001206 284 CNQRLLGPDHIQTAASYHAIAIALSLM--------------EAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 346 (1124)
Q Consensus 284 i~~k~lG~d~p~~A~a~~nLA~ly~~l--------------Gd~eeAle~lekALei~~k~lG~dh~~t~~a~~~La 346 (1124)
.. +....++++.+.++..+ +.++++++++.+++.+ .+++...+....++.
T Consensus 174 ~~--------p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-----~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 174 RN--------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-----DPNDQSAWFYHRWLL 237 (331)
T ss_dssp HC--------SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHH
T ss_pred HC--------CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHH
Confidence 53 34457788888888877 4578899999988876 578877776555553
No 191
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.51 E-value=6.9e-07 Score=78.41 Aligned_cols=87 Identities=30% Similarity=0.497 Sum_probs=73.8
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
.+..+.++..+|.++...|++++|+.+|++++.+ .+....++.++|.+|...|++++|+.+|++++.+
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---- 72 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---- 72 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 3456788999999999999999999999999987 2445678999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCC
Q 001206 247 CGPSHPNTAATYINVAMMEEGLG 269 (1124)
Q Consensus 247 ~G~dhp~~a~al~nLA~iy~~lG 269 (1124)
.|....++.++|.++..+|
T Consensus 73 ----~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 ----DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ----CTTCHHHHHHHHHHHHHHC
T ss_pred ----CCCCHHHHHHHHHHHHhcC
Confidence 3444677889999887654
No 192
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.47 E-value=2.4e-07 Score=94.35 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=76.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhcCCCCh
Q 001206 183 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT----------ELALKYVKRALYLLHLTCGPSHP 252 (1124)
Q Consensus 183 ~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdy----------eeAley~ekALei~ek~~G~dhp 252 (1124)
+.+.|++|+..+++++++ .|....+++++|.++..++++ ++|+.+|++||++ .|
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence 456789999999999987 466788999999999999876 5999999999987 56
Q ss_pred hHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHH
Q 001206 253 NTAATYINVAMMEEGLG-----------NVHVALRYLHKALKCN 285 (1124)
Q Consensus 253 ~~a~al~nLA~iy~~lG-----------dyeeAle~lekALei~ 285 (1124)
....++++||.+|..+| ++++|+.+|++|+++.
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 67889999999999885 8999999999999985
No 193
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.44 E-value=1.2e-06 Score=98.25 Aligned_cols=166 Identities=6% Similarity=0.029 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH----Hhc---CCHHHHHHHHHHHH
Q 001206 128 DGRQLLESSKTALDKG--KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVL----YHT---GDFNQATIYQQKAL 198 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qG--dyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly----~~l---GdydeAle~~~KAL 198 (1124)
...++...+.++...| ++++++.++.+++.+ +|....+++..+.++ ... +++++++.++.+++
T Consensus 66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l 137 (306)
T 3dra_A 66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAML 137 (306)
T ss_dssp CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 3556677788888888 999999999999987 667778899999888 666 78999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC------
Q 001206 199 DINERELGLDHPDTMKSYGDLAVFYYRLQHTE--LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN------ 270 (1124)
Q Consensus 199 eI~er~lg~D~p~~a~ay~nLA~iy~~lGdye--eAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGd------ 270 (1124)
.+ +|....++++.+.++..+|.++ ++++++.+++++ ++....++++.+.++...++
T Consensus 138 ~~--------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--------d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 138 SS--------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--------DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred Hh--------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccchhhh
Confidence 86 5667889999999999999998 999999999985 56667888999999999988
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHH-HHHHHHHH
Q 001206 271 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSV-QHEQTTLQ 325 (1124)
Q Consensus 271 yeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAl-e~lekALe 325 (1124)
++++++++++++.+. +....+++.++.++...|+..+++ .++.+++.
T Consensus 202 ~~eEl~~~~~aI~~~--------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~ 249 (306)
T 3dra_A 202 IDEELNYVKDKIVKC--------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVD 249 (306)
T ss_dssp HHHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE
T ss_pred HHHHHHHHHHHHHhC--------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 999999999998864 334577888999999999865544 45544443
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.41 E-value=2.3e-06 Score=74.98 Aligned_cols=85 Identities=24% Similarity=0.364 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 206 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg 206 (1124)
..+..++.+|..++..|++++|+.+|++++.+ .+....++.++|.+|..+|++++|+.+|++++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------ 72 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------ 72 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 34678889999999999999999999999987 3455778999999999999999999999999987
Q ss_pred CCChhHHHHHHHHHHHHHHcC
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQ 227 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lG 227 (1124)
.|....++.++|.++..+|
T Consensus 73 --~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 --DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp --CTTCHHHHHHHHHHHHHHC
T ss_pred --CCCCHHHHHHHHHHHHhcC
Confidence 3445678899999988764
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.41 E-value=1.4e-06 Score=81.09 Aligned_cols=83 Identities=14% Similarity=-0.035 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 001206 147 DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL 226 (1124)
Q Consensus 147 eAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~l 226 (1124)
+|+.+|++++.. .+....++++||.+|..+|++++|+.+|++++.+ .|....++.++|.+|..+
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence 467788888764 4566789999999999999999999999999987 345577899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 001206 227 QHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 227 GdyeeAley~ekALei~ek 245 (1124)
|++++|+.+|++++.+...
T Consensus 67 g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 67 GDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccc
Confidence 9999999999999997644
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.39 E-value=2.2e-06 Score=84.04 Aligned_cols=110 Identities=19% Similarity=0.196 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 001206 143 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 222 (1124)
Q Consensus 143 GdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~i 222 (1124)
+++++|+.+|+++.+. | ++. ++ ||.+|...+.+++|+.+|++|.+. ....++++||.+
T Consensus 9 ~d~~~A~~~~~~aa~~-----g--~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~ 66 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-----N--EMF---GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHT-----T--CTT---HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-----C--CHh---hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHH
Confidence 4688999999999865 1 222 33 999999999999999999999874 236789999999
Q ss_pred HHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 001206 223 YYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKC 284 (1124)
Q Consensus 223 y~~----lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~----lGdyeeAle~lekALei 284 (1124)
|.. .+++++|+++|++|.+. .+ ..++++||.+|.. .+++++|+.+|++|.+.
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC-------CC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999 89999999999999863 22 5778999999999 99999999999999874
No 197
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.35 E-value=2.5e-05 Score=88.63 Aligned_cols=150 Identities=7% Similarity=0.072 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 001206 145 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 222 (1124)
Q Consensus 145 yeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lG--dydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~i 222 (1124)
+++++.++.+++.. +|....+|+..+.++..++ ++++++.++.+++.+ ++....++++.+.+
T Consensus 90 l~~EL~~~~~~L~~--------~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~v 153 (331)
T 3dss_A 90 VKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFV 153 (331)
T ss_dssp HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 67777777777765 6788889999999999999 499999999999987 56678899999999
Q ss_pred HHHcCC-HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHH
Q 001206 223 YYRLQH-TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL--------------GNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 223 y~~lGd-yeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~l--------------GdyeeAle~lekALei~~k 287 (1124)
+...|. ++++++++.++++. ++....++++.+.++..+ +.++++++++.+++.+.
T Consensus 154 l~~l~~~~~eel~~~~~~I~~--------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-- 223 (331)
T 3dss_A 154 AAQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-- 223 (331)
T ss_dssp HHHTTCCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--
T ss_pred HHHhCcCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--
Confidence 999999 59999999999985 566678888899888877 56889999999998875
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHH
Q 001206 288 LLGPDHIQTAASYHAIAIALSLM-----------EAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~~l-----------Gd~eeAle~lekALei 326 (1124)
+ ....+++.+..++... +.++++++++++++++
T Consensus 224 ---P---~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 224 ---P---NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp ---T---TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---C---CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 3 3345555444444433 3456777777777665
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.35 E-value=3.1e-06 Score=78.67 Aligned_cols=83 Identities=19% Similarity=0.141 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 001206 189 QATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 268 (1124)
Q Consensus 189 eAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~l 268 (1124)
+|+.+|++++.+ .|....+++++|.+|...|++++|+.+|++++.+ .|....+++++|.+|..+
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence 467778887764 3445678999999999999999999999999986 344567889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 001206 269 GNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 269 GdyeeAle~lekALei~~k 287 (1124)
|++++|+.+|++++.+...
T Consensus 67 g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 67 GDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccc
Confidence 9999999999999998743
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.33 E-value=2.6e-06 Score=103.26 Aligned_cols=156 Identities=7% Similarity=0.046 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHH
Q 001206 128 DGRQLLESSKTALDKGK----------LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQ 195 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGd----------yeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lG--dydeAle~~~ 195 (1124)
...+++..+.++...|+ +++|+.++.+++.. +|....+|+..+.++..++ ++++|+.++.
T Consensus 62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~ 133 (567)
T 1dce_A 62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPEPNWARELELCA 133 (567)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 34556777777777777 99999999999876 7788899999999999999 7799999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC------
Q 001206 196 KALDINERELGLDHPDTMKSYGDLAVFYYRLQ-HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL------ 268 (1124)
Q Consensus 196 KALeI~er~lg~D~p~~a~ay~nLA~iy~~lG-dyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~l------ 268 (1124)
+++++ ++....++++.+.++...| .+++|++++.+++++ ++....++++.+.++..+
T Consensus 134 k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--------~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 134 RFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--------TCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------CCCCccHHHHHHHHHHhhcccccc
Confidence 99997 4667889999999999999 899999999998873 566678899999998885
Q ss_pred --------CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHH
Q 001206 269 --------GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL 315 (1124)
Q Consensus 269 --------GdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~ee 315 (1124)
+.+++|++++++|+.+. ++ ...+|+.++.++...+++++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~-----P~---~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD-----PN---DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC-----SS---CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC-----CC---CccHHHHHHHHHhcCCCccc
Confidence 56899999999999874 33 34678888999988887554
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.30 E-value=3.9e-06 Score=82.27 Aligned_cols=110 Identities=14% Similarity=0.135 Sum_probs=92.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 001206 185 GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM 264 (1124)
Q Consensus 185 GdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~i 264 (1124)
+++++|+.+|+++.+. + ++. ++ ||.+|...+.+++|+++|++|.+. . ...++++||.+
T Consensus 9 ~d~~~A~~~~~~aa~~-----g--~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~-------g---~~~a~~~Lg~~ 66 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-----N--EMF---GC--LSLVSNSQINKQKLFQYLSKACEL-------N---SGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHT-----T--CTT---HH--HHHHTCTTSCHHHHHHHHHHHHHT-------T---CHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-----C--CHh---hh--HHHHHHcCCCHHHHHHHHHHHHcC-------C---CHHHHHHHHHH
Confidence 4688999999999864 2 222 22 999999999999999999999874 2 25788999999
Q ss_pred HHH----CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 001206 265 EEG----LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 265 y~~----lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~----lGd~eeAle~lekALei 326 (1124)
|.. .+++++|+.+|++|.+. . ...++++||.+|.. .+++++|+.+|++|.+.
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~-------g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL-------N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC-------C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999 89999999999999764 1 25678999999999 99999999999999874
No 201
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.27 E-value=1.7e-05 Score=89.11 Aligned_cols=134 Identities=10% Similarity=-0.036 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 171 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 250 (1124)
Q Consensus 171 A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~d 250 (1124)
..++..+|.+|...|++++|+..+.+.+.. +. ......++..++.+|..+|+.+.|.+.+++..++
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-------- 165 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDN-----DE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-------- 165 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----SC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 345579999999999999999999998653 11 1367888999999999999999999999998664
Q ss_pred Chh----HHHHHHHH--HHHHHHCC--CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001206 251 HPN----TAATYINV--AMMEEGLG--NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 322 (1124)
Q Consensus 251 hp~----~a~al~nL--A~iy~~lG--dyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lek 322 (1124)
+++ .-.++.+| |.+....| ++.+|..+|+++.+.. ++ ......+++ ++..+|++++|...++.
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-----p~-~~~~~lLln---~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-----PT-WKTQLGLLN---LHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-----CS-HHHHHHHHH---HHHHHTCHHHHHHHHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-----CC-cccHHHHHH---HHHHcCCHHHHHHHHHH
Confidence 221 12233444 44455556 9999999999965432 11 112333433 89999999999999986
Q ss_pred HHHHH
Q 001206 323 TLQIL 327 (1124)
Q Consensus 323 ALei~ 327 (1124)
.++..
T Consensus 237 l~~~~ 241 (310)
T 3mv2_B 237 LLSDY 241 (310)
T ss_dssp HHSHH
T ss_pred HHHhc
Confidence 66553
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.25 E-value=3.6e-06 Score=77.33 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=62.4
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
+|....+++.||.+|..+|++++|+.+|++++.+ .|....++.+||.+|..+|++++|+.+|++++++...
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4566789999999999999999999999999987 3445678999999999999999999999999998654
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.22 E-value=6.9e-06 Score=75.39 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=61.9
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
+|+...+++++|.+|..+|++++|+.+|++++++ .|....+++++|.+|..+|++++|+.+|++++++...
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 3556778999999999999999999999999986 3444568999999999999999999999999998754
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.08 E-value=6.8e-06 Score=73.92 Aligned_cols=86 Identities=21% Similarity=0.305 Sum_probs=67.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001206 133 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAG-AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 211 (1124)
Q Consensus 133 l~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~-ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~ 211 (1124)
+..|..++..|++++|+.+|++++.+ ++.... ++.++|.+|..+|++++|+.+|++++.+. +++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~-- 68 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-----PDS-- 68 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTS--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCc--
Confidence 56788899999999999999999987 455667 99999999999999999999999999872 333
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 212 TMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 212 ~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
..++.+ +.+.+|+.+|++++.+
T Consensus 69 -~~~~~~--------~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 69 -PALQAR--------KMVMDILNFYNKDMYN 90 (99)
T ss_dssp -THHHHH--------HHHHHHHHHHCCTTHH
T ss_pred -HHHHHH--------HHHHHHHHHHHHHhcc
Confidence 333322 5567777777777654
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.03 E-value=8e-06 Score=73.47 Aligned_cols=88 Identities=22% Similarity=0.205 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001206 174 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK-SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 252 (1124)
Q Consensus 174 y~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~-ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp 252 (1124)
.+.+|.++...|++++|+.+|++++.+ .|.... ++.++|.+|..+|++++|+.+|++++.+ .++++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~ 69 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSP 69 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcH
Confidence 356788999999999999999999886 344466 8999999999999999999999999986 22332
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 253 NTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 253 ~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.++.+ +.+.+|+.+|++++...
T Consensus 70 ---~~~~~--------~~~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 70 ---ALQAR--------KMVMDILNFYNKDMYNQ 91 (99)
T ss_dssp ---HHHHH--------HHHHHHHHHHCCTTHHH
T ss_pred ---HHHHH--------HHHHHHHHHHHHHhccC
Confidence 22222 45667777777766554
No 206
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.99 E-value=0.00036 Score=86.39 Aligned_cols=232 Identities=8% Similarity=-0.054 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 001206 146 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT-IYQQKALDINERELGLDHPDTMKSYGDLAVFYY 224 (1124)
Q Consensus 146 eeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAl-e~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~ 224 (1124)
+.....|++||.. .+....+|...|..+...|+.++|. ..|++|+..+ |.....+..++.++.
T Consensus 326 ~Rv~~~Ye~aL~~--------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--------P~s~~Lwl~~a~~ee 389 (679)
T 4e6h_A 326 ARMTYVYMQAAQH--------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--------PNSAVLAFSLSEQYE 389 (679)
T ss_dssp HHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH
Confidence 3455678888876 3456788999999999999999997 9999998752 334566788899999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhc------CCCC--------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 001206 225 RLQHTELALKYVKRALYLLHLTC------GPSH--------PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 290 (1124)
Q Consensus 225 ~lGdyeeAley~ekALei~ek~~------G~dh--------p~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG 290 (1124)
..|++++|...|++++....... .+.. .....++...+.+....|..+.|...|.+|++...
T Consensus 390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~---- 465 (679)
T 4e6h_A 390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK---- 465 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG----
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----
Confidence 99999999999999998642110 0100 12345677778888888999999999999987521
Q ss_pred CCcHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchh
Q 001206 291 PDHIQTAASYHAIAIALSLME-AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 369 (1124)
Q Consensus 291 ~d~p~~A~a~~nLA~ly~~lG-d~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~ 369 (1124)
.. ...+|...|.+....+ +++.|...|+++++.+ ++.+..+..+..+. ...+..+.+.+++.........
T Consensus 466 ~~---~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-----p~~~~~w~~y~~fe-~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 466 LV---TPDIYLENAYIEYHISKDTKTACKVLELGLKYF-----ATDGEYINKYLDFL-IYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp GS---CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-----TTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHTTTSSS
T ss_pred CC---ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCchHHHHHHHHHH-HhCCCHHHHHHHHHHHHHhcCC
Confidence 11 1234555666666654 5999999999999875 34454433322221 1233455666665543332210
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 001206 370 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 411 (1124)
Q Consensus 370 ~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~s 411 (1124)
......++..........|+.+.+...++++++..+.
T Consensus 537 -----~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 537 -----SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp -----TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred -----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 1134567777778888899999999999999988875
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.90 E-value=0.00015 Score=83.25 Aligned_cols=141 Identities=13% Similarity=-0.043 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCH----HHHHHHHHHHH
Q 001206 126 SADGRQLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF----NQATIYQQKAL 198 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGd---yeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdy----deAle~~~KAL 198 (1124)
...+..++-.|..++.+++ +.+|+.+|++|+++ +|..+.+|..++.+|.....+ .....-+.+++
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 3456677777888877654 57899999999988 788888888888888632111 12223333444
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 001206 199 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 278 (1124)
Q Consensus 199 eI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~l 278 (1124)
..... -...+....+|.-+|.+++..|++++|+.++++|+.+ + +. ...+..+|.++...|++++|++.|
T Consensus 265 ~a~~a--~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-------n-~s-~~a~~llG~~~~~~G~~~eA~e~~ 333 (372)
T 3ly7_A 265 DNIVT--LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-------E-MS-WLNYVLLGKVYEMKGMNREAADAY 333 (372)
T ss_dssp HHHHT--CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------C-CC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHh--cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-------C-CC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 42211 1223556778888999999999999999999999997 1 22 457788999999999999999999
Q ss_pred HHHHHHH
Q 001206 279 HKALKCN 285 (1124)
Q Consensus 279 ekALei~ 285 (1124)
.+|+.+.
T Consensus 334 ~~AlrL~ 340 (372)
T 3ly7_A 334 LTAFNLR 340 (372)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 9999884
No 208
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.83 E-value=0.00014 Score=67.74 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D 208 (1124)
+..++.+|..++.+|+|..|+.+|++|+....... ........++..||.+|+.+|+++.|+.++++++.+ .++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-----~P~ 78 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPE 78 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC-CCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCC
Confidence 56678999999999999999999999998865321 113456789999999999999999999999999987 233
Q ss_pred ChhHHHHHHHHH
Q 001206 209 HPDTMKSYGDLA 220 (1124)
Q Consensus 209 ~p~~a~ay~nLA 220 (1124)
+ ..+..|++
T Consensus 79 ~---~~~~~n~~ 87 (104)
T 2v5f_A 79 H---QRANGNLK 87 (104)
T ss_dssp C---HHHHHHHH
T ss_pred C---HHHHhhHH
Confidence 4 45566666
No 209
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.81 E-value=0.00011 Score=83.99 Aligned_cols=153 Identities=10% Similarity=0.057 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHHHhc
Q 001206 129 GRQLLESSKTALDKG-KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-G-DFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qG-dyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~l-G-dydeAle~~~KALeI~er~l 205 (1124)
..++...+.++...| .+++++.++.+++.. +|....+|+..+.++..+ + ++++++.++.+++.+
T Consensus 88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--------nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~----- 154 (349)
T 3q7a_A 88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--------NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP----- 154 (349)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS-----
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh-----
Confidence 455677777888888 599999999999865 678888999999999988 7 889999888888764
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC-------
Q 001206 206 GLDHPDTMKSYGDLAVFYYRLQHTE--------LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN------- 270 (1124)
Q Consensus 206 g~D~p~~a~ay~nLA~iy~~lGdye--------eAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGd------- 270 (1124)
++....+++..+.++...+.++ ++++++.+++++ ++....++++.+.++..+++
T Consensus 155 ---dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 155 ---DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred ---CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHH
Confidence 5666788999999999988888 999999999885 56667889999999999987
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCCh
Q 001206 271 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAY 313 (1124)
Q Consensus 271 yeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~ 313 (1124)
++++++++++++.+. +....+++.+..++...|+-
T Consensus 224 ~~eELe~~~~aI~~~--------P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 224 LQDELIYILKSIHLI--------PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCC
Confidence 788999999988764 33456777788888877764
No 210
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.77 E-value=0.00037 Score=64.83 Aligned_cols=85 Identities=9% Similarity=0.100 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 001206 255 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 334 (1124)
Q Consensus 255 a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~d 334 (1124)
+.-++.||..++.+|+|..|+.+|++|++....... .......++..||.+|.++|++++|+.++++++++ .++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-----~P~ 78 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPE 78 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCC
Confidence 455789999999999999999999999998743211 12346788999999999999999999999999986 678
Q ss_pred CHHHHHHHHHH
Q 001206 335 DLRTQDAAAWL 345 (1124)
Q Consensus 335 h~~t~~a~~~L 345 (1124)
+........++
T Consensus 79 ~~~~~~n~~~~ 89 (104)
T 2v5f_A 79 HQRANGNLKYF 89 (104)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHhhHHHH
Confidence 87664444433
No 211
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.75 E-value=0.00042 Score=85.77 Aligned_cols=175 Identities=11% Similarity=-0.015 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc--
Q 001206 129 GRQLLESSKTALDKGKLEDAV-TYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL-- 205 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl-~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~l-- 205 (1124)
...++..+..+...|+.++|. ..|.+|+.. .|.....+..++.++...|+++.|...|++++.......
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--------~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~ 414 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC--------IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA 414 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh
Confidence 345566677778889999997 999999865 234456788899999999999999999999998642111
Q ss_pred ----CCC--------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHH
Q 001206 206 ----GLD--------HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-NVH 272 (1124)
Q Consensus 206 ----g~D--------~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lG-dye 272 (1124)
.+. +.....++...+.+..+.|+.+.|...|.+|++.. + .....++...|.+....+ +++
T Consensus 415 ~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~----~---~~~~~lyi~~A~lE~~~~~d~e 487 (679)
T 4e6h_A 415 LMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK----K---LVTPDIYLENAYIEYHISKDTK 487 (679)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG----G---GSCTHHHHHHHHHHHTTTSCCH
T ss_pred hhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----C---CCChHHHHHHHHHHHHhCCCHH
Confidence 010 01245577788888889999999999999998741 1 111344556677776665 499
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 273 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 273 eAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
.|..+|+++++.+ ++.+ ..+...+......|+.+.|..+|++|+..
T Consensus 488 ~Ar~ife~~Lk~~-----p~~~---~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 488 TACKVLELGLKYF-----ATDG---EYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHHHHHH-----TTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHC-----CCch---HHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999986 3333 33455677778889999999999999865
No 212
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.73 E-value=0.0036 Score=72.54 Aligned_cols=189 Identities=11% Similarity=0.020 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~-lGdydeAle~~~KALeI~er~lg~ 207 (1124)
-.+++.+|..|...|++++-.+++......+..+ .-...+.....|-..+.. -+..+.-++.+..+++-++..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~--- 92 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE--- 92 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH---
Confidence 3568899999999999999888887765554322 122344545555444433 345566667777777766541
Q ss_pred CChhHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 208 DHPDTMK--SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 208 D~p~~a~--ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.....+ .-..||.+|+..|+|.+|++++.+.+.-+.+. .+......++.....+|..++++.++..+|.+|....
T Consensus 93 -~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 93 -KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 122223 34589999999999999999999999877663 2456778888899999999999999999999999987
Q ss_pred HHhcCCCcH-HHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHH
Q 001206 286 QRLLGPDHI-QTAASYHAIAIALS-LMEAYPLSVQHEQTTLQILR 328 (1124)
Q Consensus 286 ~k~lG~d~p-~~A~a~~nLA~ly~-~lGd~eeAle~lekALei~~ 328 (1124)
.... .+| ..+.....-|.++. ..++|..|..+|-+++.-+.
T Consensus 170 ~ai~--~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 170 NAIY--CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHSC--CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred ccCC--CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 6542 333 44666777788888 89999999999999876654
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.62 E-value=0.00059 Score=78.25 Aligned_cols=135 Identities=11% Similarity=0.063 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHH
Q 001206 173 AYSLLAVVLYHTG---DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH----TELALKYVKRALYLLHL 245 (1124)
Q Consensus 173 ay~nLG~ly~~lG---dydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGd----yeeAley~ekALei~ek 245 (1124)
-++..|.-+...+ ++.+|+.+|++|+++ .|+.+.++..++.+|..... -.....-+.+++.....
T Consensus 198 dl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 198 TNFYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 3444455555544 358899999999987 57777788878877753211 12233334444443221
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 246 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 325 (1124)
Q Consensus 246 ~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALe 325 (1124)
. ...+....++..+|.++...|++++|+.++++|+.+. + . ...|..+|.++...|++++|+++|.+|+.
T Consensus 270 ~--~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~-s---~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 270 L--PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-----M-S---WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp C--GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----C-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c--ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----C-C---HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1 1234556778888888888899999999999999984 1 2 45678899999999999999999999998
Q ss_pred H
Q 001206 326 I 326 (1124)
Q Consensus 326 i 326 (1124)
+
T Consensus 339 L 339 (372)
T 3ly7_A 339 L 339 (372)
T ss_dssp H
T ss_pred c
Confidence 7
No 214
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.32 E-value=0.0063 Score=72.51 Aligned_cols=161 Identities=12% Similarity=0.026 Sum_probs=115.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHHHhcCC
Q 001206 137 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD---------FNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 137 ~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGd---------ydeAle~~~KALeI~er~lg~ 207 (1124)
..|...|++++|+.+|.+.... .-.|. ..+|+.|-.+|...+. +++|.++|++.... |
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~------Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-----G- 100 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRN------GVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-----K- 100 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHH------TCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-----T-
T ss_pred HHHHhCCCHHHHHHHHHHHHHc------CCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-----C-
Confidence 4667899999999999988764 12233 3456666555554443 56777777664431 2
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
-.|+ ..+|+.|-..|.+.|++++|+++|++.... |- .| ...+|+.|-..|...|++++|.++|++..+.
T Consensus 101 ~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~-~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--- 169 (501)
T 4g26_A 101 VVPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GI-QP-RLRSYGPALFGFCRKGDADKAYEVDAHMVES--- 169 (501)
T ss_dssp CCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TC-CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---
T ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence 2233 457889999999999999999999987542 21 22 2567888889999999999999999986542
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001206 288 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 325 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALe 325 (1124)
| -.| ...+|..|-..|.+.|+.++|.+++++..+
T Consensus 170 --G-~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 170 --E-VVP-EEPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp --T-CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --C-CCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 1 112 246788889999999999999999886543
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.32 E-value=0.0027 Score=70.52 Aligned_cols=107 Identities=16% Similarity=0.039 Sum_probs=80.7
Q ss_pred CCCchhHHHHHHHHHHHHh---c--CC------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-----CC
Q 001206 165 PYHRMTAGAYSLLAVVLYH---T--GD------FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL-----QH 228 (1124)
Q Consensus 165 ~d~p~~A~ay~nLG~ly~~---l--Gd------ydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~l-----Gd 228 (1124)
..++..+.+++.+|.+... . |+ ...|...+++|+++- .......+|..||.+|... |+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD------P~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW------PSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC------TTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC------CCcccCHHHHHHHHHHHhCCCccCCC
Confidence 3456667777777766643 1 22 456667777777761 1223567999999999996 99
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
Q 001206 229 TELALKYVKRALYLLHLTCGPSHPNT-AATYINVAMMEEG-LGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 229 yeeAley~ekALei~ek~~G~dhp~~-a~al~nLA~iy~~-lGdyeeAle~lekALei~ 285 (1124)
.++|.++|++||++ .|.. +.+++..|..|.. +|++++|..++++|+..-
T Consensus 220 ~ekA~~~ferAL~L--------nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 220 MEKAHTAFEHLTRY--------CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHHHH--------CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHh--------CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 99999999999997 3432 6777888999888 599999999999999864
No 216
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.32 E-value=0.022 Score=66.03 Aligned_cols=150 Identities=8% Similarity=-0.041 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 172 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYLLHLTCGPS 250 (1124)
Q Consensus 172 ~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~-lGdyeeAley~ekALei~ek~~G~d 250 (1124)
.+...||.+|...|++++-..++......+... ....++.+..+|-..+.. -+..+.-++.+..+++.... +
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~----~ 92 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ----E 92 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH----H
Confidence 467889999999999999888887765543221 122344444444444433 24456666777777776553 2
Q ss_pred ChhHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 001206 251 HPNTAA--TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 328 (1124)
Q Consensus 251 hp~~a~--al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~ 328 (1124)
...... +-..||.+|...|+|.+|++++.+.++-+++. .+......++.....+|..++++.++..+|.+|.++..
T Consensus 93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ 170 (394)
T 3txn_A 93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN 170 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 223333 34589999999999999999999999988665 34566788899999999999999999999999988865
Q ss_pred Hh
Q 001206 329 AK 330 (1124)
Q Consensus 329 k~ 330 (1124)
..
T Consensus 171 ai 172 (394)
T 3txn_A 171 AI 172 (394)
T ss_dssp HS
T ss_pred cC
Confidence 54
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.19 E-value=0.013 Score=65.21 Aligned_cols=103 Identities=16% Similarity=0.093 Sum_probs=78.2
Q ss_pred ChhHHHHHHHHHHHHHH---c--CC------HHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHC-----CC
Q 001206 209 HPDTMKSYGDLAVFYYR---L--QH------TELALKYVKRALYLLHLTCGPSHPN--TAATYINVAMMEEGL-----GN 270 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~---l--Gd------yeeAley~ekALei~ek~~G~dhp~--~a~al~nLA~iy~~l-----Gd 270 (1124)
.++.+..++..|.+... . |. ..+|...+++|+++ .|. ...++..||.+|... |+
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCC
Confidence 34455666666665543 1 32 36777888888876 344 567999999999996 99
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHH
Q 001206 271 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 271 yeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~-lGd~eeAle~lekALei 326 (1124)
.++|.++|++||++. ++. .+.+++.+|..|+. +|++++|..++++++++
T Consensus 220 ~ekA~~~ferAL~Ln-----P~~--~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 220 MEKAHTAFEHLTRYC-----SAH--DPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHHHC-----CTT--CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC-----CCC--CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 999999999999986 222 14667778999887 59999999999999885
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.19 E-value=0.0018 Score=59.56 Aligned_cols=67 Identities=16% Similarity=0.090 Sum_probs=59.3
Q ss_pred chhHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 168 RMTAGAYSLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 168 p~~A~ay~nLG~ly~~lGd---ydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
+..+.++..+|.+++..++ .++|..++++||.+ +|+...++..||..++..|+|++|+.+++++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556789999999987766 79999999999997 5677889999999999999999999999999874
No 219
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.18 E-value=0.004 Score=63.55 Aligned_cols=109 Identities=13% Similarity=0.052 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP-YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL- 207 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~-d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~- 207 (1124)
..+++..+.++..|.|+.|+-+...++.+....... .....+.++..+|.+++..++|..|..+|++||.+.+.+...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 457777888899999999999999998886542111 122457789999999999999999999999999987643211
Q ss_pred ----------------CChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001206 208 ----------------DHPDTMKSYGDLAVFYYRLQHTELALKYVKR 238 (1124)
Q Consensus 208 ----------------D~p~~a~ay~nLA~iy~~lGdyeeAley~ek 238 (1124)
+.+......+.+|.||..++++++|+..++.
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1122346788999999999999999988764
No 220
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.16 E-value=0.0038 Score=63.74 Aligned_cols=127 Identities=13% Similarity=-0.007 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-
Q 001206 172 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP-DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP- 249 (1124)
Q Consensus 172 ~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p-~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~- 249 (1124)
.++..-...++..|.|+.|+.....++.+.+.....-.+ ..+.++..+|..++..++|..|+.+|++||.+.+.+...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345555667788899999999999999987552111122 356788999999999999999999999999987743211
Q ss_pred ----------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 001206 250 ----------------SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 307 (1124)
Q Consensus 250 ----------------dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly 307 (1124)
+......+.+.+|.||..++++++|+..++.. +....+..+...||.+|
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---------p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI---------PSRQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---------CGGGCCHHHHHHHHHHC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---------CchhcCHHHHHHHHHHh
Confidence 11223468899999999999999999987642 11223455666677765
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.01 E-value=0.01 Score=59.92 Aligned_cols=83 Identities=23% Similarity=0.138 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHH
Q 001206 145 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG---DFNQATIYQQKALDINERELGLDHP-DTMKSYGDLA 220 (1124)
Q Consensus 145 yeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lG---dydeAle~~~KALeI~er~lg~D~p-~~a~ay~nLA 220 (1124)
+..+.+.|.+.+.. .+....+.+++|+++.+.. ++.+++.+++..+.. +.| ....++++||
T Consensus 14 l~~~~~~y~~e~~~--------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LA 78 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLA 78 (152)
T ss_dssp HHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHH
Confidence 34455556555432 2346789999999999988 677888888887774 234 5678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q 001206 221 VFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 221 ~iy~~lGdyeeAley~ekALei 242 (1124)
..|+++|+|++|++|++++|++
T Consensus 79 v~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 79 VGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhc
Confidence 9999999999999999999996
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.01 E-value=0.0022 Score=59.00 Aligned_cols=67 Identities=21% Similarity=0.083 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 211 DTMKSYGDLAVFYYRLQH---TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lGd---yeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
+....+..+|.+++..++ .++|..++++||.+ +|....+++.+|.+++..|+|++|+.+|+++++..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 345678888988877666 79999999999996 56667888999999999999999999999998753
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.81 E-value=0.012 Score=59.47 Aligned_cols=81 Identities=11% Similarity=0.114 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 001206 253 NTAATYINVAMMEEGLG---NVHVALRYLHKALKCNQRLLGPDHI-QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 328 (1124)
Q Consensus 253 ~~a~al~nLA~iy~~lG---dyeeAle~lekALei~~k~lG~d~p-~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~ 328 (1124)
....+.+++|.++.... ++++++.+|+++++.. .+ ....++++||..|.++|+|++|..++++++++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-------~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-- 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-- 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Confidence 35678899999999988 6779999999888742 23 45789999999999999999999999999997
Q ss_pred HhcCCCCHHHHHHHHHH
Q 001206 329 AKLGPDDLRTQDAAAWL 345 (1124)
Q Consensus 329 k~lG~dh~~t~~a~~~L 345 (1124)
.|++.........+
T Consensus 101 ---eP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 101 ---EPQNNQAKELERLI 114 (152)
T ss_dssp ---CTTCHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHH
Confidence 67777665554433
No 224
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.097 Score=61.44 Aligned_cols=115 Identities=14% Similarity=-0.034 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 001206 212 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 290 (1124)
Q Consensus 212 ~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~d-hp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG 290 (1124)
.++....||.+|...|++.+|...+..... +.++.. .......+.....+|...++|.+|..+++++........
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~---Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~- 211 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQV---ETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP- 211 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH---HHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC-
Confidence 566778899999999999999999988653 334433 345677888889999999999999999999865443331
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 001206 291 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 330 (1124)
Q Consensus 291 ~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~ 330 (1124)
......+..+...|.++...++|.+|..+|.+++..+...
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~ 251 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK 251 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence 2223346677889999999999999999999998876543
No 225
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.58 E-value=0.062 Score=63.96 Aligned_cols=131 Identities=14% Similarity=0.081 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHH
Q 001206 173 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH---------TELALKYVKRALYLL 243 (1124)
Q Consensus 173 ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGd---------yeeAley~ekALei~ 243 (1124)
.++.+-..|.+.|++++|+.+|++.... |. .|+ ..+|+.|-.+|...+. +++|.++|++....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-----Gv-~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~- 99 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-----GV-QLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD- 99 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-----TC-CCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-
Confidence 3455556778999999999999987653 22 232 3456666556655443 57777777765431
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001206 244 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 323 (1124)
Q Consensus 244 ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekA 323 (1124)
|- .|+ ..+|+.|-..|.+.|++++|+++|++..+. |- .| ...+|..|-..|.+.|+.++|.+.|++.
T Consensus 100 ----G~-~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~-~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 100 ----KV-VPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GI-QP-RLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp ----TC-CCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TC-CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CC-ccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 21 232 467888999999999999999999886542 11 12 2467888888999999999999988765
Q ss_pred H
Q 001206 324 L 324 (1124)
Q Consensus 324 L 324 (1124)
.
T Consensus 167 ~ 167 (501)
T 4g26_A 167 V 167 (501)
T ss_dssp H
T ss_pred H
Confidence 4
No 226
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.18 Score=58.87 Aligned_cols=111 Identities=13% Similarity=0.046 Sum_probs=89.5
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 168 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 247 (1124)
Q Consensus 168 p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~ 247 (1124)
.....++..||..|+..|++++|.+.|.++.... .+.. ..+..+..+..++...++|..+..++.++..+...
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~---~~~~--~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~-- 200 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKA---ISTG--AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK-- 200 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH---TCCC--SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CChH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc--
Confidence 3456789999999999999999999999977654 2333 36788888999999999999999999999887654
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 248 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 248 G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
+.+...........|.++...++|.+|..+|..++...
T Consensus 201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 23444455666677888999999999999998887654
No 227
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.49 E-value=0.83 Score=54.03 Aligned_cols=214 Identities=9% Similarity=-0.072 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001206 146 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 225 (1124)
Q Consensus 146 eeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~ 225 (1124)
+.....|++++..+ +....+|...+..+...|+.+.|...|++|+.. +....+ +...+..
T Consensus 196 ~Rv~~~ye~al~~~--------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~------P~~~~l---~~~y~~~--- 255 (493)
T 2uy1_A 196 SRMHFIHNYILDSF--------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM------SDGMFL---SLYYGLV--- 255 (493)
T ss_dssp HHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSHH---HHHHHHH---
T ss_pred HHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCcHHH---HHHHHhh---
Confidence 34566788877652 344678889999999999999999999999986 222221 2111211
Q ss_pred cCCHHHHHHHHHHHHHHH---HHhcC--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 001206 226 LQHTELALKYVKRALYLL---HLTCG--PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASY 300 (1124)
Q Consensus 226 lGdyeeAley~ekALei~---ek~~G--~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~ 300 (1124)
.+.++. +++....+ ....+ ..+.....++...+..+...+..+.|...|++| .. +. .....+
T Consensus 256 -~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~~--~~~~v~ 322 (493)
T 2uy1_A 256 -MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN------EG--VGPHVF 322 (493)
T ss_dssp -TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT------SC--CCHHHH
T ss_pred -cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC------CC--CChHHH
Confidence 111121 23322211 10000 012223456777778877888899999999998 21 11 123455
Q ss_pred HHHHHHHHHcC-ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHH
Q 001206 301 HAIAIALSLME-AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVS 379 (1124)
Q Consensus 301 ~nLA~ly~~lG-d~eeAle~lekALei~~k~lG~dh~~t~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~va 379 (1124)
...|.+....+ +.+.|...|+.+++.+ ++.+.....+..+. ...+..+.+.++...... ..
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~~~~~~yid~e-~~~~~~~~aR~l~er~~k------------~~ 384 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKH-----PDSTLLKEEFFLFL-LRIGDEENARALFKRLEK------------TS 384 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH-HHHTCHHHHHHHHHHSCC------------BH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHH------------HH
Confidence 55566666555 6999999999998853 34444322211111 122333444444443311 12
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 001206 380 DLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 410 (1124)
Q Consensus 380 ell~~Lg~~y~~qGdyeeAl~~yekALkL~~ 410 (1124)
.++......-...|+.+.+...+++++....
T Consensus 385 ~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 385 RMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 4565565666777999999999999887554
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.22 E-value=0.52 Score=46.00 Aligned_cols=87 Identities=24% Similarity=0.099 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHH
Q 001206 144 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP-DTMKSYGDLAVF 222 (1124)
Q Consensus 144 dyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p-~~a~ay~nLA~i 222 (1124)
.+..+.+.|.+++.. ......+.+++|+++.+..+... .++++.+++.++..+.| ..-.+++.||..
T Consensus 16 ~l~~~~~~y~~e~~~--------~~~s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 344555666665543 22456789999999998776554 34566666666655545 677889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHH
Q 001206 223 YYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 223 y~~lGdyeeAley~ekALei 242 (1124)
++++|+|++|++|++..|++
T Consensus 84 ~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 84 NYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999999986
No 229
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.19 Score=58.65 Aligned_cols=109 Identities=9% Similarity=0.034 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 001206 211 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 290 (1124)
Q Consensus 211 ~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG 290 (1124)
....++..||..|++.|++++|.++|.++...+. + ....+.++..+..++...++|..+..++.++..+....
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~---~--~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~-- 201 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI---S--TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG-- 201 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT---C--CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---C--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC--
Confidence 3456788999999999999999999999877542 2 23457888889999999999999999999998776442
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 291 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 291 ~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
.+...........|.++...++|..|..+|.+++..
T Consensus 202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 333334455666788888999999999999877654
No 230
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.65 E-value=0.73 Score=54.50 Aligned_cols=162 Identities=10% Similarity=-0.042 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---HHHhc
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI---NEREL 205 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI---~er~l 205 (1124)
...++..+..+...|+.+.|...|++|+.. +.... .+...+.. ...+ +. +++.... .+...
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~------P~~~~---l~~~y~~~-~e~~---~~---~~~l~~~~~~~~~~~ 276 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM------SDGMF---LSLYYGLV-MDEE---AV---YGDLKRKYSMGEAES 276 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSH---HHHHHHHH-TTCT---HH---HHHHHHHTC------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCcHH---HHHHHHhh-cchh---HH---HHHHHHHHHhhccch
Confidence 455666777888999999999999999976 22221 22222221 1111 11 2222211 11000
Q ss_pred C--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
Q 001206 206 G--LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-NVHVALRYLHKAL 282 (1124)
Q Consensus 206 g--~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lG-dyeeAle~lekAL 282 (1124)
+ ........++...+..+.+.++.+.|...|.+| .. . . .....+...|.+....+ +++.|...|+.++
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~----~--~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN----E--G--VGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT----S--C--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC----C--C--CChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 012234466777788888888999999999998 21 1 1 12345555676666655 6999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001206 283 KCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 323 (1124)
Q Consensus 283 ei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekA 323 (1124)
+.+ ++.+.. +...+......|+.+.|...|+++
T Consensus 348 ~~~-----~~~~~~---~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 348 LKH-----PDSTLL---KEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHC-----TTCHHH---HHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHC-----CCCHHH---HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 854 333432 333566777889999999888876
No 231
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.39 E-value=0.76 Score=53.81 Aligned_cols=114 Identities=13% Similarity=0.108 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP-YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 205 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~-d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~l 205 (1124)
..++....++.++...|+|.+|..++..... ..++. +......++.....+|...+++.+|..+++++.......
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~---Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~- 210 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQV---ETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN- 210 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH---HHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc-
Confidence 4577778899999999999999999987653 33343 334567788889999999999999999999986544332
Q ss_pred CCCChh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 206 GLDHPD-TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 206 g~D~p~-~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
..++. .+..+...|.++...++|.+|-.+|..+++....
T Consensus 211 -~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 211 -PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp -SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 33444 4566778899999999999999999999986654
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.12 E-value=0.85 Score=44.51 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 212 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP-NTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 212 ~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp-~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
...+.+++|+++.+..+... .++++.+++.++..+.| ..-.+++.||..++++|+|++|+.+++..|++-
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 46788999999998877654 33455555555544445 567889999999999999999999999999874
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.75 E-value=0.9 Score=55.53 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=29.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001206 181 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRA 239 (1124)
Q Consensus 181 y~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekA 239 (1124)
....|++++|.++.+. .++ ...+.+||..+...++++.|+++|.++
T Consensus 662 ~l~~~~~~~A~~~~~~----------~~~---~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTD----------ESA---EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTT----------CCC---HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHh----------hCc---HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3456777777665421 112 245677777778888888888877775
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.25 E-value=1.1 Score=51.40 Aligned_cols=114 Identities=17% Similarity=-0.002 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CC-----------chhHHHHHHHHHHHHhcCCHHHHHHHH
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YH-----------RMTAGAYSLLAVVLYHTGDFNQATIYQ 194 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~---d~-----------p~~A~ay~nLG~ly~~lGdydeAle~~ 194 (1124)
.+.+...|......|+.+.|...+.+|+.++.--+-. .. .....++..++..+...|++.+|+..+
T Consensus 115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l 194 (388)
T 2ff4_A 115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL 194 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4455566666677899999999999999885321100 11 112334556778888999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 195 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 250 (1124)
Q Consensus 195 ~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~d 250 (1124)
++++.. +|..-.++..|-.+|+..|+..+|++.|+++...+...+|-+
T Consensus 195 ~~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~ 242 (388)
T 2ff4_A 195 EALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 242 (388)
T ss_dssp HHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 988776 455556788888899999999999999999999877666654
No 235
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.84 E-value=15 Score=41.39 Aligned_cols=185 Identities=14% Similarity=0.057 Sum_probs=107.8
Q ss_pred HHHHHcCCH---HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001206 137 KTALDKGKL---EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 213 (1124)
Q Consensus 137 ~~yl~qGdy---eeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a 213 (1124)
...+..|+| =+|.+.|+.....+.+. ........+++.=|..+...|++.-|.++..-.++.+++..-.-. .
T Consensus 20 ~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~--k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~---~ 94 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQETRLVAARYSKQ--GNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD---G 94 (336)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC---H
T ss_pred HHHHhCCCCccccHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---H
Confidence 344566777 66666666655554432 344455566666777777888888888887777777766422111 2
Q ss_pred HHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH-------HH-HH
Q 001206 214 KSYGDLAVFYYRLQHTE-LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK-------AL-KC 284 (1124)
Q Consensus 214 ~ay~nLA~iy~~lGdye-eAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lek-------AL-ei 284 (1124)
.....|..++.....-+ .=..+.++|+....+ .|............+|.+|...+++.+|..+|-- .+ .+
T Consensus 95 ~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~m 173 (336)
T 3lpz_A 95 ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARM 173 (336)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHH
Confidence 34455666655544321 224566777765554 3332222345567789999999999999888721 11 11
Q ss_pred HHHhcCCCcHHHHHHHHH-HHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 285 NQRLLGPDHIQTAASYHA-IAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 285 ~~k~lG~d~p~~A~a~~n-LA~ly~~lGd~eeAle~lekALei~ 327 (1124)
.-+......+.....+.. .-..|...++...|...+..-.+.+
T Consensus 174 L~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 174 EYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp HHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 111111112223333332 3345678899999988777666554
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.52 E-value=0.92 Score=52.03 Aligned_cols=105 Identities=13% Similarity=-0.001 Sum_probs=77.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCC---C-----------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001206 222 FYYRLQHTELALKYVKRALYLLHLTCGPS---H-----------PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 222 iy~~lGdyeeAley~ekALei~ek~~G~d---h-----------p~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k 287 (1124)
.....|+.+.|.+.+++|+.++.--+-.+ . .....++..++..+...|++.+|+..+.+++...
T Consensus 124 ~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-- 201 (388)
T 2ff4_A 124 HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH-- 201 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--
Confidence 33456788888888888887763211111 0 1123456677888999999999999999887653
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 001206 288 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 334 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~d 334 (1124)
|..-..+..|-.+|...|+..+|+..|+++.+.+.+.+|-+
T Consensus 202 ------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~ 242 (388)
T 2ff4_A 202 ------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 242 (388)
T ss_dssp ------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 33345777888999999999999999999999998888865
No 237
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.45 E-value=2.3 Score=50.57 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001206 171 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 241 (1124)
Q Consensus 171 A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALe 241 (1124)
.+++..||.+.+....+..|..+|++|+.+ .|.....|+.||.++...|+.-+|+-||.+++.
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 357788999999999999999999999998 577899999999999999999999999999875
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.38 E-value=0.78 Score=46.22 Aligned_cols=104 Identities=18% Similarity=0.075 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 173 AYSLLAVVLYHTGDF------NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 173 ay~nLG~ly~~lGdy------deAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
.|..........|+. ++-++.|++|+....-.........+..+...|.. ...++.++|.+.|+.++.+
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~---- 89 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN---- 89 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH----
Confidence 444444444444666 66667778777654221112234456666677755 5679999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 247 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 247 ~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
|...+.++...|....++|+...|.+.+.+|+.++
T Consensus 90 ----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 90 ----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp ----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 22238888899999999999999999999999864
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.06 E-value=0.85 Score=55.76 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=38.5
Q ss_pred HHHHcCCHHHHHH-HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 001206 138 TALDKGKLEDAVT-YGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 216 (1124)
Q Consensus 138 ~yl~qGdyeeAl~-~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay 216 (1124)
..+..+++++|.+ ++.. + . . ...+..++..+...|.+++|+...+.... .
T Consensus 608 ~~~~~~~~~~a~~~~l~~-i----------~-~-~~~~~~~~~~l~~~~~~~~a~~~~~~~~~----------------~ 658 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-V----------E-G-KDSLTKIARFLEGQEYYEEALNISPDQDQ----------------K 658 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-C----------C-C-HHHHHHHHHHHHHTTCHHHHHHHCCCHHH----------------H
T ss_pred HHHHhCCHHHHHHHHHhc-C----------C-c-hHHHHHHHHHHHhCCChHHheecCCCcch----------------h
Confidence 4456889998876 4411 0 0 0 01125556667778888887765532211 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 001206 217 GDLAVFYYRLQHTELALKYVK 237 (1124)
Q Consensus 217 ~nLA~iy~~lGdyeeAley~e 237 (1124)
..+....|++++|+++.+
T Consensus 659 ---f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 659 ---FELALKVGQLTLARDLLT 676 (814)
T ss_dssp ---HHHHHHHTCHHHHHHHHT
T ss_pred ---eehhhhcCCHHHHHHHHH
Confidence 123456788888877654
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.77 E-value=0.63 Score=60.82 Aligned_cols=102 Identities=12% Similarity=0.002 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------------hc--CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 001206 215 SYGDLAVFYYRLQHTELALKYVKRALYLLHL-------------TC--GPSHPNTAATYINVAMMEEGLGNVHVALRYLH 279 (1124)
Q Consensus 215 ay~nLA~iy~~lGdyeeAley~ekALei~ek-------------~~--G~dhp~~a~al~nLA~iy~~lGdyeeAle~le 279 (1124)
..+-+|.+|...|++++|..+|++|-..... .. ..........|..+..++...+.++.++++.+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3477999999999999999999987421100 00 00111123567788899999999999999999
Q ss_pred HHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHcCChHHHHHHH
Q 001206 280 KALKCNQRLLGPDHIQ-TAASYHAIAIALSLMEAYPLSVQHE 320 (1124)
Q Consensus 280 kALei~~k~lG~d~p~-~A~a~~nLA~ly~~lGd~eeAle~l 320 (1124)
.|++.. +.+... ....|.++=..+...|+|++|...+
T Consensus 924 lAi~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 924 LADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HHHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred HHHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 998753 233332 3446778888889999999997765
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.66 E-value=1.7 Score=43.23 Aligned_cols=89 Identities=11% Similarity=0.096 Sum_probs=57.8
Q ss_pred CcchHHhHHhhhhhhhhhcCChHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 001206 105 SPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLE---DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVL 181 (1124)
Q Consensus 105 ~~f~~eDI~~L~pv~K~~~~~s~~Ar~Ll~lG~~yl~qGdye---eAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly 181 (1124)
.++..+++..+...+..-........+.|+.|+.+....+-. +++.+++..+.. .....-.+++.||..+
T Consensus 15 ~~l~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ 87 (144)
T 1y8m_A 15 EPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGC 87 (144)
T ss_dssp CCCCHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHH
Confidence 344445544444333221011233566788888887766544 455555554442 2225678999999999
Q ss_pred HhcCCHHHHHHHHHHHHHH
Q 001206 182 YHTGDFNQATIYQQKALDI 200 (1124)
Q Consensus 182 ~~lGdydeAle~~~KALeI 200 (1124)
+++|+|.+|..+.+..|++
T Consensus 88 ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 88 YKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HTTTCHHHHHHHHHHHHHT
T ss_pred HHhhhHHHHHHHHHHHHhc
Confidence 9999999999999999886
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.27 E-value=0.98 Score=56.37 Aligned_cols=120 Identities=12% Similarity=0.011 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHhc---CCCC-------hh
Q 001206 187 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY---RLQHTELALKYVKRALYLLHLTC---GPSH-------PN 253 (1124)
Q Consensus 187 ydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~---~lGdyeeAley~ekALei~ek~~---G~dh-------p~ 253 (1124)
++.|+.++++.... .|... ++...+.+.. ...+=-+|+..+.++++-..... ...+ +.
T Consensus 265 ~~~a~~~le~L~~~--------~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~ 335 (754)
T 4gns_B 265 VDFTIDYLKGLTKK--------DPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNC 335 (754)
T ss_dssp HHHHHHHHHHHHHH--------CGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--------CCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCc
Confidence 56787777775442 23222 2222222221 11233467777877775332111 1111 22
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001206 254 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 323 (1124)
Q Consensus 254 ~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekA 323 (1124)
....+...+..+...|+|+-|+++.++|..+. |....+|+.||.+|..+|+|+.|+-.+.-+
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--------PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELA--------LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--------chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 23456667888999999999999999999886 455689999999999999999998765543
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.11 E-value=22 Score=39.62 Aligned_cols=185 Identities=10% Similarity=-0.057 Sum_probs=112.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 001206 137 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 216 (1124)
Q Consensus 137 ~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay 216 (1124)
...+..|+|=+|.+.|+.....+.+. ..+......++.-+..+...|++..|.++..-.++.+++..-.- .....
T Consensus 21 ~~~I~~G~yYEAhQ~~Rtl~~Ry~~~--~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~---~~~~~ 95 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTLRTIANRYVRS--KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKV---DDISV 95 (312)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC---SHHHH
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC---CHHHH
Confidence 34456777777877777766665443 33445566677777788888999999888888888877742221 23345
Q ss_pred HHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH-----HHHHH-----
Q 001206 217 GDLAVFYYRLQHTE-LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK-----ALKCN----- 285 (1124)
Q Consensus 217 ~nLA~iy~~lGdye-eAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lek-----ALei~----- 285 (1124)
..|..++.....-+ .=.++.++|+....+. |.........+..+|..|...|++.+|..+|-. +-.+.
T Consensus 96 ~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~ 174 (312)
T 2wpv_A 96 ARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWD 174 (312)
T ss_dssp HHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 55666655433222 2246777777766554 322223346677889999999999999998741 11111
Q ss_pred -HHhcCCCcHHHHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHH
Q 001206 286 -QRLLGPDHIQTAASYHAIA-IALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 286 -~k~lG~d~p~~A~a~~nLA-~ly~~lGd~eeAle~lekALei~ 327 (1124)
.+......+.....+...| ..|..+|+...|...+..-.+.+
T Consensus 175 w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 175 WLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 1111002333344443333 35567899999988887665544
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.96 E-value=0.77 Score=46.30 Aligned_cols=98 Identities=12% Similarity=-0.070 Sum_probs=72.2
Q ss_pred HHHHHHcCCH------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 001206 220 AVFYYRLQHT------ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 293 (1124)
Q Consensus 220 A~iy~~lGdy------eeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~ 293 (1124)
...+...|+. ++-++.|++|+...--.........+.++...|.. ...++.++|.+.|+.|+.+. ..
T Consensus 20 l~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h-----Kk- 92 (161)
T 4h7y_A 20 LLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC-----KK- 92 (161)
T ss_dssp HHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC-----TT-
T ss_pred HHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh-----HH-
Confidence 3334444666 67778888888754221112344567777788866 56699999999999999862 11
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 294 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 294 p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
.+.++...|..-..+|+...|...+.+|+.+
T Consensus 93 --FAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 93 --FAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp --BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 2788888899999999999999999999874
No 245
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=90.81 E-value=2.7 Score=43.15 Aligned_cols=98 Identities=14% Similarity=0.049 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------H
Q 001206 174 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL----------L 243 (1124)
Q Consensus 174 y~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei----------~ 243 (1124)
-..++.+++..|+|..|+-++.+ .+++.+.+.-+.||..+.+|.+|+.+++..++- .
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~ 102 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR 102 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred HhhhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence 45678888999999887765432 235677777899999999999999999998831 1
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001206 244 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 244 ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei 284 (1124)
-...--+..+.-..+..+|.++.+.|+.++|+.+|......
T Consensus 103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 11111122334556778999999999999999999987765
No 246
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.75 E-value=0.29 Score=58.32 Aligned_cols=145 Identities=11% Similarity=0.073 Sum_probs=62.5
Q ss_pred HHHHcCCHHHHHHHHHHHH--HHHHHhc-CCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHHHHH-hcC
Q 001206 138 TALDKGKLEDAVTYGTKAL--AKLVAVC-GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA-------LDINER-ELG 206 (1124)
Q Consensus 138 ~yl~qGdyeeAl~~f~kAL--~i~e~i~-G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KA-------LeI~er-~lg 206 (1124)
.++..++|++|..+....+ ....... -..+...+.+|+.++.++...|+........... +..++. ++.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 4567889999988877655 2222110 0124556788888888888888776643221111 122221 233
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 207 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 207 ~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.|....+..++.|-..|...+.|++|..+..++.-.. ........+..++.+|.++..+++|.+|.++|..|+..+
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~---~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPH---TDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCT---TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCc---ccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 4555667788888999999999999999998874210 001234567888999999999999999999999988643
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.54 E-value=2 Score=53.57 Aligned_cols=120 Identities=14% Similarity=0.025 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHhcC---CCC-------hh
Q 001206 145 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVL---YHTGDFNQATIYQQKALDINERELG---LDH-------PD 211 (1124)
Q Consensus 145 yeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly---~~lGdydeAle~~~KALeI~er~lg---~D~-------p~ 211 (1124)
++.|+.+|++.... ++... +++..+.+. ....+--+|+..+.++++-...... ..+ +.
T Consensus 265 ~~~a~~~le~L~~~--------~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~ 335 (754)
T 4gns_B 265 VDFTIDYLKGLTKK--------DPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNC 335 (754)
T ss_dssp HHHHHHHHHHHHHH--------CGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--------CCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCc
Confidence 57788888775443 33332 222222222 2223445677777777754322111 111 11
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001206 212 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 281 (1124)
Q Consensus 212 ~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekA 281 (1124)
....+...+..+...|+|+-|+++.++|..+ .|....+++.||.+|..+|+|+.|+-.++.+
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2334556688888999999999999999986 4666789999999999999999999887765
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.50 E-value=1.2 Score=43.77 Aligned_cols=90 Identities=11% Similarity=0.082 Sum_probs=58.9
Q ss_pred CCcchHHhHHhhhhhhhhhcCChHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 001206 104 PSPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKL---EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVV 180 (1124)
Q Consensus 104 a~~f~~eDI~~L~pv~K~~~~~s~~Ar~Ll~lG~~yl~qGdy---eeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~l 180 (1124)
..++..+++..+...+..-........+.|+.|+.+....+- .+++.+++..+.. .....-.+++.||..
T Consensus 15 ~~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg 87 (134)
T 3o48_A 15 YEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIG 87 (134)
T ss_dssp GCCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHH
Confidence 345555555555443322101122245677888888776554 3456666554432 223567899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHH
Q 001206 181 LYHTGDFNQATIYQQKALDI 200 (1124)
Q Consensus 181 y~~lGdydeAle~~~KALeI 200 (1124)
++++|+|.+|..+.+..|++
T Consensus 88 ~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 88 CYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHTCHHHHHHHHHHHHTT
T ss_pred HHHhhhHHHHHHHHHHHHhh
Confidence 99999999999999998876
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.15 E-value=4.2 Score=40.52 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 169 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 169 ~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
-...+.+++|+++.+..+... .++++.+++.++.......-.+++.||..++++|+|++|++|.+..|++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~d----i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVND----ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHH----HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 456788999999988776543 2233333333332222256778999999999999999999999999985
No 250
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=89.11 E-value=0.82 Score=54.45 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 255 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 255 a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
..++..||.+......+..|..+|.+|+.+. |..+..|+.||.++...|++-+|+-+|.+++..
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~--------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhC--------CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 3577889999999999999999999999986 566789999999999999999999999988753
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.76 E-value=3.5 Score=40.61 Aligned_cols=80 Identities=11% Similarity=0.088 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 001206 254 TAATYINVAMMEEGLGNV---HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 330 (1124)
Q Consensus 254 ~a~al~nLA~iy~~lGdy---eeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~ 330 (1124)
...+.+++|.++....+. .+++.+++..+.. .....-.+++.||..+.++|+|++|..+.+..+++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~---- 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---- 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT----
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh----
Confidence 357788999999888765 3567777665542 22246789999999999999999999999988876
Q ss_pred cCCCCHHHHHHHHHH
Q 001206 331 LGPDDLRTQDAAAWL 345 (1124)
Q Consensus 331 lG~dh~~t~~a~~~L 345 (1124)
.|++.........+
T Consensus 108 -eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 108 -ERNNKQVGALKSMV 121 (134)
T ss_dssp -CTTCHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHH
Confidence 56776655444433
No 252
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=87.44 E-value=8.4 Score=39.59 Aligned_cols=95 Identities=14% Similarity=-0.011 Sum_probs=69.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--H--------HHHh
Q 001206 135 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD--I--------NERE 204 (1124)
Q Consensus 135 lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALe--I--------~er~ 204 (1124)
++..++..|.|..|+-++. ...++.+.+.-+.||..+.+|..|+..+++.+. + ..+.
T Consensus 39 ~~I~LyyngEY~R~Lf~L~-------------~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ 105 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLH-------------KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQE 105 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHH-------------TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred hhhhhhhcchHhHHHHHHH-------------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccce
Confidence 4556677888887765543 224566777788999999999999999998872 1 1111
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 205 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 205 lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
.-.|..+--..+..+|.++...|+.++|+.+|.++..+
T Consensus 106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 106 MFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 11223334456888999999999999999999998763
No 253
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.33 E-value=17 Score=41.73 Aligned_cols=108 Identities=10% Similarity=-0.073 Sum_probs=79.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---------CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001206 178 AVVLYHTGDFNQATIYQQKALDINERELGL---------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 248 (1124)
Q Consensus 178 G~ly~~lGdydeAle~~~KALeI~er~lg~---------D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G 248 (1124)
..+.....+..+|++++.+......+.... .......+...++..|...++.++|..+++++-..+....+
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 345566788999999888765443322111 11234566778899999999999999999999998887655
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 249 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 249 ~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.+....+..|...+..|...++|..+...+-..+...
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~ 199 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL 199 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 5555667777778889999999998877777776655
No 254
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.95 E-value=1.2 Score=53.11 Aligned_cols=143 Identities=9% Similarity=-0.014 Sum_probs=61.4
Q ss_pred HHhcCCHHHHHHHHHHHHH--HHHHhc-CCCChhHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHHHHhcC-C
Q 001206 181 LYHTGDFNQATIYQQKALD--INEREL-GLDHPDTMKSYGDLAVFYYRLQHTELALKY-------VKRALYLLHLTCG-P 249 (1124)
Q Consensus 181 y~~lGdydeAle~~~KALe--I~er~l-g~D~p~~a~ay~nLA~iy~~lGdyeeAley-------~ekALei~ek~~G-~ 249 (1124)
++..++|++|..+....+. ...... ..-+.-.+.+|+.++.++...|+......- -...+..++.... .
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 4556788888887765541 211100 011233566777778888777777654321 1122233333222 2
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 250 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 326 (1124)
Q Consensus 250 dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei 326 (1124)
|....+.+++.|-..|...+.|++|..+..++.-. .. .....+.+..++.+|.++.-+++|.+|.+++..|+..
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34456777788889999999999999999887411 00 1123456778889999999999999999999988764
No 255
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=85.85 E-value=4.9 Score=51.66 Aligned_cols=106 Identities=8% Similarity=-0.047 Sum_probs=79.7
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 167 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 246 (1124)
Q Consensus 167 ~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~ 246 (1124)
.......|+.|-..|+..|+.++|..+|.+...+..+-. .|+ ..+|+.|-..|++.|++++|+++|++..+.
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~---- 194 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDA---- 194 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----
Confidence 344566899999999999999999999987655433322 233 468999999999999999999999987652
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHH
Q 001206 247 CGPSHPNTAATYINVAMMEEGLGNV-HVALRYLHKALK 283 (1124)
Q Consensus 247 ~G~dhp~~a~al~nLA~iy~~lGdy-eeAle~lekALe 283 (1124)
|- .|+ ..+|+.|-.++.+.|+. ++|.++|++..+
T Consensus 195 -G~-~PD-vvTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 195 -GL-TPD-LLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp -TC-CCC-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred -CC-CCc-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 21 333 45677777788888874 788888887554
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.44 E-value=9.5 Score=42.66 Aligned_cols=124 Identities=6% Similarity=-0.069 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001206 172 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 251 (1124)
Q Consensus 172 ~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dh 251 (1124)
+.|..++.=|..+++|++|++++. .-|..+.+.|++..|-++..-.++.+.+..-+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~----------------------~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~-- 89 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELIS----------------------QGALSFLKAKQGGSGTDLIFYLLEVYDLAEVK-- 89 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH----------------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHH----------------------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC--
Confidence 344555555555666666655443 33444445556655555555555555543211
Q ss_pred hhHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 001206 252 PNTAATYINVAMMEEGLGNVH-VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 321 (1124)
Q Consensus 252 p~~a~al~nLA~iy~~lGdye-eAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~le 321 (1124)
........|..++.....-+ .=..+.++|+....+..+ ........+..+|..|...|++.+|..||-
T Consensus 90 -~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~-~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 90 -VDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSE-YKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp -CSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSS-CTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 11233444555544432211 225778888888766532 222234678889999999999999999884
No 257
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=85.15 E-value=5.9 Score=40.78 Aligned_cols=102 Identities=14% Similarity=0.086 Sum_probs=65.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 001206 138 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 217 (1124)
Q Consensus 138 ~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~ 217 (1124)
..+..|+++.|.++.++. .....|..||......|+++-|..+|+++-++ .
T Consensus 14 LAL~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------------~ 64 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQHSF----------------D 64 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------------H
T ss_pred HHHhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----------------H
Confidence 346789999988876542 22457999999999999999999999886332 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001206 218 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 281 (1124)
Q Consensus 218 nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekA 281 (1124)
.|..+|.-.|+.++-.+.-+.|. .. | . ++....++..+|++++++++|.+.
T Consensus 65 ~L~~Ly~~tg~~e~L~kla~iA~----~~-g--~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 65 KLSFLYLVTGDVNKLSKMQNIAQ----TR-E--D------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH----HT-T--C------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH----HC-c--c------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 34556666677654433333222 11 1 1 111234566788888888887653
No 258
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.14 E-value=6 Score=45.43 Aligned_cols=133 Identities=10% Similarity=-0.074 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---------CChhHHHHHHH
Q 001206 190 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP---------SHPNTAATYIN 260 (1124)
Q Consensus 190 Ale~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~---------dhp~~a~al~n 260 (1124)
.+.+|...+.-++....+ -..+. -+..+.....+.++|++++++........... .......+...
T Consensus 58 ~~~ly~~fi~~f~~kin~--L~lv~---~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~ 132 (393)
T 4b4t_O 58 RLRLYDNFVSKFYDKINQ--LSVVK---YLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSE 132 (393)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHH---TTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCH--HHHHH---HHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHH
Confidence 345666666655543221 11111 13345566788999999998765443322211 11235666778
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 261 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 261 LA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
++.+|...|+.++|..+++++-.......+.+....+..|...+..|...++|..+..++-..+..+
T Consensus 133 i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~ 199 (393)
T 4b4t_O 133 IARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL 199 (393)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 8999999999999999999999888776555555667777788888999999998877766666543
No 259
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=85.06 E-value=5.2 Score=51.43 Aligned_cols=106 Identities=10% Similarity=-0.084 Sum_probs=78.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
.......|+.|-..|++.|+.++|.++|.+.......-+ .|+ ..+|+.|-..|.+.|++++|+++|++..+.
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~---- 194 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDA---- 194 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----
Confidence 345567889999999999999999999987655433322 222 568889999999999999999999986542
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHH
Q 001206 289 LGPDHIQTAASYHAIAIALSLMEAY-PLSVQHEQTTLQ 325 (1124)
Q Consensus 289 lG~d~p~~A~a~~nLA~ly~~lGd~-eeAle~lekALe 325 (1124)
| -.| ...+|..|-..+.+.|+. ++|..+|++...
T Consensus 195 -G-~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 195 -G-LTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp -T-CCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred -C-CCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 1 122 235677777788888885 678888876543
No 260
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=84.75 E-value=45 Score=35.56 Aligned_cols=181 Identities=9% Similarity=-0.024 Sum_probs=102.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001206 134 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-GDFNQATIYQQKALDINERELGLDHPDT 212 (1124)
Q Consensus 134 ~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~l-GdydeAle~~~KALeI~er~lg~D~p~~ 212 (1124)
.+|.+.-+.++|++...+..++...+... +. .....=.+.|..+|-.. |....+.. .+.-.++.. ..+..
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~-~~--eLt~EERnLLSvAYKNvig~rR~swR----iissiEqke-k~~~~- 81 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFE-NS--EFDDEERHLLTLCIKHKISDYRTMTS----QVLQEQTKQ-LNNDE- 81 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TC--CCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHS-CSCHH-
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhcc-CC--CCCHHHHHHHHHHHHHhhcccHHHHH----HHHHHHHHH-cCCHH-
Confidence 67788889999999999999888732111 11 22333444555554321 11111111 111122211 11111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHH
Q 001206 213 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE-----GLGNVHVALRYLHKALKCNQR 287 (1124)
Q Consensus 213 a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~-----~lGdyeeAle~lekALei~~k 287 (1124)
...+..-|... =-.+=...+...+.+....+-+........+-..|..|. ..|+.+.|...|+.|+++...
T Consensus 82 ---~~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~ 157 (227)
T 2o8p_A 82 ---LVKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCE 157 (227)
T ss_dssp ---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHh
Confidence 11122222111 112333456667777666554332112222223354444 356689999999999999987
Q ss_pred hcCCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHH
Q 001206 288 LLGPDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 288 ~lG~d~p~~A~a~~nLA~ly~-~lGd~eeAle~lekALei~ 327 (1124)
.+.+.||.......|.+..|+ -+++.++|....++|+.+.
T Consensus 158 ~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 158 HPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp CGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred hCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 778888877777777777666 5789999999999998864
No 261
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=84.56 E-value=48 Score=35.77 Aligned_cols=185 Identities=12% Similarity=0.057 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCC-
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-GDFNQATIYQQKALDINERELGLD- 208 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~l-GdydeAle~~~KALeI~er~lg~D- 208 (1124)
.+..+|++.-+.++|++...+.+++... +......=.+.|..+|-.. |....+...+. +++..+...|.+
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~-------~~eLt~EERnLLSvAYKNvig~rR~swRiis-sieqke~~~~~~~ 77 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTEL-------NEPLSNEERNLLSVAYKNVVGARRSSWRVIS-SIEQKTSADGNEK 77 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC---CCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CCcCCHHHHHHHHHHHHhhcccchHHHHHHH-HHHHHhhccCCHH
Confidence 4567788889999999999988877653 1223333444555554321 21122222211 111111001111
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCh---hHHHHHHHHHHHHHHCC----------CHHH
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP--SHP---NTAATYINVAMMEEGLG----------NVHV 273 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~--dhp---~~a~al~nLA~iy~~lG----------dyee 273 (1124)
+...+.-|. ..+ -.+=..++...+.+....+-+ ..+ .....+-..|..|..+- -.+.
T Consensus 78 ~~~~i~~yr--~ki------e~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~ 149 (248)
T 3uzd_A 78 KIEMVRAYR--EKI------EKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVES 149 (248)
T ss_dssp -HHHHHHHH--HHH------HHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHH--HHH------HHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHH
Confidence 111111111 011 112233444555544432211 111 22222233455554321 1467
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHhc
Q 001206 274 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRAKL 331 (1124)
Q Consensus 274 Ale~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~-lGd~eeAle~lekALei~~k~l 331 (1124)
|...|++|+++....+.+.||.......+.+..|+. +++.++|....++|++-....+
T Consensus 150 a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~el 208 (248)
T 3uzd_A 150 SEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAEL 208 (248)
T ss_dssp HHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 899999999999888889999888888888877775 7999999999999887765543
No 262
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=84.28 E-value=0.4 Score=32.87 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=13.7
Q ss_pred CCCCCCCCCccCCCCC
Q 001206 925 CNGNSNVPEFIPGPFL 940 (1124)
Q Consensus 925 ~~~~~~~~~f~p~~~~ 940 (1124)
.++||++-||+||--+
T Consensus 4 s~lnp~akef~pgvky 19 (26)
T 1jgn_B 4 SNLNPNAKEFVPGVKY 19 (26)
T ss_dssp CSSCTTCCCCCTTSCT
T ss_pred ccCCcchhhcCCCcee
Confidence 4799999999999654
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.27 E-value=29 Score=45.27 Aligned_cols=102 Identities=12% Similarity=0.004 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------HHhc--CCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001206 132 LLESSKTALDKGKLEDAVTYGTKALAKL-------------VAVC--GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK 196 (1124)
Q Consensus 132 Ll~lG~~yl~qGdyeeAl~~f~kAL~i~-------------e~i~--G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~K 196 (1124)
.|-+|++++..|++++|..+|++|-.-. .... ..........|..+..++...+.++.++++.+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4778999999999999999998873211 0000 011222445678888899999999999999999
Q ss_pred HHHHHHHhcCCCChh-HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001206 197 ALDINERELGLDHPD-TMKSYGDLAVFYYRLQHTELALKYVK 237 (1124)
Q Consensus 197 ALeI~er~lg~D~p~-~a~ay~nLA~iy~~lGdyeeAley~e 237 (1124)
|+... +.+.+. ....|.++=..+...|+|++|...+.
T Consensus 925 Ai~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 925 ADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 98753 334443 33467788888999999999976664
No 264
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=82.94 E-value=58 Score=35.42 Aligned_cols=187 Identities=13% Similarity=0.052 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-GDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~l-GdydeAle~~~KALeI~er~lg~D 208 (1124)
..+..++.+.-+.++|++...+..++... +........=.+.|..+|-.. |....+...+.. ++..+...|
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~-----~~~~eLt~EERnLLSvaYKNvig~rR~swRiiss-ieqke~~k~-- 80 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNS-----LGSEELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRG-- 80 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTT--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHcc-----CCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHH-HHHHhhccC--
Confidence 34567788888899999999999987764 100122333344455444321 112222222211 111111111
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CChh-HHHHHHHHHHHHHHCCC----------HHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP--SHPN-TAATYINVAMMEEGLGN----------VHVAL 275 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~--dhp~-~a~al~nLA~iy~~lGd----------yeeAl 275 (1124)
... ...+..-|.. .=-.+=..++...+.+....+-+ ..+. ....+-..|..|..+-. .+.|.
T Consensus 81 ~~~----~~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~ 155 (260)
T 1o9d_A 81 NEE----HVNSIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL 155 (260)
T ss_dssp CHH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred cHH----HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHH
Confidence 111 1111111111 11122234455555555443211 1111 12222233555443221 35789
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHH
Q 001206 276 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRA 329 (1124)
Q Consensus 276 e~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~-lGd~eeAle~lekALei~~k 329 (1124)
..|++|+++....+.+.||.......+.+..|+. +++.++|....++|+.-...
T Consensus 156 ~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~ 210 (260)
T 1o9d_A 156 TAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIA 210 (260)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 9999999999888889999888888888887775 79999999988888765433
No 265
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=81.95 E-value=8.3 Score=39.66 Aligned_cols=100 Identities=9% Similarity=0.007 Sum_probs=60.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 001206 182 YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 261 (1124)
Q Consensus 182 ~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nL 261 (1124)
...|+++.|.+..+.. + ....|..||......|+++-|+++|+++-.. ..|
T Consensus 16 L~lg~l~~A~e~a~~l----------~---~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------------~~L 66 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL----------N---DSITWERLIQEALAQGNASLAEMIYQTQHSF----------------DKL 66 (177)
T ss_dssp HHTTCHHHHHHHHHHH----------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------------HHH
T ss_pred HhcCCHHHHHHHHHHh----------C---CHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----------------HHH
Confidence 4568888877765432 1 2446788999999999999999999886432 234
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001206 262 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 323 (1124)
Q Consensus 262 A~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekA 323 (1124)
..+|...|+.++-..+.+.|.. . .. +.....++..+|+++++++.|.++
T Consensus 67 ~~Ly~~tg~~e~L~kla~iA~~----~---g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 67 SFLYLVTGDVNKLSKMQNIAQT----R---ED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH----T---TC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHH----C---cc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4455566666543333222211 1 11 111234456778888888877654
No 266
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=79.33 E-value=72 Score=34.19 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCC-
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-GDFNQATIYQQKALDINERELGL- 207 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~l-GdydeAle~~~KALeI~er~lg~- 207 (1124)
..+..+|++.-+.++|++...+.+++... + ......=.+.|..+|-.. |....+...+. +++..+...|.
T Consensus 9 e~~v~~AklaeqaeRyddM~~~mk~v~~~-----~--~eLs~EERnLLSvaYKNvig~rR~swRiis-sieqke~~~~~~ 80 (236)
T 3iqu_A 9 ASLIQKAKLAEQAERYEDMAAFMKGAVEK-----G--EELSCEERNLLSVAYKNVVGGQRAAWRVLS-SIEQKSNEEGSE 80 (236)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----C--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTSTTCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc-----C--CcCCHHHHHHHHHHHHhhcccchHHHHHHH-HHHHHHhhcCCH
Confidence 34667788889999999999998887654 1 223333445555554321 22222222221 11111111121
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CChh-HHHHHHHHHHHHHH-----CCC-----HHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP--SHPN-TAATYINVAMMEEG-----LGN-----VHVA 274 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~--dhp~-~a~al~nLA~iy~~-----lGd-----yeeA 274 (1124)
.+...+.-|.. .+. .+=...+...+.+....+-+ ..+. ....+-..|..|.- .|+ .+.|
T Consensus 81 ~~~~~i~~yr~--kie------~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a 152 (236)
T 3iqu_A 81 EKGPEVREYRE--KVE------TELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSA 152 (236)
T ss_dssp CCCSHHHHHHH--HHH------HHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHH
T ss_pred HHHHHHHHHHH--HHH------HHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHH
Confidence 12122222211 000 11223444455544332111 1111 12222233555442 233 4678
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhcC
Q 001206 275 LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQILRAKLG 332 (1124)
Q Consensus 275 le~lekALei~~k~lG~d~p~~A~a~~nLA~ly~-~lGd~eeAle~lekALei~~k~lG 332 (1124)
...|++|+++....+.+.||.......+.+..|+ -+++.++|....++|++-....++
T Consensus 153 ~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~eld 211 (236)
T 3iqu_A 153 RSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLH 211 (236)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999988889999988888888887777 569999999999998876655544
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.34 E-value=94 Score=35.00 Aligned_cols=150 Identities=14% Similarity=0.009 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHhcCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFN-QATIYQQKALDINERELGL 207 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdyd-eAle~~~KALeI~er~lg~ 207 (1124)
.+.++.-+..++..|++..|.++..-.++.+.+.--+. .......|..++.....-+ .=..+.++|+.-..+ .|.
T Consensus 55 idLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~---~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~-~g~ 130 (336)
T 3lpz_A 55 VDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRV---DGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKK-FGD 130 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCC---CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH-HSS
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhh-cCC
Confidence 45566777888889999999998888888877652221 2245666777766655322 224567777777665 333
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHH-----------HHHHHHHHhcCCCChhHHHHHH-HHHHHHHHCCCHHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVK-----------RALYLLHLTCGPSHPNTAATYI-NVAMMEEGLGNVHVAL 275 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~e-----------kALei~ek~~G~dhp~~a~al~-nLA~iy~~lGdyeeAl 275 (1124)
........+..+|..|++.+++.+|..+|- +.+.-|.... .+.....+. ..-..|...++...|.
T Consensus 131 ~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~---~~~e~dlfiaRaVL~yL~l~n~~~A~ 207 (336)
T 3lpz_A 131 YPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD---ESHTAPLYCARAVLPYLLVANVRAAN 207 (336)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS---CGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHhCCHHHHH
Confidence 222334567789999999999999998872 1111222222 233333333 3344578889999998
Q ss_pred HHHHHHHHHH
Q 001206 276 RYLHKALKCN 285 (1124)
Q Consensus 276 e~lekALei~ 285 (1124)
.++..-++..
T Consensus 208 ~~~~~f~~~l 217 (336)
T 3lpz_A 208 TAYRIFTSAL 217 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877766654
No 268
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=77.49 E-value=80 Score=33.75 Aligned_cols=62 Identities=11% Similarity=0.016 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHhcC
Q 001206 271 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRAKLG 332 (1124)
Q Consensus 271 yeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~-lGd~eeAle~lekALei~~k~lG 332 (1124)
.+.|...|++|+++....+.+.||.......+.+..|+. +++.++|....++|++-.-..++
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~eld 208 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELD 208 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhh
Confidence 357899999999999888889999888888888887775 79999999999998876665443
No 269
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=76.40 E-value=92 Score=33.85 Aligned_cols=190 Identities=12% Similarity=0.097 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCC
Q 001206 129 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-GDFNQATIYQQKALDINERELGL 207 (1124)
Q Consensus 129 Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~l-GdydeAle~~~KALeI~er~lg~ 207 (1124)
-..+..++.+.-+.++|++...+..++...-. ........=.+.|..+|-.. |....+...+.. ++..+. +.
T Consensus 28 re~~v~~AkLaeqaeRyddmv~~mk~v~~~~~----~~~eLt~EERnLLSvAyKNvIg~rR~swRiiss-ieqke~--~k 100 (260)
T 2npm_A 28 RESNVYMAKLAEQAERYDEMAKYMKDVVEARQ----ESEELTVEERNLLSVAYKNAVGSRRSSWRIISS-VEQKEH--SR 100 (260)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCC----C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--TT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC----CCCCCCHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHhh--cc
Confidence 35567788888999999999999998776410 00122333344555554321 111122221111 111111 11
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CChh-HHHHHHHHHHHHHHCC----------CHHHH
Q 001206 208 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP--SHPN-TAATYINVAMMEEGLG----------NVHVA 274 (1124)
Q Consensus 208 D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~--dhp~-~a~al~nLA~iy~~lG----------dyeeA 274 (1124)
...... .+..-|. ..=-++=..++...+.+....+-+ ..+. ....+-..|..|..+- -.+.|
T Consensus 101 ~~~~~~----~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a 175 (260)
T 2npm_A 101 NAEDAS----KMCGKYR-SKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDA 175 (260)
T ss_dssp TCHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CcHHHH----HHHHHHH-HHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHH
Confidence 111111 1111111 111122233445555555443211 1111 1222222344444222 23578
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHhc
Q 001206 275 LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRAKL 331 (1124)
Q Consensus 275 le~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~-lGd~eeAle~lekALei~~k~l 331 (1124)
...|++|+++. ..+.+.||.......+.+..|+. +++.++|....++|++-.-..+
T Consensus 176 ~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~el 232 (260)
T 2npm_A 176 LKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIEQL 232 (260)
T ss_dssp HHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999 77889999888888888887775 7999999999998887655433
No 270
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=74.98 E-value=18 Score=38.56 Aligned_cols=94 Identities=5% Similarity=-0.078 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 001206 150 TYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLY-----HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 224 (1124)
Q Consensus 150 ~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~-----~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~ 224 (1124)
.++...+.+....+-+......-.+-..|..|+ ..|+.+.|...|+.|.+++...+.+.||-......|.+.+|+
T Consensus 99 ~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyY 178 (227)
T 2o8p_A 99 AFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILS 178 (227)
T ss_dssp HHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHH
Confidence 355556666555443322111112223343333 356788999999999999988777888877777778887766
Q ss_pred -HcCCHHHHHHHHHHHHHHH
Q 001206 225 -RLQHTELALKYVKRALYLL 243 (1124)
Q Consensus 225 -~lGdyeeAley~ekALei~ 243 (1124)
-+++.++|..+.++|+.+.
T Consensus 179 EIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 179 EKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HTSSCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHH
Confidence 4688899999999998864
No 271
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=74.47 E-value=25 Score=37.74 Aligned_cols=56 Identities=27% Similarity=0.323 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 001206 188 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYLL 243 (1124)
Q Consensus 188 deAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~-lGdyeeAley~ekALei~ 243 (1124)
+.|...|++|++++...+.+.||-......|.+.+|+. +++.++|..+.++|+.-.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~A 203 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 203 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 57888999999999888889999888888889988887 799999999888887643
No 272
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=74.24 E-value=30 Score=37.39 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 001206 188 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYLL 243 (1124)
Q Consensus 188 deAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~-lGdyeeAley~ekALei~ 243 (1124)
+.|...|++|++++...+.+.||-......|.+.+|+. +++.++|..+.++|+.-.
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~A 204 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDA 204 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 67888999999999888889999888888889888877 789999999888887643
No 273
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=72.51 E-value=1.2e+02 Score=35.63 Aligned_cols=69 Identities=9% Similarity=0.006 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH---hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH
Q 001206 175 SLLAVVLYHTGDFNQATIYQQKALDINER---ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL-LH 244 (1124)
Q Consensus 175 ~nLG~ly~~lGdydeAle~~~KALeI~er---~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei-~e 244 (1124)
.+|=.+|+++++...|...++ +++-..- .......+.+..++.+|.+++..++|.+|.+++..|+.. +-
T Consensus 180 n~L~kiYFkl~~~~lckni~k-~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFK-NFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHH-THHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH-HhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCC
Confidence 455678999999999988774 3433210 000012256777889999999999999999999999987 54
No 274
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=72.49 E-value=28 Score=37.86 Aligned_cols=55 Identities=27% Similarity=0.343 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 001206 188 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYL 242 (1124)
Q Consensus 188 deAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~-lGdyeeAley~ekALei 242 (1124)
+.|...|++|+++....+.+-||-......|.+.+|+. +++.++|..+.++|+.-
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 57888999999999888889999888888889988887 68999999888887753
No 275
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=72.31 E-value=1.2e+02 Score=33.47 Aligned_cols=156 Identities=14% Similarity=0.058 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHH
Q 001206 171 AGAYSLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE--LALKYVKRALYLLHL 245 (1124)
Q Consensus 171 A~ay~nLG~ly~~lGd---ydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdye--eAley~ekALei~ek 245 (1124)
.+.|..-|.+.-..|- -+-|.++|.+|+.++++.. .|+.....+...+...+.+...+. .-..+-.++-....+
T Consensus 99 lrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~I-sdSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~ask 177 (298)
T 2r17_C 99 LRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEI-SDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASK 177 (298)
T ss_dssp HHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHHHHh
Confidence 3444455555555555 5678889999999999854 344455666666666666666652 111222222222233
Q ss_pred hcCCCChhHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH---HHHHHHHHHHcCC
Q 001206 246 TCGPSHPNTAATYINVAMMEEG----------LGNVHVALRYLHKALKCNQRLLGPDHIQTAAS---YHAIAIALSLMEA 312 (1124)
Q Consensus 246 ~~G~dhp~~a~al~nLA~iy~~----------lGdyeeAle~lekALei~~k~lG~d~p~~A~a---~~nLA~ly~~lGd 312 (1124)
++ ..++.+.+.+.-+.+++. ..+-+..++++++||++...... ....... ..+.-..|...|.
T Consensus 178 LL--KK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d--~~~~v~LfveILn~ylyff~~g~ 253 (298)
T 2r17_C 178 LL--KKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD--PSLQVQLFIEILNRYIYFYEKEN 253 (298)
T ss_dssp CS--SHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCC--HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cc--CcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHhhhhCCC
Confidence 33 347778888888888874 24778999999999999876532 1111111 2234445555665
Q ss_pred hHHHHHHHHHHHHHHHHhc
Q 001206 313 YPLSVQHEQTTLQILRAKL 331 (1124)
Q Consensus 313 ~eeAle~lekALei~~k~l 331 (1124)
-.-..+++...+++.+..+
T Consensus 254 ~~Vt~~~in~LI~lI~~~l 272 (298)
T 2r17_C 254 DAVTIQVLNQLIQKIREDL 272 (298)
T ss_dssp TTSCHHHHHHHHHHHHTTT
T ss_pred CcccHHHHHHHHHHHHHHh
Confidence 4444555565666555433
No 276
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=71.17 E-value=1.2e+02 Score=32.91 Aligned_cols=185 Identities=14% Similarity=0.057 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCC
Q 001206 130 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-GDFNQATIYQQKALDINERELGLD 208 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~l-GdydeAle~~~KALeI~er~lg~D 208 (1124)
..+..+|++.-+.++|++...+.+++... + ......=.+.|..+|-.. |....+...+. +++..+...|
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~-----~--~eLt~EERNLLSvAYKNvIgarR~swRiis-sieqkee~~g-- 101 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGM-----D--VELTVEERNLLSVAYKNVIGARRASWRIIS-SIEQKEENKG-- 101 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----C--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTT--
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc-----C--CcCCHHHHHHHHHHHHhccCCchhHHHHHh-HHHHhhhccc--
Confidence 45677788888999999999988887653 1 223333344455554321 11122222111 1111111111
Q ss_pred ChhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCC--CChhH-HHHHHHHHHHHHHCC----------CHHHH
Q 001206 209 HPDTMKSYGDLAVFYYRLQHT-ELALKYVKRALYLLHLTCGP--SHPNT-AATYINVAMMEEGLG----------NVHVA 274 (1124)
Q Consensus 209 ~p~~a~ay~nLA~iy~~lGdy-eeAley~ekALei~ek~~G~--dhp~~-a~al~nLA~iy~~lG----------dyeeA 274 (1124)
.... ..+..-|. .+. .+=...+...+.+....+-+ ..+.. ...+-..|..|.-+- -.+.|
T Consensus 102 ~~~~----~~~i~~yr--~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a 175 (261)
T 3ubw_A 102 GEDK----LKMIREYR--QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENS 175 (261)
T ss_dssp CHHH----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cHHH----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHH
Confidence 1111 11111111 111 12233444555554432211 11221 111223355544321 14678
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHh
Q 001206 275 LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRAK 330 (1124)
Q Consensus 275 le~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~-lGd~eeAle~lekALei~~k~ 330 (1124)
...|++|+++....+.+.||.......+.+..|.. +++.++|....++|++-....
T Consensus 176 ~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~e 232 (261)
T 3ubw_A 176 LVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAE 232 (261)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999888889999888888888887775 799999999999988766554
No 277
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=70.95 E-value=33 Score=37.33 Aligned_cols=56 Identities=27% Similarity=0.323 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 001206 188 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYLL 243 (1124)
Q Consensus 188 deAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~-lGdyeeAley~ekALei~ 243 (1124)
+.|...|++|++++...+.+.||-......|.+.+|+. +++.++|..+.++|++-.
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 56788999999999888889999888888889988887 689999999888887643
No 278
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=70.16 E-value=57 Score=36.96 Aligned_cols=36 Identities=14% Similarity=0.030 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 001206 295 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 330 (1124)
Q Consensus 295 ~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~ 330 (1124)
..+.+++..|......+++-+|+.+++.|.+.+++.
T Consensus 250 ~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a 285 (363)
T 3rau_A 250 FAAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNEA 285 (363)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345667777877888899999999999988877654
No 279
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=68.38 E-value=51 Score=37.43 Aligned_cols=93 Identities=12% Similarity=-0.087 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 001206 191 TIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 268 (1124)
Q Consensus 191 le~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdy--eeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~l 268 (1124)
..+.++.|-++-.. ........++.|||.+.--.--. ..++.+|.+|+...+..++..|. .-|..+|-.|++.
T Consensus 235 ~~LQq~LLWLLyD~--GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~yR~ 309 (472)
T 3re2_A 235 SQLQQELLWLLYDM--GHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI---YPYTYLGGYYYRK 309 (472)
T ss_dssp HHHHHHHHHHHHHT--TTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc--cchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cchhhhhhhhhhc
Confidence 33445555444332 11223456778888776544333 33899999999999988876553 4566789999999
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q 001206 269 GNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 269 GdyeeAle~lekALei~~k~ 288 (1124)
+++.+|+.++-+|-...+.+
T Consensus 310 ~~~reAl~~WA~Aa~Vi~~Y 329 (472)
T 3re2_A 310 KKYYEAIASWVDAGYVAGKY 329 (472)
T ss_dssp TCHHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHHHHHHHHc
Confidence 99999999999998877554
No 280
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=68.02 E-value=32 Score=37.42 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 001206 188 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYLL 243 (1124)
Q Consensus 188 deAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~-lGdyeeAley~ekALei~ 243 (1124)
+.|...|++|++++ ..+.+-||-......|.+.+|+. +++.++|..+.++|+.-.
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 228 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMA 228 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 56888999999999 77888899888888889988887 799999999988888743
No 281
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=67.83 E-value=1.3e+02 Score=34.78 Aligned_cols=74 Identities=15% Similarity=0.009 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 169 MTAGAYSLLAVVLYHTGD--FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 169 ~~A~ay~nLG~ly~~lGd--ydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
....++.+||.+--..-. ...++.+|++|+...++.++..| ..-|..+|-.+++.++|.+|++++-.|-.....
T Consensus 260 ~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~ 335 (489)
T 4gq4_A 260 RYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQD 335 (489)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred hcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhhh
Confidence 345677788877643322 23478999999999999887776 556888999999999999999999998776543
No 282
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=66.33 E-value=2.1e+02 Score=36.60 Aligned_cols=149 Identities=12% Similarity=0.119 Sum_probs=78.9
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHH--------------------HHHHHHHhc-------C------CCChhHHH
Q 001206 168 RMTAGAYSLLAVVLYHTGDFNQATIYQQK--------------------ALDINEREL-------G------LDHPDTMK 214 (1124)
Q Consensus 168 p~~A~ay~nLG~ly~~lGdydeAle~~~K--------------------ALeI~er~l-------g------~D~p~~a~ 214 (1124)
+..-.+......+|+++|+|++|+.|.-. +++.+.+.. + .-++.+..
T Consensus 67 ~~r~laalvaSkvyy~Lg~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL~~ 146 (963)
T 4ady_A 67 SDREMAALIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLTS 146 (963)
T ss_dssp TTHHHHHHHHHHHHHHHTCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHHH
T ss_pred chHHHHHHHHHHHheeccchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHH
Confidence 34455666778899999999999977443 333221110 0 12345555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH--HHHHHHhcCC----CC-hhHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHH
Q 001206 215 SYGDLAVFYYRLQHTELALKYVKRA--LYLLHLTCGP----SH-PNTAATYINVAMMEEGLGNVHV-ALRYLHKALKCNQ 286 (1124)
Q Consensus 215 ay~nLA~iy~~lGdyeeAley~ekA--Lei~ek~~G~----dh-p~~a~al~nLA~iy~~lGdyee-Ale~lekALei~~ 286 (1124)
....+-..++..+.+.+|+.++-++ |++.++.... +. .....++..+-.+....-..++ =.++|+-+++++.
T Consensus 147 Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~ 226 (963)
T 4ady_A 147 IFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLM 226 (963)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Confidence 5566666677788888888776655 3333332211 11 1222233222222222222222 2456777777776
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001206 287 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 323 (1124)
Q Consensus 287 k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekA 323 (1124)
+...++ |..+..++..+++.+.+.+.|.++
T Consensus 227 k~~~~d-------y~~a~~~ai~LnD~~li~~if~~l 256 (963)
T 4ady_A 227 NMPNCD-------YLTLNKVVVNLNDAGLALQLFKKL 256 (963)
T ss_dssp HSSSCC-------HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hCCchh-------HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 542112 334455666666766666666654
No 283
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=65.21 E-value=1.3e+02 Score=32.18 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHH
Q 001206 229 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE-GLGNVHVALRYLHKALKCNQ 286 (1124)
Q Consensus 229 yeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~-~lGdyeeAle~lekALei~~ 286 (1124)
-+.|+..|+.|+++....+.+.||.......|.+..|+ -+++.++|..+.++|++-..
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai 207 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAM 207 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 36889999999999988888999998888888888766 46999999999888877543
No 284
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=65.17 E-value=55 Score=37.29 Aligned_cols=32 Identities=16% Similarity=0.090 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001206 296 TAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 327 (1124)
Q Consensus 296 ~A~a~~nLA~ly~~lGd~eeAle~lekALei~ 327 (1124)
.+.+++..|..+...+++.+|+.+++.|.+.+
T Consensus 252 ~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l 283 (376)
T 3r9m_A 252 TAYAYCYHGETLLASDKCGEAIRSLQEAEKLY 283 (376)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 35556666777777777777777777776654
No 285
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=64.94 E-value=61 Score=37.44 Aligned_cols=74 Identities=16% Similarity=0.034 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 212 TMKSYGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 212 ~a~ay~nLA~iy~~lGdy--eeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
...++.|||.+.-..--. ..++.+|.+|+...+..++..|. .-|..+|-.|++.+++.+|+.++-+|-...+.+
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~Y 351 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDY 351 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cceeecchhhhhcchHHHHHHHHHHHHHHHHHc
Confidence 456777777766543322 25899999999999988876553 456678999999999999999999988877544
No 286
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=64.72 E-value=67 Score=36.51 Aligned_cols=74 Identities=20% Similarity=0.139 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001206 169 MTAGAYSLLAVVLYHTGD--FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 245 (1124)
Q Consensus 169 ~~A~ay~nLG~ly~~lGd--ydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek 245 (1124)
....++.+||.+--..-- ...++.+|.+|+...++.++..| ..-|..+|-+|++.+++.+|++++-.|-...+.
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~H---vYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~ 328 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHH---IYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGK 328 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC---ccchhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 345677788776543322 23389999999999999888776 446778999999999999999999888776543
No 287
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=64.50 E-value=40 Score=38.53 Aligned_cols=32 Identities=13% Similarity=-0.034 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 001206 298 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 329 (1124)
Q Consensus 298 ~a~~nLA~ly~~lGd~eeAle~lekALei~~k 329 (1124)
.+++..|..+...+++.+|+.+++.|.+.+..
T Consensus 258 ~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~ 289 (392)
T 1zb1_A 258 LSAYYHGLHLEEENRVGEAIAFLDFSMQQLIS 289 (392)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 34455556666667777777777766665544
No 288
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=60.53 E-value=87 Score=36.26 Aligned_cols=80 Identities=18% Similarity=0.112 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-hc
Q 001206 255 AATYINVAMMEEGLGN--VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA-KL 331 (1124)
Q Consensus 255 a~al~nLA~iy~~lGd--yeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k-~l 331 (1124)
..++.+||.+....-. ...++.+|++|+...+..++..|. ..|..+|-.+.+.++|.+|+.++-+|-+.... .+
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hv---YPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY 338 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDYNY 338 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcc---cceeecchHHHHhhhHHHHHHHhhhhhhhhhhccc
Confidence 4556667766554322 234789999999999998877763 55667899999999999999999998877654 23
Q ss_pred CCCCHH
Q 001206 332 GPDDLR 337 (1124)
Q Consensus 332 G~dh~~ 337 (1124)
+.++..
T Consensus 339 ~reDeE 344 (489)
T 4gq4_A 339 CREDEE 344 (489)
T ss_dssp CTTCHH
T ss_pred ccchHH
Confidence 444543
No 289
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=60.51 E-value=83 Score=36.40 Aligned_cols=72 Identities=15% Similarity=0.033 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001206 170 TAGAYSLLAVVLYHTGDF--NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 244 (1124)
Q Consensus 170 ~A~ay~nLG~ly~~lGdy--deAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~e 244 (1124)
...++.+||.+--..--. ..++.+|.+|+...+..++..| ..-|..+|-+|++.+++.+|+.++-.|-...+
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~H---vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~ 349 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQ 349 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCC---ccceeecchhhhhcchHHHHHHHHHHHHHHHH
Confidence 455677777665432211 2478999999999999888776 44678899999999999999999988877654
No 290
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=58.81 E-value=35 Score=39.09 Aligned_cols=17 Identities=24% Similarity=0.306 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHHHHH
Q 001206 186 DFNQATIYQQKALDINE 202 (1124)
Q Consensus 186 dydeAle~~~KALeI~e 202 (1124)
....|..+|++|--++.
T Consensus 144 ~lk~A~~~fq~AAG~f~ 160 (392)
T 1zb1_A 144 DYKNSIANLTKAFSCFE 160 (392)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56778888888766654
No 291
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=57.30 E-value=68 Score=35.11 Aligned_cols=129 Identities=10% Similarity=0.043 Sum_probs=79.7
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 001206 264 MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 343 (1124)
Q Consensus 264 iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~~t~~a~~ 343 (1124)
-+.+.|.+++|++.++..++. .|..+.....|-.+++-.|+++.|...++.+.++ .++.......+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l-----~p~~~~~a~~yr 72 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-----FPEYLPGASQLR 72 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CGGGHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CchhhHHHHHHH
Confidence 345678999999998887764 3556677778899999999999999998877765 344333333322
Q ss_pred HHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhhc
Q 001206 344 WLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 413 (1124)
Q Consensus 344 ~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL~~sl~ 413 (1124)
.+.... ...+....+...+... . ....+...+ .-+......|+.++|.....+|+...+...
T Consensus 73 ~lI~aE----~~R~~vfaG~~~P~~~--g-~~~~w~~~l-l~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 73 HLVKAA----QARKDFAQGAATAKVL--G-ENEELTKSL-VSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHH----HHHHHHTTSCCCEECC--C-SCHHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHH----HHHHHHHcCCCCCCCC--C-CCHHHHHHH-HHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 222111 1122223333333211 1 122233333 223444668999999999999998876654
No 292
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=56.74 E-value=44 Score=36.50 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHHhc--CCCChhHHH
Q 001206 149 VTYGTKALAKLVAVCGPY--HRMTAGAYSLLAVVLYHTGD----------FNQATIYQQKALDINEREL--GLDHPDTMK 214 (1124)
Q Consensus 149 l~~f~kAL~i~e~i~G~d--~p~~A~ay~nLG~ly~~lGd----------ydeAle~~~KALeI~er~l--g~D~p~~a~ 214 (1124)
..++..++.+....+-+. .....-.+-..|..|+.+.. .+.|...|++|++++...+ .+.||-...
T Consensus 118 ~~iC~diL~llD~~Lip~a~~~skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLG 197 (268)
T 3efz_A 118 LLESEDVIRIIDDNLLMYSEEGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLA 197 (268)
T ss_dssp HHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCCchhHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence 445666677766654221 12122223345766665433 3678889999999998877 788998888
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 001206 215 SYGDLAVFYYR-LQHTELALKYVKRALYL 242 (1124)
Q Consensus 215 ay~nLA~iy~~-lGdyeeAley~ekALei 242 (1124)
...|.+.+|+. +++.++|..+.++|++-
T Consensus 198 LaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 198 TILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88889988884 78999999999998875
No 293
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=55.10 E-value=70 Score=34.90 Aligned_cols=56 Identities=25% Similarity=0.322 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHH
Q 001206 229 TELALKYVKRALYLLHLTC--GPSHPNTAATYINVAMMEE-GLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 229 yeeAley~ekALei~ek~~--G~dhp~~a~al~nLA~iy~-~lGdyeeAle~lekALei 284 (1124)
.+.|+..|+.|+++....+ .+.||.......|.+..|+ -+++.++|..+.++|++-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3678999999999998777 7889998888888888877 579999999999999876
No 294
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=54.71 E-value=45 Score=30.09 Aligned_cols=43 Identities=12% Similarity=0.119 Sum_probs=34.5
Q ss_pred hhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 121 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 163 (1124)
Q Consensus 121 ~~~~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~ 163 (1124)
+..+.+..|..+...|..+-..|+|++|+.+|.++++.+....
T Consensus 8 ~~~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~al 50 (86)
T 4a5x_A 8 HMDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVL 50 (86)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 4455667788888999999999999999999999999876553
No 295
>3ktp_B Trinucleotide repeat-containing gene 6C protein; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding; 1.50A {Homo sapiens}
Probab=54.16 E-value=5.4 Score=27.17 Aligned_cols=14 Identities=43% Similarity=0.719 Sum_probs=12.6
Q ss_pred CCccCCCCCCCCcc
Q 001206 932 PEFIPGPFLPGYHP 945 (1124)
Q Consensus 932 ~~f~p~~~~~~~~~ 945 (1124)
.||.||-+|-|.|-
T Consensus 8 Pef~pg~pwkG~~~ 21 (22)
T 3ktp_B 8 PEFHPGVPWKGLQN 21 (26)
T ss_pred cccccCCccccccc
Confidence 69999999999884
No 296
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=48.41 E-value=1.6e+02 Score=32.09 Aligned_cols=120 Identities=15% Similarity=0.116 Sum_probs=75.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH---H
Q 001206 138 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM---K 214 (1124)
Q Consensus 138 ~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a---~ 214 (1124)
..+..|++++|+......++. .|..+..-..|-.+++..|+++.|...++-+.++ .|... .
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--------~p~~~~~a~ 69 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPGAS 69 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhhHHHH
Confidence 456789999999998887764 6777888888999999999999999999888776 23322 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 215 SYGDLAVFYYRLQHTELALKYVKRALYLLH--LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 215 ay~nLA~iy~~lGdyeeAley~ekALei~e--k~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
.|.++-. |+..=.+.+.--. ...| ..+. ......-+......|+.++|..+-.+|++..
T Consensus 70 ~yr~lI~----------aE~~R~~vfaG~~~P~~~g-~~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 70 QLRHLVK----------AAQARKDFAQGAATAKVLG-ENEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp HHHHHHH----------HHHHHHHHTTSCCCEECCC-SCHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHH----------HHHHHHHHHcCCCCCCCCC-CCHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 2211111 1111111111000 0011 1222 3333445667777899999999999998875
No 297
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.08 E-value=45 Score=42.63 Aligned_cols=71 Identities=13% Similarity=0.027 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------------hcC--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 001206 215 SYGDLAVFYYRLQHTELALKYVKRALYLLHL-------------TCG--PSHPNTAATYINVAMMEEGLGNVHVALRYLH 279 (1124)
Q Consensus 215 ay~nLA~iy~~lGdyeeAley~ekALei~ek-------------~~G--~dhp~~a~al~nLA~iy~~lGdyeeAle~le 279 (1124)
.-+-+|.+|...|++++|..+|++|-.-+.. +.. +........|..+..++...+-++.++++.+
T Consensus 842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~ 921 (950)
T 4gq2_M 842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 921 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3477999999999999999999986521100 000 0011123466777888888888888888888
Q ss_pred HHHHHH
Q 001206 280 KALKCN 285 (1124)
Q Consensus 280 kALei~ 285 (1124)
.|+...
T Consensus 922 lAI~~~ 927 (950)
T 4gq2_M 922 LADASK 927 (950)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 887654
No 298
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=47.24 E-value=1.5e+02 Score=37.88 Aligned_cols=175 Identities=12% Similarity=0.066 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001206 126 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP--YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 203 (1124)
Q Consensus 126 s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~--d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er 203 (1124)
...+-+++.+|.++...+ ++++.++...+.--....|. .......+...||.+|.-.++ +++.+.+...+.
T Consensus 410 ~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~---- 482 (963)
T 4ady_A 410 FIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLY---- 482 (963)
T ss_dssp HHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHh----
Confidence 445777888888776555 46777776665432100011 012233456678888776665 345555544443
Q ss_pred hcCCCChhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001206 204 ELGLDHPDT-MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 282 (1124)
Q Consensus 204 ~lg~D~p~~-a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekAL 282 (1124)
.++... ..+-..||.++...|+-+....++..+.+ ..+..+ .-...+|..+...|+.+.+..+.+...
T Consensus 483 ---dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e-------~~~e~v-rR~aalgLGll~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 483 ---NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE-------TQHGNI-TRGLAVGLALINYGRQELADDLITKML 551 (963)
T ss_dssp ---TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-------CSCHHH-HHHHHHHHHHHTTTCGGGGHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc-------cCcHHH-HHHHHHHHHhhhCCChHHHHHHHHHHH
Confidence 223222 24556788888888887665555555443 123322 222344555556677766655544332
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001206 283 KCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 324 (1124)
Q Consensus 283 ei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekAL 324 (1124)
.. .+......+.+.+|..|...|+-..-...+..+.
T Consensus 552 ~~------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 552 AS------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp HC------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hC------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 21 2222223345568888888898643333444443
No 299
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=46.60 E-value=1.6e+02 Score=33.54 Aligned_cols=32 Identities=9% Similarity=0.106 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 001206 297 AASYHAIAIALSLMEAYPLSVQHEQTTLQILR 328 (1124)
Q Consensus 297 A~a~~nLA~ly~~lGd~eeAle~lekALei~~ 328 (1124)
+.+++..|..+...+++.+|+.+++.|.+.++
T Consensus 275 A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~ 306 (380)
T 3c3r_A 275 ANAEYHQSILAKQQKKFGEEIARLQHAAELIK 306 (380)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 44555667777777788888888877776543
No 300
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=45.24 E-value=3.5e+02 Score=29.85 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHh
Q 001206 130 RQLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFN--QATIYQQKALDINERE 204 (1124)
Q Consensus 130 r~Ll~lG~~yl~qGd---yeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdyd--eAle~~~KALeI~er~ 204 (1124)
+.+++-|...-..|- -+-|.++|.+|+.++++.. .+......++..+...+.....+. .-..+..++....-++
T Consensus 100 rL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~I-sdSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~askL 178 (298)
T 2r17_C 100 RLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEI-SDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL 178 (298)
T ss_dssp HHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHHHHhc
Confidence 444455555545555 5678889999999999854 344455666666666666665542 2222333443333333
Q ss_pred cCCCChhHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH---HHHHHHHHHHCCCH
Q 001206 205 LGLDHPDTMKSYGDLAVFYYR----------LQHTELALKYVKRALYLLHLTCGPSHPNTAAT---YINVAMMEEGLGNV 271 (1124)
Q Consensus 205 lg~D~p~~a~ay~nLA~iy~~----------lGdyeeAley~ekALei~ek~~G~dhp~~a~a---l~nLA~iy~~lGdy 271 (1124)
+ ..++.+++.+..+.+++. ..+-+..+++++||+++..... +....... ..|.-..|+..|+-
T Consensus 179 L--KK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~--d~~~~v~LfveILn~ylyff~~g~~ 254 (298)
T 2r17_C 179 L--KKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCM--DPSLQVQLFIEILNRYIYFYEKEND 254 (298)
T ss_dssp S--SHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred c--CcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHhhhhCCCC
Confidence 2 347888998888888874 2467899999999999987753 21111222 23445556666765
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001206 272 HVALRYLHKALKCNQRL 288 (1124)
Q Consensus 272 eeAle~lekALei~~k~ 288 (1124)
.-..++++..+++.++.
T Consensus 255 ~Vt~~~in~LI~lI~~~ 271 (298)
T 2r17_C 255 AVTIQVLNQLIQKIRED 271 (298)
T ss_dssp TSCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHH
Confidence 55666677777666543
No 301
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=43.96 E-value=1.6e+02 Score=35.74 Aligned_cols=131 Identities=8% Similarity=-0.015 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001206 132 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 211 (1124)
Q Consensus 132 Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~ 211 (1124)
++..+...+...+.+.|..++.+..... .-...........+|.-+...+...++...+.++... .....
T Consensus 217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~----~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 286 (618)
T 1qsa_A 217 MAAVAFASVARQDAENARLMIPSLAQAQ----QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR------SQSTS 286 (618)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT------CCCHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhhhcc----CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc------CCChH
Confidence 4444445555567788888776654321 1122333445555665555556355666666654321 22333
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001206 212 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 283 (1124)
Q Consensus 212 ~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALe 283 (1124)
... ...+. .++.|+++.|..+|.+.-. .........+-+|..+..+|+.++|..+|+++..
T Consensus 287 ~~e--~~~r~-Alr~~d~~~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 287 LIE--RRVRM-ALGTGDRRGLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHH--HHHHH-HHHHTCHHHHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHH--HHHHH-HHHCCCHHHHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 322 22333 3467999999998865322 2234567789999999999999999999998764
No 302
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=41.70 E-value=2.1e+02 Score=34.81 Aligned_cols=128 Identities=12% Similarity=-0.028 Sum_probs=78.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001206 176 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 255 (1124)
Q Consensus 176 nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALei~ek~~G~dhp~~a 255 (1124)
.++.......+.+.|..++.+.... ...+..........+|.-+...+...++..++.++... .......
T Consensus 219 ~~~~~rlar~d~~~A~~~~~~~~~~----~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 288 (618)
T 1qsa_A 219 AVAFASVARQDAENARLMIPSLAQA----QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR------SQSTSLI 288 (618)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT------CCCHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHhhhhc----cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc------CCChHHH
Confidence 3455555556778888777665432 11223334445555666566666466777777764421 1223332
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001206 256 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 324 (1124)
Q Consensus 256 ~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekAL 324 (1124)
. ..++. ....|+++.|..+|++.-. .........+-+|.++..+|+.++|..+|+++.
T Consensus 289 e--~~~r~-Alr~~d~~~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 289 E--RRVRM-ALGTGDRRGLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp H--HHHHH-HHHHTCHHHHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred H--HHHHH-HHHCCCHHHHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2 23333 3456999999998864322 222346678889999999999999999888764
No 303
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=41.24 E-value=4.3e+02 Score=29.76 Aligned_cols=37 Identities=3% Similarity=-0.289 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHHH
Q 001206 125 SSADGRQLLESSKTALDKG------------KLEDAVTYGTKALAKLVA 161 (1124)
Q Consensus 125 ~s~~Ar~Ll~lG~~yl~qG------------dyeeAl~~f~kAL~i~e~ 161 (1124)
....+-.++++|.+|...+ ....|..+|++|-.++.-
T Consensus 110 ~fE~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~~ 158 (376)
T 3r9m_A 110 VFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKH 158 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3455666777776654432 267888999998877653
No 304
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=40.20 E-value=93 Score=29.66 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 163 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~ 163 (1124)
..|..+...|...-..|+|++|+.+|.++++++...+
T Consensus 16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~al 52 (117)
T 2cpt_A 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVV 52 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 3466677778778889999999999999999877653
No 305
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=39.99 E-value=1.3e+02 Score=37.03 Aligned_cols=34 Identities=9% Similarity=0.050 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 001206 296 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 329 (1124)
Q Consensus 296 ~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k 329 (1124)
.+.+++..|..+...+++.+|+.+++.|...+..
T Consensus 259 ~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~ 292 (704)
T 2xs1_A 259 QANAEYHQSILAKQQYYFGEEIARLQHAAELIKT 292 (704)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Confidence 4456667788888889999999999999887754
No 306
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=39.73 E-value=92 Score=28.51 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHH-HHHHHHH
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAY-SLLAVVL 181 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay-~nLG~ly 181 (1124)
..+|.++..|..++..++|.+|..+|+++..+ .+++.+-.++ +.|+.|-
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHHH
Confidence 56888999999999999999999999999876 3456655555 5555553
No 307
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=38.84 E-value=2e+02 Score=27.32 Aligned_cols=28 Identities=18% Similarity=0.081 Sum_probs=22.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 001206 304 AIALSLMEAYPLSVQHEQTTLQILRAKL 331 (1124)
Q Consensus 304 A~ly~~lGd~eeAle~lekALei~~k~l 331 (1124)
|.-+-..|+|++|+.+|..|+++|...+
T Consensus 25 Ave~D~ag~y~eAl~lY~~Aie~l~~al 52 (117)
T 2cpt_A 25 AAQEDKAGNYEEALQLYQHAVQYFLHVV 52 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 3344567999999999999999988765
No 308
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=37.11 E-value=3.8e+02 Score=27.93 Aligned_cols=86 Identities=10% Similarity=0.014 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC
Q 001206 234 KYVKRALYLLHLTC-GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEA 312 (1124)
Q Consensus 234 ey~ekALei~ek~~-G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd 312 (1124)
.++++++..+...- -.+++....++...+..+ ..+...++.++|.-.... -.|. ..+..|...|..+..+|+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~---~IG~---~~AlfYe~wA~~lE~~g~ 130 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK---GIGT---KLSLFYEEFSKLLENAQF 130 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH---TSST---TBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC---CCcH---HHHHHHHHHHHHHHHcCC
Confidence 57777777654321 135777888888877766 234466888888765442 2343 346778888999999999
Q ss_pred hHHHHHHHHHHHHH
Q 001206 313 YPLSVQHEQTTLQI 326 (1124)
Q Consensus 313 ~eeAle~lekALei 326 (1124)
+.+|...|+.+++-
T Consensus 131 ~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 131 FLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998874
No 309
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=36.96 E-value=3.6e+02 Score=30.32 Aligned_cols=40 Identities=10% Similarity=-0.090 Sum_probs=28.6
Q ss_pred hcCChHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHH
Q 001206 122 AACSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVA 161 (1124)
Q Consensus 122 ~~~~s~~Ar~Ll~lG~~yl~qG---------dyeeAl~~f~kAL~i~e~ 161 (1124)
.......+-.++++|.+|...+ ....|..+|++|-.++.-
T Consensus 110 ~sl~fE~a~VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~~ 158 (363)
T 3rau_A 110 EDIKYEQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAY 158 (363)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Confidence 3445566778888888875543 367888999998877654
No 310
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=36.58 E-value=2.3e+02 Score=25.31 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC-CCCHHH
Q 001206 299 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG-PDDLRT 338 (1124)
Q Consensus 299 a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG-~dh~~t 338 (1124)
.+...|.-+-..|+|++|+.+|..+++.+...+. ..++..
T Consensus 18 ~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~ 58 (86)
T 4a5x_A 18 TVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTK 58 (86)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence 3444555556889999999999999999877653 334444
No 311
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=35.34 E-value=1.9e+02 Score=33.39 Aligned_cols=29 Identities=10% Similarity=-0.098 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001206 214 KSYGDLAVFYYRLQHTELALKYVKRALYL 242 (1124)
Q Consensus 214 ~ay~nLA~iy~~lGdyeeAley~ekALei 242 (1124)
..+..|+..+...|+|.+|--++..+..+
T Consensus 12 ~wl~~La~~h~~~~n~~EAa~cl~~~aal 40 (428)
T 2wm9_A 12 TWLDSMARIHVKNGDLSEAAMCYVHVTAL 40 (428)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45678999999999999998888755543
No 312
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=34.94 E-value=64 Score=28.87 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAV 162 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i 162 (1124)
..|..+...|..+-..|+|++|+.+|.++++.+...
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~a 52 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQL 52 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 346677788888889999999999999999987653
No 313
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=33.81 E-value=66 Score=28.70 Aligned_cols=35 Identities=34% Similarity=0.398 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 128 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAV 162 (1124)
Q Consensus 128 ~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i 162 (1124)
.|..+...|..+-..|+|++|+.+|.++++.+...
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~ 44 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQI 44 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 46667778888889999999999999999887653
No 314
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=33.75 E-value=66 Score=37.74 Aligned_cols=73 Identities=5% Similarity=-0.110 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HH
Q 001206 255 AATYINVAMMEEGLGNVHVALRYLHKALKCNQR---LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI-LR 328 (1124)
Q Consensus 255 a~al~nLA~iy~~lGdyeeAle~lekALei~~k---~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei-~~ 328 (1124)
....++|-.+|+++++...+..+++. ++-..- ...-...+.+.-++.+|.++...++|.+|.+++..|+.. +.
T Consensus 176 l~l~n~L~kiYFkl~~~~lckni~k~-i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 176 LYLVNKLNNIYFRIESPQLCSNIFKN-FQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHHHHHHSSCCTTHHHHHHT-HHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH-hccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCC
Confidence 33445677899999999999888854 333211 000112356677889999999999999999999999987 54
No 315
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.20 E-value=2.6e+02 Score=35.71 Aligned_cols=70 Identities=13% Similarity=-0.084 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-------------HhcC--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001206 173 AYSLLAVVLYHTGDFNQATIYQQKALDINE-------------RELG--LDHPDTMKSYGDLAVFYYRLQHTELALKYVK 237 (1124)
Q Consensus 173 ay~nLG~ly~~lGdydeAle~~~KALeI~e-------------r~lg--~D~p~~a~ay~nLA~iy~~lGdyeeAley~e 237 (1124)
.-+.+|.+|...|++++|..+|++|-.-.. .++. .........|..+..++...+-++-++++.+
T Consensus 842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~ 921 (950)
T 4gq2_M 842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 921 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 347899999999999999999998742110 0000 0001122345556666666666666666666
Q ss_pred HHHHH
Q 001206 238 RALYL 242 (1124)
Q Consensus 238 kALei 242 (1124)
.|+..
T Consensus 922 lAI~~ 926 (950)
T 4gq2_M 922 LADAS 926 (950)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 66653
No 316
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=32.20 E-value=74 Score=29.34 Aligned_cols=36 Identities=19% Similarity=-0.010 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 253 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 253 ~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
..+..+...|..+...|+|++|+++.++|..+..+.
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eA 48 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA 48 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 346667788999999999999999999998876554
No 317
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.24 E-value=1.5e+02 Score=31.44 Aligned_cols=82 Identities=6% Similarity=0.010 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 001206 233 LKYVKRALYLLHLT-CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 311 (1124)
Q Consensus 233 ley~ekALei~ek~-~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lG 311 (1124)
..++++++..+... .-.+++....++...+... +.+.++|.-... +-.|. ..+..|...|.++..+|
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~------~~p~~if~~L~~---~~IG~---~~AlfYe~wA~~lE~~g 164 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI------DEPVELFSFLAH---HHIGQ---ESSIFYEEYANYFESRG 164 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC------SCHHHHHHHHHH---TTCST---TBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc------CCHHHHHHHHHH---CCcch---hHHHHHHHHHHHHHHcC
Confidence 45667776654321 1135667777777766631 355566654332 22233 34677888899999999
Q ss_pred ChHHHHHHHHHHHHH
Q 001206 312 AYPLSVQHEQTTLQI 326 (1124)
Q Consensus 312 d~eeAle~lekALei 326 (1124)
++.+|...|+.+++-
T Consensus 165 ~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 165 LFQKADEVYQKGKRM 179 (223)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999998874
No 318
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=30.63 E-value=1.3e+02 Score=26.77 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 001206 300 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 333 (1124)
Q Consensus 300 ~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~ 333 (1124)
...+|+=|...|+|+.|+.+|+.+++...+.+..
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~ 48 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYS 48 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 4568889999999999999999999988776544
No 319
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=30.34 E-value=80 Score=28.25 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=23.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 259 INVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 259 ~nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
...|.-+-..|+|++|+.+|.++++.+...
T Consensus 23 v~~Ave~D~~g~y~eAl~lY~~aie~l~~a 52 (83)
T 2w2u_A 23 AINAVKADKEGNAEEAITNYKKAIEVLAQL 52 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 344555678899999999999999987543
No 320
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=29.82 E-value=6.2e+02 Score=28.18 Aligned_cols=161 Identities=12% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH-------------------------------------HHHHhcCCC-------ChhH
Q 001206 219 LAVFYYRLQHTELALKYVKRALY-------------------------------------LLHLTCGPS-------HPNT 254 (1124)
Q Consensus 219 LA~iy~~lGdyeeAley~ekALe-------------------------------------i~ek~~G~d-------hp~~ 254 (1124)
++.-|...|.|+.|+.++++=+. -+.+....+ ....
T Consensus 22 laadhvaAGsFe~A~~lLnrQ~Givnf~PLk~~F~~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~~l~~ 101 (320)
T 3mkr_B 22 LPVDHILAGSFETAMRLLHDQVGVTQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGLKNGVPAVGLKLND 101 (320)
T ss_dssp CHHHHHHTTCHHHHHHHHHHHSCBCCCGGGHHHHHHHHTTSCEEECSSTTSCCEEECCBTTTTTCCSSSCCBCCCCCHHH
T ss_pred cHHHHHHccCHHHHHHHHHHHhCccCchhhHHHHHHHHHHHhhhccCCCCCCcchhhhcCCccccccccCCCCcccCHHH
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 001206 255 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 334 (1124)
Q Consensus 255 a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~d 334 (1124)
.......|.-+...|++.+|+..|+.+|...--..-.+..+...+...+..+ ..-.+--.+++.++.++..
T Consensus 102 l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~ic---------reYilal~iEl~Rr~l~~~ 172 (320)
T 3mkr_B 102 LIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITIC---------REYIVGLSMETERKKLPKE 172 (320)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHH---------HHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhcccC
Q ss_pred CHHH-HHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001206 335 DLRT-QDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 408 (1124)
Q Consensus 335 h~~t-~~a~~~La~l~~k~~e~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y~~qGdyeeAl~~yekALkL 408 (1124)
.+.. ...+..-+|+..-..+-. +..-.+..-=....+.++|..|..+-++.|++
T Consensus 173 ~~~~~kR~lELAAYFT~c~Lqp~--------------------H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel 227 (320)
T 3mkr_B 173 TLEQQKRICEMAAYFTHSNLQPV--------------------HMILVLRTALNLFFKLKNFRTAAAFARRLLEL 227 (320)
T ss_dssp SHHHHHHHHHHHHHHTTSCCCHH--------------------HHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHhccCCCcHH--------------------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
No 321
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=29.46 E-value=2.6e+02 Score=33.02 Aligned_cols=49 Identities=20% Similarity=0.148 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001206 230 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 284 (1124)
Q Consensus 230 eeAley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei 284 (1124)
++|+++|++|+..++++...+.+.....+.+++..| +-|-.+|.+|-+.
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~y------E~aGDyy~~AA~k 497 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKH------EMAGDYYVNAARK 497 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhh------hhccHHHHHHHHH
Confidence 567888888888888877777777777777776654 4444555555443
No 322
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=29.32 E-value=5.4e+02 Score=28.98 Aligned_cols=38 Identities=13% Similarity=-0.007 Sum_probs=25.8
Q ss_pred cCChHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHH
Q 001206 123 ACSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLV 160 (1124)
Q Consensus 123 ~~~s~~Ar~Ll~lG~~yl~qG---------dyeeAl~~f~kAL~i~e 160 (1124)
......+-.++++|.++...+ .+..|..+|++|-.++.
T Consensus 136 ~l~fE~a~VLfNlgal~s~~A~~~~r~~~eglK~A~~~fq~AAG~f~ 182 (380)
T 3c3r_A 136 SLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFL 182 (380)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 344566778888887765432 15778888888877654
No 323
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=28.75 E-value=88 Score=27.86 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=22.6
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001206 260 NVAMMEEGLGNVHVALRYLHKALKCNQRL 288 (1124)
Q Consensus 260 nLA~iy~~lGdyeeAle~lekALei~~k~ 288 (1124)
..|.-+-..|+|++|+.+|.++++.+...
T Consensus 16 ~~Ave~D~~g~y~eAl~lY~~aie~l~~~ 44 (83)
T 2v6y_A 16 ILAVKADKEGKVEDAITYYKKAIEVLSQI 44 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 33455578899999999999999987543
No 324
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=27.90 E-value=2.9e+02 Score=24.99 Aligned_cols=70 Identities=10% Similarity=0.027 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001206 253 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR--LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 322 (1124)
Q Consensus 253 ~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k--~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lek 322 (1124)
..+..+...|.-+...|+|++|+.+|..+++.+.. ....+......+...+...+.+...+...+..-.+
T Consensus 13 ~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l~~~~~ 84 (93)
T 1wfd_A 13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQEKE 84 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
No 325
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=26.46 E-value=3.4e+02 Score=32.15 Aligned_cols=48 Identities=19% Similarity=0.054 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001206 188 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 241 (1124)
Q Consensus 188 deAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGdyeeAley~ekALe 241 (1124)
.+|+++|++|+..+++....+.+.....+.+++..| +-|-.||.+|-+
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~y------E~aGDyy~~AA~ 496 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKH------EMAGDYYVNAAR 496 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhh------hhccHHHHHHHH
Confidence 678899999999999988888888888888887654 444455665544
No 326
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=26.28 E-value=9.6e+02 Score=29.26 Aligned_cols=210 Identities=15% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHhcCCCChhHHH
Q 001206 137 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFN--QATIYQQKALDINERELGLDHPDTMK 214 (1124)
Q Consensus 137 ~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdyd--eAle~~~KALeI~er~lg~D~p~~a~ 214 (1124)
.+++-.|+|+.|+.++.+. .....+ |-.++-.++.|=.+-..+..++ ...-.|-+.+..+-+.+...++..+.
T Consensus 302 ~vLlLtgqFE~AI~~L~~~-~~vdAV----H~AIaL~~~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al 376 (661)
T 2qx5_A 302 QTLLLSGLYGLAIDYTYTF-SEMDAV----HLAIGLASLKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAV 376 (661)
T ss_dssp HHHHHTTCHHHHHHHHHTT-CHHHHH----HHHHHHHHTTC-----------------CHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHhhHHHHHHHHHhc-CchhHH----HHHHHHHHcCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHH
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------HHHHhcC-----CCChhHHHHHHHHHHH
Q 001206 215 SYGDLAVFYYRLQHTELALKYVKRALY-------------------------LLHLTCG-----PSHPNTAATYINVAMM 264 (1124)
Q Consensus 215 ay~nLA~iy~~lGdyeeAley~ekALe-------------------------i~ek~~G-----~dhp~~a~al~nLA~i 264 (1124)
-|+.+- ....| .+....|.+++. +.++... ......-.+....|.-
T Consensus 377 ~Y~~li--~l~~g--~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~aA~~ 452 (661)
T 2qx5_A 377 EYLVLI--TLNEG--PTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQAARR 452 (661)
T ss_dssp HHHHGG--GGSCC--HHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHH--hccCC--chHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHHHHHH
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCH--------
Q 001206 265 EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDL-------- 336 (1124)
Q Consensus 265 y~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~dh~-------- 336 (1124)
....|++++|+.+|+-| |+|+.|+..+.+++.-.-....-..+
T Consensus 453 ae~~G~~~dAi~LY~La-----------------------------~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~ 503 (661)
T 2qx5_A 453 ADEDGRIYDSILLYQLA-----------------------------EEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNS 503 (661)
T ss_dssp HHHTTCHHHHHHHHHHT-----------------------------TCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCT
T ss_pred HHHCCCHHHHHHHHHHh-----------------------------cCHHHHHHHHHHHHHHHhcccccccccccccccc
Q ss_pred --HHHHHHHHHHHHHHHhHH--------HHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHH--HHcCChHHHHHHHHH
Q 001206 337 --RTQDAAAWLEYFESKAFE--------QQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH--DTKGRNVSTLKRKTY 404 (1124)
Q Consensus 337 --~t~~a~~~La~l~~k~~e--------~aeAl~~~~~~~~~~~a~k~~~~vaell~~Lg~~y--~~qGdyeeAl~~yek 404 (1124)
........+......... ..+.+ .++..|..++ ...|++++|+...++
T Consensus 504 ~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~--------------------~lLl~l~~f~~~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 504 ETNPVLLARRMASIYFDNAGISRQIHVKNKEIC--------------------MLLLNISSIRELYFNKQWQETLSQMEL 563 (661)
T ss_dssp TTCHHHHHHHHHHHHTTCHHHHTTSCHHHHHHH--------------------HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCchhhhhccHHHHHHH--------------------HHHHHHHHHHHHHHcCCHHHHHHHHHh
No 327
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=25.84 E-value=1.1e+02 Score=27.06 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001206 127 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAV 162 (1124)
Q Consensus 127 ~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i 162 (1124)
..|..+...|...-..|+|++|+.+|.++++.+...
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a 46 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLA 46 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 346667777877888999999999999999986553
No 328
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=24.74 E-value=2.8e+02 Score=31.92 Aligned_cols=111 Identities=10% Similarity=0.068 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------hcCCCC-------hhHH---HHHHHHHHHHHHcCCH--HH
Q 001206 170 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINER------ELGLDH-------PDTM---KSYGDLAVFYYRLQHT--EL 231 (1124)
Q Consensus 170 ~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er------~lg~D~-------p~~a---~ay~nLA~iy~~lGdy--ee 231 (1124)
....+..|+..+...|+|.+|-.++..+..+.-+ .+..+. |... ..-...| .....+ +.
T Consensus 10 ~~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g---~~~~~fte~~ 86 (428)
T 2wm9_A 10 RKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVG---MQDVHFNEDV 86 (428)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC------------CCSSSHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccC---CCccccCHHH
Confidence 3457789999999999999998887655443222 111111 1100 0000001 001111 11
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001206 232 ALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 285 (1124)
Q Consensus 232 Aley~ekALei~ek~~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~ 285 (1124)
-.+++++|++.+.+ |........++..|...|....+|.+-..++.+.-.++
T Consensus 87 l~~ll~~ai~~f~k--g~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~~a~~y 138 (428)
T 2wm9_A 87 LMELLEQCADGLWK--AERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAY 138 (428)
T ss_dssp HHHHHHHHHHHHHH--TTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 23355666666554 33444456667777778887777776655555444433
No 329
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.73 E-value=4.2e+02 Score=24.46 Aligned_cols=46 Identities=11% Similarity=0.030 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC-CCHHHHH
Q 001206 295 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP-DDLRTQD 340 (1124)
Q Consensus 295 ~~A~a~~nLA~ly~~lGd~eeAle~lekALei~~k~lG~-dh~~t~~ 340 (1124)
..+..+...|..+...|+|++|+++.++|...+.+...- ....+..
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs~qa~~ 59 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 446667788999999999999999999999887765543 3444333
No 330
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=24.51 E-value=1.4e+02 Score=30.16 Aligned_cols=82 Identities=16% Similarity=0.067 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 001206 233 LKYVKRALYLLHLT-CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 311 (1124)
Q Consensus 233 ley~ekALei~ek~-~G~dhp~~a~al~nLA~iy~~lGdyeeAle~lekALei~~k~lG~d~p~~A~a~~nLA~ly~~lG 311 (1124)
..++++++..+... .-.+++..+.++...+.+. + .+.++|..... +-.|. ..+..|...|.++...|
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~---~p~~if~~L~~---~~IG~---~~AlfY~~wA~~lE~~~ 110 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---N---EPLDMYSYLHN---QGIGV---SLAQFYISWAEEYEARE 110 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---S---CHHHHHHHHHH---TTSST---TBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---C---CHHHHHHHHHH---CCcch---hhHHHHHHHHHHHHHcC
Confidence 34566666544221 1135677777777777664 3 35556654332 22233 35677888899999999
Q ss_pred ChHHHHHHHHHHHHH
Q 001206 312 AYPLSVQHEQTTLQI 326 (1124)
Q Consensus 312 d~eeAle~lekALei 326 (1124)
++.+|...|+.+++.
T Consensus 111 ~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 111 NFRKADAIFQEGIQQ 125 (164)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999998874
No 331
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=23.52 E-value=4.8e+02 Score=30.13 Aligned_cols=118 Identities=10% Similarity=0.006 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH-----------
Q 001206 146 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK----------- 214 (1124)
Q Consensus 146 eeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~----------- 214 (1124)
+.-.-+--+.+..+... .........++.|+..+...++|.+|--.+.....++.-......+.+..
T Consensus 12 d~r~~~~~~l~~~y~~~--~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~ 89 (436)
T 2yin_A 12 DNRMSCTVNLLNFYKDN--NREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQ 89 (436)
T ss_dssp HHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHH
T ss_pred chHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHH
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHH
Q 001206 215 ----SYGDLAVFYYRLQHTELALKYVKRALYLLHLT-CGPSHPNTAATYINVAMMEEG 267 (1124)
Q Consensus 215 ----ay~nLA~iy~~lGdyeeAley~ekALei~ek~-~G~dhp~~a~al~nLA~iy~~ 267 (1124)
.|......+.+-+.|+.|+.+|+..+..++.. . +-...+.++..++.+|..
T Consensus 90 ~ke~L~~~~i~~f~kg~~~E~ai~l~k~L~~~yE~~~~--Dy~~Ls~~~~~~a~~y~~ 145 (436)
T 2yin_A 90 LKETLYETIIGYFDKGKMWEEAISLCKELAEQYEMEIF--DYELLSQNLIQQAKFYES 145 (436)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSC--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
No 332
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=23.03 E-value=4.8e+02 Score=32.01 Aligned_cols=38 Identities=13% Similarity=-0.007 Sum_probs=26.1
Q ss_pred cCChHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHH
Q 001206 123 ACSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLV 160 (1124)
Q Consensus 123 ~~~s~~Ar~Ll~lG~~yl~qG---------dyeeAl~~f~kAL~i~e 160 (1124)
......+-.+|++|.++...+ .+..|..+|++|-.++.
T Consensus 121 ~l~fE~a~vLfNlaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~f~ 167 (704)
T 2xs1_A 121 SLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFL 167 (704)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 344566778888887765432 26788888888877654
No 333
>1olg_A Tumor suppressor P53 (oligomerization domain); anti-oncogene; NMR {Homo sapiens} SCOP: a.53.1.1 PDB: 1olh_A 1sae_A 1saf_A 1sag_A 1sah_A 1sai_A 1saj_A 1sak_A 1sal_A 3sak_A
Probab=21.89 E-value=34 Score=27.02 Aligned_cols=13 Identities=31% Similarity=0.718 Sum_probs=11.2
Q ss_pred ceeEEEEEeeccc
Q 001206 1061 EKTFSILVRGRRN 1073 (1124)
Q Consensus 1061 ~~~~~~~~~~~~~ 1073 (1124)
+-.|.+-||||.|
T Consensus 7 ~E~ftL~VrGRe~ 19 (42)
T 1olg_A 7 GEYFTLQIRGRER 19 (42)
T ss_dssp CCEEEEEEESHHH
T ss_pred CCEEEEEEecHHH
Confidence 4499999999987
No 334
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=21.66 E-value=1.2e+02 Score=31.46 Aligned_cols=62 Identities=11% Similarity=0.015 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhcCCHH
Q 001206 124 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFN 188 (1124)
Q Consensus 124 ~~s~~Ar~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~G~d~p~~A~ay~nLG~ly~~lGdyd 188 (1124)
.....++.+|.+|+.++.+++|.+|.+.|.+|+..+.+. .......++..|--+-..+|++.
T Consensus 9 ~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~---~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 9 STAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS---SQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh---HHHHHHHHHHHHHHHHHHcCCCC
Confidence 345568889999999999999999999999999874211 11223334444444445566643
No 335
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=21.37 E-value=42 Score=23.63 Aligned_cols=16 Identities=44% Similarity=0.412 Sum_probs=13.1
Q ss_pred CccccccCCCCCCCcc
Q 001206 809 NRKLSASAVPFNPSPA 824 (1124)
Q Consensus 809 ~~klsa~a~pfnps~~ 824 (1124)
..||||.||=|=||--
T Consensus 3 ~S~LS~~ApeF~Psgy 18 (26)
T 1jh4_B 3 MSKLSVNAPEFYPSGY 18 (26)
T ss_dssp CCCSSCCCSCCCCTTC
T ss_pred ccccCcCCceeccCcc
Confidence 4589999999998754
No 336
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.98 E-value=1.2e+02 Score=27.09 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001206 131 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 163 (1124)
Q Consensus 131 ~Ll~lG~~yl~qGdyeeAl~~f~kAL~i~e~i~ 163 (1124)
....+|+-|...|+|+.|+.||+.+++...+.+
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l 46 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQMNKYL 46 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999998876543
No 337
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=20.58 E-value=7.3e+02 Score=25.78 Aligned_cols=86 Identities=7% Similarity=0.002 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHh-cCCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 001206 150 TYGTKALAKLVAV-CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 228 (1124)
Q Consensus 150 ~~f~kAL~i~e~i-~G~d~p~~A~ay~nLG~ly~~lGdydeAle~~~KALeI~er~lg~D~p~~a~ay~nLA~iy~~lGd 228 (1124)
.++++++..+... .-.+++....+|..++..+ ..+...++...|.-... +-.|.. .+..|...|..+...|+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~---~~IG~~---~AlfYe~wA~~lE~~g~ 130 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFN---KGIGTK---LSLFYEEFSKLLENAQF 130 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHH---HTSSTT---BHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHH---CCCcHH---HHHHHHHHHHHHHHcCC
Confidence 4566666654321 0124566777777777765 23446677777765433 333443 57778889999999999
Q ss_pred HHHHHHHHHHHHHH
Q 001206 229 TELALKYVKRALYL 242 (1124)
Q Consensus 229 yeeAley~ekALei 242 (1124)
+.+|.+.|+.+++.
T Consensus 131 ~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 131 FLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999873
Done!