BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001207
         (1123 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224126389|ref|XP_002319826.1| predicted protein [Populus trichocarpa]
 gi|222858202|gb|EEE95749.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score = 1248 bits (3230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/833 (72%), Positives = 686/833 (82%), Gaps = 38/833 (4%)

Query: 315  GTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDT 374
            G G N++        KL+I R +L S Y +V+VVDNV+ AK+VV  LTN+Y+HL+HACDT
Sbjct: 16   GIGSNEQVQTKGRPHKLDI-RERLTSIYESVLVVDNVTMAKEVVSKLTNQYRHLIHACDT 74

Query: 375  EVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFED 434
            EVA+IDVK+ETP+DHGE+ C SIY GPEADFG+GKSCIWVD+LDGGGRDLLNEFA FFED
Sbjct: 75   EVARIDVKEETPIDHGEITCLSIYCGPEADFGHGKSCIWVDVLDGGGRDLLNEFALFFED 134

Query: 435  PSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVM 494
            P IKKVWHNYSFDNHV+ENYG  VSGFHADTMHMARLWDSSRR +GGYSLEALTGD+KVM
Sbjct: 135  PDIKKVWHNYSFDNHVIENYGFSVSGFHADTMHMARLWDSSRRLKGGYSLEALTGDQKVM 194

Query: 495  SEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREEREL 554
                  Y++           +GK+SMK IFG++KLKKDGS GK++ IAPVEELQREERE 
Sbjct: 195  RGAGSCYKE----------LIGKVSMKTIFGKKKLKKDGSEGKMTIIAPVEELQREEREP 244

Query: 555  WISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMET 614
            WI YSA D+I+TL+LYKS++ +L +M W LDGK V  KSMFDFYQEYWQPFGEILV+MET
Sbjct: 245  WICYSALDAISTLQLYKSMESELSKMPWNLDGKRVFQKSMFDFYQEYWQPFGEILVRMET 304

Query: 615  EGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPN 674
            EGMLVDR YL+E+EKVA+AEQE A NRFR WA K+CPDAKYMNVGSDTQLRQLLFGG PN
Sbjct: 305  EGMLVDRAYLAEVEKVAKAEQEVAANRFRNWACKYCPDAKYMNVGSDTQLRQLLFGGVPN 364

Query: 675  SKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGG 734
            SKD   +LP ++ FKVPN + VI EGKKTP+K+RNI L SIGVDLP E YTA+GWPSV G
Sbjct: 365  SKDPLLTLPEDKTFKVPNVDKVIEEGKKTPTKYRNIKLCSIGVDLPIETYTASGWPSVSG 424

Query: 735  DALKTLARNISAEYDCVDGAHD----------LDDSGCT--EETEYKGAVASNN------ 776
             ALK LA  IS   D V  A+D          LDDSG    E++  +G+   N       
Sbjct: 425  VALKALAGKIS---DAVSDANDAAGLQLDDAVLDDSGTMTDEDSNSEGSYVENKVESEYV 481

Query: 777  ---KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTE 833
               + F T +E  EAC AI++LCEVCSIDSLISNFILPLQ S++SGK GRVHCSLNINTE
Sbjct: 482  AGLRRFQTPEEGIEACHAIASLCEVCSIDSLISNFILPLQSSDISGKGGRVHCSLNINTE 541

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLSARRPNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLANCKSMLD
Sbjct: 542  TGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLD 601

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKM 950
            AFKAGGDFHSRTAMNMYPHIR A+E  QVLLEW+   GE+KPPVPLLKDAFASERRKAKM
Sbjct: 602  AFKAGGDFHSRTAMNMYPHIREAIEKKQVLLEWYPQPGENKPPVPLLKDAFASERRKAKM 661

Query: 951  LNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLL 1010
            LNFSIAYGKTPVGL+RDWKVSV EAK+TV+LWY ER+EVL WQ+ARKKE+R +  V+TLL
Sbjct: 662  LNFSIAYGKTPVGLSRDWKVSVAEAKETVNLWYKERKEVLKWQQARKKEARENGRVYTLL 721

Query: 1011 GRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQ 1070
            GRAR FP++   + S R H+ERAAINTPVQGSAADVAMCAMLEISKN RL+ELGWKLLLQ
Sbjct: 722  GRARVFPSLTDASSSLRGHVERAAINTPVQGSAADVAMCAMLEISKNTRLQELGWKLLLQ 781

Query: 1071 VHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            VHDEVILEGP+ESAEVAKAIVV CMSKPF GKN L VDL+VD+KCAQNWY+AK
Sbjct: 782  VHDEVILEGPTESAEVAKAIVVGCMSKPFGGKNFLNVDLAVDSKCAQNWYAAK 834


>gi|224117482|ref|XP_002317586.1| predicted protein [Populus trichocarpa]
 gi|222860651|gb|EEE98198.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score = 1247 bits (3227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/830 (73%), Positives = 683/830 (82%), Gaps = 32/830 (3%)

Query: 315  GTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDT 374
            G+G   KA  N    K  I   +L + Y  V+VVDN S A++VV  LTN+Y+HL+HACDT
Sbjct: 16   GSGSTDKAQTNGRPHKPGI-HERLTNIYERVLVVDNASMAREVVSKLTNQYRHLIHACDT 74

Query: 375  EVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFED 434
            EVAKI+VK+ETP+DHGE+ CFSIYSGPEADFGNGKSCIWVD+LDGGGRDLL+EFAPFFE 
Sbjct: 75   EVAKIEVKEETPIDHGEITCFSIYSGPEADFGNGKSCIWVDVLDGGGRDLLHEFAPFFES 134

Query: 435  PSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVM 494
            P IKKVWHNYSFDNHV+ENYG+ VSGFHADTMHMARLWDSSRR  GGYSLEALTGD+KVM
Sbjct: 135  PDIKKVWHNYSFDNHVIENYGISVSGFHADTMHMARLWDSSRRINGGYSLEALTGDQKVM 194

Query: 495  SEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREEREL 554
               +  Y++           +GK+SMK+IFG++K+KKDGS GK++TIAPVEELQRE RE 
Sbjct: 195  RGAEPCYKE----------LIGKVSMKNIFGKKKVKKDGSEGKLTTIAPVEELQREAREP 244

Query: 555  WISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMET 614
            WI YSA D+I+TL+LYKSL+ +L +M W +DGKPV  KSMFDFY EYWQPFGEILV+MET
Sbjct: 245  WICYSALDAISTLQLYKSLESQLSKMPWNMDGKPVLKKSMFDFYLEYWQPFGEILVRMET 304

Query: 615  EGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPN 674
            EGMLVDR YL+  EKVA+AEQE A +RFRKWAS++CPDAKYMNVGSDTQLRQLLFGG  N
Sbjct: 305  EGMLVDRAYLAVTEKVAKAEQEVAASRFRKWASRYCPDAKYMNVGSDTQLRQLLFGGICN 364

Query: 675  SKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGG 734
            SKD   +LP  + FKVPN + VI EGKKTP+KF +I L SI VDLP E YTA+GWPSV G
Sbjct: 365  SKDPLVTLPEVKTFKVPNVDKVIEEGKKTPTKFCDIKLCSIRVDLPVETYTASGWPSVSG 424

Query: 735  DALKTLARNISAEYDCVDGAHD------LDDSGCTE------------ETEYKGAVASNN 776
            DALKTLAR IS+EY   D A         DDS                E E +     N 
Sbjct: 425  DALKTLARKISSEYVVNDAAGSQLDDVVFDDSETMTDEDLESKELSVVENEDESGHVGNL 484

Query: 777  KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGR 836
            + F T +E  EAC AIS+LCE+CSIDSLISNFILPLQ SN+SGK+GRVHCSLNINTETGR
Sbjct: 485  RRFQTPEEGIEACHAISSLCELCSIDSLISNFILPLQSSNLSGKSGRVHCSLNINTETGR 544

Query: 837  LSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFK 896
            LSARRPNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELR+LAHLANCKSMLDAFK
Sbjct: 545  LSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRVLAHLANCKSMLDAFK 604

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNF 953
            AGGDFHSRTA+NMYPHIR A+E  +VLLEW+   GEDKPPVPLLKDAFASERRKAKMLNF
Sbjct: 605  AGGDFHSRTAVNMYPHIREAIEKKRVLLEWYPQPGEDKPPVPLLKDAFASERRKAKMLNF 664

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
            SIAYGKTPVGL+RDWKVSV EAK+TV+LWY ER+EVL WQ+ARKKE+R D  VHTLLGRA
Sbjct: 665  SIAYGKTPVGLSRDWKVSVAEAKETVNLWYKERKEVLKWQQARKKEAREDGRVHTLLGRA 724

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHD 1073
            R FP++   + S R H+ERAAINTPVQGSAADVAMCAMLEISKN RLKELGWKLLLQVHD
Sbjct: 725  RVFPSLTDASSSLRGHVERAAINTPVQGSAADVAMCAMLEISKNNRLKELGWKLLLQVHD 784

Query: 1074 EVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            EVILEGP+ESAEVAKAIVV+CMSKPF GKN L+VDL+VDAKCAQNWYSAK
Sbjct: 785  EVILEGPTESAEVAKAIVVDCMSKPFGGKNFLKVDLAVDAKCAQNWYSAK 834


>gi|356499384|ref|XP_003518521.1| PREDICTED: uncharacterized protein LOC100797016 [Glycine max]
          Length = 1077

 Score = 1234 bits (3192), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/803 (74%), Positives = 674/803 (83%), Gaps = 22/803 (2%)

Query: 334  LRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVI 393
            LR +L S Y +++VVDN+  A++V  MLT KY+HL++ACDTEVAKIDVKQETPVDHGE+ 
Sbjct: 284  LRDRLCSIYDDILVVDNIPLAEEVSKMLTTKYRHLIYACDTEVAKIDVKQETPVDHGEIT 343

Query: 394  CFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN 453
            CFSIY GPEADFG GKSCIWVD+LDGGG+++L +FA FF D SIKKVWHNYSFD HV+EN
Sbjct: 344  CFSIYCGPEADFGGGKSCIWVDVLDGGGKEILEKFAEFFSDSSIKKVWHNYSFDCHVIEN 403

Query: 454  YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEG 513
            YG KVSGFHADTMHMARLWDSSR  +GGYSLE LTGDR+VMS  +  ++KD++       
Sbjct: 404  YGFKVSGFHADTMHMARLWDSSRHLDGGYSLEGLTGDRRVMSRAQLNHEKDLT------- 456

Query: 514  FMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
              GK+SMK IF ++KLKKDGS GK S IAPVEELQREER  WI YSA D+ +TLKLY+SL
Sbjct: 457  --GKVSMKTIFSKKKLKKDGSEGKTSIIAPVEELQREERIPWICYSALDASSTLKLYESL 514

Query: 574  KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARA 633
            K  L +M WK DG PV GK+M+DFY EYW+PFGE+LV ME+EGMLVDR YL  IEKVA+A
Sbjct: 515  KSHLSDMPWKFDGLPVYGKTMYDFYNEYWRPFGELLVMMESEGMLVDRAYLESIEKVAKA 574

Query: 634  EQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNT 693
            EQE AVNRFRKWA+++CPDA+YMNVGSD+QLRQLLFGG  N KD S++LP ERIFK+PN 
Sbjct: 575  EQEVAVNRFRKWATRYCPDAQYMNVGSDSQLRQLLFGGIVNRKDSSQTLPTERIFKIPNV 634

Query: 694  EGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDG 753
            + VI EGKK P KFR+I L S+G +L TEMYTATGWPSV GDALK LA +ISA+YD  D 
Sbjct: 635  DNVIEEGKKAPKKFRDIKLTSLGYNLETEMYTATGWPSVSGDALKALAGSISADYDFFDE 694

Query: 754  AHDLDDSGCTEETEYKGAVASNN----------KIFATEQEAREACDAISALCEVCSIDS 803
              +LDD    +E   +  VAS              F TE+E REAC AI+ALC+VCSI+S
Sbjct: 695  DCNLDDLDDEDENPSQSQVASVKIDKSAYGTAYAAFPTEEEGREACHAIAALCQVCSINS 754

Query: 804  LISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            LISNFILPLQG N+SGK+ RVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA
Sbjct: 755  LISNFILPLQGHNISGKDLRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 814

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
             PGNSLIVADYGQLELRILAHLA+CKSML+AF+AGGDFHSRTAMNMYPHIR AVE  +VL
Sbjct: 815  APGNSLIVADYGQLELRILAHLADCKSMLEAFEAGGDFHSRTAMNMYPHIREAVEKKEVL 874

Query: 924  LEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVD 980
            LEWH   GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGL++DWKVSV+EAKKTVD
Sbjct: 875  LEWHPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSVKEAKKTVD 934

Query: 981  LWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQ 1040
            LWYN+R+EVL WQE RKKE+R+ + V+TLLGRARRFP +      Q+ HIERAAINTPVQ
Sbjct: 935  LWYNDRKEVLQWQEERKKEARVLHCVYTLLGRARRFPLMAQANTYQKGHIERAAINTPVQ 994

Query: 1041 GSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFN 1100
            GSAADVAMCAML+ISKN RLKELGWKLLLQVHDEVILEGP+ESAEVAK+IVVECMSKPFN
Sbjct: 995  GSAADVAMCAMLQISKNKRLKELGWKLLLQVHDEVILEGPTESAEVAKSIVVECMSKPFN 1054

Query: 1101 GKNNLRVDLSVDAKCAQNWYSAK 1123
            GKN L+VDLSVDAKCAQNWYS K
Sbjct: 1055 GKNILKVDLSVDAKCAQNWYSGK 1077


>gi|255563979|ref|XP_002522989.1| DNA polymerase I, putative [Ricinus communis]
 gi|223537801|gb|EEF39419.1| DNA polymerase I, putative [Ricinus communis]
          Length = 963

 Score = 1229 bits (3180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/827 (72%), Positives = 680/827 (82%), Gaps = 33/827 (3%)

Query: 315  GTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDT 374
              G  +K S  + + +   ++ +L S +  ++VV+++S A  +V  LTN+Y+HL+HACDT
Sbjct: 152  AVGDAEKFSNTKEASRHPDVKRRLTSIFGKILVVNDMSMADGIVKKLTNEYRHLIHACDT 211

Query: 375  EVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFED 434
            EVAKIDVKQETPV HGE+ICFSIYSGPEADFGNG SCIWVD+LDGGGRDLL +F PFFE+
Sbjct: 212  EVAKIDVKQETPVGHGEIICFSIYSGPEADFGNGTSCIWVDVLDGGGRDLLVKFKPFFEN 271

Query: 435  PSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVM 494
            P IKKVWHNYSFD HV++NY + V GFHADTMHMARLW+SSRRTEGGYSLEALTGD++VM
Sbjct: 272  PEIKKVWHNYSFDKHVIQNYEVPVCGFHADTMHMARLWNSSRRTEGGYSLEALTGDKRVM 331

Query: 495  SEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREEREL 554
            S  +  +          EG +GK+SMK IFG+ KLKKDGS GK+ T+APVEELQREERE 
Sbjct: 332  SGAQSCF----------EGLIGKVSMKTIFGKNKLKKDGSEGKMITVAPVEELQREEREP 381

Query: 555  WISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMET 614
            WI YSA D+I+T +LY+SLK+KL  M W L+GKPV GKSM DFY+EYW+PFGE+LV+MET
Sbjct: 382  WICYSALDAISTWQLYESLKRKLFHMPWNLNGKPV-GKSMLDFYKEYWRPFGELLVRMET 440

Query: 615  EGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPN 674
            EG+LVDR YL+EIEKVA+ EQE AVNRFR WA K+CPDAKYMNVGSDTQLRQL FGG  N
Sbjct: 441  EGILVDRAYLAEIEKVAKVEQEIAVNRFRNWACKYCPDAKYMNVGSDTQLRQLFFGGIAN 500

Query: 675  SKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGG 734
            SKD    LP+E+  KVPN + VI EGKK P+KF +ITL  IG + P EMYTATGWPSV G
Sbjct: 501  SKDPDSILPVEKKIKVPNVDKVIEEGKKAPTKFCSITLHKIG-NFPAEMYTATGWPSVSG 559

Query: 735  DALKTLARNISAEYDCVDGAHDLDDSGC----TEETEYK----------GAVASNNKIFA 780
            DALKTLA  +SAEYD VD   D+ + GC    TE +E +           A  +  K F 
Sbjct: 560  DALKTLAGKVSAEYDFVD---DIVEDGCELETTEGSETQVPSVLKDVDTSAYGTALKAFP 616

Query: 781  TEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSAR 840
            + +E  EAC AI++LCEVCSIDSLISNFILPLQGSNVSGK GRVHCSLNINTETGRLSAR
Sbjct: 617  SLEEGIEACHAIASLCEVCSIDSLISNFILPLQGSNVSGKRGRVHCSLNINTETGRLSAR 676

Query: 841  RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
            RPNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLANCKSML+AFKAGGD
Sbjct: 677  RPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLEAFKAGGD 736

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            FHSRTAMNMYPHI  AV+ G+VLLEW    GE+KPPVPLLKDAF SERRKAKMLNFSIAY
Sbjct: 737  FHSRTAMNMYPHIHEAVDKGEVLLEWDPQPGEEKPPVPLLKDAFGSERRKAKMLNFSIAY 796

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            GKTPVGLARDWKVS+EEAK+TV+LWY ERQEVL WQEARKKE+R D  VHTLLGRAR FP
Sbjct: 797  GKTPVGLARDWKVSIEEAKETVNLWYRERQEVLKWQEARKKEAREDGRVHTLLGRARVFP 856

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVIL 1077
            +I   + +Q+ HIERAAINTPVQGSAADVAMCAML+IS+N RLKELGWKLLLQ+HDEVIL
Sbjct: 857  SISHASNAQKRHIERAAINTPVQGSAADVAMCAMLQISRNKRLKELGWKLLLQIHDEVIL 916

Query: 1078 EGPSESAEVAKAIVVECMSKP-FNGKNNLRVDLSVDAKCAQNWYSAK 1123
            EGP+ESA VAK IV+ECMSKP FNG N L+VDLSVDAKCA+NWYSAK
Sbjct: 917  EGPTESAVVAKDIVIECMSKPFFNGVNILKVDLSVDAKCAENWYSAK 963


>gi|225461738|ref|XP_002283388.1| PREDICTED: uncharacterized protein LOC100257153 [Vitis vinifera]
          Length = 1034

 Score = 1229 bits (3180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/806 (74%), Positives = 667/806 (82%), Gaps = 28/806 (3%)

Query: 335  RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
            R KL+  Y  V++VD++  AKK+V  LT +YKHL+HACDTEVA IDVK+ETPVDHGE+IC
Sbjct: 240  RRKLSKIYEKVLIVDDIYVAKKIVRKLTTQYKHLIHACDTEVANIDVKRETPVDHGEIIC 299

Query: 395  FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY 454
            FSIYSGPEADFGNGKSCIWVD+LDGGGRDLL EFAPFFEDPSI+KVWHNYSFDNHV+ENY
Sbjct: 300  FSIYSGPEADFGNGKSCIWVDVLDGGGRDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENY 359

Query: 455  GLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGF 514
             LKVSGFHADTMHMARLWDSSRR  GGYSLEALT D KVMS         MS G   E  
Sbjct: 360  DLKVSGFHADTMHMARLWDSSRRAVGGYSLEALTRDSKVMS------GAHMSNG---EEL 410

Query: 515  MGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLK 574
            +GK+SMK IFG++KLKKDG+ GKI TIAPVE LQRE+R+ WISYSA DS++TLKLY+S+K
Sbjct: 411  IGKVSMKTIFGKKKLKKDGTEGKIITIAPVEVLQREDRKPWISYSALDSMSTLKLYESMK 470

Query: 575  KKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAE 634
             KLL+  W LDG       MFDFYQ+YW+PFGE+LV+METEGMLVDR YLS++EKVA+AE
Sbjct: 471  NKLLDKEWLLDG--ARKGCMFDFYQKYWRPFGELLVQMETEGMLVDRAYLSKVEKVAKAE 528

Query: 635  QEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTE 694
            ++ A NRFR WASKHCPDAKYMNVGSDTQLRQLLFGG  N KD +E LP+E+ FK+PN +
Sbjct: 529  EQVAANRFRNWASKHCPDAKYMNVGSDTQLRQLLFGGVANRKDPNECLPMEKTFKIPNVD 588

Query: 695  GVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGA 754
             VI EGKK P+KFRNITL S  V++P EM TA+GWPSV GDALKTLA  +SA++D +D A
Sbjct: 589  KVIEEGKKAPTKFRNITLSSFDVEIPIEMCTASGWPSVSGDALKTLAGKVSADFDFIDDA 648

Query: 755  H-DLDDSGCTEETEYKG-------------AVASNNKIFATEQEAREACDAISALCEVCS 800
              D + +   +  E  G             A  +    F   QE R+AC AI+ALCEVCS
Sbjct: 649  ECDFETTAIEKIDEVPGTRGPKESEDTDISAYGTAYAAFGEGQEGRKACHAIAALCEVCS 708

Query: 801  IDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA 860
            I+SLISNFILPLQ   +SGKNGR+HCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA
Sbjct: 709  INSLISNFILPLQDGEISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA 768

Query: 861  FIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETG 920
            FIA PGNSLIVADYGQLELRILAHLANCKSML+AFKAGGDFHSRTAMNMYPHIR AVE  
Sbjct: 769  FIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPHIREAVEKR 828

Query: 921  QVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKK 977
            +VLLEWH   GEDKPPVPLLKDAF SERRKAKMLNFSIAYGKT VGLARDWKVSV EA++
Sbjct: 829  EVLLEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARDWKVSVREARE 888

Query: 978  TVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINT 1037
            TV+ WY ER+EVL WQE RKKE+    +V TLLGRAR FP++   T SQR HIERAAINT
Sbjct: 889  TVERWYKERKEVLAWQEKRKKEATTLKYVCTLLGRARSFPSVHHATASQRGHIERAAINT 948

Query: 1038 PVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSK 1097
            PVQGSAADVAMCAMLEIS+NARLKELGWKLLLQVHDEVILEGP+ESAEVAKAIVVECM K
Sbjct: 949  PVQGSAADVAMCAMLEISRNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVECMEK 1008

Query: 1098 PFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            PF+GKN L VDL+VDAKCAQNWYSAK
Sbjct: 1009 PFDGKNILSVDLAVDAKCAQNWYSAK 1034


>gi|302142870|emb|CBI20165.3| unnamed protein product [Vitis vinifera]
          Length = 1118

 Score = 1228 bits (3176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/806 (74%), Positives = 667/806 (82%), Gaps = 28/806 (3%)

Query: 335  RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
            R KL+  Y  V++VD++  AKK+V  LT +YKHL+HACDTEVA IDVK+ETPVDHGE+IC
Sbjct: 324  RRKLSKIYEKVLIVDDIYVAKKIVRKLTTQYKHLIHACDTEVANIDVKRETPVDHGEIIC 383

Query: 395  FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY 454
            FSIYSGPEADFGNGKSCIWVD+LDGGGRDLL EFAPFFEDPSI+KVWHNYSFDNHV+ENY
Sbjct: 384  FSIYSGPEADFGNGKSCIWVDVLDGGGRDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENY 443

Query: 455  GLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGF 514
             LKVSGFHADTMHMARLWDSSRR  GGYSLEALT D KVMS         MS G   E  
Sbjct: 444  DLKVSGFHADTMHMARLWDSSRRAVGGYSLEALTRDSKVMS------GAHMSNG---EEL 494

Query: 515  MGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLK 574
            +GK+SMK IFG++KLKKDG+ GKI TIAPVE LQRE+R+ WISYSA DS++TLKLY+S+K
Sbjct: 495  IGKVSMKTIFGKKKLKKDGTEGKIITIAPVEVLQREDRKPWISYSALDSMSTLKLYESMK 554

Query: 575  KKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAE 634
             KLL+  W LDG       MFDFYQ+YW+PFGE+LV+METEGMLVDR YLS++EKVA+AE
Sbjct: 555  NKLLDKEWLLDG--ARKGCMFDFYQKYWRPFGELLVQMETEGMLVDRAYLSKVEKVAKAE 612

Query: 635  QEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTE 694
            ++ A NRFR WASKHCPDAKYMNVGSDTQLRQLLFGG  N KD +E LP+E+ FK+PN +
Sbjct: 613  EQVAANRFRNWASKHCPDAKYMNVGSDTQLRQLLFGGVANRKDPNECLPMEKTFKIPNVD 672

Query: 695  GVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGA 754
             VI EGKK P+KFRNITL S  V++P EM TA+GWPSV GDALKTLA  +SA++D +D A
Sbjct: 673  KVIEEGKKAPTKFRNITLSSFDVEIPIEMCTASGWPSVSGDALKTLAGKVSADFDFIDDA 732

Query: 755  H-DLDDSGCTEETEYKG-------------AVASNNKIFATEQEAREACDAISALCEVCS 800
              D + +   +  E  G             A  +    F   QE R+AC AI+ALCEVCS
Sbjct: 733  ECDFETTAIEKIDEVPGTRGPKESEDTDISAYGTAYAAFGEGQEGRKACHAIAALCEVCS 792

Query: 801  IDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA 860
            I+SLISNFILPLQ   +SGKNGR+HCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA
Sbjct: 793  INSLISNFILPLQDGEISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA 852

Query: 861  FIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETG 920
            FIA PGNSLIVADYGQLELRILAHLANCKSML+AFKAGGDFHSRTAMNMYPHIR AVE  
Sbjct: 853  FIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPHIREAVEKR 912

Query: 921  QVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKK 977
            +VLLEWH   GEDKPPVPLLKDAF SERRKAKMLNFSIAYGKT VGLARDWKVSV EA++
Sbjct: 913  EVLLEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARDWKVSVREARE 972

Query: 978  TVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINT 1037
            TV+ WY ER+EVL WQE RKKE+    +V TLLGRAR FP++   T SQR HIERAAINT
Sbjct: 973  TVERWYKERKEVLAWQEKRKKEATTLKYVCTLLGRARSFPSVHHATASQRGHIERAAINT 1032

Query: 1038 PVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSK 1097
            PVQGSAADVAMCAMLEIS+NARLKELGWKLLLQVHDEVILEGP+ESAEVAKAIVVECM K
Sbjct: 1033 PVQGSAADVAMCAMLEISRNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVECMEK 1092

Query: 1098 PFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            PF+GKN L VDL+VDAKCAQNWYSAK
Sbjct: 1093 PFDGKNILSVDLAVDAKCAQNWYSAK 1118


>gi|449513483|ref|XP_004164337.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101212518 [Cucumis
            sativus]
          Length = 1126

 Score = 1228 bits (3176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/893 (68%), Positives = 707/893 (79%), Gaps = 34/893 (3%)

Query: 251  LRYEKEVAEYQERKGATVLTVPNLS-DFRNSEIECFEDGSSYTPPPKLVSFKRSNQKNPK 309
            ++ +K+    Q  KG+ V  VP++S + RN      +  S     PK + F  +      
Sbjct: 248  MQSKKKCTSSQIGKGSIVPLVPDVSLNGRNQSTSLGKVNSV----PKTLKFTEAANGMEG 303

Query: 310  NDAAEG------TGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTN 363
            + A E        G   K  E   +     ++ +L   Y +V+VVD+VSAAK+VV MLT 
Sbjct: 304  SVAVEKMSKRIINGSGTKVMEAPATACKPDIKERLIGVYDSVLVVDSVSAAKEVVSMLTT 363

Query: 364  KYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRD 423
            KY++LVHACDTEVAKIDVKQETP+DHGEVICFSIYSGP ADFGNGKSCIWVD+LDGGG++
Sbjct: 364  KYRNLVHACDTEVAKIDVKQETPIDHGEVICFSIYSGPGADFGNGKSCIWVDVLDGGGKE 423

Query: 424  LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
            +L +FAPFFEDP I+KVWHNYSFDNH++ENYG+K+SGFHADTMHMARLWDSSRR  GGYS
Sbjct: 424  ILLQFAPFFEDPLIRKVWHNYSFDNHIIENYGIKLSGFHADTMHMARLWDSSRRVSGGYS 483

Query: 484  LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
            LEAL+ DRKVMS+ +   +K++         +GK+SMK IFGR+K K DGS GK+  I P
Sbjct: 484  LEALSSDRKVMSDAELGEEKEL---------IGKVSMKTIFGRKKKKMDGSEGKLVVIPP 534

Query: 544  VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            VEELQREER+ W+SYSA DSI TLKLY+SLK KL  M W+ +G+ +PG++M +FY+EYW+
Sbjct: 535  VEELQREERKPWVSYSALDSICTLKLYESLKNKLSHMPWERNGEAIPGQTMINFYEEYWK 594

Query: 604  PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
            PFGE+LVKMETEGMLVDR YL+EIEK+A  EQE A N+FR WASK+C DAKYMNVGSD Q
Sbjct: 595  PFGELLVKMETEGMLVDRSYLAEIEKLAIVEQEVAANKFRNWASKYCSDAKYMNVGSDAQ 654

Query: 664  LRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSI-GVDLPTE 722
            +RQLLFGG  NSK+  E LP ER FKVPN+E VI EGKK P KFRNITL  I      TE
Sbjct: 655  VRQLLFGGACNSKNPVEFLPTERTFKVPNSEKVIQEGKKLPXKFRNITLHCIKDKAFSTE 714

Query: 723  MYTATGWPSVGGDALKTLARNISAEYD------CVDGAHDLDDSGCTEETEYKGAVASNN 776
            +YTA+GWPSVG DALK LA  +SAE+D      C D   D D      E E KG ++ N+
Sbjct: 715  IYTASGWPSVGVDALKILAGKVSAEFDDIANDLCFDNEVDKDFEMMPHE-ESKGHLSDND 773

Query: 777  ---KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTE 833
               K F + +E++EAC AI+ALCEVCSID+LISNFILPLQGSN+SGKNGRVHCSLNINTE
Sbjct: 774  TALKEFKSLEESKEACHAIAALCEVCSIDTLISNFILPLQGSNISGKNGRVHCSLNINTE 833

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLSARRPNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLANCKSML+
Sbjct: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLE 893

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKM 950
            AFKAGGDFHSRTAMNMYPHI+ AVE G VLLEW    G++KPPVPLLKDAFASERRKAKM
Sbjct: 894  AFKAGGDFHSRTAMNMYPHIKKAVEEGSVLLEWDPQPGQEKPPVPLLKDAFASERRKAKM 953

Query: 951  LNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLL 1010
            LNFSIAYGKTPVGL+RDWKVS+EEAKKTV LWYNER+EV  WQ+ R  E+   + V TLL
Sbjct: 954  LNFSIAYGKTPVGLSRDWKVSLEEAKKTVKLWYNERKEVREWQDLRMAEAAESSCVRTLL 1013

Query: 1011 GRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQ 1070
            GRAR+FP++K  TR Q+ HIERAAINTPVQGSAADVAMCAMLEISKN+RL+ELGW+LLLQ
Sbjct: 1014 GRARQFPSMKYATRFQKGHIERAAINTPVQGSAADVAMCAMLEISKNSRLRELGWRLLLQ 1073

Query: 1071 VHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            VHDEVILEGP+ESAEVAKAIVVECMSKPFNGKN L+VDL VDAKC QNWYSAK
Sbjct: 1074 VHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILKVDLVVDAKCEQNWYSAK 1126


>gi|356553303|ref|XP_003544996.1| PREDICTED: uncharacterized protein LOC100807239 [Glycine max]
          Length = 847

 Score = 1225 bits (3170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 589/802 (73%), Positives = 668/802 (83%), Gaps = 21/802 (2%)

Query: 334  LRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVI 393
            LR +L S Y +++VVDN+  A++V  MLT KY+HL++ACDTEVAKIDVKQETPVDHGE+ 
Sbjct: 55   LRDRLCSIYDDILVVDNIHLAEEVAKMLTTKYRHLIYACDTEVAKIDVKQETPVDHGEIT 114

Query: 394  CFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN 453
            CFSIY GPEADFG GKSCIWVD+LDGGG+++L +FA FF D SIKKVWHNYSFD HV+EN
Sbjct: 115  CFSIYCGPEADFGGGKSCIWVDVLDGGGKEILEKFAEFFSDSSIKKVWHNYSFDCHVIEN 174

Query: 454  YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEG 513
            YG KVSGFHADTMHMARLWDSSR  +GGYSLE LTGDR+VMS  +  ++KD+        
Sbjct: 175  YGFKVSGFHADTMHMARLWDSSRHLDGGYSLEGLTGDRRVMSRAQLNHEKDL-------- 226

Query: 514  FMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
             +GK+SMK IF ++KLKKDGS GK S IAPVEELQR+ER  WI YSA D+ +TLKLY+SL
Sbjct: 227  -IGKVSMKTIFSKKKLKKDGSEGKTSIIAPVEELQRDERIPWICYSALDASSTLKLYESL 285

Query: 574  KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARA 633
            K  L +M WK DG PV GK+M+DFY EYW PFGE+LV ME+EGMLVDR YL  IEKVA+A
Sbjct: 286  KSHLSDMPWKFDGVPVYGKTMYDFYNEYWCPFGELLVMMESEGMLVDRAYLESIEKVAKA 345

Query: 634  EQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNT 693
            EQE AVNRFRKWA+++CPDA+YMNVGSD+QLRQLLFGG  N KD +++LP ERIFK+PN 
Sbjct: 346  EQEVAVNRFRKWATRYCPDAQYMNVGSDSQLRQLLFGGIVNRKDSNQTLPTERIFKIPNV 405

Query: 694  EGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCV-- 751
              VI EGKK P +F +I L S+G +L TEMYTATGWPSV GDALK LA +ISA+YD    
Sbjct: 406  NNVIEEGKKAPKRFCDIKLTSLGYNLETEMYTATGWPSVSGDALKALAGSISADYDFFDE 465

Query: 752  DGAHDLDD-------SGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSL 804
            D   DLDD       S        K A  +    F TE+E REAC AI+ALC+VCSI+SL
Sbjct: 466  DCNLDLDDEDENPSQSQVAPVKIDKSAYGTAYAAFPTEEEGREACHAIAALCQVCSINSL 525

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAV 864
            ISNFILPLQG N+SGK+ RVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 
Sbjct: 526  ISNFILPLQGHNISGKDLRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAA 585

Query: 865  PGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLL 924
            P NSLIVADYGQLELRILAHLA+CKSML+AF+AGGDFHSRTAMNMYPHIR AVE  +VLL
Sbjct: 586  PRNSLIVADYGQLELRILAHLADCKSMLEAFEAGGDFHSRTAMNMYPHIREAVEKKEVLL 645

Query: 925  EWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDL 981
            EWH   GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGL++DWKVSV+EAKKTVDL
Sbjct: 646  EWHPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSVKEAKKTVDL 705

Query: 982  WYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQG 1041
            WYN+R+EVL WQE RKKE+R+ + V+TLLGRARRFP +      Q+ HIERAAINTPVQG
Sbjct: 706  WYNDRKEVLQWQEERKKEARVLHCVYTLLGRARRFPLMAQANTYQKGHIERAAINTPVQG 765

Query: 1042 SAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNG 1101
            SAADVAMCAML+ISKN RLKELGWKLLLQVHDEVILEGP+ESAEVAK+IV+ECMSKPFNG
Sbjct: 766  SAADVAMCAMLQISKNKRLKELGWKLLLQVHDEVILEGPTESAEVAKSIVIECMSKPFNG 825

Query: 1102 KNNLRVDLSVDAKCAQNWYSAK 1123
            KN L+VDLSVDAKCAQNWYS K
Sbjct: 826  KNILKVDLSVDAKCAQNWYSGK 847


>gi|449470431|ref|XP_004152920.1| PREDICTED: uncharacterized protein LOC101212518 [Cucumis sativus]
          Length = 1136

 Score = 1221 bits (3160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/903 (67%), Positives = 708/903 (78%), Gaps = 44/903 (4%)

Query: 251  LRYEKEVAEYQERKGATVLTVPNLS-DFRNSEIECFEDGSSYTPPPKLVSFKRSNQKNPK 309
            ++ +K+    Q  KG+ V  VP++S + RN      +  S     PK + F  +      
Sbjct: 248  MQSKKKCTSSQIGKGSIVPLVPDVSLNGRNQSTSLGKVNSV----PKTLKFTEAANGMEG 303

Query: 310  NDAAEG------TGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTN 363
            + A E        G   K  E   +     ++ +L   Y +V+VVD+VSAAK+VV MLT 
Sbjct: 304  SVAVEKMSKRIINGSGTKVMEAPATACKPDIKERLIGVYDSVLVVDSVSAAKEVVSMLTT 363

Query: 364  KYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVD-------- 415
            KY++LVHACDTEVAKIDVKQETP+DHGEVICFSIYSGP ADFGNGKSCIWVD        
Sbjct: 364  KYRNLVHACDTEVAKIDVKQETPIDHGEVICFSIYSGPGADFGNGKSCIWVDVLDGGGKE 423

Query: 416  --LLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
              LLDGGG+++L +FAPFFEDP I+KVWHNYSFDNH++ENYG+K+SGFHADTMHMARLWD
Sbjct: 424  ILLLDGGGKEILLQFAPFFEDPLIRKVWHNYSFDNHIIENYGIKLSGFHADTMHMARLWD 483

Query: 474  SSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDG 533
            SSRR  GGYSLEAL+ DRKVMS+ +   +K++         +GK+SMK IFGR+K K DG
Sbjct: 484  SSRRVSGGYSLEALSSDRKVMSDAELGEEKEL---------IGKVSMKTIFGRKKKKMDG 534

Query: 534  SAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKS 593
            S GK+  I PVEELQREER+ W+SYSA DSI TLKLY+SLK KL  M W+ +G+ +PG++
Sbjct: 535  SEGKLVVIPPVEELQREERKPWVSYSALDSICTLKLYESLKNKLSHMPWERNGEAIPGQT 594

Query: 594  MFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDA 653
            M +FY+EYW+PFGE+LVKMETEGMLVDR YL+EIEK+A  EQE A N+FR WASK+C DA
Sbjct: 595  MINFYEEYWKPFGELLVKMETEGMLVDRSYLAEIEKLAIVEQEVAANKFRNWASKYCSDA 654

Query: 654  KYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLR 713
            KYMNVGSD Q+RQLLFGG  NSK+  E LP ER FKVPN+E VI EGKKT SKFRNITL 
Sbjct: 655  KYMNVGSDAQVRQLLFGGACNSKNPVEFLPTERTFKVPNSEKVIQEGKKTASKFRNITLH 714

Query: 714  SI-GVDLPTEMYTATGWPSVGGDALKTLARNISAEYD------CVDGAHDLDDSGCTEET 766
             I      TE+YTA+GWPSVG DALK LA  +SAE+D      C D   D D      E 
Sbjct: 715  CIKDKAFSTEIYTASGWPSVGVDALKILAGKVSAEFDDIANDLCFDNEVDKDFEMMPHE- 773

Query: 767  EYKGAVASNN---KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGR 823
            E KG ++ N+   K F + +E++EAC AI+ALCEVCSID+LISNFILPLQGSN+SGKNGR
Sbjct: 774  ESKGHLSDNDTALKEFKSLEESKEACHAIAALCEVCSIDTLISNFILPLQGSNISGKNGR 833

Query: 824  VHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILA 883
            VHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILA
Sbjct: 834  VHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILA 893

Query: 884  HLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDA 940
            HLANCKSML+AFKAGGDFHSRTAMNMYPHI+ AVE G VLLEW    G++KPPVPLLKDA
Sbjct: 894  HLANCKSMLEAFKAGGDFHSRTAMNMYPHIKKAVEEGSVLLEWDPQPGQEKPPVPLLKDA 953

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
            FASERRKAKMLNFSIAYGKTPVGL+RDWKVS+EEAKKTV LWYNER+EV  WQ+ R  E+
Sbjct: 954  FASERRKAKMLNFSIAYGKTPVGLSRDWKVSLEEAKKTVKLWYNERKEVREWQDLRMAEA 1013

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
               + V TLLGRAR+FP++K  TR Q+ HIERAAINTPVQGSAADVAMCAMLEISKN+RL
Sbjct: 1014 AESSCVRTLLGRARQFPSMKYATRFQKGHIERAAINTPVQGSAADVAMCAMLEISKNSRL 1073

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
            +ELGW+LLLQVHDEVILEGP+ESAEVAKAIVVECMSKPFNGKN L+VDL VDAKC QNWY
Sbjct: 1074 RELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILKVDLVVDAKCEQNWY 1133

Query: 1121 SAK 1123
            SAK
Sbjct: 1134 SAK 1136


>gi|357494395|ref|XP_003617486.1| DNA polymerase [Medicago truncatula]
 gi|355518821|gb|AET00445.1| DNA polymerase [Medicago truncatula]
          Length = 1084

 Score = 1211 bits (3133), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/810 (71%), Positives = 669/810 (82%), Gaps = 33/810 (4%)

Query: 334  LRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVI 393
            LR +L   Y +++VVDN+  A++VV M+T KY+HL++ACDTEVAKIDVKQETPVDHGE+ 
Sbjct: 288  LRDRLCRIYEDILVVDNIPLAEEVVKMITVKYRHLIYACDTEVAKIDVKQETPVDHGEIT 347

Query: 394  CFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN 453
            CFSIY GP+ADFG GKSCIWVD+LDGGG+++L +FA FF DPSI KVWHNYSFD HV+EN
Sbjct: 348  CFSIYGGPDADFGGGKSCIWVDVLDGGGKEILEKFANFFSDPSIMKVWHNYSFDCHVIEN 407

Query: 454  YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEG 513
            YG KVSGFHADTMHMARLWDSSR+  GGYSLE L+GD+KVMS          S+ N +E 
Sbjct: 408  YGFKVSGFHADTMHMARLWDSSRQLNGGYSLEKLSGDKKVMSR---------SQFNHEED 458

Query: 514  FMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
             +GK+SMK +FG++K+KKDGS GKI TIAPVE+LQR+ER  WI YSA D+ +TL LY+SL
Sbjct: 459  LIGKVSMKTLFGKKKVKKDGSEGKIITIAPVEDLQRDERIPWICYSALDAKSTLNLYESL 518

Query: 574  KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARA 633
            K  LL+M W  DG PV GK+M+DFY EYW+PFGEILV+ME+EGMLVDREYL  IEKVA+ 
Sbjct: 519  KSYLLDMPWNFDGVPVSGKTMYDFYNEYWRPFGEILVRMESEGMLVDREYLEGIEKVAKV 578

Query: 634  EQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNT 693
            EQE AV+RFRKWA ++CPDAKYMNVGSD QLRQLLFGG  N KD + +LP ERIFKVPN 
Sbjct: 579  EQEVAVDRFRKWACRYCPDAKYMNVGSDLQLRQLLFGGTLNRKDSNLALPTERIFKVPNV 638

Query: 694  EGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDG 753
            + VI EGKK P KFR++ ++S+G  L TEMYTA+GWPSV GDALK LA NIS+++D  D 
Sbjct: 639  DEVIEEGKKAPKKFRDMKVKSLGYTLKTEMYTASGWPSVSGDALKVLAGNISSDFDFTDE 698

Query: 754  AHDLD-----------------DSGCTEETEYKGAVASNNKIFATEQEAREACDAISALC 796
             ++LD                 +    + + Y  A ++    F TE+E REAC AI+ALC
Sbjct: 699  IYNLDDDHDDGDEHGNLSQNHIEVSKVDNSAYGTAFSA----FPTEKEGREACHAIAALC 754

Query: 797  EVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYK 856
            EV SI+SLISNFILPLQG N+SGK+ RVHCSLNINTETGRLSARRPNLQNQPALEKDRYK
Sbjct: 755  EVSSINSLISNFILPLQGHNISGKDNRVHCSLNINTETGRLSARRPNLQNQPALEKDRYK 814

Query: 857  IRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNA 916
            IRQAFIA PGNSLIVADYGQLELRILAHLANCKSM++AFKAGGDFHSRTAMNMYP+IR A
Sbjct: 815  IRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMMEAFKAGGDFHSRTAMNMYPYIREA 874

Query: 917  VETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVE 973
            VE  +VLLEWH   GEDKPPVPLLKDAF SERRKAKMLNFSIAYGKTPVGL++DW+V+V+
Sbjct: 875  VEKKEVLLEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTPVGLSKDWRVTVK 934

Query: 974  EAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERA 1033
            EAKKTVDLWYN+R+EVL WQE RKKE+R  + V+TLLGRARRFP +      Q+ HIERA
Sbjct: 935  EAKKTVDLWYNDRKEVLQWQEERKKEAREYHCVYTLLGRARRFPLMAQANTYQKGHIERA 994

Query: 1034 AINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVE 1093
            AINTPVQGSAADVAMCAM++IS N +LKELGWKLLLQVHDEVILEGP+ESAEVAK+IVVE
Sbjct: 995  AINTPVQGSAADVAMCAMIQISNNKKLKELGWKLLLQVHDEVILEGPTESAEVAKSIVVE 1054

Query: 1094 CMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            CMSKPF GKN L+VDLSVDAKCAQNWYSAK
Sbjct: 1055 CMSKPFYGKNILKVDLSVDAKCAQNWYSAK 1084


>gi|76880150|dbj|BAE45850.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score = 1200 bits (3104), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/809 (71%), Positives = 663/809 (81%), Gaps = 26/809 (3%)

Query: 334  LRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVI 393
            LR +L + Y  V +VDN+SAAK+VV  LT++Y+HLVHACDTEVAKIDVKQ+TPVDHGE+I
Sbjct: 351  LRERLGAMYDKVHIVDNLSAAKEVVRKLTSQYRHLVHACDTEVAKIDVKQQTPVDHGEII 410

Query: 394  CFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN 453
            CFSIYSGPEADFG+GKSCIWVD+LDG G++LL EFAPFF+DPSI+KVWHNYSFDNHV+EN
Sbjct: 411  CFSIYSGPEADFGDGKSCIWVDVLDGDGKNLLVEFAPFFQDPSIRKVWHNYSFDNHVIEN 470

Query: 454  YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEG 513
            YG KVSGFHADTMHMARLWDSSRRT GGYSLEALTGD  VM + +  + + +  G   EG
Sbjct: 471  YGFKVSGFHADTMHMARLWDSSRRTSGGYSLEALTGDSTVMRDARPVHAERLFHG---EG 527

Query: 514  FMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
              GKISMK IFGR+KLKKDG+ GK++ I  VEELQ+ ERELWI YSA DSI+TL LY+SL
Sbjct: 528  LFGKISMKTIFGRKKLKKDGTEGKVTVIPSVEELQKTERELWICYSALDSISTLMLYESL 587

Query: 574  KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARA 633
            K KL +  W  DG  V   SM++FY++YW+PFGE+LV+METEG+LVDR YL+EIEKVA+A
Sbjct: 588  KNKLAKRIWTFDG--VRKGSMYEFYEKYWRPFGELLVQMETEGVLVDRAYLAEIEKVAKA 645

Query: 634  EQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNT 693
            EQ+ A NRFR WA+K+C DAKYMNVGSDTQLRQL FGG  N K+  ESLP E+ FKVPN 
Sbjct: 646  EQQVAANRFRNWAAKYCHDAKYMNVGSDTQLRQLFFGGIQNRKNSDESLPYEKEFKVPNI 705

Query: 694  EGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDG 753
            + V  EGKK P+KFR I L  I   + TEMYTA+GWPSV GDALK L+  +SA++D +D 
Sbjct: 706  DKVTEEGKKAPTKFRKIRLHRICDLIDTEMYTASGWPSVSGDALKALSGKVSADFDILDE 765

Query: 754  AHDLDDSGCTEETEYKGAVASNNKI----------------FATEQEAREACDAISALCE 797
            A D  ++    ET    A+A+NN++                F   Q+  EAC AI+ALCE
Sbjct: 766  ADD--NAEEDPETSIDEALATNNEVPSQEPEVSIYGSAYNAFGGGQKGIEACHAIAALCE 823

Query: 798  VCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKI 857
            +CSI SLISNFILPLQG +VSG+NGR+HCSLNINTETGRLSARRPNLQNQPALEKDRYKI
Sbjct: 824  MCSIGSLISNFILPLQGQDVSGENGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKI 883

Query: 858  RQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAV 917
            RQAF+A  GNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY HIR AV
Sbjct: 884  RQAFVAAQGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYTHIREAV 943

Query: 918  ETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEE 974
            E G+VLLEWH   GE+KPPVPLLKDAF SERRKAKMLNFSIAYGKT +GLARDWKVSV+E
Sbjct: 944  ENGRVLLEWHPQPGEEKPPVPLLKDAFGSERRKAKMLNFSIAYGKTTIGLARDWKVSVKE 1003

Query: 975  AKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAA 1034
            AK+TVD WY +R+EV  WQE RK E+R    VHTLLGRAR FP++K+ T S + HIERAA
Sbjct: 1004 AKETVDRWYRDRKEVSDWQEQRKFEAREFRRVHTLLGRARWFPSVKNATGSVKGHIERAA 1063

Query: 1035 INTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVEC 1094
            INTPVQGSAADVAMCAMLEISKNARL+ELGWKLLLQVHDEVILEGP ES   A AIVV+C
Sbjct: 1064 INTPVQGSAADVAMCAMLEISKNARLEELGWKLLLQVHDEVILEGPEESENEAMAIVVDC 1123

Query: 1095 MSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            MSKPF GKN LRVDLSVD+KCA+NWYSAK
Sbjct: 1124 MSKPFGGKNILRVDLSVDSKCAKNWYSAK 1152


>gi|76880152|dbj|BAE45851.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score = 1195 bits (3091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/854 (69%), Positives = 679/854 (79%), Gaps = 34/854 (3%)

Query: 296  KLVSFKRSNQKNPKN-------DAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVV 348
            K V  +R+  K  KN       D   GT     + E     ++  LR +L + Y  V +V
Sbjct: 307  KRVILERATNKMEKNAIQSMETDVVNGTKTRIVSDEGTGVSQVS-LRERLGAMYDKVHMV 365

Query: 349  DNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNG 408
            DN+SAAK+VV  LT++Y+HLVHACDTEVAKIDVKQ+TPVDHG++ICFSIYSGPEADFG+G
Sbjct: 366  DNLSAAKEVVRKLTSQYRHLVHACDTEVAKIDVKQQTPVDHGDIICFSIYSGPEADFGDG 425

Query: 409  KSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHM 468
            KSCIWVD+LDGGG++LL EFAPFF+DPSI+KVWHNYSFDNHV+ENYG KVSGFHADTMHM
Sbjct: 426  KSCIWVDVLDGGGKNLLVEFAPFFQDPSIRKVWHNYSFDNHVIENYGFKVSGFHADTMHM 485

Query: 469  ARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRK 528
            ARLWDSSRRT GGYSLEALTGD  VM + +  + + +  G   EG  GKISMK IFGR+K
Sbjct: 486  ARLWDSSRRTSGGYSLEALTGDSTVMRDARPVHAERLFHG---EGLFGKISMKTIFGRKK 542

Query: 529  LKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKP 588
            LKKDG+ GK++ I  VEELQ+ ERELWI YSA DSI+TL LY+SLK KL +  W  DG  
Sbjct: 543  LKKDGTEGKVTVIPSVEELQKTERELWICYSALDSISTLMLYESLKNKLSKRIWTFDG-- 600

Query: 589  VPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASK 648
            V   SM++FY+ YW+PFGE+LV+METEG+LVDR YL+EIEKVA+AEQ+ A NRFR WA+K
Sbjct: 601  VRKGSMYEFYERYWRPFGELLVQMETEGVLVDRAYLAEIEKVAKAEQQVAANRFRNWAAK 660

Query: 649  HCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFR 708
            +CPDAKYMNVGSDTQLRQL FGG  N K+  ESLP E+ FKVPN +  I EGKK P+KFR
Sbjct: 661  YCPDAKYMNVGSDTQLRQLFFGGIQNRKNSDESLPYEKEFKVPNVDKGIEEGKKAPTKFR 720

Query: 709  NITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEY 768
             I L  I   + TEMYTA+GWPSV GDALK L+  +SA++D +D A D  +     ET  
Sbjct: 721  KIRLHRICDLIDTEMYTASGWPSVSGDALKALSGKVSADFDILDEADDDAEE--DPETRI 778

Query: 769  KGAVASNNKI----------------FATEQEAREACDAISALCEVCSIDSLISNFILPL 812
              A+A+NN++                F   Q+  EAC AI+ALCE+CSIDSLISNFILPL
Sbjct: 779  DEALATNNEVPSQEPEVSIYGSAYNAFGGGQKGIEACHAIAALCEMCSIDSLISNFILPL 838

Query: 813  QGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA 872
            QG +VSG+NGR+HCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAF+A  GNSLIVA
Sbjct: 839  QGQDVSGENGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFVAAQGNSLIVA 898

Query: 873  DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GE 929
            DYGQLELRILAHLAN KSMLDAFKAGGDFHSRTAMNMY HIR AVE G+VLLEWH   GE
Sbjct: 899  DYGQLELRILAHLANRKSMLDAFKAGGDFHSRTAMNMYTHIREAVENGEVLLEWHPQPGE 958

Query: 930  DKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEV 989
            +KPPVPLLKDAF SERRKAKMLNFSIAYGKT +GLARDWKVSV+EAK+TVD WY++R+EV
Sbjct: 959  EKPPVPLLKDAFGSERRKAKMLNFSIAYGKTTIGLARDWKVSVKEAKETVDRWYSDRKEV 1018

Query: 990  LTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMC 1049
              WQE RK E+R    VHTLLGRAR FP++K+ T S + HIERAAINTPVQGSAADVAMC
Sbjct: 1019 SDWQEQRKFEAREFRRVHTLLGRARWFPSVKNATGSVKGHIERAAINTPVQGSAADVAMC 1078

Query: 1050 AMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDL 1109
            AMLEISKNARL+ELGWKLLLQVHDEVILEGP ES   A AIVV+CMSKPF GKN LRVDL
Sbjct: 1079 AMLEISKNARLEELGWKLLLQVHDEVILEGPEESENEAMAIVVDCMSKPFGGKNILRVDL 1138

Query: 1110 SVDAKCAQNWYSAK 1123
            SVD+KCA+NWYSAK
Sbjct: 1139 SVDSKCAKNWYSAK 1152


>gi|22330154|ref|NP_175498.2| polymerase gamma 2 [Arabidopsis thaliana]
 gi|332194474|gb|AEE32595.1| polymerase gamma 2 [Arabidopsis thaliana]
          Length = 1050

 Score = 1179 bits (3049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/849 (67%), Positives = 671/849 (79%), Gaps = 34/849 (4%)

Query: 295  PKLVSFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAA 354
            PK    +R    +  +  A G       S+ E S +   +R  L   Y  V++VDNV AA
Sbjct: 216  PKGEGIQRPLISDKSSGTANGNKNTVAISKVERSTEPSNVRENLGKIYDKVLIVDNVQAA 275

Query: 355  KKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV 414
            K  V  L N++++ VH+CDTEV+ I+VK+ETPVDHGE+ICFSIY GPEADFGNGKSCIWV
Sbjct: 276  KDTVAKLVNQFRNHVHSCDTEVSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWV 335

Query: 415  DLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
            D+L   GR++L EF P+FED  I+KVWHNYSFD+H++ N+G+++SGFHADTMHMARLWDS
Sbjct: 336  DVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNHGIEISGFHADTMHMARLWDS 395

Query: 475  SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGS 534
            +RR +GGYSLEALT D KV+   +   + +         F+GKISMK IFG+RKLKKDGS
Sbjct: 396  ARRIKGGYSLEALTSDPKVLGGTQTKEEAE---------FLGKISMKTIFGKRKLKKDGS 446

Query: 535  AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSM 594
             GKI  I PVEELQRE+RE WISYSA D+I+TLKLY+S+ KKL  M W LDGKPV G++M
Sbjct: 447  EGKIVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTM 506

Query: 595  FDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAK 654
             DFY E+W+PFGE+LVKME EG+LVDREYL+EIEKVA+AEQ+ A +RFR WASK+CPDAK
Sbjct: 507  LDFYHEFWRPFGELLVKMEAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAK 566

Query: 655  YMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRS 714
            YMN+GSDTQLRQL FGG  NS D  E LP+E++FKVPN + VI EGKKTP+KFRNI L  
Sbjct: 567  YMNIGSDTQLRQLFFGGISNSHD--EVLPVEKLFKVPNIDKVIEEGKKTPTKFRNIKLHR 624

Query: 715  IG-VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDL---------------- 757
            I    L TE +TA+GWPSVGGD LK LA  +SAEYD +D   D+                
Sbjct: 625  ISDSPLSTENFTASGWPSVGGDVLKELAGKVSAEYDFMDDVSDISLEEVVEDDDVETSET 684

Query: 758  DDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNV 817
              S   +ET+   A  +    F   +  +EAC AI++LCEVCSIDSLISNFILPLQGSNV
Sbjct: 685  QKSKTDDETD-TSAYGTAYVAFGGGERGKEACHAIASLCEVCSIDSLISNFILPLQGSNV 743

Query: 818  SGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQL 877
            SGK+GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIR+AF+A PGN+L+VADYGQL
Sbjct: 744  SGKDGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVADYGQL 803

Query: 878  ELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPV 934
            ELRILAHL  CKSM++AFKAGGDFHSRTAMNMYPH+R AVE GQV+LEWH   GEDKPPV
Sbjct: 804  ELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPGEDKPPV 863

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            PLLKDAF SERRKAKMLNFSIAYGKT VGL+RDWKVS +EA++TVDLWYN+RQEV  WQE
Sbjct: 864  PLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRKWQE 923

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             RKKE+  D +V TLLGR+RRFPA KS  R+QRNHI+RAAINTPVQGSAADVAMCAMLEI
Sbjct: 924  MRKKEAIEDGYVLTLLGRSRRFPASKS--RAQRNHIQRAAINTPVQGSAADVAMCAMLEI 981

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
            S N +LK+LGW+LLLQ+HDEVILEGP ESAE+AK IVV+CMSKPFNG+N L VDLSVDAK
Sbjct: 982  SINQQLKKLGWRLLLQIHDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLSVDAK 1041

Query: 1115 CAQNWYSAK 1123
            CAQNWY+AK
Sbjct: 1042 CAQNWYAAK 1050


>gi|18087568|gb|AAL58915.1|AF462826_1 At1g50840/F8A12_8 [Arabidopsis thaliana]
 gi|20259545|gb|AAM13892.1| putative DNA polymerase A family protein [Arabidopsis thaliana]
 gi|71013470|dbj|BAE10873.1| PolI-like A DNA polymerase [Arabidopsis thaliana]
          Length = 1049

 Score = 1179 bits (3049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/849 (67%), Positives = 671/849 (79%), Gaps = 34/849 (4%)

Query: 295  PKLVSFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAA 354
            PK    +R    +  +  A G       S+ E S +   +R  L   Y  V++VDNV AA
Sbjct: 215  PKGEGIQRPLISDKSSGTANGNKNTVAISKVERSTEPSNVRENLGKIYDKVLIVDNVQAA 274

Query: 355  KKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV 414
            K  V  L N++++ VH+CDTEV+ I+VK+ETPVDHGE+ICFSIY GPEADFGNGKSCIWV
Sbjct: 275  KDTVAKLVNQFRNHVHSCDTEVSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWV 334

Query: 415  DLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
            D+L   GR++L EF P+FED  I+KVWHNYSFD+H++ N+G+++SGFHADTMHMARLWDS
Sbjct: 335  DVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNHGIEISGFHADTMHMARLWDS 394

Query: 475  SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGS 534
            +RR +GGYSLEALT D KV+   +   + +         F+GKISMK IFG+RKLKKDGS
Sbjct: 395  ARRIKGGYSLEALTSDPKVLGGTQTKEEAE---------FLGKISMKTIFGKRKLKKDGS 445

Query: 535  AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSM 594
             GKI  I PVEELQRE+RE WISYSA D+I+TLKLY+S+ KKL  M W LDGKPV G++M
Sbjct: 446  EGKIVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTM 505

Query: 595  FDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAK 654
             DFY E+W+PFGE+LVKME EG+LVDREYL+EIEKVA+AEQ+ A +RFR WASK+CPDAK
Sbjct: 506  LDFYHEFWRPFGELLVKMEAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAK 565

Query: 655  YMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRS 714
            YMN+GSDTQLRQL FGG  NS D  E LP+E++FKVPN + VI EGKKTP+KFRNI L  
Sbjct: 566  YMNIGSDTQLRQLFFGGISNSHD--EVLPVEKLFKVPNIDKVIEEGKKTPTKFRNIKLHR 623

Query: 715  IG-VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDL---------------- 757
            I    L TE +TA+GWPSVGGD LK LA  +SAEYD +D   D+                
Sbjct: 624  ISDSPLSTENFTASGWPSVGGDVLKELAGKVSAEYDFMDDVSDISLEEVVEDDDVETSET 683

Query: 758  DDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNV 817
              S   +ET+   A  +    F   +  +EAC AI++LCEVCSIDSLISNFILPLQGSNV
Sbjct: 684  QKSKTDDETD-TSAYGTAYVAFGGGERGKEACHAIASLCEVCSIDSLISNFILPLQGSNV 742

Query: 818  SGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQL 877
            SGK+GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIR+AF+A PGN+L+VADYGQL
Sbjct: 743  SGKDGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVADYGQL 802

Query: 878  ELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPV 934
            ELRILAHL  CKSM++AFKAGGDFHSRTAMNMYPH+R AVE GQV+LEWH   GEDKPPV
Sbjct: 803  ELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPGEDKPPV 862

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            PLLKDAF SERRKAKMLNFSIAYGKT VGL+RDWKVS +EA++TVDLWYN+RQEV  WQE
Sbjct: 863  PLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRKWQE 922

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             RKKE+  D +V TLLGR+RRFPA KS  R+QRNHI+RAAINTPVQGSAADVAMCAMLEI
Sbjct: 923  MRKKEAIEDGYVLTLLGRSRRFPASKS--RAQRNHIQRAAINTPVQGSAADVAMCAMLEI 980

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
            S N +LK+LGW+LLLQ+HDEVILEGP ESAE+AK IVV+CMSKPFNG+N L VDLSVDAK
Sbjct: 981  SINQQLKKLGWRLLLQIHDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLSVDAK 1040

Query: 1115 CAQNWYSAK 1123
            CAQNWY+AK
Sbjct: 1041 CAQNWYAAK 1049


>gi|297830744|ref|XP_002883254.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
 gi|297329094|gb|EFH59513.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1044

 Score = 1172 bits (3031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 577/825 (69%), Positives = 662/825 (80%), Gaps = 36/825 (4%)

Query: 323  SENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
            S  E    L  +R+ L   Y+ V+VVDNVS+AK+ V ML N+Y++LVHACDTEV++IDVK
Sbjct: 232  SNVEKCTNLSKVRANLKKIYNRVLVVDNVSSAKETVAMLMNQYRNLVHACDTEVSRIDVK 291

Query: 383  QETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWH 442
             ETPVDHGE+ICFSIY G EADFG+GKSCIWVD+L   GRD+L EF PFFED SIKKVWH
Sbjct: 292  TETPVDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWH 351

Query: 443  NYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502
            NYSFDNH++ NYG+K+SGFH DTMHMARLWDSSRR  GGYSLEALT D +V+   +   +
Sbjct: 352  NYSFDNHIIRNYGIKLSGFHGDTMHMARLWDSSRRISGGYSLEALTSDPRVLGGTETKEE 411

Query: 503  KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFD 562
             ++          GKISMK IFG+ KLKKDGS GK+  I PV+ELQ E+RE WISYSA D
Sbjct: 412  AEL---------FGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDREAWISYSALD 462

Query: 563  SINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDRE 622
            SI+TLKLY+S+KK+L    W LDG  +  ++MFDFYQEYWQPFGE+L KME+EGMLVDR+
Sbjct: 463  SISTLKLYESMKKQLQAKKWFLDGNLISKQNMFDFYQEYWQPFGELLAKMESEGMLVDRD 522

Query: 623  YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESL 682
            YL++IE VA+AEQE AV+RFR WASKHCPDAK+MNVGSDTQLRQL FGG  NS +D E L
Sbjct: 523  YLAQIEIVAKAEQEIAVSRFRSWASKHCPDAKHMNVGSDTQLRQLFFGGISNSCND-EDL 581

Query: 683  PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG-VDLPTEMYTATGWPSVGGDALKTLA 741
            P E++FKVPN + VI +GKK  +KFRNI L  I    LPTE +TA+GWPS+ GD LK LA
Sbjct: 582  PYEKLFKVPNVDKVIEKGKKRATKFRNIKLHRISDRPLPTEKFTASGWPSISGDTLKALA 641

Query: 742  RNISAEYDCVDGAHD------LDDSGCTE------ETEYKGA-VASNNKIFATEQEA--- 785
              +SAEYD  +G  D      + D  C        ET++    V S+   + T  +A   
Sbjct: 642  GKVSAEYDYTEGVSDTCLEENIGDDDCISLPDEVLETQHSNTTVESDTSAYGTAFDAFGG 701

Query: 786  ----REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARR 841
                +EAC AI+ALCEVCSIDSLISNFILPLQGSNVSGK+GRVHCSLNINTETGRLSARR
Sbjct: 702  GESGKEACHAIAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNINTETGRLSARR 761

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLA+CKSM +AF AGGDF
Sbjct: 762  PNLQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLASCKSMKEAFIAGGDF 821

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
            HSRTAMNMYPHIR AVE G+VLLEWH   G++KPPVPLLKDAFASERRKAKMLNFSIAYG
Sbjct: 822  HSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVPLLKDAFASERRKAKMLNFSIAYG 881

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
            KT +GL+RDWKVS+EEA+ TV+LWYN+RQEV  WQE RKKE+  + +V TLLGRAR+FP 
Sbjct: 882  KTAIGLSRDWKVSIEEAQDTVNLWYNDRQEVRKWQELRKKEAIQNGYVLTLLGRARKFPV 941

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
             +S  R+Q+NHIERAAINTPVQGSAADVAMCAMLEISKN RLKELGWKLLLQ+HDEVILE
Sbjct: 942  YRS--RAQKNHIERAAINTPVQGSAADVAMCAMLEISKNQRLKELGWKLLLQIHDEVILE 999

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            GPSESAE AK IVV CMS+PFNGKN L VDLSVDAKCAQNWY+ K
Sbjct: 1000 GPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNWYAGK 1044


>gi|334185498|ref|NP_001189942.1| polymerase gamma 1 [Arabidopsis thaliana]
 gi|332642872|gb|AEE76393.1| polymerase gamma 1 [Arabidopsis thaliana]
          Length = 1049

 Score = 1170 bits (3028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/825 (70%), Positives = 659/825 (79%), Gaps = 36/825 (4%)

Query: 323  SENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
            S+ E    L  +R+ L   Y+ V VVDNVS+AK+ V +L N+Y++LVHACDTEV++IDVK
Sbjct: 237  SKVEKCTNLSQVRANLKKIYNRVRVVDNVSSAKETVALLMNQYRNLVHACDTEVSRIDVK 296

Query: 383  QETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWH 442
             ETPVDHGE+ICFSIY G EADFG+GKSCIWVD+L   GRD+L EF PFFED SIKKVWH
Sbjct: 297  TETPVDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWH 356

Query: 443  NYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502
            NYSFDNH++ NYG+K+SGFH DTMHMARLWDSSRR  GGYSLEALT D KV+   +   +
Sbjct: 357  NYSFDNHIIRNYGIKLSGFHGDTMHMARLWDSSRRISGGYSLEALTSDPKVLGGTETKEE 416

Query: 503  KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFD 562
             ++          GKISMK IFG+ KLKKDGS GK+  I PV+ELQ E+RE WISYSA D
Sbjct: 417  AEL---------FGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDREAWISYSALD 467

Query: 563  SINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDRE 622
            SI+TLKLY+S+KK+L    W LDGK +  K+MFDFYQEYWQPFGE+L KME+EGMLVDR+
Sbjct: 468  SISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAKMESEGMLVDRD 527

Query: 623  YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESL 682
            YL++IE VA+AEQE AV+RFR WASKHCPDAK+MNVGSDTQLRQL FGG  NS +D E L
Sbjct: 528  YLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFGGISNSCND-EDL 586

Query: 683  PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG-VDLPTEMYTATGWPSVGGDALKTLA 741
            P E++FKVPN + VI EGKK  +KFRNI L  I    LPTE +TA+GWPSV GD LK LA
Sbjct: 587  PYEKLFKVPNVDKVIEEGKKRATKFRNIKLHRISDRPLPTEKFTASGWPSVSGDTLKALA 646

Query: 742  RNISAEYDCVDGAHD------LDDSGC-------TEETEYKGAVASNNKIFATEQEA--- 785
              +SAEYD ++G  D      + D  C        E      +V S+   + T  +A   
Sbjct: 647  GKVSAEYDYMEGVLDTCLEENIGDDDCISLPDEVVETQHVNTSVESDTSAYGTAFDAFGG 706

Query: 786  ----REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARR 841
                +EAC AI+ALCEVCSIDSLISNFILPLQGSNVSGK+GRVHCSLNINTETGRLSARR
Sbjct: 707  GESGKEACHAIAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNINTETGRLSARR 766

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLA+C+SM +AF AGGDF
Sbjct: 767  PNLQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLASCESMKEAFIAGGDF 826

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
            HSRTAMNMYPHIR AVE G+VLLEWH   G++KPPVPLLKDAFASERRKAKMLNFSIAYG
Sbjct: 827  HSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVPLLKDAFASERRKAKMLNFSIAYG 886

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
            KT +GL+RDWKVS EEA+ TV+LWYN+RQEV  WQE RKKE+    +V TLLGRAR+FP 
Sbjct: 887  KTAIGLSRDWKVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQKGYVLTLLGRARKFPE 946

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
             +S  R+Q+NHIERAAINTPVQGSAADVAMCAMLEIS N RLKELGWKLLLQVHDEVILE
Sbjct: 947  YRS--RAQKNHIERAAINTPVQGSAADVAMCAMLEISNNQRLKELGWKLLLQVHDEVILE 1004

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            GPSESAE AK IVV CMS+PFNGKN L VDLSVDAKCAQNWY+ K
Sbjct: 1005 GPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNWYAGK 1049


>gi|42565057|ref|NP_188690.3| polymerase gamma 1 [Arabidopsis thaliana]
 gi|30313818|gb|AAO34128.1| PolI-like DNA polymerase [Arabidopsis thaliana]
 gi|71013474|dbj|BAE10874.1| PolI-like B DNA polymerase [Arabidopsis thaliana]
 gi|110741933|dbj|BAE98907.1| putative DNA polymerase [Arabidopsis thaliana]
 gi|332642871|gb|AEE76392.1| polymerase gamma 1 [Arabidopsis thaliana]
          Length = 1034

 Score = 1170 bits (3027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/825 (70%), Positives = 659/825 (79%), Gaps = 36/825 (4%)

Query: 323  SENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
            S+ E    L  +R+ L   Y+ V VVDNVS+AK+ V +L N+Y++LVHACDTEV++IDVK
Sbjct: 222  SKVEKCTNLSQVRANLKKIYNRVRVVDNVSSAKETVALLMNQYRNLVHACDTEVSRIDVK 281

Query: 383  QETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWH 442
             ETPVDHGE+ICFSIY G EADFG+GKSCIWVD+L   GRD+L EF PFFED SIKKVWH
Sbjct: 282  TETPVDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWH 341

Query: 443  NYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502
            NYSFDNH++ NYG+K+SGFH DTMHMARLWDSSRR  GGYSLEALT D KV+   +   +
Sbjct: 342  NYSFDNHIIRNYGIKLSGFHGDTMHMARLWDSSRRISGGYSLEALTSDPKVLGGTETKEE 401

Query: 503  KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFD 562
             ++          GKISMK IFG+ KLKKDGS GK+  I PV+ELQ E+RE WISYSA D
Sbjct: 402  AEL---------FGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDREAWISYSALD 452

Query: 563  SINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDRE 622
            SI+TLKLY+S+KK+L    W LDGK +  K+MFDFYQEYWQPFGE+L KME+EGMLVDR+
Sbjct: 453  SISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAKMESEGMLVDRD 512

Query: 623  YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESL 682
            YL++IE VA+AEQE AV+RFR WASKHCPDAK+MNVGSDTQLRQL FGG  NS +D E L
Sbjct: 513  YLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFGGISNSCND-EDL 571

Query: 683  PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG-VDLPTEMYTATGWPSVGGDALKTLA 741
            P E++FKVPN + VI EGKK  +KFRNI L  I    LPTE +TA+GWPSV GD LK LA
Sbjct: 572  PYEKLFKVPNVDKVIEEGKKRATKFRNIKLHRISDRPLPTEKFTASGWPSVSGDTLKALA 631

Query: 742  RNISAEYDCVDGAHD------LDDSGC-------TEETEYKGAVASNNKIFATEQEA--- 785
              +SAEYD ++G  D      + D  C        E      +V S+   + T  +A   
Sbjct: 632  GKVSAEYDYMEGVLDTCLEENIGDDDCISLPDEVVETQHVNTSVESDTSAYGTAFDAFGG 691

Query: 786  ----REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARR 841
                +EAC AI+ALCEVCSIDSLISNFILPLQGSNVSGK+GRVHCSLNINTETGRLSARR
Sbjct: 692  GESGKEACHAIAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNINTETGRLSARR 751

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLA+C+SM +AF AGGDF
Sbjct: 752  PNLQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLASCESMKEAFIAGGDF 811

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
            HSRTAMNMYPHIR AVE G+VLLEWH   G++KPPVPLLKDAFASERRKAKMLNFSIAYG
Sbjct: 812  HSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVPLLKDAFASERRKAKMLNFSIAYG 871

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
            KT +GL+RDWKVS EEA+ TV+LWYN+RQEV  WQE RKKE+    +V TLLGRAR+FP 
Sbjct: 872  KTAIGLSRDWKVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQKGYVLTLLGRARKFPE 931

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
             +S  R+Q+NHIERAAINTPVQGSAADVAMCAMLEIS N RLKELGWKLLLQVHDEVILE
Sbjct: 932  YRS--RAQKNHIERAAINTPVQGSAADVAMCAMLEISNNQRLKELGWKLLLQVHDEVILE 989

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            GPSESAE AK IVV CMS+PFNGKN L VDLSVDAKCAQNWY+ K
Sbjct: 990  GPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNWYAGK 1034


>gi|12321800|gb|AAG50942.1|AC079284_17 DNA polymerase A family protein, putative [Arabidopsis thaliana]
          Length = 1067

 Score = 1167 bits (3019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/867 (66%), Positives = 671/867 (77%), Gaps = 51/867 (5%)

Query: 295  PKLVSFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAA 354
            PK    +R    +  +  A G       S+ E S +   +R  L   Y  V++VDNV AA
Sbjct: 214  PKGEGIQRPLISDKSSGTANGNKNTVAISKVERSTEPSNVRENLGKIYDKVLIVDNVQAA 273

Query: 355  KKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV 414
            K  V  L N++++ VH+CDTEV+ I+VK+ETPVDHGE+ICFSIY GPEADFGNGKSCIWV
Sbjct: 274  KDTVAKLVNQFRNHVHSCDTEVSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWV 333

Query: 415  DLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
            D+L   GR++L EF P+FED  I+KVWHNYSFD+H++ N+G+++SGFHADTMHMARLWDS
Sbjct: 334  DVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNHGIEISGFHADTMHMARLWDS 393

Query: 475  SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGS 534
            +RR +GGYSLEALT D KV+   +   + +         F+GKISMK IFG+RKLKKDGS
Sbjct: 394  ARRIKGGYSLEALTSDPKVLGGTQTKEEAE---------FLGKISMKTIFGKRKLKKDGS 444

Query: 535  AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSM 594
             GKI  I PVEELQRE+RE WISYSA D+I+TLKLY+S+ KKL  M W LDGKPV G++M
Sbjct: 445  EGKIVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTM 504

Query: 595  FDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAK 654
             DFY E+W+PFGE+LVKME EG+LVDREYL+EIEKVA+AEQ+ A +RFR WASK+CPDAK
Sbjct: 505  LDFYHEFWRPFGELLVKMEAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAK 564

Query: 655  YMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRS 714
            YMN+GSDTQLRQL FGG  NS  D E LP+E++FKVPN + VI EGKKTP+KFRNI L  
Sbjct: 565  YMNIGSDTQLRQLFFGGISNSSHD-EVLPVEKLFKVPNIDKVIEEGKKTPTKFRNIKLHR 623

Query: 715  IG-VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDL---------------- 757
            I    L TE +TA+GWPSVGGD LK LA  +SAEYD +D   D+                
Sbjct: 624  ISDSPLSTENFTASGWPSVGGDVLKELAGKVSAEYDFMDDVSDISLEEVVEDDDVETSET 683

Query: 758  DDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNV 817
              S   +ET+   A  +    F   +  +EAC AI++LCEVCSIDSLISNFILPLQGSNV
Sbjct: 684  QKSKTDDETD-TSAYGTAYVAFGGGERGKEACHAIASLCEVCSIDSLISNFILPLQGSNV 742

Query: 818  SGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQL 877
            SGK+GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIR+AF+A PGN+L+VADYGQL
Sbjct: 743  SGKDGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVADYGQL 802

Query: 878  ELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPV 934
            ELRILAHL  CKSM++AFKAGGDFHSRTAMNMYPH+R AVE GQV+LEWH   GEDKPPV
Sbjct: 803  ELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPGEDKPPV 862

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            PLLKDAF SERRKAKMLNFSIAYGKT VGL+RDWKVS +EA++TVDLWYN+RQEV  WQE
Sbjct: 863  PLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRKWQE 922

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             RKKE+  D +V TLLGR+RRFPA KS  R+QRNHI+RAAINTPVQGSAADVAMCAMLEI
Sbjct: 923  MRKKEAIEDGYVLTLLGRSRRFPASKS--RAQRNHIQRAAINTPVQGSAADVAMCAMLEI 980

Query: 1055 SKNARLKELGWKLLL------------------QVHDEVILEGPSESAEVAKAIVVECMS 1096
            S N +LK+LGW+LLL                  Q+HDEVILEGP ESAE+AK IVV+CMS
Sbjct: 981  SINQQLKKLGWRLLLQWSLLDWKLSNKGNLYWKQIHDEVILEGPIESAEIAKDIVVDCMS 1040

Query: 1097 KPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            KPFNG+N L VDLSVDAKCAQNWY+AK
Sbjct: 1041 KPFNGRNILSVDLSVDAKCAQNWYAAK 1067


>gi|11994141|dbj|BAB01162.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1088

 Score = 1167 bits (3018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 577/821 (70%), Positives = 656/821 (79%), Gaps = 36/821 (4%)

Query: 323  SENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
            S+ E    L  +R+ L   Y+ V VVDNVS+AK+ V +L N+Y++LVHACDTEV++IDVK
Sbjct: 187  SKVEKCTNLSQVRANLKKIYNRVRVVDNVSSAKETVALLMNQYRNLVHACDTEVSRIDVK 246

Query: 383  QETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWH 442
             ETPVDHGE+ICFSIY G EADFG+GKSCIWVD+L   GRD+L EF PFFED SIKKVWH
Sbjct: 247  TETPVDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWH 306

Query: 443  NYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502
            NYSFDNH++ NYG+K+SGFH DTMHMARLWDSSRR  GGYSLEALT D KV+   +   +
Sbjct: 307  NYSFDNHIIRNYGIKLSGFHGDTMHMARLWDSSRRISGGYSLEALTSDPKVLGGTETKEE 366

Query: 503  KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFD 562
             ++          GKISMK IFG+ KLKKDGS GK+  I PV+ELQ E+RE WISYSA D
Sbjct: 367  AEL---------FGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDREAWISYSALD 417

Query: 563  SINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDRE 622
            SI+TLKLY+S+KK+L    W LDGK +  K+MFDFYQEYWQPFGE+L KME+EGMLVDR+
Sbjct: 418  SISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAKMESEGMLVDRD 477

Query: 623  YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESL 682
            YL++IE VA+AEQE AV+RFR WASKHCPDAK+MNVGSDTQLRQL FGG  NS +D E L
Sbjct: 478  YLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFGGISNSCND-EDL 536

Query: 683  PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG-VDLPTEMYTATGWPSVGGDALKTLA 741
            P E++FKVPN + VI EGKK  +KFRNI L  I    LPTE +TA+GWPSV GD LK LA
Sbjct: 537  PYEKLFKVPNVDKVIEEGKKRATKFRNIKLHRISDRPLPTEKFTASGWPSVSGDTLKALA 596

Query: 742  RNISAEYDCVDGAHD------LDDSGC-------TEETEYKGAVASNNKIFATEQEA--- 785
              +SAEYD ++G  D      + D  C        E      +V S+   + T  +A   
Sbjct: 597  GKVSAEYDYMEGVLDTCLEENIGDDDCISLPDEVVETQHVNTSVESDTSAYGTAFDAFGG 656

Query: 786  ----REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARR 841
                +EAC AI+ALCEVCSIDSLISNFILPLQGSNVSGK+GRVHCSLNINTETGRLSARR
Sbjct: 657  GESGKEACHAIAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNINTETGRLSARR 716

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLA+C+SM +AF AGGDF
Sbjct: 717  PNLQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLASCESMKEAFIAGGDF 776

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
            HSRTAMNMYPHIR AVE G+VLLEWH   G++KPPVPLLKDAFASERRKAKMLNFSIAYG
Sbjct: 777  HSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVPLLKDAFASERRKAKMLNFSIAYG 836

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
            KT +GL+RDWKVS EEA+ TV+LWYN+RQEV  WQE RKKE+    +V TLLGRAR+FP 
Sbjct: 837  KTAIGLSRDWKVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQKGYVLTLLGRARKFPE 896

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
             +S  R+Q+NHIERAAINTPVQGSAADVAMCAMLEIS N RLKELGWKLLLQVHDEVILE
Sbjct: 897  YRS--RAQKNHIERAAINTPVQGSAADVAMCAMLEISNNQRLKELGWKLLLQVHDEVILE 954

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            GPSESAE AK IVV CMS+PFNGKN L VDLSVDAKCAQNW
Sbjct: 955  GPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNW 995


>gi|357459413|ref|XP_003599987.1| DNA polymerase [Medicago truncatula]
 gi|355489035|gb|AES70238.1| DNA polymerase [Medicago truncatula]
          Length = 1112

 Score = 1164 bits (3012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/812 (70%), Positives = 662/812 (81%), Gaps = 37/812 (4%)

Query: 334  LRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVI 393
            LR +L S Y +++VV+N+S A++V  MLT  Y+HL+HACDTEV+KIDVKQETP+DHGE+I
Sbjct: 316  LRERLCSIYEDILVVNNISHAEQVAKMLTVNYRHLIHACDTEVSKIDVKQETPIDHGEII 375

Query: 394  CFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN 453
            CFSIYSGPEADFG GKSCIWVD+LDGGG+++LN+FA FF+DPSIKKVWHNYSFD HV++N
Sbjct: 376  CFSIYSGPEADFGGGKSCIWVDVLDGGGKEILNKFADFFQDPSIKKVWHNYSFDCHVIQN 435

Query: 454  YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEG 513
            YG  VSGFHADTMHMARLWDSSRR  GGYSLEAL+GD++VMS     ++ D+        
Sbjct: 436  YGFNVSGFHADTMHMARLWDSSRRLVGGYSLEALSGDKEVMSRGNLNHETDL-------- 487

Query: 514  FMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
             +GK+SM  +FG+RK KKDGS GKI TI PVE LQREER  WI YSA D+ +TLKLY+SL
Sbjct: 488  -IGKVSMTTLFGQRKEKKDGSMGKIVTIEPVEVLQREERIPWICYSALDARSTLKLYESL 546

Query: 574  KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARA 633
            K  L ++ WKLDG+ +  ++MFDFY+ Y QPFGE+LVKME EGMLVDR YL EIEKVA+A
Sbjct: 547  KSHLSDLPWKLDGELLR-ENMFDFYEIYLQPFGELLVKMECEGMLVDRLYLQEIEKVAKA 605

Query: 634  EQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNS-----------KDDSESL 682
            EQ+AA+NRFRKWAS++CPDAKYMNVGSDTQLR LLFGG  N            K+ +E++
Sbjct: 606  EQQAALNRFRKWASRYCPDAKYMNVGSDTQLRVLLFGGTVNRCTLFKSFVELLKNHNEAI 665

Query: 683  PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLAR 742
            P ERIFKVPN + VI +GKK PSK R+I L SIG +L  ++YT +GWPS  G ALK LA 
Sbjct: 666  PTERIFKVPNVDKVIEKGKKIPSKLRDIKLNSIGCNLNVDIYTPSGWPSCSGPALKALAG 725

Query: 743  NISAEYDCVDGAHDL-DDSGCTEETEYK------GAVASNNKIFATEQEAREACDAISAL 795
             +SAEYD      DL D+ G   + E +       A  +    F TE+E REAC AI+AL
Sbjct: 726  KVSAEYD-----FDLEDEDGNPSQREDEPLEIDNSAYGTAYFAFPTEEEGREACHAIAAL 780

Query: 796  CEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRY 855
            CE+CSIDSLISNFILPLQG N+SGK+ RVHCS+NINTETGRLSARRPNLQNQPALEKDRY
Sbjct: 781  CEICSIDSLISNFILPLQGHNISGKDQRVHCSININTETGRLSARRPNLQNQPALEKDRY 840

Query: 856  KIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRN 915
            KIRQAF+A PGNSLIVADYGQLELRILAHL +CKSML+AF+AGGDFHSRTAMNMYP+IR 
Sbjct: 841  KIRQAFVAAPGNSLIVADYGQLELRILAHLTDCKSMLEAFEAGGDFHSRTAMNMYPYIRE 900

Query: 916  AVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSV 972
            AVE  +VLLEWH   GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP GL++DWKVSV
Sbjct: 901  AVEKKEVLLEWHPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPQGLSKDWKVSV 960

Query: 973  EEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS-QRNHIE 1031
            +EAK TVDLWYN+R+EVL WQ+ RKKE+     V+TLLGRARRFP I    R+  + HIE
Sbjct: 961  KEAKNTVDLWYNDRKEVLKWQQKRKKEAFEFGCVYTLLGRARRFPEIFLGRRNFYKGHIE 1020

Query: 1032 RAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIV 1091
            RAAINTPVQGSAADVAM AMLEISKN +LKELGWKLLLQVHDEVILEGP+ESAEVAK IV
Sbjct: 1021 RAAINTPVQGSAADVAMLAMLEISKNKQLKELGWKLLLQVHDEVILEGPTESAEVAKNIV 1080

Query: 1092 VECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            ++CMSKPFNG+N L+V L+VDAKCAQNWY+AK
Sbjct: 1081 IDCMSKPFNGQNILKVGLTVDAKCAQNWYAAK 1112


>gi|357459417|ref|XP_003599989.1| DNA polymerase [Medicago truncatula]
 gi|355489037|gb|AES70240.1| DNA polymerase [Medicago truncatula]
          Length = 1098

 Score = 1160 bits (3002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/812 (69%), Positives = 662/812 (81%), Gaps = 37/812 (4%)

Query: 334  LRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVI 393
            LR +L S Y +++VV+N+S A++V  MLT  Y+HL+HACDTEV+KIDVKQETP+DHGE+I
Sbjct: 302  LRERLCSIYEDILVVNNISHAEQVAKMLTVNYRHLIHACDTEVSKIDVKQETPIDHGEII 361

Query: 394  CFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN 453
            CFSIYSGPEADFG GKSCIWVD+LDGGG+++LN+FA FF+DPSIKKVWHNYSFD HV++N
Sbjct: 362  CFSIYSGPEADFGGGKSCIWVDVLDGGGKEILNKFADFFQDPSIKKVWHNYSFDCHVIQN 421

Query: 454  YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEG 513
            YG KVSGFHADTMHMARLWDSSRR  GGYSLEAL+GD++VMS     ++ D+        
Sbjct: 422  YGFKVSGFHADTMHMARLWDSSRRLVGGYSLEALSGDKEVMSRGNLNHETDL-------- 473

Query: 514  FMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
             +GK+SM  IFG+RK KKDGS GKI TI PVE LQREE   WI YSA D+ +TLKLY+SL
Sbjct: 474  -IGKVSMTTIFGQRKEKKDGSMGKIVTIEPVEVLQREEHIPWICYSALDARSTLKLYESL 532

Query: 574  KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARA 633
            K  L ++ WK+DG+ +  ++MFDFY+ Y QPFGE+LVKME EGMLVDR YL EIEKVA+A
Sbjct: 533  KSHLSDLPWKIDGELLR-ENMFDFYEIYLQPFGELLVKMECEGMLVDRLYLQEIEKVAKA 591

Query: 634  EQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNS-----------KDDSESL 682
            EQ+AA+NRFRKWAS++CPDAKYMNVGSDTQLR LLFGG  N            ++ +E++
Sbjct: 592  EQQAALNRFRKWASRYCPDAKYMNVGSDTQLRVLLFGGTVNRCTLFKSFVELLENHNEAI 651

Query: 683  PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLAR 742
            P ERIFKVPN + VI +GKK PSK R+I L SIG +L  ++YT +GWPS  G ALK LA 
Sbjct: 652  PTERIFKVPNVDKVIEKGKKIPSKLRDIKLNSIGCNLNVDIYTPSGWPSCSGPALKALAG 711

Query: 743  NISAEYDCVDGAHDL-DDSGCTEETEYK------GAVASNNKIFATEQEAREACDAISAL 795
             +SAEYD      DL D+ G   + E +       A  +    F TE+E REAC AI+AL
Sbjct: 712  KVSAEYD-----FDLEDEDGNPSQREDEPLEIDNSAYGTAYFAFPTEEEGREACHAIAAL 766

Query: 796  CEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRY 855
            CE+CSIDSLISNFILPLQG N+SGK+ RVHCS+NINTETGRLSARRPNLQNQPALEKDRY
Sbjct: 767  CEICSIDSLISNFILPLQGHNISGKDQRVHCSININTETGRLSARRPNLQNQPALEKDRY 826

Query: 856  KIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRN 915
            KIRQAF+A PGNSLIVADYGQLELRILAHL +CKSML+AF+AGGDFHSRTAMNMYP+IR 
Sbjct: 827  KIRQAFVAAPGNSLIVADYGQLELRILAHLTDCKSMLEAFEAGGDFHSRTAMNMYPYIRE 886

Query: 916  AVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSV 972
            AVE  +VLLEWH   GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP GL++DWKVSV
Sbjct: 887  AVEKKEVLLEWHPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPQGLSKDWKVSV 946

Query: 973  EEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS-QRNHIE 1031
            +EAK TVDLWYN+R+EVL WQ+ RKKE+     V+TLLGRARRFP I    R+  + HIE
Sbjct: 947  KEAKNTVDLWYNDRKEVLKWQQKRKKEAFEFGCVYTLLGRARRFPEIFLGRRNYYKGHIE 1006

Query: 1032 RAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIV 1091
            RAAINTPVQGSAADVAM AMLEISKN +LKELGWKLLLQVHDEVILEGP++SAEVAK IV
Sbjct: 1007 RAAINTPVQGSAADVAMLAMLEISKNKQLKELGWKLLLQVHDEVILEGPTKSAEVAKNIV 1066

Query: 1092 VECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            ++CMSKPFNG+N L+V L+VDAKCAQNWY+AK
Sbjct: 1067 IDCMSKPFNGQNILKVGLTVDAKCAQNWYAAK 1098


>gi|297847428|ref|XP_002891595.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297337437|gb|EFH67854.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1047

 Score = 1159 bits (2999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/821 (68%), Positives = 660/821 (80%), Gaps = 32/821 (3%)

Query: 323  SENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
            S+ E S +   +R  L   Y  V+VVDNV AAK  V  L N+Y++ VH+CDTEV+ I+VK
Sbjct: 239  SKVEKSTEPSNVRENLRKIYDKVLVVDNVQAAKDTVAKLVNQYRNHVHSCDTEVSGIEVK 298

Query: 383  QETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWH 442
            +ETPVDHGE+ICFSIY GPEADFG GKSCIWVD+L   GR++L EF P+FED  I+KVWH
Sbjct: 299  EETPVDHGELICFSIYCGPEADFGYGKSCIWVDVLGENGREVLAEFKPYFEDSFIRKVWH 358

Query: 443  NYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502
            NYSFD+H++ N+G+++SGFHADTMHMARLWDS+RR EGGYSLEALT D KV+   +   +
Sbjct: 359  NYSFDSHIIRNHGIEISGFHADTMHMARLWDSARRIEGGYSLEALTSDPKVLGGTQTKEE 418

Query: 503  KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFD 562
             D         F+GKISMK IFG+RKLKKDGS GK+  I PVEELQRE+RE WISYSA D
Sbjct: 419  AD---------FLGKISMKTIFGKRKLKKDGSEGKMVVIPPVEELQREDREAWISYSALD 469

Query: 563  SINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDRE 622
            +I+TLKLY+S+ KKL  M W+LDGKPV  ++M DFY E+W+PFGE+LVKME EG+LVDRE
Sbjct: 470  AISTLKLYESMTKKLQMMDWRLDGKPVLERTMLDFYHEFWRPFGELLVKMEAEGILVDRE 529

Query: 623  YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESL 682
            YL+EIEKVA+AEQ+ A +RFR WASK+CPDAKYMN+GSDTQLRQL FGG  NS +  E L
Sbjct: 530  YLAEIEKVAKAEQQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFFGGISNSVN-GEVL 588

Query: 683  PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG-VDLPTEMYTATGWPSVGGDALKTLA 741
            P+E++FK+PN + VI  GKKT +KFRNI L  I    L TE  TA+GWPS+ GD LK LA
Sbjct: 589  PVEKLFKIPNIDKVIEVGKKTATKFRNIKLHRISDSPLSTENLTASGWPSISGDVLKELA 648

Query: 742  RNISAEYDCVDGAHDL--------DDSGCTEETE-YKGAVASNNKI-------FATEQEA 785
              +SAEYD ++   D+        +D+  T +T+  K  V ++          F   +  
Sbjct: 649  GKVSAEYDFMEDVSDISLEEVAEDNDADQTSKTQKSKTDVQTDTSAYGIAYVAFGGGERG 708

Query: 786  REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQ 845
            +EAC AI++LCEVCSID+LISNFILPLQGSNVSGK+GRVHCSLNINTETGRLSARRPNLQ
Sbjct: 709  KEACHAIASLCEVCSIDALISNFILPLQGSNVSGKDGRVHCSLNINTETGRLSARRPNLQ 768

Query: 846  NQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
            NQPALEKDRYKIR+AF+A PGN+L+VADYGQLELRILAHL  CKSM++AFKAGGDFHSRT
Sbjct: 769  NQPALEKDRYKIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRT 828

Query: 906  AMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPV 962
            AMNMYPHIR AVE GQV+LEWH   GEDKPPVPLLKDAF SERRKAKMLNFSIAYGKT +
Sbjct: 829  AMNMYPHIREAVENGQVILEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAI 888

Query: 963  GLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSL 1022
            GL+RDWKVSVEEA+ TV LWYN+RQEV  WQE RKKE+  D +V TLLGR+RRFP  KS 
Sbjct: 889  GLSRDWKVSVEEAQDTVKLWYNDRQEVRKWQERRKKEAIEDGYVRTLLGRSRRFPRYKS- 947

Query: 1023 TRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSE 1082
             R+Q+NHI+RAAINTPVQGSAADVAMCAMLEIS N +LK+LGW+LLLQ+HDEVILEGP E
Sbjct: 948  -RAQKNHIQRAAINTPVQGSAADVAMCAMLEISTNQQLKKLGWRLLLQIHDEVILEGPIE 1006

Query: 1083 SAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            SAE+AK IVV+CMSKPFNG+N L VDLSVDAKCAQNWY+AK
Sbjct: 1007 SAEIAKDIVVDCMSKPFNGRNILSVDLSVDAKCAQNWYAAK 1047


>gi|218195671|gb|EEC78098.1| hypothetical protein OsI_17597 [Oryza sativa Indica Group]
          Length = 1032

 Score = 1116 bits (2886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/799 (68%), Positives = 645/799 (80%), Gaps = 25/799 (3%)

Query: 335  RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
            R  LA+ Y  V+VVDNV +A+ VV +LT+KYK+ +HACDTEVA IDVKQETPV HGEVIC
Sbjct: 249  RKALATVYDKVLVVDNVKSARSVVQLLTSKYKNFIHACDTEVANIDVKQETPVSHGEVIC 308

Query: 395  FSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
            FSIYSG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSI+KVWHNYSFD+HV+
Sbjct: 309  FSIYSGNSDAEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIRKVWHNYSFDSHVI 367

Query: 452  ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
            ENYG+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D +VM    K  QK        
Sbjct: 368  ENYGIKVAGFHADTMHLARLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQK-------- 419

Query: 512  EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYK 571
               +GK SMK IFG +K+KKDGSAGKI ++ PVE LQR++RE+WI YS+ DS++TL+LY+
Sbjct: 420  ---IGKRSMKTIFGWKKIKKDGSAGKIISMEPVEVLQRDDREMWICYSSLDSMSTLRLYE 476

Query: 572  SLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVA 631
            SLK KL +  W  DG   P  SM+DFY+EYW+PFG +LVKMET GMLVDR YLSEIEKVA
Sbjct: 477  SLKSKLEKKHWTFDG--CPRGSMYDFYEEYWRPFGALLVKMETAGMLVDRGYLSEIEKVA 534

Query: 632  RAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVP 691
             A+++ A ++FRKWASK+CPDAKYMNV SDTQ+RQL FGG  N     E+LP  R  KVP
Sbjct: 535  VAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIENRCKPGETLPKSRTIKVP 594

Query: 692  NTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCV 751
            N   +IAEGKKTP K+R I L SI  DL T+++TA+GWPSV GDAL++LA  +  +    
Sbjct: 595  NDGSLIAEGKKTP-KYRTIELFSIVEDLKTDLFTASGWPSVSGDALRSLAGKLPTDLVYT 653

Query: 752  DGAHDLDDSGCTEETEY----KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISN 807
                + DDSG +E +E+      +  +  + F   ++ +EAC AI+ALCE+CSIDSLISN
Sbjct: 654  TDDVEDDDSGDSEISEHDLNDTASYGTAYEAFGGGKKGKEACHAIAALCEICSIDSLISN 713

Query: 808  FILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN 867
            FILPLQG+++S   GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIRQAF+A PGN
Sbjct: 714  FILPLQGNHISCDEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGN 773

Query: 868  SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH 927
            SLIVADYGQLELRILAHLA+CKSMLDAFKAGGDFHSRTAMNMY HIR+AVE  +VLLEWH
Sbjct: 774  SLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEKKVLLEWH 833

Query: 928  ---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYN 984
               G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKTPVGLARDWKVSV+EAK T+ LWY 
Sbjct: 834  PQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLWYR 893

Query: 985  ERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAA 1044
            +R+EVL WQ  +K+ ++    V+TLLGR+RRFP +   T  QR HIERAAIN PVQGSAA
Sbjct: 894  DRKEVLAWQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQRGHIERAAINAPVQGSAA 953

Query: 1045 DVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNN 1104
            DVAMCAMLEI +NARLKELGW+LLLQVHDEVILEGP+ESA++AK+IVVECMSKPF G N 
Sbjct: 954  DVAMCAMLEIDRNARLKELGWRLLLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNI 1013

Query: 1105 LRVDLSVDAKCAQNWYSAK 1123
            L V+L+VDAKCAQNWY+AK
Sbjct: 1014 LNVELAVDAKCAQNWYAAK 1032


>gi|222629638|gb|EEE61770.1| hypothetical protein OsJ_16332 [Oryza sativa Japonica Group]
          Length = 885

 Score = 1113 bits (2879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/799 (68%), Positives = 644/799 (80%), Gaps = 25/799 (3%)

Query: 335  RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
            R  LA+ Y  V+VVDNV +A+ VV +LT+KYK+ +HACDTEVA IDVKQETPV HGEVIC
Sbjct: 102  RKALATVYDKVLVVDNVKSARSVVQLLTSKYKNFIHACDTEVANIDVKQETPVSHGEVIC 161

Query: 395  FSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
            FSIYSG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSI+KVWHNYSFD+HV+
Sbjct: 162  FSIYSGNSDAEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIRKVWHNYSFDSHVI 220

Query: 452  ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
            ENYG+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D +VM    K  QK        
Sbjct: 221  ENYGIKVAGFHADTMHLARLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQK-------- 272

Query: 512  EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYK 571
               +GK SMK IFG +K+KKDGSAGKI ++ PVE LQR++RE+WI YS+ DS++TL+LY+
Sbjct: 273  ---IGKRSMKTIFGWKKIKKDGSAGKIISMEPVEVLQRDDREMWICYSSLDSMSTLRLYE 329

Query: 572  SLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVA 631
            SLK KL +  W  DG   P  SM+DFY+EYW+PFG +LVKMET GMLVDR YLSEIEKVA
Sbjct: 330  SLKSKLEKKHWTFDG--CPRGSMYDFYEEYWRPFGALLVKMETAGMLVDRGYLSEIEKVA 387

Query: 632  RAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVP 691
             A+++ A ++FRKWASK+CPDAKYMNV SDTQ+RQL FGG  N     E+LP  R  KVP
Sbjct: 388  VAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIENRCKPGETLPKSRTIKVP 447

Query: 692  NTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCV 751
            N   +IAEGKKTP K+  I L SI  DL T+++TA+GWPSV GDAL++LA  +  +    
Sbjct: 448  NDGSLIAEGKKTP-KYCTIELFSIVEDLKTDLFTASGWPSVSGDALRSLAGKLPTDLVYT 506

Query: 752  DGAHDLDDSGCTEETEY----KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISN 807
                + DDSG +E +E+      +  +  + F   ++ +EAC AI+ALCE+CSIDSLISN
Sbjct: 507  TDDVEDDDSGDSEISEHDLNDTASYGTAYEAFGGGKKGKEACHAIAALCEICSIDSLISN 566

Query: 808  FILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN 867
            FILPLQG+++S   GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIRQAF+A PGN
Sbjct: 567  FILPLQGNHISCDEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGN 626

Query: 868  SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH 927
            SLIVADYGQLELRILAHLA+CKSMLDAFKAGGDFHSRTAMNMY HIR+AVE  +VLLEWH
Sbjct: 627  SLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEKKVLLEWH 686

Query: 928  ---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYN 984
               G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKTPVGLARDWKVSV+EAK T+ LWY 
Sbjct: 687  PQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLWYR 746

Query: 985  ERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAA 1044
            +R+EVL WQ  +K+ ++    V+TLLGR+RRFP +   T  QR HIERAAIN PVQGSAA
Sbjct: 747  DRKEVLAWQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQRGHIERAAINAPVQGSAA 806

Query: 1045 DVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNN 1104
            DVAMCAMLEI +NARLKELGW+LLLQVHDEVILEGP+ESA++AK+IVVECMSKPF G N 
Sbjct: 807  DVAMCAMLEIDRNARLKELGWRLLLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNI 866

Query: 1105 LRVDLSVDAKCAQNWYSAK 1123
            L V+L+VDAKCAQNWY+AK
Sbjct: 867  LNVELAVDAKCAQNWYAAK 885


>gi|413919673|gb|AFW59605.1| chloroplast DNA polymerase [Zea mays]
          Length = 1033

 Score = 1110 bits (2872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/823 (66%), Positives = 641/823 (77%), Gaps = 29/823 (3%)

Query: 314  EGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACD 373
            E T Q  +     + E L+  R  L++ Y  V+VVDNV +A+ VV +LT KY++ +HACD
Sbjct: 227  EETVQPSRTRAPSSQESLDA-RKALSTIYDKVLVVDNVMSARSVVQLLTTKYRNYIHACD 285

Query: 374  TEVAKIDVKQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAP 430
            TEVA I+VKQETPV HG+V CFSIYSG    EADFGNGK+CIWVD+LDGG  D+L EF P
Sbjct: 286  TEVANINVKQETPVGHGKVTCFSIYSGTKGAEADFGNGKTCIWVDVLDGGP-DVLMEFVP 344

Query: 431  FFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGD 490
            FFED SI+KVWHNYSFD+HV+ENYG+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D
Sbjct: 345  FFEDSSIRKVWHNYSFDSHVIENYGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTND 404

Query: 491  RKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQRE 550
             +VM    K  QK           +GK SMK IFGR+K+KKDGS GKI+ I PVE LQRE
Sbjct: 405  HRVMGVVPKELQK-----------IGKRSMKTIFGRKKIKKDGSEGKITAIEPVEILQRE 453

Query: 551  ERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILV 610
            +RELWI YS+ DS++TL+LY+SLK KL    W  DG P PG S++DFY+EYW PFG ILV
Sbjct: 454  DRELWICYSSLDSMSTLRLYESLKSKLERKPWTFDGYPRPGGSLYDFYEEYWCPFGAILV 513

Query: 611  KMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
            KMET GMLVDR YLSEIEKVA A++E+A ++FRKWASK+CPDAKYMNV SDTQ+RQL FG
Sbjct: 514  KMETAGMLVDRAYLSEIEKVAVAQRESAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFG 573

Query: 671  GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWP 730
            G  N     + LP  +  KVPN E  ++EGKK P K+R I L SI  DL T+++TA+GWP
Sbjct: 574  GIENIYKSGDFLPKSKAIKVPNNETAVSEGKKVP-KYRTIDLFSIVEDLKTDIFTASGWP 632

Query: 731  SVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYK-------GAVASNNKIFATEQ 783
            SV G AL+ LA  + +  D V    D++D  C   +E          +  +    F   +
Sbjct: 633  SVSGAALRNLAGKVPS--DLVYSTDDVNDDECGIHSEISHCDLEDTSSYGTAYDAFGGGK 690

Query: 784  EAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPN 843
            E +EAC AI+ALCE+CSI+SLISNFILPLQG+++S K GR+HCSLNINTETGRLSAR PN
Sbjct: 691  EGKEACHAIAALCEICSINSLISNFILPLQGNHISCKEGRIHCSLNINTETGRLSARAPN 750

Query: 844  LQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHS 903
            LQNQPALEKDRYKIRQAF+A PGN+LIVADYGQLELRILAHLA+CKSMLDAFKAGGDFHS
Sbjct: 751  LQNQPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLADCKSMLDAFKAGGDFHS 810

Query: 904  RTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
            RTAMNMY HIR AVE  +V+LEWH   G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKT
Sbjct: 811  RTAMNMYQHIREAVEEEKVILEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKT 870

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GLARDWKVSV+EAK T+ LWY++R+EVL WQ  +K+ +     V+TLLGR+RRFP + 
Sbjct: 871  AHGLARDWKVSVKEAKDTLKLWYSDRKEVLAWQMKQKQLAHEKREVYTLLGRSRRFPNMA 930

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGP 1080
              T  QR HIERAAIN PVQGSAADVAMCAMLEI +N RLKELGW LLLQVHDEVILEGP
Sbjct: 931  HATSGQRGHIERAAINAPVQGSAADVAMCAMLEIDRNTRLKELGWTLLLQVHDEVILEGP 990

Query: 1081 SESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            SESAE+AK+IVVECMSKPF G N L+VDL+VDAKCAQNWY+AK
Sbjct: 991  SESAELAKSIVVECMSKPFYGTNILKVDLAVDAKCAQNWYAAK 1033


>gi|242080755|ref|XP_002445146.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
 gi|241941496|gb|EES14641.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
          Length = 1178

 Score = 1106 bits (2860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/798 (67%), Positives = 633/798 (79%), Gaps = 24/798 (3%)

Query: 335  RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
            R  LAS Y  V+VVDN+ +A+ +V +LT KYK  +HACDTEVA I+ K+ETPV HGEVIC
Sbjct: 396  RKALASIYDKVLVVDNIESARSIVKLLTTKYKSFIHACDTEVANIEAKEETPVGHGEVIC 455

Query: 395  FSIYSG----PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHV 450
            FSIYS       ADFGNGK+CIWVD+LDGG R +L EFAPFFEDPSIKKVWHNYSFDNHV
Sbjct: 456  FSIYSANSDVQAADFGNGKTCIWVDVLDGG-RGVLMEFAPFFEDPSIKKVWHNYSFDNHV 514

Query: 451  LENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNT 510
            +ENYG+KV+GF ADTMH+ARLWDSSR+ +GGYSLE LT DR+VM        +D+ K   
Sbjct: 515  IENYGIKVAGFRADTMHLARLWDSSRKIDGGYSLEGLTNDRRVMD----TVPEDLPKP-- 568

Query: 511  DEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLY 570
                 GKISMK IFGR+K++KDGS GK+ +I PV+ELQRE+RELWI YS+ DS++TL+LY
Sbjct: 569  -----GKISMKTIFGRKKVRKDGSEGKVVSIDPVKELQREDRELWICYSSLDSMSTLRLY 623

Query: 571  KSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKV 630
            +SLK+KL    W LDG   P  +M+DFY++YW PFG +LVKMETEGMLVDR YLSEIEK 
Sbjct: 624  ESLKRKLETRRWVLDG--CPRGTMYDFYEQYWCPFGALLVKMETEGMLVDRGYLSEIEKA 681

Query: 631  ARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKV 690
            A AE+E A ++FRKWASK+CPDAKYMNV SDTQ+RQLLFGG  N     E+ P  + FKV
Sbjct: 682  AIAERELAADKFRKWASKYCPDAKYMNVNSDTQIRQLLFGGIENRHKSGETWPQSKTFKV 741

Query: 691  PNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDC 750
             N E V  EGKKT SK+R I L SI  DL T+M+T +GWPS  GDAL++LA  I  EY  
Sbjct: 742  LNEENVATEGKKT-SKYRTIKLCSIVEDLKTDMFTPSGWPSASGDALRSLAGKIPTEYIY 800

Query: 751  VDG--AHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNF 808
              G    D +DS  +E  +   +  +  + F   +  +EAC AI+ALCE+CSIDSLISNF
Sbjct: 801  TMGDIQEDDEDSSGSENPDGDSSYGTAYEAFGGGKNGKEACHAIAALCEICSIDSLISNF 860

Query: 809  ILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            ILPLQG  +S   GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIRQAF+A PGNS
Sbjct: 861  ILPLQGDRISCAEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGNS 920

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH- 927
            LIVADYGQLELRILAHL NCKSMLDAFKAGGDFHSRTAMNMY HIR+AV   +VLLEWH 
Sbjct: 921  LIVADYGQLELRILAHLTNCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVHEKKVLLEWHP 980

Query: 928  --GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNE 985
              G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKT +GL+RDWKVSV+EA+ T+ LWY +
Sbjct: 981  QPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTALGLSRDWKVSVKEARDTLKLWYGD 1040

Query: 986  RQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAAD 1045
            R+EVL WQ+++KK +R    V+TLLGR+R FP +      QR HIERAAIN PVQGSAAD
Sbjct: 1041 RKEVLAWQKSQKKLAREKCEVYTLLGRSRHFPNLTQFGPGQRGHIERAAINAPVQGSAAD 1100

Query: 1046 VAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNL 1105
            VAMCAMLEI +NARLKELGW+LLLQVHDEVILEGPSESAEVAKAIVVECMSKPF+G N L
Sbjct: 1101 VAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFHGTNIL 1160

Query: 1106 RVDLSVDAKCAQNWYSAK 1123
            +VDL+VDAKCA++WY+AK
Sbjct: 1161 KVDLAVDAKCAKSWYAAK 1178


>gi|357162284|ref|XP_003579362.1| PREDICTED: uncharacterized protein LOC100823216 [Brachypodium
            distachyon]
          Length = 1031

 Score = 1101 bits (2847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/807 (67%), Positives = 633/807 (78%), Gaps = 26/807 (3%)

Query: 328  SEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPV 387
            S++ E  R  LA+ Y  V+VVD V +A+ VV +LT KYK  +HACDTEVA IDVKQETPV
Sbjct: 240  SKEAEDARKALATIYDKVLVVDTVKSARSVVQLLTTKYKSFIHACDTEVANIDVKQETPV 299

Query: 388  DHGEVICFSIY---SGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNY 444
             HGE+ CFSIY   S  EADFGNGK CIWVD+LDGG RD+L EF PFFEDPSI+KVWHNY
Sbjct: 300  GHGEITCFSIYCASSDAEADFGNGKKCIWVDVLDGG-RDVLMEFVPFFEDPSIRKVWHNY 358

Query: 445  SFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKD 504
            SFD+HV+ENYG+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D +VM    K  Q  
Sbjct: 359  SFDSHVIENYGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTNDSRVMGAVPKELQN- 417

Query: 505  MSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSI 564
                      +GK SMK IFGR+K+KKDG+ GKI++I  V+ LQRE+RELWISYS+ DS+
Sbjct: 418  ----------IGKRSMKTIFGRKKIKKDGTEGKITSIESVDILQREDRELWISYSSLDSM 467

Query: 565  NTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYL 624
            +TL+LY+SLK KL +  W  DG   P  SM+DFY+EYW+PFG ILVKMET GMLVDR YL
Sbjct: 468  STLRLYESLKSKLEKKHWTFDG--CPRGSMYDFYEEYWRPFGAILVKMETAGMLVDRSYL 525

Query: 625  SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPI 684
            SEIEKVA A+++ A ++F+KWASKHCPDAKYMNV SDTQ+RQL FGG  N     E LP 
Sbjct: 526  SEIEKVAVAQRKLAADKFQKWASKHCPDAKYMNVNSDTQIRQLFFGGIENRCKPGEFLPK 585

Query: 685  ERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLA--- 741
             R  KVPN +  + EGKK P K+R I L SI  DL T+++TA+GWPSV GDAL+ LA   
Sbjct: 586  SRAIKVPNDDNTVTEGKKAP-KYRTIELFSIVEDLKTDIFTASGWPSVSGDALRNLAGKL 644

Query: 742  -RNISAEYDCVDGAHDLDDSGCTEE-TEYKGAVASNNKIFATEQEAREACDAISALCEVC 799
              +++   D  +G     DS  +E+  E   +  +  + F   ++ +EAC AI+ALCE+C
Sbjct: 645  KTDLAYPMDDAEGDRYGSDSEISEDDVEDTTSYGTAYEAFGGGRKGKEACYAIAALCEIC 704

Query: 800  SIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQ 859
            SIDSLISNFILPLQG+ +S   GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIRQ
Sbjct: 705  SIDSLISNFILPLQGNRISCNEGRIHCSLNINTETGRLSARAPNLQNQPALEKDRYKIRQ 764

Query: 860  AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
            AF+A PGNSLIVADYGQLELRILAHLA+C+SMLDAFKAGGDFHSRTAMNMY HIR+AVE 
Sbjct: 765  AFVAAPGNSLIVADYGQLELRILAHLADCRSMLDAFKAGGDFHSRTAMNMYQHIRDAVEE 824

Query: 920  GQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAK 976
              VLLEWH   G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKT VGLARDWKVSV+EAK
Sbjct: 825  KTVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLARDWKVSVKEAK 884

Query: 977  KTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAIN 1036
             T+ LWY +R+EVLTWQ  +++ +     V+TLLGR+RRFP +   +  QR HIERAAIN
Sbjct: 885  DTLKLWYRDRKEVLTWQMKQRELAEEKCEVYTLLGRSRRFPNMAYASPGQRGHIERAAIN 944

Query: 1037 TPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMS 1096
             PVQGSAADVAMCAMLEI +N RLKELGW LLLQVHDEVILEGPSESA+VAK IVVECMS
Sbjct: 945  APVQGSAADVAMCAMLEIDRNTRLKELGWTLLLQVHDEVILEGPSESADVAKGIVVECMS 1004

Query: 1097 KPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            KPF G N L VDL+VDAKCAQNWY+AK
Sbjct: 1005 KPFYGTNILTVDLAVDAKCAQNWYAAK 1031


>gi|125560330|gb|EAZ05778.1| hypothetical protein OsI_28011 [Oryza sativa Indica Group]
          Length = 1033

 Score = 1071 bits (2770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/814 (65%), Positives = 628/814 (77%), Gaps = 33/814 (4%)

Query: 322  ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
            ++E++N+ KL      LA+ Y  V+VVDNV +A+ VV +LT KYK  +HACDTEVA IDV
Sbjct: 241  STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 294

Query: 382  KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
            K+ETPV HGEVICFSI SG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSIK
Sbjct: 295  KEETPVGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIK 353

Query: 439  KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
            KVWHNYSFD+HV+EN G+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D +VM    
Sbjct: 354  KVWHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTNDHRVMD--- 410

Query: 499  KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
             A  KD+ K        GK+SMK IFGR+K++KDGS GK  +I PVE+LQRE+RELWI Y
Sbjct: 411  -AVVKDIPK-------TGKVSMKTIFGRKKVRKDGSEGKTISIEPVEKLQREDRELWICY 462

Query: 559  SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
            S+ DS++TLKLY+SLK KL    W  D    P  +M+DFY+EYW+PFG +LVKMETEG+L
Sbjct: 463  SSLDSMSTLKLYESLKNKLEAKEWIFDD--CPRGTMYDFYEEYWRPFGALLVKMETEGVL 520

Query: 619  VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDD 678
            VDR YLSEIEK A  E+E A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG  N    
Sbjct: 521  VDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIENRNKR 580

Query: 679  SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALK 738
             E+ P  + FKVPN EG+  EGKKTP K R I L +I  DL  +M+T TGWPSV GD L+
Sbjct: 581  GETWPQSKTFKVPNDEGITTEGKKTP-KSRTIKLFTIVEDLKIDMFTPTGWPSVSGDVLR 639

Query: 739  TLARNI-SAEYDCVDGAHDLDDSGCT-----EETEYKGAVASNNKIFATEQEAREACDAI 792
            +LA  I +     +D   + D+ G +     ++ E      +  + F    + REAC AI
Sbjct: 640  SLAGKIPTNRIYKIDDGQEFDEDGSSLELPEQDIEDTSLYGTAYEAFGGGNKGREACHAI 699

Query: 793  SALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEK 852
            +ALCEV SID LIS FI+PLQG  +S K GR+HCSLNINTETGRLSAR PNLQNQPALEK
Sbjct: 700  AALCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNINTETGRLSARTPNLQNQPALEK 759

Query: 853  DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
            DRYKIRQAF+A PGN+LIVADYGQLELRILAHL NCKSML+AFKAGGDFHSRTAMNMY H
Sbjct: 760  DRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQH 819

Query: 913  IRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +R+AVE  +VLLEWH   G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKT VGL+ DWK
Sbjct: 820  VRDAVEEKKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWK 879

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            V V EA+ T+ LWY +R+EV  WQ+ +K  +     V+TLLGR+R+FP +      Q+ H
Sbjct: 880  VEVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAGPGQKGH 939

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
            +ERAAIN PVQGSAADVAMCAMLEI +NARLKELGW+LLLQVHDEVILEGP+ESAE AK 
Sbjct: 940  VERAAINAPVQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKT 999

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            IVVECMSKPF G N L+VDL+VDAK A++WY+AK
Sbjct: 1000 IVVECMSKPFYGTNILKVDLAVDAKYAKSWYAAK 1033


>gi|115475031|ref|NP_001061112.1| Os08g0175300 [Oryza sativa Japonica Group]
 gi|40253292|dbj|BAD05227.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|40253609|dbj|BAD05554.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|113623081|dbj|BAF23026.1| Os08g0175300 [Oryza sativa Japonica Group]
 gi|215737038|dbj|BAG95967.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640001|gb|EEE68133.1| hypothetical protein OsJ_26226 [Oryza sativa Japonica Group]
          Length = 1033

 Score = 1070 bits (2766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/814 (65%), Positives = 628/814 (77%), Gaps = 33/814 (4%)

Query: 322  ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
            ++E++N+ KL      LA+ Y  V+VVDNV +A+ VV +LT KYK  +HACDTEVA IDV
Sbjct: 241  STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 294

Query: 382  KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
            K+ETPV HGEVICFSI SG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDP IK
Sbjct: 295  KEETPVGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPFIK 353

Query: 439  KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
            KVWHNYSFD HV+EN G+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D +VM    
Sbjct: 354  KVWHNYSFDIHVIENCGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTNDYRVMD--- 410

Query: 499  KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
             A  KD+ K        GK+SMK IFGR+K++KDGS GK  +I PVE+LQRE+RELWI Y
Sbjct: 411  -AVLKDIPK-------TGKVSMKTIFGRKKVRKDGSEGKTISIEPVEKLQREDRELWICY 462

Query: 559  SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
            S+ DS++TLKLY+SLK KL    W  D    P  +M+DFY+EYW+PFG +LVKMETEG+L
Sbjct: 463  SSLDSMSTLKLYESLKNKLEAKEWIFDD--CPRGTMYDFYEEYWRPFGALLVKMETEGVL 520

Query: 619  VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDD 678
            VDR YLSEIEK A  E+E A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG  N    
Sbjct: 521  VDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIENRNKR 580

Query: 679  SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALK 738
             E+ P  + FKVPN EG+  EGKKTP K R I L +I  DL  +M+T TGWPSV GD L+
Sbjct: 581  GETWPQSKTFKVPNDEGIATEGKKTP-KSRTIKLFTIVEDLKIDMFTPTGWPSVSGDVLR 639

Query: 739  TLARNISAEYDC-VDGAHDLDDSGCT-----EETEYKGAVASNNKIFATEQEAREACDAI 792
            +LA  I  ++   +D   + D+ G +     ++ E      +  + F   ++ REAC AI
Sbjct: 640  SLAGKIPTDHIYKIDDGQEFDEDGSSLELPEQDIEDTSPYGTAYEAFGGGKKGREACHAI 699

Query: 793  SALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEK 852
            +ALCEV SID LIS FI+PLQG  +S K GR+HCSLNINTETGRLSAR PNLQNQPALEK
Sbjct: 700  AALCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNINTETGRLSARTPNLQNQPALEK 759

Query: 853  DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
            DRYKIR AF+A PGN+LIVADYGQLELRILAHL NCKSML+AFKAGGDFHSRTAMNMY H
Sbjct: 760  DRYKIRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQH 819

Query: 913  IRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +R+AVE  +VLLEWH   G+DKPPVPLLKDAF +ERRKAKMLNFSIAYGKT VGL+ DWK
Sbjct: 820  VRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWK 879

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            VSV EA+ T+ LWY +R+EV  WQ+ +K  +     V+TLLGR+R+FP +      Q+ H
Sbjct: 880  VSVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAGPGQKGH 939

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
            +ERAAIN PVQGSAADVAMCAMLEI +NARLKELGW+LLLQVHDEVILEGP+ESAE AK 
Sbjct: 940  VERAAINAPVQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKT 999

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            IVVECMSKPF G N L+VDL+VDAK A++WY+AK
Sbjct: 1000 IVVECMSKPFYGTNILKVDLAVDAKYAKSWYAAK 1033


>gi|19912795|dbj|BAB40805.2| PolI-like DNA polymerase [Oryza sativa]
          Length = 976

 Score = 1069 bits (2765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/814 (65%), Positives = 627/814 (77%), Gaps = 33/814 (4%)

Query: 322  ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
            ++E++N+ KL      LA+ Y  V+VVDNV +A+ VV +LT KYK  +HACDTEVA IDV
Sbjct: 184  STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 237

Query: 382  KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
            K+ETPV HGEVICFSI SG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDP IK
Sbjct: 238  KEETPVGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPFIK 296

Query: 439  KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
            KVWHNYSFD HV+EN G+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D +VM    
Sbjct: 297  KVWHNYSFDIHVIENCGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTNDYRVMD--- 353

Query: 499  KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
             A  KD+ K        GK+SMK IFGR+K++KDGS GK  +I PVE+LQRE+RELWI Y
Sbjct: 354  -AVLKDIPK-------TGKVSMKTIFGRKKVRKDGSEGKTISIEPVEKLQREDRELWICY 405

Query: 559  SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
            S+ DS++TLKLY+SLK KL    W  D    P  +M+DFY+EYW+PFG +LVKMETEG+L
Sbjct: 406  SSLDSMSTLKLYESLKNKLEAKEWIFDD--CPRGTMYDFYEEYWRPFGALLVKMETEGVL 463

Query: 619  VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDD 678
            VDR YLSEIEK A  E+E A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG  N    
Sbjct: 464  VDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIENRNKR 523

Query: 679  SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALK 738
             E+ P  + FKVPN EG+  EGKKTP K R I L +I  DL  +M+T TGWPSV GD L+
Sbjct: 524  GETWPQSKTFKVPNDEGIATEGKKTP-KSRTIKLFTIVEDLKIDMFTPTGWPSVSGDVLR 582

Query: 739  TLARNISAEYDC-VDGAHDLDDSGCT-----EETEYKGAVASNNKIFATEQEAREACDAI 792
            +LA  I  ++   +D   + D+ G +     ++ E      +  + F   ++ REAC AI
Sbjct: 583  SLAGKIPTDHIYKIDDGQEFDEDGSSLELPEQDIEDTSPYGTAYEAFGGGKKGREACHAI 642

Query: 793  SALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEK 852
            +ALCEV SID LIS FI+PLQG  +S K GR+HCSLNINTETGRLSAR PNLQNQP LEK
Sbjct: 643  AALCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNINTETGRLSARTPNLQNQPVLEK 702

Query: 853  DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
            DRYKIR AF+A PGN+LIVADYGQLELRILAHL NCKSML+AFKAGGDFHSRTAMNMY H
Sbjct: 703  DRYKIRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQH 762

Query: 913  IRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +R+AVE  +VLLEWH   G+DKPPVPLLKDAF +ERRKAKMLNFSIAYGKT VGL+ DWK
Sbjct: 763  VRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWK 822

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            VSV EA+ T+ LWY +R+EV  WQ+ +K  +     V+TLLGR+R+FP +      Q+ H
Sbjct: 823  VSVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAGPGQKGH 882

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
            +ERAAIN PVQGSAADVAMCAMLEI +NARLKELGW+LLLQVHDEVILEGP+ESAE AK 
Sbjct: 883  VERAAINAPVQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKT 942

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            IVVECMSKPF G N L+VDL+VDAK A++WY+AK
Sbjct: 943  IVVECMSKPFYGTNILKVDLAVDAKYAKSWYAAK 976


>gi|39545749|emb|CAE04166.3| OSJNBb0034I13.15 [Oryza sativa Japonica Group]
          Length = 1000

 Score = 1045 bits (2701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/799 (65%), Positives = 616/799 (77%), Gaps = 57/799 (7%)

Query: 335  RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
            R  LA+ Y  V+VVDNV +A+ VV +LT+KYK+ +HACDTEVA IDVKQETPV HGEVIC
Sbjct: 249  RKALATVYDKVLVVDNVKSARSVVQLLTSKYKNFIHACDTEVANIDVKQETPVSHGEVIC 308

Query: 395  FSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
            FSIYSG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSI+KVWHNYSFD+HV+
Sbjct: 309  FSIYSGNSDAEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIRKVWHNYSFDSHVI 367

Query: 452  ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
            ENYG+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D +VM    K  QK        
Sbjct: 368  ENYGIKVAGFHADTMHLARLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQK-------- 419

Query: 512  EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYK 571
               +GK SMK IFG +K+KKDGSAGKI ++ PVE LQR++RE+WI YS+ DS++TL+LY+
Sbjct: 420  ---IGKRSMKTIFGWKKIKKDGSAGKIISMEPVEVLQRDDREMWICYSSLDSMSTLRLYE 476

Query: 572  SLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVA 631
            SLK KL +  W  DG   P  SM+DFY+EYW+PFG +LVKMET GMLVDR YLSEIEKVA
Sbjct: 477  SLKSKLEKKHWTFDG--CPRGSMYDFYEEYWRPFGALLVKMETAGMLVDRGYLSEIEKVA 534

Query: 632  RAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVP 691
             A+++ A ++FRKWASK+CPDAKYMNV SDTQ+RQL FGG  N     E+LP  R  KVP
Sbjct: 535  VAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIENRCKPGETLPKSRTIKVP 594

Query: 692  NTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCV 751
            N   +IAEGKKTP K+  I L SI  DL T+++TA+GWPSV GDAL++LA  +  +    
Sbjct: 595  NDGSLIAEGKKTP-KYCTIELFSIVEDLKTDLFTASGWPSVSGDALRSLAGKLPTDLVYT 653

Query: 752  DGAHDLDDSGCTEETEY----KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISN 807
                + DDSG +E +E+      +  +  + F   ++ +EAC AI+ALCE+CSIDSLISN
Sbjct: 654  TDDVEDDDSGDSEISEHDLNDTASYGTAYEAFGGGKKGKEACHAIAALCEICSIDSLISN 713

Query: 808  FILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN 867
            FILP                                LQNQPALEKDRYKIRQAF+A PGN
Sbjct: 714  FILP--------------------------------LQNQPALEKDRYKIRQAFVAAPGN 741

Query: 868  SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH 927
            SLIVADYGQLELRILAHLA+CKSMLDAFKAGGDFHSRTAMNMY HIR+AVE  +VLLEWH
Sbjct: 742  SLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEKKVLLEWH 801

Query: 928  ---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYN 984
               G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKTPVGLARDWKVSV+EAK T+ LWY 
Sbjct: 802  PQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLWYR 861

Query: 985  ERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAA 1044
            +R+EVL WQ  +K+ ++    V+TLLGR+RRFP +   T  QR HIERAAIN PVQGSAA
Sbjct: 862  DRKEVLAWQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQRGHIERAAINAPVQGSAA 921

Query: 1045 DVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNN 1104
            DVAMCAMLEI +NARLKELGW+LLLQVHDEVILEGP+ESA++AK+IVVECMSKPF G N 
Sbjct: 922  DVAMCAMLEIDRNARLKELGWRLLLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNI 981

Query: 1105 LRVDLSVDAKCAQNWYSAK 1123
            L V+L+VDAKCAQNWY+AK
Sbjct: 982  LNVELAVDAKCAQNWYAAK 1000


>gi|40253294|dbj|BAD05229.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|40253611|dbj|BAD05556.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
          Length = 1035

 Score = 1040 bits (2689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/820 (63%), Positives = 625/820 (76%), Gaps = 39/820 (4%)

Query: 322  ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
            ++E++N+ KL      LA+ Y  V+VVDNV +A+ VV +LT KYK  +HACDTEVA IDV
Sbjct: 237  STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 290

Query: 382  KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
            K+ETPV HGEVICFSIYSG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSIK
Sbjct: 291  KEETPVGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIK 349

Query: 439  KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
            KVWHNYSFD+HV+EN G+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D ++M+   
Sbjct: 350  KVWHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRADGGYSLEGLTNDHRIMN--- 406

Query: 499  KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
             A  KD+ K        GK+SMK IFGR+ ++K+GS GK  +I PV++LQRE+RELWI Y
Sbjct: 407  -AVLKDIHK-------TGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDRELWICY 458

Query: 559  SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
            S+ DS++TLKLY+SLK KL    W  DG   P  +M+DFY+EYW+PFG +LVKMETEGM 
Sbjct: 459  SSLDSMSTLKLYESLKNKLEAKEWIFDG--CPRGTMYDFYEEYWRPFGALLVKMETEGMF 516

Query: 619  VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDD 678
            VDR YLSEIEK A  E++ A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG  N    
Sbjct: 517  VDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIKNRNKP 576

Query: 679  SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLP-----TEMYTATGWPSVG 733
             E+ P  + FKVPN E +  EGKK P K R I L +I  DL       +  T TGW  V 
Sbjct: 577  GETWPQSKAFKVPNDESIATEGKKIP-KSRTIKLFTIVEDLKLFTTEGKKTTKTGWLKVR 635

Query: 734  GDALKTLARNISAE--YDCVDGAHDLDDSGCT-----EETEYKGAVASNNKIFATEQEAR 786
            GD L +LA  I  +  Y   D   + D+ G +     ++ E      +  + F   ++ R
Sbjct: 636  GDVLWSLAGKIPTDHIYKIDDDGQEFDEDGSSVELPEQDIEDTSPYGTAYEAFGGGKKGR 695

Query: 787  EACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQN 846
            EAC AI+ALCEV SID LIS FI+PLQG ++S K GR+HCSLNINTETGRLSAR P+LQN
Sbjct: 696  EACHAIAALCEVFSIDKLISGFIVPLQGDHISCKEGRIHCSLNINTETGRLSARTPSLQN 755

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
            QPALEKDRYKIRQAF+A PGN+LIVADYGQLELRILAHL NCKSML+AFKAGGDFHSRTA
Sbjct: 756  QPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTA 815

Query: 907  MNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVG 963
            MNMY H+R+AVE  +VLLEWH   G+DKPPVPLLKDAF +ERRKAKMLNFSIAYGKT VG
Sbjct: 816  MNMYQHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVG 875

Query: 964  LARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLT 1023
            L++DW V V EA+ T+ LW+ +R+E+  WQ+ +K  +     V+TLLGR+R+FP +    
Sbjct: 876  LSQDWNVEVREARDTLKLWHRDRKEISAWQKKQKALAFEKCEVYTLLGRSRQFPNMTHAG 935

Query: 1024 RSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSES 1083
              Q++H+ERAAIN PVQGSAADVAMCAMLEI +NARLKELGW+LLLQVHDEVILEGP+ES
Sbjct: 936  PGQKSHVERAAINAPVQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTES 995

Query: 1084 AEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            AE AKAIVVECMSKPF G N L+VDL+VDAK A++WY+AK
Sbjct: 996  AEEAKAIVVECMSKPFYGTNILKVDLAVDAKYAKSWYAAK 1035


>gi|222640002|gb|EEE68134.1| hypothetical protein OsJ_26228 [Oryza sativa Japonica Group]
          Length = 982

 Score = 1040 bits (2688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/820 (63%), Positives = 625/820 (76%), Gaps = 39/820 (4%)

Query: 322  ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
            ++E++N+ KL      LA+ Y  V+VVDNV +A+ VV +LT KYK  +HACDTEVA IDV
Sbjct: 184  STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 237

Query: 382  KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
            K+ETPV HGEVICFSIYSG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSIK
Sbjct: 238  KEETPVGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIK 296

Query: 439  KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
            KVWHNYSFD+HV+EN G+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D ++M+   
Sbjct: 297  KVWHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRADGGYSLEGLTNDHRIMN--- 353

Query: 499  KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
             A  KD+ K        GK+SMK IFGR+ ++K+GS GK  +I PV++LQRE+RELWI Y
Sbjct: 354  -AVLKDIHK-------TGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDRELWICY 405

Query: 559  SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
            S+ DS++TLKLY+SLK KL    W  DG   P  +M+DFY+EYW+PFG +LVKMETEGM 
Sbjct: 406  SSLDSMSTLKLYESLKNKLEAKEWIFDG--CPRGTMYDFYEEYWRPFGALLVKMETEGMF 463

Query: 619  VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDD 678
            VDR YLSEIEK A  E++ A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG  N    
Sbjct: 464  VDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIKNRNKP 523

Query: 679  SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLP-----TEMYTATGWPSVG 733
             E+ P  + FKVPN E +  EGKK P K R I L +I  DL       +  T TGW  V 
Sbjct: 524  GETWPQSKAFKVPNDESIATEGKKIP-KSRTIKLFTIVEDLKLFTTEGKKTTKTGWLKVR 582

Query: 734  GDALKTLARNISAE--YDCVDGAHDLDDSGCT-----EETEYKGAVASNNKIFATEQEAR 786
            GD L +LA  I  +  Y   D   + D+ G +     ++ E      +  + F   ++ R
Sbjct: 583  GDVLWSLAGKIPTDHIYKIDDDGQEFDEDGSSVELPEQDIEDTSPYGTAYEAFGGGKKGR 642

Query: 787  EACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQN 846
            EAC AI+ALCEV SID LIS FI+PLQG ++S K GR+HCSLNINTETGRLSAR P+LQN
Sbjct: 643  EACHAIAALCEVFSIDKLISGFIVPLQGDHISCKEGRIHCSLNINTETGRLSARTPSLQN 702

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
            QPALEKDRYKIRQAF+A PGN+LIVADYGQLELRILAHL NCKSML+AFKAGGDFHSRTA
Sbjct: 703  QPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTA 762

Query: 907  MNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVG 963
            MNMY H+R+AVE  +VLLEWH   G+DKPPVPLLKDAF +ERRKAKMLNFSIAYGKT VG
Sbjct: 763  MNMYQHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVG 822

Query: 964  LARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLT 1023
            L++DW V V EA+ T+ LW+ +R+E+  WQ+ +K  +     V+TLLGR+R+FP +    
Sbjct: 823  LSQDWNVEVREARDTLKLWHRDRKEISAWQKKQKALAFEKCEVYTLLGRSRQFPNMTHAG 882

Query: 1024 RSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSES 1083
              Q++H+ERAAIN PVQGSAADVAMCAMLEI +NARLKELGW+LLLQVHDEVILEGP+ES
Sbjct: 883  PGQKSHVERAAINAPVQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTES 942

Query: 1084 AEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            AE AKAIVVECMSKPF G N L+VDL+VDAK A++WY+AK
Sbjct: 943  AEEAKAIVVECMSKPFYGTNILKVDLAVDAKYAKSWYAAK 982


>gi|218200555|gb|EEC82982.1| hypothetical protein OsI_28013 [Oryza sativa Indica Group]
          Length = 1028

 Score = 1039 bits (2686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/819 (63%), Positives = 623/819 (76%), Gaps = 38/819 (4%)

Query: 322  ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
            ++E++N+ KL      LA+ Y  V+VVDNV +A+ VV +LT KYK  +HACDTEVA IDV
Sbjct: 231  STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 284

Query: 382  KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
            K+ETPV HGEVICFSI SG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSIK
Sbjct: 285  KEETPVGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIK 343

Query: 439  KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
            KVWHNYSFDNHV+EN G+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D ++M+   
Sbjct: 344  KVWHNYSFDNHVIENCGIKVAGFHADTMHLARLWDSSRRADGGYSLEGLTNDHRIMN--- 400

Query: 499  KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
             A  KD+ K        GK+SMK IFGR+K++K+GS GK  +I PVE+LQRE+RELWI Y
Sbjct: 401  -AVLKDIHK-------TGKVSMKTIFGRKKVRKNGSEGKTISIEPVEKLQREDRELWICY 452

Query: 559  SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
            S+ DS++TLKLY+SLK KL    W  DG   P  +M+DFY+EYW+PFG +LVKMETEGML
Sbjct: 453  SSLDSMSTLKLYESLKNKLEAKEWIFDG--CPRGTMYDFYEEYWRPFGALLVKMETEGML 510

Query: 619  VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDD 678
            VDR YLSEIEK A  E++ A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG  N    
Sbjct: 511  VDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIKNRNKP 570

Query: 679  SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLP-----TEMYTATGWPSVG 733
             E+ P  + FKVPN E +  EGKKT SK R I L +I  DL       +  T TGW  V 
Sbjct: 571  GETWPQSKTFKVPNDESIATEGKKT-SKSRTIKLFTIVEDLKLFTTEGKKTTKTGWLKVR 629

Query: 734  GDALKTLARNISAEYDC-VDGAHDLDDSGCT-----EETEYKGAVASNNKIFATEQEARE 787
            GD L +LA  I  ++   +D   + D+ G +     ++ E      +  + F   ++ RE
Sbjct: 630  GDVLWSLAGKIPTDHIYKIDDGQEFDEDGSSVELPEQDIENTSPYGTAYEAFGGGKKGRE 689

Query: 788  ACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQ 847
            AC AI+ALCE  SID LIS FI+PLQG  +S K GR+HCSLNINTETGRLSAR PNLQNQ
Sbjct: 690  ACHAIAALCEAFSIDKLISGFIIPLQGDRISCKEGRIHCSLNINTETGRLSARTPNLQNQ 749

Query: 848  PALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
            PALEKDRYKIRQAF+A PGN+LIVADYGQLELRILAHL NCKSML+AFKAGGDFHSRTAM
Sbjct: 750  PALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAM 809

Query: 908  NMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGL 964
            NMY H+R+AVE  +VLLEWH   G+DKPPVPLLKD F +ERRKAKMLNFSIAYGKT VGL
Sbjct: 810  NMYQHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDTFGAERRKAKMLNFSIAYGKTAVGL 869

Query: 965  ARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTR 1024
            ++DW V V EA+ T+ LWY +R+EV  WQ+ +K  +     V+TLLGR+R+FP +     
Sbjct: 870  SQDWNVEVREARDTLKLWYRDRKEVSAWQKKQKALALEKCEVYTLLGRSRQFPNMTHAGP 929

Query: 1025 SQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESA 1084
             Q+ H+ERAAIN P QGSAADVAMCAMLEI +NARLKELGW+LLLQVHDEVILEGP+ESA
Sbjct: 930  GQKGHVERAAINAPGQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESA 989

Query: 1085 EVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            E AK+IVVECMSKPF G N L+VDL+VDAK A++WY+AK
Sbjct: 990  EEAKSIVVECMSKPFYGTNILKVDLAVDAKYAKSWYAAK 1028


>gi|242074498|ref|XP_002447185.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
 gi|241938368|gb|EES11513.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
          Length = 992

 Score = 1028 bits (2659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/799 (64%), Positives = 607/799 (75%), Gaps = 61/799 (7%)

Query: 335  RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
            R  LA+ Y  V+VVDNV +A+ VV +LT KY++ +HACDTEV  IDVKQETPV HG+V C
Sbjct: 245  RKALATIYDKVLVVDNVMSARSVVQLLTTKYRNYIHACDTEV-DIDVKQETPVGHGKVTC 303

Query: 395  FSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
            FSIYSG    EADFGNGK+CIWVD+LDGG  D+L EFAPFFED SI+KVWHNYSFD+HV+
Sbjct: 304  FSIYSGTKGAEADFGNGKTCIWVDVLDGGP-DVLMEFAPFFEDSSIRKVWHNYSFDSHVI 362

Query: 452  ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
            ENYG+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D +VM    K  +K        
Sbjct: 363  ENYGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTNDHRVMGVVSKELRK-------- 414

Query: 512  EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYK 571
               +GK SMK IFGR+K+KKDGS GKI+ I PVE LQRE+RELWI YS+ DS++TLKLY+
Sbjct: 415  ---IGKRSMKTIFGRKKIKKDGSEGKITAIEPVEILQREDRELWICYSSLDSMSTLKLYE 471

Query: 572  SLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVA 631
            SLK KL    W  DG   P  S++DFY+EYW+PFG ILVKMET GMLVDR YLSEIEKVA
Sbjct: 472  SLKSKLERKPWTFDG--CPRGSLYDFYEEYWRPFGAILVKMETAGMLVDRAYLSEIEKVA 529

Query: 632  RAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVP 691
             A+++ A ++FR WASK+CPDAKYMNV SDTQ+RQL FGG  N     + LP  +  KVP
Sbjct: 530  VAQRKLAADKFRNWASKYCPDAKYMNVNSDTQIRQLFFGGIENICKPGDFLPKSKAIKVP 589

Query: 692  NTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAE--YD 749
            N E  ++EGKK P K+R I L +I  DL T+++TA+GWPSV GDAL+ LA  + ++  Y 
Sbjct: 590  NDETAVSEGKKVP-KYRTIELFNIVEDLKTDIFTASGWPSVSGDALRNLAGKVPSDLVYS 648

Query: 750  CVD--GAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISN 807
              D  G+H  + S C  + E   +  +    F   +E +EAC AI+ALCE+CSIDSLISN
Sbjct: 649  TDDECGSHS-EISNC--DLEDTSSYGTAYDAFGGGKEGKEACHAIAALCEICSIDSLISN 705

Query: 808  FILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN 867
            FILP                                LQNQPALEKDRYKIRQAF+A PGN
Sbjct: 706  FILP--------------------------------LQNQPALEKDRYKIRQAFVAAPGN 733

Query: 868  SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH 927
            +LIVADYGQLELRILAHLA+CKSMLDAF+AGGDFHSRTAMNMYPHIR AV+  +V+LEWH
Sbjct: 734  TLIVADYGQLELRILAHLADCKSMLDAFRAGGDFHSRTAMNMYPHIREAVDEEKVILEWH 793

Query: 928  ---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYN 984
               G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKTP GLARDWKVSV+EAK T+ LWY+
Sbjct: 794  PQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPHGLARDWKVSVKEAKDTLKLWYS 853

Query: 985  ERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAA 1044
            +R+EVL WQ  +K+ +   + V+TLLGR+RRFP +   T  QR HIERAAIN PVQGSAA
Sbjct: 854  DRKEVLAWQMKQKQLAHEKSEVYTLLGRSRRFPNMAHATSGQRGHIERAAINAPVQGSAA 913

Query: 1045 DVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNN 1104
            DVAMCAMLEI +N RLKELGW LLLQVHDEVILEGPSESAE+AK+IVVECMSKPF G N 
Sbjct: 914  DVAMCAMLEIDRNTRLKELGWTLLLQVHDEVILEGPSESAELAKSIVVECMSKPFYGTNI 973

Query: 1105 LRVDLSVDAKCAQNWYSAK 1123
            L+VDL+VDAKCAQNWY+AK
Sbjct: 974  LKVDLAVDAKCAQNWYAAK 992


>gi|357139699|ref|XP_003571415.1| PREDICTED: uncharacterized protein LOC100833898 [Brachypodium
            distachyon]
          Length = 986

 Score =  994 bits (2570), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/805 (61%), Positives = 606/805 (75%), Gaps = 41/805 (5%)

Query: 335  RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
            R  LA  Y  V+VVD++ +AK VV +LT KYK+ VHAC TEV  IDVK+ETPVDHGEVIC
Sbjct: 207  RKALAGIYDKVLVVDSIESAKNVVQLLTTKYKNFVHACGTEVTNIDVKEETPVDHGEVIC 266

Query: 395  FSIYS---GPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
            FSIYS   G +ADFGNGK+CIWVD+LDG  RD+L EFAPFFEDPSIKKVWHNYSFD+HV+
Sbjct: 267  FSIYSENSGSQADFGNGKTCIWVDVLDGQ-RDVLMEFAPFFEDPSIKKVWHNYSFDSHVI 325

Query: 452  ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
            EN  +KV GFHADT H+ARLW+S+R+T+GGYSLE L+ D +VM++      KD+S+    
Sbjct: 326  ENCRIKVDGFHADTRHLARLWNSNRKTDGGYSLEGLSNDHRVMTD----VPKDLSE---- 377

Query: 512  EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYK 571
               +GK S K IFG++K++KDG+ GKI  + PVE+LQRE+R +WI YS+ DS+NTLKLY+
Sbjct: 378  ---IGKASKKTIFGKKKIRKDGAEGKIVNVEPVEKLQREDRNMWICYSSRDSMNTLKLYE 434

Query: 572  SLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVA 631
            SLK KL    W  DG   P  +M+DFY+EY +PFG +LVKME EGMLVDR YLSEIEK+A
Sbjct: 435  SLKSKLEAKEWIFDG--CPRGTMYDFYEEYLRPFGALLVKMEREGMLVDRGYLSEIEKIA 492

Query: 632  RAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVP 691
             AE+  A ++FRKWASK+CPDAKYMN+ SD Q+ QL F G+ N     E+LP  + F+VP
Sbjct: 493  VAERNLAADKFRKWASKYCPDAKYMNINSDAQILQLFFAGRENRDTPGETLPQSKTFRVP 552

Query: 692  NTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISA----- 746
            N + V  EGK+T SKFR I L  I V+ P   +++    SV  D LKT    I       
Sbjct: 553  NDQSVAPEGKRT-SKFRTIKLCGI-VENPEVTFSS----SVSLDTLKTWPGKIPTDQIYR 606

Query: 747  -----EYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSI 801
                 E+D      +L D    E + Y  A     ++F   ++ +EAC AI+AL E  SI
Sbjct: 607  TDDDQEHDEYSNGSELPDQDVEEVSLYGTAY----EVFGGGKKGKEACHAIAALFETRSI 662

Query: 802  DSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAF 861
              LIS+FI+PLQ  ++S K GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIRQAF
Sbjct: 663  AKLISSFIVPLQEDHISCKEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRQAF 722

Query: 862  IAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
            +A PGNSL+VADYGQLELRILAHL NCKSMLDAFKAGGDFHSRTAMNMY HIR+AV   +
Sbjct: 723  VAAPGNSLVVADYGQLELRILAHLTNCKSMLDAFKAGGDFHSRTAMNMYEHIRDAVHEKK 782

Query: 922  VLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKT 978
            VLLEWH   G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKT  GL+ DWKV+V+EA+ T
Sbjct: 783  VLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAKGLSDDWKVTVDEARDT 842

Query: 979  VDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTP 1038
            + LWY +R+EV  WQ+ +K+  R    V+TLLGR+R FP +     S++  +ERAAIN P
Sbjct: 843  LKLWYRDRKEVSAWQKRQKELVREKCEVYTLLGRSRHFPNMTHAGSSKKG-VERAAINAP 901

Query: 1039 VQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKP 1098
            VQGSAADVAMCAMLEI +N RLKELGW+LLLQVHDEVILEGP+ESAE A+AIVVECMSKP
Sbjct: 902  VQGSAADVAMCAMLEIERNVRLKELGWRLLLQVHDEVILEGPTESAETARAIVVECMSKP 961

Query: 1099 FNGKNNLRVDLSVDAKCAQNWYSAK 1123
            F G N L+V+L+VDAKC ++WY+AK
Sbjct: 962  FYGTNILKVELAVDAKCVKSWYAAK 986


>gi|168066821|ref|XP_001785330.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663085|gb|EDQ49871.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 792

 Score =  976 bits (2523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/799 (60%), Positives = 603/799 (75%), Gaps = 28/799 (3%)

Query: 346  MVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADF 405
            MV+D+V  AK VV  L  +YK  VHACDTEVA+IDVK+E+PV HG + CFSIY GP A+F
Sbjct: 1    MVIDSVDKAKMVVKQLMREYKDAVHACDTEVAEIDVKKESPVGHGRMTCFSIYCGPSANF 60

Query: 406  GNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADT 465
            GNGK+ +WVD+LDGG   +L  F  +FEDPSIKKVWHNYSFD H+L  +G+   GF+ADT
Sbjct: 61   GNGKNRLWVDVLDGGD-GILEVFRRYFEDPSIKKVWHNYSFDKHILSRHGIHPQGFYADT 119

Query: 466  MHMARLWDSSRR-TEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIF 524
            MH+ARL DS+RR  +GGYSLE L+ D KVM      Y   +++ + D   +GK SMK++F
Sbjct: 120  MHLARLHDSARRGAKGGYSLEVLSADEKVMD----GYLGHLTEED-DITLVGKKSMKELF 174

Query: 525  GRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINTLKLYKSLKKKLLEMSW 582
            G+  LKKDGS GKI TI PV+ELQR  E R+ WI YS FD++ T +L+ SL+ KL    W
Sbjct: 175  GKANLKKDGSPGKIKTIPPVDELQRDGELRDAWIHYSTFDTVCTWRLFVSLQHKLSNTPW 234

Query: 583  KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRF 642
             +      G SM+DFY++YW+PFGE+LV+ME +GMLVD ++L+ +EKVARA+QE +V+RF
Sbjct: 235  NVVDLKEKG-SMYDFYEKYWRPFGEVLVQMEADGMLVDCDHLATVEKVARAQQEISVSRF 293

Query: 643  RKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKK 702
            RKWA+K+CPDA  MNVGSD Q+RQ LFGG  N K+  + LP+ER+F VPNT+G I EGKK
Sbjct: 294  RKWAAKYCPDAAMMNVGSDAQIRQFLFGGTANRKNAEQVLPMERVFSVPNTDGFIEEGKK 353

Query: 703  TPSKFRNITLRSIG---VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDG---AHD 756
               + R I +R +    + +P E YT++GWP+VGG A+K LA  ++ +Y  ++      D
Sbjct: 354  VAKQTRPIVIRGLANFNIRIPVETYTSSGWPAVGGAAIKALAGKVAIDYAALEEDSEVED 413

Query: 757  LDDSGCTE--------ETEYKGAVASNNKI---FATEQEAREACDAISALCEVCSIDSLI 805
            +DD   +E        ETE++  ++   K    F    E +EAC A++ALCEV SI++L+
Sbjct: 414  MDDIEESESLLTSAGVETEHEEDLSVYGKAYQAFGGGLEGKEACMALAALCEVASINTLL 473

Query: 806  SNFILPLQGSNV-SGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAV 864
            SNFI PLQG+++ S  +GRVHCSLNINTETGRLSARRP+LQNQPALEKDRYKIRQAF+A 
Sbjct: 474  SNFIEPLQGNDIKSASDGRVHCSLNINTETGRLSARRPSLQNQPALEKDRYKIRQAFVAA 533

Query: 865  PGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLL 924
            PG SL+VADYGQLELR+LAHLA+CKSM  AFKAGGDFHSRTAMNMYPH+R AVE  +VLL
Sbjct: 534  PGKSLVVADYGQLELRLLAHLADCKSMKAAFKAGGDFHSRTAMNMYPHVREAVEKERVLL 593

Query: 925  EWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYN 984
            EW    KPP PLLKD F SERRKAKMLNFSIAYGKT +GLA+DWKV V+EAK TVDLWY+
Sbjct: 594  EWESHGKPPAPLLKDIFGSERRKAKMLNFSIAYGKTAMGLAKDWKVKVDEAKATVDLWYS 653

Query: 985  ERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAA 1044
            +R EVL WQ+ RK+E+     VHTLLGRAR  P I S     R+H+ERAAINTPVQGSAA
Sbjct: 654  DRPEVLAWQKERKQEAHTSLRVHTLLGRARHLPDINSSNALLRSHMERAAINTPVQGSAA 713

Query: 1045 DVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNN 1104
            DVAMCAMLEI++N++L+ELGWKLLLQVHDEVILEGPSESA+ AK +V++ M  PFNG+N 
Sbjct: 714  DVAMCAMLEINRNSKLRELGWKLLLQVHDEVILEGPSESAQEAKELVIKSMMYPFNGENF 773

Query: 1105 LRVDLSVDAKCAQNWYSAK 1123
            L V+L VD   A++WY+AK
Sbjct: 774  LDVELVVDGDYAESWYAAK 792


>gi|413917188|gb|AFW57120.1| hypothetical protein ZEAMMB73_274601 [Zea mays]
          Length = 715

 Score =  959 bits (2480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/758 (63%), Positives = 569/758 (75%), Gaps = 55/758 (7%)

Query: 375  EVAKIDVKQETPVDHGEVICFSIYSG----PEADFGNGKSCIWVDLLDGGGRDLLNEFAP 430
            +VA I+ K+ETPV HGEVICFSIYS       ADFGNGK+CIWVD+LDGG R +L EFAP
Sbjct: 4    QVANINAKEETPVGHGEVICFSIYSANSDVQAADFGNGKTCIWVDVLDGG-RGVLMEFAP 62

Query: 431  FFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGD 490
            FFED SIKKVWHNYSFD+HV+ENYG+K++GFHADTMH+ARLWDSSR+ +GGYSLE LT D
Sbjct: 63   FFEDSSIKKVWHNYSFDSHVIENYGIKIAGFHADTMHLARLWDSSRKIDGGYSLEGLTND 122

Query: 491  RKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQRE 550
            R+VM        +D+ K        GK SMK IFGR+ ++KDGS GK+ ++ PV++LQRE
Sbjct: 123  RRVMD----TVPEDLPKP-------GKTSMKTIFGRKNIRKDGSEGKVVSVEPVKKLQRE 171

Query: 551  ERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILV 610
            +RELWI YS+ DS++TL+LY SLK KL    W LDG   P  +M+DFY++YW+PFG +LV
Sbjct: 172  DRELWICYSSLDSMSTLRLYDSLKSKLTTRRWILDG--CPRGTMYDFYEQYWRPFGALLV 229

Query: 611  KMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
            KMETEGMLVDR YLSEIEK A AE++ A ++FRKWASK+CPDAKYMNV SD Q+RQLLFG
Sbjct: 230  KMETEGMLVDRGYLSEIEKAAIAERKLAADKFRKWASKYCPDAKYMNVNSDIQIRQLLFG 289

Query: 671  GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWP 730
            G  N     E+ P  + FKV N E V  EGKKT SK+R I L SI  DL  +M+T +GWP
Sbjct: 290  GIENRHKSGETWPHSKTFKVLNEESVATEGKKT-SKYRTIKLCSIVEDLKIDMFTPSGWP 348

Query: 731  SVGGDALKTLARNISAEYD-CVDGAHDLDD-SGCTEETEYKGAVASNNKIFATEQEAREA 788
            +V GDAL++LA  I  EY   +D   D D+ +  +E  +   +  +  + F   +  +EA
Sbjct: 349  TVSGDALRSLAGKIPTEYIYTIDDIQDDDEYTSGSENPDGNSSYGTAYEAFGGGKNGKEA 408

Query: 789  CDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQP 848
            C AI+ALCE+CSIDSLISNFILPLQG ++S   GR+HCSLNINTETGRLSAR PNLQNQP
Sbjct: 409  CHAIAALCEICSIDSLISNFILPLQGDHISCAEGRIHCSLNINTETGRLSARTPNLQNQP 468

Query: 849  ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            ALEKDRY+IRQAF+A PGNSLIVADYGQLELRILAHL NCKSML AFKAGGDFHSRTAMN
Sbjct: 469  ALEKDRYRIRQAFVAAPGNSLIVADYGQLELRILAHLTNCKSMLHAFKAGGDFHSRTAMN 528

Query: 909  MYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            MY HIR+AV+  +VLLEWH   G++KPPVPLLK                           
Sbjct: 529  MYQHIRDAVQEKKVLLEWHPQPGQEKPPVPLLK--------------------------- 561

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
                VSV+EA+ T+ LWY +R+EVL WQ+++KK +     V+TLLGR+R FP +      
Sbjct: 562  ----VSVKEARDTLKLWYRDRKEVLAWQKSQKKLASEKGEVYTLLGRSRHFPYLTQYGPG 617

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAE 1085
            QR HIERAAIN PVQGSAADVAMCAMLEI +N RLKELGW+LLLQVHDEVILEGPSESAE
Sbjct: 618  QRGHIERAAINAPVQGSAADVAMCAMLEIERNVRLKELGWRLLLQVHDEVILEGPSESAE 677

Query: 1086 VAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            VAKAIVVECMSKPF G N L VDL+VDAKCA++WY+AK
Sbjct: 678  VAKAIVVECMSKPFYGTNILNVDLAVDAKCAKSWYAAK 715


>gi|168060384|ref|XP_001782176.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666342|gb|EDQ52999.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 808

 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/802 (59%), Positives = 606/802 (75%), Gaps = 29/802 (3%)

Query: 344  NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
            +VM+VD+V  A+ VV  L ++YK++VHACDTEVA IDVK+E+PV HG++ CFSIY GP A
Sbjct: 14   SVMIVDSVEKAEMVVEQLMSEYKNVVHACDTEVAGIDVKKESPVGHGQITCFSIYCGPGA 73

Query: 404  DFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHA 463
            DFG GK+ +WVD+LDGG  D+L  F  +FEDPSI+KVWHNYSFD H+L  +G+   GF+A
Sbjct: 74   DFGYGKNRLWVDVLDGGD-DVLRVFKRYFEDPSIQKVWHNYSFDKHILSRHGIHPQGFYA 132

Query: 464  DTMHMARLWDSSRR-TEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKD 522
            DTMH+ARL DS+RR ++GGY+LE L+ DRKVM    K + ++   G+    F+GK SMK+
Sbjct: 133  DTMHLARLNDSARRGSKGGYALEVLSADRKVMDYCSKNFTEE--DGSV---FVGKKSMKE 187

Query: 523  IFGRRKLKKDGSAGKISTIAPVEELQREE--RELWISYSAFDSINTLKLYKSLKKKLLEM 580
            +FG+ KLKKDG+ GKI  + PV+ELQR+E  R+ WI YS  D++ T +L+ SL+ KL   
Sbjct: 188  LFGKAKLKKDGTPGKIKVVPPVDELQRDEELRDAWIHYSTLDAVCTWRLFVSLQHKLSNT 247

Query: 581  SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVN 640
             W +      G SM+DFY++YW+PFGE+LV+ME  GMLVD ++L+ +EK+ARA+Q+ +V+
Sbjct: 248  PWSVAELRHKG-SMYDFYEKYWRPFGEVLVQMEAYGMLVDYDHLATVEKLARAQQKISVS 306

Query: 641  RFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEG 700
            RFRKWA+++CP+A  MNVGSD Q+RQ LFGG  N KD  ++LP+ER+F  PNT+G I EG
Sbjct: 307  RFRKWAARYCPNAARMNVGSDAQIRQFLFGGTANRKDADQALPMERVFSTPNTDGFIEEG 366

Query: 701  KKTPSKFRNITLRSI---GVDLPTEMYTATGWPSVGGDALKTLARNISAEYDC------- 750
            KK   K + + +  +   G+ +P E YT++GWP+VGG A++ LA  +S +Y         
Sbjct: 367  KKIAKKTKPMVITGLANHGIKIPVETYTSSGWPAVGGAAIRALAGKVSIDYSDIDDDAAE 426

Query: 751  ----VDGAHDLDDSGCTEETEYK---GAVASNNKIFATEQEAREACDAISALCEVCSIDS 803
                VD   ++  +    ET+++          K F   QE +EAC A++ALCEV SI++
Sbjct: 427  GVLEVDTEPEVSLTSAGVETDHEEDLSVYGKAYKAFLGGQEGKEACMALAALCEVASINT 486

Query: 804  LISNFILPLQGSNV-SGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFI 862
            L+SNFI PLQG+++ S  +GRVHCSLNINTETGRLSARRP+LQNQPALEKDRYKIRQAF+
Sbjct: 487  LLSNFIEPLQGNDIKSVSDGRVHCSLNINTETGRLSARRPSLQNQPALEKDRYKIRQAFV 546

Query: 863  AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQV 922
            A PG +L+VADYGQLELR+LAHLA+CKSM  AF AGGDFHSRTAMNMYPH+R AVE  +V
Sbjct: 547  AAPGKALVVADYGQLELRLLAHLADCKSMKAAFIAGGDFHSRTAMNMYPHVREAVEKDRV 606

Query: 923  LLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLW 982
            LLEW G +KPPVPLLKD F SERRKAKMLNFSIAYGKT +GLA+DW V ++EAK TVDLW
Sbjct: 607  LLEWEGLEKPPVPLLKDMFGSERRKAKMLNFSIAYGKTAMGLAKDWNVKLDEAKATVDLW 666

Query: 983  YNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPV-QG 1041
            Y++R EVL WQ+ RK+E+     VHTLLGRAR  P I S     R+H+ERAAINTPV QG
Sbjct: 667  YSDRPEVLAWQKERKQEAHETLRVHTLLGRARHLPDINSSNSLLRSHMERAAINTPVQQG 726

Query: 1042 SAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNG 1101
            SAADVAMCAMLEI++NARL+ELGWKLLLQVHDEVILEGP ESAE AK +V++ M  PFNG
Sbjct: 727  SAADVAMCAMLEINQNARLRELGWKLLLQVHDEVILEGPLESAEEAKELVIKSMMYPFNG 786

Query: 1102 KNNLRVDLSVDAKCAQNWYSAK 1123
            +N L V+L VD   A+NWY+AK
Sbjct: 787  ENILDVELVVDGDYAENWYAAK 808


>gi|302769001|ref|XP_002967920.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
 gi|300164658|gb|EFJ31267.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
          Length = 788

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/809 (58%), Positives = 586/809 (72%), Gaps = 51/809 (6%)

Query: 344  NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
            +++VV+   +A+KVV +L  KYK  VHACDTEVA IDVK+E+PV HG++ CFSIY G   
Sbjct: 2    DILVVETEKSAEKVVKLLMEKYKDEVHACDTEVADIDVKKESPVGHGKLTCFSIYCGVNV 61

Query: 404  DFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHA 463
            DFG GKS +WVDLL+GG   +L+ F P+FE+  IKK+WHNYSFD H+L NYG+K +GF+A
Sbjct: 62   DFGGGKSRVWVDLLNGG-PGILDVFRPYFENAEIKKIWHNYSFDKHILGNYGIKAAGFYA 120

Query: 464  DTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDI 523
            DTMH+ARLWDS+R   G YSLEALT D KVM  D +  Q             GK SMKD+
Sbjct: 121  DTMHLARLWDSARGGLG-YSLEALTADPKVM--DDRPLQN------------GKTSMKDL 165

Query: 524  FGRRKLKKDGSAGKISTIAPVEELQ--REERELWISYSAFDSINTLKLYKSLKKKLLEMS 581
            F    +KKDGS GK+  I PVEELQ  ++ R+ WI YSA DS+ T  L+ SLKKKLL+ S
Sbjct: 166  FAITNVKKDGSEGKLKVIPPVEELQTSKDTRDKWIYYSAHDSVCTWHLWSSLKKKLLKAS 225

Query: 582  WKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNR 641
            W ++G      +M+ FY+ YW+ FG++LV+ME EGM VD  +L+E+EKVA  +++ +V+R
Sbjct: 226  WYMEGDK--RGNMYQFYELYWRHFGDVLVRMEAEGMRVDTVHLAEVEKVALNQKQLSVSR 283

Query: 642  FRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGK 701
            F+KWAS++CPDA YMNV SD Q+RQ+LFGG  N KD S S P ER FKVPN++  +  G 
Sbjct: 284  FQKWASQYCPDAMYMNVCSDVQIRQILFGGTSNKKDPSVSYPKERTFKVPNSDNYLEPGA 343

Query: 702  KTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNI----------------S 745
            KT  K+R+I+L  I V LP E +T +GWP+V G  LK+LA N+                +
Sbjct: 344  KTVKKYRSISLEGIDVQLPVETFTPSGWPAVSGAVLKSLAGNVVTDYDEEEDEAEFSPEA 403

Query: 746  AEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLI 805
            + +    G    D     + + Y  A  +    F   +E ++AC AI+ALCE+ SID+LI
Sbjct: 404  STFITSGGVEGTDGDKSEDLSAYGKAYGA----FGGGEEGKKACMAIAALCELSSIDTLI 459

Query: 806  SNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQ-----------NQPALEKDR 854
            SNFI PLQ   + G +GRVHCSLNINTETGRLSARRPNLQ           NQPALEKDR
Sbjct: 460  SNFIQPLQNGQILGPDGRVHCSLNINTETGRLSARRPNLQASLQRSSFLNINQPALEKDR 519

Query: 855  YKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIR 914
            YKIR+AFIA PG SLIVADYGQLELRILAH++ CKSML+AF+AGGDFHSRTA+NMYPH+R
Sbjct: 520  YKIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRTALNMYPHVR 579

Query: 915  NAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEE 974
             AVETG+VLLEW GE K PVPLLKD F SERRKAKMLNFSIAYGKT +GL++DWKVS+ E
Sbjct: 580  KAVETGEVLLEWSGEGKSPVPLLKDKFGSERRKAKMLNFSIAYGKTAMGLSKDWKVSLYE 639

Query: 975  AKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAA 1034
            A++T+DLWYN+R EV  WQ    + +RI   VHTLLGR+R  P I +     R H+ERAA
Sbjct: 640  AQQTLDLWYNDRSEVKEWQTDTIERARITKRVHTLLGRSRHLPDINTSISVLRGHLERAA 699

Query: 1035 INTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVEC 1094
            INTPVQGSAADVAMCAMLEI +N+RL+ELGWKL+LQVHDEVILEGPSES E A+ IVV+C
Sbjct: 700  INTPVQGSAADVAMCAMLEIDRNSRLRELGWKLILQVHDEVILEGPSESVEEAQEIVVKC 759

Query: 1095 MSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            MS PF G+N L+V+L VDA  A++WY AK
Sbjct: 760  MSFPFEGENFLKVNLDVDADHAKSWYEAK 788


>gi|302761166|ref|XP_002964005.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
 gi|300167734|gb|EFJ34338.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
          Length = 788

 Score =  945 bits (2443), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/809 (58%), Positives = 586/809 (72%), Gaps = 51/809 (6%)

Query: 344  NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
            +++VV+N  +A+KVV +L  KYK  VHACDTEVA IDVK+E+PV HG++ CFSIY G   
Sbjct: 2    DILVVENEKSAEKVVKLLMEKYKDEVHACDTEVADIDVKKESPVGHGKLTCFSIYCGVNV 61

Query: 404  DFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHA 463
            DFG GKS +WVDLL+GG   +L+ F P+FE+  IKK+WHNYSFD H+L NYG+K +GF+A
Sbjct: 62   DFGGGKSRVWVDLLNGG-PGILDVFRPYFENAEIKKIWHNYSFDKHILGNYGIKAAGFYA 120

Query: 464  DTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDI 523
            DTMH+ARLWDS+R   G YSLEALT D KVM  D +  Q             GK SMKD+
Sbjct: 121  DTMHLARLWDSARGGLG-YSLEALTADPKVM--DDRPLQN------------GKTSMKDL 165

Query: 524  FGRRKLKKDGSAGKISTIAPVEELQ--REERELWISYSAFDSINTLKLYKSLKKKLLEMS 581
            F    +KKDGS GK+  I PVEELQ  ++ R+ WI YSA DS+ T  L+ SLKKKL + S
Sbjct: 166  FAITNVKKDGSEGKLKVIPPVEELQTSKDTRDKWIYYSAHDSVCTWHLWSSLKKKLQKAS 225

Query: 582  WKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNR 641
            W ++G      +M+ FY+ YW+ FG++LV+ME EGM VD  +L+E+EKVA  +++ +V+R
Sbjct: 226  WYMEGDKR--GNMYQFYELYWRHFGDVLVQMEAEGMRVDTVHLAEVEKVALNQKQLSVSR 283

Query: 642  FRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGK 701
            F+KWAS++CPDA YMNV SD Q+RQ+LFGG  N KD S S P ER FKVPN++  +  G 
Sbjct: 284  FQKWASQYCPDAMYMNVCSDVQIRQILFGGTSNKKDPSVSYPKERTFKVPNSDNYLEPGA 343

Query: 702  KTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNI----------------S 745
            KT  K+R+I+L  I V LP E +T +GWP+V G  LK+LA N+                +
Sbjct: 344  KTVKKYRSISLEGIDVQLPVETFTPSGWPAVSGAVLKSLAGNVVTDYDEEEDEAEFSPEA 403

Query: 746  AEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLI 805
            + +    G    D     + + Y  A  +    F   +E ++AC AI+ALCE+ SID+LI
Sbjct: 404  STFITSGGVEGTDGDKSEDLSAYGKAYGA----FGGGEEGKKACMAIAALCELSSIDTLI 459

Query: 806  SNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQ-----------NQPALEKDR 854
            SNFI PLQ   + G +GRVHCSLNINTETGRLSARRPNLQ           NQPALEKDR
Sbjct: 460  SNFIQPLQNGQILGPDGRVHCSLNINTETGRLSARRPNLQASLQRSSFLNINQPALEKDR 519

Query: 855  YKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIR 914
            YKIR+AFIA PG SLIVADYGQLELRILAH++ CKSML+AF+AGGDFHSRTA+NMYPH+R
Sbjct: 520  YKIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRTALNMYPHVR 579

Query: 915  NAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEE 974
             AVETG+VLLEW GE K PVPLLKD F SERRKAKMLNFSIAYGKT +GL++DWKVS+ E
Sbjct: 580  KAVETGEVLLEWSGEGKSPVPLLKDKFGSERRKAKMLNFSIAYGKTAMGLSKDWKVSLYE 639

Query: 975  AKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAA 1034
            A++T+DLWYN+R EV  WQ    + +RI   VHTLLGR+R  P I +     R H+ERAA
Sbjct: 640  AQQTLDLWYNDRSEVKEWQTDTIERARITKRVHTLLGRSRHLPDINTSISVLRGHLERAA 699

Query: 1035 INTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVEC 1094
            INTPVQGSAADVAMCAMLEI +N+RL+ELGWKL+LQVHDEVILEGPSES E A+ IVV+C
Sbjct: 700  INTPVQGSAADVAMCAMLEIDRNSRLRELGWKLILQVHDEVILEGPSESVEEAQEIVVKC 759

Query: 1095 MSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            MS PF G+N L+V+L VDA  A++WY AK
Sbjct: 760  MSFPFEGENFLKVNLDVDADHAKSWYEAK 788


>gi|356573597|ref|XP_003554944.1| PREDICTED: uncharacterized protein LOC100787569 [Glycine max]
          Length = 1521

 Score =  812 bits (2097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/581 (69%), Positives = 460/581 (79%), Gaps = 24/581 (4%)

Query: 417  LDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSR 476
            LDGGG+++L +FA FF D SIKKVWHNYSFD HV+ENYG KVSGFHADTMHMARLWDSSR
Sbjct: 783  LDGGGKEILEKFAEFFSDSSIKKVWHNYSFDCHVIENYGFKVSGFHADTMHMARLWDSSR 842

Query: 477  RTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAG 536
              +GGYSLE LTGDR+VMS  +  ++KD+         +GK+SMK IF ++KLKKDGS G
Sbjct: 843  HLDGGYSLEGLTGDRRVMSRAQLNHEKDL---------IGKVSMKTIFSKKKLKKDGSEG 893

Query: 537  KISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFD 596
            K S IAPVEELQR+ER  WI YSA D+ +TLKLY+SLK  L +M WK DG PV GK+M+D
Sbjct: 894  KTSIIAPVEELQRDERIPWICYSALDASSTLKLYESLKSHLSDMPWKFDGVPVYGKTMYD 953

Query: 597  FYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYM 656
            FY EYW+PFGE+LV ME+EGMLVDR YL  IEKVA+ EQE AVNRFRKWA+++CPDA+YM
Sbjct: 954  FYNEYWRPFGELLVMMESEGMLVDRAYLESIEKVAKEEQEVAVNRFRKWATRYCPDAQYM 1013

Query: 657  NVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG 716
            NVGSD+QLRQLLFGG  N KD +++LP ERIFK+PN   VI EGKK P +F +I L S+G
Sbjct: 1014 NVGSDSQLRQLLFGGIVNRKDSNQTLPTERIFKIPNVNNVIEEGKKAPKRFCDIKLTSLG 1073

Query: 717  VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCV--DGAHDLDD-------SGCTEETE 767
             +L TEMYTATGWPSV G ALK LA +ISA+YD    D   DLDD       S       
Sbjct: 1074 YNLETEMYTATGWPSVSGHALKALAGSISADYDFFDEDCNLDLDDEDENPSQSEVAPVKI 1133

Query: 768  YKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS 827
             K A  +    F TE+E REAC AI+ALC+VCSI+SLISNFILPLQG N+SGK+ RVHCS
Sbjct: 1134 DKSAYGTAYAAFPTEEEGREACHAIAALCQVCSINSLISNFILPLQGHNISGKDLRVHCS 1193

Query: 828  LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA P NSLIVADYGQLELRILAHLA+
Sbjct: 1194 LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPKNSLIVADYGQLELRILAHLAD 1253

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASE 944
            CKSML+AF+AGGDFHSRTAMNMYPHIR A+E  +VLLEWH   GEDKPPVPLLKDAFASE
Sbjct: 1254 CKSMLEAFEAGGDFHSRTAMNMYPHIREALEKKEVLLEWHPQPGEDKPPVPLLKDAFASE 1313

Query: 945  RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNE 985
            RRKAKMLNFSIAY KTPVG     K+ ++ AK  ++   NE
Sbjct: 1314 RRKAKMLNFSIAYEKTPVGHG---KIYLKAAKNYLEKKTNE 1351



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/145 (78%), Positives = 124/145 (85%), Gaps = 6/145 (4%)

Query: 844  LQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHS 903
            LQNQPALEKDRYKIRQAFIA P NSLIVADYGQLELRILAHLA+CKSML+AF+AGGDFHS
Sbjct: 1360 LQNQPALEKDRYKIRQAFIAAPKNSLIVADYGQLELRILAHLADCKSMLEAFEAGGDFHS 1419

Query: 904  RTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
            RTAMNMYPHIR A+E  +VLLEWH   GEDKPPVPLLKDAFASERRKAKMLNFSIAY KT
Sbjct: 1420 RTAMNMYPHIREALEKKEVLLEWHPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYEKT 1479

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNE 985
            PVG     K+ ++ AK  ++   NE
Sbjct: 1480 PVGHG---KIYLKAAKNYLEKKTNE 1501


>gi|413917189|gb|AFW57121.1| hypothetical protein ZEAMMB73_274601 [Zea mays]
          Length = 647

 Score =  811 bits (2095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/675 (60%), Positives = 492/675 (72%), Gaps = 55/675 (8%)

Query: 375  EVAKIDVKQETPVDHGEVICFSIYSG----PEADFGNGKSCIWVDLLDGGGRDLLNEFAP 430
            +VA I+ K+ETPV HGEVICFSIYS       ADFGNGK+CIWVD+LDGG R +L EFAP
Sbjct: 4    QVANINAKEETPVGHGEVICFSIYSANSDVQAADFGNGKTCIWVDVLDGG-RGVLMEFAP 62

Query: 431  FFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGD 490
            FFED SIKKVWHNYSFD+HV+ENYG+K++GFHADTMH+ARLWDSSR+ +GGYSLE LT D
Sbjct: 63   FFEDSSIKKVWHNYSFDSHVIENYGIKIAGFHADTMHLARLWDSSRKIDGGYSLEGLTND 122

Query: 491  RKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQRE 550
            R+VM        +D+ K        GK SMK IFGR+ ++KDGS GK+ ++ PV++LQRE
Sbjct: 123  RRVMD----TVPEDLPKP-------GKTSMKTIFGRKNIRKDGSEGKVVSVEPVKKLQRE 171

Query: 551  ERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILV 610
            +RELWI YS+ DS++TL+LY SLK KL    W LDG   P  +M+DFY++YW+PFG +LV
Sbjct: 172  DRELWICYSSLDSMSTLRLYDSLKSKLTTRRWILDG--CPRGTMYDFYEQYWRPFGALLV 229

Query: 611  KMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
            KMETEGMLVDR YLSEIEK A AE++ A ++FRKWASK+CPDAKYMNV SD Q+RQLLFG
Sbjct: 230  KMETEGMLVDRGYLSEIEKAAIAERKLAADKFRKWASKYCPDAKYMNVNSDIQIRQLLFG 289

Query: 671  GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWP 730
            G  N     E+ P  + FKV N E V  EGKKT SK+R I L SI  DL  +M+T +GWP
Sbjct: 290  GIENRHKSGETWPHSKTFKVLNEESVATEGKKT-SKYRTIKLCSIVEDLKIDMFTPSGWP 348

Query: 731  SVGGDALKTLARNISAEYD-CVDGAHDLDD-SGCTEETEYKGAVASNNKIFATEQEAREA 788
            +V GDAL++LA  I  EY   +D   D D+ +  +E  +   +  +  + F   +  +EA
Sbjct: 349  TVSGDALRSLAGKIPTEYIYTIDDIQDDDEYTSGSENPDGNSSYGTAYEAFGGGKNGKEA 408

Query: 789  CDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQP 848
            C AI+ALCE+CSIDSLISNFILPLQG ++S   GR+HCSLNINTETGRLSAR PNLQNQP
Sbjct: 409  CHAIAALCEICSIDSLISNFILPLQGDHISCAEGRIHCSLNINTETGRLSARTPNLQNQP 468

Query: 849  ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            ALEKDRY+IRQAF+A PGNSLIVADYGQLELRILAHL NCKSML AFKAGGDFHSRTAMN
Sbjct: 469  ALEKDRYRIRQAFVAAPGNSLIVADYGQLELRILAHLTNCKSMLHAFKAGGDFHSRTAMN 528

Query: 909  MYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            MY HIR+AV+  +VLLEWH   G++KPPVPLLK                           
Sbjct: 529  MYQHIRDAVQEKKVLLEWHPQPGQEKPPVPLLK--------------------------- 561

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
                VSV+EA+ T+ LWY +R+EVL WQ+++KK +     V+TLLGR+R FP +      
Sbjct: 562  ----VSVKEARDTLKLWYRDRKEVLAWQKSQKKLASEKGEVYTLLGRSRHFPYLTQYGPG 617

Query: 1026 QRNHIERAAINTPVQ 1040
            QR HIERAAIN PVQ
Sbjct: 618  QRGHIERAAINAPVQ 632


>gi|115460848|ref|NP_001054024.1| Os04g0637400 [Oryza sativa Japonica Group]
 gi|113565595|dbj|BAF15938.1| Os04g0637400, partial [Oryza sativa Japonica Group]
          Length = 560

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/563 (68%), Positives = 454/563 (80%), Gaps = 10/563 (1%)

Query: 568  KLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI 627
            +LY+SLK KL +  W  DG   P  SM+DFY+EYW+PFG +LVKMET GMLVDR YLSEI
Sbjct: 1    RLYESLKSKLEKKHWTFDG--CPRGSMYDFYEEYWRPFGALLVKMETAGMLVDRGYLSEI 58

Query: 628  EKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERI 687
            EKVA A+++ A ++FRKWASK+CPDAKYMNV SDTQ+RQL FGG  N     E+LP  R 
Sbjct: 59   EKVAVAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIENRCKPGETLPKSRT 118

Query: 688  FKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAE 747
             KVPN   +IAEGKKTP K+  I L SI  DL T+++TA+GWPSV GDAL++LA  +  +
Sbjct: 119  IKVPNDGSLIAEGKKTP-KYCTIELFSIVEDLKTDLFTASGWPSVSGDALRSLAGKLPTD 177

Query: 748  YDCVDGAHDLDDSGCTEETEY----KGAVASNNKIFATEQEAREACDAISALCEVCSIDS 803
                    + DDSG +E +E+      +  +  + F   ++ +EAC AI+ALCE+CSIDS
Sbjct: 178  LVYTTDDVEDDDSGDSEISEHDLNDTASYGTAYEAFGGGKKGKEACHAIAALCEICSIDS 237

Query: 804  LISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            LISNFILPLQG+++S   GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIRQAF+A
Sbjct: 238  LISNFILPLQGNHISCDEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRQAFVA 297

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
             PGNSLIVADYGQLELRILAHLA+CKSMLDAFKAGGDFHSRTAMNMY HIR+AVE  +VL
Sbjct: 298  APGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEKKVL 357

Query: 924  LEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVD 980
            LEWH   G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKTPVGLARDWKVSV+EAK T+ 
Sbjct: 358  LEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLK 417

Query: 981  LWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQ 1040
            LWY +R+EVL WQ  +K+ ++    V+TLLGR+RRFP +   T  QR HIERAAIN PVQ
Sbjct: 418  LWYRDRKEVLAWQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQRGHIERAAINAPVQ 477

Query: 1041 GSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFN 1100
            GSAADVAMCAMLEI +NARLKELGW+LLLQVHDEVILEGP+ESA++AK+IVVECMSKPF 
Sbjct: 478  GSAADVAMCAMLEIDRNARLKELGWRLLLQVHDEVILEGPTESADLAKSIVVECMSKPFY 537

Query: 1101 GKNNLRVDLSVDAKCAQNWYSAK 1123
            G N L V+L+VDAKCAQNWY+AK
Sbjct: 538  GTNILNVELAVDAKCAQNWYAAK 560


>gi|281205135|gb|EFA79328.1| mitochondrial DNA polymerase A [Polysphondylium pallidum PN500]
          Length = 1411

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/782 (48%), Positives = 512/782 (65%), Gaps = 53/782 (6%)

Query: 344  NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
            NV VV++V  AK +V  L +   +L HACDTEV  +D+K+++P+ HG +ICFS+Y GP+ 
Sbjct: 681  NVTVVNDVEKAKAIVNQLLS-LTYLYHACDTEVVDLDLKKQSPIGHGRIICFSVYCGPDI 739

Query: 404  DFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHA 463
            DFG G S +WVD +   G ++L  F P+FE  SI KVWHNY FD H+  N+ + V GF  
Sbjct: 740  DFGTG-SRLWVDTMGEQGNEILEVFRPYFESESIYKVWHNYGFDRHIFYNHNIDVKGFGG 798

Query: 464  DTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDI 523
            DT+HMARLWD++R   GGYSLE L+              K++   +       K S+KD+
Sbjct: 799  DTLHMARLWDAARNGRGGYSLEGLS--------------KELLDNH-------KTSIKDL 837

Query: 524  FGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINTLKLYKSLKKKLLEMS 581
            FG+ K+K DG  GK   + P+E +QR  + L  WI YS+ D+  T  L ++L+ KL  M 
Sbjct: 838  FGKNKIKADGLPGKDIIVPPLEVIQRHPKHLETWIEYSSLDAELTWNLRENLQAKLQNMV 897

Query: 582  WKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNR 641
            W  D       +M+DFY   W+PFG +L  ME  GM VD E+L  +E VA  + +  ++ 
Sbjct: 898  WMND------TNMWDFYHNLWRPFGHLLTDMERRGMKVDIEHLKTVEGVATKDIQDNMDA 951

Query: 642  FRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGK 701
            F++WA K+CP+AKYMN  SD Q++QLLF    N K   E +P+ER F+  NTEG I EGK
Sbjct: 952  FQQWAVKYCPNAKYMNPSSDAQIQQLLFAPTKNVKT-KEEMPLEREFETENTEGFIEEGK 1010

Query: 702  KTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSG 761
            K P K R   L  +G  LP   +TA+GWP+V   +L+ LA N S         H  D S 
Sbjct: 1011 KKPKKMRPFLLSGLG--LPFGSHTASGWPAVDSASLRDLAGNPSKGKYGKIFNHFKDKS- 1067

Query: 762  CTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKN 821
               E + KG           EQE  EA  AI++L E+ S+ +L+S+FI+PLQ   +   N
Sbjct: 1068 ---EDKEKG-----------EQEGIEASKAITSLLEIGSVGTLLSSFIIPLQ--KLCDSN 1111

Query: 822  GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
             RVH S+N+NTETGRLS++RPNLQNQPALEKDRYKIR+AF   PGN+L+VADYGQLELR+
Sbjct: 1112 HRVHTSVNVNTETGRLSSKRPNLQNQPALEKDRYKIRKAFTCEPGNTLVVADYGQLELRL 1171

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+ NC+SM++AFK GGDFHSRTAM MYPH++ AV+ G VLLEW G+ +PP PLLKD+F
Sbjct: 1172 LAHITNCRSMINAFKIGGDFHSRTAMGMYPHVKEAVDRGDVLLEWDGDGEPPKPLLKDSF 1231

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
             +ERRKAK LNFSIAYGKT  GL++DW V+++EA++T+D WY++R EVL WQ    + + 
Sbjct: 1232 GAERRKAKTLNFSIAYGKTAHGLSKDWGVTLKEAQETLDRWYSDRPEVLLWQRKTIQIAN 1291

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
                  TL+GR R  P I +  +  + H ERA+INTP+QG AAD+ M AML I ++ RLK
Sbjct: 1292 THKWTRTLMGRYRMLPDIDNPAKGMKGHSERASINTPLQGGAADIVMKAMLMIEEDKRLK 1351

Query: 1062 ELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYS 1121
            ELG++L++Q+HDE+ILEGP + A+ A+ IV+  MS P N    L V+L VD + A+ WY 
Sbjct: 1352 ELGFQLIMQIHDELILEGPEQHAKEAREIVMRLMSNPLN--TPLLVELVVDCRFAKTWYE 1409

Query: 1122 AK 1123
            AK
Sbjct: 1410 AK 1411


>gi|384253732|gb|EIE27206.1| DNA/RNA polymerase [Coccomyxa subellipsoidea C-169]
          Length = 924

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/801 (50%), Positives = 513/801 (64%), Gaps = 49/801 (6%)

Query: 368  LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNG------KSCIWVDLLDGGG 421
            +  ACDTEV+ IDV +E+P  HG VICFS+Y G + DFG        ++ +WVD +  G 
Sbjct: 128  MFFACDTEVSHIDVTKESPCGHGTVICFSVYCGEDIDFGGSGDGDIRQNQLWVDTM--GT 185

Query: 422  RDLLNE-FAPFFEDPSIKKVWHNYSFDNHVLENY-----GLKVSGFHADTMHMARLWDSS 475
             D + E F  FFED S+ KVWHNYSFD HVL N       ++  GFHADTMHMARLWDSS
Sbjct: 186  VDAIWEAFRDFFEDKSVLKVWHNYSFDRHVLANVFVGGRPIEARGFHADTMHMARLWDSS 245

Query: 476  RRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSA 535
            RR +G YSLEAL+GD  V    ++        GN       K  MK++F   K+KKDG+ 
Sbjct: 246  RRGKG-YSLEALSGDEIVPGVHRENVLVPRRLGNGSSP-SAKTGMKELFAEPKVKKDGTL 303

Query: 536  GK------------ISTIAPVEELQR--EERELWISYSAFDSINTLKLYKSLKKKLLEMS 581
             K            I  + P+EELQ     R  WI YSA D+  T  L   L+++L  M 
Sbjct: 304  SKACLYTPFLSRVQIKELPPMEELQACVRRRGKWIRYSALDAKATHDLALGLQRQLAAMP 363

Query: 582  WKLD---GKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAA 638
                   G    G +++D YQ+YW+PFGE+L  ME EGM+VDRE+L   E+ A  +QE A
Sbjct: 364  CPPQLYLGMDPAGYTLWDLYQDYWKPFGELLTDMEKEGMMVDREHLRAAEEKAVEDQERA 423

Query: 639  VNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIA 698
              RFR+W     PDA+YMN+ S  Q+RQLLF G PN K D   L ++R FK PN  G I 
Sbjct: 424  KKRFREWVRTKVPDAEYMNICSGPQIRQLLFPGVPNMKADKGRLELQRTFKAPNVLGRIE 483

Query: 699  EGKKTPSKFRNITLRSI-GVD----LPTEMYTATGWPSVGGDALKTLARNISAEYDCV-- 751
            EGKK   K  +I +  + GVD    L  E++TA+GWP+V    L+ LA    A    +  
Sbjct: 484  EGKKIAKKQMDIVIHGLWGVDAVSPLVPEVFTASGWPAVSTPVLRGLAGKPGAAKRALLE 543

Query: 752  -DGAHDLDDSGCTE-ETEYKGAVASNN----KIFATEQEAREACDAISALCEVCSIDSLI 805
               A  L D    E E   K A A        +F   +E   AC A+ ALCEV ++D+L+
Sbjct: 544  LAAARVLADMQSLEYEANMKEAAACGYGKLYAVFGGGREGLHACAAVDALCEVSAVDTLL 603

Query: 806  SNFILPLQGSNVSGKN-GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAV 864
            SNFI PLQG  ++     RVHCSLNINTETGRLSARRPNLQNQPALEKDRYK+R+AF A 
Sbjct: 604  SNFIRPLQGGAIATPVLHRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKVRKAFRAE 663

Query: 865  PGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLL 924
            PG +L+VADYGQLELR+LAH+A+C+SML AF+ GGDFHSRTA+ MY HI+ A++ G+ LL
Sbjct: 664  PGKTLVVADYGQLELRLLAHMADCESMLRAFRLGGDFHSRTALGMYDHIKAAIDRGECLL 723

Query: 925  EWHGED--KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLW 982
            EW   +  K PVPLLKD F SERRKAK+LNFSIAYGKT  GL+RDW  S+EEAK TV+ W
Sbjct: 724  EWDSVEGQKAPVPLLKDMFGSERRKAKVLNFSIAYGKTAHGLSRDWGTSLEEAKDTVERW 783

Query: 983  YNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGS 1042
            Y++R EV  WQ+ +++ + ++ +V T+LGR R+ P  +S  +  + H  RAAINTP+QGS
Sbjct: 784  YSDRPEVEQWQKEQRRLAEMEGYVCTILGRRRQLPDAQSANQKAKGHALRAAINTPIQGS 843

Query: 1043 AADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGK 1102
            AADVA  AML I++   LKE+GW +LLQVHDEVILEGP E+AE A+ +VV+ M KPF G 
Sbjct: 844  AADVATAAMLSIARCPELKEMGWTMLLQVHDEVILEGPKETAERAQQLVVQHMEKPFEGS 903

Query: 1103 NNLRVDLSVDAKCAQNWYSAK 1123
            N LRVDL VD+  A  WY AK
Sbjct: 904  NPLRVDLVVDSNIADTWYEAK 924


>gi|330843207|ref|XP_003293552.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
 gi|325076115|gb|EGC29930.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
          Length = 1334

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/785 (48%), Positives = 508/785 (64%), Gaps = 56/785 (7%)

Query: 344  NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
            NV +V +V  AKK V  L  ++K+  HACDTE   ID+K+ +P+ HG +ICFSIY GP+ 
Sbjct: 601  NVTMVRDVETAKKAVATLM-QHKNKYHACDTETIAIDLKKVSPIGHGRMICFSIYCGPDV 659

Query: 404  DFGNGKSCIWVDLLDG-GGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
             F +G + +WVD++D   G  +L EF  +FED SI KVWHNY+FD H+  N+ + V GF 
Sbjct: 660  KFFDGNTRLWVDVMDDINGEAVLQEFKEYFEDESILKVWHNYAFDRHIFYNHNINVKGFG 719

Query: 463  ADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKD 522
             DT+HMARLW+++R+  GGYSLEAL   R+++++ K                     +KD
Sbjct: 720  GDTLHMARLWNAARQNSGGYSLEALC--RELLNKTKTP-------------------IKD 758

Query: 523  IFGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINTLKLYKSLKKKLLEM 580
            +FG++K+K +G AGK  TI P++ +QR+ R +  WI YS+ DS  T  L ++L  KL +M
Sbjct: 759  LFGQKKIKANGEAGKAITIPPLQRIQRDRRSILDWIEYSSLDSELTWSLRENLHMKLEDM 818

Query: 581  SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVN 640
             W          +M+DFY   W+PFG +L +ME  GM +D +YL  +E  A  + E   N
Sbjct: 819  VW------TQNSTMWDFYYLNWRPFGHLLTEMEQRGMKIDIDYLKNLESTAFKDMEENRN 872

Query: 641  RFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEG 700
            RF  WASKH   AKYMN  SD Q++QLLF    N K   E +P  + F+  N EG+I EG
Sbjct: 873  RFISWASKHSEGAKYMNPDSDAQIQQLLFAPVTNKKT-KEEMPKSKDFETENVEGIIEEG 931

Query: 701  KKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHD--LD 758
            +  P K  N++    G+  P+   T +GWPSV   AL+ LA   S E      A+   +D
Sbjct: 932  RTKPKK--NMSFILDGLGFPSNSVTTSGWPSVDASALRELAGK-SPENGKFGTAYQFFVD 988

Query: 759  DSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVS 818
             S   EE E  G               +EAC AI++L E+ +I +L++ FI+PLQ   ++
Sbjct: 989  KSENKEEGEALG---------------KEACLAIASLLELGTIGTLLNTFIIPLQ--KLA 1031

Query: 819  GKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
             KN R+H S+N+NTETGRLS+R+PNLQNQPALEKDRYKIR+AF   PGN+LIVADYGQLE
Sbjct: 1032 DKNSRLHTSVNVNTETGRLSSRKPNLQNQPALEKDRYKIRKAFTCEPGNTLIVADYGQLE 1091

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+ NCKSM+ AFK GGDFHSRTAM MYPH++ AV+ G+VLLEW G+ +PP PLLK
Sbjct: 1092 LRLLAHITNCKSMISAFKVGGDFHSRTAMGMYPHVKEAVDKGEVLLEWDGDGEPPKPLLK 1151

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            + FASERRKAK LNFSIAYGKT  GL+ DW V+++EA++T++ WY +R EVL WQ     
Sbjct: 1152 NIFASERRKAKTLNFSIAYGKTAHGLSTDWGVTLKEAQETLNRWYEDRPEVLVWQRKTIA 1211

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +       TL+GR R  P I +  +  +NH ERA+INTP+QG AAD+ M AML I  N 
Sbjct: 1212 TAHSHKWTRTLMGRYRHLPDIDNSAKGMKNHAERASINTPLQGGAADIVMKAMLIIEDNK 1271

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            R+KELG+KL++Q+HDE+ILEGP E+A+ A+ +V+  MS P      L +DL VD + A+ 
Sbjct: 1272 RIKELGYKLIMQIHDELILEGPEENADEARGLVMNLMSNPLTTP--LLIDLVVDCRYAKT 1329

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 1330 WYEAK 1334


>gi|308807921|ref|XP_003081271.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
 gi|116059733|emb|CAL55440.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
          Length = 968

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/831 (49%), Positives = 535/831 (64%), Gaps = 43/831 (5%)

Query: 321  KASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKY----KHLVHACDTEV 376
            +A  NE+ E    LR +       V  V+ V  A++V+ +L +      + L HACDTEV
Sbjct: 153  EAQVNEDEEIATGLRDE-------VQTVETVEEARRVLKILLDNAGTAKRPLYHACDTEV 205

Query: 377  AKIDVKQETPVDHGEVICFSIYSGPEADFG----NGKSCIWVDLLDGGGRDLLNEFAPFF 432
            A IDV  +TPV HG+V CFS++ GP+ +F     + +S +WVD L GG   +   F  +F
Sbjct: 206  AYIDVSDQTPVGHGQVTCFSVFCGPDVNFAPEGESKRSLLWVDTLRGG-EGVWEVFKEYF 264

Query: 433  EDPSIKKVWHNYSFDNHVLENY-GLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDR 491
            E+P++KKVWHNYSFD HV+EN+ G+K++GF ADTMHMARLW+S+R  +GGYSLEAL+   
Sbjct: 265  ENPNVKKVWHNYSFDRHVVENHHGIKLAGFAADTMHMARLWNSNRGLDGGYSLEALSSSA 324

Query: 492  KVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR-- 549
            +VMS+  +        G   E    K  MK IFG+ KLKKDG+ GK   + PVEE+Q   
Sbjct: 325  EVMSDCAEML------GAGAEMMRAKRGMKKIFGKPKLKKDGTPGKTIILPPVEEIQEDV 378

Query: 550  EERELWISYSAFDSINTLKLYKSLKKKLLEMSWK----LDGKPVPGK--SMFDFYQEYWQ 603
            E+R+ WI YSA D+  T  L +SL+ KL  MS +    L  KP   K  +++DFY  Y  
Sbjct: 379  EQRDKWIEYSALDAQATWFLRESLEAKLRGMSCEACPILASKPGYRKCVTLWDFYTFYLA 438

Query: 604  PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
             FG +L +ME  G+LVD+E+L+  EK+A  ++  A   FR WAS  C  AK MNVGS  Q
Sbjct: 439  EFGNLLTQMERNGLLVDKEHLANAEKMALEDKRVAEEYFRTWASAKCEGAKLMNVGSGLQ 498

Query: 664  LRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVI--AEGK--KTPSKFRNITLRSIGVD- 718
            +RQLLF G  N + D   + + R F   +TE +   A G+  K P K   + L  I V  
Sbjct: 499  IRQLLFAGAKNKRRDKPGVELVREFTQESTEWLAWDAAGREGKAPKKTMKVALHGITVKP 558

Query: 719  LPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKI 778
            +P + +TATG P+V    L++LA    A    +D    L D   +EE   K A       
Sbjct: 559  IPVQTFTATGLPAVSSVVLRSLAGKPGAARAIMDAWDTLSDEEKSEEA-LKKACGGAFDA 617

Query: 779  FATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLS 838
            F   QE  +AC AI AL +V +ID+L+SNFI+PLQG ++ G  GRVH +LNINTETGRLS
Sbjct: 618  FGGGQEGVQACAAIDALNDVAAIDTLLSNFIIPLQGDDIRGPEGRVHGALNINTETGRLS 677

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            ARRP+LQNQPALEKDRY IR+AF A PGN L+VADYGQLELR+LAH+A CKSM +AF+AG
Sbjct: 678  ARRPSLQNQPALEKDRYGIRKAFTAGPGNVLVVADYGQLELRLLAHMAGCKSMQEAFEAG 737

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEW----HGEDKPPVP-LLKDAFASERRKAKMLNF 953
            GDFHSRTA+ MY +I++A+  G+V+LE+     G D+   P L+KD FASERRKAK+LNF
Sbjct: 738  GDFHSRTALGMYSNIKDAIAKGEVVLEYGEQEEGVDEKDRPALVKDVFASERRKAKVLNF 797

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
            SIAYGKT  GL++DW  S+EEA  TV+LWY++R EV  WQE +KK +   N V TLLGR 
Sbjct: 798  SIAYGKTAHGLSKDWGTSLEEAANTVELWYSDRPEVRDWQEVQKKMAVEKNLVRTLLGRV 857

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHD 1073
            R  P   S   + ++H  RA+INTP+QG AAD+AM AML+I +  RLKELG+KLL+Q+HD
Sbjct: 858  RNLPDASSKNEAFKSHALRASINTPIQGGAADIAMLAMLQIQRCPRLKELGYKLLMQIHD 917

Query: 1074 EVILEGPSESAEVAKAIVVECMSKPFNGKNN-LRVDLSVDAKCAQNWYSAK 1123
            EVILEGP E  + A A+    M  PF G  N L V L+VD   A+ WY AK
Sbjct: 918  EVILEGPEEHKDEALALTKYHMENPFPGHVNLLDVALAVDGDYAKTWYDAK 968


>gi|145350384|ref|XP_001419587.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579819|gb|ABO97880.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 824

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/808 (49%), Positives = 524/808 (64%), Gaps = 38/808 (4%)

Query: 345  VMVVDNVSAAKKVVWMLTNKY----KHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSG 400
            V  V+ V  A++V+ +L +      + + HACDTEVA I V  +TPV HG+V CFS+Y G
Sbjct: 26   VQTVETVEEARRVLKILLDNAGTEDQPMYHACDTEVAYISVADQTPVGHGQVTCFSVYVG 85

Query: 401  PEADFG----NGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY-G 455
            P+ +F     + +S +WVD L GG   +   F  +FE+ ++KKVWHNYSFD HV+EN+ G
Sbjct: 86   PDVNFAPEGESKRSLLWVDTLRGGD-GVWEVFKEYFENANVKKVWHNYSFDRHVVENHHG 144

Query: 456  LKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFM 515
            +K++GF ADTMHMARLW+S+R+ +GGYSLEAL+     MSE  +        G   E   
Sbjct: 145  IKLAGFAADTMHMARLWNSNRKLDGGYSLEALSSSADAMSECAEML------GAGAEMMR 198

Query: 516  GKISMKDIFGRRKLKKDGSAGKISTIAPVEELQ--REERELWISYSAFDSINTLKLYKSL 573
             K  MK IFG+ KLKKDG+ GK   + P+EE+Q  R+ R+ WI YSA D+  T  L +SL
Sbjct: 199  AKRGMKKIFGKPKLKKDGTPGKTMILPPIEEIQEARDSRDRWIEYSALDAQATWFLRESL 258

Query: 574  KKKLLEMSWK----LDGKPVPGK--SMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI 627
            + KL  MS +    L  KP   K  +++DFY  Y   FG +L +ME  G+LVD+ +L+  
Sbjct: 259  EAKLRGMSCEACPILASKPGYRKCVTLWDFYTFYLAEFGNLLTQMERNGLLVDKAHLAHA 318

Query: 628  EKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERI 687
            EK+A  ++  A + FR WA+  C  A+ MNVGS  Q+RQLLF G  N + D   + + R 
Sbjct: 319  EKMAHEDKRVAEDYFRNWAASKCEGARIMNVGSGLQVRQLLFAGAKNKRRDKPGVELTRE 378

Query: 688  FKVPNTEGVI--AEGK--KTPSKFRNITLRSIGVD-LPTEMYTATGWPSVGGDALKTLAR 742
            F   ++E +   A G+  K P K   + L  I V  +  + +TATG P+V    L+ LA 
Sbjct: 379  FTQESSEWIAWDAAGREGKAPKKTMKVALHGITVKPIQVQTFTATGLPAVSSVVLRALAG 438

Query: 743  NISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSID 802
               A    +D    L D+  TE+   K A  +  + F   +E  +AC AI AL +V +ID
Sbjct: 439  KPGAARAIMDTWDSLADAEKTEDV-LKKACGTAFEAFGGGKEGVQACAAIDALNDVAAID 497

Query: 803  SLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFI 862
            +L+SNFI+PLQG ++ G  GRVH +LNINTETGRLSARRP+LQNQPALEKDRY IR+AF 
Sbjct: 498  TLLSNFIIPLQGDDIRGPEGRVHGALNINTETGRLSARRPSLQNQPALEKDRYGIRKAFT 557

Query: 863  AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQV 922
            A PGN L+VADYGQLELR+LAH+A+CKSM +AF+AGGDFHSRTA+ MY +I+ A++ G+V
Sbjct: 558  AGPGNILVVADYGQLELRLLAHMADCKSMQEAFEAGGDFHSRTALGMYSNIKEAIDKGEV 617

Query: 923  LLEWHGEDKPPV------PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAK 976
            +LE +GE +  V       L+KD FASERRKAK+LNFSIAYGKT  GLA+DW  S+EEA 
Sbjct: 618  VLE-YGEQEETVDEKDRPALVKDVFASERRKAKVLNFSIAYGKTAHGLAKDWGTSLEEAA 676

Query: 977  KTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAIN 1036
             TV+LWY +R EV  WQE +KK +   N V TLLGR R  P   S   + ++H  RA+IN
Sbjct: 677  NTVELWYADRPEVREWQEVQKKMAVEKNLVRTLLGRVRNLPDASSKNEAFKSHALRASIN 736

Query: 1037 TPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMS 1096
            TP+QG AAD+AM AML+I +  RLKELG+KLL+Q+HDEVILEGP E  + A A+    M 
Sbjct: 737  TPIQGGAADIAMLAMLQIQRCPRLKELGYKLLMQIHDEVILEGPEEHKDEALALTKYHME 796

Query: 1097 KPFNGKNN-LRVDLSVDAKCAQNWYSAK 1123
             PF G  N L V L+VD   A+ WY AK
Sbjct: 797  NPFPGHVNLLNVALAVDGDYAKTWYEAK 824


>gi|255088559|ref|XP_002506202.1| predicted protein [Micromonas sp. RCC299]
 gi|226521473|gb|ACO67460.1| predicted protein [Micromonas sp. RCC299]
          Length = 972

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/894 (46%), Positives = 546/894 (61%), Gaps = 80/894 (8%)

Query: 294  PPKL-------VSFKRSNQKNPKNDAAEGT------GQNKKASENENSEKLEILRSKLAS 340
            PPK+       +S  ++N       AA G         +K+A+ +   +      S LA 
Sbjct: 95   PPKILRFNGDKISLHKTNGNGNGRRAASGVYELDVDADDKRAASSATDDDKP---SNLAG 151

Query: 341  FYSNVMVVDNVSAAKKVVWMLT----NKYKHLVHACDTEVAKIDVKQETPVDHGEVICFS 396
                V +V++ + A++V+ +L     +  + + HA DTEV+ IDV ++ PV HG V CFS
Sbjct: 152  LIDEVAIVEDAAEARRVLKILMANTGDADRPVYHAVDTEVSHIDVSEQCPVGHGRVTCFS 211

Query: 397  IYSGPEADFG--------------NG---------KSCIWVDLLDGGGRDLLNEFAPFFE 433
            +Y GP+ DFG              NG         K+ +WVD +  G       F P+FE
Sbjct: 212  VYCGPDVDFGASQSGGNGSKNSRKNGSTGPAGGKPKTLLWVDTMSLGDEGW-KIFKPYFE 270

Query: 434  DPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKV 493
             P +KKVWHNY FD HV+EN+G+K++GF ADTMHMARLW+S+R+ EGGYSLEAL+ D KV
Sbjct: 271  SPDVKKVWHNYGFDRHVIENHGVKLAGFAADTMHMARLWNSNRKLEGGYSLEALSSDPKV 330

Query: 494  MSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR--EE 551
            MS+  + Y +       +E    K  MK IFG+ KLKKDG+ GK   + P++E+Q   E+
Sbjct: 331  MSDAGEMYSE-----AGEELIRSKRGMKKIFGKAKLKKDGTPGKTVILPPIDEIQTDPEQ 385

Query: 552  RELWISYSAFDSINTLKLYKSLKKKL----LEMSWKLDGKPVPGK--SMFDFYQEYWQPF 605
            RE WI YSA D+  T  L +SL+ KL     E    L  KP   +  +++DFY  Y + F
Sbjct: 386  RETWIEYSALDAQATWFLRESLEAKLRGIDCEACPVLSKKPTFRRCSNLWDFYVHYLREF 445

Query: 606  GEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLR 665
            GE+L  ME+ GM VD+ +L++ EK A  +++ A + FR WA+  CP A++MNVGS  Q+R
Sbjct: 446  GEVLTDMESNGMYVDKAHLADAEKRALEDKKVAEDYFRAWATGKCPAAEHMNVGSGIQVR 505

Query: 666  QLLFGGKPNSKDDSESLPIERIFKVPNTE-------GVIAEGKKTPSKF--RNITLRSIG 716
            QLLF G PN + D   +   R F + + E       G   +  K  +KF    IT R   
Sbjct: 506  QLLFAGAPNKRRDKPGVEKTREFAMVSKEWTEWDENGREGKAPKKAAKFELHGITKR--- 562

Query: 717  VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNN 776
             +L   +YT TG P+V    L+ LA    A  + VD    L D    +E   K    S  
Sbjct: 563  -NLQPPVYTTTGLPAVSSVVLRALAGKPGAARELVDNWDALADDQKKDEALAK-KCGSAF 620

Query: 777  KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGR 836
              F    +  EAC AI AL +V +ID+L+SNFI+PLQ  N+ G NGRVH +LNINTETGR
Sbjct: 621  LAFGGGFDGVEACAAIDALNDVAAIDTLLSNFIIPLQSDNLRGFNGRVHAALNINTETGR 680

Query: 837  LSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFK 896
            LSARRP+LQNQPALEKDRY IR+AF A PGN LIVADYGQLELR+LAH+A C SM +AF+
Sbjct: 681  LSARRPSLQNQPALEKDRYGIRKAFSAEPGNILIVADYGQLELRLLAHMAGCVSMREAFE 740

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEW------HGEDKPPVPLLKDAFASERRKAKM 950
            AGGDFHSRTAM MY  IR A+E G+ LLE+       G +KP   L+KD FASERRKAK+
Sbjct: 741  AGGDFHSRTAMGMYKEIREAMEQGKCLLEYGDIDDDAGGEKP--ALVKDMFASERRKAKV 798

Query: 951  LNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLL 1010
            LNFSIAYGKT  GLA+D+ VS  EA++TVDLWY++R EV  WQ  + K++     V+TLL
Sbjct: 799  LNFSIAYGKTAHGLAKDFGVSTREAEETVDLWYSDRPEVREWQAVQHKKAAEKGKVNTLL 858

Query: 1011 GRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQ 1070
            GR R  P   S    +R H  RA+INTP+QG AAD+AM AM++I +  RL+ELG+KLL+Q
Sbjct: 859  GRHRNLPEASSSDEMRRGHALRASINTPIQGGAADIAMLAMIQIHRCPRLRELGFKLLMQ 918

Query: 1071 VHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNL-RVDLSVDAKCAQNWYSAK 1123
            +HDEVILEGP E  + A A+V   M KPFN   NL  V+LSVD   A+ W+ AK
Sbjct: 919  IHDEVILEGPEEHRDEALALVKLHMEKPFNDHENLCDVELSVDGDYAKTWFEAK 972


>gi|412990863|emb|CCO18235.1| predicted protein [Bathycoccus prasinos]
          Length = 1016

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/846 (47%), Positives = 531/846 (62%), Gaps = 51/846 (6%)

Query: 316  TGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKY----KHLVHA 371
            TG    AS +E++E L             V  V  V  AK  V +L        +   HA
Sbjct: 184  TGDEDGASVDESNETL-----IPTGLREEVFCVTTVEDAKHAVAILNENLGTDEEPKYHA 238

Query: 372  CDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFG----NGKSCIWVDLLDGGG----RD 423
             DTEV+ IDV  +TPV HG VICFS+++GP+ +F     + KS +WVDLLD       ++
Sbjct: 239  LDTEVSHIDVTCQTPVGHGNVICFSVFAGPDVNFAKPGESKKSLLWVDLLDKDNVRFNQE 298

Query: 424  LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
            + + F  + E+   KKVWHNYSFD HV+EN+G+++ GF ADTMHMARLW+++R+ +GGYS
Sbjct: 299  IFDVFTSYLENEKAKKVWHNYSFDRHVVENHGIQLGGFAADTMHMARLWNTNRKLDGGYS 358

Query: 484  LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFM-GKISMKDIFGRRKLKKDGSAGKISTIA 542
            LEALT D +VM++  +         +  E  M  K+ MK IFG+ KLKKDG+ GK   + 
Sbjct: 359  LEALTSDAEVMADCGEML-------SASETMMRAKLGMKKIFGKPKLKKDGTPGKTIELP 411

Query: 543  PVEELQR--EERELWISYSAFDSINTLKLYKSLKKKLLEMSWK----LDGKPVPGKS--M 594
            P+E +Q   + R+ WI Y+A D++ T  L +SL+ KL  +S      L GKP   KS  +
Sbjct: 412  PMEVIQTTDDSRDRWIEYAALDAMATWFLRESLEAKLRGISCDACPILSGKPQFKKSTTL 471

Query: 595  FDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAK 654
            +DFY  Y +PFG +L +ME  GM VD E+L+  E++A ++++ A   FR+WA+  C DAK
Sbjct: 472  WDFYTRYTRPFGNLLTQMERNGMRVDLEHLANAEQLAMSDKKVAEEYFREWAASKCEDAK 531

Query: 655  YMNVGSDTQLRQLLFGGKPNSK-DDSESLPIERIFKVPNTEGVIAEGK----KTPSKFRN 709
            YMNVGS  Q+RQLLF G  N + +D   +   R F   + E +  + K    K P K   
Sbjct: 532  YMNVGSGLQIRQLLFAGARNKRGNDKPGVEKTREFTQESQEWLEWDAKGREGKAPKKTSK 591

Query: 710  ITLRSIGV-DLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEY 768
            ITL  I    LP   YTATG P+V    L+ LA    A  +  D    L ++    E   
Sbjct: 592  ITLHGITKRPLPVLTYTATGLPAVSSVVLRQLAGKPGAAREICDNWDSLPEADKKNEKLS 651

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K    +  + F    E   AC AI AL ++ ++D+L+SNFI+PLQG ++ G  GRVH ++
Sbjct: 652  K-ICGTAFEAFGRGFEGARACAAIDALNDLAAVDTLLSNFIIPLQGDDIRGPEGRVHGAV 710

Query: 829  NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
            NINTETGRLSARRP+LQNQPALEKDRY IR+AF A  G +LIV DYGQLELR+LAH+A+C
Sbjct: 711  NINTETGRLSARRPSLQNQPALEKDRYGIRRAFTAEEGKTLIVCDYGQLELRLLAHMADC 770

Query: 889  KSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW------HGEDKPPVPLLKDAFA 942
            KSM +AF AGGDFHSRTA+ MYP+IR A++ G+ LLE+        ED P  PLLKD FA
Sbjct: 771  KSMKEAFIAGGDFHSRTALGMYPNIREAMDKGECLLEYGPKREGEDEDAPQPPLLKDMFA 830

Query: 943  SERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRI 1002
            SERRKAK+LNFSIAYGKT  GLA+D+   +EEA KTVDLWY++R EV +WQE ++K +  
Sbjct: 831  SERRKAKVLNFSIAYGKTAHGLAKDFGTDLEEANKTVDLWYSDRPEVRSWQEVQRKHAEK 890

Query: 1003 DNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKE 1062
              HV TLLGR R  P  KS     ++H  RAAINTP+QG AAD+AM AML+I +  RLK+
Sbjct: 891  HGHVRTLLGRTRSLPDAKSRNEQFKSHALRAAINTPIQGGAADIAMLAMLKIQRCPRLKQ 950

Query: 1063 LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPF---NGKNN--LRVDLSVDAKCAQ 1117
            LG+KLL+Q+HDEVILEGP E  E A A+    M  PF   NG+N   L V+L VD   A+
Sbjct: 951  LGYKLLMQIHDEVILEGPVEHEEEALALTKAHMQNPFEDANGENVNLLDVELVVDGDSAK 1010

Query: 1118 NWYSAK 1123
             W  AK
Sbjct: 1011 TWMDAK 1016


>gi|50725504|dbj|BAD32974.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|50725832|dbj|BAD33362.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
          Length = 551

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/554 (63%), Positives = 421/554 (75%), Gaps = 12/554 (2%)

Query: 520  MKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLE 579
            MK IFGR+K++KDGS GK  +I PVE+LQRE+RELWI YS+ DS++TLKLY+SLK KL  
Sbjct: 1    MKTIFGRKKVRKDGSEGKTISIEPVEKLQREDRELWICYSSLDSMSTLKLYESLKNKLEA 60

Query: 580  MSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAV 639
              W  D    P  +M+DFY+EYW+PFG +LVKMETEG+LVDR YLSEIEK A  E+E A 
Sbjct: 61   KEWIFDD--CPRGTMYDFYEEYWRPFGALLVKMETEGVLVDRAYLSEIEKAAVTERELAA 118

Query: 640  NRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAE 699
            ++FRKWASKHCPDAKYMNV SD Q+RQL FGG  N     E+ P  + FKVPN EG+  E
Sbjct: 119  DKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIENRNKRGETWPQSKTFKVPNDEGIATE 178

Query: 700  GKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDC-VDGAHDLD 758
            GKKTP K R I L +I  DL  +M+T TGWPSV GD L++LA  I  ++   +D   + D
Sbjct: 179  GKKTP-KSRTIKLFTIVEDLKIDMFTPTGWPSVSGDVLRSLAGKIPTDHIYKIDDGQEFD 237

Query: 759  DSGCT-----EETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQ 813
            + G +     ++ E      +  + F   ++ REAC AI+ALCEV SID LIS FI+PLQ
Sbjct: 238  EDGSSLELPEQDIEDTSPYGTAYEAFGGGKKGREACHAIAALCEVFSIDKLISGFIVPLQ 297

Query: 814  GSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            G  +S K GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIR AF+A PGN+LIVAD
Sbjct: 298  GDRISCKEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRHAFVAAPGNTLIVAD 357

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GED 930
            YGQLELRILAHL NCKSML+AFKAGGDFHSRTAMNMY H+R+AVE  +VLLEWH   G+D
Sbjct: 358  YGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEEKKVLLEWHPQPGQD 417

Query: 931  KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVL 990
            KPPVPLLKDAF +ERRKAKMLNFSIAYGKT VGL+ DWKVSV EA+ T+ LWY +R+EV 
Sbjct: 418  KPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWKVSVREARDTLKLWYRDRKEVS 477

Query: 991  TWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCA 1050
             WQ+ +K  +     V+TLLGR+R+FP +      Q+ H+ERAAIN PVQGSAADVAMCA
Sbjct: 478  AWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAGPGQKGHVERAAINAPVQGSAADVAMCA 537

Query: 1051 MLEISKNARLKELG 1064
            MLEI +NARLKELG
Sbjct: 538  MLEIERNARLKELG 551


>gi|66828405|ref|XP_647557.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
 gi|27414159|gb|AAO12053.1| mitochondrial DNA polymerase A [Dictyostelium discoideum]
 gi|60475250|gb|EAL73185.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
          Length = 1369

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/789 (47%), Positives = 507/789 (64%), Gaps = 59/789 (7%)

Query: 344  NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
            NV +V +V  A+ VV +L  K K   HACDTEV  ID+K+ +P+ HG++ICFSIY GP+ 
Sbjct: 631  NVTMVRDVETARMVVSILM-KQKDRFHACDTEVIDIDLKKFSPIGHGKMICFSIYCGPQV 689

Query: 404  DFGNGKSCIWVDLLDG-GGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
             F +G S +WVD++D   G ++L  F  +FED SI KVWHNY+FD H+  N+G+ V GF 
Sbjct: 690  KFHDGNSRVWVDVMDDIEGDEILQVFKEYFEDESILKVWHNYAFDRHIFYNHGINVKGFG 749

Query: 463  ADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKD 522
             DT+HMARLW++SR   GGYSLEAL+         K+   K             K+ +KD
Sbjct: 750  GDTLHMARLWNASRMNSGGYSLEALS---------KELLNK------------PKVPIKD 788

Query: 523  IFGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINTLKLYKSLKKKLLEM 580
            +FG RK+K DG  GK   I P+E +QR+ + +  WI YS+ DS  T  L +++  KL +M
Sbjct: 789  LFGTRKIKADGEEGKSIVIPPLERIQRDSKFILNWIEYSSLDSELTWLLRENIHIKLRDM 848

Query: 581  SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVN 640
             W        G +M+DFY   W+PFG +L +ME  G+ VD +YL  +E+ A  + E    
Sbjct: 849  EWN------QGTTMWDFYYLMWRPFGHLLTEMEQRGLKVDIDYLKSLEEKAYTDMEENRK 902

Query: 641  RFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEG 700
             F  WA  H PDA+ MN  SD Q++QL F    N K   ESLP+E+ F+  N +G I  G
Sbjct: 903  VFLNWAKTHSPDAENMNPVSDAQIQQLFFAPVQNKKT-KESLPLEKDFECDNLDGTIEVG 961

Query: 701  KKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDS 760
            K  P K +   LR IG++  ++  T  GWPSV   +L+ LA       + +DG +     
Sbjct: 962  KTKPKKKKTFYLRGIGME--SKSLTTNGWPSVDSSSLRELAGK-----NPIDGKYG---- 1010

Query: 761  GCTEETEYKGAVASNNKIFAT------EQEAREACDAISALCEVCSIDSLISNFILPLQG 814
                 + Y   V S N+ +        EQ  REA  AI+AL E+ SI +L++ FI+PLQ 
Sbjct: 1011 -----SAYDFFVKSKNECYKDLPIEEREQMGREASIAINALLELGSIGTLLNTFIIPLQ- 1064

Query: 815  SNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
              ++  N R+H S+N+NTETGRLS+++PNLQNQPALEKDRYKIR+AF   PGN+LIVADY
Sbjct: 1065 -KLADSNSRLHTSINVNTETGRLSSKKPNLQNQPALEKDRYKIRKAFTCEPGNTLIVADY 1123

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
            GQLELR+LAH+ NCKSM+ AF+ GGDFHSRTAM MYPH++ A++ G+VLLEW GE +PP 
Sbjct: 1124 GQLELRLLAHITNCKSMITAFQVGGDFHSRTAMGMYPHVKEAIDRGEVLLEWDGEGEPPK 1183

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            PLLK+ +ASERRKAK LNFSIAYGKT  GL++DW V++ EAK+T++ WY +R EVL WQ 
Sbjct: 1184 PLLKNVYASERRKAKTLNFSIAYGKTAHGLSQDWGVTLNEAKETLNRWYEDRPEVLVWQR 1243

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               + +       TL+GR R+ P IK   +  + H ERA+INTP+QG AAD+ M AML I
Sbjct: 1244 KTIETAHKYGWTRTLMGRYRQLPDIKG-NKGMKGHAERASINTPLQGGAADIVMKAMLII 1302

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
              N RLKELG+KL++Q+HDE+ILEGP + A+ A++I++  MS P      L +DL VD +
Sbjct: 1303 EDNKRLKELGFKLIMQIHDELILEGPEQHADEARSIMMNLMSNPLTTP--LLIDLVVDCR 1360

Query: 1115 CAQNWYSAK 1123
             A+ WY AK
Sbjct: 1361 YAKTWYDAK 1369


>gi|303274755|ref|XP_003056693.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461045|gb|EEH58338.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 912

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/874 (46%), Positives = 534/874 (61%), Gaps = 73/874 (8%)

Query: 311  DAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKY----K 366
            D A+ +   KK S+ E  +        LA     V  V+ V  AK+V+ +L +      +
Sbjct: 51   DVADDSKTEKKTSDLEGDKP-----DNLAGLIDEVQTVETVEEAKRVLGVLMSNLGSADR 105

Query: 367  HLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFG-------------------- 406
             + HA DTEVA IDV  +TPV HG V CFS++ GP+ DF                     
Sbjct: 106  PIYHAVDTEVADIDVADQTPVGHGVVTCFSVFCGPDVDFAPGAGGGGGGGDAAAADGKEN 165

Query: 407  -----------------NGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNH 449
                               KS +WVD L  G       F P+FE P  KKVWHNYSFD H
Sbjct: 166  DSGNGNGDGGGGTSTGAKRKSLLWVDTLKLGDEGWAI-FKPYFESPDAKKVWHNYSFDRH 224

Query: 450  VLENYG-LKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKG 508
            V+EN+G +K++GF ADTMHMARLW+S+R+ EGGYSLEALT D KVMSE  + + +     
Sbjct: 225  VIENHGGIKLAGFAADTMHMARLWNSNRKLEGGYSLEALTSDPKVMSEAGEMFSE----- 279

Query: 509  NTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINT 566
              +E    K  MK IFG+ K+KKDG+ GK   + P++++Q   E+RE WI YSA D+  T
Sbjct: 280  AGEELIRSKRGMKKIFGKPKIKKDGTPGKTIELPPIDQIQNDPEQRETWIEYSALDAQAT 339

Query: 567  LKLYKSLKKKLLEMSW----KLDGKPV--PGKSMFDFYQEYWQPFGEILVKMETEGMLVD 620
              L +SL+ KL  +S     +L  KP      ++++FY  Y + FGE+L  ME+ GM VD
Sbjct: 340  WFLRESLEAKLRGISCDACPRLSDKPTFHECANLWEFYTTYLREFGEVLTDMESAGMFVD 399

Query: 621  REYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSE 680
            +++L   EK A A+++ A + FR+WA K CP A++MNVGS  Q+RQLLF G  N + D  
Sbjct: 400  KKHLEGAEKQALADKKVAEDYFRRWAMKMCPAAEHMNVGSGIQVRQLLFAGARNKRPDKP 459

Query: 681  SLPIERIFKVPNTEGVI-AEGK---KTPSKFRNITLRSIGV-DLPTEMYTATGWPSVGGD 735
             +  ER F + + E     EG    K P K    TL  +   DL   +YTATG P+V   
Sbjct: 460  GVEKEREFAMVSPEWTAWDEGGREGKAPKKGAKFTLHGVTKRDLAVPVYTATGLPAVSSV 519

Query: 736  ALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISAL 795
             L++LA    A  + VD    L D+  T +   K   A+ +  F    +  EAC A+ AL
Sbjct: 520  VLRSLAGRPGAAREIVDTWDALTDAEKTNDALKKSCGAAYDA-FGGGYDGAEACAAVDAL 578

Query: 796  CEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRY 855
             +V +ID+L+SNFI+PLQ  N+ GK GRVH +LNINTETGRLSARRP+LQNQPALEKDRY
Sbjct: 579  NDVAAIDTLLSNFIIPLQSDNLRGKTGRVHTALNINTETGRLSARRPSLQNQPALEKDRY 638

Query: 856  KIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRN 915
             IR+AF   PGN L+VADYGQLELR+LAH+A C SM +AF+AGGDFHSRTAM MY  IR 
Sbjct: 639  GIRKAFTCRPGNILVVADYGQLELRLLAHMAGCASMREAFEAGGDFHSRTAMGMYKEIRE 698

Query: 916  AVETGQVLLEW----HGEDKPPVP-LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
            A++ G+ LLE+    + ED+   P L+KD FASERRKAK+LNFSIAYGKT  GLA+D+ V
Sbjct: 699  AMDEGKCLLEYGSEGYDEDEANRPALVKDMFASERRKAKVLNFSIAYGKTAHGLAKDFGV 758

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
            S +EA+ TV+LWY++R EV  WQE +   +     V TLLGR R  P   S    +R H 
Sbjct: 759  STKEAEDTVNLWYSDRPEVRAWQEVQHANATKLGKVSTLLGRHRNLPEASSRDEMRRQHA 818

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAI 1090
             RA+INTP+QG AAD+AM AM++I +  RLKE+G++LL+Q+HDEVILEGP E  + A A+
Sbjct: 819  LRASINTPIQGGAADIAMLAMMQIHRCPRLKEIGYELLMQIHDEVILEGPEEHKDEALAL 878

Query: 1091 VVECMSKPFNGKNNL-RVDLSVDAKCAQNWYSAK 1123
            V   M  PFN   NL  VDL+VD   A+ W+ AK
Sbjct: 879  VKRHMENPFNDHENLCDVDLNVDGNYAKTWFEAK 912


>gi|440799260|gb|ELR20315.1| 5'3' exonuclease, SAM domain containing protein [Acanthamoeba
            castellanii str. Neff]
          Length = 1070

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/785 (47%), Positives = 501/785 (63%), Gaps = 59/785 (7%)

Query: 344  NVMVVDNVSAAKKVVWMLTNK-YKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPE 402
             V +VD    A++V+ +L +   +   HACDTE  KI+VK ++P ++GEVIC S+Y GP+
Sbjct: 340  GVTIVDTPEEARRVLRILRSPGVRERYHACDTEAIKIEVKHQSPYNYGEVICASVYCGPD 399

Query: 403  ADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
             DFG G + +W+D +D   R +L+ F  +FED  IKKVWHNYSFD  ++  +G+ V GF 
Sbjct: 400  VDFGTGPN-LWIDNMDDA-RGVLDLFKEYFEDEGIKKVWHNYSFDRAMMWRHGIDVKGFG 457

Query: 463  ADTMHMARLWDSSRRTEGG-YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMK 521
             DT+HMARLWD++R + G  YSLEALTG+              + +G T      K S+K
Sbjct: 458  GDTIHMARLWDAARTSVGKKYSLEALTGE--------------LLEGET------KRSIK 497

Query: 522  DIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMS 581
            +IFGR K+ KDG+ GK   +A +E L       WI YS +D+  T +L   L+ +L EM 
Sbjct: 498  EIFGRNKVLKDGTLGK-EIVAGMEALNN-----WIYYSTYDTRGTYELRDKLEDQLREMP 551

Query: 582  WKLDGK-PVPG--KSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAA 638
            W  +GK  +PG  ++M+D+YQ YW PFGE+L  ME EG+ V+ +YL+EIE+VA AE +  
Sbjct: 552  WVYEGKKALPGANRTMWDYYQNYWLPFGEVLTDMEREGIKVNVDYLAEIEQVAVAEGKKH 611

Query: 639  VNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIA 698
              RF++WAS++C DA+YMN  SD Q +QL F    N K D + +P ER+F + N EG+  
Sbjct: 612  QIRFKEWASEYCQDARYMNPTSDAQKQQLFFAPCKNLKTD-DMMPAERLFDIENDEGIPD 670

Query: 699  EGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLD 758
                   K R I +   G  LP   +T  GWP+ G + LK LA                 
Sbjct: 671  PVTGKVKKKRQIRISGFG--LPAIAHTGAGWPAAGAEVLKQLA----------------- 711

Query: 759  DSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVS 818
              G   +   K  VA   K F+  +   EAC AI +L ++ SID+L+SNFI+PLQ  +  
Sbjct: 712  --GKPFDNPPKYGVAY--KAFSEGEAGAEACQAIDSLVKMSSIDTLLSNFIVPLQ--HEV 765

Query: 819  GKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
              N R+H SLNINTETGRLS RRPNLQNQPALEKD +KIR +F    GN LIVADYGQLE
Sbjct: 766  DPNNRIHASLNINTETGRLSCRRPNLQNQPALEKDIFKIRSSFTCEKGNKLIVADYGQLE 825

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+  C+SM+DAF+ GGDFHSRTA+ MY H++ A++ G+VLLEW GE KPPVPLLK
Sbjct: 826  LRLLAHMTKCRSMIDAFQKGGDFHSRTALGMYSHVQEAIQKGEVLLEWGGEGKPPVPLLK 885

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D FA+ER++AK LNFSIAYGKT +GL++DW VS++EAK T+  WY++R EVL WQE   +
Sbjct: 886  DIFATERKRAKTLNFSIAYGKTAMGLSKDWGVSLQEAKDTLQRWYSDRPEVLQWQENTIR 945

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R   +  TL+GR R  P I       R H ERAAINTP+QG AAD+ + AM+    + 
Sbjct: 946  TARKTGYTKTLMGRYRPLPDISHSKPMMRGHAERAAINTPIQGGAADIVINAMVLAHHDE 1005

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
             L+  GWK++LQVHDE++LEGP+ESAE A A ++E M  P      L V+L+VD K    
Sbjct: 1006 LLRRWGWKMILQVHDELMLEGPAESAEEALARLIEVMQNPMPEGEELLVELAVDGKAGST 1065

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 1066 WYEAK 1070


>gi|328868272|gb|EGG16650.1| mitochondrial DNA polymerase A [Dictyostelium fasciculatum]
          Length = 1855

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/790 (48%), Positives = 499/790 (63%), Gaps = 66/790 (8%)

Query: 343  SNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPE 402
            ++V  V+ V  A+++          + HACDTEV  IDVK+++P+ HG++ICFSIY GP+
Sbjct: 1123 NDVTCVNTVEHAREI---------DVYHACDTEVIDIDVKEQSPIGHGKIICFSIYCGPD 1173

Query: 403  ADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
             DFG G S IWVD+L   G ++L  F  +FED SI KVWHNY+FD HV  N+ + V GF 
Sbjct: 1174 IDFGTG-SRIWVDILGSNGDEILQIFKEYFEDESIFKVWHNYAFDRHVFYNHNIDVVGFG 1232

Query: 463  ADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKD 522
             DTM MARLWD+SR   GGYSLE LT D      DK                  K +M D
Sbjct: 1233 GDTMLMARLWDASRMMRGGYSLEGLTKDLL----DKH-----------------KTNMDD 1271

Query: 523  IFGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINTLKLYKSLKKKLLEM 580
            +FG+ KLK DG+ GK   + P+E LQR  + L  WI YS+ D+  T  L ++L KKL+ M
Sbjct: 1272 LFGQPKLKSDGTPGKGIILPPLEHLQRSSKHLTKWIEYSSRDAEVTWMLRENLHKKLMTM 1331

Query: 581  SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVN 640
             W       P  +M+DFY   W+PFG++L  ME  GM VD E+L  +E +A+ +      
Sbjct: 1332 EWI-----GPNSNMWDFYYMMWRPFGQLLTDMERRGMKVDLEHLKGVEVIAQRDITEHNE 1386

Query: 641  RFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEG 700
             FR+WA  +C + K+MN+ SD Q++Q LF    N K   E    E   +  N +G+I EG
Sbjct: 1387 NFRRWALGYCENVKHMNIDSDAQVQQFLFAPCRNVKTKEEMAREEEFERE-NVDGIIEEG 1445

Query: 701  KKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDS 760
             K     + I  +  G+ LP    T +GWPSV   +L+ L+       D  +G +     
Sbjct: 1446 AK--KAKKKIGFKLAGLGLPVPGVTNSGWPSVDAASLRLLSGK-----DPANGKYG---- 1494

Query: 761  GCTEETEYKG-AV------ASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQ 813
                 T Y   AV      A+  +I   ++E R+AC AI++L EV SI +LIS+FI+PLQ
Sbjct: 1495 -----TAYNHFAVDRLPPNATEEEIEKAKEEGRQACLAIASLLEVGSIGTLISSFIIPLQ 1549

Query: 814  GSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
               ++  N R+H S+N+NTETGRLS+RRPNLQNQPALEKDRYKIR+AF   PGN+L+VAD
Sbjct: 1550 --RLADSNHRLHTSVNVNTETGRLSSRRPNLQNQPALEKDRYKIRKAFTCEPGNTLVVAD 1607

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            YGQLELR+L H+ NCKSMLDAF+ GGDFHSRTAM MYPH+R AV+ G+VLLEW GE  PP
Sbjct: 1608 YGQLELRLLGHITNCKSMLDAFRVGGDFHSRTAMGMYPHVRAAVDAGEVLLEWDGEGAPP 1667

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             PLLKD FASERRKAK LNFSIAYGKT  GL++DW V++ EA+ T++ WY +R EVL WQ
Sbjct: 1668 KPLLKDKFASERRKAKTLNFSIAYGKTAHGLSKDWNVTLSEAQNTLNRWYEDRPEVLLWQ 1727

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
             +  + +       TL+GR R  P I S  R    H ERA+INTP+QG AAD+ M AML 
Sbjct: 1728 RSTIQIAHQKKWTRTLMGRYRLLPDIDSKARGFVGHSERASINTPLQGGAADIVMKAMLI 1787

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            I ++ARLKELG++L++Q+HDE+ILEGP E A  A+ IV++ M  P N    L VDL VD 
Sbjct: 1788 IEQDARLKELGYRLIMQIHDELILEGPEEHAPEARDIVIKLMGNPLNKP--LLVDLVVDC 1845

Query: 1114 KCAQNWYSAK 1123
            + A+ WY AK
Sbjct: 1846 RFAKTWYEAK 1855


>gi|325188009|emb|CCA22551.1| hypothetical protein SELMODRAFT_88603 [Albugo laibachii Nc14]
          Length = 855

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/818 (47%), Positives = 510/818 (62%), Gaps = 69/818 (8%)

Query: 323  SENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
            SE+  S  L  L    A  +   +V D  +A + V  +      H VHACDTEVA IDVK
Sbjct: 90   SEDIESHLLHGLSEADADHWPVNLVQDKQTADRLVQQIYALGPDH-VHACDTEVADIDVK 148

Query: 383  QETPVDHGEVIC----FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
               PV +G+V       ++Y GP+ ++GNG   IWVD LD      L  F  F ED S+K
Sbjct: 149  SVGPVGNGKVSLQFEDIALYDGPDVNYGNG-PYIWVDNLDNA-EGTLEYFRAFLEDSSLK 206

Query: 439  KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
            KVWHNYSFD HVL N+G+ V G H DTMHMARLW+++R   GGYSL+ALT D  ++ + K
Sbjct: 207  KVWHNYSFDRHVLFNHGINVQGLHGDTMHMARLWNTARFKRGGYSLQALTSD--LLHQRK 264

Query: 499  KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR--EERELWI 556
            K                   +MK++FG  K +KDGS GK  TI  V +LQR  + R  WI
Sbjct: 265  K-------------------NMKELFGTPKPRKDGSPGKEKTIPNVADLQRCADFRSRWI 305

Query: 557  SYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG----KSMFDFYQEYWQPFGEILVKM 612
             YS FD+ +T  L++ L+ KL    W  D   + G    +SM++FY +Y  PFGE L  +
Sbjct: 306  RYSVFDAESTWFLHRVLQHKLELTHWIEDADVLTGQQVDRSMYEFYLKYLVPFGECLTDI 365

Query: 613  ETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGK 672
            E +GM VDR YL  +EK A  +++        WA ++C +A  MNV S  Q +QLLF   
Sbjct: 366  ERKGMNVDRAYLRRVEKTALNDRKRLEQHVLTWAKRYCEEADRMNVYSAAQKQQLLFAPY 425

Query: 673  PNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSV 732
             +++  +  LP ER F+V NTE  I  GK+ P K RNIT+R  G  L    +TA+G PSV
Sbjct: 426  SDAQGKA-ILPAERSFEVENTEQHIEPGKQRPKKKRNITIRGFG--LTPISFTASGLPSV 482

Query: 733  GGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAI 792
                L+ LA N  A       A+D                      FA ++E   AC A+
Sbjct: 483  TASVLEELAGNPEANPPKYGKAYDH---------------------FADKEEGAAACHAL 521

Query: 793  SALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEK 852
             AL E+ SI+++++NFILPLQ   ++   GRVHCSLN+NT+TGRLS+R+PNLQNQPALEK
Sbjct: 522  RALYEISSINTMLNNFILPLQ--ELADSAGRVHCSLNLNTDTGRLSSRKPNLQNQPALEK 579

Query: 853  DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
            DRYKIR AF+A  G  LIVADY QLELR+LAH+  CK+M++AF+AGGDFHSRTA+ MY +
Sbjct: 580  DRYKIRDAFVAPKGKKLIVADYSQLELRLLAHITQCKAMIEAFRAGGDFHSRTAVAMYDN 639

Query: 913  IRNAVETGQVLLEWHGE--DKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
            +  AVE+G+VLLEW       PPVPLLK+ FA+ER+ AK+LNFSIAYGKTP GL++D+ V
Sbjct: 640  VAKAVESGEVLLEWDYTKGTSPPVPLLKEKFATERKNAKILNFSIAYGKTPFGLSKDFGV 699

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP--AIKS---LTRS 1025
               EA K +D WY  RQEV  WQE     +R   +  TL+GR RR P   +KS   ++R 
Sbjct: 700  RRVEASKILDKWYGGRQEVRKWQEQAIDTARKFGYTRTLMGRYRRLPDAMLKSNSFISRK 759

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAE 1085
             ++H ERAA+NTP+QG+AAD+ M AML I+KN+RL+ +GW+++ Q+HDE+ILEGP ++AE
Sbjct: 760  AQSHAERAAVNTPIQGAAADLVMQAMLRINKNSRLRSMGWEMVCQIHDEIILEGPEDNAE 819

Query: 1086 VAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             AKAIV + M  PF  ++ L VDL VDAK  ++WY AK
Sbjct: 820  EAKAIVKDLMENPF--EHPLSVDLQVDAKIDRSWYRAK 855


>gi|301116858|ref|XP_002906157.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
 gi|262107506|gb|EEY65558.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
          Length = 1054

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/790 (47%), Positives = 494/790 (62%), Gaps = 61/790 (7%)

Query: 345  VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEAD 404
            V ++ +   A++V+  L     +  HACDTEVA+IDVK   PV +G V C S+YSGP+ D
Sbjct: 315  VNLIQDEEGARRVLQKLEELGPNHFHACDTEVAQIDVKAVGPVGNGVVTCLSLYSGPDVD 374

Query: 405  FGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHAD 464
            +GNG   +WVD LD      L  F  F E  +  KVWHNYSFD HVL N+G+ V G   D
Sbjct: 375  YGNG-PYVWVDNLDSA-EGTLQLFKEFLESKNYLKVWHNYSFDRHVLFNHGINVQGLGGD 432

Query: 465  TMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIF 524
            TMHMARLW+++R   GGYSLE+LT D  ++ + KK                    MK++F
Sbjct: 433  TMHMARLWNTARFQNGGYSLESLTAD--LLLQRKK-------------------PMKELF 471

Query: 525  GRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINTLKLYKSLKKKLLEMSW 582
            G  KLKKDGS GK   +  VEELQR  E R+ WI YS +D+ +T  L++ L+ KL +  W
Sbjct: 472  GIPKLKKDGSKGKERIMPTVEELQRFPEFRKRWIRYSVYDAESTWFLHRVLQDKLDQTFW 531

Query: 583  --KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVN 640
              K +G      SM++FY+EY  PFGE L  +E  GM VD EYL+ +EK A  ++     
Sbjct: 532  FEKPNGGESQVGSMYEFYREYIVPFGECLTDIERRGMHVDLEYLAGVEKQALEDRARLEK 591

Query: 641  RFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEG 700
               +WAS++C +++ +N+ S  Q +QLLF    N K   + LP ER F+V NTEG I EG
Sbjct: 592  LVLQWASRYCEESERINLYSAAQKQQLLFAPYFNKKKKEQVLPAERSFEVENTEGFIEEG 651

Query: 701  KKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDS 760
            K+   K RNIT+R +G+  P   +TA+G P+   + LK LA +  A              
Sbjct: 652  KQKAKKKRNITIRGLGI--PPTHFTASGLPAASAEVLKDLAGHPEAN------------- 696

Query: 761  GCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGK 820
                  +Y  A       F  ++E   AC A+ AL ++ SI+++++NFILPLQ   ++  
Sbjct: 697  ----PPQYGRAYGH----FEDKEEGAAACVALKALFDISSINTMLNNFILPLQ--ELADS 746

Query: 821  NGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELR 880
            N RVHCSLN+NT+TGRLS+R+PNLQNQPA+ KDRYKIR AF A PG  LIVADY QLELR
Sbjct: 747  NSRVHCSLNLNTDTGRLSSRKPNLQNQPAMGKDRYKIRDAFTAPPGKKLIVADYSQLELR 806

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDK-PPVPLLK 938
            ++AH+  CK+M++AFKAGGDFHSRTAM MYP++  AVE G+ LLEW H   K PP PLLK
Sbjct: 807  LMAHITQCKAMIEAFKAGGDFHSRTAMGMYPYVAKAVENGEALLEWDHTTGKEPPAPLLK 866

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D +  ER+ AK+LNFSIAYGKT  GLA+D+ VS +EA  T++ WY++R EV  WQ+   +
Sbjct: 867  DKYGDERKNAKVLNFSIAYGKTAFGLAKDFNVSRKEAADTLEKWYSDRGEVRDWQKKAIE 926

Query: 999  ESRIDNHVHTLLGRARRFPAI----KSLT-RSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
             +R   +  TLLGR RR P       S+T +  R H ERAAINTP+QG+AADV M AML+
Sbjct: 927  TARTFGYTRTLLGRYRRLPDAMLRDDSMTSKKARGHAERAAINTPIQGAAADVVMQAMLQ 986

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            +  + RL+ELGW ++ Q+HDE+I+EGP ES + A  +VV  M  PF  +  L V L VDA
Sbjct: 987  VHHSPRLRELGWGMVSQIHDEIIVEGPEESVDEAMKLVVHLMENPF--QKPLSVALEVDA 1044

Query: 1114 KCAQNWYSAK 1123
                +W+ AK
Sbjct: 1045 NVDDSWFKAK 1054


>gi|224011788|ref|XP_002294547.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
            CCMP1335]
 gi|220969567|gb|EED87907.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
            CCMP1335]
          Length = 745

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/770 (46%), Positives = 486/770 (63%), Gaps = 72/770 (9%)

Query: 369  VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGK---SCIWVDLLDGGGRDLL 425
            +HACDTEV  ID+K+  PV HG V C S+YSG + D+G G    + +W+D LD   +DLL
Sbjct: 33   IHACDTEVMDIDLKEVGPVGHGYVTCISVYSGEDFDYGLGDGPGTMLWIDNLDDA-KDLL 91

Query: 426  NEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLE 485
             EF P+ ED  + KVWHNY FD HVL N G+ V GF  DTMHMARL D+SR     YSLE
Sbjct: 92   QEFKPWLEDAKVMKVWHNYGFDRHVLFNEGINVLGFGGDTMHMARLSDTSRMK---YSLE 148

Query: 486  ALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVE 545
            +LT              +D+ K         K+ MK+IFG  +L+KDG+ G I  I PVE
Sbjct: 149  SLT--------------EDLLKQR-------KVPMKEIFGVPRLRKDGTDGAIVDIPPVE 187

Query: 546  ELQREE--RELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
             +QR+   RE WI YSA D+ +T  LY+ LKK+LL++ W      +   +M  +YQ + +
Sbjct: 188  VMQRDPKFRESWIKYSAMDAKSTYNLYQHLKKELLKVGW------IRQMNMMQYYQLHMR 241

Query: 604  PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC-PDAKYMNVGSDT 662
            PFGE+L  +E  GMLV ++YL+++E  AR ++E  V  FR+WA K   PD   MN+ S  
Sbjct: 242  PFGELLTDLERRGMLVAKDYLADVEVQARKDREGHVEAFRQWAFKQLGPDGLAMNLASSV 301

Query: 663  QLRQLLFGGKPNSKDDSESLPIERIFK-----VPNTEGVIAEGKKTPSKFRNITLRSIGV 717
            QL   LFGG  N+K    +  + R+FK     +P+         +   K+ ++T+RS+G 
Sbjct: 302  QLTTFLFGGAENAKTKEPTEKV-RVFKTAREDIPDDAMEAYPKNEQEPKYVDVTVRSLG- 359

Query: 718  DLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNK 777
             +  + +T +G PS   D L+ LA +  A+      A++                     
Sbjct: 360  -MTPDKFTVSGAPSATADVLRKLAGDPFADPPKYGAAYEF-------------------- 398

Query: 778  IFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRL 837
             F   +   EAC A  +L  + SID++I+NF+  LQ   ++    RVHCSLNINTETGRL
Sbjct: 399  -FGGGEAGHEACVAFFSLTAIGSIDTMIANFLTSLQ--TLADDQNRVHCSLNINTETGRL 455

Query: 838  SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKA 897
            S+R+PN+QNQPALEKD+YKIRQAF+A PGN+LIVADYGQLELR+LA + +C SM+DAF+A
Sbjct: 456  SSRKPNMQNQPALEKDKYKIRQAFMASPGNNLIVADYGQLELRLLASMTDCTSMIDAFEA 515

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
            GGDFHSRTA+ M+ +I++AV  G VLLEW + + +PP P+LKD +ASERRKAK LNFSIA
Sbjct: 516  GGDFHSRTALGMFKYIQDAVANGDVLLEWDYSKGEPPKPMLKDQYASERRKAKTLNFSIA 575

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YGKT  GL++DW VS++EA++ +  WY+ R EV  WQ+  KK +R      TL+GR R  
Sbjct: 576  YGKTAHGLSQDWGVSLKEAEEMLRAWYDSRPEVEKWQQNTKKAARNYGITRTLMGRYRHL 635

Query: 1017 P-AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEV 1075
            P A++   R +  H ERA+INTP+QG AADVAM AM++I+ +  LK+LGW LL+QVHDEV
Sbjct: 636  PHAMEGNNRKRLGHAERASINTPIQGGAADVAMMAMIKINDSLLLKKLGWILLMQVHDEV 695

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFN-GKNNLRVDLSVDAKCAQ-NWYSAK 1123
            ILEGP E+AE A   VV+CM +P+  G +  +V L VD      NWY AK
Sbjct: 696  ILEGPEETAEEAFEEVVKCMQEPWVLGLDKTKVPLLVDGSFKHNNWYDAK 745


>gi|413919674|gb|AFW59606.1| chloroplast DNA polymerase [Zea mays]
          Length = 1154

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/542 (59%), Positives = 396/542 (73%), Gaps = 26/542 (4%)

Query: 314 EGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACD 373
           E T Q  +     + E L+  R  L++ Y  V+VVDNV +A+ VV +LT KY++ +HACD
Sbjct: 197 EETVQPSRTRAPSSQESLDA-RKALSTIYDKVLVVDNVMSARSVVQLLTTKYRNYIHACD 255

Query: 374 TEVAKIDVKQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAP 430
           TEVA I+VKQETPV HG+V CFSIYSG    EADFGNGK+CIWVD+LDGG  D+L EF P
Sbjct: 256 TEVANINVKQETPVGHGKVTCFSIYSGTKGAEADFGNGKTCIWVDVLDGGP-DVLMEFVP 314

Query: 431 FFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGD 490
           FFED SI+KVWHNYSFD+HV+ENYG+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D
Sbjct: 315 FFEDSSIRKVWHNYSFDSHVIENYGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTND 374

Query: 491 RKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQRE 550
            +VM    K  QK           +GK SMK IFGR+K+KKDGS GKI+ I PVE LQRE
Sbjct: 375 HRVMGVVPKELQK-----------IGKRSMKTIFGRKKIKKDGSEGKITAIEPVEILQRE 423

Query: 551 ERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILV 610
           +RELWI YS+ DS++TL+LY+SLK KL    W  DG P PG S++DFY+EYW PFG ILV
Sbjct: 424 DRELWICYSSLDSMSTLRLYESLKSKLERKPWTFDGYPRPGGSLYDFYEEYWCPFGAILV 483

Query: 611 KMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
           KMET GMLVDR YLSEIEKVA A++E+A ++FRKWASK+CPDAKYMNV SDTQ+RQL FG
Sbjct: 484 KMETAGMLVDRAYLSEIEKVAVAQRESAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFG 543

Query: 671 GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWP 730
           G  N     + LP  +  KVPN E  ++EGKK P K+R I L SI  DL T+++TA+GWP
Sbjct: 544 GIENIYKSGDFLPKSKAIKVPNNETAVSEGKKVP-KYRTIDLFSIVEDLKTDIFTASGWP 602

Query: 731 SVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYK-------GAVASNNKIFATEQ 783
           SV G AL+ LA  + +  D V    D++D  C   +E          +  +    F   +
Sbjct: 603 SVSGAALRNLAGKVPS--DLVYSTDDVNDDECGIHSEISHCDLEDTSSYGTAYDAFGGGK 660

Query: 784 EAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPN 843
           E +EAC AI+ALCE+CSI+SLISNFILPLQG+++S K GR+HCSLNINTETGRLSAR PN
Sbjct: 661 EGKEACHAIAALCEICSINSLISNFILPLQGNHISCKEGRIHCSLNINTETGRLSARAPN 720

Query: 844 LQ 845
           LQ
Sbjct: 721 LQ 722



 Score =  461 bits (1185), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/281 (78%), Positives = 245/281 (87%), Gaps = 3/281 (1%)

Query: 846  NQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
            NQPALEKDRYKIRQAF+A PGN+LIVADYGQLELRILAHLA+CKSMLDAFKAGGDFHSRT
Sbjct: 874  NQPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLADCKSMLDAFKAGGDFHSRT 933

Query: 906  AMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPV 962
            AMNMY HIR AVE  +V+LEWH   G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKT  
Sbjct: 934  AMNMYQHIREAVEEEKVILEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAH 993

Query: 963  GLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSL 1022
            GLARDWKVSV+EAK T+ LWY++R+EVL WQ  +K+ +     V+TLLGR+RRFP +   
Sbjct: 994  GLARDWKVSVKEAKDTLKLWYSDRKEVLAWQMKQKQLAHEKREVYTLLGRSRRFPNMAHA 1053

Query: 1023 TRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSE 1082
            T  QR HIERAAIN PVQGSAADVAMCAMLEI +N RLKELGW LLLQVHDEVILEGPSE
Sbjct: 1054 TSGQRGHIERAAINAPVQGSAADVAMCAMLEIDRNTRLKELGWTLLLQVHDEVILEGPSE 1113

Query: 1083 SAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            SAE+AK+IVVECMSKPF G N L+VDL+VDAKCAQNWY+AK
Sbjct: 1114 SAELAKSIVVECMSKPFYGTNILKVDLAVDAKCAQNWYAAK 1154


>gi|449018209|dbj|BAM81611.1| plant organellar DNA polymerase [Cyanidioschyzon merolae strain 10D]
          Length = 948

 Score =  639 bits (1649), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 356/771 (46%), Positives = 464/771 (60%), Gaps = 63/771 (8%)

Query: 359  WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
            WM   ++    HA DTE   ID  +++PV  G+VIC S + GP  DFGNG   +W+D   
Sbjct: 235  WM---EHSQCYHAWDTETIGIDPTEDSPVGKGQVICLSAFCGPRVDFGNGPR-LWIDNF- 289

Query: 419  GGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRT 478
            G  +  L+ F  +FE+  I KVWHNYSFD  VL N+G+   GF  DTMHM+RL D++R  
Sbjct: 290  GDAQGTLDYFKSYFENEEIPKVWHNYSFDRAVLYNHGIDCRGFGGDTMHMSRLLDAARLR 349

Query: 479  EGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKI 538
               YSLEALT D  +                       K SM+++FGR ++ K+G  GK 
Sbjct: 350  ---YSLEALTEDFLLRK---------------------KRSMRELFGRPRILKNGKPGKE 385

Query: 539  STIAPVEELQREEREL--WISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFD 596
              +    ELQ +   +  W+ YS +D+  T  L    ++ L E   ++ G     ++M+D
Sbjct: 386  IIVPSTSELQMDPETMYHWVQYSTYDAEATWYLRDKFERLLREQ--EILGSE---RTMYD 440

Query: 597  FYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYM 656
             Y E + PFG +L  ME  G  +D   L + ++VA A+++     FR+WA+++C DA +M
Sbjct: 441  LYTECFVPFGAVLTDMERIGFKIDIARLQDAQRVAEADRQRYTAMFREWAARYCADAIHM 500

Query: 657  NVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG 716
            N  S+ Q RQ  F    N K D E LP ER F+V NTE V+    K P K R I +  +G
Sbjct: 501  NAESENQKRQFFFAPVRNKKTD-ELLPAERTFEVENTEQVVESAGKKPRKKRTIQISGLG 559

Query: 717  VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNN 776
              LP   +TA+GWP+     L+ LA   SA        +D       E  E         
Sbjct: 560  --LPPVAFTASGWPACTAVVLRKLAGTPSASPAQGGLLYDFLTKERRESAE--------- 608

Query: 777  KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGR 836
                   +A  AC A+ AL E  ++ +L+ +FI PLQ   +  KN R+H SLN+NTETGR
Sbjct: 609  -------DALAACKAVEALLEAGAVGTLLDSFIDPLQ--KMVDKNHRIHASLNLNTETGR 659

Query: 837  LSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFK 896
            LS+RRPNLQNQPALEKDRY++R AF    GN+LIVADYGQLELR+LAH+ANC+SM++AFK
Sbjct: 660  LSSRRPNLQNQPALEKDRYRVRDAFTCEEGNTLIVADYGQLELRLLAHIANCRSMIEAFK 719

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLE----WHGEDKPPVPLLKDAFASERRKAKMLN 952
            AGGDFHSRTA +MYP+I  +V  G VLLE     +G+     PLLKD +A ERR+AK LN
Sbjct: 720  AGGDFHSRTASSMYPYIAESVARGDVLLEPEPNANGQATSSKPLLKDVYAGERRRAKTLN 779

Query: 953  FSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGR 1012
            FSIAYGKTP GLARDW  S++EA++TVD WY +R EV  WQE   K ++    V TLLGR
Sbjct: 780  FSIAYGKTPAGLARDWGTSLKEARETVDAWYRDRPEVRAWQERAIKFAQTHGFVKTLLGR 839

Query: 1013 ARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVH 1072
             R  P I S   +   H ERAAINTP+QGSAADV M AML I  NARL ELGW+++LQVH
Sbjct: 840  RRPLPEINSPNTNAARHAERAAINTPLQGSAADVVMKAMLLIHSNARLAELGWRMILQVH 899

Query: 1073 DEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            DE+ILEGP E+ E A+AIVV  M +PF  +  LRVDL+V    A+ W+ AK
Sbjct: 900  DEIILEGPEETVEEAEAIVVRLMRQPF--REPLRVDLAVSVAHAKTWFRAK 948


>gi|403355195|gb|EJY77168.1| DNA polymerase I family protein [Oxytricha trifallax]
          Length = 887

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 342/808 (42%), Positives = 471/808 (58%), Gaps = 82/808 (10%)

Query: 347  VVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFG 406
            ++ +   A++VV +L   Y   +HA DTE   ID K+E+PV HG++IC +++ GP+ DFG
Sbjct: 131  IIRSREEARRVVQIL-KAYPDRIHAWDTETIHIDAKEESPVGHGQIICATVFIGPDVDFG 189

Query: 407  NGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
            NG      +  D    + + EF  + EDP+  K WHNY +D H+  N+G+ V GF ADTM
Sbjct: 190  NGPRLFIDNYADA--LNTIMEFKEYLEDPNYLKCWHNYGYDRHIFFNHGINVQGFGADTM 247

Query: 467  HMARLWDSSRRTEGGYSLEAL--------TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKI 518
            HMARL+D S +    YSL AL        T  +++M +D +  QK +     +E  +  +
Sbjct: 248  HMARLYDPS-KMPNQYSLSALSEILKGKITEQKQLMIQDLR--QKLLVDPQKNETQLSTL 304

Query: 519  SMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLL 578
                        KDG+ GK+ T   VE +   + E W+ YS +D+  T  L ++L K L+
Sbjct: 305  ------------KDGTKGKVLTFPDVEVIHTNKVEEWVGYSCYDAEITFFLRETLSKLLM 352

Query: 579  EMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAA 638
                  +G     + M   Y +YW+ FGE+L  ME EG+ +D EYL EI+ +A  ++   
Sbjct: 353  TQQTDEEGM----QDMLGLYSKYWRAFGEVLTDMEREGIKIDVEYLKEIQLIAEKDKSQY 408

Query: 639  VNRFRKWASKHCPDAKYMNVGSDTQLRQLLF------GGKPNSKDDSESL---PIERIFK 689
              +F +W  K   DAK  N  S  Q++QLLF      G KP   +D E +   P ER+FK
Sbjct: 409  EEKFLEWVYKIQEDAKEFNPASAHQIQQLLFAPFNKRGKKPTFDNDGEIMYEYPKERLFK 468

Query: 690  VPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYD 749
            V NT G I EGKK   K R + +  +G+  P   YT +  PS     +K LA        
Sbjct: 469  VENTAGFIKEGKKQALKQREMKITGLGI--PALDYTQSSLPSADTPVIKRLA-------- 518

Query: 750  CVDGAHDLDDSGCTEETEYKGAVASNNKIFA---TEQEAREACDAISALCEVCSIDSLIS 806
               G  D            KG        F     E+E +E C A+    +   I++L++
Sbjct: 519  ---GRPD------------KGEFGEAYNFFLRQDKEEEGKECCWALWNWIQYKGIETLLN 563

Query: 807  NFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG 866
             +ILPLQ      ++GR+HCS+N+NTETGRLS R+PNLQNQPAL+KD+YKIR+AF+A  G
Sbjct: 564  TYILPLQ--KAPDQHGRIHCSMNLNTETGRLSCRKPNLQNQPALDKDKYKIRRAFVADQG 621

Query: 867  NSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW 926
            N L+VADYGQLELR+LAH+ANCK M+DAFK GGDFHSRTA+ MYP I+  +E+G++LLEW
Sbjct: 622  NKLVVADYGQLELRVLAHMANCKGMIDAFKLGGDFHSRTALGMYPEIKKDLESGEILLEW 681

Query: 927  -HGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNE 985
             + + K P PLLKD +A+ER+KAK++NFSIAYGKT  G  +DW  S EEA+ TV+LWY++
Sbjct: 682  DNSKGKAPKPLLKDKYANERKKAKIMNFSIAYGKTVHGFMKDWNCSKEEAQATVELWYSD 741

Query: 986  RQEVLTWQEARKKESRIDNHVHTLLGRARRFPA--IKSLTRS--------QRNHIERAAI 1035
            R EV  WQ+  + ++       TLLGR R      I S T           + H  RAAI
Sbjct: 742  RPEVKEWQKMIQSKAITRGWTQTLLGRYRNLTKHFIMSSTNEGYSFKSNMMKEHGLRAAI 801

Query: 1036 NTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECM 1095
            NTP+QG AAD+ + AM+++ K+  LK+LG+KLLLQ+HDEVILEGP + A+ A   V+  M
Sbjct: 802  NTPIQGGAADIVIAAMVKLHKDQMLKDLGYKLLLQIHDEVILEGPEKYAKEALERVIYIM 861

Query: 1096 SKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
              P +  N LRV L VDAK A  WY  K
Sbjct: 862  ENPLD--NRLRVKLEVDAKIATTWYEGK 887


>gi|219111043|ref|XP_002177273.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411808|gb|EEC51736.1| pol1-like DNA polymerase, partial [Phaeodactylum tricornutum CCAP
            1055/1]
          Length = 774

 Score =  600 bits (1548), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 353/811 (43%), Positives = 481/811 (59%), Gaps = 69/811 (8%)

Query: 345  VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEAD 404
            V +V   + A+KV+  L      + HACDTEV  ID+K   PV +G V C S+YSGP+ D
Sbjct: 1    VTIVRTKAQAQKVLKRLFAADPSIFHACDTEVMAIDLKSVGPVGNGYVTCASVYSGPDFD 60

Query: 405  FGNGK---SCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGF 461
            +G G+   SC+W+D LD     +L EF  +FE+P   KVWHNY FD HV+ N G+ V G 
Sbjct: 61   YGLGEGPGSCLWIDNLDDAA-GILQEFKAWFENPRFLKVWHNYGFDRHVMWNEGIDVQGL 119

Query: 462  HADTMHMARLWDSSRRTE---GGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKI 518
              DTMHMARL D+ R      GGYSLEALT D  ++S  K+                   
Sbjct: 120  GGDTMHMARLQDTCRSKMAKGGGYSLEALTAD--LLSRRKQ------------------- 158

Query: 519  SMKDIFGRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINTLKLYKSLKKK 576
             MK++FG  +L+KDGS G +  I PVE +QR  E R +WI YS +D+  T  L + L+K+
Sbjct: 159  PMKELFGVHRLRKDGSEGALVDIPPVESMQRDPESRSMWIKYSCYDAEGTWLLREELEKR 218

Query: 577  LLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVD-REYLSEIEKVARAEQ 635
            L    W      +  K+++D+Y  + +PF E+L  ME  G+ V+ ++YL  +E+ AR ++
Sbjct: 219  LKMKPW------IGNKNLWDYYFLHMRPFAEVLTDMERRGVRVNAKDYLFNVERKAREDR 272

Query: 636  EAAVNRFRKWA-SKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTE 694
                  FR+WA SK  PD   +N+ S TQL+ L FGG  N K   +S  + R+ KVP  E
Sbjct: 273  VHHSKIFREWAASKIGPDGLALNLSSATQLQALFFGGSENLKTKEQSETV-RVVKVPRDE 331

Query: 695  -------GVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAE 747
                    +  + K    + R+  L       P +        ++  D L+ +      +
Sbjct: 332  IPEDALHALENQSKAEAQRIRDHLLA------PVQDKNIDDLETMSDDDLRDMLITRELQ 385

Query: 748  YDCVDGAH------DLD-DSG---CTEETEYKGAVASNNKIF--ATEQEAREACDAISAL 795
            +    G        DL+  SG       T+  G + +N  +F  A E   +E C+A+ +L
Sbjct: 386  FAGTRGEMLDRLRADLEFTSGVLNAVSPTDQDGHLFTNTTLFLQAYENFGKEGCEALFSL 445

Query: 796  CEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRY 855
            C + SID++I+ F+  LQ   V  K+ RVHCSLN+NTETGRLS+R PNLQNQPALEKD Y
Sbjct: 446  CAIKSIDTMIATFLTSLQ-ERVDNKS-RVHCSLNLNTETGRLSSRGPNLQNQPALEKDTY 503

Query: 856  KIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRN 915
            +IR+AF A PGN+LIVADYGQLELR+LA +  CKSM++AF+AGGDFHSRTAM+M+ +++ 
Sbjct: 504  QIRKAFEASPGNNLIVADYGQLELRLLASMTGCKSMIEAFEAGGDFHSRTAMDMFDYVKA 563

Query: 916  AVETGQVLLEW-HGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEE 974
             V++G+ LLEW + +  PP PL+KD FASERRKAK LNFSIAYGKT  GL+ DW V+++E
Sbjct: 564  KVDSGEALLEWDYAKGDPPKPLVKDLFASERRKAKTLNFSIAYGKTAFGLSDDWGVTLQE 623

Query: 975  AKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAA 1034
            A++ +  WY  R EV  WQ   K  +R   +  TL+GR R  P  KS  +      ERA+
Sbjct: 624  AEEMLKAWYKARPEVDVWQTQVKLTARNHGYTRTLMGRYRDLPEAKSKRQKFAKQAERAS 683

Query: 1035 INTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVEC 1094
            INTP+QG AAD+AM AM +I+ N +LK LGW LLLQVHDEV+LEGP E+A+ A   V+  
Sbjct: 684  INTPIQGGAADIAMMAMNKINANEKLKALGWILLLQVHDEVMLEGPEETAKEAFDEVLNN 743

Query: 1095 MSKPFN-GKNNLRVDLSVDAKCA-QNWYSAK 1123
            M +P+  G     V L VD     + WY AK
Sbjct: 744  MQEPWVFGLMKTAVPLLVDGSYTHKTWYDAK 774


>gi|359817569|gb|AEV66614.1| mitochondrial DNA polymerase [Oxytricha trifallax]
          Length = 982

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 342/836 (40%), Positives = 476/836 (56%), Gaps = 108/836 (12%)

Query: 347  VVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFG 406
            ++ +   A++VV +L   Y   +HA DTE   ID K+E+PV HG++IC +++ GP+ DFG
Sbjct: 196  IIRSREEARRVVQIL-KAYPDRIHAWDTETIHIDAKEESPVGHGQIICATVFIGPDVDFG 254

Query: 407  NGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
            NG      +  D    + + EF  + EDP+  K WHNY +D H+  N+G+ V GF ADTM
Sbjct: 255  NGPRLFIDNYADA--LNTIMEFKEYLEDPNYLKCWHNYGYDRHIFFNHGINVQGFGADTM 312

Query: 467  HMARLWDSSRRTEGGYSLEAL--------TGDRKVMSEDKK---------------AYQK 503
            HMARL+D S +    YSL AL        T  +++M +D +                 Q 
Sbjct: 313  HMARLYDPS-KMPNQYSLSALSEILKGKITEQKQLMIQDLRQKLLVDPQKNETQLSCIQS 371

Query: 504  DMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDS 563
             ++ G  DE    K+++ ++FG  +  KDG+ GK+ T   VE +   + E W+ YS +D+
Sbjct: 372  YLTTGIKDE----KVNIIELFGDYRTLKDGTKGKVLTFPDVEVIHTNKVEEWVGYSCYDA 427

Query: 564  INTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREY 623
              T  L ++L K L+      +G     + M   Y +YW+ FGE+L  ME EG+ +D EY
Sbjct: 428  EITFFLRETLSKLLMTQQTDEEGM----QDMLGLYSKYWRAFGEVLTDMEREGIKIDVEY 483

Query: 624  LSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF------GGKPNSKD 677
            L EI+ +A  ++     +F +W  K   DAK  N  S  Q++QLLF      G KP   +
Sbjct: 484  LKEIQLIAEKDKSQYEEKFLEWVYKIQEDAKEFNPASAHQIQQLLFAPFNKRGKKPTFDN 543

Query: 678  DSESL---PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGG 734
            D E +   P ER+FKV NT G I EGKK   K R + +  +G+  P   YT +  PS   
Sbjct: 544  DGEIMYEYPKERLFKVENTAGFIKEGKKQALKQREMKITGLGI--PALDYTQSSLPSADT 601

Query: 735  DALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFA---TEQEAREACDA 791
              +K LA           G  D            KG        F     E+E +E C A
Sbjct: 602  PVIKRLA-----------GRPD------------KGEFGEAYNFFLRQDKEEEGKECCWA 638

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALE 851
            +    +   I++L++ +ILPLQ +    ++GR+HCS+N+NTETGRLS R+PNLQNQPAL+
Sbjct: 639  LWNWIQYKGIETLLNTYILPLQKA--PDQHGRIHCSMNLNTETGRLSCRKPNLQNQPALD 696

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
            KD+YKIR+AF+A  GN L+VADYGQLELR+LAH+ANCK M+DAFK GGDFHSRTA+++  
Sbjct: 697  KDKYKIRRAFVADQGNKLVVADYGQLELRVLAHMANCKGMIDAFKLGGDFHSRTALDL-- 754

Query: 912  HIRNAVETGQVLLEW-HGEDKPPVPLLKDA-------------FASERRKAKMLNFSIAY 957
                  E+G++LLEW + + K P PLLKD              +A+ER+KAK++NFSIAY
Sbjct: 755  ------ESGEILLEWDNSKGKAPKPLLKDKQVVLIFNLSTFIRYANERKKAKIMNFSIAY 808

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            GKT  G  +DW  S EEA+ TV+LWY++R EV  WQ+  + ++       TLLGR R   
Sbjct: 809  GKTVHGFMKDWNCSKEEAQATVELWYSDRPEVKEWQKMIQSKAITRGWTQTLLGRYRNLT 868

Query: 1018 A--IKSLTRS--------QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
               I S T           + H  RAAINTP+QG AAD+ + AM+++ K+  LK+LG+KL
Sbjct: 869  KHFIMSSTNEGYSFKSNMMKEHGLRAAINTPIQGGAADIVIAAMVKLHKDQMLKDLGYKL 928

Query: 1068 LLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LLQ+HDEVILEGP + A+ A   V+  M  P +  N LRV L VDAK A  WY  K
Sbjct: 929  LLQIHDEVILEGPEKYAKEALERVIYIMENPLD--NRLRVKLEVDAKIATTWYEGK 982


>gi|323451403|gb|EGB07280.1| hypothetical protein AURANDRAFT_27651 [Aureococcus anophagefferens]
          Length = 831

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 357/807 (44%), Positives = 490/807 (60%), Gaps = 78/807 (9%)

Query: 345  VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEAD 404
            V V D+V AA+ V+  L      + HA DTEV  ID+ +E PV +G V CF++YSGP+  
Sbjct: 75   VYVCDSVGAAEAVLARLEAADPAIYHAVDTEVDDIDLSREGPVGNGRVTCFTVYSGPDFS 134

Query: 405  F---GNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGF 461
            +     GK+ ++VD +D     +L+ FAP+F D S +KVWHNY FD HV+EN+GL   GF
Sbjct: 135  YDGEAAGKA-LFVDCVDAA---VLDVFAPWFADESRRKVWHNYGFDRHVVENHGLACRGF 190

Query: 462  HADTMHMARLWDSSR-RTEGG--YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKI 518
              DTMHMARL DSSR RT GG  YSLEAL+ D              +S G        K+
Sbjct: 191  AGDTMHMARLHDSSRLRTHGGDGYSLEALSRDL-------------ISAGE------AKV 231

Query: 519  SMKDIFGR--RKL----KKDGSAGKISTIAPVEELQREE----RELWISYSAFDSINTLK 568
            SMK +F    RK     + +GSA + +    ++ L+ +     R+ ++ Y+A+D+ +T +
Sbjct: 232  SMKALFPEFFRKTAFADRANGSASRDAARRGLDILRMQTDDATRDAFVCYAAYDAKSTWQ 291

Query: 569  LYKSLKKKLLEMSWK--LDGKP----VPGKSMFDFYQEYWQPFGEILVKMETEGMLVDR- 621
            ++ +L+++L   +W    D  P     P K+M+DFY+ Y+ PFG++L  ME  G+ VD  
Sbjct: 292  VHDALRRRLERQAWAPMTDDPPRSPETP-KTMWDFYERYFVPFGKVLTDMEAAGIYVDAA 350

Query: 622  EYLSEIEKVARAEQEAAVNRFRKWA-SKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSE 680
             +L+++EK A A++ AA+  FR WA  +  PD   +N  S  Q++ LLFGG  N K   E
Sbjct: 351  SHLTDVEKAATADKAAALKTFRDWAVERMGPDGALLNPASSKQIQTLLFGGAMNQKT-GE 409

Query: 681  SLPIERIFKVPNTEGVIAEGKKTPS-KFRNITLRSIGVDLPTEMYTATGWPSVGGDALKT 739
             L  ER F V     ++ +G    S + R + +RS+G+  PT+ YT +G PS   D L+ 
Sbjct: 410  YLETEREFDVDLPPELLPDGDDGASDRTRKLLVRSVGL-TPTK-YTTSGAPSCTADVLRE 467

Query: 740  LARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVC 799
            LA                        T+      + +  F       EAC A+ ALC + 
Sbjct: 468  LA---------------------GRPTDDPPVYGAAHAGFGGGPAGEEACVALDALCNMG 506

Query: 800  SIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQ 859
            SID++++ FI PL+   ++    RVHCSLN+NTETGRLS+RRPNLQNQPALEKD+Y IR+
Sbjct: 507  SIDTMLNTFINPLR--LLADDESRVHCSLNLNTETGRLSSRRPNLQNQPALEKDQYFIRK 564

Query: 860  AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
            AF A  G +L+VADYGQLELR+LAH+A C+SML AF+ GG FHSRTA+ M+ H+R AVE+
Sbjct: 565  AFRAKEGCALVVADYGQLELRLLAHVARCESMLVAFREGGCFHSRTAVGMFDHVREAVES 624

Query: 920  GQVLLE-WHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKT 978
            G VLLE     +    PL+KD +ASERR+AK LNFSIAYGKT  GLA+DW V  EEA+  
Sbjct: 625  GAVLLEKGSSPEDSDKPLVKDVYASERRRAKTLNFSIAYGKTAHGLAKDWGVKQEEAQDM 684

Query: 979  VDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTP 1038
            +  WY++R EV  WQ+    +++   +  TL+GR R  P I    R+ +    RAAINTP
Sbjct: 685  LRAWYDDRPEVEAWQKRTIADAKRTGYTTTLMGRRRNLPDILEKNRALQGRGARAAINTP 744

Query: 1039 VQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKP 1098
            +QGSAADV M AML+I+++  LK+LG+ LLLQ+HDEVILEGP +  E A A V + M  P
Sbjct: 745  IQGSAADVVMMAMLKIAESKTLKDLGYTLLLQIHDEVILEGPEQHKEAALAEVTKLMEAP 804

Query: 1099 FN--GKNNLRVDLSVDAKCAQNWYSAK 1123
            F+  G + L VDL+VDAK A  WY AK
Sbjct: 805  FDGIGLDPLHVDLTVDAKTAATWYEAK 831


>gi|145510849|ref|XP_001441352.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408602|emb|CAK73955.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score =  583 bits (1504), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 344/838 (41%), Positives = 477/838 (56%), Gaps = 89/838 (10%)

Query: 345  VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEAD 404
            V +V N++ AK+V+ +L NKYK   HA DTE   IDVK ETP++ G +IC S ++GPE +
Sbjct: 51   VTIVRNINDAKRVIDIL-NKYKKQPHAWDTETIDIDVKSETPINRGRLICASAFAGPEVN 109

Query: 405  FGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHAD 464
            FGNG   +++D       DL+  F  +FED  I K+WHNY FD H+  N G+ V GF  D
Sbjct: 110  FGNGPR-LFIDNF-AQNSDLIMLFKEYFEDEKILKIWHNYGFDKHIFGNNGINVRGFFGD 167

Query: 465  TMHMARLWDSSRRTEGGYSLE--ALTGDRKVMSEDKKAYQKDMSKGN-TDE-----GFMG 516
            TMHMARL D S++ +  YSL   +L  + ++     K  +  ++K N TDE        G
Sbjct: 168  TMHMARLLDPSKQPQE-YSLAKLSLAYEEEIKLVKTKRMECLLAKPNLTDEERSSLQLFG 226

Query: 517  --------KISMKDIFGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINT 566
                    K SMK IFG+ K  K+G   K+     + ++    + +  W+ YS  DS  T
Sbjct: 227  EHLLDINLKTSMKQIFGQNKELKNGQVSKLKVYPKILQMHCLPQYINQWVEYSTLDSEIT 286

Query: 567  LKLYKSLKKKLLEMSWKLDGKPVPG-----------KSMFDFYQEYWQPFGEILVKMETE 615
              L  +LK  L +     + KP               S+ D Y +YW   GEIL ++E E
Sbjct: 287  YFLCLTLKDLLNKTKIFYNLKPTDSDYQTKQNEFGINSLGDIYSKYWNSLGEILTELERE 346

Query: 616  GMLVDREYLSEIEKVARAEQEAAVNRFRKWA-SKHCPDAKYMNVGSDTQLRQLLF----- 669
            GM VD +++  I+  A  + +     F KW  +    D    N  S  QL+QL F     
Sbjct: 347  GMQVDMDHVKNIKVKAEEDMKQYEQNFIKWVQTTQEGDVSQFNCSSTQQLQQLFFAPCKK 406

Query: 670  ----------------------GGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKF 707
                                  G K + + + E LP  + F++ N   ++ E ++TP K+
Sbjct: 407  QQVKKTPQTMKEEEEEDEYLSDGRKKSVRKEVEDLPEVKGFQIDNIHQIVKENQRTPLKY 466

Query: 708  RNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETE 767
              + ++ +G++ P   YT +G P    +ALK LA                   G  E+ +
Sbjct: 467  TEMLIKGLGIE-PLS-YTPSGMPQADYNALKQLA-------------------GDVEKQQ 505

Query: 768  YKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS 827
            Y G +  +       Q+  +AC AI+ L E+ SI+ L+  FI+PL    ++  +GR+H S
Sbjct: 506  Y-GLIYHHFAGKGEPQKGIDACIAINDLLELKSIEVLLHTFIIPL--IELTDPSGRIHTS 562

Query: 828  LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            +NINTETGRLS+R PNL NQPALEKDRYKIR++FIA  GN LIVADYGQLELR+LAH+  
Sbjct: 563  ININTETGRLSSRNPNLLNQPALEKDRYKIRKSFIAKKGNKLIVADYGQLELRVLAHMTK 622

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKDAFASERR 946
            CK+M+DAF  GGDFHSRT + M+PHI+  ++ G++L+EW   + K P PL+KD +A+ERR
Sbjct: 623  CKAMIDAFLKGGDFHSRTVITMFPHIQEEIDKGELLIEWDKSKGKAPAPLVKDKYAAERR 682

Query: 947  KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006
            KAK+LNFSIAYGKT  G A+DW+  V+EA+KT+D W+ +R+EV  WQ   +  ++     
Sbjct: 683  KAKVLNFSIAYGKTATGFAKDWQCEVKEAQKTIDAWFAQRKEVEQWQYNVRMIAKNQFFT 742

Query: 1007 HTLLGRARRFPA-IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
             TLLGR R      +  TRS  NH  RAAINTP+QG AAD+ + AM++I KN  LK+LG+
Sbjct: 743  QTLLGRYRYLEKYFQQQTRSYINHGLRAAINTPIQGGAADIVIAAMVKIYKNQSLKDLGY 802

Query: 1066 KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            KLLLQVHDE+ILEGP E+A+ A  IV E M  PF  +  L + L VDAK   NWY  K
Sbjct: 803  KLLLQVHDELILEGPEENAQEALKIVKELMENPFEIQ--LELPLEVDAKIGNNWYECK 858


>gi|145490164|ref|XP_001431083.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398185|emb|CAK63685.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score =  583 bits (1502), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 344/838 (41%), Positives = 477/838 (56%), Gaps = 89/838 (10%)

Query: 345  VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEAD 404
            V +V N++ AK+V+ +L NKYK   HA DTE   IDVK ETP++ G +IC S ++GPE +
Sbjct: 51   VTIVRNINDAKRVIDIL-NKYKKQPHAWDTETIDIDVKSETPINRGRLICASAFAGPEVN 109

Query: 405  FGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHAD 464
            FGNG   +++D       DL+  F  +FED  I K+WHNY FD H+  N G+ V GF  D
Sbjct: 110  FGNGPR-LFIDNF-AQNSDLIMLFKDYFEDEKILKIWHNYGFDKHIFGNNGINVRGFFGD 167

Query: 465  TMHMARLWDSSRRTEGGYSLE--ALTGDRKVMSEDKKAYQKDMSKGN-TDE-----GFMG 516
            TMHMARL D S++ +  YSL   +L  + ++     K  +  ++K N TDE        G
Sbjct: 168  TMHMARLLDPSKQPQE-YSLAKLSLAYEEEIKLVKTKRMECLLAKPNLTDEERSSLQLFG 226

Query: 517  --------KISMKDIFGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINT 566
                    K SMK IFG+ K  K+G   K+     + ++    + +  W+ YS  DS  T
Sbjct: 227  DHLLDINLKTSMKQIFGQNKELKNGQVSKLKVYPKILQMHCLPQYINQWVEYSTLDSEIT 286

Query: 567  LKLYKSLKKKLLEMSWKLDGKPVPG-----------KSMFDFYQEYWQPFGEILVKMETE 615
              L  +LK  L +     + KP               S+ D Y +YW   GEIL ++E E
Sbjct: 287  YFLCLTLKDLLNKTKIFYNLKPTDSDYKTKQNEFGINSLGDIYSKYWNSLGEILTELERE 346

Query: 616  GMLVDREYLSEIEKVARAEQEAAVNRFRKWA-SKHCPDAKYMNVGSDTQLRQLLF----- 669
            GM VD +++  I+  A  + +     F KW  +    D    N  S  QL+QL F     
Sbjct: 347  GMQVDMDHVKNIKVKAEEDMKQYEQNFIKWVQTTQEGDVSQFNCSSTQQLQQLFFAPCKK 406

Query: 670  ----------------------GGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKF 707
                                  G K + + + E LP  + F++ N   ++ E ++TP K+
Sbjct: 407  QQVKKTPQTMKEEEEEDEYLSDGRKKSVRKEVEDLPEVKGFQIDNINQIVKENQRTPLKY 466

Query: 708  RNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETE 767
              + ++ +G++ P   YT +G P    +ALK LA                   G  E+ +
Sbjct: 467  TEMLIKGLGIE-PLS-YTPSGMPQADYNALKQLA-------------------GDVEKQQ 505

Query: 768  YKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS 827
            Y G +  +       Q+  +AC AI+ L E+ SI+ L+  FI+PL    ++  +GR+H S
Sbjct: 506  Y-GLIYHHFAGKGEPQKGIDACVAINDLLELKSIEVLLHTFIIPL--IELTDPSGRIHTS 562

Query: 828  LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            +NINTETGRLS+R PNL NQPALEKDRYKIR++FIA  GN LIVADYGQLELR+LAH+  
Sbjct: 563  ININTETGRLSSRNPNLLNQPALEKDRYKIRKSFIAKKGNKLIVADYGQLELRVLAHMTK 622

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKDAFASERR 946
            CK+M+DAF  GGDFHSRT + M+PHI+  ++ G++L+EW   + K P PL+KD +A+ERR
Sbjct: 623  CKAMIDAFLKGGDFHSRTVITMFPHIQEEIDKGELLIEWDKSKGKAPAPLVKDKYAAERR 682

Query: 947  KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006
            KAK+LNFSIAYGKT  G A+DW+  V+EA+KT+D W+ +R+EV  WQ   +  ++     
Sbjct: 683  KAKVLNFSIAYGKTATGFAKDWQCEVKEAQKTIDAWFAQRKEVEQWQYNVRMIAKNQFFT 742

Query: 1007 HTLLGRARRFPA-IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
             TLLGR R      +  TRS  NH  RAAINTP+QG AAD+ + AM++I KN  LK+LG+
Sbjct: 743  QTLLGRYRYLEKYFQQQTRSYINHGLRAAINTPIQGGAADIVIAAMVKIYKNQSLKDLGY 802

Query: 1066 KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            KLLLQVHDE+ILEGP E+A+ A  IV E M  PF  +  L + L VDAK   NWY  K
Sbjct: 803  KLLLQVHDELILEGPEENAQEALKIVKELMENPFEIQ--LELPLEVDAKIGNNWYECK 858


>gi|428172321|gb|EKX41231.1| hypothetical protein GUITHDRAFT_74910, partial [Guillardia theta
            CCMP2712]
          Length = 664

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 309/711 (43%), Positives = 419/711 (58%), Gaps = 74/711 (10%)

Query: 439  KVWHNYSFDNHVLENYGLKVSGFHA-DTMHMARLWDSSRRTEGGYSLEALTGDRKVMSED 497
            +++HN+SFD H+L N+G+++ G  + DT+HMARLWD+SR+  GGY L +L  D       
Sbjct: 2    QIFHNWSFDGHLLANHGIEILGHRSGDTVHMARLWDTSRQGRGGYKLSSLMQDL------ 55

Query: 498  KKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREER----E 553
                   +  G TD        MK++FGR KLKKDG+ GK+  +     LQ +      E
Sbjct: 56   -------LGWGKTD--------MKEVFGRFKLKKDGTPGKVVYLPDSLTLQTDPNVTMFE 100

Query: 554  LWISYSAFDSINTLKLYKSLKKKLLEMSWKLDG--------KPVPGKSMFDFYQEYWQPF 605
             WI YS +D+I T  LY SL+K+L  MSW  D         K    +++F FY  +W+PF
Sbjct: 101  KWIHYSTYDTICTWYLYFSLRKELENMSWSPDAIVYENELLKMRADRTLFTFYDCFWRPF 160

Query: 606  GEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLR 665
            G+IL  ME +GM +D++YL +  + A+ ++E     F +W    CPD KY+N+ S+ Q R
Sbjct: 161  GQILTDMERKGMYIDKDYLYQQAEKAQEDKEKRTESFMQWVRSLCPDGKYININSNPQKR 220

Query: 666  QLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKT------------PSKFRNITLR 713
             LLF       D     P  R F+V N      E ++             P   R+I+L 
Sbjct: 221  HLLFSSITEPDDAGSREPHMRTFQVDNKVEEEEEREEEEGEEGEVLFLSPPRSKRSISL- 279

Query: 714  SIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVA 773
             +G+ L    YTATG  S  G  ++ LA    A       A    D G  E         
Sbjct: 280  -LGLALTPVAYTATGQASTAGQVIQKLAGKPFASPPSYGTA--FKDLGGGE--------- 327

Query: 774  SNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTE 833
                      E + AC+A+++L E  +I+ L+S F+LPL     + +  R+H SLNINTE
Sbjct: 328  ----------EGKAACEALASLLEGEAIEKLLSTFLLPL--PEQTDEASRIHTSLNINTE 375

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS++RPNLQNQPALEKD Y++R+AF A PG  LI+ DYGQLELRI+A +  C+SMLD
Sbjct: 376  TGRLSSQRPNLQNQPALEKDVYRMRKAFSAPPGRKLIIVDYGQLELRIMAQMTGCRSMLD 435

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED-KPPVPLLKDAFASERRKAKMLN 952
            AF+ GGDFHSRTA++MY +I  AVE  +VLLEW+  D  PP P+LKD FASERRKAK LN
Sbjct: 436  AFEQGGDFHSRTAIDMYRYIAEAVERKEVLLEWNSHDGAPPAPMLKDKFASERRKAKTLN 495

Query: 953  FSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGR 1012
            F IAYG T + +ARDW VS+EEA++T+  WY+ R+EV  WQE   + +R   +  T LGR
Sbjct: 496  FGIAYGMTKMKVARDWGVSLEEAEETIQTWYSARKEVKQWQEEVIERARRTGYTETFLGR 555

Query: 1013 ARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVH 1072
             R  P I       R H ERAAINTP+QG AAD+ M AML++    R++ LGW++++Q+H
Sbjct: 556  RRYLPEINGRDGVGRGHAERAAINTPIQGGAADIVMMAMLKLRGEERIRRLGWRMVMQIH 615

Query: 1073 DEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            DE+ILEGP E+AE    +V  CM +PF+  + L V+L VD   A NWY  K
Sbjct: 616  DEIILEGPEETAEEVFPLVRACMEQPFD--SPLSVELPVDGSIADNWYEGK 664


>gi|300176838|emb|CBK25407.2| unnamed protein product [Blastocystis hominis]
          Length = 627

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 306/676 (45%), Positives = 409/676 (60%), Gaps = 67/676 (9%)

Query: 466  MHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFG 525
            MHMARLW+SSR  +G YSLE+L+                      +E ++ K   K+IFG
Sbjct: 1    MHMARLWESSRVGKGSYSLESLS----------------------EELYIRKRPYKEIFG 38

Query: 526  RRKLKKDGSAGKISTIAPV----------EELQR--EERELWISYSAFDSINTLKLYKSL 573
            +  +K+DG  GK   + PV          ++LQR    R  WI YSAFD+  T  + K L
Sbjct: 39   KPHIKRDGMQGKTIDVPPVIVAFSLSPHPQDLQRGSATRSAWIDYSAFDAEATWHVRKEL 98

Query: 574  KKKLLEMSW---KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVD-REYLSEIEK 629
            +  L EM W    L+G  +   SM+DFY+ Y++ FG++LV ME  G+ VD   +L EIE+
Sbjct: 99   ESLLREMFWTSESLNGA-LSELSMWDFYRRYYRDFGQLLVNMERRGIHVDVARHLPEIER 157

Query: 630  VARAEQEAAVNRFRKWA-SKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIF 688
             ARA  E A N+F+ WA ++   D  +MNV S  Q++QLLF   P  +     LP ER F
Sbjct: 158  EARAALEKARNQFKSWAVAEGGSDLLFMNVHSTAQIQQLLFA--PGFRGGRAGLPREREF 215

Query: 689  KVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEY 748
             V NT G +  GKK P K R I +R +G+  P   +T  G P      ++ LA  I    
Sbjct: 216  SVENTTGFVEPGKKKPLKNRTILIRGLGI--PPISFTEKGLPQCNAATIQELAGKI---- 269

Query: 749  DCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNF 808
                      D    E++E+  A  +           + AC A++AL  V SI+++++ F
Sbjct: 270  ----------DEENVEKSEFGKAFEA----LGGGDRGKAACLALNALSRVNSIETMLNTF 315

Query: 809  ILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            ILPLQ  +V+    RVHCSLN+NTETGRLS+R PNLQNQPALEKD Y IR+AF+A PGN 
Sbjct: 316  ILPLQ--SVADAEQRVHCSLNLNTETGRLSSRNPNLQNQPALEKDVYFIRKAFMAKPGNI 373

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-H 927
            L+V+DYGQLELR+LAH+  CK+M++AF+ GGDFHSRTA++MY +I+  +  G  LLEW  
Sbjct: 374  LLVSDYGQLELRVLAHMTKCKAMIEAFRLGGDFHSRTALSMYDYIKEDIAKGTCLLEWDS 433

Query: 928  GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
             + +PP PLLK  +ASERR+AK+LNFS+AYGKT  GL +D+ VS+EEAK+ +  WY ER 
Sbjct: 434  SKGEPPAPLLKHKYASERRQAKILNFSLAYGKTAHGLQKDFGVSLEEAKEVLAKWYKERP 493

Query: 988  EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
            EV  WQE   + ++      TL+GR R  P I S  + +  H  RAAINTP+QG AAD+ 
Sbjct: 494  EVKRWQELTIQTAKETGFTRTLMGRYRPLPDINSKNKWKEGHACRAAINTPIQGGAADIV 553

Query: 1048 MCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRV 1107
            M AML+I K+ RL+ LG+++LLQ+HDEVILEGP E+   AK  +VE M  PF     L V
Sbjct: 554  MMAMLKIEKDERLRRLGFEMLLQIHDEVILEGPIENVAEAKKCLVEDMMHPF--ARPLLV 611

Query: 1108 DLSVDAKCAQNWYSAK 1123
            DL VD   A +WY AK
Sbjct: 612  DLVVDCNAAPSWYEAK 627


>gi|115475033|ref|NP_001061113.1| Os08g0175600 [Oryza sativa Japonica Group]
 gi|113623082|dbj|BAF23027.1| Os08g0175600, partial [Oryza sativa Japonica Group]
          Length = 570

 Score =  477 bits (1228), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/353 (65%), Positives = 278/353 (78%), Gaps = 23/353 (6%)

Query: 322 ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
           ++E++N+ KL      LA+ Y  V+VVDNV +A+ VV +LT KYK  +HACDTEVA IDV
Sbjct: 237 STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 290

Query: 382 KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
           K+ETPV HGEVICFSIYSG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSIK
Sbjct: 291 KEETPVGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIK 349

Query: 439 KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
           KVWHNYSFD+HV+EN G+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D ++M+   
Sbjct: 350 KVWHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRADGGYSLEGLTNDHRIMN--- 406

Query: 499 KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
            A  KD+ K        GK+SMK IFGR+ ++K+GS GK  +I PV++LQRE+RELWI Y
Sbjct: 407 -AVLKDIHK-------TGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDRELWICY 458

Query: 559 SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
           S+ DS++TLKLY+SLK KL    W  DG   P  +M+DFY+EYW+PFG +LVKMETEGM 
Sbjct: 459 SSLDSMSTLKLYESLKNKLEAKEWIFDG--CPRGTMYDFYEEYWRPFGALLVKMETEGMF 516

Query: 619 VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGG 671
           VDR YLSEIEK A  E++ A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG
Sbjct: 517 VDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGG 569


>gi|168037310|ref|XP_001771147.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677527|gb|EDQ63996.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1042

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/421 (54%), Positives = 302/421 (71%), Gaps = 17/421 (4%)

Query: 342  YSN--VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
            +SN  VMVVD+V  A  VV  L +KYK +VHACDTEV +IDVK E+PV HG + CFSIY 
Sbjct: 604  FSNDLVMVVDSVEKASMVVEHLMSKYKDVVHACDTEVTEIDVKNESPVGHGRITCFSIYC 663

Query: 400  GPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVS 459
            GP ADFG+GK+ +W+D+LDGG  D+L  F  +FE PSIKKVWHNYSFD HVL  +G+   
Sbjct: 664  GPTADFGDGKNRLWIDVLDGG-EDVLKVFKRYFESPSIKKVWHNYSFDKHVLGRHGIHPQ 722

Query: 460  GFHADTMHMARLWDSSRR-TEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFM-GK 517
            GFHADT+H+ARL+DS+RR  +GGYSLE L+ D KVM      Y +  ++   DE  + GK
Sbjct: 723  GFHADTIHLARLYDSARRGAKGGYSLEVLSADEKVMD----GYIRHSTE--VDESVLAGK 776

Query: 518  ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREE--RELWISYSAFDSINTLKLYKSLKK 575
             SMK++FG+  LKKDG+ GKI TI PV ELQR+E  R+ WI YS FD++ T +L+ SL++
Sbjct: 777  KSMKELFGKANLKKDGTPGKIKTIPPVHELQRDEELRDAWIYYSTFDAVCTWRLFLSLQQ 836

Query: 576  KLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQ 635
            KL    W +      G SM+DFY++YW+PFGE+LV+ME +GMLVD  +L+ +EKVA+A+Q
Sbjct: 837  KLSSTPWNVADLKKKG-SMYDFYEKYWRPFGEVLVQMEADGMLVDCNHLATVEKVAKAQQ 895

Query: 636  EAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEG 695
            E +V+RFRKWA+K+C DA  MNVGSD Q+RQ L+GG  N KD  + LP+ER+F VPNT+G
Sbjct: 896  EISVSRFRKWAAKYCADAAQMNVGSDAQIRQFLYGGTANRKDKDQVLPMERVFSVPNTDG 955

Query: 696  VIAEGKKTPSKFRNIT---LRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVD 752
             I EGKK   K + I    L + G+ LP E YT++GWP+VGG A+K LA  ++ +Y  ++
Sbjct: 956  FIEEGKKVAKKTKPIVISGLANFGIKLPVETYTSSGWPAVGGAAIKVLAGKVAIDYSALE 1015

Query: 753  G 753
             
Sbjct: 1016 A 1016


>gi|340500466|gb|EGR27340.1| hypothetical protein IMG5_197550 [Ichthyophthirius multifiliis]
          Length = 876

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 263/659 (39%), Positives = 372/659 (56%), Gaps = 82/659 (12%)

Query: 517  KISMKDIFGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINTLKLYKSLK 574
            K +MK +F ++K  KDG  GK      V  +  +   +  W++YSA D+  T  LY+ L 
Sbjct: 248  KTNMKQLFAKKKYLKDGREGKTLEFPTVIRMHSDTELINNWVNYSALDAEVTFFLYQVLM 307

Query: 575  KKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAE 634
             KL E+    +      K+M D Y +YW PFGE+L  +E +G  ++ ++L  I+  A  +
Sbjct: 308  TKLQELETNFENM----KNMKDLYHKYWLPFGELLTDLERKGFEINIQHLENIQVKANED 363

Query: 635  QEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGG---KPNSK--------------- 676
                  +F  W +   P  +  N  S  QL+ L F      P +K               
Sbjct: 364  IINYQKQFLDWVTHIQPQLEQFNPSSVQQLQHLFFAPFKRVPQAKAKGKKSLSILTEKEQ 423

Query: 677  --------DDSES---------------------LPIERIFKVPNTEGVIAEGKKTPSKF 707
                    DD E                      +P ++IFKV N + V+  GKK P K 
Sbjct: 424  NDINTIYEDDKEGEDNSGYHSDGRKKAVRQIIDEIPQKKIFKVLNIKNVLEIGKKRPLKH 483

Query: 708  RNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETE 767
             ++ +  +G+   +  YT TG P+V    LK LA                   G  E  +
Sbjct: 484  TDMEIEGLGLQAIS--YTETGMPAVDLPVLKILA-------------------GNPENGD 522

Query: 768  YKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS 827
            + G +    +    E+ A++A  +I AL ++   ++L+  FI+PL+ +  + KN R+HCS
Sbjct: 523  F-GKIGEFYRKQGQEELAQKASKSIQALIQLKQTETLLQTFIIPLRET--ADKNNRIHCS 579

Query: 828  LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            LNINTETGR+SAR+PNL NQPAL+KD YKIR AF A  GN LIVADYGQLELRILAH+  
Sbjct: 580  LNINTETGRISARKPNLLNQPALDKDVYKIRSAFQASKGNKLIVADYGQLELRILAHMTK 639

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKDAFASERR 946
            CK+MLDAF  GGDFHSRTAM MYP I+  +E G++LLEW   +  PP PLLKD ++SER+
Sbjct: 640  CKAMLDAFHKGGDFHSRTAMTMYPEIKKEIEEGKLLLEWDKNKGSPPAPLLKDKYSSERK 699

Query: 947  KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006
            KAKM+NFSIAYGK+  G ++DW  S++EA++T++ W++ERQEV TWQ   K  +      
Sbjct: 700  KAKMMNFSIAYGKSAHGFSKDWGCSLQEAQETLEKWFSERQEVKTWQTKTKNIALEKGCS 759

Query: 1007 HTLLGRARRFPAIKSLTR--SQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELG 1064
             TL+GR R    + +     S  +H  RAAINTP+QG AAD+ + AM++I +N  +KELG
Sbjct: 760  QTLMGRYRNLAKLLNSKSPDSIASHGLRAAINTPIQGGAADLVIAAMVKIQQNQEIKELG 819

Query: 1065 WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            ++L+LQ+HDE+ILEGP+E+AE A  +V++ M  P +    L + + VDAK   NWY  K
Sbjct: 820  YELVLQIHDELILEGPAENAEEALKLVIKIMENPLDMP--LLLKMEVDAKIGDNWYQCK 876



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/128 (45%), Positives = 77/128 (60%), Gaps = 3/128 (2%)

Query: 361 LTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGG 420
           L    K  VHA DTE   ID+K E+ V +G++IC S Y G + DFGNG   +++D     
Sbjct: 31  LLQSLKDRVHAWDTETIDIDLKTESAVGNGKIICASAYCGLDVDFGNGPR-LFIDNF-AQ 88

Query: 421 GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEG 480
             +L+N F  + ED   KKVWHNY FD H+  N+G+ V GF  DTMHM RL D SR  + 
Sbjct: 89  NTNLINIFKEYLEDEKYKKVWHNYGFDRHIFYNHGINVKGFGGDTMHMTRLIDPSRGPK- 147

Query: 481 GYSLEALT 488
            YSL +++
Sbjct: 148 EYSLSSIS 155


>gi|387192342|gb|AFJ68650.1| DNA polymerase I [Nannochloropsis gaditana CCMP526]
          Length = 470

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/428 (53%), Positives = 285/428 (66%), Gaps = 30/428 (7%)

Query: 699  EGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLD 758
            E +K   K+ N+T+  +G  L  E +TA G P+V    L+ LA N S             
Sbjct: 70   ETQKKARKYINLTIHGLG--LTPETFTAAGAPAVSAAVLRKLAGNPS------------- 114

Query: 759  DSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVS 818
                      +G   S  K F   +E  EAC A+ ALC + SID+++SNF+LPLQ  +++
Sbjct: 115  ----------EGVWGSAYKHFNEGKEGEEACVALDALCAMGSIDTMLSNFLLPLQ--DLA 162

Query: 819  GKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
              + RVHCSLN+NTETGRLSARRPNLQNQPALEKD+YKIR+AF++ P  SLIVADYGQLE
Sbjct: 163  DDDSRVHCSLNLNTETGRLSARRPNLQNQPALEKDQYKIRKAFVSEPNQSLIVADYGQLE 222

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLL 937
            LR+LAH+  C+SM+ AFK GG FHSRTA+ M+ H+R AVE+G+VLLEW + + KPP PLL
Sbjct: 223  LRLLAHITKCQSMIQAFKEGGCFHSRTAVGMFEHVRKAVESGEVLLEWDYAKGKPPAPLL 282

Query: 938  KDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARK 997
            KD F SERRKAK LNFSIAYGKT  GL++DW VS +EA+  ++ WY +R EV  WQE   
Sbjct: 283  KDKFGSERRKAKTLNFSIAYGKTAFGLSKDWGVSTKEAEAMLEAWYADRPEVKEWQEKAI 342

Query: 998  KESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKN 1057
             E+   +   TL+GR R+ P I S T   + H ERAAINTP+QG AADV M AML I  +
Sbjct: 343  AEAHRTSRTKTLMGRYRKLPEINSRTLRFQRHAERAAINTPIQGGAADVVMMAMLRIHNS 402

Query: 1058 ARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGK--NNLRVDLSVDAKC 1115
              L  LGWKLLLQ+HDEVI+EGP ES E A A V  CM  P +G     L V L VDAK 
Sbjct: 403  QVLARLGWKLLLQIHDEVIVEGPDESREEALAEVKRCMEHPGDGYGLGELLVKLEVDAKI 462

Query: 1116 AQNWYSAK 1123
            A++WY AK
Sbjct: 463  AKSWYEAK 470


>gi|118362992|ref|XP_001014571.1| DNA polymerase I family protein [Tetrahymena thermophila]
 gi|89296488|gb|EAR94476.1| DNA polymerase I family protein [Tetrahymena thermophila SB210]
          Length = 988

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/473 (43%), Positives = 305/473 (64%), Gaps = 44/473 (9%)

Query: 670  GGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGW 729
            G K + + + + +P  + FKV N +G+I EGKK P K  ++ +  +G+++ +   T +G 
Sbjct: 541  GRKKSVRKEEDDIPQTKAFKVLNIKGIIPEGKKKPPKQLDMNITGLGLEVIS--LTDSGM 598

Query: 730  PSVGGDALKTLARNIS-AEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFAT------- 781
            P+     LK LA N     Y  +                  G +  NN++ A        
Sbjct: 599  PAADLPVLKILAGNPKKGNYGAI------------------GKLLKNNQLAAKVYNQIGE 640

Query: 782  -------EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTET 834
                   E+  + A  AI +L ++  +++L++ FI+PL+   ++ K+GR+HCSLN+NTET
Sbjct: 641  YYKQKGDEEMGKRASHAIESLIQLKQVETLLTTFIIPLR--ELADKDGRIHCSLNMNTET 698

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GR+SAR+PNL NQP+ +KD YKIR AF A  GN LIVADYGQLELRILAH+ NCK+M++A
Sbjct: 699  GRISARKPNLMNQPSHDKDVYKIRSAFQAGKGNKLIVADYGQLELRILAHMTNCKAMIEA 758

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKDAFASERRKAKMLNF 953
            FK GGDFHSRTAM MYP ++  +E G++LLEW   + +PP PLLKD ++SER+KAKM+NF
Sbjct: 759  FKMGGDFHSRTAMGMYPKLKEEIEKGELLLEWDKSQGEPPAPLLKDKYSSERKKAKMMNF 818

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
            SIAYGK+  G ++DW  S++EA++ +D W+ +R+EV  WQE  KK +    +  T++GR 
Sbjct: 819  SIAYGKSAHGFSKDWNCSMKEAQEALDAWFADRKEVKEWQENTKKIALEHGYTQTMMGRY 878

Query: 1014 RRFPAIKSLTRSQRNHIE---RAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQ 1070
            R    + + ++S R+ ++   RA+INTP+QG AAD+ + AM+++S++ +L ELG+KLLLQ
Sbjct: 879  RNLERL-THSKSARHLVQHGLRASINTPIQGGAADLVIAAMVKVSQDPKLNELGYKLLLQ 937

Query: 1071 VHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +HDE+ILEGP E A+ A A V+E M  P +    L + + VDAK   NWY  K
Sbjct: 938  IHDELILEGPEEHAQEALARVIEIMENPLD--TPLLLKMEVDAKVGNNWYECK 988



 Score =  113 bits (283), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 97/191 (50%), Gaps = 16/191 (8%)

Query: 307 NPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYS---------NVMVVDNVSAAKKV 357
           NP N    G    K      +SE L     K  +FY+            +V N   A KV
Sbjct: 26  NPSNSQVLGDYVIKSKMSGHSSENL---YEKYKNFYNVQIEKINIPGTTIVKNRDQAHKV 82

Query: 358 VWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL 417
           V +L +   +  HA DTE   +D K E+P+  G++IC S + G + DFGNG   +++D  
Sbjct: 83  VKILKS-LPNREHAWDTETIDVDAKLESPIGKGKIICASAFCGIDVDFGNGPR-LFIDNF 140

Query: 418 DGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
                DL+  F  + ED   KK+WHNY FD H+  N+G+ V GF  DTMH+ARL D SR 
Sbjct: 141 -AQNTDLIQIFKEYLEDSRYKKIWHNYGFDRHIFYNHGINVQGFGGDTMHLARLADPSRG 199

Query: 478 TEGGYSLEALT 488
            +  YSL  +T
Sbjct: 200 PK-EYSLANVT 209



 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 6/156 (3%)

Query: 517 KISMKDIFGRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINTLKLYKSLK 574
           K +MK +FG++K  KDG  GK         +    E  E W+ YS  D+  T  +++ LK
Sbjct: 301 KTNMKQLFGKKKYLKDGKEGKTIEFPNTIRMHTDPELLEKWVHYSCLDAEITFFVFQVLK 360

Query: 575 KKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAE 634
            +L  +S   +      K+M D Y +YW+PFGEIL  +E  G  ++ E+L +I   A  +
Sbjct: 361 DELKSLSTNFEDM----KNMLDLYNKYWKPFGEILTDLERRGFELNLEHLDKIRVQAEND 416

Query: 635 QEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
                 +F  W        +  N  S  QL+QL F 
Sbjct: 417 MIKLEKQFLDWVCSTQQGLEQFNYSSAQQLQQLFFA 452


>gi|299116518|emb|CBN74706.1| pol1-like DNA polymerase [Ectocarpus siliculosus]
          Length = 1473

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/422 (53%), Positives = 289/422 (68%), Gaps = 28/422 (6%)

Query: 705  SKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTE 764
            +K+R +T+ S+ +  PT++ TA G P+V  D L  LA N                    E
Sbjct: 1077 TKYRELTISSVNMK-PTKV-TAAGSPAVSMDVLNHLAGNPH------------------E 1116

Query: 765  ETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRV 824
            +    GA   +   F    E +EAC+A+ ALC + S+D+++SNF+ PLQ   +  +  RV
Sbjct: 1117 DPPKYGAAYGH---FGGGLEGKEACEALYALCNMGSVDTMVSNFLQPLQ--ELVDEKSRV 1171

Query: 825  HCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAH 884
            HCSLN+NTETGRLSAR+PNLQNQPALEKD+YKIR AF A  GN+L+VADYGQLELR+LAH
Sbjct: 1172 HCSLNLNTETGRLSARKPNLQNQPALEKDQYKIRAAFRAEEGNTLVVADYGQLELRLLAH 1231

Query: 885  LANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKDAFAS 943
            + +CKSM+ AFK GG FHSRTA+ M+ H++ AV+ G+VLLEW + + +PP PL+KD FAS
Sbjct: 1232 ITDCKSMITAFKEGGCFHSRTAVGMFDHVKEAVDKGEVLLEWDYSKGEPPKPLVKDVFAS 1291

Query: 944  ERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRID 1003
            ERR+AK LNFSIAYGKT  GL +DW V+++EA+  V  WY +R EV  WQ+   + ++  
Sbjct: 1292 ERRQAKTLNFSIAYGKTGHGLFKDWGVTLKEAEDLVKAWYADRPEVKRWQKQVIQNAKDT 1351

Query: 1004 NHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKEL 1063
                TL+GR R+ P I S  R +  H  RAAINTP+QG AADVAM AM+ I ++  LK+L
Sbjct: 1352 GFSRTLMGRYRKLPDITSNDRGKVGHGTRAAINTPIQGGAADVAMVAMIGIVRSPLLKKL 1411

Query: 1064 GWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN--NLRVDLSVDAKCAQNWYS 1121
            GWKLLLQVHDEVILEGP ESA+ A A  V CM +P++G     LRVDL VDAK A+ WY 
Sbjct: 1412 GWKLLLQVHDEVILEGPEESAKEALAETVRCMQQPWDGIGLRELRVDLLVDAKSAKTWYD 1471

Query: 1122 AK 1123
            AK
Sbjct: 1472 AK 1473



 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 150/361 (41%), Positives = 204/361 (56%), Gaps = 42/361 (11%)

Query: 344 NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
            V +V     A+KVV +L +      +ACDTEV++I++K   PV HG V C SIY GP+ 
Sbjct: 624 GVQIVAGREKARKVVKILMDN-PDAFYACDTEVSEINLKDHGPVGHGRVTCISIYGGPDL 682

Query: 404 DFGNGKSCI-WVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL-------ENYG 455
           DFG G   I WVD L G     L EF PFF     KKVWHNY FD HV+       E   
Sbjct: 683 DFGEGPGKILWVDNL-GAAAGTLEEFLPFFASEKHKKVWHNYGFDRHVMFNSPDNREEQR 741

Query: 456 LKVSGFHADTMHMARLWDSSRRT---EGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDE 512
           +   GF  DTMHMARLWD+S      + G+SLEAL+   K++ E ++             
Sbjct: 742 IDCVGFAGDTMHMARLWDTSMEKYAGDTGFSLEALS--LKLLGEGQR------------- 786

Query: 513 GFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINTLKLY 570
               K  MK++FG  KLKKDG+ G +  + P++E+Q   E R  +I YSA+D+  T  ++
Sbjct: 787 ----KTPMKELFGIPKLKKDGTPGNLLVLPPIDEIQTRPEVRPRFIEYSAYDAQATWLVH 842

Query: 571 KSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVD-REYLSEIEK 629
           + L +KL EMSWK       G +M DFY+ Y+ PFGE+L  ME  G+ V+ ++YL +IE 
Sbjct: 843 RELMQKLREMSWK------DGMTMLDFYEMYYVPFGELLTDMERTGIYVEAKDYLQDIEV 896

Query: 630 VARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFK 689
            AR +++ A   F  W  K  P A+ +N  S TQ++ LLFGG  N K   E LP+ R+FK
Sbjct: 897 QARNDKKKAEETFLNWVKKIQPGAETLNPSSSTQIQTLLFGGATNPK-TKEKLPVRRVFK 955

Query: 690 V 690
           +
Sbjct: 956 I 956


>gi|294887455|ref|XP_002772118.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
 gi|239876056|gb|EER03934.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
          Length = 940

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 268/823 (32%), Positives = 414/823 (50%), Gaps = 101/823 (12%)

Query: 371  ACDTEVAKIDVKQETPV-DHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFA 429
            A DTE   +++ + TP    GE++C + + G + DFG+G   ++VD   G  R +L+ F 
Sbjct: 148  AWDTEFWNVELTRNTPAHSSGELLCLTAFGGGKLDFGSG-PLLFVDC-KGPSRHVLDLFR 205

Query: 430  PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSS-------------- 475
             +FE+P+ +K++HN++ D HVL  +G+ V G  ADT ++ARL+DSS              
Sbjct: 206  SYFENPAKRKIFHNFAADAHVLYGHGITVRGLEADTRYLARLFDSSLSSWEDQVQPEKPP 265

Query: 476  ---RRTEGGYSLEALT---GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKL 529
               R+++   + EAL    GD  + S      ++    G   +G+  K  +  +FG    
Sbjct: 266  LLLRKSKTSTTKEALIDEGGD--IFSTPLNDCEQHSGPG---KGYQLK-RLVSLFGIAPK 319

Query: 530  K----KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW--K 583
            +    K+  AG++           E+   W+ Y+A D+  T  LY+ L   L    W  +
Sbjct: 320  EPPSFKEKFAGRLGIGGLEAHCSEEKFGEWLKYAADDAYFTFMLYRRLTDTLRGQEWCTE 379

Query: 584  LDGKPV--------------------PGKSMFDFYQEYWQPFGEILVKMETEGMLVDREY 623
            L  +P+                     G SM DF  ++++PF E+LV++E  G   +REY
Sbjct: 380  LHWQPIREKIRHGTTTFNGMNDPETYTGLSMSDFAVKFYRPFTELLVEIERRGFGANREY 439

Query: 624  LSEIEKVARAEQEAAVNRFRKWASKH--------CPDAKYMNVGSDTQLRQLLFGGKPNS 675
            L +    A+A+ +   + FR  A            P A+++N  S  Q+RQLLFG  P+ 
Sbjct: 440  LIQQLTAAQADLQRHKDAFRTIAQSLKDRRGQPLNPQAEFINPRSAKQIRQLLFG-NPDE 498

Query: 676  KDDSESLPIERIFKVPNTEGV--IAEGKKTPSKFRNITLRSIGVDLPTEMY--------T 725
             D    +   R+      E +    E    PS      ++ +G+     +Y         
Sbjct: 499  PDHLRWV-ARRVRAGEEAEWIQPFMEFPTAPSSKHRFIVKGLGLQPIAYLYGRERLSNYA 557

Query: 726  ATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEA 785
             +GWP V    L+  A                   G   E  Y  A      +   E  A
Sbjct: 558  PSGWPKVESAILRAFA-------------------GEPHEGNYGVAYQQLEPVRGHEHAA 598

Query: 786  REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNG--RVHCSLNINTETGRLSARRPN 843
               C  +  L     I + I++ + PL       ++G  R+H SL ++T TGRL  R+PN
Sbjct: 599  -SVCRLLWHLQRSIRISAAITSVLSPLIERIKYDEDGFGRIHPSLALDTTTGRLCCRKPN 657

Query: 844  LQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHS 903
            LQN P+   D Y IR+AF A PGN+LIV DY QLELRILAH++ C+SM+     GGD HS
Sbjct: 658  LQNPPSAHNDLYSIRKAFSARPGNTLIVGDYSQLELRILAHMSRCESMIRQLNQGGDIHS 717

Query: 904  RTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVG 963
            + A++++P +  AV  G V+++   E  P +P +K  F+++R++AK++NFSIAYGKT   
Sbjct: 718  QCAVDLFPEVAEAVANGSVVID-DAEAHPGIPSVKTKFSTQRQQAKVMNFSIAYGKTERT 776

Query: 964  LARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLT 1023
            LA +  + V + +     W N ++ V  W+    +++R   H  ++LGR RRFP IK   
Sbjct: 777  LAEEMDLPVTDIRDMFTRWNNSKKGVERWKAEIIQQARDTQHATSVLGRHRRFPHIKHRL 836

Query: 1024 RSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSES 1083
            R      ERAA+N  +QGSAAD+AM AML + ++ RL+ +G+K+++QVHDEVILEGP+E+
Sbjct: 837  RKYSGRSERAAVNFVIQGSAADIAMMAMLRVDRDERLRRMGFKIVMQVHDEVILEGPAEN 896

Query: 1084 AEVAKAIVVECMSKPF-NGKNNLR--VDLSVDAKCAQNWYSAK 1123
            A  A  IV + M  PF + K + R  ++L VD     NW  AK
Sbjct: 897  ATDAVPIVRDLMEHPFADIKPDYRMLINLDVDIATGTNWSDAK 939


>gi|397615480|gb|EJK63460.1| hypothetical protein THAOC_15874 [Thalassiosira oceanica]
          Length = 676

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/421 (50%), Positives = 286/421 (67%), Gaps = 26/421 (6%)

Query: 706  KFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEE 765
            K+ ++T+ S+G+ +P + +T  G PS   D L+ LA +  A+      A++         
Sbjct: 279  KWVDVTITSLGM-VP-DKFTVGGAPSATADVLRGLAGDPFADPPKYGKAYEF-------- 328

Query: 766  TEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVH 825
             E K A + ++           AC A  +L  + SID++I+NF+  LQ + V  +N RVH
Sbjct: 329  FEAKKAGSGHD-----------ACVAFYSLTAIGSIDTMIANFLTSLQ-ALVDDRN-RVH 375

Query: 826  CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
             S+NINTETGRLS+R+PNLQNQPALEKD+YKIRQAFIA PGN LIVADYGQLELR+LA +
Sbjct: 376  NSININTETGRLSSRKPNLQNQPALEKDKYKIRQAFIASPGNRLIVADYGQLELRLLASM 435

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKDAFASE 944
             NC SM++AFKAGGDFHSRTA++M+ +I++AVE+G+V+LEW +   +P  P++KD +ASE
Sbjct: 436  TNCVSMIEAFKAGGDFHSRTALDMFKYIQDAVESGEVILEWDYANGEPTKPMVKDKYASE 495

Query: 945  RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDN 1004
            RR AK LNFSIAYGKT  GL++DW VS +EA+  +  WY+ R EV  WQ+  K  ++ + 
Sbjct: 496  RRNAKTLNFSIAYGKTAHGLSQDWGVSKKEAEGLLQAWYDSRPEVEKWQKTAKDTAKKEG 555

Query: 1005 HVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELG 1064
               TL+GR R  P  +  +  Q  H  RA+INTP+QG AADVAM AM++I+ + +LK LG
Sbjct: 556  TTRTLMGRYRHLPHARGGSMKQLGHALRASINTPIQGGAADVAMMAMIKINNSEKLKRLG 615

Query: 1065 WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFN-GKNNLRVDLSVDAKCAQ-NWYSA 1122
            W LL+QVHDEV+LEGP E+AE A   V+ECM +P+  G +  +V L VD  C   NWY A
Sbjct: 616  WILLMQVHDEVMLEGPEETAEEAFEEVLECMQEPWVLGLDKTKVPLLVDGSCEHDNWYDA 675

Query: 1123 K 1123
            K
Sbjct: 676  K 676



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 4/117 (3%)

Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC-PDAKYMNVGSD 661
           +PFGE+L  ME  G+L+  +YL+ +E  AR ++   V  FR+WA++   PD   MN+GS 
Sbjct: 2   RPFGELLTDMERRGILIATDYLAGVEVQARKDRVEHVETFRQWAAEQIGPDGLAMNLGSS 61

Query: 662 TQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVD 718
           TQL   LFGG  N K    S  ++R+F+    E  I +      + R+  LR    D
Sbjct: 62  TQLSTFLFGGAANPKTKEHS-EVQRVFRTKREE--IPDDAMEAYRERDAKLRETAPD 115


>gi|428166784|gb|EKX35753.1| hypothetical protein GUITHDRAFT_79451 [Guillardia theta CCMP2712]
          Length = 825

 Score =  323 bits (827), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 195/523 (37%), Positives = 278/523 (53%), Gaps = 60/523 (11%)

Query: 345 VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSG--PE 402
           V   ++  AA +V  ++  + + ++ ACDTE   +D   E+PV+ G   CFS+Y G    
Sbjct: 72  VRTEEDARAALEVTRLMQKRMEKIIFACDTETYGVDPTVESPVEKGSCACFSLYGGRYTT 131

Query: 403 ADFGNGKSC-IWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGF 461
           A  G GKS  +WV+ L   G  +L  F  +FED   KK++HN+SFD+H+L N+G+ V GF
Sbjct: 132 ARRGKGKSNRLWVNTLGEEGEKVLAVFKVWFEDERFKKIFHNWSFDSHILRNHGITVRGF 191

Query: 462 HADTMHMARLWDSSRRTEG-GYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISM 520
             DT+HMARLWD+SR + G GY L  L+                    N   G+ GK  M
Sbjct: 192 AGDTIHMARLWDASRLSTGKGYKLSVLS--------------------NELLGW-GKTEM 230

Query: 521 KDIFGRRKLKKDGSAGKISTIAPVEELQREER----ELWISYSAFDSINTLKLYKSLKKK 576
           K++F  RKLKKDG+ GK+  +     +Q ++       W+ YS +DS+ T  LY  L+K+
Sbjct: 231 KEVFSVRKLKKDGTPGKVLILRDSCSIQTDDDPKIFRKWVHYSTYDSLCTWYLYYKLRKE 290

Query: 577 LLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQE 636
           L EMSW     P     MF FY+ +W+PFGEIL  +E  G+ +DR+YL +    A  ++E
Sbjct: 291 LEEMSW----SPDLLLCMFQFYERFWKPFGEILTDIERTGIFIDRDYLRQQAAAAERDKE 346

Query: 637 AAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIE--RIFKVPNTE 694
             +  FR+W  K CPD  YMN  S+   + LLF  K       E    E  + F + NTE
Sbjct: 347 EKLAGFRRWVGKLCPDGIYMNTRSNLHKKHLLFSSKRGLAKAVEEAEEEHYKTFTIDNTE 406

Query: 695 GVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGA 754
           G + EG+  P   R I L+ +G  L    YT  G  S  G  + TLA    A        
Sbjct: 407 GFLEEGRSEPRATREIRLKGLG--LSPVSYTPAGQASTSGSVISTLAGKPFA-------- 456

Query: 755 HDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQG 814
                    +   Y  A     K        +E C+A+  L E  +++ L+S F++PL  
Sbjct: 457 ---------DPPRYGTAF----KDLGEGDFGKEVCEALGFLLESENVEKLLSTFLIPL-- 501

Query: 815 SNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKI 857
             ++ ++GR+H +LN+NTETGRLS++RPNLQNQPALEKD YK+
Sbjct: 502 PEMTDQHGRIHTALNLNTETGRLSSKRPNLQNQPALEKDVYKV 544



 Score =  152 bits (385), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 77/150 (51%), Positives = 99/150 (66%), Gaps = 2/150 (1%)

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
            VGLA+DW V+ +EA++T+  WYN R+EV  WQE  KK++R   +  TLLGR R    ++S
Sbjct: 651  VGLAKDWGVTQKEAQETIKAWYNARKEVQDWQEGVKKKARRVGYTETLLGRRRNLADMRS 710

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPS 1081
                 R H ERAAINTP+QG AADV + AML I +N  ++  GWK++LQ+HDEVILEGP 
Sbjct: 711  NNTVLRGHAERAAINTPIQGGAADVVVMAMLNIWRNEEIRARGWKMVLQIHDEVILEGPE 770

Query: 1082 ESAEVAKAIVVECMSKPFNGKNNLRVDLSV 1111
            + AE    IV +CM  PF     L VDL V
Sbjct: 771  DHAEEVFRIVKKCMENPF--PRPLLVDLPV 798


>gi|294892786|ref|XP_002774233.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
 gi|239879450|gb|EER06049.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
          Length = 842

 Score =  302 bits (774), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 242/821 (29%), Positives = 368/821 (44%), Gaps = 143/821 (17%)

Query: 371  ACDTEVAKIDVKQETPV-DHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFA 429
            A DTE   +++ + TP    GE++C + + G + DFG+G   ++VD   G  R +L+ F 
Sbjct: 96   AWDTEFWNVELTRNTPAHSSGELLCLTAFGGGKLDFGSG-PLLFVDC-KGPSRHVLDLFR 153

Query: 430  PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRT------EGGYS 483
             +FE+P+ +K++HN++ D HVL  +G+ V G  ADT ++ARL+DSS  +           
Sbjct: 154  SYFENPAKRKIFHNFAADAHVLYGHGITVRGLEADTRYLARLFDSSLSSWEDQVRVSNDL 213

Query: 484  LEALTGDRKVMSEDKKAYQ-KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
            L  L   RK     ++     D    N    F G++ +  +      +K G         
Sbjct: 214  LVCLASRRKNHRRQREVVGVSDGESENCLYRFAGRLGIGGLEAHCSEEKFGE-------- 265

Query: 543  PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW--KLDGKPV----------- 589
                        W+ Y+A D+  T  LY+ L   L    W  +L  +P+           
Sbjct: 266  ------------WLKYAADDAYFTFMLYRRLTDTLRGQEWCTELHWQPIREKIRHGTTTF 313

Query: 590  ---------PGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVN 640
                      G SM DF  ++++PF E+LV++E  G   +REYL +    A+A+ E    
Sbjct: 314  NGMNDPETYTGLSMSDFAVKFYRPFTELLVEIERRGFGANREYLIQQLTAAQADLERHKE 373

Query: 641  RFRKWASKH--------CPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPN 692
             FR  A            P A+++N  S  Q+RQLLFG  P+  D    +   R+     
Sbjct: 374  AFRMIAQSLKDRRGQPLNPQAEFINPRSAKQIRQLLFG-NPDEPDHLRWV-ARRVRAGEE 431

Query: 693  TEGV--IAEGKKTPSKFRNITLRSIGVDLPTEMY--------TATGWPSVGGDALKTLAR 742
             E +    E    PS      ++ +G+     +Y          +GWP V    L+  A 
Sbjct: 432  AEWIQPFMEFPTAPSSKHRFIVKGLGLQPIAYLYGRERLSNYAPSGWPKVESAILRAFA- 490

Query: 743  NISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSID 802
                              G   E  Y  A      +   E  A   C  +  L     I 
Sbjct: 491  ------------------GEPHEGNYGVAYQQLEPVRGHEHAA-SVCRLLWHLQRSIRIS 531

Query: 803  SLISNFILPLQGSNVSGKNG--RVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA 860
            + I++ + PL       ++G  R+H SL ++T TGRL  R+PNLQN P+   D Y IR+A
Sbjct: 532  AAITSVLSPLIERIKYDEDGFGRIHPSLALDTTTGRLCCRKPNLQNPPSAHNDLYSIRKA 591

Query: 861  FIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETG 920
            F A PGN+LIV DY QLELRILAH++ C+SM+     GGD HS+ A++++P +  AV  G
Sbjct: 592  FSARPGNTLIVGDYSQLELRILAHMSRCESMIRQLNQGGDIHSQCAVDLFPEVAEAVANG 651

Query: 921  ---------------QVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
                           QV+++   E  P +P +K  F+++R++AK++NFSIAYGKT   LA
Sbjct: 652  SVGRLHSRIDRRATVQVVID-DAEAHPGIPSVKTKFSTQRQQAKVMNFSIAYGKTERTLA 710

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
             +  + V + +     W N ++ V  W+      + I   V    G  R  P +    R 
Sbjct: 711  EEMDLPVTDIRDMFTRWNNSKKGVERWK------AEILREVRACSGEFRH-PRVGGRHRH 763

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAE 1085
              +   R+   T   G                        K+++QVHDEVILEGP+E+A 
Sbjct: 764  DGHASRRSRRETTAHGV-----------------------KIVMQVHDEVILEGPAENAT 800

Query: 1086 VAKAIVVECMSKPF-NGKNNLR--VDLSVDAKCAQNWYSAK 1123
             A  IV + M  PF + K + R  ++L VD     NW  AK
Sbjct: 801  DAVPIVRDLMEHPFADIKPDYRMLINLDVDIATGTNWSDAK 841


>gi|341609973|gb|AEK81399.1| RxL467 [Phytophthora sojae]
 gi|341609975|gb|AEK81400.1| RxL467 [Phytophthora sojae]
 gi|341609977|gb|AEK81401.1| RxL467 [Phytophthora sojae]
 gi|348687651|gb|EGZ27465.1| hypothetical protein PHYSODRAFT_284102 [Phytophthora sojae]
          Length = 471

 Score =  300 bits (768), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 176/421 (41%), Positives = 241/421 (57%), Gaps = 46/421 (10%)

Query: 345 VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEAD 404
           V ++ +   A++V+  +        HACDTEVA+IDVK   PV +G V C S+YSGP+ D
Sbjct: 63  VNLIQDEEGARRVLAKIRELGPGHFHACDTEVAQIDVKAVGPVGNGVVTCLSLYSGPDVD 122

Query: 405 FGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHAD 464
           +GNG   +WVD LD      L  F  F E     KVWHNYSFD HVL N+G+ V G   D
Sbjct: 123 YGNG-PYVWVDNLDSA-EGTLQLFKDFLESREYLKVWHNYSFDRHVLYNHGINVQGLGGD 180

Query: 465 TMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIF 524
           TMHMARLW+++R   GGYSLEALT D  ++ + KK                    MK++F
Sbjct: 181 TMHMARLWNTARFQHGGYSLEALTAD--LLLQRKK-------------------PMKELF 219

Query: 525 GRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINTLKLYKSLKKKLLEMSW 582
           G  KL+KDGS GK   +  VEELQR  E R+ WI YS +D+ +T  L++ L+ KL +  W
Sbjct: 220 GIPKLRKDGSKGKERIMPTVEELQRFPEFRKRWIRYSVYDAESTWFLHRVLQHKLDQTFW 279

Query: 583 ------------------KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYL 624
                              +D +P  G SM+DFY++Y   FGE L  +E +GM VD EYL
Sbjct: 280 FENAPKTNAAVNAAAAAAAVDEEPQTG-SMYDFYRQYIILFGECLTDIERKGMHVDLEYL 338

Query: 625 SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPI 684
           + +EK A  ++        KWAS++C +++ +N+ S  Q +QLLF    + K   + LP 
Sbjct: 339 AGVEKQALEDRARLERLVLKWASRYCDESERINLYSAAQKQQLLFAPYYDEKKKKQVLPA 398

Query: 685 ERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNI 744
           ER F+V NTEG I EGK+ P K RN+T+R +G+  P   +TA+G P+   + LK LA N+
Sbjct: 399 ERAFEVENTEGFIEEGKQKPKKKRNMTIRGLGI--PPTHFTASGLPAASAEVLKELAGNV 456

Query: 745 S 745
           S
Sbjct: 457 S 457


>gi|356500355|ref|XP_003518998.1| PREDICTED: DNA polymerase I-like [Glycine max]
          Length = 174

 Score =  289 bits (739), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 137/174 (78%), Positives = 152/174 (87%)

Query: 950  MLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTL 1009
            MLNFSIAYGKTPVGL++DWKV+V EA++TVDLWYN+R+EVL WQ+ RKKE+     VHTL
Sbjct: 1    MLNFSIAYGKTPVGLSKDWKVTVTEARRTVDLWYNDRKEVLKWQKERKKEACESQRVHTL 60

Query: 1010 LGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLL 1069
            LGRARRFP I       + HIERAAINTPVQGSAADVAMCAMLEIS N +LKELGWKLLL
Sbjct: 61   LGRARRFPKIDLANNYHKGHIERAAINTPVQGSAADVAMCAMLEISNNMKLKELGWKLLL 120

Query: 1070 QVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            QVHDEVILEGP+ESAEVAKAIVVECM+KPFNG+N LRV LSVDA CAQNWY+AK
Sbjct: 121  QVHDEVILEGPTESAEVAKAIVVECMTKPFNGENFLRVGLSVDANCAQNWYAAK 174


>gi|159475854|ref|XP_001696029.1| hypothetical protein CHLREDRAFT_175586 [Chlamydomonas reinhardtii]
 gi|158275200|gb|EDP00978.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 259

 Score =  253 bits (645), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 131/246 (53%), Positives = 162/246 (65%), Gaps = 36/246 (14%)

Query: 797  EVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYK 856
            +V +ID L+S FI+PLQ                                  PALEKDRYK
Sbjct: 6    QVNAIDKLLSAFIIPLQ----------------------------------PALEKDRYK 31

Query: 857  IRQAFIA--VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIR 914
            +RQAF A    G++L+VADYGQLELR+LAH+ +CKSML+AF  GGDFHSRTA+ MY HI+
Sbjct: 32   VRQAFTADVAAGHTLVVADYGQLELRLLAHMTDCKSMLEAFVLGGDFHSRTAVGMYDHIK 91

Query: 915  NAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEE 974
            +A+   +VLLEW GE + P+PL+KD +ASERRKAK+LNFSIAYGKT  GLA D+K S EE
Sbjct: 92   DAIRDNKVLLEWDGEGESPLPLVKDLYASERRKAKVLNFSIAYGKTAHGLAADFKTSKEE 151

Query: 975  AKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAA 1034
            A+ TVD WY +R EV  WQE  K+ +R +  V TLLGR R  P I +     + H ERAA
Sbjct: 152  AQATVDKWYADRFEVRQWQEKTKEGARQEGKVRTLLGRTRPLPGINAPDFKSKGHSERAA 211

Query: 1035 INTPVQ 1040
            INTP+Q
Sbjct: 212  INTPIQ 217


>gi|307106559|gb|EFN54804.1| hypothetical protein CHLNCDRAFT_134785 [Chlorella variabilis]
          Length = 471

 Score =  247 bits (631), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 123/209 (58%), Positives = 155/209 (74%), Gaps = 3/209 (1%)

Query: 918  ETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKK 977
            E  + LLEW GE  PP+PLLKD FASERRKAK+LNFSIAYGKT  GL++DWKVS+EEAK 
Sbjct: 263  EKRRCLLEWEGEGSPPLPLLKDLFASERRKAKVLNFSIAYGKTAHGLSKDWKVSLEEAKD 322

Query: 978  TVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP-AIKSLTRSQRNHIERAAIN 1036
            TVD WY +R E+  WQ+ ++++++   +V T+LGR R+ P A  S  R+ ++H  RAAIN
Sbjct: 323  TVDRWYADRPEIRKWQDEQRRQAQQRGYVTTILGRRRQLPDAALSRNRAAQSHALRAAIN 382

Query: 1037 TPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMS 1096
            TP+QGSAAD+A  AML I+++  L+ +GW+LLLQVHDEVILEGP E+AE+A+  VV CM 
Sbjct: 383  TPIQGSAADIATAAMLRINEDEALQSMGWRLLLQVHDEVILEGPRETAELARERVVACMR 442

Query: 1097 KPFN--GKNNLRVDLSVDAKCAQNWYSAK 1123
             PF   G   L VDL VDAK A  WY AK
Sbjct: 443  SPFTGLGPKPLLVDLVVDAKHADTWYEAK 471



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 87/142 (61%), Gaps = 7/142 (4%)

Query: 594 MFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDA 653
           M+D Y   W PFG +L  ME  GM VDR +L+  ++ A+A+Q+ A +RFR+WA++   DA
Sbjct: 31  MWDVYCRAWLPFGALLTDMEAVGMAVDRSHLAAAQQQAQADQQRAQDRFRRWAARKVGDA 90

Query: 654 KYMNVGSDTQLRQLLFGGKPNSKDD--SESLPIERIFKVPNTEGVIAEGKKTPSKFRNIT 711
           ++MNVGS  Q++ LLF G  N   D   + LP+ER+FK+PN  G++ E  K P K  +I 
Sbjct: 91  QHMNVGSGAQVQTLLFAGAENRDKDKGKDPLPLERVFKIPNAMGLMGEKDKRPKKMWDIR 150

Query: 712 LRSI---GVDLP--TEMYTATG 728
           L S+   G   P   E++T  G
Sbjct: 151 LHSVWGQGTKSPLTPEVFTPAG 172


>gi|302840030|ref|XP_002951571.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f. nagariensis]
 gi|300263180|gb|EFJ47382.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f. nagariensis]
          Length = 1758

 Score =  207 bits (526), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 115/212 (54%), Positives = 148/212 (69%), Gaps = 14/212 (6%)

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
            C+SM +AF+ GGDFHSRTA  MY +I+ AV+ G+  LEW G+ +P  PL+KD +ASERRK
Sbjct: 3    CRSMKEAFELGGDFHSRTAYGMYEYIQEAVKNGECYLEWEGQGEPDKPLVKDKYASERRK 62

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK+LNFSIAYGKT  GLA D+K + EEA++TVD WY++R     W+E +         V 
Sbjct: 63   AKVLNFSIAYGKTAHGLAVDFKTTKEEAQETVDKWYSDR-----WEEFK---------VR 108

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            TLLGR R  P I S       H  RAAINTP+QGSAADVA  AM+ I K+  L+  G+KL
Sbjct: 109  TLLGRTRPLPNISSPDFRLSGHSNRAAINTPIQGSAADVAAAAMVAIHKSEALRATGFKL 168

Query: 1068 LLQVHDEVILEGPSESAEVAKAIVVECMSKPF 1099
            L+Q+HDEVILEGP + +E AK +V+E M+ P+
Sbjct: 169  LMQIHDEVILEGPRDRSEDAKRLVMELMANPW 200


>gi|409400480|ref|ZP_11250543.1| DNA polymerase I [Acidocella sp. MX-AZ02]
 gi|409130543|gb|EKN00301.1| DNA polymerase I [Acidocella sp. MX-AZ02]
          Length = 901

 Score =  206 bits (523), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 169/304 (55%), Gaps = 28/304 (9%)

Query: 820  KNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            K GRVH +  +  T TGRLS+  PNLQN P   ++  +IR+AFIA PG+SLI ADY Q+E
Sbjct: 624  KTGRVHTNFQMAATTTGRLSSTDPNLQNIPIRTEEGARIRKAFIAAPGHSLISADYSQIE 683

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+A+  ++  +F+ G D H+RTA  ++         G  ++E  G          
Sbjct: 684  LRLLAHVADIPALKQSFETGEDIHARTASEVF---------GVPMVEMDG---------- 724

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                + RR+AK +NF I YG +  GLAR   +S  EAK  +D ++    E+  + +A K+
Sbjct: 725  ----ATRRRAKAINFGIIYGISAFGLARQLGISAGEAKSYIDAYFKRYPEIRAYMDATKE 780

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R D +V T  GR    P IK    + R + ER AIN P+QG A+D+   AM+ + K  
Sbjct: 781  QARTDGYVLTPFGRRCWVPRIKDKIPALRAYAERQAINAPLQGGASDIIKRAMVRLPKAL 840

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
                L  KLLLQVHDE++ E P + AE A A+V E M     G   L V L V+    +N
Sbjct: 841  ADAGLSTKLLLQVHDELLFETPDDEAEKAAALVKEVM----QGAATLSVPLVVETGVGKN 896

Query: 1119 WYSA 1122
            W  A
Sbjct: 897  WGKA 900


>gi|435853194|ref|YP_007314513.1| DNA polymerase I [Halobacteroides halobius DSM 5150]
 gi|433669605|gb|AGB40420.1| DNA polymerase I [Halobacteroides halobius DSM 5150]
          Length = 856

 Score =  202 bits (513), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/331 (36%), Positives = 181/331 (54%), Gaps = 33/331 (9%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQP 848
            + I  + E  S+  L S ++ PL+ S ++ K GR+H +     T TGRLS+R PNLQN P
Sbjct: 552  EIIPLISEYRSLTKLKSTYVDPLE-SYINEKTGRIHTNFKQQVTATGRLSSREPNLQNIP 610

Query: 849  ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
               ++  KIRQ F+A  G  L+ ADY Q+ELR+LAH++  + +  A++ G D H++TA  
Sbjct: 611  IRTEEGRKIRQVFVAQEGYKLVAADYSQVELRVLAHISQDERLKKAYQQGLDIHTQTAKE 670

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      + T Q                       RRKAK +NF IAYG +  GLA   
Sbjct: 671  LF-----GISTKQT----------------------RRKAKAVNFGIAYGISDWGLADRL 703

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
            K++  EAK+ +DL+++   +V  + + + ++++   +V T+  R R  P I S    +R 
Sbjct: 704  KINKREAKEYIDLYFSRYPKVKEYIDDKIRQAKKQGYVTTIFDRKRYLPEINSRNYHKRQ 763

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AINTP+QGSAAD+   AML+++K    +EL   +LLQVHDE++LE P +  +   
Sbjct: 764  FAERTAINTPIQGSAADIMKLAMLDVAKALEKEELASDILLQVHDELVLEVPKDEVKKVA 823

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             +V + M        NL V L VD K   NW
Sbjct: 824  KLVKKRMEDTV----NLDVPLEVDVKVGDNW 850


>gi|337287066|ref|YP_004626539.1| DNA polymerase I [Thermodesulfatator indicus DSM 15286]
 gi|335359894|gb|AEH45575.1| DNA polymerase I [Thermodesulfatator indicus DSM 15286]
          Length = 903

 Score =  201 bits (511), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 183/352 (51%), Gaps = 37/352 (10%)

Query: 779  FATEQEAREACDAISAL----CEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            ++T+ E  E   A+  L     E  ++  L S ++  LP     V+ + GR+H S N   
Sbjct: 581  YSTDNEVLEELSAVHELPRLILEYRTLAKLKSTYVDALP---KMVNPETGRLHTSFNQTV 637

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   ++  KIRQAF+   G   + ADY Q++LR+LAH +  +++
Sbjct: 638  TATGRLSSSDPNLQNIPVRGEEGLKIRQAFVPEEGFLFLSADYSQIDLRVLAHYSGDETL 697

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            + AF  G D H RTA  ++                     PP    ++     RR AK +
Sbjct: 698  IKAFWQGEDIHRRTAAEIF-------------------GIPP----EEVTPEMRRMAKTI 734

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +P GLA++ K+   EAK  ++ ++     V  + E    E+R   +V TL G
Sbjct: 735  NFGIVYGMSPYGLAKELKIGRREAKAFIERYFERYPGVKRYMEQIVAEAREKGYVETLFG 794

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S  R+ R   ER AINTP+QG+AAD+   AM++I +  + K  G ++LLQV
Sbjct: 795  RKRPLPDINSPNRTAREFAERTAINTPIQGTAADIIKLAMIKIHRIFKEKGFGTRMLLQV 854

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            HDE++ E P +  E  + IV + M     G   L+V L V+    +NW  AK
Sbjct: 855  HDELLFEVPEKEIEEIQPIVRQIM----EGVVELKVPLKVNLAIGKNWAEAK 902



 Score = 62.8 bits (151), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 128/321 (39%), Gaps = 82/321 (25%)

Query: 363 NKYKHLVH-ACDTEVAKIDVKQET--PVDHGEVICFSI-YSGPEADF--------GNGKS 410
           +K K +V  A   EV  ID++ +T  P+  G+++  S+ ++ P+A +           K 
Sbjct: 312 DKVKEIVEKAKGAEVVAIDLESDTKDPM-RGKIVGVSLCFNPPKAYYFPFRHEGLEAQKQ 370

Query: 411 CIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMAR 470
             W         +     A   EDPS+KK+ HN  +D  +L  YG+ + G   DTM  + 
Sbjct: 371 LPW---------EAFTHLASLIEDPSVKKIGHNIKYDLIILARYGVTLKGLEGDTMLASY 421

Query: 471 LWDSSRRTEGGYSL-EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKL 529
           L D +RRT G   L E + G   +     K   K+++KG +             F R  L
Sbjct: 422 LLDPTRRTHGLDELAEEVLGHTMI---SYKEVTKELAKGES-------------FARVPL 465

Query: 530 KKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPV 589
           +K     K+                   Y+  D+  T  LY+    KL E          
Sbjct: 466 EK----AKV-------------------YACEDAHVTYLLYQYFWPKLKE---------- 492

Query: 590 PGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASK- 648
             +S++  + E  +P  E+L  ME  G+ +D  YL       R        + ++   K 
Sbjct: 493 --ESLWKVFTEIDRPLIEVLAHMEMVGIKIDTAYL-------RGLSREMAEKLKELEEKI 543

Query: 649 HCPDAKYMNVGSDTQLRQLLF 669
           +    +  N+ S  QL Q+LF
Sbjct: 544 YTLAGEKFNINSSKQLGQILF 564


>gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis]
          Length = 932

 Score =  199 bits (506), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 127/318 (39%), Positives = 174/318 (54%), Gaps = 35/318 (11%)

Query: 809  ILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA-LEKDRYKIRQAFIAV-P 865
            +LPL    + G  GR+H S N + T TGRLS+  PNLQN P  LE+ R+ IR+AFIA  P
Sbjct: 641  LLPL----IDGPEGRIHTSFNQSVTATGRLSSTEPNLQNIPVRLEQGRH-IRKAFIAPEP 695

Query: 866  GNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLE 925
            G +L+ ADY Q+ELRILAHL++  S  DAF    D H+RTA  ++      V  G V  E
Sbjct: 696  GWTLLAADYSQIELRILAHLSDDPSFKDAFAKNQDIHTRTASEVF-----DVPMGNVTRE 750

Query: 926  WHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNE 985
                               RR+AK +NF I YG +  GL+RD  V+  EAK+ ++ ++  
Sbjct: 751  M------------------RRRAKAVNFGIVYGISDFGLSRDLGVTRGEAKEYIEGYFRR 792

Query: 986  RQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAAD 1045
               V  + +    E+R    V TLLGR RR P +    + ++N  ER A+NTP+QG+AAD
Sbjct: 793  YHGVRGYIDRIIAEARQQGFVTTLLGRRRRLPDLFVKNKIRQNFGERTAMNTPIQGTAAD 852

Query: 1046 VAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNL 1105
            +   AM++I K  +   L  ++LLQVHDE+I E P E   V   ++   M K       +
Sbjct: 853  IIKAAMVKIPKALKDHGLKTRMLLQVHDELIFEVPEEELTVVAPLIKRIMEKTI----EI 908

Query: 1106 RVDLSVDAKCAQNWYSAK 1123
             V L+VD K   NWY  K
Sbjct: 909  SVPLTVDVKKGANWYDMK 926


>gi|182679659|ref|YP_001833805.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635542|gb|ACB96316.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 1043

 Score =  199 bits (506), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 119/305 (39%), Positives = 169/305 (55%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++  +GRVH S  +  T TGRLS+  PNLQN P   +   KIR+AFIA PG  L+ ADY 
Sbjct: 759  INPSSGRVHTSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRRAFIAPPGRKLVSADYS 818

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+ KS+ +AF    D H+ TA  M+                       VP
Sbjct: 819  QIELRLLAHIADIKSLKNAFAENLDIHAMTASEMFG----------------------VP 856

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA   +  ++     +  + +
Sbjct: 857  V--EGMPSEIRRRAKAINFGIIYGISAFGLANQLAIPREEAAAYIKKYFERFPGIRAYMD 914

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              KK++R + +V T+ GR   +P IK+   S+R   ERAAIN P+QGSAAD+   AM+ +
Sbjct: 915  DTKKKARENGYVETIFGRKCHYPRIKASNPSERALNERAAINAPIQGSAADIIRRAMIHM 974

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  ++L  ++LLQVHDE+I E P +  E   A+V + M +      +L V L VDAK
Sbjct: 975  EAALAAEKLSAQMLLQVHDELIFEVPDDEVEATIAVVRKIMVEAPLPAVHLSVPLQVDAK 1034

Query: 1115 CAQNW 1119
             AQNW
Sbjct: 1035 AAQNW 1039



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 109/280 (38%), Gaps = 62/280 (22%)

Query: 399 SGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKV 458
           SG   D   GK  +   L  G    +L    P  EDPSI K+  N  +D  VL+ +G+++
Sbjct: 491 SGEGQDLFEGKGLLPGQLPIG---VVLERLKPLLEDPSILKIGQNVKYDWIVLKQHGVEM 547

Query: 459 SGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKI 518
                DT+ ++ + D+                                 G TD G M  +
Sbjct: 548 RPLD-DTLLLSYVLDA---------------------------------GLTDHG-MDVL 572

Query: 519 SMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLL 578
           S K + G + +     AG   T        R   +    Y+A D+  TL+L++ LK +L 
Sbjct: 573 SEKHL-GHKPIPFSAVAGSGRTFI---GFARVAIDKATEYAAEDADVTLRLWRVLKPRL- 627

Query: 579 EMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAA 638
                      P + M   Y+   +P  ++L +ME  G+ +D   L       R   + A
Sbjct: 628 -----------PAEKMTTVYETLERPMIDVLARMERRGVAIDPPLLG------RLSSDFA 670

Query: 639 VNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSK 676
            +  R  A  +    +  N+GS  QL  +LFG  G P +K
Sbjct: 671 QDMARYEAEIYELAGEKFNLGSPKQLGDILFGKLGLPGAK 710


>gi|167629830|ref|YP_001680329.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
 gi|167592570|gb|ABZ84318.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
          Length = 939

 Score =  199 bits (506), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 127/319 (39%), Positives = 178/319 (55%), Gaps = 37/319 (11%)

Query: 809  ILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPA-LEKDRYKIRQAFIAVPG 866
            +LPL    + G++GR+H S N   T TGRLS+  PNLQN P  LE+ R +IR+AF A PG
Sbjct: 651  LLPL----IDGEDGRIHTSFNQAVTATGRLSSTEPNLQNIPVRLEQGR-RIRKAFTA-PG 704

Query: 867  N--SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLL 924
            +  +L+ ADY Q+ELRILAHL+   S  DAF    D H+RTA  ++              
Sbjct: 705  DDWTLLAADYSQIELRILAHLSGDPSFKDAFAKNQDIHTRTASEVFG------------- 751

Query: 925  EWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYN 984
                     VP+ ++  +  RR+AK +NF I YG +  GL+RD  V   EA++ +D +++
Sbjct: 752  ---------VPM-ENVTSEMRRRAKAVNFGIVYGISDFGLSRDLGVLRAEARQYIDGYFD 801

Query: 985  ERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAA 1044
                V  + +    E+R   +V TLLGR RR P +    + ++N  ERAA+NTP+QG+AA
Sbjct: 802  RYSGVKGYIDEIIAEARRQGYVTTLLGRRRRLPDLFVKNKIRQNFGERAAMNTPIQGTAA 861

Query: 1045 DVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNN 1104
            D+   AM+ I      K L  ++LLQVHDE+I E P E    A A++ E M +       
Sbjct: 862  DIIKAAMVRIPGLLAAKGLKTRMLLQVHDELIFEAPKEELSEAAALIRETMEQTI----R 917

Query: 1105 LRVDLSVDAKCAQNWYSAK 1123
            L V L+VD K   NWY  K
Sbjct: 918  LDVPLTVDVKTGPNWYEMK 936


>gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46]
 gi|383116450|ref|ZP_09937198.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|423259554|ref|ZP_17240477.1| DNA polymerase I [Bacteroides fragilis CL07T00C01]
 gi|423263472|ref|ZP_17242475.1| DNA polymerase I [Bacteroides fragilis CL07T12C05]
 gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46]
 gi|382973754|gb|EES88569.2| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|387777134|gb|EIK39234.1| DNA polymerase I [Bacteroides fragilis CL07T00C01]
 gi|392706894|gb|EIZ00014.1| DNA polymerase I [Bacteroides fragilis CL07T12C05]
          Length = 935

 Score =  197 bits (502), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 182/351 (51%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     D I  + E   +  L+S +I  LP     ++ K GR+H S N   
Sbjct: 614  YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP---QLINPKTGRIHTSFNQTV 670

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M
Sbjct: 671  TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNM 730

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y      V+                  +K+  A  RRKAK  
Sbjct: 731  IDAFLSGYDIHAATAAKIY-----KVD------------------IKEVTADMRRKAKTA 767

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    +V ++ +   + +R   +V T+  
Sbjct: 768  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFH 827

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV
Sbjct: 828  RKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQV 887

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+    P++  E+ + +V+E M K +     + V L  D     NW  A
Sbjct: 888  HDELNFSVPAKEKEIVEQVVIEEMEKAY----RMHVPLKADCGWGTNWLEA 934


>gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16]
 gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16]
          Length = 941

 Score =  197 bits (502), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 182/351 (51%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     D I  + E   +  L+S +I  LP     ++ K GR+H S N   
Sbjct: 620  YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP---QLINPKTGRIHTSFNQTV 676

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M
Sbjct: 677  TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNM 736

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y      V+                  +K+  A  RRKAK  
Sbjct: 737  IDAFLSGYDIHAATAAKIY-----KVD------------------IKEVTADMRRKAKTA 773

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    +V ++ +   + +R   +V T+  
Sbjct: 774  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFH 833

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV
Sbjct: 834  RKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQV 893

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+    P++  E+ + +V+E M K +     + V L  D     NW  A
Sbjct: 894  HDELNFSVPAKEKEIVEQVVIEEMEKAY----RMHVPLKADCGWGTNWLEA 940


>gi|423248112|ref|ZP_17229128.1| DNA polymerase I [Bacteroides fragilis CL03T00C08]
 gi|423253061|ref|ZP_17233992.1| DNA polymerase I [Bacteroides fragilis CL03T12C07]
 gi|392656961|gb|EIY50598.1| DNA polymerase I [Bacteroides fragilis CL03T12C07]
 gi|392660532|gb|EIY54142.1| DNA polymerase I [Bacteroides fragilis CL03T00C08]
          Length = 935

 Score =  197 bits (502), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 182/351 (51%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     D I  + E   +  L+S +I  LP     ++ K GR+H S N   
Sbjct: 614  YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP---QLINPKTGRIHTSFNQTV 670

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M
Sbjct: 671  TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNM 730

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y      V+                  +K+  A  RRKAK  
Sbjct: 731  IDAFLSGYDIHAATAAKIY-----KVD------------------IKEVTADMRRKAKTA 767

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    +V ++ +   + +R   +V T+  
Sbjct: 768  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFH 827

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV
Sbjct: 828  RKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQV 887

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+    P++  E+ + +V+E M K +     + V L  D     NW  A
Sbjct: 888  HDELNFSVPAKEKEIVEQVVIEEMEKAY----RMHVPLKADCGWGTNWLEA 934


>gi|60679700|ref|YP_209844.1| DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|375356484|ref|YP_005109255.1| putative DNA polymerase I [Bacteroides fragilis 638R]
 gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R]
          Length = 941

 Score =  197 bits (502), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 182/351 (51%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     D I  + E   +  L+S +I  LP     ++ K GR+H S N   
Sbjct: 620  YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP---QLINPKTGRIHTSFNQTV 676

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M
Sbjct: 677  TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNM 736

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y      V+                  +K+  A  RRKAK  
Sbjct: 737  IDAFLSGYDIHAATAAKIY-----KVD------------------IKEVTADMRRKAKTA 773

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    +V ++ +   + +R   +V T+  
Sbjct: 774  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFH 833

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV
Sbjct: 834  RKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQV 893

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+    P++  E+ + +V+E M K +     + V L  D     NW  A
Sbjct: 894  HDELNFSVPAKEKEIVEQVVIEEMEKAY----RMHVPLKADCGWGTNWLEA 940


>gi|423270007|ref|ZP_17248979.1| DNA polymerase I [Bacteroides fragilis CL05T00C42]
 gi|423272538|ref|ZP_17251485.1| DNA polymerase I [Bacteroides fragilis CL05T12C13]
 gi|392700049|gb|EIY93217.1| DNA polymerase I [Bacteroides fragilis CL05T00C42]
 gi|392708804|gb|EIZ01908.1| DNA polymerase I [Bacteroides fragilis CL05T12C13]
          Length = 935

 Score =  197 bits (502), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 182/351 (51%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     D I  + E   +  L+S +I  LP     ++ K GR+H S N   
Sbjct: 614  YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP---QLINPKTGRIHTSFNQTV 670

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M
Sbjct: 671  TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNM 730

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y      V+                  +K+  A  RRKAK  
Sbjct: 731  IDAFLSGYDIHAATAAKIY-----KVD------------------IKEVTADMRRKAKTA 767

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    +V ++ +   + +R   +V T+  
Sbjct: 768  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFH 827

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV
Sbjct: 828  RKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQV 887

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+    P++  E+ + +V+E M K +     + V L  D     NW  A
Sbjct: 888  HDELNFSVPAKEKEIVEQVVIEEMEKAY----RMHVPLKADCGWGTNWLEA 934


>gi|256830888|ref|YP_003159616.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
 gi|256580064|gb|ACU91200.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
          Length = 861

 Score =  197 bits (502), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/332 (35%), Positives = 181/332 (54%), Gaps = 32/332 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            ++ + E    + L S ++ P+    ++ KNGR+H + N + T TGRLS+  PNLQN P  
Sbjct: 559  VADVLEFRMYEKLRSTYLEPM--PQLADKNGRIHTTFNQLATATGRLSSSNPNLQNIPIR 616

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
                 ++R  F+A PGN L+ ADY Q+ELR+LAH++  +++ +AF AG D H+RTA  ++
Sbjct: 617  GALGPRMRSCFVASPGNRLVAADYSQIELRVLAHMSGDQTLTEAFAAGDDIHARTAGILF 676

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                   +T +V                   A ERRKAK +NF + YG  P  L R+  +
Sbjct: 677  -------DTTEV------------------SADERRKAKTINFGLLYGMGPQKLGRELGI 711

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
            S++EAK+ + +++++   V  + E  +  ++   +V TL GR R  P I S   +     
Sbjct: 712  SLKEAKEFIAVYFSKLSRVREFYEEIEAGAKSLGYVTTLAGRRRMLPEINSRNTNMAQQA 771

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAI 1090
             R AINT VQGSAAD+   AMLE+ K+  + ELG  L+LQ+HDE++LE P+  A      
Sbjct: 772  RRMAINTVVQGSAADIIKKAMLEVDKSPVIGELGASLILQIHDELLLEAPAARAREVGEA 831

Query: 1091 VVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            V   M+  +    +L V L VD     +W +A
Sbjct: 832  VAGIMASVY----SLSVPLVVDWGVGDDWSAA 859


>gi|336407634|ref|ZP_08588130.1| hypothetical protein HMPREF1018_00145 [Bacteroides sp. 2_1_56FAA]
 gi|335944713|gb|EGN06530.1| hypothetical protein HMPREF1018_00145 [Bacteroides sp. 2_1_56FAA]
          Length = 964

 Score =  197 bits (502), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 182/351 (51%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     D I  + E   +  L+S +I  LP     ++ K GR+H S N   
Sbjct: 643  YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP---QLINPKTGRIHTSFNQTV 699

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M
Sbjct: 700  TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNM 759

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y      V+                  +K+  A  RRKAK  
Sbjct: 760  IDAFLSGYDIHAATAAKIY-----KVD------------------IKEVTADMRRKAKTA 796

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    +V ++ +   + +R   +V T+  
Sbjct: 797  NFGIIYGISIFGLAERMNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFH 856

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV
Sbjct: 857  RKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQV 916

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+    P++  E+ + +V+E M K +     + V L  D     NW  A
Sbjct: 917  HDELNFSVPAKEKEIVEQVVIEEMEKAY----RMHVPLKADCGWGTNWLEA 963


>gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
 gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
          Length = 891

 Score =  197 bits (502), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 190/714 (26%), Positives = 296/714 (41%), Gaps = 188/714 (26%)

Query: 419  GGG------RD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
            GGG      RD ++ +  P  ED ++ KV  N  +D  VL   G+ + G  ADTM  + L
Sbjct: 355  GGGAEEQLPRDEVVAQVQPLLEDATLAKVGQNLKYDALVLRRAGIALRGVVADTMLQSYL 414

Query: 472  WDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
               + R+ G   L+AL  D   +     +Y +    G    GF                 
Sbjct: 415  LYPAARSHG---LDALAADH--LGYKMISYSEVAGTGKKQIGF----------------- 452

Query: 532  DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG 591
            D  A  ++T                 Y+A D+  TL+LY+    +L       DG     
Sbjct: 453  DEVALDVAT----------------RYAAEDADITLQLYQRFDAEL-------DG----- 484

Query: 592  KSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCP 651
             ++ + ++    P  ++L+ ME  G+ VDRE L                           
Sbjct: 485  -TLRELFETVEMPLLQVLIDMEWWGVRVDRERL--------------------------- 516

Query: 652  DAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNIT 711
            DA  ++ G  T ++QL                 ++I+++   E  I     +P +   I 
Sbjct: 517  DA--LSAGFSTSIKQLE----------------QQIYELAGEEFNI----NSPKQLGVIL 554

Query: 712  LRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGA 771
               +  DLP    T TGW S   D LK LA                              
Sbjct: 555  FEKL--DLPHGKKTKTGW-STAVDVLKNLA------------------------------ 581

Query: 772  VASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN 829
                           +  D ++ + +  S+  L   +   LPL    +   +GR+H S N
Sbjct: 582  ---------------DKHDVVALILQYRSLAKLKGTYTDALPLL---IHPDSGRIHTSFN 623

Query: 830  -INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
               T TGRLS+  PNLQN P   ++   IR+AF+   G  L+ ADY Q+ELR++AH+A+ 
Sbjct: 624  QAVTATGRLSSSDPNLQNIPIRSEEGRAIREAFVPDAGQVLLAADYSQIELRVMAHMADE 683

Query: 889  KSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKA 948
              + ++F+ G D H RTA  ++    + V++                         RR+A
Sbjct: 684  PILQESFRQGEDIHQRTASEIFSVFPDMVDS-----------------------EMRRRA 720

Query: 949  KMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHT 1008
            K +NF + YG     LA+D  +S +EAK+ +D ++     VL + E +K+  R   +V T
Sbjct: 721  KTINFGVLYGMGAFSLAKDLGISNKEAKQYIDHYFERYPAVLEFIEQQKQFGREHLYVET 780

Query: 1009 LLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLL 1068
            LLGR      I S     R++ ER A+N PVQGSAAD+   AM+ I +  +  +L  +++
Sbjct: 781  LLGRRCAVSDINSKNGQVRSYAERNAVNYPVQGSAADIIKVAMVRIHQRLQDLQLKTRMV 840

Query: 1069 LQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            LQVHDE++ + P +  +   A+VV+ M +       LRV L V      NW  A
Sbjct: 841  LQVHDELVFDVPKDEVDDVVALVVQEMEQAV----ELRVPLEVSLGRGANWREA 890


>gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583]
 gi|421760161|ref|ZP_16196982.1| DNA polymerase I [Bartonella bacilliformis INS]
 gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583]
 gi|411176633|gb|EKS46650.1| DNA polymerase I [Bartonella bacilliformis INS]
          Length = 968

 Score =  197 bits (500), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 164/306 (53%), Gaps = 24/306 (7%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S +S K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA  G  L+ AD
Sbjct: 682  SYISPKTGRVHTNYSLATTSTGRLSSSEPNLQNIPIRTIEGRKIRTAFIASEGCLLLSAD 741

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+A+  ++ +AF  G D H+ TA  M+           V +E    D   
Sbjct: 742  YSQIELRLLAHIADITALKEAFAQGQDIHAMTASQMF----------GVAIERMSSDV-- 789

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       RR+AK +NF I YG +  GLA    +S EEA   + +++     + ++ 
Sbjct: 790  -----------RRRAKAINFGIIYGISAFGLANQLGISREEASHYIRVYFERFPGIQSYM 838

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            EA K  +R   +V T+ GR   +P IK+  R  R   ERAAIN P+QGSAAD+   AM++
Sbjct: 839  EATKIFARQHGYVETIFGRRIHYPEIKARDRQVRAFNERAAINAPIQGSAADIIRRAMIQ 898

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            +      + L  K+LLQVHDE+I E P   +E  KAIV + M        +L V L V  
Sbjct: 899  MEGALEKEGLSAKMLLQVHDELIFEIPKAESEKTKAIVKKVMENATMPALSLSVPLEVKV 958

Query: 1114 KCAQNW 1119
              AQNW
Sbjct: 959  MVAQNW 964


>gi|423282583|ref|ZP_17261468.1| DNA polymerase I [Bacteroides fragilis HMW 615]
 gi|404582151|gb|EKA86846.1| DNA polymerase I [Bacteroides fragilis HMW 615]
          Length = 964

 Score =  196 bits (499), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 124/351 (35%), Positives = 182/351 (51%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     D I  + E   +  L+S +I  LP     ++ + GR+H S N   
Sbjct: 643  YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP---QLINPQTGRIHTSFNQTV 699

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M
Sbjct: 700  TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNM 759

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y      V+                  +K+  A  RRKAK  
Sbjct: 760  IDAFLSGYDIHAATAAKIY-----KVD------------------IKEVTADMRRKAKTA 796

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    +V ++ +   + +R   +V T+  
Sbjct: 797  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFH 856

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV
Sbjct: 857  RKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQV 916

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+    P++  E+ + +V+E M K +     + V L  D     NW  A
Sbjct: 917  HDELNFSVPAKEKEIVEQVVIEEMEKAY----RMHVPLKADCGWGTNWLEA 963


>gi|386580284|ref|YP_006076689.1| DNA polymerase I [Streptococcus suis JS14]
 gi|319758476|gb|ADV70418.1| DNA polymerase I [Streptococcus suis JS14]
          Length = 878

 Score =  196 bits (498), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 183/336 (54%), Gaps = 32/336 (9%)

Query: 791  AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
             +S + E   I  L S +++ LQ + +  ++G++H   +   T+TGRLS+  PNLQN P 
Sbjct: 572  VVSKILEYRQITKLQSTYVVGLQDAIL--EDGKIHTRYVQDLTQTGRLSSTDPNLQNIPV 629

Query: 850  -LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
             LE+ R  IR+AF+    NS+++A DY Q+ELR+LAH++  K +++AF+ G D H+ TAM
Sbjct: 630  RLEQGRL-IRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAM 688

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
             ++      +E          ED  P         ++RR AK +NF + YG +  GL+ +
Sbjct: 689  RVF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLSNN 726

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ +EAK  +D ++     +  + E   +E+R   +V T+  R R  P I S   + R
Sbjct: 727  LGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVR 786

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVA 1087
            N  ER AIN+P+QGSAAD+   AM+ + K      L  ++LLQVHDE++LE P    E  
Sbjct: 787  NFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETV 846

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            KA+V E M        +L V L VD      WY AK
Sbjct: 847  KAMVKETMESAI----SLSVPLIVDENEGPTWYEAK 878


>gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis sp. HTCC2633]
 gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
          Length = 924

 Score =  196 bits (498), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 113/307 (36%), Positives = 164/307 (53%), Gaps = 24/307 (7%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++   GRVH S ++  T TGRLS+  PNLQN P   ++  KIR+AF A PG+ ++ ADY 
Sbjct: 640  INPNTGRVHTSFSLAATTTGRLSSSEPNLQNIPIRTEEGRKIREAFTAEPGHVIVAADYS 699

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+ +++  AF+ G D H+ TA  M+                       VP
Sbjct: 700  QIELRLLAHIADVEALKQAFREGQDIHALTASEMFG----------------------VP 737

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            L ++   + RR AK +NF I YG +  GLA +  +  +EAK  +D ++ +   +  + +A
Sbjct: 738  L-ENMDPTTRRNAKAINFGIIYGISAFGLANNLGIGRDEAKSYIDSYFKKFPGIKDYMDA 796

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             K E++    V T+ GR    P IK    S R   ER AIN P+QG+AAD+   AM+ + 
Sbjct: 797  MKDEAKAKGCVSTIFGRRIHLPGIKDKNPSVRQFTERQAINAPIQGAAADIIRRAMVRMP 856

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
                   L  ++LLQVHDE++ E P   A+    +V E MS       NL V L V+AK 
Sbjct: 857  GALSDAGLKTRMLLQVHDELVFEAPESEADQVIKLVTEVMSTAALPAQNLSVPLEVEAKA 916

Query: 1116 AQNWYSA 1122
            A  W  A
Sbjct: 917  ASTWGQA 923



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 110/276 (39%), Gaps = 76/276 (27%)

Query: 415 DLLDGGGR-------DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMH 467
           DL DGG +       + L       E+ +I KV  N+ +D  V + YG++V+ +  DTM 
Sbjct: 378 DLADGGMKPDQIDESEALGRLKAILENDAILKVGQNFKYDLAVFQRYGVRVAPYD-DTML 436

Query: 468 MARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR 527
           ++ +  +     G   L     +R +              G+T       IS K++ G  
Sbjct: 437 ISYVQAAGLHNHGMDEL----AERHL--------------GHT------CISFKEVCGTG 472

Query: 528 KLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGK 587
           K +K  S   + T                 Y+A D+  TL+L++ LK  L          
Sbjct: 473 KSQKRFSEIDLKTAT--------------EYAAEDADITLRLWELLKAGL---------- 508

Query: 588 PVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRF 642
              GK +   Y+   +P  ++L  ME  G+ VD   LS +     +K+A AE+ A     
Sbjct: 509 --AGKGLSTVYETLERPLPQVLTDMELAGVKVDVAQLSRLSSDFAQKMAEAEETA----- 561

Query: 643 RKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSK 676
                 H       N+GS  Q+ ++LFG  G P  K
Sbjct: 562 ------HKLAGTKFNLGSPKQIGEILFGEMGLPGGK 591


>gi|423281298|ref|ZP_17260209.1| DNA polymerase I [Bacteroides fragilis HMW 610]
 gi|404583206|gb|EKA87888.1| DNA polymerase I [Bacteroides fragilis HMW 610]
          Length = 964

 Score =  196 bits (497), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 124/351 (35%), Positives = 180/351 (51%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     D I  + E   +  L+S +I  LP     ++ + GR+H S N   
Sbjct: 643  YVTSEEVLESLRNKHDVIGKILEYRGLKKLLSTYIDALP---QLINPRTGRIHTSFNQTV 699

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M
Sbjct: 700  TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNM 759

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y      V+                  +K+  A  RRKAK  
Sbjct: 760  IDAFLSGYDIHAATAAKIY-----KVD------------------IKEVTADMRRKAKTA 796

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    +V  + +   + +R   +V T+  
Sbjct: 797  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQVKAYMDKSIQVAREHGYVETIFH 856

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV
Sbjct: 857  RKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQV 916

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+    P +  E+ + +V+E M K +     + V L  D     NW  A
Sbjct: 917  HDELNFSVPVKEKEIVEQVVIEEMEKAY----RMHVPLKADCGWGTNWLQA 963


>gi|374814633|ref|ZP_09718370.1| DNA polymerase I [Treponema primitia ZAS-1]
          Length = 975

 Score =  196 bits (497), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 143/446 (32%), Positives = 224/446 (50%), Gaps = 48/446 (10%)

Query: 679  SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALK 738
            S SL + R  ++P    ++AE +    K     LR  GV+L TE+        +  D  K
Sbjct: 569  SGSLGLFRDLEMPLLP-ILAEMEGLGIKIEPKVLRDFGVELSTEL------DQIQADTYK 621

Query: 739  TLARNISAEYDCVDGAHDLDDSGCTEETEYKGA---VASNNKIFATEQEAREACDAISA- 794
             +    +     +     L D   TE     G       +  +   E+ ARE  D + A 
Sbjct: 622  LVGHEFN-----LASPKQLQDVLFTERKLKPGKKTKTGYSTDVSVLEELARE--DPVPAK 674

Query: 795  LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKD 853
            +    ++  L S ++  L  ++++ K GR+H + +   T TGRLS+R PNLQN P  +++
Sbjct: 675  ILRHRTLAKLKSTYVDAL--ADIADKEGRLHTNFVQTGTATGRLSSREPNLQNIPIRDEE 732

Query: 854  RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
              +IR+AFIA PG  LI ADY Q+EL +LAHL+  ++++ AFK G D H+RTA  ++   
Sbjct: 733  GRRIREAFIAKPGCVLISADYSQIELVVLAHLSQDENLIAAFKGGKDVHARTAALIF--- 789

Query: 914  RNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVE 973
                          G D+      KD  + +RR AK +NF + YG +   L+ +  +S  
Sbjct: 790  --------------GIDE------KDVQSDQRRIAKTINFGVMYGMSAFRLSNELNISRT 829

Query: 974  EAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERA 1033
            EA   ++ ++     + ++ +   +++    +  T+LGR R  PAI S  ++++   ER 
Sbjct: 830  EAASFIEAYFKTYAGIRSFIDELIRKTEETGYASTILGRRRYIPAINSRNKTEKAGAERV 889

Query: 1034 AINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVE 1093
            A+NTP+QGSAAD+   AML + K    ++   KLLLQVHDE+ILE P   A  A A+V E
Sbjct: 890  AVNTPIQGSAADIVKTAMLNLDKRLTKEKSTAKLLLQVHDELILECPKADAPEAAALVKE 949

Query: 1094 CMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             M K       LR+ L V  +  + W
Sbjct: 950  VMEKAV----KLRIPLRVSVETGKRW 971


>gi|423713326|ref|ZP_17687586.1| DNA polymerase I [Bartonella vinsonii subsp. arupensis OK-94-513]
 gi|395423367|gb|EJF89562.1| DNA polymerase I [Bartonella vinsonii subsp. arupensis OK-94-513]
          Length = 968

 Score =  195 bits (496), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 119/316 (37%), Positives = 168/316 (53%), Gaps = 32/316 (10%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 680  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRAAFIA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+AN  ++ +AF  G D H+ TA  M+             
Sbjct: 732  PKGHLLLSADYSQIELRILAHIANITALKEAFAQGQDIHAITASQMFG------------ 779

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
                      VP+ +   +  RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 780  ----------VPI-EGMHSDVRRRAKAINFGIIYGISAFGLANQLGLSRQEASRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R +  V T+ GR   +P IK+ +   R   ERAAIN P+QGSA
Sbjct: 829  ERFPGIKDYMETTKTFARENGFVETIFGRRIHYPEIKAASLRVRAFNERAAINAPIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN 1103
            AD+   AM+++      ++L  K+LLQVHDE+I E P   +E   A+V E M        
Sbjct: 889  ADIIRRAMIQMEAALEKEKLSAKMLLQVHDELIFEVPENESEKTMAVVKEVMENATMPVL 948

Query: 1104 NLRVDLSVDAKCAQNW 1119
            +L V L V    AQNW
Sbjct: 949  SLSVPLEVKVMVAQNW 964



 Score = 47.8 bits (112), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 51/200 (25%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
           L    P  E+ ++ K+  N  +D  V++ +G+ +S F  DTM ++   D+   T      
Sbjct: 439 LALLKPILENQAVLKIGQNIKYDWLVMKQHGIVISSFD-DTMLLSYALDAGTLTHN---- 493

Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
                    M +  + + +  S    D  + GK                   KI++ A V
Sbjct: 494 ---------MDDLSERWLRHKSIAYKDLTYNGK-------------------KITSFAQV 525

Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQP 604
           +  Q         Y+A D+  TL L+K LK +L+             + M   Y+   +P
Sbjct: 526 DLKQAT------LYAAEDADVTLHLWKVLKPQLV------------ARGMTKIYERLDRP 567

Query: 605 FGEILVKMETEGMLVDREYL 624
             E+L +ME  G+L+DR+ L
Sbjct: 568 LIEVLARMEERGILIDRQVL 587


>gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
 gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 941

 Score =  195 bits (496), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 124/351 (35%), Positives = 180/351 (51%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     D I  + E   +  L+S +I  LP     ++ + GR+H S N   
Sbjct: 620  YVTSEEVLESLRNKHDVIGKILEYRGLKKLLSTYIDALP---QLINPRTGRIHTSFNQTV 676

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M
Sbjct: 677  TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNM 736

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y      V+                  +K+  A  RRKAK  
Sbjct: 737  IDAFLSGYDIHAATAAKIY-----KVD------------------IKEVTADMRRKAKTA 773

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    +V  + +   + +R   +V T+  
Sbjct: 774  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQVKAYMDKSIQVAREHGYVETIFH 833

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV
Sbjct: 834  RKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQV 893

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+    P +  E+ + +V+E M K +     + V L  D     NW  A
Sbjct: 894  HDELNFSVPVKEKEIVEQVVIEEMEKAY----RMHVPLKADCGWGTNWLQA 940


>gi|395792664|ref|ZP_10472088.1| DNA polymerase I [Bartonella vinsonii subsp. arupensis Pm136co]
 gi|395432221|gb|EJF98210.1| DNA polymerase I [Bartonella vinsonii subsp. arupensis Pm136co]
          Length = 968

 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/316 (37%), Positives = 168/316 (53%), Gaps = 32/316 (10%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 680  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRAAFIA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+AN  ++ +AF  G D H+ TA  M+             
Sbjct: 732  PKGHLLLSADYSQIELRILAHIANITALKEAFAQGQDIHAITASQMFG------------ 779

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
                      VP+ +   +  RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 780  ----------VPI-EGMHSDVRRRAKAINFGIIYGISAFGLANQLGLSRQEASRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R +  V T+ GR   +P IK+ +   R   ERAAIN P+QGSA
Sbjct: 829  ERFPGIKDYMETTKTFARENGFVETIFGRRIHYPEIKAASLRVRAFNERAAINAPIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN 1103
            AD+   AM+++      ++L  K+LLQVHDE+I E P   +E   A+V E M        
Sbjct: 889  ADIIRRAMIQMEAALEKEKLSAKMLLQVHDELIFEVPENESEKTMAVVKEVMENATMPVL 948

Query: 1104 NLRVDLSVDAKCAQNW 1119
            +L V L V    AQNW
Sbjct: 949  SLSVPLEVKVMVAQNW 964


>gi|357386727|ref|YP_004901451.1| DNA polymerase I [Pelagibacterium halotolerans B2]
 gi|351595364|gb|AEQ53701.1| DNA polymerase I [Pelagibacterium halotolerans B2]
          Length = 963

 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/309 (37%), Positives = 167/309 (54%), Gaps = 24/309 (7%)

Query: 815  SNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S ++ +  RVH S N  +  TGRLS+  PNLQN P   +D  KIR AFIA PGN LI AD
Sbjct: 677  SYINERTKRVHTSYNQASVATGRLSSNEPNLQNIPIRTEDGRKIRTAFIAAPGNLLISAD 736

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+A+  ++ DAF+ G D H+ TA  M+                       
Sbjct: 737  YSQIELRVLAHIADIDALKDAFEEGLDIHAMTASEMFG---------------------- 774

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
            VP+ +D     RR+AK +NF I YG +  GLA    ++  EA + +  ++     +  + 
Sbjct: 775  VPI-EDMDPMVRRRAKAINFGIIYGISAFGLANQLGIARSEAGEYIKTYFARFPGIQDYM 833

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
              +++  +   +V T+ GR   F  + +   S+R  IERA+IN P+QGSAAD+   AM+ 
Sbjct: 834  AEQRRIVKAQGYVSTIFGRKIPFENVNTKNPSERAFIERASINAPIQGSAADIIRRAMIR 893

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            + +    + +   +LLQVHDE+I E P++ AE A  I+   M         L V L VDA
Sbjct: 894  MERILTEENVPADMLLQVHDELIFEAPADKAEQAIPIIKRVMEGAAEPALRLSVPLQVDA 953

Query: 1114 KCAQNWYSA 1122
            K A+NW +A
Sbjct: 954  KAAENWEAA 962


>gi|427384796|ref|ZP_18881301.1| DNA polymerase I [Bacteroides oleiciplenus YIT 12058]
 gi|425728057|gb|EKU90916.1| DNA polymerase I [Bacteroides oleiciplenus YIT 12058]
          Length = 952

 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 178/351 (50%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-IN 831
            + T +E  E+     D I  + E   +  L+  ++  LPL    ++ + GR+H S N   
Sbjct: 631  YVTSEEVLESLRNKHDIIGKILEYRGLKKLLGTYVDALPLL---INPRTGRIHTSFNQAV 687

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M
Sbjct: 688  TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNM 747

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y      ++                  +KD  A  RRKAK  
Sbjct: 748  IDAFLSGYDIHAATAAKIY-----KID------------------IKDVTADMRRKAKTA 784

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    +V  + +   + +R   +V T+  
Sbjct: 785  NFGIIYGISIFGLAERMNVDRKEAKELIDGYFETYPQVREYMDKSIQVAREQGYVETIFH 844

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S   + R + ER AIN P+QGSAAD+   AM  I K  +   L  K++LQV
Sbjct: 845  RKRFLPDINSRNATVRGYAERNAINAPIQGSAADIIKVAMARIYKRFQAYNLKAKMILQV 904

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+    P    E  + IV+E M + +     + V L  D    +NW  A
Sbjct: 905  HDELNFSVPEAEKEFVQQIVIEEMERAY----RMHVPLRADCGWGKNWLQA 951


>gi|345888471|ref|ZP_08839555.1| hypothetical protein HMPREF0178_02329 [Bilophila sp. 4_1_30]
 gi|345040665|gb|EGW44901.1| hypothetical protein HMPREF0178_02329 [Bilophila sp. 4_1_30]
          Length = 874

 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/332 (36%), Positives = 177/332 (53%), Gaps = 26/332 (7%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            + AL E   ++ L S ++ PL    + G +GR+  + N + T TGRLS+  PNLQN P  
Sbjct: 567  VDALLEFRKLEKLRSTYLEPL--PRLMGGDGRIRTTFNQLATATGRLSSSNPNLQNIPVR 624

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
                 ++R  F A  G  LI ADY Q+ELR+LAHL+  +++L AF+ G D H+RTA  ++
Sbjct: 625  GALGRRMRACFTAPEGKKLISADYSQIELRVLAHLSRDETLLAAFREGADIHARTASLLF 684

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                               D PP  +  D    +RR AK +NF + YG  P  LA++ K+
Sbjct: 685  -------------------DAPPSEITPD----QRRNAKTINFGLIYGMGPQKLAQELKI 721

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
             + EAK  +  ++   Q +  + E  ++ +R   +V TL GR R  P I++ ++  R+  
Sbjct: 722  PLSEAKAFMARYFERLQGLKNFYENVEEMAREQGYVTTLAGRRRPLPDIQAESQQARSLA 781

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAI 1090
             R AINT +QGSAAD+   AML +  +  L+ L  KLLLQVHDE++LE P  +A+ A   
Sbjct: 782  RRQAINTLIQGSAADIIKLAMLAVHGDETLRALDAKLLLQVHDELLLEVPEAAAQEAGER 841

Query: 1091 VVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            V   M+    G   L V L  D   A+NW  A
Sbjct: 842  VAALMANVRPGGIVLDVPLKADWGAAENWGDA 873


>gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 951

 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/343 (35%), Positives = 173/343 (50%), Gaps = 33/343 (9%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSA 839
            Q  R   D I  + E   +  L+S +I  LP     ++ + GR+H S N   T TGRLS+
Sbjct: 638  QSYRSKHDIIGKILEYRGLKKLLSTYIDALP---QLINPRTGRIHTSFNQAVTATGRLSS 694

Query: 840  RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
              PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+DAF +G 
Sbjct: 695  SNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGH 754

Query: 900  DFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGK 959
            D H+ TA  +Y    N                       D  A  RRKAK  NF I YG 
Sbjct: 755  DIHAATAAKIYKIDIN-----------------------DVTADMRRKAKTANFGIIYGI 791

Query: 960  TPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAI 1019
            +  GLA    VS +EAK+ +D ++    +V  + +   + +R + +V T+  R R  P I
Sbjct: 792  SVFGLAERMGVSRQEAKELIDGYFETYPQVKEYMDKSIQVARENGYVETIFHRKRFLPDI 851

Query: 1020 KSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEG 1079
             S     R + ER AIN P+QGSAAD+   AM  I +  +   L  K++LQVHDE+    
Sbjct: 852  NSRNGVVRGYAERNAINAPIQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSV 911

Query: 1080 PSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            P    E+ + IV+E M + +    ++ V L  D     NW  A
Sbjct: 912  PEAEKELVQKIVIEEMEQAY----HMHVPLKADCGWGNNWLQA 950



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 125/318 (39%), Gaps = 77/318 (24%)

Query: 310 NDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVW-MLTNKYKHL 368
           N A EGTG     SEN N  +LE+L         +  ++D      +++  +LT++    
Sbjct: 335 NFAGEGTG----VSENSNLTRLEMLDV-------DYQLIDTEDKRAEIIQKLLTSE---- 379

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEF 428
           + + DTE    +     P+D  E++  S      +D  N    + V         ++NEF
Sbjct: 380 ILSIDTETTGTE-----PMD-AELVGMSF-----SDAENRAYYVPVPAEREEVLKIVNEF 428

Query: 429 APFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALT 488
            P FE+    KV  N  +D  +L+NYG++V G   DTM    +     R    Y      
Sbjct: 429 RPLFENEKSMKVGQNIKYDMIILQNYGVQVKGKLFDTMLAHYVLQPELRHNMDY------ 482

Query: 489 GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQ 548
                ++E    YQ               I + ++ G R     G   K     P E++ 
Sbjct: 483 -----LAEIYLHYQ--------------TIHIDELIGAR-----GKNQKNMRDLPPEDVY 518

Query: 549 REERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEI 608
           R        Y+  D+  TLKL   L+K+L E   +              + E   P   +
Sbjct: 519 R--------YACEDADVTLKLKNVLEKELKEQGAE------------HLFYEIEMPLVPV 558

Query: 609 LVKMETEGMLVDREYLSE 626
           LV +E+ G+L+D E L +
Sbjct: 559 LVNIESNGVLLDTEALKQ 576


>gi|317121267|ref|YP_004101270.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
 gi|315591247|gb|ADU50543.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
          Length = 1060

 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/350 (34%), Positives = 181/350 (51%), Gaps = 40/350 (11%)

Query: 779  FATEQEAREACDAISALCE-VCSIDSLISNFILPLQGSNVSG------KNGRVHCSLNIN 831
            ++T+ E  E   A   + E V    SL+      LQG+ V G       +GRVH +    
Sbjct: 734  YSTDAEVLETLAARHPIAELVLEYRSLVK-----LQGTYVDGLAEHIGPDGRVHTTFQQT 788

Query: 832  TE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKS 890
               TGRLS+ +PNLQN P  ++    +R+AF+A PG+ L+ ADY Q+ELR+LAH +  + 
Sbjct: 789  VAATGRLSSTQPNLQNIPIRDEPGRSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDEG 848

Query: 891  MLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKM 950
            +L+AF  G D H+RTA  ++      V   QV  E                  +RR AK 
Sbjct: 849  LLEAFARGQDVHARTASEIF-----GVPLEQVTPE------------------QRRVAKA 885

Query: 951  LNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLL 1010
            +NF +AYG+T  GLAR  ++   +A++ +D ++     V  + E   + +R    V TLL
Sbjct: 886  VNFGLAYGQTDYGLARALRIDRADARRFMDRYFERYPGVKRYMEETIRRARQHGEVTTLL 945

Query: 1011 GRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQ 1070
            GR R  P I+      R + ER AINTP+QG+AAD+   AM+ + +    + L  +++LQ
Sbjct: 946  GRRRPVPEIRHRVYHIRQNAERVAINTPIQGTAADIMKLAMIRVYRALAGEGLRARIVLQ 1005

Query: 1071 VHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
            VHDE+++E P +      A+    + +   G   L V L VD K   NWY
Sbjct: 1006 VHDELLVEAPEDEVPAVAAL----LRREMEGAFPLAVPLVVDVKAGTNWY 1051


>gi|389856247|ref|YP_006358490.1| DNA polymerase I [Streptococcus suis ST1]
 gi|353739965|gb|AER20972.1| DNA polymerase I [Streptococcus suis ST1]
          Length = 878

 Score =  195 bits (495), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 182/336 (54%), Gaps = 32/336 (9%)

Query: 791  AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
             +S + E   I  L S +++ LQ + +  ++G++H   +   T+TGRLS+  PNLQN P 
Sbjct: 572  VVSKILEYRQITKLQSTYVVGLQDAIL--EDGKIHTRYVQDLTQTGRLSSTDPNLQNIPV 629

Query: 850  -LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
             LE+ R  IR+AF+    NS+++A DY Q+ELR+LAH++  K +++AF+ G D H+ TAM
Sbjct: 630  RLEQGRL-IRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAM 688

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
             ++      +E          ED  P         ++RR AK +NF + YG +  GL+ +
Sbjct: 689  RVF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLSNN 726

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ +EAK  +D ++     +  + E   +E+R   +V T+  R R  P I S   + R
Sbjct: 727  LGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVR 786

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVA 1087
            N  ER AIN+P+QGSAAD+   AM+ + K      L  ++LLQVHDE++LE P    E  
Sbjct: 787  NFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETV 846

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            KA+V E M        +L V L  D      WY AK
Sbjct: 847  KAMVKETMESAI----SLSVPLIADENEGSTWYEAK 878


>gi|424665766|ref|ZP_18102802.1| DNA polymerase I [Bacteroides fragilis HMW 616]
 gi|404574019|gb|EKA78770.1| DNA polymerase I [Bacteroides fragilis HMW 616]
          Length = 935

 Score =  195 bits (495), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 180/351 (51%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     D I  + E   +  L+S +I  LP     ++ + GR+H S N   
Sbjct: 614  YVTSEEVLESLRNRHDVIGKILEYRGLKKLLSTYIDALP---QLINPRTGRIHTSFNQTV 670

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M
Sbjct: 671  TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNM 730

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y      ++                  +K+  A  RRKAK  
Sbjct: 731  IDAFLSGYDIHAATAAKIY-----KID------------------IKEVTADMRRKAKTA 767

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    +V  + +   + +R   +V T+  
Sbjct: 768  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQVKAYMDKSIQVAREHGYVETIFH 827

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV
Sbjct: 828  RKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQV 887

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+    P +  E+ + +V+E M K +     + V L  D     NW  A
Sbjct: 888  HDELNFSVPVKEKEIVEQVVIEEMEKAY----RMHVPLKADCGWGTNWLQA 934


>gi|374674227|dbj|BAL52118.1| DNA polymerase I [Lactococcus lactis subsp. lactis IO-1]
          Length = 884

 Score =  195 bits (495), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 184/345 (53%), Gaps = 35/345 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  + + I  +  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 566  AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 625

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P   ++  KIR+AF+    + L+ +DY Q+ELR+LAH++  + ++DAFK G
Sbjct: 626  SVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHG 685

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TAM ++      +E  +                 D  A++RR AK +NF + YG
Sbjct: 686  ADIHTSTAMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 723

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E+R    V T+  R R+ P 
Sbjct: 724  ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 783

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            I +   + R   ER AIN+P+QGSAAD+   AM+ + K    ++   KLLLQVHDE+IL+
Sbjct: 784  INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALSARDFKSKLLLQVHDEIILD 843

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E  +  KA+V + M +       L V L VD    + WY AK
Sbjct: 844  VPLEELDEIKALVKQTMEEAI----ELAVPLKVDENTGKTWYEAK 884


>gi|418037832|ref|ZP_12676194.1| DNA-directed DNA polymerase [Lactococcus lactis subsp. cremoris CNCM
            I-1631]
 gi|354694041|gb|EHE93743.1| DNA-directed DNA polymerase [Lactococcus lactis subsp. cremoris CNCM
            I-1631]
          Length = 884

 Score =  195 bits (495), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 184/345 (53%), Gaps = 35/345 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  + + I  +  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 566  AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 625

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P   ++  KIR+AF+    + L+ +DY Q+ELR+LAH++  + ++DAFK G
Sbjct: 626  SVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHG 685

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TAM ++      +E  +                 D  A++RR AK +NF + YG
Sbjct: 686  ADIHTSTAMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 723

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E+R    V T+  R R+ P 
Sbjct: 724  ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 783

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            I +   + R   ER AIN+P+QGSAAD+   AM+ + K    ++   KLLLQVHDE+IL+
Sbjct: 784  INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALSARDFKSKLLLQVHDEIILD 843

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E  +  KA+V + M +       L V L VD    + WY AK
Sbjct: 844  VPLEELDEIKALVKQTMEEAI----ELAVPLKVDENTGKTWYEAK 884


>gi|223932667|ref|ZP_03624666.1| DNA polymerase I [Streptococcus suis 89/1591]
 gi|302024099|ref|ZP_07249310.1| DNA polymerase I [Streptococcus suis 05HAS68]
 gi|386583689|ref|YP_006080092.1| DNA polymerase I [Streptococcus suis D9]
 gi|223898637|gb|EEF64999.1| DNA polymerase I [Streptococcus suis 89/1591]
 gi|353735835|gb|AER16844.1| DNA polymerase I [Streptococcus suis D9]
          Length = 878

 Score =  195 bits (495), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 182/336 (54%), Gaps = 32/336 (9%)

Query: 791  AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
             +S + E   I  L S +++ LQ + +  ++G++H   +   T+TGRLS+  PNLQN P 
Sbjct: 572  VVSKILEYRQITKLQSTYVVGLQDAIL--EDGKIHTRYVQDLTQTGRLSSTDPNLQNIPV 629

Query: 850  -LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
             LE+ R  IR+AF+    NS+++A DY Q+ELR+LAH++  K +++AF+ G D H+ TAM
Sbjct: 630  RLEQGRL-IRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAM 688

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
             ++      +E          ED  P         ++RR AK +NF + YG +  GL+ +
Sbjct: 689  RVF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLSNN 726

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ +EAK  +D ++     +  + E   +E+R   +V T+  R R  P I S   + R
Sbjct: 727  LGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVR 786

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVA 1087
            N  ER AIN+P+QGSAAD+   AM+ + K      L  ++LLQVHDE++LE P    E  
Sbjct: 787  NFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETV 846

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            KA+V E M        +L V L  D      WY AK
Sbjct: 847  KAMVKETMESAI----SLSVPLIADENEGSTWYEAK 878


>gi|330832426|ref|YP_004401251.1| DNA polymerase I [Streptococcus suis ST3]
 gi|329306649|gb|AEB81065.1| DNA polymerase I [Streptococcus suis ST3]
          Length = 878

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 182/336 (54%), Gaps = 32/336 (9%)

Query: 791  AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
             +S + E   I  L S +++ LQ + +  ++G++H   +   T+TGRLS+  PNLQN P 
Sbjct: 572  VVSKILEYRQITKLQSTYVVGLQDAIL--EDGKIHTRYVQDLTQTGRLSSTDPNLQNIPV 629

Query: 850  -LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
             LE+ R  IR+AF+    NS+++A DY Q+ELR+LAH++  K +++AF+ G D H+ TAM
Sbjct: 630  RLEQGRL-IRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAM 688

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
             ++      +E          ED  P         ++RR AK +NF + YG +  GL+ +
Sbjct: 689  RVF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLSNN 726

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ +EAK  +D ++     +  + E   +E+R   +V T+  R R  P I S   + R
Sbjct: 727  LGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVR 786

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVA 1087
            N  ER AIN+P+QGSAAD+   AM+ + K      L  ++LLQVHDE++LE P    E  
Sbjct: 787  NFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETV 846

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            KA+V E M        +L V L  D      WY AK
Sbjct: 847  KAMVKETMESAI----SLSVPLIADENEGSTWYEAK 878


>gi|317484592|ref|ZP_07943496.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
 gi|316924132|gb|EFV45314.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
          Length = 874

 Score =  194 bits (494), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/332 (36%), Positives = 177/332 (53%), Gaps = 26/332 (7%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            + AL E   ++ L S ++ PL    + G +GR+  + N + T TGRLS+  PNLQN P  
Sbjct: 567  VDALLEFRKLEKLRSTYLEPL--PRLMGGDGRIRTTFNQLATATGRLSSSNPNLQNIPVR 624

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
                 ++R  F A  G  LI ADY Q+ELR+LAHL+  +++L AF+ G D H+RTA  ++
Sbjct: 625  GALGRRMRACFTAPEGKKLISADYSQIELRVLAHLSRDETLLAAFREGADIHARTASLLF 684

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                               D PP  +  D    +RR AK +NF + YG  P  LA++ K+
Sbjct: 685  -------------------DAPPSEITPD----QRRNAKTINFGLIYGMGPQKLAQELKI 721

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
             + EAK  +  ++   Q +  + E  ++ +R   +V TL GR R  P I++ ++  R+  
Sbjct: 722  PLSEAKAFMARYFERLQGLKHFYENVEEMAREQGYVTTLAGRRRPLPDIQAESQQARSLA 781

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAI 1090
             R AINT +QGSAAD+   AML +  +  L+ L  KLLLQVHDE++LE P  +A+ A   
Sbjct: 782  RRQAINTLIQGSAADIIKLAMLAVHGDETLRTLDAKLLLQVHDELLLEVPEAAAQEAGER 841

Query: 1091 VVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            V   M+    G   L V L  D   A+NW  A
Sbjct: 842  VAALMANVRPGGIVLDVPLKADWGAAENWGDA 873


>gi|385831716|ref|YP_005869529.1| DNA polymerase I [Lactococcus lactis subsp. lactis CV56]
 gi|326407724|gb|ADZ64795.1| DNA polymerase I [Lactococcus lactis subsp. lactis CV56]
          Length = 877

 Score =  194 bits (494), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 184/345 (53%), Gaps = 35/345 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  + + I  +  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 559  AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 618

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P   ++  KIR+AF+    + L+ +DY Q+ELR+LAH++  + ++DAFK G
Sbjct: 619  SVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHG 678

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TAM ++      +E  +                 D  A++RR AK +NF + YG
Sbjct: 679  ADIHTSTAMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 716

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E+R    V T+  R R+ P 
Sbjct: 717  ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 776

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            I +   + R   ER AIN+P+QGSAAD+   AM+ + K    ++   KLLLQVHDE+IL+
Sbjct: 777  INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALSARDFKSKLLLQVHDEIILD 836

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E  +  KA+V + M +       L V L VD    + WY AK
Sbjct: 837  VPLEELDEIKALVKQTMEEAI----ELAVPLKVDENTGKTWYEAK 877


>gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
 gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
          Length = 968

 Score =  194 bits (494), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/319 (37%), Positives = 171/319 (53%), Gaps = 32/319 (10%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 680  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+A+ K++ +AF  G D H+ TA  M+         G  +
Sbjct: 732  PKGHVLLSADYSQIELRILAHIADIKALKEAFAKGHDIHAITASQMF---------GVAI 782

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
               H +               RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 783  EGMHSDI--------------RRRAKAINFGIIYGISAFGLANQLGISRQEAGRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R + +V T+ GR   +P IK+     R+  ERAAIN P+QGSA
Sbjct: 829  ERFPGIKDYMEKTKSFARENGYVETIFGRRIHYPEIKAKNVKIRSLNERAAINAPIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN 1103
            AD+   AM+++    + + L  K+LLQVHDE+I E P E ++   A+V + M        
Sbjct: 889  ADIIRRAMIQMEDALKEENLSAKMLLQVHDELIFEVPEEESKKTMAVVKDVMENATMPVL 948

Query: 1104 NLRVDLSVDAKCAQNWYSA 1122
            +L V L V    AQNW  A
Sbjct: 949  SLSVPLEVKVMTAQNWDEA 967



 Score = 42.7 bits (99), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 125/316 (39%), Gaps = 88/316 (27%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGP------EADFGNGKSCIWVDLLDGG---- 420
           A DTE   +D  Q       +++ FS+   P        +   GK     DLL GG    
Sbjct: 382 AFDTETTSLDPMQ------AKLVGFSLALQPGKAAYIPLEHFEGKE----DLLKGGRIAS 431

Query: 421 ---GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
               R  L    P  ED ++ K+  N  +D  V++ Y + +  F  DTM ++   D+   
Sbjct: 432 QIETRKALALLKPLLEDSAVLKIGQNIKYDWLVVKQYDIVIRSFD-DTMLLSYALDAG-- 488

Query: 478 TEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGK 537
                   ALT +   +SE    ++               I+ KD+    K        K
Sbjct: 489 --------ALTHNMDDLSERWLEHKP--------------IAYKDLTHNGK--------K 518

Query: 538 ISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDF 597
           I++ A V+  Q         Y+A D+  TL+L++ LK +L+             + M   
Sbjct: 519 ITSFAQVDLKQA------TLYAAEDADITLRLWQVLKPQLV------------ARGMTKI 560

Query: 598 YQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHCPDA 653
           Y+   +P  E+L +ME  G+LVDR+ L     E+ + A   +E    +          D 
Sbjct: 561 YERLDRPLVEVLARMEERGILVDRQILLRLSGELAQAALILEEEIYKQ---------ADE 611

Query: 654 KYMNVGSDTQLRQLLF 669
           K+ N+ S  QL  +LF
Sbjct: 612 KF-NLASPKQLGDILF 626


>gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 833

 Score =  194 bits (494), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 181/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 518  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 576

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 577  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 636

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 637  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 673

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 674  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 733

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 734  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLEEMGARMLLQVHDELVLE 791

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E AE    +  E M     G   L V L V+    ++W SAK
Sbjct: 792  APKERAEAVARLAKEVM----EGVYPLAVPLEVEVGIGEDWLSAK 832


>gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1]
 gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1]
          Length = 920

 Score =  194 bits (494), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 172/307 (56%), Gaps = 28/307 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+ + GR+H S +     TGRLS+  PNLQN P   +   KIRQAFIA PG +++ ADY 
Sbjct: 640  VNPRTGRIHTSYHQAVASTGRLSSSDPNLQNIPIRNESGRKIRQAFIAEPGFTMVAADYS 699

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL++ +S++DAF  G D H  TA                  E  G     VP
Sbjct: 700  QIELRIMAHLSDDESLIDAFARGLDIHRATAA-----------------EVMG-----VP 737

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            L +D  +  RR AK +NF + YG +  GLAR   +S E+A+  +D +++    VL + E 
Sbjct: 738  L-EDVTSDMRRSAKAVNFGLIYGMSAFGLARQLGISREQAQAYMDRYFHRYPGVLRYMED 796

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +K++    +V TL GR    P +++ ++ +R   ER AIN P+QGSAAD+   AM++I 
Sbjct: 797  IRKQAHDQGYVETLFGRRLYLPEVRAASKMRRQAAERVAINAPMQGSAADIIKRAMIDID 856

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
               R +    ++++QVHDE++ E P++    A    +E + K  +G  +L+V L V+A  
Sbjct: 857  TWLRTQPAKIRMIMQVHDELVFEVPNDVVPDA----IEQIQKRMSGAASLKVPLIVEAGT 912

Query: 1116 AQNWYSA 1122
              NW  A
Sbjct: 913  GTNWEQA 919


>gi|281492801|ref|YP_003354781.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
 gi|281376453|gb|ADA65939.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
          Length = 877

 Score =  194 bits (494), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 184/345 (53%), Gaps = 35/345 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  + + I  +  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 559  AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 618

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P   ++  KIR+AF+    + L+ +DY Q+ELR+LAH++  + ++DAFK G
Sbjct: 619  SVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHG 678

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TAM ++      +E  +                 D  A++RR AK +NF + YG
Sbjct: 679  ADIHTSTAMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 716

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E+R    V T+  R R+ P 
Sbjct: 717  ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 776

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            I +   + R   ER AIN+P+QGSAAD+   AM+ + K    ++   KLLLQVHDE+IL+
Sbjct: 777  INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALSARDFKSKLLLQVHDEIILD 836

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E  +  KA+V + M +       L V L VD    + WY AK
Sbjct: 837  VPLEELDEIKALVKQTMEEAI----ELAVPLKVDENTGKTWYEAK 877


>gi|423714748|ref|ZP_17688972.1| DNA polymerase I [Bartonella elizabethae F9251]
 gi|395430967|gb|EJF96995.1| DNA polymerase I [Bartonella elizabethae F9251]
          Length = 969

 Score =  194 bits (494), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/319 (37%), Positives = 170/319 (53%), Gaps = 32/319 (10%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 681  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTVEGRKIRTAFIA 732

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+A+ K++ +AF  G D H+ TA  M+           V 
Sbjct: 733  SKGHVLLSADYSQIELRILAHIADIKALKEAFAKGHDIHAITASEMF----------GVA 782

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
            +E    D              RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 783  IEGMPSDT-------------RRRAKAINFGIIYGISAFGLANQLGISRQEAGRYIQLYF 829

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R + +V T+ GR   +P IK+     R+  ERAAIN P+QGSA
Sbjct: 830  ERFPGIKNYMEKTKSFARENGYVETIFGRRIHYPEIKAENVKIRSLNERAAINAPIQGSA 889

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN 1103
            AD+   AM+++    + + L  K+LLQVHDE+I E P E ++   AIV   M        
Sbjct: 890  ADIIRRAMIQMEDALKEESLSAKMLLQVHDELIFEVPEEESKKTIAIVKNVMENATMPIL 949

Query: 1104 NLRVDLSVDAKCAQNWYSA 1122
            +L V L V    AQNW  A
Sbjct: 950  SLSVPLEVKVMTAQNWDEA 968



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 129/320 (40%), Gaps = 93/320 (29%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA-------DFGNGKSCIWVDLLDGG--- 420
           A DTE   +D  Q       +++ FS+   P          F  G+     DLL GG   
Sbjct: 382 AFDTETTSLDPMQ------AKLVGFSLALQPGKAAYIPLEHFDEGEE----DLLRGGRIA 431

Query: 421 ----GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSR 476
                R  L    P  ED ++ K+  N  +D  V++ Y + +  F  DTM ++       
Sbjct: 432 SQIETRKALAFLKPILEDSAVLKIGQNIKYDWLVMKQYDIVIRSFD-DTMLLS------- 483

Query: 477 RTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGS 534
                Y+L+A T    +          D+S     E ++G   I+ KD+    K      
Sbjct: 484 -----YALDAGTLTHNM---------DDLS-----ERWLGHKPIAYKDLTHNGK------ 518

Query: 535 AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSM 594
             KI++ A V+  Q         Y+A D+  TL+L++ LK +L+             + M
Sbjct: 519 --KITSFAQVDLRQAT------LYAAEDADITLRLWQVLKPQLV------------SRGM 558

Query: 595 FDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHC 650
              Y+   +P  E+L +ME  G+L+DR+ L     E+ + A   +E    +         
Sbjct: 559 TKIYERLDRPLVEVLARMEERGILIDRQILLRLSGELAQAALILEEEIYKQ--------- 609

Query: 651 PDAKYMNVGSDTQLRQLLFG 670
            D K+ N+ S  QL  +LFG
Sbjct: 610 ADEKF-NLASPKQLGDILFG 628


>gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct]
 gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct]
          Length = 829

 Score =  194 bits (494), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 181/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 514  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 572

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 573  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 632

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 633  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 669

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 670  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 729

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 730  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLEEMGARMLLQVHDELVLE 787

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E AE    +  E M     G   L V L V+    ++W SAK
Sbjct: 788  APKERAEAVARLAKEVM----EGVYPLAVPLEVEVGIGEDWLSAK 828


>gi|335040619|ref|ZP_08533744.1| DNA polymerase I [Caldalkalibacillus thermarum TA2.A1]
 gi|334179483|gb|EGL82123.1| DNA polymerase I [Caldalkalibacillus thermarum TA2.A1]
          Length = 881

 Score =  194 bits (494), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/347 (35%), Positives = 187/347 (53%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCSLNIN-TETGRL 837
            + D +  L     I S I ++  ++ LQ + + G       + G+VH +     T TGRL
Sbjct: 562  SADVLEKLAPQHEIVSKILDYRQLVKLQTTYIEGLLKEINEQTGKVHTTFQQTITATGRL 621

Query: 838  SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            S+  PNLQN P   ++  KIRQAF+    + +I+A DY Q+ELRILAHL+  + +++AF+
Sbjct: 622  SSTDPNLQNIPIRLEEGRKIRQAFVPSREDQVILAADYSQIELRILAHLSQDQGLVEAFR 681

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H++TAM+++   R+ V                 PL+       RR+AK +NF I 
Sbjct: 682  QGEDIHTKTAMDVFHVKRDEV----------------TPLM-------RRQAKAVNFGII 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+++  +S +EAK  ++ ++     V  + +   K++R D +V TLL R R  
Sbjct: 719  YGISDYGLSQNLNISRKEAKAFIERYFASYPGVKAYMDQIVKKAREDGYVTTLLHRRRYI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER A+NTP+QG+AAD+   AM+EI++  + ++L  KLLLQVHDE++
Sbjct: 779  PEINSCNFNLRSFAERTAMNTPIQGTAADIIKKAMVEIAERLKEEQLSSKLLLQVHDELV 838

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E P    E    +V + M         L V L VD      WY AK
Sbjct: 839  FEVPKSELETMMELVPQVMESTI----TLAVPLKVDLAYGPTWYDAK 881


>gi|118828|sp|P19821.1|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq
            polymerase 1
 gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
 gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
 gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus]
          Length = 832

 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 181/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 517  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 575

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 576  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 635

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 636  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 672

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 673  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 732

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 733  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLEEMGARMLLQVHDELVLE 790

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E AE    +  E M     G   L V L V+    ++W SAK
Sbjct: 791  APKERAEAVARLAKEVM----EGVYPLAVPLEVEVGIGEDWLSAK 831


>gi|395778900|ref|ZP_10459411.1| DNA polymerase I [Bartonella elizabethae Re6043vi]
 gi|395417075|gb|EJF83427.1| DNA polymerase I [Bartonella elizabethae Re6043vi]
          Length = 969

 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/319 (37%), Positives = 170/319 (53%), Gaps = 32/319 (10%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 681  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTVEGRKIRTAFIA 732

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+A+ K++ +AF  G D H+ TA  M+           V 
Sbjct: 733  SKGHVLLSADYSQIELRILAHIADIKALKEAFAKGHDIHAITASEMF----------GVA 782

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
            +E    D              RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 783  IEGMPSDT-------------RRRAKAINFGIIYGISAFGLANQLGISRQEAGRYIQLYF 829

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R + +V T+ GR   +P IK+     R+  ERAAIN P+QGSA
Sbjct: 830  ERFPGIKNYMEKTKSFARENGYVETIFGRRIHYPEIKAENVKIRSLNERAAINAPIQGSA 889

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN 1103
            AD+   AM+++    + + L  K+LLQVHDE+I E P E ++   AIV   M        
Sbjct: 890  ADIIRRAMIQMEDALKEESLSAKMLLQVHDELIFEVPEEESKKTIAIVKNVMENATMPIL 949

Query: 1104 NLRVDLSVDAKCAQNWYSA 1122
            +L V L V    AQNW  A
Sbjct: 950  SLSVPLEVKVMTAQNWDEA 968



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 129/320 (40%), Gaps = 93/320 (29%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA-------DFGNGKSCIWVDLLDGG--- 420
           A DTE   +D  Q       +++ FS+   P          F  G+     DLL GG   
Sbjct: 382 AFDTETTSLDPMQ------AKLVGFSLALQPGKAAYIPLEHFDEGEE----DLLRGGRIA 431

Query: 421 ----GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSR 476
                R  L    P  ED ++ K+  N  +D  V++ Y + +  F  DTM ++       
Sbjct: 432 SQIETRKALAFLKPILEDSAVLKIGQNIKYDWLVMKQYDIVIRSFD-DTMLLS------- 483

Query: 477 RTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGS 534
                Y+L+A T    +          D+S     E ++G   I+ KD+    K      
Sbjct: 484 -----YALDAGTLTHNM---------DDLS-----ERWLGHKPIAYKDLTHNGK------ 518

Query: 535 AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSM 594
             KI++ A V+  Q         Y+A D+  TL+L++ LK +L+             + M
Sbjct: 519 --KITSFAQVDLRQAT------LYAAEDADITLRLWQVLKPQLV------------SRGM 558

Query: 595 FDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHC 650
              Y+   +P  E+L +ME  G+L+DR+ L     E+ + A   +E    +         
Sbjct: 559 TKIYERLDRPLVEVLARMEERGILIDRQILLRLSGELAQAALILEEEIYKQ--------- 609

Query: 651 PDAKYMNVGSDTQLRQLLFG 670
            D K+ N+ S  QL  +LFG
Sbjct: 610 ADEKF-NLASPKQLGDILFG 628


>gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus]
          Length = 832

 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 181/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 517  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 575

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 576  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 635

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 636  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 672

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 673  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 732

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 733  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLEEMGARMLLQVHDELVLE 790

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E AE    +  E M     G   L V L V+    ++W SAK
Sbjct: 791  APKERAEAVARLAKEVM----EGVYPLAVPLEVEVGIGEDWLSAK 831


>gi|395789048|ref|ZP_10468578.1| DNA polymerase I [Bartonella taylorii 8TBB]
 gi|395431182|gb|EJF97209.1| DNA polymerase I [Bartonella taylorii 8TBB]
          Length = 968

 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/316 (37%), Positives = 169/316 (53%), Gaps = 32/316 (10%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 680  LPSYILP--------KTGRVHTNYSLATTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+A+  ++  AF  G D H+ TA  M+          +V 
Sbjct: 732  PKGHVLLSADYSQIELRILAHIADITALKKAFSQGQDIHAITASQMF----------EVP 781

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
            +E    D              RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 782  IEGMHSDI-------------RRRAKAINFGIIYGISAFGLANQLGLSRQEAGRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K   R + +V T+ GR   +P IK+     R+  ERAAIN P+QGSA
Sbjct: 829  ERFPGIKDYMETTKTFVRQNGYVETIFGRRIHYPEIKAANLQVRSFNERAAINAPIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN 1103
            AD+   AM+++ +    ++L  K+LLQVHDE+I E P + +E   A+V + M        
Sbjct: 889  ADIIRRAMIQMGEALEKEKLSAKMLLQVHDELIFEVPEDESEKTMAVVKKVMENATMPVF 948

Query: 1104 NLRVDLSVDAKCAQNW 1119
            +L V L V    AQNW
Sbjct: 949  SLSVPLEVKVMVAQNW 964


>gi|164687872|ref|ZP_02211900.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM 16795]
 gi|164603147|gb|EDQ96612.1| DNA-directed DNA polymerase [Clostridium bartlettii DSM 16795]
          Length = 882

 Score =  194 bits (493), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/356 (32%), Positives = 186/356 (52%), Gaps = 32/356 (8%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++N ++    ++  E  D I+   ++  ++S     +L +    ++ K GR+H S 
Sbjct: 558  KTGYSTNAEVLEKLRDKHEIIDKITEYRQIVKLNSTYVEGLLKI----INPKTGRIHSSF 613

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGR+S+  PN+QN P   +    IR+ F+A     L+ ADY Q+ELR+LAH++ 
Sbjct: 614  NQTITTTGRISSTEPNMQNIPVKTEMGRDIRKVFVADENCKLVDADYSQVELRVLAHMSG 673

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
             ++M+DAFK G D HS+TA  ++      V+                  +KD  + +R +
Sbjct: 674  DENMIDAFKHGEDIHSKTASQIFD-----VD------------------IKDVTSKQRIE 710

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF I YGKT  GL++D  + V  AK  +D ++N+  ++  + +   + +    +  
Sbjct: 711  AKAINFGIIYGKTDFGLSQDLNIPVATAKAYIDSYFNKYPKIKEFMDEAVESATETGYAT 770

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T+L R R  P IK+     RN  +R A+N P+QGSAAD+   AM+ +    +   +  KL
Sbjct: 771  TILNRRRYIPEIKASNFIVRNQGKRFAMNAPIQGSAADIIKVAMVNVYNKLKENNMKSKL 830

Query: 1068 LLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +LQVHDE+I+E   E  E+A+ IV E M        ++ V L VD     +WY  K
Sbjct: 831  ILQVHDELIVEAVDEELEMAEKIVREEMENA----QSMDVKLDVDLNTGDSWYETK 882


>gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
 gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
          Length = 883

 Score =  194 bits (493), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/310 (38%), Positives = 171/310 (55%), Gaps = 31/310 (10%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVP-GNSLIVADY 874
            V  + GR+H + +   T TGRLS+  PNLQN P   +   KIR+ FI    GN ++ ADY
Sbjct: 600  VDPQTGRLHSTFHQTVTATGRLSSAEPNLQNIPIRLETGRKIRKVFIPRQRGNLILTADY 659

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++  +S LDAF+ G D H+RTA  ++                       V
Sbjct: 660  SQIELRVLAHMSQDESFLDAFRQGQDIHTRTASEVFG----------------------V 697

Query: 935  PLLKDAFASERR-KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
            P+  D   SE R +AK +NF I YG +  GLARD KVS +EA+  +D ++     V  + 
Sbjct: 698  PM--DQVTSEMRSRAKAVNFGIVYGISDFGLARDLKVSRKEAQGYIDHYFARCPGVRQYI 755

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            +   KE++   +V+TLL R R  P + S   + RN  ERAA+NTP+QG+AAD+   AM++
Sbjct: 756  DRVIKEAKETGYVNTLLNRRRYLPELFSKNFNIRNFGERAAMNTPIQGTAADIIKLAMVK 815

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            IS+  + + L  +++LQVHDE+I + P    E    +V + M         L V L VD 
Sbjct: 816  ISQQLKEQNLSSQMVLQVHDELIFDAPENEIESLIMLVRQSMENAL----QLDVPLVVDI 871

Query: 1114 KCAQNWYSAK 1123
            K   NWY AK
Sbjct: 872  KLGPNWYEAK 881


>gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna Polymerase
            I From Thermus Aquaticus
          Length = 538

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 181/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 223  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 281

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 282  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 341

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 342  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 378

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 379  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 438

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 439  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLEEMGARMLLQVHDELVLE 496

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E AE    +  E M     G   L V L V+    ++W SAK
Sbjct: 497  APKERAEAVARLAKEVM----EGVYPLAVPLEVEVGIGEDWLSAK 537


>gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
 gi|156861999|gb|EDO55430.1| DNA-directed DNA polymerase [Bacteroides uniformis ATCC 8492]
          Length = 958

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/343 (35%), Positives = 172/343 (50%), Gaps = 33/343 (9%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSA 839
            Q  R   D I  + E   +  L+S +I  LP     ++ + GR+H S N   T TGRLS+
Sbjct: 645  QSYRSKHDIIGKILEYRGLKKLLSTYIDALP---QLINPRTGRIHTSFNQAVTATGRLSS 701

Query: 840  RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
              PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+DAF +G 
Sbjct: 702  SNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGH 761

Query: 900  DFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGK 959
            D H+ TA  +Y    N                       D  A  RRKAK  NF I YG 
Sbjct: 762  DIHAATAAKIYKIDIN-----------------------DVTADMRRKAKTANFGIIYGI 798

Query: 960  TPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAI 1019
            +  GLA    VS +EAK+ +D ++    +V  + +   + +R + +V T+  R R  P I
Sbjct: 799  SVFGLAERMGVSRQEAKELIDGYFETYPQVKEYMDKSIQVARENGYVETIFHRKRFLPDI 858

Query: 1020 KSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEG 1079
             S     R + ER AIN P+QGSAAD+   AM  I +  +   L  K++LQVHDE+    
Sbjct: 859  NSRNGVVRGYAERNAINAPIQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSV 918

Query: 1080 PSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            P    E+ + IV+E M + +     + V L  D     NW  A
Sbjct: 919  PEAEKELVQKIVIEEMEQAY----RMYVPLKADCGWGNNWLQA 957



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 125/318 (39%), Gaps = 77/318 (24%)

Query: 310 NDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVW-MLTNKYKHL 368
           N A EGTG     SEN N  +LE+L         +  ++D      +++  +LT++    
Sbjct: 342 NFAGEGTG----VSENSNLTRLEMLDI-------DYQLIDTEDKRAEIIQKLLTSE---- 386

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEF 428
           + + DTE    +     P+D  E++  S      +D  N    + V         ++NEF
Sbjct: 387 ILSIDTETTGTE-----PMD-AELVGMSF-----SDAENRAYYVPVPAEREEVLKIVNEF 435

Query: 429 APFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALT 488
            P FE+    KV  N  +D  +L+NYG++V G   DTM    +     R    Y      
Sbjct: 436 RPLFENEKSMKVGQNIKYDMIILQNYGVQVKGKLFDTMLAHYVLQPELRHNMDY------ 489

Query: 489 GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQ 548
                ++E    YQ               I + ++ G R     G   K     P E++ 
Sbjct: 490 -----LAEIYLHYQ--------------TIHIDELIGAR-----GKNQKNMRDLPPEDVY 525

Query: 549 REERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEI 608
           R        Y+  D+  TLKL   L+K+L E   +              + E   P   +
Sbjct: 526 R--------YACEDADVTLKLKNVLEKELKEQGAE------------HLFYEIEMPLVPV 565

Query: 609 LVKMETEGMLVDREYLSE 626
           LV +E+ G+L+D E L +
Sbjct: 566 LVNIESNGVLLDTEALKQ 583


>gi|289450265|ref|YP_003475168.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
            UPII9-5]
 gi|289184812|gb|ADC91237.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
            UPII9-5]
          Length = 922

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/325 (36%), Positives = 178/325 (54%), Gaps = 32/325 (9%)

Query: 801  IDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQ 859
            +  L+S FI+ L        + R+H + +   T+TGRLS+  PNLQN PA  ++  +IR 
Sbjct: 627  LSKLLSTFIVGLH--KYIAADHRIHTTFHQTLTQTGRLSSSDPNLQNIPARTEEGRRIRA 684

Query: 860  AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
            AFIA PG  LI ADY Q+ELR+LAHL+   +ML AF A  D H+ TA  ++ H+      
Sbjct: 685  AFIAAPGCILIDADYSQIELRLLAHLSGDTAMLKAFAAKEDIHALTAARVF-HMD----- 738

Query: 920  GQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTV 979
                         PV    D  +  RR  K +NFSI YG +   LA+D  +SV EAK  +
Sbjct: 739  -------------PV----DVTSEHRRVGKTINFSIVYGISAFSLAQDLHISVAEAKNYI 781

Query: 980  DLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPV 1039
              +Y    ++  +     + ++ID +V T+  R R  P +KS   ++R   ER A+NTP+
Sbjct: 782  AEYYATYPQIKAYLNDLVERAKIDGYVETMFKRRRYIPELKSKNYNRRLFGERVAMNTPI 841

Query: 1040 QGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPS-ESAEVAKAIVVECMSKP 1098
            QG+AAD+   AM+ +++  R K+L   ++LQ+HDE++LE P  E AEVA     E +   
Sbjct: 842  QGTAADIMRLAMVNLARKLREKKLKSHMILQIHDELVLEVPEPEFAEVA-----ELLRNE 896

Query: 1099 FNGKNNLRVDLSVDAKCAQNWYSAK 1123
                 +L+V L V+ +  +NW  AK
Sbjct: 897  MERVIDLKVSLPVELEYGKNWLEAK 921


>gi|6730045|pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp
 gi|157831628|pdb|1KTQ|A Chain A, Dna Polymerase
          Length = 543

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 181/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 228  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 286

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 287  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 346

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 347  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 383

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 384  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 443

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 444  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLEEMGARMLLQVHDELVLE 501

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E AE    +  E M     G   L V L V+    ++W SAK
Sbjct: 502  APKERAEAVARLAKEVM----EGVYPLAVPLEVEVGIGEDWLSAK 542


>gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup]
 gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup]
          Length = 969

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/309 (37%), Positives = 167/309 (54%), Gaps = 24/309 (7%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S +  K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA  G+ L+ AD
Sbjct: 683  SYIFSKTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIAPKGHVLLSAD 742

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELRILAH+A+ K++ +AF  G D H+ TA  M+         G  +   H +    
Sbjct: 743  YSQIELRILAHIADIKALKEAFAKGHDIHAITASQMF---------GVAIEGMHSDI--- 790

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       RR+AK +NF I YG +  GLA    +S +EA + + L++     +  + 
Sbjct: 791  -----------RRRAKAINFGIIYGISAFGLANQLGISRQEAGRYIQLYFERFPGIKDYM 839

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K  +R + +V T+ GR   +P IK+     R+  ERAAIN P+QGSAAD+   AM++
Sbjct: 840  EKTKIFARENGYVETIFGRRIHYPEIKAKNVKIRSLNERAAINAPIQGSAADIIRRAMIQ 899

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            +    + ++L  K+LLQVHDE+I E P E ++   A+V   M        +L V L V  
Sbjct: 900  MENALKEEKLSAKMLLQVHDELIFEVPEEESKKTMAVVKNVMENATMPILSLSVPLEVKV 959

Query: 1114 KCAQNWYSA 1122
              AQNW  A
Sbjct: 960  MTAQNWDEA 968



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 155/386 (40%), Gaps = 105/386 (27%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA-------DFGNGKSCIWVDLLDGG--- 420
           A +TE   +D  Q       +++ FS+   PE         F  G+     DLL GG   
Sbjct: 382 AFNTETTSLDPMQ------AKLVGFSLALQPEKAAYIPLEHFDEGEE----DLLRGGHIA 431

Query: 421 ----GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSR 476
                R  L    P  ED S+ K+  N  +D  V++ Y + +S F  DTM ++  +D+  
Sbjct: 432 SQIETRKALALLKPILEDSSVLKIGQNIKYDWLVMKQYDIIISSFD-DTMLLSYAFDAG- 489

Query: 477 RTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAG 536
                     LT +   +SE    ++               IS KD+    K        
Sbjct: 490 ---------ILTHNMDDLSERWLKHKP--------------ISYKDLTHNGK-------- 518

Query: 537 KISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFD 596
           KI++ A V+  Q         Y+A  +  TL+L++ LK +L+             + M  
Sbjct: 519 KITSFAQVDLKQAT------LYAAERADITLRLWQVLKPQLV------------ARGMTK 560

Query: 597 FYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHCPD 652
            Y+   +P  E+L +ME  G+L+DR+ L     E+ + A   +E    +          D
Sbjct: 561 IYERLDRPLVEVLARMEERGILIDRQILLRLSGELAQAALILEEEIYKQ---------AD 611

Query: 653 AKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSK- 706
            K+ N+ S  QL  +LFG     G   +K    S   + +      E + AEG   P K 
Sbjct: 612 EKF-NLASPKQLGDILFGKMGLSGGAKTKGGQWSTSAQTL------EELAAEGHVLPRKI 664

Query: 707 --FRNIT-LRSIGVD-LPTEMYTATG 728
             +R +  L+S   D LP+ +++ TG
Sbjct: 665 IEWRQLAKLKSTYTDALPSYIFSKTG 690


>gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment
            Of Dna Polymerase I From Thermus Aquaticus
 gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment
            Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 181/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 225  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 283

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 284  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 343

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 344  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 380

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 381  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 440

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 441  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLEEMGARMLLQVHDELVLE 498

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E AE    +  E M     G   L V L V+    ++W SAK
Sbjct: 499  APKERAEAVARLAKEVM----EGVYPLAVPLEVEVGIGEDWLSAK 539


>gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I
            From T. Aquaticus Bound To A PrimerTEMPLATE DNA
          Length = 539

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 181/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 224  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 282

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 283  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 342

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 343  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 379

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 380  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 439

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 440  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLEEMGARMLLQVHDELVLE 497

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E AE    +  E M     G   L V L V+    ++W SAK
Sbjct: 498  APKERAEAVARLAKEVM----EGVYPLAVPLEVEVGIGEDWLSAK 538


>gi|404492180|ref|YP_006716286.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
          Length = 891

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 114/303 (37%), Positives = 167/303 (55%), Gaps = 28/303 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GR+H S N   T TGRLS+  PNLQN P   ++  +IR+AF+   GN L+ ADY Q+EL
Sbjct: 615  TGRIHTSFNQAVTATGRLSSSDPNLQNIPIRTEEGRRIREAFVPAEGNLLLAADYSQVEL 674

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RILAH+A+  ++ ++F  G D H+RTA  ++           V LE    +         
Sbjct: 675  RILAHMADEPALKESFAHGEDIHARTASEIF----------GVFLELVTPEM-------- 716

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RR+AK +NF + YG +  GLA+   ++ +EA+  +D ++    +VL + EA+K E
Sbjct: 717  -----RRQAKTINFGVLYGMSAFGLAKSLGIARKEAQTYIDNYFARYPKVLEFMEAKKAE 771

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +R   +V TLLGR    P I S   + R + ER AIN P+QGSAAD+   AML I +  +
Sbjct: 772  AREKQYVTTLLGRRCAVPEIASKNGAVRGYAERNAINYPIQGSAADIIKVAMLRIHERLK 831

Query: 1060 LKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             ++L  K++LQVHDE++ + P+      + +V E M   F     L V L VD    +NW
Sbjct: 832  AEKLETKMVLQVHDELVFDMPAAEQAAVENLVREQMEHAF----ELDVPLLVDMGVGRNW 887

Query: 1120 YSA 1122
              A
Sbjct: 888  REA 890


>gi|6730032|pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The Large
            Fragment Of Dna Polymerase I From Thermus Aquaticus
 gi|157831580|pdb|1JXE|A Chain A, Stoffel Fragment Of Taq Dna Polymerase I
 gi|295789478|pdb|3LWL|A Chain A, Structure Of Klenow Fragment Of Taq Polymerase In Complex Wi
            Abasic Site
 gi|295789481|pdb|3LWM|A Chain A, Structure Of The Large Fragment Of Thermus Aquaticus Dna Pol
            In Complex With A Blunt-Ended Dna And Ddatp
 gi|300193253|pdb|3M8R|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In A Closed Ternary Complex With
            Trapped 4'- Ethylated Dttp
 gi|300193256|pdb|3M8S|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In A Closed Ternary Complex With
            Trapped 4'- Methylated Dttp
 gi|315113724|pdb|3OJS|A Chain A, Snapshots Of The Large Fragment Of Dna Polymerase I From
            Thermus Aquaticus Processing C5 Modified Thymidines
 gi|315113727|pdb|3OJU|A Chain A, Snapshot Of The Large Fragment Of Dna Polymerase I From
            Thermus Aquaticus Processing C5 Modified Thymidies
 gi|375332397|pdb|3RR7|A Chain A, Binary Structure Of The Large Fragment Of Taq Dna Polymerase
            Bound To An Abasic Site
 gi|375332400|pdb|3RR8|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
            Polymerase Bound To An Abasic Site And A Ddgtp
 gi|375332403|pdb|3RRG|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
            Polymerase Bound To An Abasic Site And A Ddgtp
 gi|375332406|pdb|3RRH|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
            Polymerase Bound To An Abasic Site And A Ddttp
 gi|375332444|pdb|3T3F|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
            Polymerase Bound To An Abasic Site And Dnitp
 gi|387766300|pdb|4DF4|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In A Closed Ternary Complex With
            7-(N-(10- Hydroxydecanoyl)-Aminopentinyl)-7-Deaza-2 -Datp
 gi|387766303|pdb|4DF8|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In A Closed Ternary Complex With
            Aminopentinyl-7- Deaza-2-Datp
 gi|387766306|pdb|4DFJ|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In A Closed Ternary Complex With
            5-(Aminopentinyl)- Dttp
 gi|387766309|pdb|4DFK|A Chain A, Large Fragment Of Dna Polymerase I From Thermus Aquaticus In
            A Closed Ternary Complex With
            5-(N-(10-Hydroxydecanoyl)-Aminopentinyl)-2-Dutp
 gi|387766312|pdb|4DFM|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In Ternary Complex With
            5-(Aminopentinyl)-2-Dctp
 gi|387766315|pdb|4DFP|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aqauticus In A Ternary Complex With
            7-(Aminopentinyl)-7- Deaza-Dgtp
 gi|388603902|pdb|3RTV|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In A Closed Ternary Complex With
            Natural PrimerTEMPLATE DNA
 gi|390136217|pdb|3SV3|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In A Closed Ternary Complex With
            The Artificial Base Pair Dnam-D5sicstp
 gi|390136220|pdb|3SV4|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In An Open Binary Complex With Dt
            As Templating Nucleobase
 gi|390136223|pdb|3SYZ|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In An Open Binary Complex With
            Dnam As Templating Nucleobase
 gi|390136226|pdb|3SZ2|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In An Open Binary Complex With Dg
            As Templating Nucleobase
 gi|428698144|pdb|4DLG|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
            Polymerase
          Length = 540

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 181/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 225  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 283

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 284  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 343

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 344  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 380

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 381  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 440

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 441  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLEEMGARMLLQVHDELVLE 498

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E AE    +  E M     G   L V L V+    ++W SAK
Sbjct: 499  APKERAEAVARLAKEVM----EGVYPLAVPLEVEVGIGEDWLSAK 539


>gi|5822373|pdb|1QTM|A Chain A, Ddttp-trapped Closed Ternary Complex Of The Large Fragment
            Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score =  193 bits (491), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 181/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 225  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 283

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 284  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 343

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 344  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 380

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 381  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 440

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 441  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLEEMGARMLLQVHDELVLE 498

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E AE    +  E M     G   L V L V+    ++W SAK
Sbjct: 499  APKERAEAVARLAKEVM----EGVYPLAVPLEVEVGIGEDWLSAK 539


>gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1]
          Length = 832

 Score =  193 bits (491), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 180/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 517  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 575

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 576  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 635

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 636  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 672

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  +  ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 673  MSAHRLSQELAIPYEEAQAFIGRYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 732

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 733  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLEEMGARMLLQVHDELVLE 790

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E AE    +  E M     G   L V L V+    ++W SAK
Sbjct: 791  APKERAEAVARLAKEVM----EGVYPLAVPLEVEVGIGEDWLSAK 831


>gi|417092589|ref|ZP_11957205.1| DNA polymerase I [Streptococcus suis R61]
 gi|353532268|gb|EHC01940.1| DNA polymerase I [Streptococcus suis R61]
          Length = 878

 Score =  193 bits (491), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 183/336 (54%), Gaps = 32/336 (9%)

Query: 791  AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
             +S + E   I  L S +++ LQ + +  ++G++H   +   T+TGRLS+  PNLQN P 
Sbjct: 572  VVSKILEYRQITKLQSTYVVGLQDAIL--EDGKIHTRYVQDLTQTGRLSSTDPNLQNIPV 629

Query: 850  -LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
             LE+ R  IR+AF+    +S+++A DY Q+ELR+LAH++  + +++AF+ G D H+ TAM
Sbjct: 630  RLEQGRL-IRKAFVPSLEDSVLLASDYSQIELRVLAHISQDQHLIEAFQQGADIHTSTAM 688

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
             ++      +E          ED  P         ++RR AK +NF + YG +  GL+ +
Sbjct: 689  RVF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLSNN 726

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ +EAK  +D ++     +  + E   +E+R   +V T+  R R  P I S   + R
Sbjct: 727  LGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVR 786

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVA 1087
            N  ER AIN+P+QGSAAD+   AM+ + K      L  ++LLQVHDE++LE P    E  
Sbjct: 787  NFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETV 846

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            KA+V E M        +L V L VD      WY AK
Sbjct: 847  KAMVKETMESAI----SLSVPLIVDENEGPTWYEAK 878


>gi|451941315|ref|YP_007461952.1| DNA polymerase I [Bartonella vinsonii subsp. berkhoffii str. Winnie]
 gi|451900702|gb|AGF75164.1| DNA polymerase I [Bartonella vinsonii subsp. berkhoffii str. Winnie]
          Length = 968

 Score =  193 bits (491), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/319 (37%), Positives = 168/319 (52%), Gaps = 32/319 (10%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GR+H + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 680  LPSYILP--------KTGRIHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRAAFIA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+AN  ++ +AF  G D H+ TA  M+         G  +
Sbjct: 732  PKGHLLLSADYSQIELRILAHIANITALKEAFAQGQDIHAITASQMF---------GVPI 782

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
             E H +               RR+AK +NF I YG +  GLA     S +EA + + L++
Sbjct: 783  EEMHSD--------------VRRRAKAINFGIIYGISAFGLANQLGFSRQEASRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R +  V T+ GR   +P IK+     R   ERAAIN P+QGSA
Sbjct: 829  ERFPGIKDYMETTKTFARQNGFVETIFGRRIHYPEIKASNPQVRAFNERAAINAPIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN 1103
            AD+   AM+++    + ++L  K+LLQVHDE+I E P   +E   A+V + M        
Sbjct: 889  ADIIRRAMIQMEDALKKEKLLAKMLLQVHDELIFEIPESESEKTMAVVKKVMENATMPVL 948

Query: 1104 NLRVDLSVDAKCAQNWYSA 1122
            +L V L V    AQNW  A
Sbjct: 949  SLSVPLEVKVMVAQNWGEA 967



 Score = 49.3 bits (116), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 57/240 (23%)

Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
           P  E+ +I K+  N  +D  V++ +G+ +S F  DTM  +   D+   T           
Sbjct: 444 PILENQAILKIGQNIKYDWLVMKQHGIVISSFD-DTMLFSYALDAGTLTH---------- 492

Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR 549
                              N D+  +  +  K I   + L  +G   KI++ A V+ LQ+
Sbjct: 493 -------------------NMDDLSVRWLGHKPI-AYKDLTHNGK--KITSFAQVD-LQQ 529

Query: 550 EERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEIL 609
                   Y+A D+  TL+L++ LK +L+             + M   Y+ + +P  E+L
Sbjct: 530 ATL-----YAAEDADVTLRLWQVLKPQLV------------AQGMTKIYERFDRPLIEVL 572

Query: 610 VKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
            +ME  G+L+DR+ L       R  +E A   F      +    +  N+ S  QL  +LF
Sbjct: 573 ARMEERGILIDRQIL------LRLSEELAQAAFILEEEIYQLAGEKFNLASPKQLGDILF 626


>gi|317129905|ref|YP_004096187.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
 gi|315474853|gb|ADU31456.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
          Length = 874

 Score =  193 bits (490), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 115/309 (37%), Positives = 177/309 (57%), Gaps = 29/309 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADY 874
            +  K+G++H   N   T+TGRLS+  PNLQN P   ++  KIR+AF+    N++I  ADY
Sbjct: 593  IHQKSGKIHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRRAFVPERENAVIFAADY 652

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++N +++ +AFK   D H++TAM+++ H+ +A E   ++           
Sbjct: 653  SQIELRVLAHISNDENLTNAFKENMDVHTKTAMDVF-HV-SADEVTSLM----------- 699

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                      RR AK +NF I YG +  GL+++  ++ +EAKK +D +++    V  + E
Sbjct: 700  ----------RRTAKAVNFGIVYGISDYGLSQNLGITRKEAKKFIDRYFDSYPGVKEYME 749

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            +  +E+R++ +V T+L R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 750  SIVEEARVNGYVTTMLHRRRYLPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMVKM 809

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
             +  + K L   LLLQVHDE+I E   E  E  K +V + M        NL V L VD  
Sbjct: 810  EEEMKEKGLKSTLLLQVHDELIFEVVQEEIETMKELVPKVMENAV----NLAVPLKVDFS 865

Query: 1115 CAQNWYSAK 1123
                WY AK
Sbjct: 866  FGDTWYDAK 874


>gi|15674124|ref|NP_268299.1| DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
 gi|18202780|sp|Q9CDS1.1|DPO1_LACLA RecName: Full=DNA polymerase I; Short=POL I
 gi|12725200|gb|AAK06240.1|AE006442_7 DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
          Length = 877

 Score =  193 bits (490), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 183/345 (53%), Gaps = 35/345 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  + + I  +  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 559  AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 618

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P   ++  KIR+AF+    + L+ +DY Q+ELR+LAH++  + ++DAFK G
Sbjct: 619  SVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHG 678

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TAM ++      +E  +                 D  A++RR AK +NF + YG
Sbjct: 679  ADIHTSTAMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 716

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E+R    V T+  R R+ P 
Sbjct: 717  ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 776

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            I +   + R   ER AIN+P+QGSAAD+   AM+ + K    ++   KLLLQVHDE+IL+
Sbjct: 777  INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALSARDFKSKLLLQVHDEIILD 836

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E  +  K +V + M +       L V L VD    + WY AK
Sbjct: 837  VPLEELDEIKVLVKQTMEEAI----ELAVPLKVDENTGKTWYEAK 877


>gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
 gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
          Length = 929

 Score =  193 bits (490), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 119/311 (38%), Positives = 168/311 (54%), Gaps = 32/311 (10%)

Query: 810  LPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    ++ KNGR+H S L   T TGRLS+R PNLQN P  ++   +IR AF AVPG  
Sbjct: 646  LPL----LADKNGRIHTSFLQTGTATGRLSSRDPNLQNIPVRDESGRRIRSAFTAVPGTV 701

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            LI ADY Q+EL +LAHL+  K++  AF  G D H  TA  +Y      +   QV      
Sbjct: 702  LISADYSQIELVVLAHLSGDKNLCSAFINGIDVHKSTAALIY-----GISPEQV------ 750

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
              KP           +RR AK +NF + YG +   LA +  +S  EAK  +D +++   +
Sbjct: 751  --KP----------EQRRFAKTVNFGVMYGMSAFRLANELNISRTEAKNFIDQYFSTYSD 798

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            V  + +  K+ +R + +V T+ GR R  P IKS ++      ER AINTP+QGSAAD+  
Sbjct: 799  VKKFLDETKRMARENGYVETITGRRRYIPEIKSSSKIVLQGAERIAINTPIQGSAADIVK 858

Query: 1049 CAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVD 1108
             AM+++         G K+LLQVHDE+I E P ++A  A +I+   M         L++ 
Sbjct: 859  TAMIKVQAALEKSGTGAKMLLQVHDELIFECPEDNAGNAISIIQREMENAV----QLKIP 914

Query: 1109 LSVDAKCAQNW 1119
            L V  +  +NW
Sbjct: 915  LRVSVERGKNW 925


>gi|423711912|ref|ZP_17686217.1| DNA polymerase I [Bartonella washoensis Sb944nv]
 gi|395412760|gb|EJF79240.1| DNA polymerase I [Bartonella washoensis Sb944nv]
          Length = 968

 Score =  193 bits (490), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 118/316 (37%), Positives = 169/316 (53%), Gaps = 32/316 (10%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIRQAFIA
Sbjct: 680  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRQAFIA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+AN  ++ +AF  G D H+ TA  M+             
Sbjct: 732  PEGHVLLSADYSQIELRILAHIANIDALKEAFAQGQDIHAITASQMFG------------ 779

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
                      +P+ K+  +  RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 780  ----------MPI-KEMPSDIRRRAKAINFGIIYGISAFGLANQLGLSRQEAGRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R   +V T+ GR   +P IK+  +  R   ERAAIN P+QGSA
Sbjct: 829  ERFPGIKDYMETTKAFARQHGYVQTIFGRRIHYPEIKANNQQVRAFNERAAINAPIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN 1103
            AD+   AM+ +      ++L  K+LLQVHDE+I E P   ++   A+V + M        
Sbjct: 889  ADIIRRAMIHMEDALEKEKLSAKMLLQVHDELIFEVPKAESDKTIALVKKVMENATMPVL 948

Query: 1104 NLRVDLSVDAKCAQNW 1119
            +L V L V    AQNW
Sbjct: 949  SLSVPLEVKVMTAQNW 964



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 99/246 (40%), Gaps = 57/246 (23%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
           L    P  ++ ++ K+  N  +D  V++  G+ +  F  DTM ++   D+          
Sbjct: 439 LKLLKPILQNQAVLKIGQNMKYDWLVMKQQGIVMRSFD-DTMLLSYALDAG--------- 488

Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
            ALT +   +SE    Y+               I+ KD+    K        KIS+ A V
Sbjct: 489 -ALTHNMDALSERWLGYKP--------------IAYKDLTHNGK--------KISSFAQV 525

Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQP 604
           +  Q         Y+A D+  TL+L++ LK +L+             K M   Y+   +P
Sbjct: 526 DLKQAT------FYAAEDADITLRLWQVLKPQLV------------AKGMTKIYERLDRP 567

Query: 605 FGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQL 664
             E+L +ME  G+L+DR+ L       R   E A   F      +    +  N+ S  QL
Sbjct: 568 LIEVLARMEERGILIDRQIL------LRLSGELAQAAFILEEEIYQLAGEKFNIASPKQL 621

Query: 665 RQLLFG 670
             +LFG
Sbjct: 622 GNILFG 627


>gi|357237551|ref|ZP_09124892.1| DNA-directed DNA polymerase [Streptococcus ictaluri 707-05]
 gi|356753741|gb|EHI70844.1| DNA-directed DNA polymerase [Streptococcus ictaluri 707-05]
          Length = 880

 Score =  193 bits (490), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 187/347 (53%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMSDGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     +SL+++ DY Q+ELR+LAH++  + ++ AFK
Sbjct: 621  SVDPNLQNIPIRLEQGRL-IRKAFTPSQADSLLLSSDYSQIELRVLAHISGDEHLIAAFK 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D  A++RR AK +NF I 
Sbjct: 680  EGADIHTATAMRVF-----------------GIEKP-----EDVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S ++AK+ +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGISRKQAKQYIDTYFERYPGIKDYMERVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + +  +  +   K+LLQVHDE++
Sbjct: 778  PDINSRNFNLRSFAERTAINSPIQGSAADILKIAMINLDQALQDGQFEAKMLLQVHDEIV 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P +  +  K +V E M        +L V L  D    Q+WY AK
Sbjct: 838  LEVPEQELQAVKKLVKETMESAV----SLAVPLQADENTGQSWYEAK 880


>gi|328957053|ref|YP_004374439.1| DNA polymerase I [Carnobacterium sp. 17-4]
 gi|328673377|gb|AEB29423.1| DNA polymerase I [Carnobacterium sp. 17-4]
          Length = 887

 Score =  193 bits (490), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 183/347 (52%), Gaps = 37/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCS-LNINTETGRL 837
            A D +  L E   I   I ++  I  +Q + + G       K G++H   +    +TGRL
Sbjct: 567  AVDVLEQLREQAPIVEHILDYRQIAKIQSTYIEGLLKVIDKKTGKIHTRYMQTIAQTGRL 626

Query: 838  SARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFK 896
            S+  PNLQN P   ++  KIRQAF+ +  G  +  +DY Q+ELR+L H+++ K + +AF 
Sbjct: 627  SSVDPNLQNIPIRLEEGRKIRQAFVPSHEGWEIFASDYSQIELRVLGHVSDDKLLKEAFI 686

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D HS TAM ++                 G   P     ++  +  RR+AK +NF I 
Sbjct: 687  EGQDIHSSTAMQVF-----------------GIGSP-----EEVSSEMRRRAKAVNFGIV 724

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+++  +S +EA+  +D ++ +   V T+ E   +E++    V TL  R R  
Sbjct: 725  YGISDYGLSQNLGISRKEAQHFIDTYFEKYPGVKTYMEDIVREAKDKGFVETLFQRRRYL 784

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AINTP+QGSAAD+   AM+++ +  +   +   +LLQVHDE+I
Sbjct: 785  PEINSRNFNLRSFAERTAINTPIQGSAADIIKIAMIKMDQKLKESTMKATMLLQVHDELI 844

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E P E  E  +A+VVE M     G   L V L VD+   ++WY AK
Sbjct: 845  FEAPKEEIEQLRALVVEVME----GAVELSVPLKVDSNSGKSWYEAK 887


>gi|125625183|ref|YP_001033666.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|389855570|ref|YP_006357814.1| DNA polymerase I [Lactococcus lactis subsp. cremoris NZ9000]
 gi|146345413|sp|O32801.2|DPO1_LACLM RecName: Full=DNA polymerase I; Short=POL I
 gi|124493991|emb|CAL98989.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071992|gb|ADJ61392.1| DNA polymerase I [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 877

 Score =  193 bits (490), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 117/345 (33%), Positives = 184/345 (53%), Gaps = 35/345 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  + + I  +  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 559  AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 618

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P   ++  KIR+AF+    + L+ +DY Q+ELR+LAH++  + ++DAFK G
Sbjct: 619  SVDPNLQNIPVRLEEGRKIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHG 678

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TAM ++      +E  +                 D  A++RR AK +NF + YG
Sbjct: 679  ADIHTSTAMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 716

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E+R    V T+  R R+ P 
Sbjct: 717  ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 776

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            I +   + R   ER AIN+P+QGSAAD+   AM+ + K    ++   KLLLQVHDE+IL+
Sbjct: 777  INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALTERQSKSKLLLQVHDEIILD 836

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E  E  KA+V + M +       L V L VD    + WY AK
Sbjct: 837  VPLEELEDIKALVKQTMEEAI----ELAVPLKVDDNTGKTWYEAK 877


>gi|154250561|ref|YP_001411385.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
 gi|154154511|gb|ABS61728.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
          Length = 979

 Score =  192 bits (489), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 166/307 (54%), Gaps = 24/307 (7%)

Query: 817  VSGKNGRVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GR+H C    +T TGRL++  PNLQN P   +D  KIR AF+A  GN LI ADY 
Sbjct: 695  INPETGRIHTCYSLASTSTGRLASTEPNLQNIPVRTEDGRKIRTAFVAEKGNLLISADYS 754

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+ +++  AF  G D H+ TA  M+      +E+                
Sbjct: 755  QIELRLLAHIADIEALKKAFAEGLDIHAMTASEMFGVPIEGMES---------------- 798

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                   S RR+AK +NF I YG +  GLA    +  +EA + +D ++     +  + + 
Sbjct: 799  -------SVRRRAKAINFGIIYGISAFGLANQLGIPRQEAGEYIDRYFKRFPGIRAYMDD 851

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +  +  + +V T+ GR    PAI S   ++++ +ERAAIN P+QGSAAD+   AM+ + 
Sbjct: 852  TRDFAHKNGYVETIFGRRIHLPAINSKNPAEKSFMERAAINAPIQGSAADIIRRAMIRMP 911

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
            +     +L  ++LLQVHDE+I E P + AE    +V   MS        L V L VDA+ 
Sbjct: 912  QALADAKLAARMLLQVHDELIFEVPEKEAEKTSKVVSRIMSDAAAPAVALTVPLDVDARA 971

Query: 1116 AQNWYSA 1122
            A+NW  A
Sbjct: 972  AKNWDEA 978



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 103/270 (38%), Gaps = 79/270 (29%)

Query: 414 VDLLDGGG------RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMH 467
           +D  D GG      ++ +    P  EDPSI K+  N  FD  VL  +G+++ G   DTM 
Sbjct: 433 LDFADAGGQPQIPLKEAIARLKPLLEDPSILKIGQNLKFDMTVLRQHGIQLKGLD-DTML 491

Query: 468 MARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR 527
           M+   D+     G   L  L    K                         IS  ++ G+ 
Sbjct: 492 MSYALDAGVHGHGMDELSELHLGHK------------------------PISFAEVAGK- 526

Query: 528 KLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGK 587
                G A       PV+           +Y+A D+  TL+L+  LK +L+         
Sbjct: 527 -----GKAQITFDQVPVDR--------ATAYAAEDADVTLRLWHILKPRLV--------- 564

Query: 588 PVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEA---AV 639
               +     Y+   +P   +L +ME  G+ VD+  L+ +     +K+A+ E E    A 
Sbjct: 565 ---AERRVTVYETLERPLVSVLAEMERAGVKVDKAVLARLSGDFSQKMAQYEDEIYELAG 621

Query: 640 NRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
            RF              N+GS  QL ++LF
Sbjct: 622 ERF--------------NIGSPKQLGEILF 637


>gi|423223209|ref|ZP_17209678.1| DNA polymerase I [Bacteroides cellulosilyticus CL02T12C19]
 gi|392639310|gb|EIY33135.1| DNA polymerase I [Bacteroides cellulosilyticus CL02T12C19]
          Length = 952

 Score =  192 bits (489), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 178/351 (50%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-IN 831
            + T +E  E+     + I  + E   +  L+  +I  LPL    ++ + GR+H S N   
Sbjct: 631  YVTSEEVLESLRNKHEIIGKILEYRGLKKLLGTYIDALPLL---INPRTGRIHTSFNQAV 687

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M
Sbjct: 688  TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNM 747

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y      V+                  +KD  +  RRKAK  
Sbjct: 748  IDAFLSGYDIHAATAAKIY-----KVD------------------IKDVTSDMRRKAKTA 784

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    +V  + +   + +R   +V T+  
Sbjct: 785  NFGIIYGISIFGLAERMNVDRKEAKELIDGYFETYPQVREYMDKSIQIAREQGYVETIFH 844

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S   + R + ER AIN P+QGSAAD+   AM  I K  +   L  K++LQV
Sbjct: 845  RKRFLPDINSRNATVRGYAERNAINAPIQGSAADIIKVAMARIYKRFQSNNLKAKMILQV 904

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+    P    E  + IV+E M + +     + V L  D    +NW  A
Sbjct: 905  HDELNFSVPEAEKEFVQQIVIEEMERAY----RMHVPLRADCGWGKNWLEA 951



 Score = 43.1 bits (100), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           ++NEF P +E+ +  KV  N  +D  VL+NYG++V G   DTM
Sbjct: 425 IVNEFRPLYENETSMKVGQNIKYDILVLQNYGMEVKGELFDTM 467


>gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
 gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
          Length = 882

 Score =  192 bits (489), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 119/334 (35%), Positives = 180/334 (53%), Gaps = 30/334 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            I A+     +  L S +I  L    +  K  +VH   N   T TGRLS+  PNLQN P  
Sbjct: 577  IDAILTFRQLGKLRSTYIEGLT-KEIHTKTSKVHTLYNQATTATGRLSSTDPNLQNIPIR 635

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  KIR+AFI +  G  ++ ADY Q+ELRILAH++  ++++DAF+ G D H+RTAM++
Sbjct: 636  MEEGRKIREAFIPSEDGWYMLAADYSQIELRILAHISQDENLIDAFQKGMDIHTRTAMDV 695

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +                 G  +  V  L       RR+AK +NF I YG +  GL+++  
Sbjct: 696  F-----------------GVSEEEVTSLM------RRQAKAVNFGIVYGISDYGLSQNLN 732

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            ++ +EA   ++ +++    V  W +   ++++ D HV TLL R R  P I+S   + R+ 
Sbjct: 733  ITRKEAGDFIERYFDVFSGVKRWMDEIVQQAKADGHVTTLLNRRRYLPDIRSSNFNLRSF 792

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER A+NTP+QG+AADV   AM+ + +    K L  ++LLQVHDE++ E P    EV + 
Sbjct: 793  AERTAMNTPIQGTAADVIKLAMIRMQEALEEKGLASRMLLQVHDELVFEVPDNELEVMRK 852

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +V E M        +L V L VD    + WY AK
Sbjct: 853  LVPEVMESAL----SLDVPLKVDVSDGRTWYDAK 882


>gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36]
 gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36]
          Length = 951

 Score =  192 bits (489), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 122/343 (35%), Positives = 172/343 (50%), Gaps = 33/343 (9%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSA 839
            Q  R   D I  + E   +  L+S +I  LP     ++ + GR+H S N   T TGRLS+
Sbjct: 638  QSYRSKHDIIGKILEYRGLKKLLSTYIDALP---QLINPRTGRIHTSFNQAVTATGRLSS 694

Query: 840  RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
              PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M++AF +G 
Sbjct: 695  SNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIEAFLSGH 754

Query: 900  DFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGK 959
            D H+ TA  +Y    N                       D  A  RRKAK  NF I YG 
Sbjct: 755  DIHAATAAKIYKIDIN-----------------------DVTADMRRKAKTANFGIIYGI 791

Query: 960  TPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAI 1019
            +  GLA    VS +EAK+ +D ++    +V  + +   + +R   +V T+  R R  P I
Sbjct: 792  SVFGLAERMGVSRQEAKELIDGYFETYPQVKEYMDKSIQVAREQGYVETIFHRKRFLPDI 851

Query: 1020 KSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEG 1079
             S     R + ER AIN P+QGSAAD+   AM  I +  +   L  K++LQVHDE+    
Sbjct: 852  NSRNGVVRGYAERNAINAPIQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSV 911

Query: 1080 PSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            P    E+ + IV+E M + +     ++V L  D     NW  A
Sbjct: 912  PEAEKELVQKIVIEEMEQAY----RMQVPLKADCGWGNNWLQA 950



 Score = 47.8 bits (112), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 129/319 (40%), Gaps = 79/319 (24%)

Query: 310 NDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVW-MLTNKYKHL 368
           N A EGTG     SEN N  +LE+L         +  ++D      +++  +LT++    
Sbjct: 335 NFAGEGTG----VSENSNLTRLEMLDV-------DYQLIDTEDKRAEIIQKLLTSE---- 379

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEF 428
           + + DTE    +     P+D  E++  S      +D  N    + V         ++NEF
Sbjct: 380 ILSIDTETTGTE-----PMD-AELVGMSF-----SDAENRAYYVPVPAEREEVLKIVNEF 428

Query: 429 APFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALT 488
            P FE+    KV  N  +D  +L+NYG++V G   DTM    +     R    Y      
Sbjct: 429 RPLFENEKSMKVGQNIKYDMIILQNYGVQVKGKLFDTMLAHYVLQPELRHNMDY------ 482

Query: 489 GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR-KLKKDGSAGKISTIAPVEEL 547
                ++E    YQ               I +  + G R K +K+     +  ++P E++
Sbjct: 483 -----LAEIYLHYQ--------------TIHIDKLIGARGKNQKN-----MRDLSP-EDV 517

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
            R        Y+  D+  TLKL   L+K+L E   +              + E   P   
Sbjct: 518 YR--------YACEDADVTLKLKNVLEKELKEQGAE------------HLFYEIEMPLVP 557

Query: 608 ILVKMETEGMLVDREYLSE 626
           +LV +E+ G+L+D E L +
Sbjct: 558 VLVNIESNGVLLDTEALKQ 576


>gi|357041237|ref|ZP_09103016.1| DNA polymerase I [Desulfotomaculum gibsoniae DSM 7213]
 gi|355355574|gb|EHG03384.1| DNA polymerase I [Desulfotomaculum gibsoniae DSM 7213]
          Length = 882

 Score =  192 bits (489), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 116/309 (37%), Positives = 164/309 (53%), Gaps = 29/309 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA-VPGNSLIVADY 874
            ++   GR+H + + + T TGRLS+  PNLQN P   ++  +IR+ FI   PGN ++ ADY
Sbjct: 599  INPTTGRIHTTFHQDVTATGRLSSSNPNLQNIPIRLQEGRRIRRVFIPHQPGNLILTADY 658

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELRILAH++   +++ AFK G D H+RTA  ++      V   QV  E         
Sbjct: 659  SQIELRILAHMSGDLNLISAFKQGQDIHTRTAAEVF-----NVPMEQVTPEM-------- 705

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                      R +AK +NF I YG +  GL+RD KVS  EA K +  ++     V  + +
Sbjct: 706  ----------RSRAKAVNFGIVYGISDFGLSRDIKVSRAEAGKYIRSYFERYSGVKEFID 755

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             +  E+R   +  TLL R R  P I S  R  R   ER AINTP+QGSAAD+   AM+ I
Sbjct: 756  RKIAEARDKGYATTLLNRRRYLPDISSRNRVTRAFGERTAINTPIQGSAADIIKLAMVRI 815

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                + +++  K++LQVHDE+I + P E  +  K +V E M         L V L VD K
Sbjct: 816  HNELKKRQMATKMILQVHDELIFDVPPEELDTVKNMVTEYMENAL----QLDVPLVVDLK 871

Query: 1115 CAQNWYSAK 1123
               NWY  +
Sbjct: 872  LGPNWYDVR 880


>gi|61611902|gb|AAX47270.1| DNA polymerase large fragment [Thermus aquaticus]
          Length = 554

 Score =  192 bits (489), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 121/345 (35%), Positives = 181/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 239  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 297

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 298  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 357

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +N+ + YG
Sbjct: 358  RDIHTETASWMFGVPREAVD----------------PLM-------RRTAKTINYGVLYG 394

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 395  MSAHHLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 454

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 455  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLLP--RLEEMGARMLLQVHDELVLE 512

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E AE    +  E M     G   L V L V+    ++W SAK
Sbjct: 513  APKERAEAVARLAKEVM----EGVYPLAVPLEVEVGIGEDWLSAK 553


>gi|381190626|ref|ZP_09898144.1| DNA polymerase I [Thermus sp. RL]
 gi|380451509|gb|EIA39115.1| DNA polymerase I [Thermus sp. RL]
          Length = 831

 Score =  192 bits (489), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 121/345 (35%), Positives = 182/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + ++ PL G  V  + GR+H   N   T TGRLS
Sbjct: 516  AVLEALREAHPIVEKILQHRELTKLKNTYVDPLPGL-VHPRTGRLHTRFNQTATATGRLS 574

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G +L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 575  SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 634

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                PL+       RR AK +NF + YG
Sbjct: 635  KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 671

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   +D ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 672  MSAHRLSQELSIPYEEAVAFIDRYFKSFPKVKAWIERTLEEGRQRGYVETLFGRRRYVPD 731

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            + +  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 732  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLREMGARMLLQVHDELLLE 789

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P   AE   A+  E M K +     L V L V+    ++W SAK
Sbjct: 790  APQARAEEVAALAKEAMEKAY----PLAVPLEVEVGIGEDWLSAK 830


>gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 996

 Score =  192 bits (489), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 126/339 (37%), Positives = 169/339 (49%), Gaps = 25/339 (7%)

Query: 782  EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSAR 840
            E  A E  D    + +   +  L S +   L G  V+ + GRVH S  +  T TGRLS+ 
Sbjct: 678  EDLANEGNDFARRILDWRQLSKLKSTYTDALPGF-VNKETGRVHTSYALAATTTGRLSSS 736

Query: 841  RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
             PNLQN P   +   KIR+AF+A PG+ LI ADY Q+ELR+LAH+A+   +  AF  G D
Sbjct: 737  DPNLQNIPVRNEAGRKIRKAFVASPGHVLISADYSQIELRLLAHIADIPQLKKAFADGID 796

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H+ TA  M+                       VP+ KD     RR+AK +NF I YG +
Sbjct: 797  IHAMTASEMFG----------------------VPV-KDMPPEVRRRAKAINFGIIYGIS 833

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GLA    +  EEA   +  ++     +  + EA KK  R    V T+ GR   FP I 
Sbjct: 834  AFGLANQLSIPREEAGAYIKRYFERFPGIRDYMEATKKLVREKGAVTTIFGRVCHFPRIG 893

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGP 1080
            S   S R   ERAAIN P+QG+AAD+   AM+ +      + L  ++LLQVHDE++ E P
Sbjct: 894  SANASDRAFYERAAINAPIQGAAADIIRRAMVRMDDALASEGLKAQMLLQVHDELVFEAP 953

Query: 1081 SESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             + AE    I    M +       L V L VDA+ A NW
Sbjct: 954  KKEAEATIEIARRVMEEAPAPAVQLAVPLKVDARAAANW 992


>gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB]
 gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB]
          Length = 901

 Score =  192 bits (489), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 116/326 (35%), Positives = 177/326 (54%), Gaps = 39/326 (11%)

Query: 800  SIDSLISNFI--LPLQGSNVSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYK 856
            S+  L S +I  LP   S ++ + GR+H S N     TGRLS+  PNLQN P    +  +
Sbjct: 604  SMAKLKSTYIDALP---SLINIRTGRIHTSYNQTVAATGRLSSSNPNLQNIPIRTLEGKR 660

Query: 857  IRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY---PHI 913
            IRQAFIA PG +++ ADY Q+ELR+LAHL+    +++AF AG D HSRTA +++   P +
Sbjct: 661  IRQAFIAPPGWAIVSADYSQIELRVLAHLSEDPVLINAFAAGEDIHSRTAADVFGVFPEM 720

Query: 914  RNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVE 973
             NA                            RR+AK++NF + YG +  GL+R+  +  +
Sbjct: 721  INA--------------------------EMRRQAKVINFGVLYGMSAFGLSRELGIPQK 754

Query: 974  EAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERA 1033
            +A+  +D ++ + + V T+ +   +++R   +V TLL R R  P I S+  + R   ER 
Sbjct: 755  QAQAYIDGYFKKYESVKTYLDGILQQARERGYVTTLLNRRRYLPEINSVNPAVRQLAERM 814

Query: 1034 AINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVE 1093
            AIN P+QG+AAD+   AML I+   R K +   + +QVHDE++ E P E     K  ++ 
Sbjct: 815  AINAPIQGTAADLIKMAMLRIADLIREKGMKSAMTMQVHDELVFEVPQEE----KIALMN 870

Query: 1094 CMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             + +   G   L+V L VD    +NW
Sbjct: 871  LVRQEMEGVVELKVPLKVDIASGRNW 896


>gi|401564732|ref|ZP_10805603.1| DNA-directed DNA polymerase [Selenomonas sp. FOBRC6]
 gi|400188555|gb|EJO22713.1| DNA-directed DNA polymerase [Selenomonas sp. FOBRC6]
          Length = 877

 Score =  192 bits (488), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 116/312 (37%), Positives = 170/312 (54%), Gaps = 29/312 (9%)

Query: 814  GSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIV 871
            G+ +    GRVH S N   T TGRLS+  PNLQN P   ++   +R  F    G ++L+ 
Sbjct: 593  GALIRPATGRVHTSFNQTVTATGRLSSSDPNLQNIPVRTEEGRAVRALFEPGAGYDALLS 652

Query: 872  ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDK 931
            ADY Q+ELRILAH++  ++M+DAF+ G D H+RTA  ++         G  L E  GE  
Sbjct: 653  ADYSQIELRILAHMSGDETMIDAFRTGQDIHARTASEVF---------GVPLAEVTGE-- 701

Query: 932  PPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLT 991
                        +RR+AK +NF I YG +  GL+RD  +S +EA   ++ ++     V  
Sbjct: 702  ------------QRRRAKAVNFGIVYGLSDFGLSRDLGISRKEAGGYIERYFERYHGVRA 749

Query: 992  WQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAM 1051
            + +    ++  + +V TL GR R  PAI S    QR+  ER A+NTP+QG+AAD+   AM
Sbjct: 750  FLDKMVSDAHANGYVTTLYGRRRDLPAINSRNFMQRSFAERMAMNTPIQGTAADLIKIAM 809

Query: 1052 LEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSV 1111
            +      R   +  ++LLQVHDE++LE  +  AE+A+  V E +    +G   L V L+V
Sbjct: 810  IRAHDALRAAGVQSRILLQVHDELVLE--AVEAEIAQ--VTEILRAEMSGAAELAVPLAV 865

Query: 1112 DAKCAQNWYSAK 1123
            D    +NW  AK
Sbjct: 866  DVHVGKNWAEAK 877


>gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 941

 Score =  192 bits (488), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 178/351 (50%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-IN 831
            + T +E  E+     + I  + E   +  L+  +I  LPL    ++ + GR+H S N   
Sbjct: 620  YVTSEEVLESLRNKHEIIGKILEYRGLKKLLGTYIDALPLL---INPRTGRIHTSFNQAV 676

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M
Sbjct: 677  TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNM 736

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y      V+                  +KD  +  RRKAK  
Sbjct: 737  IDAFLSGYDIHAATAAKIY-----KVD------------------IKDVTSDMRRKAKTA 773

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    +V  + +   + +R   +V T+  
Sbjct: 774  NFGIIYGISIFGLAERMNVDRKEAKELIDGYFETYPQVREYMDKSIQIAREQGYVETIFH 833

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S   + R + ER AIN P+QGSAAD+   AM  I K  +   L  K++LQV
Sbjct: 834  RKRFLPDINSRNATVRGYAERNAINAPIQGSAADIIKVAMARIYKRFQSNNLKAKMILQV 893

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+    P    E  + IV+E M + +     + V L  D    +NW  A
Sbjct: 894  HDELNFSVPEAEKEFVQQIVIEEMERAY----RMHVPLRADCGWGKNWLEA 940



 Score = 43.1 bits (100), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           ++NEF P +E+ +  KV  N  +D  VL+NYG++V G   DTM
Sbjct: 414 IVNEFRPLYENETSMKVGQNIKYDILVLQNYGMEVKGELFDTM 456


>gi|423317224|ref|ZP_17295129.1| DNA polymerase I [Bergeyella zoohelcum ATCC 43767]
 gi|405581696|gb|EKB55710.1| DNA polymerase I [Bergeyella zoohelcum ATCC 43767]
          Length = 938

 Score =  192 bits (488), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 118/334 (35%), Positives = 173/334 (51%), Gaps = 33/334 (9%)

Query: 792  ISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNINTE-TGRLSARRPNLQNQP 848
            I  + E  +   L S ++  LP Q S +   +GRVH S +  T  TGRL++  PNLQN P
Sbjct: 634  IPLILEYRTYQKLKSTYVDALPTQISKI---DGRVHTSFSQTTAATGRLASLNPNLQNIP 690

Query: 849  ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
               +   +IR AF A  G  +I ADY Q+ELR++A ++  K+M++AF+ G D H+ TA  
Sbjct: 691  IRTERGQQIRGAFRAEKGKKIISADYSQIELRLIAEISGEKNMIEAFQKGEDIHASTAAK 750

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                    K P+    +   ++R +AK +NF I YG+    LA   
Sbjct: 751  LF--------------------KIPI---DEVNKTQRSQAKTVNFGIIYGQGAFALAEQT 787

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S  EAK+ +D ++     +  W  A+ K++R   +V TLLGR R    I+S     R+
Sbjct: 788  GLSRAEAKQMIDAYFQTYPTMKEWMTAQVKKARELGYVETLLGRKRHLKDIQSNNFVVRS 847

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
            H ER A+N P+QGSAAD+   AM+EISK  + +    K+LLQVHDE+I E P E  E   
Sbjct: 848  HAERNAVNAPIQGSAADIIKIAMIEISKKLKEENRATKMLLQVHDELIFEAPIEEVEAVT 907

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            A++  CM           V L V+     +W  A
Sbjct: 908  ALITSCMENAVKTT----VPLLVEVGVGDHWLEA 937



 Score = 46.2 bits (108), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
           F PFFE  ++ K+ HN+ +D  VL+NYG+   G   DTM    L +   R
Sbjct: 415 FKPFFEAKTVMKIAHNFKYDYKVLKNYGVHFDGVLFDTMIAHYLLNPDGR 464


>gi|373857545|ref|ZP_09600286.1| DNA polymerase I [Bacillus sp. 1NLA3E]
 gi|372452677|gb|EHP26147.1| DNA polymerase I [Bacillus sp. 1NLA3E]
          Length = 877

 Score =  192 bits (488), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 181/336 (53%), Gaps = 30/336 (8%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQP 848
            D I  +     +  L S +I  L    V  +  +VH   N   T+TGRLS+  PNLQN P
Sbjct: 570  DIIKEILHYRQLGKLQSTYIEGLLKV-VDPETLKVHTRYNQALTQTGRLSSTDPNLQNIP 628

Query: 849  ALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
               ++  KIRQAFI + PG  +  ADY Q+ELR+LA +A  + +++AFK G D H++TAM
Sbjct: 629  IRLEEGRKIRQAFIPSEPGWMMFAADYSQIELRVLADIAEDEKLIEAFKEGLDIHTKTAM 688

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
            +++ H+                        +D  +S RR+AK +NF I YG +  GL+++
Sbjct: 689  DVF-HVAK----------------------EDVTSSMRRQAKAVNFGIIYGISDYGLSQN 725

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ ++A K +DL+      V  + E   K+++    V TLL R R  P I S   + R
Sbjct: 726  LGITRKDAGKFIDLYLQSYPRVKDYMEDIVKDAKQKGFVSTLLHRRRYIPEITSRNFNVR 785

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVA 1087
            +  ER A+NTP+QGSAAD+   AM+++++  + + +  +LLLQVHDE+I E P E  E+ 
Sbjct: 786  SFAERTAMNTPIQGSAADIIKKAMIDMAERLKTEGIKARLLLQVHDELIFEAPEEEIEIL 845

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            K IV + M         L+V L VD      W+ AK
Sbjct: 846  KKIVPDVMEHAI----ELKVPLKVDYAYGPTWFDAK 877


>gi|385839456|ref|YP_005877086.1| DNA polymerase I [Lactococcus lactis subsp. cremoris A76]
 gi|358750684|gb|AEU41663.1| DNA polymerase I [Lactococcus lactis subsp. cremoris A76]
          Length = 826

 Score =  192 bits (488), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 184/345 (53%), Gaps = 35/345 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  + + I  +  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 508  AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 567

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P   ++  KIR+AF+    + L+ +DY Q+ELR+LAH++  + ++DAFK G
Sbjct: 568  SVDPNLQNIPVRLEEGRKIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHG 627

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ T+M ++      +E  +                 D  A++RR AK +NF + YG
Sbjct: 628  ADIHTSTSMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 665

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E+R    V T+  R R+ P 
Sbjct: 666  ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 725

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            I +   + R   ER AIN+P+QGSAAD+   AM+ + K    ++   KLLLQVHDE+IL+
Sbjct: 726  INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALTERQSKSKLLLQVHDEIILD 785

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E  E  +A+V E M +       L V L VD    + WY AK
Sbjct: 786  VPLEELEEIQALVKETMEEAI----ELAVPLKVDENTGKTWYEAK 826


>gi|386585743|ref|YP_006082145.1| DNA polymerase I [Streptococcus suis D12]
 gi|353737889|gb|AER18897.1| DNA polymerase I [Streptococcus suis D12]
          Length = 878

 Score =  192 bits (488), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 182/336 (54%), Gaps = 32/336 (9%)

Query: 791  AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
             +S + E   I  L S +++ LQ + +  ++G++H   +   T+TGRLS+  PNLQN P 
Sbjct: 572  VVSKILEYRQITKLQSTYVVGLQDAIL--EDGKIHTRYVQDLTQTGRLSSTDPNLQNIPV 629

Query: 850  -LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
             L++ R  IR+AF+    NS+++A DY Q+ELR+LAH++  + +++AF+ G D H+ TAM
Sbjct: 630  RLDQGRL-IRKAFVPSLENSVLLASDYSQIELRVLAHISQDQHLIEAFQQGADIHTSTAM 688

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
             ++      +E          ED  P         ++RR AK +NF + YG +  GL+ +
Sbjct: 689  RVF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLSNN 726

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ +EAK  +D ++     +  + E   +E+R   +V T+  R R  P I S   + R
Sbjct: 727  LGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVR 786

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVA 1087
            N  ER AIN+P+QGSAAD+   AM+ + K      L  ++LLQVHDE++LE P    E  
Sbjct: 787  NFAERTAINSPIQGSAADILKVAMINLDKALTETGLATRMLLQVHDEIVLEVPVAELETV 846

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            KA+V E M        +L V L  D      WY AK
Sbjct: 847  KAMVKETMESAI----SLSVPLIADENEGSTWYEAK 878


>gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
 gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
          Length = 897

 Score =  192 bits (488), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 183/338 (54%), Gaps = 35/338 (10%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQP 848
            D I  + E   +  L S ++  L    ++ + GR+H + N   T TGR+S+  PNLQN P
Sbjct: 591  DIIPKILEYRQVTKLKSTYVDGLLNI-INPETGRIHSNFNQTVTTTGRISSTEPNLQNIP 649

Query: 849  A-LEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
              LE  R ++R+ F+A   +  I ADY Q+ELR+LAH+   +++LDAF    D H+RTA 
Sbjct: 650  IKLEMGR-RLRKVFVANENHQFIDADYSQVELRVLAHICEDENLLDAFLKNQDIHTRTAA 708

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
             ++                   D P    +++   S R  AK +NF I YG +  GL+++
Sbjct: 709  EIF-------------------DVP----MEEVTDSMRSSAKAVNFGIVYGISDYGLSQN 745

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++  +AKK +D + ++   V  + +   +++    +V TL  R R  P +KS   + R
Sbjct: 746  LNITRVKAKKYIDNYLDKYPSVKRYMDEIVEQAHQQGYVVTLFNRRRYLPELKSRNFNIR 805

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAE 1085
            +  ER A+NTP+QGSAAD+   AM+ + +  RLKE G   KL+LQVHDE+I+E P    E
Sbjct: 806  SFGERMAMNTPIQGSAADIIKIAMVNVYR--RLKEQGLTSKLILQVHDELIVEAPDNEVE 863

Query: 1086 VAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            VA  IV E M +      NL+V L VD   A NWY AK
Sbjct: 864  VAIKIVRESMEEAM----NLKVQLKVDLAYANNWYDAK 897


>gi|392375299|ref|YP_003207132.1| DNA polymerase I [Candidatus Methylomirabilis oxyfera]
 gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [Candidatus Methylomirabilis oxyfera]
          Length = 873

 Score =  192 bits (488), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 166/303 (54%), Gaps = 28/303 (9%)

Query: 821  NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            +GR+H S N   T TGRLS+  PNLQN P   +   +IRQAF+A  G+ L+ ADY Q+EL
Sbjct: 596  SGRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEVGRRIRQAFVASEGHRLLSADYSQIEL 655

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RILAHL+  ++++ AF AGGD H  TA  ++      V+   V +E              
Sbjct: 656  RILAHLSQDQALIAAFIAGGDVHRSTAAEVF-----GVQPEAVTVEM------------- 697

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RR+AK++NF I YG +P GLA + ++S EEA   +D ++     V  + +    E
Sbjct: 698  -----RRRAKVINFGIVYGMSPFGLAAELEISQEEAALYIDRYFQIYHGVKAFIDRTICE 752

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +R    V T  GR R  P +KS  ++ R   ER A+NTP+QGSAAD+   AM+ IS+  R
Sbjct: 753  ARELGFVSTFWGRRRAIPELKSSDQTVRQLGERLAVNTPIQGSAADLIKVAMIAISRRLR 812

Query: 1060 LKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             ++L  +++LQ+HDE++ E P    +VA+ +  E M         L V L VD     +W
Sbjct: 813  SEQLETRMILQIHDELLFEVPEVELDVARRMATEEM----EWAATLSVPLKVDIGVGTSW 868

Query: 1120 YSA 1122
              A
Sbjct: 869  AEA 871


>gi|2281294|gb|AAB64184.1| DNA polymerase I (PolI) [Lactococcus lactis subsp. cremoris MG1363]
          Length = 877

 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 169/304 (55%), Gaps = 27/304 (8%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            +G++H   +   T+TGRLS+  PNLQN P   ++  KIR+AF+    + L+ +DY Q+EL
Sbjct: 600  DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEEGRKIRKAFVPSQDSLLLSSDYSQIEL 659

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAH++  + ++DAFK G D H+ TAM ++      +E  +                 D
Sbjct: 660  RVLAHISADEHLIDAFKHGADIHTSTAMRVF-----GIEKAE-----------------D 697

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
              A++RR AK +NF + YG +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E
Sbjct: 698  VTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVRE 757

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +R    V T+  R R+ P I +   + R   ER AIN+P+QGSAAD+   AM+ + K   
Sbjct: 758  ARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALT 817

Query: 1060 LKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             ++   KLLLQVHDE+IL+ P E  E  KA+V + M +       L V L VD    + W
Sbjct: 818  ERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEAI----ELAVPLKVDDNTGKTW 873

Query: 1120 YSAK 1123
            Y AK
Sbjct: 874  YEAK 877


>gi|423071660|ref|ZP_17060433.1| DNA polymerase I [Streptococcus intermedius F0413]
 gi|355363434|gb|EHG11171.1| DNA polymerase I [Streptococcus intermedius F0413]
          Length = 905

 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 182/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I  +  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 586  AVDVLERLAPIAPIVEKILEYRQIAKIQSTYVMGLQDWILADGKIHTRYLQDLTQTGRLS 645

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  K +++AF+
Sbjct: 646  SVDPNLQNIPIRLEQGRL-IRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDKHLIEAFR 704

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D   ++RR AK +NF + 
Sbjct: 705  HGADIHTSTAMRVF-----------------GIEKP-----EDVTPNDRRNAKAVNFGVV 742

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 743  YGISDFGLANNLGISRKEAKSYIDTYFERYPRIKNYMENVVREARDKGYVETLFHRRREI 802

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +  R +    ++LLQVHDE++
Sbjct: 803  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALRAERFKSRMLLQVHDEIV 862

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P+    V K +V E M         L V L  D    + WY AK
Sbjct: 863  LEVPANELTVIKTLVKEIMESAI----ELSVPLKADESAGETWYEAK 905


>gi|423304347|ref|ZP_17282346.1| DNA polymerase I [Bacteroides uniformis CL03T00C23]
 gi|423310539|ref|ZP_17288523.1| DNA polymerase I [Bacteroides uniformis CL03T12C37]
 gi|392681710|gb|EIY75067.1| DNA polymerase I [Bacteroides uniformis CL03T12C37]
 gi|392684933|gb|EIY78253.1| DNA polymerase I [Bacteroides uniformis CL03T00C23]
          Length = 951

 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/343 (35%), Positives = 172/343 (50%), Gaps = 33/343 (9%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSA 839
            Q  R   D I  + E   +  L+S +I  LP     ++ + GR+H S N   T TGRLS+
Sbjct: 638  QSYRSKHDIIGKILEYRGLKKLLSTYIDALP---QLINPRTGRIHTSFNQAVTATGRLSS 694

Query: 840  RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
              PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M++AF +G 
Sbjct: 695  SNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIEAFLSGH 754

Query: 900  DFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGK 959
            D H+ TA  +Y    N                       D  A  RRKAK  NF I YG 
Sbjct: 755  DIHAATAAKIYKIDIN-----------------------DVTADMRRKAKTANFGIIYGI 791

Query: 960  TPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAI 1019
            +  GLA    VS +EAK+ +D ++    +V  + +   + +R   +V T+  R R  P I
Sbjct: 792  SVFGLAERMGVSRQEAKELIDGYFETYPQVKEYMDKSIQVAREQGYVETIFHRKRFLPDI 851

Query: 1020 KSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEG 1079
             S     R + ER AIN P+QGSAAD+   AM  I +  +   L  K++LQVHDE+    
Sbjct: 852  NSRNGVVRGYAERNAINAPIQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSV 911

Query: 1080 PSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            P    E+ + IV+E M + +     ++V L  D     NW  A
Sbjct: 912  PEAEKELVQKIVIEEMEQAY----RMQVPLKADCGWGNNWLQA 950



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 124/318 (38%), Gaps = 77/318 (24%)

Query: 310 NDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVW-MLTNKYKHL 368
           N A EGTG     SEN N  +LE+L         +  ++D      +++  +LT +    
Sbjct: 335 NFAGEGTG----VSENSNLTRLEMLDV-------DYQLIDTEDKRAEIIQKLLTIE---- 379

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEF 428
           + + DTE    +     P+D  E++  S      +D  N    + V         ++NEF
Sbjct: 380 ILSIDTETTGTE-----PMD-AELVGMSF-----SDAENRAYYVPVPAEREEVLKIVNEF 428

Query: 429 APFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALT 488
            P FE+    KV  N  +D  +L+NYG++V G   DTM    +     R    Y      
Sbjct: 429 RPLFENEKSMKVGQNIKYDMIILQNYGVQVKGKLFDTMLAHYVLQPELRHNMDY------ 482

Query: 489 GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQ 548
                ++E    YQ               I + ++ G R     G   K     P E++ 
Sbjct: 483 -----LAEIYLHYQ--------------TIHIDELIGAR-----GKNQKNMRDLPPEDVY 518

Query: 549 REERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEI 608
           R        Y+  D+  TLKL   L+K+L E   +              + E   P   +
Sbjct: 519 R--------YACEDADVTLKLKNVLEKELKEQGAE------------HLFYEIEMPLVPV 558

Query: 609 LVKMETEGMLVDREYLSE 626
           LV +E+ G+L+D E L +
Sbjct: 559 LVNIESNGVLLDTEALKQ 576


>gi|429737101|ref|ZP_19270974.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 138 str.
            F0429]
 gi|429153541|gb|EKX96323.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 138 str.
            F0429]
          Length = 877

 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/314 (37%), Positives = 171/314 (54%), Gaps = 33/314 (10%)

Query: 814  GSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG---NSL 869
            G+ +    GRVH S N   T TGRLS+  PNLQN P   ++   +R  F   PG   ++L
Sbjct: 593  GALIRPATGRVHTSFNQTVTATGRLSSSDPNLQNIPVRTEEGRAVRALF--EPGAGYDAL 650

Query: 870  IVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGE 929
            + ADY Q+ELRILAH++  ++M+DAF+ G D H+RTA  ++         G  L E  GE
Sbjct: 651  LSADYSQIELRILAHMSGDETMIDAFRTGQDIHARTASEVF---------GVPLAEVTGE 701

Query: 930  DKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEV 989
                          +RR+AK +NF I YG +  GL+RD  +S +EA   ++ ++     V
Sbjct: 702  --------------QRRRAKAVNFGIVYGLSDFGLSRDLGISRKEAGGYIERYFERYHGV 747

Query: 990  LTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMC 1049
              + +    ++  + +V TL GR R  PAI S    QR+  ER A+NTP+QG+AAD+   
Sbjct: 748  RAFLDKMVSDAHANGYVTTLYGRRRDLPAINSRNFMQRSFAERMAMNTPIQGTAADLIKI 807

Query: 1050 AMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDL 1109
            AM+      R   +  ++LLQVHDE++LE  +  AE+A+  V E +    +G   L V L
Sbjct: 808  AMIRAHDALRAAGVQSRILLQVHDELVLE--AVEAEIAQ--VTEILRAEMSGAAELAVPL 863

Query: 1110 SVDAKCAQNWYSAK 1123
            +VD    +NW  AK
Sbjct: 864  AVDVHVGKNWAEAK 877


>gi|384431242|ref|YP_005640602.1| DNA polymerase I [Thermus thermophilus SG0.5JP17-16]
 gi|333966710|gb|AEG33475.1| DNA polymerase I [Thermus thermophilus SG0.5JP17-16]
          Length = 831

 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/345 (34%), Positives = 182/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + ++ PL G  V  + GR+H   N   T TGRLS
Sbjct: 516  AVLEALREAHPIVEKILQHRELTKLKNTYVDPLPGL-VHPRTGRLHTRFNQTATATGRLS 574

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G +L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 575  SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 634

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                PL+       RR AK +NF + YG
Sbjct: 635  KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 671

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 672  MSAHRLSQELAIPYEEASAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 731

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            + +  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 732  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLREMGARMLLQVHDELLLE 789

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P   AE   A+  E M K +     L V L V+    ++W SAK
Sbjct: 790  APQARAEEVAALAKEAMEKAY----PLAVPLEVEVGIGEDWLSAK 830


>gi|110630020|gb|ABG80522.1| DNA polymerase I [Geobacillus anatolicus]
 gi|209360702|gb|ACI43003.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/311 (38%), Positives = 176/311 (56%), Gaps = 33/311 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  ADY
Sbjct: 597  VHHDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADY 656

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 657  SQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIF-HVSE------------------- 696

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 697  ---EEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKRYME 753

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R FP I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 754  TIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDL 813

Query: 1055 SKNARLKE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
            +  ARLKE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD
Sbjct: 814  A--ARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAV----ELRVPLKVD 867

Query: 1113 AKCAQNWYSAK 1123
                  WY  K
Sbjct: 868  YHYGPTWYDPK 878


>gi|209360708|gb|ACI43006.1| DNA polymerase I [Anoxybacillus sp. NB]
          Length = 878

 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/311 (38%), Positives = 176/311 (56%), Gaps = 33/311 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  ADY
Sbjct: 597  VHHDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADY 656

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 657  SQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIF-HVSE------------------- 696

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 697  ---EEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKRYME 753

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R FP I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 754  TIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDL 813

Query: 1055 SKNARLKE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
            +  ARLKE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD
Sbjct: 814  A--ARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAV----ELRVPLKVD 867

Query: 1113 AKCAQNWYSAK 1123
                  WY  K
Sbjct: 868  YHYGPTWYDPK 878


>gi|209360704|gb|ACI43004.1| DNA polymerase I [Geobacillus anatolicus]
          Length = 878

 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/311 (38%), Positives = 176/311 (56%), Gaps = 33/311 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  ADY
Sbjct: 597  VHHDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADY 656

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 657  SQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIF-HVSE------------------- 696

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 697  ---EEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKRYME 753

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R FP I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 754  TIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDL 813

Query: 1055 SKNARLKE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
            +  ARLKE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD
Sbjct: 814  A--ARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAV----ELRVPLKVD 867

Query: 1113 AKCAQNWYSAK 1123
                  WY  K
Sbjct: 868  YHYGPTWYDPK 878


>gi|209360706|gb|ACI43005.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/311 (38%), Positives = 176/311 (56%), Gaps = 33/311 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  ADY
Sbjct: 597  VHHDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADY 656

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 657  SQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIF-HVSE------------------- 696

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 697  ---EEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKRYME 753

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R FP I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 754  TIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDL 813

Query: 1055 SKNARLKE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
            +  ARLKE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD
Sbjct: 814  A--ARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAV----ELRVPLKVD 867

Query: 1113 AKCAQNWYSAK 1123
                  WY  K
Sbjct: 868  YHYGPTWYDPK 878


>gi|340708407|pdb|3PO4|A Chain A, Structure Of A Mutant Of The Large Fragment Of Dna
            Polymerase I From Thermus Aquaticus In Complex With A
            Blunt-Ended Dna And Ddatp
 gi|340708410|pdb|3PO5|A Chain A, Structure Of A Mutant Of The Large Fragment Of Dna
            Polymerase I From Thermus Auqaticus In Complex With An
            Abasic Site And Ddatp
 gi|340708431|pdb|3PY8|A Chain A, Crystal Structure Of A Mutant Of The Large Fragment Of Dna
            Polymerase I From Thermus Aquaticus In A Closed Ternary
            Complex With Dna And Ddctp
          Length = 540

 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 180/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 225  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 283

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q ELR+LAHL+  ++++  F+ G
Sbjct: 284  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQKELRVLAHLSGDENLIRVFQEG 343

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 344  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 380

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 381  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 440

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 441  LEARVKSVREAAERKAFNMPVQGTAADLMKLAMVKLFP--RLEEMGARMLLQVHDELVLE 498

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E AE    +  E M     G   L V L V+    ++W SAK
Sbjct: 499  APKERAEAVARLAKEVM----EGVYPLAVPLEVEVGIGEDWLSAK 539


>gi|395780492|ref|ZP_10460954.1| DNA polymerase I [Bartonella washoensis 085-0475]
 gi|395418838|gb|EJF85155.1| DNA polymerase I [Bartonella washoensis 085-0475]
          Length = 968

 Score =  191 bits (486), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/316 (36%), Positives = 169/316 (53%), Gaps = 32/316 (10%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIRQAFIA
Sbjct: 680  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRQAFIA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELR+LAH+A+  ++ +AF  G D H+ TA  M+             
Sbjct: 732  PEGHVLLSADYSQIELRVLAHIADIDALKEAFAQGQDIHAITASQMFG------------ 779

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
                      +P+ K+  +  RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 780  ----------IPI-KEMPSDIRRRAKAINFGIIYGISAFGLANQLGLSRQEAGRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R   +V T+ GR   +P IK+  +  R   ERAAIN P+QGSA
Sbjct: 829  ERFPGIKDYMETTKAFARQHGYVQTIFGRRIHYPEIKANNQQVRAFNERAAINAPIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN 1103
            AD+   AM+ +      ++L  K+LLQVHDE+I E P   ++   A+V + M        
Sbjct: 889  ADIIRRAMIHMEDALEKEKLSAKMLLQVHDELIFEVPKAESDKTIALVKKVMENATMPVL 948

Query: 1104 NLRVDLSVDAKCAQNW 1119
            +L V L V    AQNW
Sbjct: 949  SLSVPLEVKVMTAQNW 964



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 125/315 (39%), Gaps = 84/315 (26%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSC-IWVDLLDGG------GR- 422
           A DTE   +D  Q       +++ FS+   P      GK+  I ++ ++GG      GR 
Sbjct: 382 AFDTETTSLDPLQ------AKLVGFSLALQP------GKAAYIPLEHIEGGDDLLGCGRI 429

Query: 423 -------DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSS 475
                    L    P  ++ ++ K+  N  +D  V++  G+ +  F  DTM ++   D+ 
Sbjct: 430 AEQIETKKALKLLKPILQNQAVLKIGQNMKYDWLVMKQQGIVMRSFD-DTMLLSYALDAG 488

Query: 476 RRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSA 535
                     ALT +   +SE    Y+               I+ KD+    K       
Sbjct: 489 ----------ALTHNMDALSERWLGYKP--------------IAYKDLTHNGK------- 517

Query: 536 GKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMF 595
            KIS+ A V+  Q         Y+A D+  TL+L++ LK +L+             K M 
Sbjct: 518 -KISSFAQVDLKQAT------FYAAEDADITLRLWQVLKPQLV------------AKGMT 558

Query: 596 DFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKY 655
             Y+   +P  E+L +ME  G+L+D++ L       R   E A   F      +    + 
Sbjct: 559 KIYERLDRPLIEVLARMEERGILIDQQIL------LRLSGELAQAAFILEEEIYQLAGEK 612

Query: 656 MNVGSDTQLRQLLFG 670
            N+ S  QL  +LFG
Sbjct: 613 FNIASPKQLGNILFG 627


>gi|232010|sp|P30313.1|DPO1F_THETH RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tfl
            polymerase 1
 gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus
 gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus thermophilus]
          Length = 831

 Score =  191 bits (486), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 180/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + +I PL  + V  K GR+H   N   T TGRLS
Sbjct: 516  AVLEALREAHPIVDRILQYRELTKLKNTYIDPLP-ALVHPKTGRLHTRFNQTATATGRLS 574

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G  L+V DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 575  SSDPNLQNIPVRTPLGQRIRRAFVAEEGWVLVVLDYSQIELRVLAHLSGDENLIRVFQEG 634

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+      V+                PL+       RR AK +NF + YG
Sbjct: 635  RDIHTQTASWMFGVSPEGVD----------------PLM-------RRAAKTINFGVLYG 671

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+ +  +  EEA   ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 672  MSAHRLSGELSIPYEEAVAFIERYFQSYPKVRAWIEGTLEEGRRRGYVETLFGRRRYVPD 731

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            + +  +S R   ER A N PVQG+AAD+   AM+ +    RL+ELG ++LLQVHDE++LE
Sbjct: 732  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVRLFP--RLQELGARMLLQVHDELVLE 789

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P + AE   A+  E M     G   L+V L V+    ++W SAK
Sbjct: 790  APKDRAERVAALAKEVM----EGVWPLQVPLEVEVGLGEDWLSAK 830


>gi|402771296|ref|YP_006590833.1| DNA polymerase I [Methylocystis sp. SC2]
 gi|401773316|emb|CCJ06182.1| DNA polymerase I [Methylocystis sp. SC2]
          Length = 997

 Score =  191 bits (486), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 157/304 (51%), Gaps = 24/304 (7%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH S  +  T TGRLS+  PNLQN P   +   KIR+AF++ PG+ LI ADY 
Sbjct: 713  INAETGRVHTSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRKAFVSAPGHVLISADYS 772

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF    D H+ TA  M+                       VP
Sbjct: 773  QIELRLLAHIADIPQLRRAFAENLDIHAMTASEMFN----------------------VP 810

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            + KD     RR+AK +NF I YG +  GLA    +  EEA   +  ++     +  + ++
Sbjct: 811  I-KDMPPETRRRAKAINFGIIYGISAFGLANQLSIPREEASAYIKRYFERFPGIRDYMDS 869

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +K  R    V T+ GR   FP I S   S R   ERAAIN P+QG+AAD+   AM+ + 
Sbjct: 870  TRKTVREKGAVSTIFGRIYHFPGISSANASDRAFYERAAINAPIQGAAADIIRRAMIRMD 929

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
                   L  ++LLQVHDE++ E P+E AE    +    M +      +L V L VDA+ 
Sbjct: 930  DALIRAGLSAQMLLQVHDELVFEAPNEEAEATIELARRVMEQAPAPAVHLAVPLKVDARA 989

Query: 1116 AQNW 1119
            A NW
Sbjct: 990  AANW 993


>gi|209360698|gb|ACI43001.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/311 (38%), Positives = 176/311 (56%), Gaps = 33/311 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  ADY
Sbjct: 597  VHHDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADY 656

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 657  SQIELRVLAHIADDDNLIEAFRRDLDIHAKTAMDIF-HVSE------------------- 696

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 697  ---EEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKRYME 753

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 754  TIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDL 813

Query: 1055 SKNARLKE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
            +  ARLKE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD
Sbjct: 814  A--ARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAV----ELRVPLKVD 867

Query: 1113 AKCAQNWYSAK 1123
                  WY AK
Sbjct: 868  YHYGPTWYDAK 878


>gi|260584166|ref|ZP_05851914.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
 gi|260158792|gb|EEW93860.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
          Length = 883

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/334 (34%), Positives = 180/334 (53%), Gaps = 30/334 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPAL 850
            +  + E   +  L S ++  LQ      + G++H     N T+TGRLS++ PNLQN P  
Sbjct: 578  VECILEYRQLAKLNSTYVEGLQ--TYIDEKGKIHTRFVQNLTQTGRLSSQDPNLQNIPIR 635

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  ++R AF+ + P   L+ +DY Q+ELR+LAH+AN   M++AFK   D H+ TAM +
Sbjct: 636  TEEGRQVRSAFLPSHPEWKLLSSDYSQIELRVLAHMANDVHMIEAFKNNIDIHTNTAMRV 695

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +                 G   P     ++  +S RR+AK +NF I YG +  GL+++  
Sbjct: 696  F-----------------GIQNP-----EEVTSSMRRQAKAVNFGIVYGISDYGLSQNLN 733

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            +  ++AK+ +D +  E Q V  + E    E+R +++V TL  R R  P I S   + R+ 
Sbjct: 734  IPRKKAKEFIDRYLEEFQGVKDYMETIVAEARQNDYVETLFHRRRYLPEIHSSNFNIRSF 793

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER A+N+P+QG+AAD+   AM+E+ +    +    KLLLQVHDE+I E P E  E  ++
Sbjct: 794  AERTAMNSPIQGTAADILKVAMIELDRELTERNFQAKLLLQVHDELIFEVPEEEVESLQS 853

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +V E M        +L V L  D+    NWY AK
Sbjct: 854  LVEEVMENAV----SLSVPLKADSNIGNNWYEAK 883


>gi|398813590|ref|ZP_10572284.1| DNA polymerase I [Brevibacillus sp. BC25]
 gi|398038396|gb|EJL31560.1| DNA polymerase I [Brevibacillus sp. BC25]
          Length = 882

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/334 (35%), Positives = 180/334 (53%), Gaps = 30/334 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            I A+     +  L S +I  L    +  K  +VH   N   T TGRLS+  PNLQN P  
Sbjct: 577  IDAILIFRQLGKLRSTYIEGLT-KEIHTKTSKVHTLYNQATTATGRLSSTDPNLQNIPIR 635

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  KIR+AFI +  G  ++ ADY Q+ELRILAH++  ++++DAF+ G D H+RTAM++
Sbjct: 636  MEEGRKIREAFIPSEDGWYMLAADYSQIELRILAHISQDENLIDAFQKGMDIHTRTAMDV 695

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +                 G  K  V  L       RR+AK +NF I YG +  GL+++  
Sbjct: 696  F-----------------GVSKEEVTSLM------RRQAKAVNFGIVYGISDYGLSQNLN 732

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            ++ +EA   ++ +++    V  W +   ++++ D +V TLL R R  P I+S   + R+ 
Sbjct: 733  ITRKEAGDFIERYFDVFSGVKRWMDEIVQQAKADGYVTTLLNRRRYLPDIRSSNFNLRSF 792

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER A+NTP+QG+AADV   AM+ + +    K L  ++LLQVHDE++ E P    EV + 
Sbjct: 793  AERTAMNTPIQGTAADVIKLAMIRMQEAIEEKGLASRMLLQVHDELVFEVPENELEVMRK 852

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +V E M        +L V L VD    + WY AK
Sbjct: 853  LVPEVMESAL----SLNVPLKVDVSDGRTWYDAK 882


>gi|217977571|ref|YP_002361718.1| DNA polymerase I [Methylocella silvestris BL2]
 gi|217502947|gb|ACK50356.1| DNA polymerase I [Methylocella silvestris BL2]
          Length = 1013

 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/306 (38%), Positives = 161/306 (52%), Gaps = 24/306 (7%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S V+ + GRVH S  +  T TGRLS+  PNLQN P   +   KIR+AFIA PG  LI AD
Sbjct: 727  SYVNPETGRVHTSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRKAFIAPPGRKLISAD 786

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+A+   +  AF    D H+ TA  M+      V           E  PP
Sbjct: 787  YSQIELRLLAHIADISQLRAAFAENLDIHAMTASEMF-----GVPV---------EGMPP 832

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       RR+AK +NF I YG +  GLA    +  EEA   +  ++     +  + 
Sbjct: 833  ---------EVRRRAKAINFGIIYGISAFGLANQLAIPREEAGAYIKRYFERFPGIRAYM 883

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            +A K+ +R + +V T+ GR   +P I +   S+R   ERAAIN P+QGSAAD+   AM+ 
Sbjct: 884  DATKQFARENGYVTTIFGRKCHYPRITASNPSERAFNERAAINAPIQGSAADIIRRAMVR 943

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            + +      L  ++LLQVHDE++ E P E  +    +V + M    +    L V L VDA
Sbjct: 944  MDEALEKAGLSAQMLLQVHDELVFEAPDEEIDATIDVVRKVMVDAPHPFLQLAVPLQVDA 1003

Query: 1114 KCAQNW 1119
            K AQNW
Sbjct: 1004 KAAQNW 1009



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 115/309 (37%), Gaps = 66/309 (21%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSG---PEADFGNGKSCIW--VDLLDG--GG 421
           + A DTE + +D  Q   V  G  +C +       P    G G   ++   DL+ G    
Sbjct: 423 IIAIDTETSSLDPMQAELV--GLSLCLAPGRAAYVPLRHRGEGAGDLFGGADLVPGQLDS 480

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
            + L    P  E P + K+  N  FD  VL   G++++    DT+ ++ + D+       
Sbjct: 481 DETLARLKPMLEAPDVLKIAQNAKFDQLVLAQRGIRLAPVD-DTLLLSYVLDA------- 532

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
                                     G TD G    +  +  FG R ++    AG   T 
Sbjct: 533 --------------------------GRTDHGM--DVLAEKYFGHRPIQFGAVAGSGRTF 564

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
                  R   +    YSA D+  TL+L++ LK +L              + M   Y+  
Sbjct: 565 I---GFARVALDKATEYSAEDADVTLRLWRVLKPRLA------------AERMSAVYETL 609

Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            +P  E L +ME  G+ +DR  LS      R   E A +  R  A       +  N+GS 
Sbjct: 610 ERPMVETLARMERRGVSIDRAILS------RLSGEFAQDMARLEAVIFELAGESFNLGSP 663

Query: 662 TQLRQLLFG 670
            QL  +LFG
Sbjct: 664 KQLGDILFG 672


>gi|414075154|ref|YP_007000371.1| DNA polymerase I [Lactococcus lactis subsp. cremoris UC509.9]
 gi|413975074|gb|AFW92538.1| DNA polymerase I [Lactococcus lactis subsp. cremoris UC509.9]
          Length = 877

 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 184/345 (53%), Gaps = 35/345 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  + + I  +  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 559  AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 618

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P   ++  KIR+AF+    + L+ +DY Q+ELR+LAH++  + ++DAFK G
Sbjct: 619  SVDPNLQNIPVRLEEGRKIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHG 678

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ T+M ++      +E  +                 D  A++RR AK +NF + YG
Sbjct: 679  ADIHTSTSMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 716

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E+R    V T+  R R+ P 
Sbjct: 717  ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 776

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            I +   + R   ER AIN+P+QGSAAD+   AM+ + +    ++   KLLLQVHDE+IL+
Sbjct: 777  INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDRALTERQSKSKLLLQVHDEIILD 836

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E  E  +A+V E M +       L V L VD    + WY AK
Sbjct: 837  VPLEELEEIQALVKETMEEAI----ELAVPLKVDENTGKTWYEAK 877


>gi|410464497|ref|ZP_11317926.1| DNA polymerase I [Desulfovibrio magneticus str. Maddingley MBC34]
 gi|409982399|gb|EKO38859.1| DNA polymerase I [Desulfovibrio magneticus str. Maddingley MBC34]
          Length = 879

 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 184/369 (49%), Gaps = 40/369 (10%)

Query: 759  DSGCTEETEYKGAVASNNKIFATEQEARE----ACDAISALCEVCSIDSLISNFILPLQG 814
            D G     +  G  AS      T Q+A E    A   +  + E   ++ L S ++ P+  
Sbjct: 545  DLGLKAHGKTPGGAAS------TSQDALERLAGAHPLVDRILEFRKLEKLRSTYLAPMPA 598

Query: 815  SNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
              ++  + R+H +LN + T TGRLS+  PNLQN P   +   ++R  F A PGN L+ AD
Sbjct: 599  --LADADSRIHTTLNNMATATGRLSSSNPNLQNIPIRGEFGRRMRDCFTAGPGNQLVAAD 656

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAHL+   ++LDAF  G D H+RTA  ++                   DKP 
Sbjct: 657  YSQIELRVLAHLSGEPALLDAFAHGADIHARTAAILF-------------------DKPE 697

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
              +  D    ERR+AK +NF + YG  P  L+RD  + ++ AK  +  ++     +  + 
Sbjct: 698  EAIAPD----ERRQAKTINFGLLYGMGPQKLSRDLGIKLDAAKAFIARYFERLPGLSAFY 753

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E   + ++ D  V TL GR R  P I S      +   R AINT VQG AAD+   AML 
Sbjct: 754  EGIVEAAKRDGFVTTLAGRRRLLPDISSANSQLSSQARRQAINTVVQGGAADIIKMAMLA 813

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
             + +A L  LG  L+LQ+HDE++LE P  +A+ A A +   M+    G   L V L VD 
Sbjct: 814  AAGDAELAGLGAVLVLQIHDELLLETPEAAAKDAGARLAGLMT----GVITLAVPLEVDW 869

Query: 1114 KCAQNWYSA 1122
               + W  A
Sbjct: 870  GTGRTWGEA 878


>gi|406673495|ref|ZP_11080716.1| DNA polymerase I [Bergeyella zoohelcum CCUG 30536]
 gi|405585960|gb|EKB59752.1| DNA polymerase I [Bergeyella zoohelcum CCUG 30536]
          Length = 938

 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/334 (35%), Positives = 173/334 (51%), Gaps = 33/334 (9%)

Query: 792  ISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNINTE-TGRLSARRPNLQNQP 848
            I  + E  +   L S ++  LP Q S +   +GRVH S +  T  TGRL++  PNLQN P
Sbjct: 634  IPLILEYRTYQKLKSTYVDALPTQISKI---DGRVHTSFSQTTAATGRLASLNPNLQNIP 690

Query: 849  ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
               +   +IR AF A  G  +I ADY Q+ELR++A ++  K+M++AF+ G D H+ TA  
Sbjct: 691  IRTERGQQIRGAFRAEKGKKIISADYSQIELRLIAEISGEKNMIEAFQKGEDIHASTAAK 750

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                    K P+    +   ++R +AK +NF I YG+    LA   
Sbjct: 751  LF--------------------KIPI---DEVNKTQRSQAKTVNFGIIYGQGAFALAEQT 787

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S  E+K+ +D ++     +  W  A+ K++R   +V TLLGR R    I+S     R+
Sbjct: 788  GLSRAESKQMIDAYFQTYPTMKEWMTAQVKKARELGYVETLLGRKRHLKDIQSNNFVVRS 847

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
            H ER A+N P+QGSAAD+   AM+EISK  + +    K+LLQVHDE+I E P E  E   
Sbjct: 848  HAERNAVNAPIQGSAADIIKIAMIEISKKLKEENRATKMLLQVHDELIFEAPIEEVEAVT 907

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            A++  CM           V L V+     +W  A
Sbjct: 908  ALITSCMENAVKTT----VPLLVEVGVGDHWLEA 937



 Score = 47.0 bits (110), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
           F PFFE  +I K+ HN+ +D  VL+NYG+   G   DTM    L +   R
Sbjct: 415 FKPFFEAKTIMKIAHNFKYDYKVLKNYGVHFDGVLFDTMIAHYLLNPDGR 464


>gi|259047059|ref|ZP_05737460.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
 gi|259036109|gb|EEW37364.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
          Length = 884

 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 182/346 (52%), Gaps = 36/346 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCSLNIN-TETGRLS 838
            A D +  L     I  LI  +  +  L  + V G      ++G++H     N T+TGRLS
Sbjct: 565  AVDVLEKLAHQAPIVELILEYRQLAKLNSTYVEGLQAYIQEDGKIHTRFIQNLTQTGRLS 624

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGN-SLIVADYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P   K+  +IR AF+    +  ++ +DY Q+ELR+LAH+A  K M++AFK 
Sbjct: 625  SVDPNLQNIPIRTKEGRRIRYAFLPEHDDWKILSSDYSQIELRVLAHIAGDKHMIEAFKN 684

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
              D H+ TAM ++                 G   P      D  +  RR+AK +NF I Y
Sbjct: 685  NVDIHTNTAMRVF-----------------GISNP-----DDVTSEMRRQAKAVNFGIVY 722

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + AK+ +D +  E Q V  + E+  KE+R  ++V TL  R R  P
Sbjct: 723  GISDYGLSQNLNISRKRAKEFIDRYLEEFQGVKDFMESIVKEAREKDYVETLFHRRRYLP 782

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVIL 1077
             I S   + R+  ER A+N+P+QGSAAD+   AM+E+ +  R ++    LLLQVHDE+I 
Sbjct: 783  DIHSSNFNLRSFAERTAMNSPIQGSAADILKMAMIELDREMRERKFKANLLLQVHDELIF 842

Query: 1078 EGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            E P +  E  +++V   M        +L+V L  D+    NW+ AK
Sbjct: 843  EVPQDELESLQSLVEGVMENAV----SLKVPLRADSNVGDNWFEAK 884


>gi|395764875|ref|ZP_10445495.1| DNA polymerase I [Bartonella sp. DB5-6]
 gi|395413692|gb|EJF80154.1| DNA polymerase I [Bartonella sp. DB5-6]
          Length = 968

 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/307 (38%), Positives = 163/307 (53%), Gaps = 26/307 (8%)

Query: 815  SNVSGKNGRVHC--SLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA 872
            S +  K GRVH   SL I T TGRLS+  PNLQN P    +  KIR AFIA  G+ L+ A
Sbjct: 682  SYIFPKTGRVHTNYSLAITT-TGRLSSSEPNLQNIPVRTAEGRKIRTAFIAPKGHVLLSA 740

Query: 873  DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKP 932
            DY Q+ELRILAH+A+  ++ +AF  G D H+ TA  M+           V +E    D  
Sbjct: 741  DYSQIELRILAHIADITALKEAFAQGQDIHAITASQMF----------GVSIEGMSSDI- 789

Query: 933  PVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
                        RR+AK +NF I YG +  GLA    +S +EA + + L++     +  +
Sbjct: 790  ------------RRRAKAINFGIIYGISAFGLANQLGLSRQEAGRYIQLYFERFPGIKDY 837

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             E  K   R + +V T+ GR   +P IK+     R+  ERAAIN P+QGSAAD+   AM+
Sbjct: 838  MEKTKTFVRQNGYVETIFGRRVHYPEIKAANLQIRSFNERAAINAPIQGSAADIIRRAMI 897

Query: 1053 EISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
            ++      ++L  K+LLQVHDE+I E P   +E   A+V + M        +L V L V 
Sbjct: 898  QMEGALEKEKLSAKMLLQVHDELIFEVPENESEKTMAVVKKVMENATMPALSLSVPLEVK 957

Query: 1113 AKCAQNW 1119
               AQNW
Sbjct: 958  VMVAQNW 964


>gi|354594732|ref|ZP_09012769.1| DNA polymerase I [Commensalibacter intestini A911]
 gi|353671571|gb|EHD13273.1| DNA polymerase I [Commensalibacter intestini A911]
          Length = 927

 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/308 (37%), Positives = 170/308 (55%), Gaps = 28/308 (9%)

Query: 816  NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
             ++ K GRVH S N + T TGRLS+  PNLQN P   ++  KIR AFIA PG+ L+ ADY
Sbjct: 646  QINPKTGRVHTSFNMVGTVTGRLSSTDPNLQNIPIRSEEGGKIRAAFIAAPGHVLVSADY 705

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+AN   + ++F  G D H+RTA  ++      +E         G D    
Sbjct: 706  SQIELRLLAHVANIPQLKNSFIHGEDIHARTASEVF---NTPIE---------GMD---- 749

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            PL+       RR+AK +NF I YG +  GL +   VS   AK+ +D ++    E+ T+ +
Sbjct: 750  PLV-------RRQAKAINFGIIYGISAFGLGKQLGVSAGVAKQYIDTYFARYPEIKTYMQ 802

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              ++E++ + +V T  GR      I++    QR + ER AIN P+QG AAD+   AML++
Sbjct: 803  TTQEEAKENGYVLTPFGRKCWVSGIQTAKGPQRAYAERQAINAPLQGGAADIIKSAMLDM 862

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
            ++  + + L  K+LLQVHDE++ E   E A+    +  E M K       L + L V+A 
Sbjct: 863  NQAIKEQALQAKMLLQVHDELLFEVKEEDAKKLVKLAKEVMEKTV----QLSIPLVVEAG 918

Query: 1115 CAQNWYSA 1122
              +NW  A
Sbjct: 919  IGKNWSEA 926


>gi|347732571|ref|ZP_08865648.1| DNA polymerase I, thermostable [Desulfovibrio sp. A2]
 gi|347518684|gb|EGY25852.1| DNA polymerase I, thermostable [Desulfovibrio sp. A2]
          Length = 872

 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/332 (34%), Positives = 176/332 (53%), Gaps = 26/332 (7%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            + A+ E   ++ L S ++ PL    +    GR+H + N + T TGRLS+  PNLQN P  
Sbjct: 565  VDAILEFRKLEKLRSTYLEPL--PRLVDDAGRIHTTFNQLATATGRLSSSNPNLQNIPVR 622

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
                 ++R  F A PG  L+ ADY Q+ELR+LAH++   ++L AF+ G D HSRTA  +Y
Sbjct: 623  GDLGRRMRTCFTAAPGLRLVSADYSQVELRVLAHMSQDPTLLAAFREGADIHSRTASLLY 682

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
               ++ V T Q                       RR AK +NF + YG  P  LA++ ++
Sbjct: 683  DVAQDQVSTDQ-----------------------RRNAKTINFGLIYGMGPQKLAQELRI 719

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
             + EAK  ++ ++++ Q++  + +  +  +R   +V T+ GR R  P I S     ++  
Sbjct: 720  PLTEAKAFIERYFSKLQKLRAFYDEAETTARELGYVTTMAGRRRLLPEIHSENTQLKSQA 779

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAI 1090
             R AINT +QGSAAD+   AML    +  L+ L  +L+LQVHDE++LE P+++A  A   
Sbjct: 780  RRQAINTLIQGSAADIIKLAMLAAHADPDLRALNARLILQVHDELLLEVPADNAPAAGER 839

Query: 1091 VVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            +   MS    G   L V L+VD    +NW  A
Sbjct: 840  LAALMSGVRPGGVALDVPLAVDWGQGENWGVA 871


>gi|424916040|ref|ZP_18339404.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM597]
 gi|392852216|gb|EJB04737.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM597]
          Length = 999

 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/308 (38%), Positives = 161/308 (52%), Gaps = 30/308 (9%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  +  RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY 
Sbjct: 713  VHAETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYS 772

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF+ G D H+ TA  M+         G  +    GE      
Sbjct: 773  QIELRVLAHVADIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------ 817

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+
Sbjct: 818  --------VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMES 869

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            RK  +R   +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM+ + 
Sbjct: 870  RKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIRME 929

Query: 1056 KNARLKELGW----KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSV 1111
                L E+G     ++LLQVHDE+I E   E  E A  I+V  M         +RV L V
Sbjct: 930  PA--LAEVGLGDRVRMLLQVHDELIFEVEDEDVEKAMPIIVSVMENATMPALEMRVPLRV 987

Query: 1112 DAKCAQNW 1119
            DA+ A NW
Sbjct: 988  DARAASNW 995



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 71/256 (27%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED ++ KV  N  +D  +++ YG++   F  DTM ++ + D+     G 
Sbjct: 465 RDALPRLKSLLEDAAVLKVAQNLKYDYLLMQRYGIETRSFD-DTMLISYVLDAG---TGA 520

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  KD+ G         +GK +
Sbjct: 521 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 548

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L                +   Y+
Sbjct: 549 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 591

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
              +P   +L +ME  G+ VDR+ LS +     +  AR E E  V    ++         
Sbjct: 592 RLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERF--------- 642

Query: 655 YMNVGSDTQLRQLLFG 670
             N+GS  QL  +LFG
Sbjct: 643 --NIGSPKQLGDILFG 656


>gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus]
          Length = 834

 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/345 (34%), Positives = 183/345 (53%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + ++ PL  S V  + GR+H   N   T TGRLS
Sbjct: 519  AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G +L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 578  SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                PL+       RR AK +NF + YG
Sbjct: 638  KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 674

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 675  MSAHRLSQELSIPYEEASAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 734

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            + +  +S R   ER A N PVQG+AAD+   AM+++    RL+++G ++LLQVHDE++LE
Sbjct: 735  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLRQMGARMLLQVHDELLLE 792

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P   AE   A+  E M K +     L V L V+A   ++W SAK
Sbjct: 793  APQARAEEVAALAKEAMEKAY----PLAVPLEVEAGIGEDWLSAK 833


>gi|146319032|ref|YP_001198744.1| DNA polymerase I [Streptococcus suis 05ZYH33]
 gi|146321240|ref|YP_001200951.1| DNA polymerase I [Streptococcus suis 98HAH33]
 gi|253752097|ref|YP_003025238.1| DNA polymerase I [Streptococcus suis SC84]
 gi|253753922|ref|YP_003027063.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|253755203|ref|YP_003028343.1| DNA polymerase I [Streptococcus suis BM407]
 gi|386578217|ref|YP_006074623.1| DNA polymerase I [Streptococcus suis GZ1]
 gi|386582296|ref|YP_006078700.1| DNA polymerase I [Streptococcus suis SS12]
 gi|386588483|ref|YP_006084884.1| DNA polymerase I [Streptococcus suis A7]
 gi|403061853|ref|YP_006650069.1| DNA polymerase I [Streptococcus suis S735]
 gi|145689838|gb|ABP90344.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
            [Streptococcus suis 05ZYH33]
 gi|145692046|gb|ABP92551.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
            [Streptococcus suis 98HAH33]
 gi|251816386|emb|CAZ52017.1| DNA polymerase I [Streptococcus suis SC84]
 gi|251817667|emb|CAZ55415.1| DNA polymerase I [Streptococcus suis BM407]
 gi|251820168|emb|CAR46523.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|292558680|gb|ADE31681.1| DNA polymerase I [Streptococcus suis GZ1]
 gi|353734442|gb|AER15452.1| DNA polymerase I [Streptococcus suis SS12]
 gi|354985644|gb|AER44542.1| DNA polymerase I [Streptococcus suis A7]
 gi|402809179|gb|AFR00671.1| DNA polymerase I [Streptococcus suis S735]
          Length = 878

 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 181/336 (53%), Gaps = 32/336 (9%)

Query: 791  AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
             +S + E   I  L S +++ LQ + +  ++G++H   +   T+TGRLS+  PNLQN P 
Sbjct: 572  VVSKILEYRQITKLQSTYVVGLQDAIL--EDGKIHTRYVQDLTQTGRLSSTDPNLQNIPV 629

Query: 850  -LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
             LE+ R  IR+AF+    NS+++A DY Q+ELR+LAH++  + +++AF+ G D H+ TAM
Sbjct: 630  RLEQGRL-IRKAFVPSLENSVLLASDYSQIELRVLAHISQDQHLIEAFQQGADIHTSTAM 688

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
             ++      +E  + +                   ++RR AK +NF + YG +  GL+ +
Sbjct: 689  RVF-----GIEKAEYVT-----------------PNDRRNAKAVNFGVVYGISDFGLSNN 726

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ +EAK  +D ++     +  + E   +E+R   +V T+  R R  P I S   + R
Sbjct: 727  LGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVR 786

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVA 1087
            N  ER AIN+P+QGSAAD+   AM+ + K      L  ++LLQVHDE++LE P    E  
Sbjct: 787  NFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETV 846

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            KA+V E M        +L V L  D      WY AK
Sbjct: 847  KAMVKETMESAI----SLSVPLIADENEGSTWYEAK 878


>gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95]
 gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95]
          Length = 896

 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 190/357 (53%), Gaps = 41/357 (11%)

Query: 769  KGAVASNNKIFATEQEAREACD----AISALCEVCSIDSLISNFILPLQGSNVSGKNGRV 824
            KG   + +  ++T+ ++ EA       I  L E      L+S +I+ +    V+ K GRV
Sbjct: 573  KGKRKTKSGSYSTDADSLEALRDEHPIIEKLLEYRKYQKLLSTYIIAIPKL-VNKKTGRV 631

Query: 825  HCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRIL 882
            H S N   T TGRLS+  PNLQN P  E+D  +IR    A   + +++ ADY Q+ELR+L
Sbjct: 632  HTSFNQTGTATGRLSSSEPNLQNLPIREEDGERIRSTVKAQKDDYVLLSADYSQIELRVL 691

Query: 883  AHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFA 942
            AHL N +++++AF  G D H+ TA  ++      V+                  + D   
Sbjct: 692  AHLTNDETLINAFNNGEDIHALTAAAIF-----GVK------------------IDDVDY 728

Query: 943  SERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRI 1002
            + RR  K++NFS+ YG +P GLA + K+ VE+AK  ++ ++   Q+V  +QE+  K +  
Sbjct: 729  NMRRVGKVVNFSLVYGSSPYGLAENLKIPVEDAKDFMNRYFKTYQKVKEYQESSLKIATQ 788

Query: 1003 DNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKE 1062
              +V T+ GR R    IK    + ++ ++R  INTP+QGSAAD+   AM+ + K    KE
Sbjct: 789  KGYVETIFGRKRFLKNIK----TGKSELKRIVINTPIQGSAADIMKLAMINLYKKLP-KE 843

Query: 1063 LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
               KL+LQVHDEV++E P +  E  K +V +CM         L + L VD    +NW
Sbjct: 844  --AKLILQVHDEVVIELPEKIVEETKKMVQDCMENAV----KLNIPLKVDISVGKNW 894


>gi|451940050|ref|YP_007460688.1| DNA polymerase I [Bartonella australis Aust/NH1]
 gi|451899437|gb|AGF73900.1| DNA polymerase I [Bartonella australis Aust/NH1]
          Length = 969

 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/316 (37%), Positives = 165/316 (52%), Gaps = 32/316 (10%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        + GRVH S ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 681  LPHYILP--------RTGRVHTSYSLATTSTGRLSSSEPNLQNIPVRTAEGRKIRAAFIA 732

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+SL+ ADY Q+ELR+LAH+A+  ++ +AF  G D H+ TA  M+           V 
Sbjct: 733  PRGHSLLSADYSQIELRVLAHIADITALKEAFAQGKDIHTITASQMF----------GVA 782

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
            +E    D              RR+AK +NF I YG +  GLA    +S +EA   + L++
Sbjct: 783  IEGMPSDI-------------RRRAKAINFGIIYGISAFGLANQLGISRKEAGHYIQLYF 829

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R   +V T+ GR   +P IK+     R+  ERAAIN P+QGSA
Sbjct: 830  ERFPGIKEYMEEIKIFARQHGYVETIFGRRIHYPEIKAANSQVRSFNERAAINAPIQGSA 889

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN 1103
            AD+   AM++I      ++L  K+LLQVHDE+I E P    E    +V + M        
Sbjct: 890  ADIIRRAMIQIETALEKEKLSAKMLLQVHDELIFEVPEAEIEKTAILVKKVMETATMPAL 949

Query: 1104 NLRVDLSVDAKCAQNW 1119
            +L V L V    AQNW
Sbjct: 950  SLSVPLEVKVVTAQNW 965



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 128/310 (41%), Gaps = 74/310 (23%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGP-EADFGNGKSCIWVDLLDGGGR------- 422
           A DTE   +D  Q       E++ FS+   P +A +   +     D L G GR       
Sbjct: 383 AFDTETTSLDPMQ------AELVGFSLALRPNKAAYIPLEHVEGRDDLLGDGRIAAQIET 436

Query: 423 -DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
              L    P  E+ ++ K+  N  +D  +++ +G+ +  F  DTM ++ + D+   T G 
Sbjct: 437 QKALALLKPILENQAVLKIGQNIKYDWLMMKQHGIVMRPFD-DTMLLSYVLDAGTLTHG- 494

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
                      V+S+           G+T       IS KD+    K        KI++ 
Sbjct: 495 ---------MDVLSQH--------WLGHT------PISYKDLTHNGK--------KITSF 523

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
           A V+  Q         Y+A D+  TL+L++ LK +L+             + +   Y+  
Sbjct: 524 AQVDLKQAT------LYAAEDADVTLRLWEVLKPQLV------------AQGLTKIYERL 565

Query: 602 WQPFGEILVKMETEGMLVDREYLSEIE-KVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
            +P  E+L KME  G+LVDR+ LS +  ++ARA        ++    K        NV S
Sbjct: 566 DRPLIEVLAKMEERGVLVDRQILSRLSGELARAASVLEEEIYQLVGEK-------FNVAS 618

Query: 661 DTQLRQLLFG 670
             QL  ++FG
Sbjct: 619 PKQLGDIIFG 628


>gi|218886806|ref|YP_002436127.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757760|gb|ACL08659.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 872

 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/332 (34%), Positives = 176/332 (53%), Gaps = 26/332 (7%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            + A+ E   ++ L S ++ PL    +    GR+H + N + T TGRLS+  PNLQN P  
Sbjct: 565  VDAILEFRKLEKLRSTYLEPL--PRLVDGAGRIHTTFNQLATATGRLSSSNPNLQNIPVR 622

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
                 ++R  F A PG  L+ ADY Q+ELR+LAH++   ++L AF+ G D HSRTA  +Y
Sbjct: 623  GDLGRRMRTCFTAAPGLRLVSADYSQVELRVLAHMSQDPTLLAAFREGADIHSRTASLLY 682

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
               ++ V T Q                       RR AK +NF + YG  P  LA++ ++
Sbjct: 683  DVAQDQVSTDQ-----------------------RRNAKTINFGLIYGMGPQKLAQELRI 719

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
             + EAK  ++ ++++ Q++  + +  +  +R   +V T+ GR R  P I S     ++  
Sbjct: 720  PLTEAKAFIERYFSKLQKLREFYDEAETTARELGYVTTMAGRRRLLPEIHSENTQLKSQA 779

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAI 1090
             R AINT +QGSAAD+   AML    +  L+ L  +L+LQVHDE++LE P+++A  A   
Sbjct: 780  RRQAINTLIQGSAADIIKLAMLAAHADPELRALNARLILQVHDELLLEVPADNAPAAGER 839

Query: 1091 VVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            +   MS    G   L V L+VD    +NW  A
Sbjct: 840  LAAIMSGVRPGGVALDVPLAVDWGQGENWGVA 871


>gi|116513094|ref|YP_812001.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
 gi|116108748|gb|ABJ73888.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
          Length = 877

 Score =  191 bits (484), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 183/345 (53%), Gaps = 35/345 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  + + I  +  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 559  AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 618

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P   ++  KIR+AF+    + L+ +DY Q+ELR+LAH++  + ++DAFK G
Sbjct: 619  SVDPNLQNIPVRLEEGRKIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHG 678

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ T+M ++      +E  +                 D  A++RR AK +NF + YG
Sbjct: 679  ADIHTSTSMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 716

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E+R    V T+  R R+ P 
Sbjct: 717  ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 776

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            I +   + R   ER AIN+P+QGSAAD+   AM+ + K    ++   KLLLQVHDE+IL+
Sbjct: 777  INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALTERQSKSKLLLQVHDEIILD 836

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E  E  + +V E M +       L V L VD    + WY AK
Sbjct: 837  VPLEELEEIQVLVKETMEEAI----ELAVPLKVDENTGKTWYEAK 877


>gi|3041672|sp|P52026.2|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I
          Length = 876

 Score =  191 bits (484), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 171/305 (56%), Gaps = 29/305 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLE 878
             G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+E
Sbjct: 599  TGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIE 658

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+A   ++++AF+ G D H++TAM+++ H+                        +
Sbjct: 659  LRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIF-HVSE----------------------E 695

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + +   +
Sbjct: 696  DVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQ 755

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++S   
Sbjct: 756  EAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDLSVRL 815

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            R + L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 816  REERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQAV----TLRVPLKVDYHYGPT 871

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 872  WYDAK 876


>gi|347360119|ref|YP_389938.2| DNA polymerase I [Desulfovibrio alaskensis G20]
 gi|342906655|gb|ABB40243.2| DNA polymerase I [Desulfovibrio alaskensis G20]
          Length = 865

 Score =  191 bits (484), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 191/363 (52%), Gaps = 28/363 (7%)

Query: 761  GCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGK 820
            G    ++ KG  AS ++    +   +     I  + E   ++ L S ++ PL    ++ +
Sbjct: 529  GLKAGSKTKGGQASTSQAVLEKLAGKHPV--IDTILEYRKLEKLRSTYLEPL--PRLAQE 584

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            N R+H + N + T TGRLS+ +PNLQN P       ++R+ F A PGN L+ ADY Q+EL
Sbjct: 585  NDRIHTTFNQLATATGRLSSSQPNLQNIPVRGPMGQRMRRCFTAAPGNKLVAADYSQIEL 644

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAH++   +++++F    D HSRTA  +Y              +    D  P      
Sbjct: 645  RVLAHVSADPTLIESFTRNEDIHSRTAGLLY--------------DVTAADVTP------ 684

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                +RR AK +NF + YG  P  LA++ KV++ EAK+ ++ ++++   +  + +  ++ 
Sbjct: 685  ---DQRRNAKTINFGLIYGMGPQKLAQELKVTLNEAKEFIERYFSKLSHLKEFYDNVEQS 741

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +R    V TL GR R  P I S     R+   R AINT VQGSAAD+   AML+ + +  
Sbjct: 742  AREHGFVTTLAGRRRLLPEIHSDNNQLRSQARRQAINTVVQGSAADIIKIAMLKAAADET 801

Query: 1060 LKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            L++L   L+LQVHDE++LE P ++AE A   + + MS    G   L V L+VD     NW
Sbjct: 802  LQQLNAALILQVHDELLLEAPQDAAEAAAKRLADIMSSVRPGGAALDVPLAVDYGIGDNW 861

Query: 1120 YSA 1122
              A
Sbjct: 862  GQA 864


>gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains
            [Magnetospirillum magnetotacticum MS-1]
          Length = 926

 Score =  190 bits (483), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/310 (38%), Positives = 161/310 (51%), Gaps = 30/310 (9%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + ++   GRVH S  +  T TGRLS+  PNLQN P   ++  KIR AF+A PG  LI AD
Sbjct: 644  AQINPATGRVHTSYALAATTTGRLSSSDPNLQNIPIRTEEGRKIRHAFVAEPGKRLISAD 703

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR++AH+A  + + DAF  G D H+ TA  ++                       
Sbjct: 704  YSQIELRLVAHVAEIEGLRDAFADGADIHAITASQVFG---------------------- 741

Query: 934  VPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
            VPL  D   S  RR+AK +NF I YG +P GLA    +   EAK  ++ ++    E+ T+
Sbjct: 742  VPL--DGMDSALRRRAKAINFGIIYGISPFGLAAQLGIPQGEAKAYIEAYFARYPEIRTF 799

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             E  K+E+R    V TL GR    P IK    + R   ERAAIN P+QG AAD+   AM+
Sbjct: 800  MERTKEEAREKGFVTTLFGRKVFTPGIKDKNGAMRAFAERAAINGPIQGGAADIIKRAMI 859

Query: 1053 EISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
             +      + L  +LLLQVHDE++LE P +  E    +V   M         L V L V+
Sbjct: 860  RLPAALVAEGLKARLLLQVHDELVLEAPEDETEATVRVVKRVM----EAAATLSVPLLVE 915

Query: 1113 AKCAQNWYSA 1122
            A  A +W +A
Sbjct: 916  AGIADSWDAA 925


>gi|303248854|ref|ZP_07335103.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
 gi|302489723|gb|EFL49656.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
          Length = 874

 Score =  190 bits (483), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 124/367 (33%), Positives = 186/367 (50%), Gaps = 40/367 (10%)

Query: 761  GCTEETEYKGAVASNNKIFATEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSN 816
            G T + +  G  AS      T Q+A E        +  + E   ++ L S ++ PL    
Sbjct: 542  GLTPKGKTPGGAAS------TSQDALERLAGSNPLVDRILEFRKLEKLRSTYLDPL--PK 593

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++  +GR+H +LN + T TGRLS+  PNLQN P       ++R+ F+A PG +L+ ADY 
Sbjct: 594  LADADGRIHTTLNNMATATGRLSSSNPNLQNIPIRGPLGRRMRECFVAGPGKTLVAADYS 653

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAHL+   ++L AF AG D H+RTA  ++                   DKP   
Sbjct: 654  QIELRVLAHLSGEPALLSAFAAGADIHARTASLLF-------------------DKPEAE 694

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            +  D    ERR+AK +NF + YG  P  L+RD  + ++ AK  +  ++     +  + + 
Sbjct: 695  IGPD----ERRQAKTINFGLLYGMGPQKLSRDLGIKLDAAKAFIAKYFERLSGLSAFYDN 750

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              + ++   +V TL GR R  P I+S      +   R AINT VQG AAD+   AML   
Sbjct: 751  IVESAKTQGYVTTLAGRRRLLPDIESKNSQLASQARRQAINTVVQGGAADIIKMAMLAAH 810

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
            K+A LK  G  ++LQ+HDE++LE P ++A+ A   + + M     G   L V L VD   
Sbjct: 811  KDADLKRAGAVMVLQIHDELLLETPMDTADAAGKRLSDLMC----GVIKLAVPLVVDWGT 866

Query: 1116 AQNWYSA 1122
               W  A
Sbjct: 867  GHTWGQA 873


>gi|224476781|ref|YP_002634387.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421388|emb|CAL28202.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 876

 Score =  190 bits (483), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 120/334 (35%), Positives = 174/334 (52%), Gaps = 31/334 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPAL 850
            I  + E   +  L S +I  LQ   V   + R+H   N    +TGRLS+  PNLQN P  
Sbjct: 572  IDDILEYRQLSKLQSTYIEGLQ--KVIQNDHRIHTHFNQTLAQTGRLSSVDPNLQNIPVR 629

Query: 851  EKDRYKIRQAF-IAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AF  A PGN ++ ADY Q+ELR+LAH+   +SM+ AF+ G D H+ TAM +
Sbjct: 630  LEEGRRIRKAFKPAEPGNVILSADYSQIELRVLAHITQDESMIKAFREGHDIHTATAMKV 689

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +      VE  +V                D+    RR+AK +NF I YG +  GL++   
Sbjct: 690  F-----GVEPDEV----------------DSLM--RRQAKAVNFGIVYGISDYGLSQSLG 726

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            ++ + AK+ +D + +    V  +     K+++   +V TLL R R  P I S   ++R+ 
Sbjct: 727  ITRKAAKQFIDDYLDSFPGVKQYMSDIVKDAKAKGYVETLLHRRRYIPDITSRNFNRRSF 786

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER A+NTP+QGSAAD+   AM+   K  + K+    LLLQVHDE+I E P E  E   A
Sbjct: 787  AERTAMNTPIQGSAADIIKLAMVNFDKEIKNKDFHAHLLLQVHDELIFELPEEEVEAFSA 846

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             + + M        +L V L VD      WY AK
Sbjct: 847  FIEDIMDNAI----DLDVPLQVDTNYGPTWYDAK 876


>gi|46198998|ref|YP_004665.1| DNA polymerase I [Thermus thermophilus HB27]
 gi|46196622|gb|AAS81038.1| DNA polymerase I [Thermus thermophilus HB27]
          Length = 834

 Score =  190 bits (483), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 120/345 (34%), Positives = 182/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + ++ PL  S V  + GR+H   N   T TGRLS
Sbjct: 519  AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G +L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 578  SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                PL+       RR AK +NF + YG
Sbjct: 638  KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 674

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 675  MSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 734

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            + +  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 735  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLREMGARMLLQVHDELLLE 792

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P   AE   A+  E M K +     L V L V+    ++W SAK
Sbjct: 793  APQARAEEVAALAKEAMEKAY----PLAVPLEVEVGIGEDWLSAK 833


>gi|220904332|ref|YP_002479644.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
            str. ATCC 27774]
 gi|219868631|gb|ACL48966.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
            str. ATCC 27774]
          Length = 921

 Score =  190 bits (483), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/332 (35%), Positives = 177/332 (53%), Gaps = 26/332 (7%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPAL 850
            + ++ E   ++ + S ++ PL    +   NGR+H + N   T TGRLS+  PNLQN P  
Sbjct: 614  VDSVLEFRKLEKMRSTYLDPL--PRLMDGNGRIHTTFNQKATATGRLSSSNPNLQNIPVR 671

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
                 ++R  FIA PG++L+ ADY Q+ELR+LAH++  K++L+AF+ G D H+RTA  +Y
Sbjct: 672  GDLGKRMRTCFIANPGSALVSADYSQVELRVLAHMSQDKALLEAFRNGEDIHARTAALVY 731

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                + V   Q                       RR AK +NF + YG     L +D K+
Sbjct: 732  DLAPDQVSPDQ-----------------------RRNAKTINFGLIYGMGAQKLGQDLKI 768

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
            S  EAK+ +  +++    +  + ++ +  ++   +V TL GR R  P I S         
Sbjct: 769  STSEAKEFIARYFSRLTGLKEFYDSVEATAKRQGYVTTLGGRRRLLPDIHSPNGQAYALA 828

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAI 1090
             R AINT +QGSAAD+   AML ++++ +L+E   +LLLQVHDE++LE P  SA  A A 
Sbjct: 829  RRQAINTVIQGSAADIIKLAMLAVAEDEQLREHEARLLLQVHDELLLEVPEASARAAGAR 888

Query: 1091 VVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            V + MS    G   L V L VD    +NW +A
Sbjct: 889  VADLMSSVKPGGEPLSVPLVVDWGVGKNWGAA 920


>gi|408356302|ref|YP_006844833.1| DNA polymerase I [Amphibacillus xylanus NBRC 15112]
 gi|407727073|dbj|BAM47071.1| DNA polymerase I [Amphibacillus xylanus NBRC 15112]
          Length = 880

 Score =  190 bits (483), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 111/320 (34%), Positives = 180/320 (56%), Gaps = 35/320 (10%)

Query: 812  LQGSNVSG------KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAV 864
            LQ + + G       + ++H   N   T+TGRLS+  PNLQN P   ++  KIR+AFI  
Sbjct: 588  LQSTYIEGLLKVIHDDKKIHTRFNQALTQTGRLSSVDPNLQNIPIRLEEGRKIRKAFIPS 647

Query: 865  PGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              + +I+A DY Q+ELR+LAH+AN + +++AFK+  D H++TAM+++    + V++    
Sbjct: 648  ENDWIILAFDYSQIELRVLAHIANDEKLIEAFKSDRDIHTQTAMDVFNVTADEVDSLM-- 705

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
                                 RR+AK +NF I YG +  GL+++ K++ +EA+  +D ++
Sbjct: 706  ---------------------RRQAKAVNFGIVYGISDYGLSQNLKITRKEAQAFIDQYF 744

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 V  + +    ++++D +V TL+ R R  P I S   +QR+  ER A+NTP+QGSA
Sbjct: 745  VSYPGVKQYMDDIVHKAKLDGYVTTLMNRRRYLPEITSRNFNQRSFAERTAMNTPIQGSA 804

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN 1103
            AD+   AM+++    +      +LLLQVHDE+I+E P E A+    +V + M++      
Sbjct: 805  ADIIKKAMIDLDHALKAGNFEARLLLQVHDELIIEAPREEADKLLELVPKVMTETV---- 860

Query: 1104 NLRVDLSVDAKCAQNWYSAK 1123
             L V L VDA   ++WY AK
Sbjct: 861  TLNVPLKVDASQGESWYDAK 880


>gi|417858475|ref|ZP_12503532.1| DNA polymerase I [Agrobacterium tumefaciens F2]
 gi|338824479|gb|EGP58446.1| DNA polymerase I [Agrobacterium tumefaciens F2]
          Length = 998

 Score =  190 bits (483), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/301 (38%), Positives = 165/301 (54%), Gaps = 30/301 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  + +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ ADY Q+ELR+
Sbjct: 720  RVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRV 779

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   + +AF+ G D H+ TA  M+                       VP+  +  
Sbjct: 780  LAHVADIPQLRNAFENGIDIHAMTASEMFG----------------------VPV--EGM 815

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    ++  EA + +  ++     +  + EA K  +
Sbjct: 816  PSEVRRRAKAINFGIIYGISAFGLANQLSIARSEAGEYIKKYFERFPGIRDYMEATKAFA 875

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P I+S   S +   ERAAIN P+QGSAAD+   AM+ I      
Sbjct: 876  RENGYVETIFGRRAHYPEIRSSNPSVKAFNERAAINAPIQGSAADIIRRAMVRIEPALEA 935

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKA--IVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            ++L  ++LLQVHDE+I E   E AE+ K   +VV  M        ++RV L VDA+ A N
Sbjct: 936  EKLSARMLLQVHDELIFE--VEEAEIEKTLPVVVSVMENAAMPAISMRVPLQVDARAADN 993

Query: 1119 W 1119
            W
Sbjct: 994  W 994


>gi|319407881|emb|CBI81533.1| DNA polymerase I [Bartonella schoenbuchensis R1]
          Length = 968

 Score =  190 bits (483), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/316 (37%), Positives = 164/316 (51%), Gaps = 32/316 (10%)

Query: 808  FILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG 866
            +ILP        + GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA  G
Sbjct: 683  YILP--------ETGRVHTNYSLATTSTGRLSSSEPNLQNIPIRTPEGRKIRTAFIAPKG 734

Query: 867  NSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW 926
              L+ ADY Q+ELRILAH+AN  ++ +AF    D H+ TA  ++           V +E 
Sbjct: 735  CVLLSADYSQIELRILAHIANITALKEAFAQDQDIHAITASQIF----------GVAVEG 784

Query: 927  HGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNER 986
               D              RR+AK +NF I YG +  GLA    +S  EA + +D+++   
Sbjct: 785  MPSDI-------------RRRAKAINFGIIYGISAFGLANQLSISRNEASRYIDIYFERF 831

Query: 987  QEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADV 1046
              +  + E  K  +R   +V T+ GR   +P IK+     R   ERAAIN P+QGSAAD+
Sbjct: 832  PGIKDYMETTKSFARQHGYVETIFGRRIHYPEIKATNSQIRTFNERAAINAPIQGSAADI 891

Query: 1047 AMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLR 1106
               AM+++    + ++L  K+LLQVHDE+I E P   +E  K +V + M        +L 
Sbjct: 892  IRRAMIQMEGALKKEKLSAKMLLQVHDELIFEVPETESEKTKVLVTKVMENAAMPALSLS 951

Query: 1107 VDLSVDAKCAQNWYSA 1122
            V L V    AQNW  A
Sbjct: 952  VPLKVKVAAAQNWNEA 967



 Score = 48.5 bits (114), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 135/332 (40%), Gaps = 82/332 (24%)

Query: 415 DLLDGG-------GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMH 467
           DLL GG        + +L    P  ED ++ K+ +N  ++  +++ Y +    F  D M 
Sbjct: 422 DLLGGGCVVTQIETQKVLALLKPILEDQAVLKIGYNMKYNWLIMKQYAIVTQPFD-DIML 480

Query: 468 MARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR 527
           ++   D+   T           +R ++SE    ++               I+ KD+    
Sbjct: 481 ISYALDAGTSTH----------NRDILSERWLKHKP--------------IAYKDLTHNG 516

Query: 528 KLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGK 587
           K        KI++ A V+  Q         Y+A  +  TL+L++ LK +L+         
Sbjct: 517 K--------KITSFAQVDLKQAT------FYAAEGADITLRLWQVLKPQLV--------- 553

Query: 588 PVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIE-KVARAEQEAAVNRFRKWA 646
               + +   Y+   +P  E+L KME  G+LVDR+ LS +  ++A+A        ++   
Sbjct: 554 ---AQGVTKIYERLDRPLIEVLAKMEERGILVDRQILSRLSCELAQAALSLEEEIYQLVG 610

Query: 647 SKHCPDAKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGK 701
            +        N+ S  QL  +LFG     G   +K+   S   + +      E + AEG 
Sbjct: 611 ER-------FNIASPKQLSDILFGKMGLPGGVKTKNGQWSTSAQIL------EELAAEGH 657

Query: 702 KTPSK---FRNIT-LRSIGVD-LPTEMYTATG 728
             P K   +R +T L+S   D LP  +   TG
Sbjct: 658 TLPRKIVDWRQLTKLKSTYTDALPYYILPETG 689


>gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 999

 Score =  190 bits (483), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/308 (38%), Positives = 160/308 (51%), Gaps = 30/308 (9%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  +  RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY 
Sbjct: 713  VHAETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYS 772

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A    +  AF+ G D H+ TA  M+         G  +    GE      
Sbjct: 773  QIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------ 817

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+
Sbjct: 818  --------VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMES 869

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            RK  +R   +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM+ + 
Sbjct: 870  RKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIRME 929

Query: 1056 KNARLKELGW----KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSV 1111
                L E+G     ++LLQVHDE+I E   E  E A  I+V  M         +RV L V
Sbjct: 930  PA--LAEVGLGDRVRMLLQVHDELIFEVEDEDVEKAMPIIVSVMENATMPALEMRVPLRV 987

Query: 1112 DAKCAQNW 1119
            DA+ A NW
Sbjct: 988  DARAASNW 995



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 71/256 (27%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED ++ KV  N  +D  +++ YG++   F  DTM ++ + D+     G 
Sbjct: 465 RDALPRLKSLLEDAAVLKVAQNLKYDYLLMQRYGIETRSFD-DTMLISYVLDAG---TGA 520

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  KD+ G         +GK +
Sbjct: 521 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 548

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L                +   Y+
Sbjct: 549 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 591

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
              +P   +L +ME  G+ VDR+ LS +     +  AR E E  V    ++         
Sbjct: 592 RLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERF--------- 642

Query: 655 YMNVGSDTQLRQLLFG 670
             N+GS  QL  +LFG
Sbjct: 643 --NIGSPKQLGDILFG 656


>gi|347752916|ref|YP_004860481.1| DNA polymerase I [Bacillus coagulans 36D1]
 gi|347585434|gb|AEP01701.1| DNA polymerase I [Bacillus coagulans 36D1]
          Length = 875

 Score =  190 bits (483), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 114/320 (35%), Positives = 177/320 (55%), Gaps = 35/320 (10%)

Query: 812  LQGSNVSG------KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAV 864
            LQ + + G      ++G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+  
Sbjct: 583  LQSTYIEGLLKVVHQDGKVHTRFNQALTQTGRLSSTDPNLQNIPIRMEEGRKIRQAFVPS 642

Query: 865  PGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
                LI + DY Q+ELR+LAH++  + +++AF+ G D H++TAM ++ H++    T ++ 
Sbjct: 643  EEGWLIFSSDYSQVELRVLAHISGDEKLIEAFREGMDIHTKTAMEVF-HVKAEEVTSEM- 700

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
                                 RR+AK +NF I YG +  GL+++  +S +EA + +  ++
Sbjct: 701  ---------------------RRQAKTVNFGIVYGISDYGLSQNLGISRKEAGEFIKRYF 739

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 V  + +   +E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSA
Sbjct: 740  ASYPRVKEYMDEIVREAKQKGYVSTLLKRRRYLPEITSRNFNLRSFAERTAMNTPIQGSA 799

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN 1103
            AD+   AM++++K  + ++L  +LLLQVHDE+I E P E  EV K IV E M        
Sbjct: 800  ADIIKKAMIDMAKRLKKEKLRARLLLQVHDELIFEAPEEEIEVLKEIVPEVMEHAV---- 855

Query: 1104 NLRVDLSVDAKCAQNWYSAK 1123
            +L   L VD+     W+ AK
Sbjct: 856  DLAAPLKVDSAYGPTWFDAK 875


>gi|424873127|ref|ZP_18296789.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae WSM1455]
 gi|393168828|gb|EJC68875.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae WSM1455]
          Length = 999

 Score =  190 bits (483), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 159/302 (52%), Gaps = 30/302 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 719  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 778

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 779  LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 817

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK  +R
Sbjct: 818  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 875

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM++I     L 
Sbjct: 876  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPA--LV 933

Query: 1062 ELGW----KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQ 1117
            E+G     ++LLQVHDE+I E   E  E A  ++V  M         +RV L VDA+ A 
Sbjct: 934  EVGLADRVRMLLQVHDELIFEVEDEDVEKAMPVIVSVMENATMPALEMRVPLRVDARAAT 993

Query: 1118 NW 1119
            NW
Sbjct: 994  NW 995



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 71/255 (27%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           D L       ED S+ KV  N  +D  +++ YG++   F  DTM ++ + D+     G +
Sbjct: 466 DALPRLKALLEDESVLKVAQNLKYDYLLMKRYGIETRSFD-DTMLISYVLDAG---TGAH 521

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIST 540
            ++ L+                       E F+G   I  KD+ G         +GK + 
Sbjct: 522 GMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKANV 549

Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
              + ++ R        Y+A D+  TL+L+  LK +L                +   Y+ 
Sbjct: 550 TFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYER 592

Query: 601 YWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAKY 655
             +P   +L +ME  G+ VDR+ LS +     +  AR E E  V    ++          
Sbjct: 593 LERPLLPVLARMEARGITVDRQILSRLSGELAQSAARLEDEIYVLAGERF---------- 642

Query: 656 MNVGSDTQLRQLLFG 670
            N+GS  QL  +LFG
Sbjct: 643 -NIGSPKQLGDILFG 656


>gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium fabrum str. C58]
 gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium fabrum str. C58]
          Length = 998

 Score =  190 bits (483), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/309 (37%), Positives = 167/309 (54%), Gaps = 30/309 (9%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S +  +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ AD
Sbjct: 712  SYIHPETKRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSAD 771

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+A+   + +AF+ G D H+ TA  M+                       
Sbjct: 772  YSQIELRVLAHVADIPQLRNAFENGIDIHAMTASEMFG---------------------- 809

Query: 934  VPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
            VP+  +   SE RR+AK +NF I YG +  GLA    ++  EA   +  ++     +  +
Sbjct: 810  VPV--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIARSEAGDYIKKYFERFPGIRDY 867

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             EA K  +R + +V T+ GR   +P I+S   S +   ERAAIN P+QGSAAD+   AM+
Sbjct: 868  MEATKAFARENGYVETIFGRRAHYPEIRSSNPSVKAFNERAAINAPIQGSAADIIRRAMI 927

Query: 1053 EISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA--IVVECMSKPFNGKNNLRVDLS 1110
             I      ++L  ++LLQVHDE+I E   E AE+ K   +VV  M        ++RV L 
Sbjct: 928  RIEPALEAEKLSARMLLQVHDELIFE--VEEAEIEKTLPVVVSVMEDAAMPAISMRVPLK 985

Query: 1111 VDAKCAQNW 1119
            VDA+ A NW
Sbjct: 986  VDARAADNW 994



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 107/469 (22%), Positives = 182/469 (38%), Gaps = 143/469 (30%)

Query: 317 GQNKKASE--------NENSEKLEILRSKLASFYSNVMVVDNVSAAKKV----VWMLTNK 364
           G N+ AS          E S   ++  ++ A F +  +     +A + +    +W+   +
Sbjct: 335 GNNRPASAVAPAKRMIGEGSTPADLTTARQALFAATKIDTTAYTAIRDIATLDLWIAAAR 394

Query: 365 YKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL------- 417
              +V A DTE   +D  Q       E++ FS+     A   NGK     D+        
Sbjct: 395 EAGVV-AFDTETTSLDPMQ------AELVGFSL-----AIADNGKDASGTDIRAAYVPLT 442

Query: 418 --DGGGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVLENYGLKV 458
              G G DL ++        APF           ED ++ KV  N  +D  +++ +G+ +
Sbjct: 443 HKTGSGGDLFSDGIKLAEGQAPFAEALERLKDLLEDEAVLKVAQNLKYDYLLMKRHGVVM 502

Query: 459 SGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK- 517
             F  DTM ++ + ++ + T G  +L                           E ++G  
Sbjct: 503 RSFD-DTMLISYVLEAGKTTHGMDTLS--------------------------ERWLGHT 535

Query: 518 -ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKK 576
            I+ KD+ G         +GK S       + +       +Y+A D+  TL+L+ +LK +
Sbjct: 536 PIAYKDVTG---------SGKSSITFDFVNIDKA-----TAYAAEDADVTLRLWMALKPR 581

Query: 577 LLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVA 631
           L+             + +   Y+   +P   +L  ME  G+ VDR+ LS +     +K A
Sbjct: 582 LV------------SERLTKVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAA 629

Query: 632 RAEQEA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLP 683
             E+E    A  RF              N+GS  QL  +LFG     G   +K    S  
Sbjct: 630 SFEEEIYELAGERF--------------NIGSPKQLGDILFGRMGLPGGSKTKTGQWSTS 675

Query: 684 IERIFKVPNTEGVIAEGKKTPSK---FRNIT-LRSIGVD-LPTEMYTAT 727
            + +      E + AEG + P K   +R +T L+S   D LP+ ++  T
Sbjct: 676 AQVL------EDLAAEGAELPRKIVDWRQLTKLKSTYTDALPSYIHPET 718


>gi|410110888|dbj|BAM64800.1| DNA polymerase I [Thermus thermophilus]
          Length = 834

 Score =  190 bits (482), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 182/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + ++ PL  S V  + GR+H   N   T TGRLS
Sbjct: 519  AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G +L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 578  SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                PL+       RR AK +NF + YG
Sbjct: 638  KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 674

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 675  MSAHRLSQELSIPYEEASAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 734

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            + +  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 735  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLREMGARMLLQVHDELVLE 792

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P + A+   A+  E M     G   L V L V+    ++W SAK
Sbjct: 793  APKDRAQEVAALAKEVM----EGVYPLAVPLEVEVGIGEDWLSAK 833


>gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8]
 gi|62298349|sp|P52028.2|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth
            polymerase 1
 gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8]
          Length = 834

 Score =  190 bits (482), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 120/345 (34%), Positives = 182/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + ++ PL  S V  + GR+H   N   T TGRLS
Sbjct: 519  AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G +L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 578  SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                PL+       RR AK +NF + YG
Sbjct: 638  KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 674

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 675  MSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 734

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            + +  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 735  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLREMGARMLLQVHDELLLE 792

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P   AE   A+  E M K +     L V L V+    ++W SAK
Sbjct: 793  APQARAEEVAALAKEAMEKAY----PLAVPLEVEVGMGEDWLSAK 833


>gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
 gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
          Length = 1009

 Score =  190 bits (482), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/305 (35%), Positives = 154/305 (50%), Gaps = 24/305 (7%)

Query: 816  NVSGKNGRVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
            ++    GR+H C    +T TGRLS+  PNLQN P   ++   IR AFIA PG  LI ADY
Sbjct: 724  HIDADTGRIHTCYSLASTSTGRLSSTEPNLQNIPIRTREGRMIRSAFIAAPGKKLISADY 783

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++  AF  G D H+ TA  M+                       V
Sbjct: 784  SQIELRVLAHMADIPALKHAFAEGLDIHAMTASEMFG----------------------V 821

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            P+ KD     RR+AK +NF I YG +  GL++   +  +EA   +  ++     +  + +
Sbjct: 822  PV-KDMPGEVRRRAKAINFGIIYGISAFGLSQQLGIPRQEAGDYIAKYFERFPGIRAYMD 880

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A + +   D HV TL GR   FP IK+   + R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 881  AMRSKVHEDGHVETLFGRKIHFPEIKTPKWNMRQFFERAAINAPIQGTAADIIRRAMVRV 940

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                    +  ++LLQVHDE++ E      E     V   M +         V L VDA+
Sbjct: 941  PAALEQAGVRARMLLQVHDELVFEADDSEVEATIKAVTRVMERAAEPAVAFSVPLKVDAR 1000

Query: 1115 CAQNW 1119
             AQNW
Sbjct: 1001 AAQNW 1005


>gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 876

 Score =  190 bits (482), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 171/305 (56%), Gaps = 29/305 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLE 878
             G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+E
Sbjct: 599  TGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIE 658

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+A   ++++AF+ G D H++TAM+++ H+                        +
Sbjct: 659  LRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIF-HVSE----------------------E 695

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + +   +
Sbjct: 696  DVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQ 755

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++S   
Sbjct: 756  EAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDLSVRL 815

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            R + L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 816  REERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQAV----ALRVPLKVDYHYGPT 871

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 872  WYDAK 876


>gi|210077509|gb|ACJ07019.1| PolI [Thermus sp. Tp10.A2]
          Length = 833

 Score =  190 bits (482), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 128/349 (36%), Positives = 180/349 (51%), Gaps = 35/349 (10%)

Query: 780  ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
            +T Q A EA      + E+      +  L S ++ PL    V  + GR+H   N   T T
Sbjct: 513  STAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLP-RLVHPRTGRLHTRFNQTATAT 571

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+  PNLQN P       +IR+AF+A  G  L+ ADY Q+ELR+LAHL+  +++   
Sbjct: 572  GRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRV 631

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F+ G D H+ TA  M+                 G D    P L D     RR AK +NF 
Sbjct: 632  FREGKDIHTETAAWMF-----------------GLD----PALVDP--KMRRAAKTVNFG 668

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            + YG +   L+++  +  +EA+  ++ ++    +V  W E   +E R   +V TL GR R
Sbjct: 669  VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDE 1074
              P + S  RS R   ER A N PVQG+AAD+   AM+++    RLK LG  LLLQVHDE
Sbjct: 729  YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLF--PRLKPLGAHLLLQVHDE 786

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            ++LE P + AE AKA+V E M   +     L V L V+    ++W  AK
Sbjct: 787  LVLEVPEDRAEEAKALVKEVMENAY----PLDVPLEVEVGVGRDWLEAK 831


>gi|3913510|sp|O52225.1|DPO1_THEFI RecName: Full=DNA polymerase I, thermostable; AltName: Full=TFI
            polymerase 1
 gi|2739139|gb|AAC46079.1| thermostable DNA polymerase [Thermus filiformis]
          Length = 833

 Score =  190 bits (482), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 128/349 (36%), Positives = 180/349 (51%), Gaps = 35/349 (10%)

Query: 780  ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
            +T Q A EA      + E+      +  L S ++ PL    V  + GR+H   N   T T
Sbjct: 513  STAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLP-RLVHPRTGRLHTRFNQTATAT 571

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+  PNLQN P       +IR+AF+A  G  L+ ADY Q+ELR+LAHL+  +++   
Sbjct: 572  GRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRV 631

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F+ G D H+ TA  M+                 G D    P L D     RR AK +NF 
Sbjct: 632  FREGKDIHTETAAWMF-----------------GLD----PALVDP--KMRRAAKTVNFG 668

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            + YG +   L+++  +  +EA+  ++ ++    +V  W E   +E R   +V TL GR R
Sbjct: 669  VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDE 1074
              P + S  RS R   ER A N PVQG+AAD+   AM+++    RLK LG  LLLQVHDE
Sbjct: 729  YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLF--PRLKPLGAHLLLQVHDE 786

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            ++LE P + AE AKA+V E M   +     L V L V+    ++W  AK
Sbjct: 787  LVLEVPEDRAEEAKALVKEVMENAY----PLDVPLEVEVGVGRDWLEAK 831


>gi|395785269|ref|ZP_10465001.1| DNA polymerase I [Bartonella tamiae Th239]
 gi|423717832|ref|ZP_17692022.1| DNA polymerase I [Bartonella tamiae Th307]
 gi|395424816|gb|EJF90987.1| DNA polymerase I [Bartonella tamiae Th239]
 gi|395427232|gb|EJF93348.1| DNA polymerase I [Bartonella tamiae Th307]
          Length = 978

 Score =  190 bits (482), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 163/304 (53%), Gaps = 26/304 (8%)

Query: 821  NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GRVH + ++  T TGRLS+  PNLQN P   K+  KIR AF+A P  SL+ ADY Q+EL
Sbjct: 698  TGRVHTNYSMAATSTGRLSSSEPNLQNIPIRTKEGRKIRAAFVAAPHYSLLSADYSQIEL 757

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAH+A+ K++  AF  G D H+ TA  M+                       VP+  +
Sbjct: 758  RVLAHIADIKALKKAFDEGLDIHAMTASEMFG----------------------VPI--E 793

Query: 940  AFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               SE RR+AK +NF I YG +  GLA    +S EEA   +  ++     +  + EA K 
Sbjct: 794  GMPSEIRRRAKAINFGIIYGISAFGLANQLGISREEAGSYIRTYFERFPGIKDYMEATKT 853

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R   +V T+ GR   +P I +     R   ERAAIN P+QGSAAD+   AM+ +    
Sbjct: 854  FAREHGYVETIFGRRAHYPEINASNPQIRAFNERAAINAPIQGSAADIIRRAMIHMEDAL 913

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            ++ +L  K+LLQVHDE+I E  ++  +    +V + M        +L V L VDA+ A+N
Sbjct: 914  KIADLSAKMLLQVHDELIFEVANDEIDKTIQLVKDVMENATMPALSLSVPLKVDARAAKN 973

Query: 1119 WYSA 1122
            W  A
Sbjct: 974  WDEA 977



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 130/318 (40%), Gaps = 90/318 (28%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGP------EADFGNGKSCIWVDLLDGGGR-- 422
           A DTE   +D  Q       E++ FS+   P        +   GK+    DLL G GR  
Sbjct: 392 AFDTETTSLDPMQ------AELVGFSLALRPGKAAYIPLNHVKGKN----DLL-GNGRLE 440

Query: 423 ------DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSR 476
                   L    P  E+ +I K+  N  +D  V++ YG+++  F  DTM ++ + D+  
Sbjct: 441 AQITVEKALKFIKPLLENTAILKIAQNMKYDWLVMKQYGIEIRSFD-DTMLLSYVLDAGT 499

Query: 477 RTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAG 536
            T G   ++AL+  ++ +      Y++    G T       IS  ++             
Sbjct: 500 LTHG---MDALS--QRWLGHKPITYKELTGSGKT------AISFAEV------------- 535

Query: 537 KISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFD 596
                         + E    Y+A D+  TL+L++ LK +L+             K +  
Sbjct: 536 --------------DLEKATHYAAEDADVTLRLWQVLKPQLV------------AKGLSR 569

Query: 597 FYQEYWQPFGEILVKMETEGMLVDREYLS----EIEKVARAEQEAAVNRFRKWASKHCPD 652
            Y+   +P  E+L +ME  G+LVDR+ LS    E+ + A AE++            +   
Sbjct: 570 VYERLERPLVEVLARMEQRGILVDRQVLSQLSGELAQSAAAEEDEI----------YTLA 619

Query: 653 AKYMNVGSDTQLRQLLFG 670
            +  N+GS  QL  +LFG
Sbjct: 620 GEKFNIGSPKQLGDILFG 637


>gi|210077507|gb|ACJ07018.1| PolI [Thermus sp. Tok23.A1]
          Length = 833

 Score =  190 bits (482), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 128/349 (36%), Positives = 180/349 (51%), Gaps = 35/349 (10%)

Query: 780  ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
            +T Q A EA      + E+      +  L S ++ PL    V  + GR+H   N   T T
Sbjct: 513  STAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLP-RLVHPRTGRLHTRFNQTATAT 571

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+  PNLQN P       +IR+AF+A  G  L+ ADY Q+ELR+LAHL+  +++   
Sbjct: 572  GRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRV 631

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F+ G D H+ TA  M+                 G D    P L D     RR AK +NF 
Sbjct: 632  FREGKDIHTETAAWMF-----------------GLD----PALVDP--KMRRAAKTVNFG 668

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            + YG +   L+++  +  +EA+  ++ ++    +V  W E   +E R   +V TL GR R
Sbjct: 669  VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDE 1074
              P + S  RS R   ER A N PVQG+AAD+   AM+++    RLK LG  LLLQVHDE
Sbjct: 729  YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLF--PRLKPLGAHLLLQVHDE 786

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            ++LE P + AE AKA+V E M   +     L V L V+    ++W  AK
Sbjct: 787  LVLEVPEDRAEEAKALVKEVMENAY----PLDVPLEVEVGVGRDWLEAK 831


>gi|335032839|ref|ZP_08526211.1| DNA polymerase I [Agrobacterium sp. ATCC 31749]
 gi|333795515|gb|EGL66840.1| DNA polymerase I [Agrobacterium sp. ATCC 31749]
          Length = 1001

 Score =  190 bits (482), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/309 (37%), Positives = 167/309 (54%), Gaps = 30/309 (9%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S +  +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ AD
Sbjct: 715  SYIHPETKRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSAD 774

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+A+   + +AF+ G D H+ TA  M+                       
Sbjct: 775  YSQIELRVLAHVADIPQLRNAFENGIDIHAMTASEMFG---------------------- 812

Query: 934  VPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
            VP+  +   SE RR+AK +NF I YG +  GLA    ++  EA   +  ++     +  +
Sbjct: 813  VPV--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIARSEAGDYIKKYFERFPGIRDY 870

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             EA K  +R + +V T+ GR   +P I+S   S +   ERAAIN P+QGSAAD+   AM+
Sbjct: 871  MEATKAFARENGYVETIFGRRAHYPEIRSSNPSVKAFNERAAINAPIQGSAADIIRRAMI 930

Query: 1053 EISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA--IVVECMSKPFNGKNNLRVDLS 1110
             I      ++L  ++LLQVHDE+I E   E AE+ K   +VV  M        ++RV L 
Sbjct: 931  RIEPALEAEKLSARMLLQVHDELIFE--VEEAEIEKTLPVVVSVMEDAAMPAISMRVPLK 988

Query: 1111 VDAKCAQNW 1119
            VDA+ A NW
Sbjct: 989  VDARAADNW 997



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 164/416 (39%), Gaps = 131/416 (31%)

Query: 358 VWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL 417
           +W+   +   +V A DTE   +D  Q       E++ FS+     A   NGK     D+ 
Sbjct: 391 LWIAAAREAGVV-AFDTETTSLDPMQ------AELVGFSL-----AIADNGKDASGTDIR 438

Query: 418 ---------DGGGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVL 451
                     G G DL ++        APF           ED ++ KV  N  +D  ++
Sbjct: 439 AAYVPLTHKTGSGGDLFSDGIKLAEGQAPFAEALERLKDLHEDEAVLKVAQNLKYDYLLM 498

Query: 452 ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
           + +G+ +  F  DTM ++ + ++ + T G  +L                           
Sbjct: 499 KRHGVVMRSFD-DTMLISYVLEAGKTTHGMDTLS-------------------------- 531

Query: 512 EGFMGK--ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKL 569
           E ++G   I+ KD+ G         +GK S      ++ +       +Y+A D+  TL+L
Sbjct: 532 ERWLGHTPIAYKDVAG---------SGKSSITFDFVDIDKA-----TAYAAEDADVTLRL 577

Query: 570 YKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-- 627
           + +LK +L+             + +   Y+   +P   +L  ME  G+ VDR+ LS +  
Sbjct: 578 WMALKPRLV------------SERLTKVYERLERPLVPVLAHMEERGITVDRQILSRLSG 625

Query: 628 ---EKVARAEQEA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG-----GKPNSK 676
              +K A  E+E    A  RF              N+GS  QL  +LFG     G   +K
Sbjct: 626 ELAQKAASFEEEIYELAGERF--------------NIGSPKQLGDILFGRMGLPGGSKTK 671

Query: 677 DDSESLPIERIFKVPNTEGVIAEGKKTPSK---FRNIT-LRSIGVD-LPTEMYTAT 727
               S   + +      E + AEG + P K   +R +T L+S   D LP+ ++  T
Sbjct: 672 TGQWSTSAQVL------EDLAAEGAELPRKIVDWRQLTKLKSTYTDALPSYIHPET 721


>gi|1097211|prf||2113329A DNA polymerase
          Length = 834

 Score =  190 bits (482), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 120/345 (34%), Positives = 182/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + ++ PL  S V  + GR+H   N   T TGRLS
Sbjct: 519  AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G +L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 578  SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                PL+       RR AK +NF + YG
Sbjct: 638  KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 674

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 675  MSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 734

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            + +  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 735  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLREMGARMLLQVHDELLLE 792

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P   AE   A+  E M K +     L V L V+    ++W SAK
Sbjct: 793  APQARAEEVAALAKEAMEKAY----PLAVPLEVEVGMGEDWLSAK 833


>gi|210077513|gb|ACJ07021.1| PolI [Thermus sp. Wai28.A1]
          Length = 833

 Score =  190 bits (482), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 128/349 (36%), Positives = 180/349 (51%), Gaps = 35/349 (10%)

Query: 780  ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
            +T Q A EA      + E+      +  L S ++ PL    V  + GR+H   N   T T
Sbjct: 513  STAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLP-RLVHPRTGRLHTRFNQTATAT 571

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+  PNLQN P       +IR+AF+A  G  L+ ADY Q+ELR+LAHL+  +++   
Sbjct: 572  GRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRV 631

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F+ G D H+ TA  M+                 G D    P L D     RR AK +NF 
Sbjct: 632  FREGKDIHTETAAWMF-----------------GLD----PALVDP--KMRRAAKTVNFG 668

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            + YG +   L+++  +  +EA+  ++ ++    +V  W E   +E R   +V TL GR R
Sbjct: 669  VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDE 1074
              P + S  RS R   ER A N PVQG+AAD+   AM+++    RLK LG  LLLQVHDE
Sbjct: 729  YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLF--PRLKPLGAHLLLQVHDE 786

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            ++LE P + AE AKA+V E M   +     L V L V+    ++W  AK
Sbjct: 787  LVLEVPEDRAEEAKALVKEVMENAY----PLDVPLEVEVGVGRDWLEAK 831


>gi|38146983|gb|AAR11876.1| DNA polymerase I [Thermus filiformis]
          Length = 833

 Score =  190 bits (482), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 128/349 (36%), Positives = 180/349 (51%), Gaps = 35/349 (10%)

Query: 780  ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
            +T Q A EA      + E+      +  L S ++ PL    V  + GR+H   N   T T
Sbjct: 513  STAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLP-RLVHPRTGRLHTRFNQTATAT 571

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+  PNLQN P       +IR+AF+A  G  L+ ADY Q+ELR+LAHL+  +++   
Sbjct: 572  GRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRV 631

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F+ G D H+ TA  M+                 G D    P L D     RR AK +NF 
Sbjct: 632  FREGKDIHTETAAWMF-----------------GLD----PALVDP--KMRRAAKTVNFG 668

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            + YG +   L+++  +  +EA+  ++ ++    +V  W E   +E R   +V TL GR R
Sbjct: 669  VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDE 1074
              P + S  RS R   ER A N PVQG+AAD+   AM+++    RLK LG  LLLQVHDE
Sbjct: 729  YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLF--PRLKPLGAHLLLQVHDE 786

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            ++LE P + AE AKA+V E M   +     L V L V+    ++W  AK
Sbjct: 787  LVLEVPEDRAEEAKALVKEVMENTY----PLDVPLEVEVGVGRDWLEAK 831


>gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus HB8]
 gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB]
          Length = 834

 Score =  190 bits (482), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 120/345 (34%), Positives = 182/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + ++ PL  S V  + GR+H   N   T TGRLS
Sbjct: 519  AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G +L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 578  SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                PL+       RR AK +NF + YG
Sbjct: 638  KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 674

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 675  MSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 734

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            + +  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 735  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLREMGARMLLQVHDELLLE 792

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P   AE   A+  E M K +     L V L V+    ++W SAK
Sbjct: 793  APQARAEEVAALAKEAMEKAY----PLAVPLEVEVGMGEDWLSAK 833


>gi|424889177|ref|ZP_18312780.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2012]
 gi|393174726|gb|EJC74770.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2012]
          Length = 999

 Score =  190 bits (482), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/308 (38%), Positives = 161/308 (52%), Gaps = 30/308 (9%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  +  RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY 
Sbjct: 713  VHAETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYS 772

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A    +  AF+ G D H+ TA  M+         G  +    GE      
Sbjct: 773  QIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------ 817

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+
Sbjct: 818  --------VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMES 869

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            RK  +R   +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM+++ 
Sbjct: 870  RKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKME 929

Query: 1056 KNARLKELGW----KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSV 1111
                L E+G     ++LLQVHDE+I E   E  E A  ++V  M         +RV L V
Sbjct: 930  PA--LAEVGLGDRVRMLLQVHDELIFEVEDEDVEKAMPVIVSVMENATMPALEMRVPLRV 987

Query: 1112 DAKCAQNW 1119
            DA+ A NW
Sbjct: 988  DARAASNW 995



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 102/256 (39%), Gaps = 71/256 (27%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED ++ KV  N  +D  +++ YG++   F  DTM ++ + D+     G 
Sbjct: 465 RDALPRLKALLEDAAVLKVAQNLKYDYLLMKRYGVETRSFD-DTMLISYVLDAG---TGA 520

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  K++ G         +GK +
Sbjct: 521 HGMDPLS-----------------------EKFLGHTPIPYKEVAG---------SGKAN 548

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L                +   Y+
Sbjct: 549 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 591

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
              +P   +L +ME  G+ VDR+ LS +     +  AR E E  V    ++         
Sbjct: 592 RLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERF--------- 642

Query: 655 YMNVGSDTQLRQLLFG 670
             N+GS  QL  +LFG
Sbjct: 643 --NIGSPKQLGDILFG 656


>gi|342216871|ref|ZP_08709518.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 375 str.
            F0436]
 gi|341587761|gb|EGS31161.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 375 str.
            F0436]
          Length = 437

 Score =  190 bits (482), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 114/325 (35%), Positives = 176/325 (54%), Gaps = 30/325 (9%)

Query: 800  SIDSLISNFILPLQGSNVSGKNGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIR 858
            S+  L S ++  L  +++ G++GR+H +    NT TGR+S+  PNLQN P   K+   IR
Sbjct: 142  SLTKLKSTYLESL--ADLIGEDGRIHSTFKQTNTATGRISSNDPNLQNIPVRTKEGRLIR 199

Query: 859  QAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVE 918
            +AF+A  G+  + ADY Q+ELRILAH++    MLDAF+ G D H RTA  ++        
Sbjct: 200  KAFVAPEGSCFVDADYSQIELRILAHISKDDHMLDAFRQGQDIHRRTAAQVF-------- 251

Query: 919  TGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKT 978
                    H + +    L       ERR+AK +NF I YG +  GL+RD  +  +EAK  
Sbjct: 252  --------HKDQEEITDL-------ERRRAKAVNFGIVYGISDYGLSRDLNIPRKEAKDY 296

Query: 979  VDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTP 1038
            +D + +    V  + +      +   +V T+  R R  P +K+   + R+  ER A+NTP
Sbjct: 297  IDRYLDNFSGVQKFMKDIVALGKKQGYVETIFHRRRYVPELKAKNFNIRSFGERIALNTP 356

Query: 1039 VQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKP 1098
            +QGSAAD+   AM+++ +  +  +   KL+LQ+HDE++LE   E  +  K  +V+ M   
Sbjct: 357  IQGSAADIIKIAMIKVYQALKDSKSQAKLILQIHDELLLEVREEDQDKVKKELVDLM--- 413

Query: 1099 FNGKNNLRVDLSVDAKCAQNWYSAK 1123
              G   L + LSVD    ++WY AK
Sbjct: 414  -EGAAKLDIPLSVDVSSGKSWYEAK 437


>gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
 gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
          Length = 880

 Score =  190 bits (482), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 186/344 (54%), Gaps = 33/344 (9%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
            ++ R+  + I+ + E  S+  L S ++  ++   V+ K+GR+H S N   T TGR+S+  
Sbjct: 567  EKLRDKHEIINMITEYRSVVKLKSTYVDGIEAL-VNAKDGRIHSSFNQTITTTGRISSTD 625

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PN+QN P       +IR+ FIA    SL+ ADY Q+ELR+LAH++    M++AF +G D 
Sbjct: 626  PNMQNIPVRTDMGRQIRKVFIAGDSMSLVDADYSQVELRVLAHMSQDPHMIEAFNSGEDI 685

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H +TA  ++      V+  QV  E                   R  AK +NF I YGK+ 
Sbjct: 686  HRKTASQVFN-----VDFNQVTPEL------------------RSAAKAVNFGIIYGKSD 722

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA+D  +S ++AK+ ++ ++N+ + +  + +    E+    +  T+  R R  P IKS
Sbjct: 723  FGLAQDLNISQKKAKEYIESYFNKYETIKAFMDHIVSEAEEKGYSTTIFNRRRYIPEIKS 782

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEVILEG 1079
                ++N  +RAA+N P+QGSAAD+   AM+ +    RLKE G K  L+LQVHDE+I+E 
Sbjct: 783  SNFVEKNRGKRAAMNAPIQGSAADIIKIAMVNVYN--RLKEKGLKSRLILQVHDELIVEA 840

Query: 1080 PSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             ++     + ++ E M        NL VDL VD    ++WY  K
Sbjct: 841  TADELTQVEVLLREEMENAV----NLGVDLKVDLNIGKSWYETK 880


>gi|399052867|ref|ZP_10742074.1| DNA polymerase I [Brevibacillus sp. CF112]
 gi|433545911|ref|ZP_20502252.1| DNA polymerase I [Brevibacillus agri BAB-2500]
 gi|398049239|gb|EJL41670.1| DNA polymerase I [Brevibacillus sp. CF112]
 gi|432182800|gb|ELK40360.1| DNA polymerase I [Brevibacillus agri BAB-2500]
          Length = 883

 Score =  190 bits (482), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/334 (35%), Positives = 182/334 (54%), Gaps = 30/334 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            I A+     +  L S +I  L    +  K  +VH   N   T TGRLS+  PNLQN P  
Sbjct: 578  IDAILNFRQLGKLRSTYIEGLT-KEIHTKTSKVHTLYNQATTATGRLSSTEPNLQNIPIR 636

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  KIR+AFI +  G  ++ ADY Q+ELRILAH++  ++++DAF+ G D H+RTAM++
Sbjct: 637  MEEGRKIREAFIPSEDGWYMLAADYSQIELRILAHISGDENLIDAFRKGMDIHTRTAMDV 696

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +      V  G+V                   +  RR+AK +NF I YG +  GL+++  
Sbjct: 697  F-----GVSEGEVT------------------SLMRRQAKAVNFGIVYGISDYGLSQNLN 733

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            ++ +EA + ++ ++     V  W +   ++++ D +V TLL R R  P I+S   + R+ 
Sbjct: 734  ITRKEAAEFIERYFAVFSGVKRWMDEIVQQAKQDGYVTTLLHRRRYLPDIRSSNFNLRSF 793

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER A+NTP+QG+AADV   AM+ + ++   K L  ++LLQVHDE++ E P     + + 
Sbjct: 794  AERTAMNTPIQGTAADVIKLAMIRMQESLEQKGLSSRMLLQVHDELVFEVPENELAIMRK 853

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +V E M     G   L V L VD    ++WY AK
Sbjct: 854  LVPEVM----EGALALDVPLKVDVSDGRSWYDAK 883


>gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1016

 Score =  189 bits (481), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 159/302 (52%), Gaps = 30/302 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 736  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 795

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 796  LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 834

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK  +R
Sbjct: 835  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 892

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM++I     L 
Sbjct: 893  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPA--LV 950

Query: 1062 ELGW----KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQ 1117
            E+G     ++LLQVHDE+I E   E  E A  ++V  M         +RV L VDA+ A 
Sbjct: 951  EVGLADRVRMLLQVHDELIFEVEDEDVEKAMPVIVSVMENATMPALEMRVPLRVDARAAT 1010

Query: 1118 NW 1119
            NW
Sbjct: 1011 NW 1012



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 101/255 (39%), Gaps = 71/255 (27%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           D L       ED SI KV  N  +D  +++ YG++   F  DTM ++ + D+     G +
Sbjct: 483 DALARLKALLEDESILKVAQNLKYDYLLMKRYGIETRSFD-DTMLISYVLDAG---TGAH 538

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIST 540
            ++ L+                       E F+G   I  KD+ G         +GK + 
Sbjct: 539 GMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKANV 566

Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
              + ++ R        Y+A D+  TL+L+  LK +L                +   Y+ 
Sbjct: 567 TFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYER 609

Query: 601 YWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAKY 655
             +P   +L +ME  G+ VDR+ LS +     +  AR E E  V    ++          
Sbjct: 610 LERPLLPVLARMEARGITVDRQILSRLSGELAQSAARLEDEIYVLAGERF---------- 659

Query: 656 MNVGSDTQLRQLLFG 670
            N+GS  QL  +LFG
Sbjct: 660 -NIGSPKQLGDILFG 673


>gi|195977329|ref|YP_002122573.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195974034|gb|ACG61560.1| DNA polymerase I PolA [Streptococcus equi subsp. zooepidemicus
            MGCS10565]
          Length = 899

 Score =  189 bits (481), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 184/347 (53%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +GR+H   L   T+TGRLS
Sbjct: 580  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADGRIHTRYLQDLTQTGRLS 639

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AFK
Sbjct: 640  SVDPNLQNIPIRLEQGRL-IRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFK 698

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D  A++RR AK +NF I 
Sbjct: 699  EGADIHTSTAMRVF-----------------GIEKP-----EDVTANDRRNAKAVNFGIV 736

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +  ++AK  +D ++     +  + E   +E++   +V TL  R R+ 
Sbjct: 737  YGISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDKGYVETLFKRRRQL 796

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + +         K+LLQVHDE++
Sbjct: 797  PDINSRQFNLRSFAERTAINSPIQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIV 856

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE PS      K +V E M        NL V L VD    ++WY AK
Sbjct: 857  LEVPSHELAAVKELVKETMESAV----NLAVPLRVDESAGKSWYEAK 899


>gi|210077505|gb|ACJ07017.1| PolI [Thermus sp. OH.A2]
          Length = 833

 Score =  189 bits (481), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 128/349 (36%), Positives = 180/349 (51%), Gaps = 35/349 (10%)

Query: 780  ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
            +T Q A EA      + E+      +  L S ++ PL    V  + GR+H   N   T T
Sbjct: 513  STAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLP-RLVHPRTGRLHTRFNQTATAT 571

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+  PNLQN P       +IR+AF+A  G  L+ ADY Q+ELR+LAHL+  +++   
Sbjct: 572  GRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRV 631

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F+ G D H+ TA  M+                 G D    P L D     RR AK +NF 
Sbjct: 632  FREGKDIHTETAAWMF-----------------GLD----PALVDQ--KMRRAAKTVNFG 668

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            + YG +   L+++  +  +EA+  ++ ++    +V  W E   +E R   +V TL GR R
Sbjct: 669  VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDE 1074
              P + S  RS R   ER A N PVQG+AAD+   AM+++    RLK LG  LLLQVHDE
Sbjct: 729  YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLF--PRLKPLGAHLLLQVHDE 786

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            ++LE P + AE AKA+V E M   +     L V L V+    ++W  AK
Sbjct: 787  LVLEVPEDRAEEAKALVKEVMENAY----PLDVPLEVEVGVGRDWLEAK 831


>gi|395788138|ref|ZP_10467714.1| DNA polymerase I [Bartonella birtlesii LL-WM9]
 gi|395409920|gb|EJF76505.1| DNA polymerase I [Bartonella birtlesii LL-WM9]
          Length = 968

 Score =  189 bits (481), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 117/319 (36%), Positives = 168/319 (52%), Gaps = 32/319 (10%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 680  LPSYILP--------KTGRVHTNYSLATTSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+A+  ++ +AF  G D H+ TA  M+           V 
Sbjct: 732  PKGHVLLSADYSQIELRILAHIADITALKEAFAKGQDIHAMTASQMF----------GVA 781

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
            +E    D              RR+AK +NF I YG +  GLA     S +EA + + L++
Sbjct: 782  IEGMDSDI-------------RRRAKAINFGIIYGISAFGLANQLGFSRQEAGRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R + +V T+ GR   +P IK+     R+  ERAAIN P+QGSA
Sbjct: 829  ERFPGIKDYMEKTKIFARQNGYVETIFGRRIHYPEIKATNLQVRSFNERAAINAPIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN 1103
            AD+   AM+ +    + ++L  K+LLQVHDE+I E P + +E    +V + M        
Sbjct: 889  ADIIRRAMIHMEDALQKEKLSAKMLLQVHDELIFEVPEDESEKTMVVVKKVMENAAMPVL 948

Query: 1104 NLRVDLSVDAKCAQNWYSA 1122
            +L V L V    A+NW  A
Sbjct: 949  SLSVPLEVKVMIAKNWDEA 967



 Score = 49.3 bits (116), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 127/313 (40%), Gaps = 80/313 (25%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGP-EADFGNGKSCIWVDLLDGGGRDL----- 424
           A DTE   +D  Q       +++ FS+   P +A +   +     D L GG R +     
Sbjct: 382 AFDTETTSLDPLQ------AKLVGFSLALKPGKAAYVPLEHVEGEDDLLGGARIVGQIEP 435

Query: 425 ---LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
              L    P  E+ ++ K+  N  +D  V++  G+ +  F  DTM ++ + D+   T   
Sbjct: 436 QKALALLKPILENQAVLKIGQNIKYDWLVMKQKGIVIRSFD-DTMLLSYVLDAGSLTHN- 493

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSK---GNTDEGFMGKISMKDIFGRRKLKKDGSAGKI 538
                                 D+SK   G+T       I+ KD+    K        KI
Sbjct: 494 --------------------MDDLSKRWLGHT------PIAYKDLTHNGK--------KI 519

Query: 539 STIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFY 598
           ++ A V+  Q         Y+A D+  TL+L++ LK +L+             + M   Y
Sbjct: 520 TSFAKVDLKQAT------LYAAEDADVTLRLWQVLKPQLV------------SQRMTKIY 561

Query: 599 QEYWQPFGEILVKMETEGMLVDREYLSEIE-KVARAEQEAAVNRFRKWASKHCPDAKYMN 657
           + + +P  E+L +ME  G+LVDR+ L  +  ++A+A        ++    K        N
Sbjct: 562 ERFDRPLIEVLARMEERGILVDRQILLRLSGELAQAALILEEEIYQLAGEK-------FN 614

Query: 658 VGSDTQLRQLLFG 670
           + S  QL  +LFG
Sbjct: 615 IASPKQLGDILFG 627


>gi|406670271|ref|ZP_11077523.1| DNA polymerase I [Facklamia ignava CCUG 37419]
 gi|405579578|gb|EKB53673.1| DNA polymerase I [Facklamia ignava CCUG 37419]
          Length = 887

 Score =  189 bits (481), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 120/343 (34%), Positives = 181/343 (52%), Gaps = 36/343 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            + D +  L     I  LI ++  +  LQG+ + G       +G++H   +   T+TGRLS
Sbjct: 569  SADVLEKLQHQHPIIELILDYRQLNKLQGTYLIGLQDYIQADGKIHTHFVQTLTQTGRLS 628

Query: 839  ARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P   ++  KIRQAF+ + PG  L  ADY Q+ELR+LAH++  K+M  AF  
Sbjct: 629  STDPNLQNIPIRIEEGRKIRQAFVPSEPGWQLFSADYSQIELRVLAHISGDKAMQQAFID 688

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TA  ++                H +D   V        ++RR+AK +NF I Y
Sbjct: 689  GEDIHSATARAIF----------------HLDDDQKVT------PNDRRQAKAVNFGIVY 726

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S  EAK+ +D +      +  + E   ++++ D +V TL  R R  P
Sbjct: 727  GISDYGLSQNLNISRAEAKRFIDRYLETYSGIHQFMEKIVEQAKKDGYVSTLFHRRRYLP 786

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVIL 1077
             I S   + R+  ER A+N+P+QG+AAD+   AM+ +++      L  ++LLQVHDE+IL
Sbjct: 787  DIHSSNFNVRSFAERTALNSPIQGTAADIIKIAMIRLAEKLEAMNLSSRILLQVHDELIL 846

Query: 1078 EGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
            EGPSE  E+   IV   M +       L + L VD     NWY
Sbjct: 847  EGPSEEMEILSEIVPAMMEQAV----ELSIPLIVDYNQGNNWY 885


>gi|339007842|ref|ZP_08640416.1| DNA polymerase I [Brevibacillus laterosporus LMG 15441]
 gi|338775045|gb|EGP34574.1| DNA polymerase I [Brevibacillus laterosporus LMG 15441]
          Length = 897

 Score =  189 bits (481), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 110/311 (35%), Positives = 169/311 (54%), Gaps = 33/311 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DY 874
            + GK GRVH   N   T TGRLS+  PNLQN P   ++  KIR+AF+    N  I+A DY
Sbjct: 616  IHGKTGRVHTRFNQATTATGRLSSTEPNLQNIPIRLEEGRKIRKAFVPTNDNCYILAADY 675

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELRILAH++   +++DAF    D H+RTAM+++    + V +               
Sbjct: 676  SQIELRILAHISKDPNLIDAFVNNMDIHTRTAMDVFGVSEDEVTSNM------------- 722

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                      RR+AK +NF I YG +  GL+++  +  +EA + +  +++    V  + E
Sbjct: 723  ----------RRQAKAVNFGIVYGISDFGLSQNLNIPRKEAAEFIARYFDVFSGVQNYME 772

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              K +++ D +V TLL R R  P I S   + R+  ER A+NTP+QG+AAD+   AM+++
Sbjct: 773  EIKHQAKKDGYVTTLLHRRRYLPDIASRNFNLRSFAERTAMNTPIQGTAADIIKLAMIQM 832

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVD--LSVD 1112
             +     +L  ++LLQVHDE++ E P +  E  + +V   M      +N L++D  L VD
Sbjct: 833  QEALVRNQLKSRMLLQVHDELVFEVPEDELETMQKLVANVM------ENALKLDVPLKVD 886

Query: 1113 AKCAQNWYSAK 1123
                + WY AK
Sbjct: 887  VNYGETWYDAK 897


>gi|418407646|ref|ZP_12980963.1| DNA polymerase I [Agrobacterium tumefaciens 5A]
 gi|358005632|gb|EHJ97957.1| DNA polymerase I [Agrobacterium tumefaciens 5A]
          Length = 995

 Score =  189 bits (481), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 115/305 (37%), Positives = 162/305 (53%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ ADY 
Sbjct: 711  VHPQTKRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYS 770

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF+ G D H+ TA  M+                       VP
Sbjct: 771  QIELRVLAHVADIPQLRSAFENGIDIHAMTASEMFG----------------------VP 808

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    ++  EA + +  ++     +  + E
Sbjct: 809  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIARSEAGEYIKKYFERFPGIRDYME 866

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R + +V T+ GR   +P I+S   S +   ERAAIN P+QGSAAD+   AM+ I
Sbjct: 867  ATKAFARENGYVETIFGRRAHYPEIRSSNPSMKAFNERAAINAPIQGSAADIIRRAMVRI 926

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  ++L  ++LLQVHDE+I E      E    IVV  M        ++RV L VDA+
Sbjct: 927  EPVLEAEKLSARMLLQVHDELIFEVEEGEIEKTLPIVVSVMENAAMPAISMRVPLKVDAR 986

Query: 1115 CAQNW 1119
             A NW
Sbjct: 987  AADNW 991



 Score = 48.9 bits (115), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 128/338 (37%), Gaps = 114/338 (33%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL---------DG 419
           V A DTE   +D  Q       E++ FS+     A   NGK     D+           G
Sbjct: 395 VVAFDTETTSLDPMQ------AELVGFSL-----AIADNGKDASGTDIRAAYVPLTHKTG 443

Query: 420 GGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
            G DL ++         PF           ED ++ K+  N  +D  +++ +G+ +  F 
Sbjct: 444 SGGDLFSDGIRLAEGQVPFAEALARLKDLLEDEAVLKIAQNLKYDYLLMKRHGVVMQSFD 503

Query: 463 ADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISM 520
            DTM ++ + ++ + T G  +L                           E ++G   I+ 
Sbjct: 504 -DTMLISYVLEAGKTTHGMDTLS--------------------------ERWLGHTPIAY 536

Query: 521 KDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEM 580
           KD+ G         +GK S      ++ +       +Y+A D+  TL+L+  LK +L   
Sbjct: 537 KDVAG---------SGKSSITFDFVDIDKA-----TAYAAEDADVTLRLWMVLKPRL--- 579

Query: 581 SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQ 635
                      + +   Y+   +P   +L  ME  G+ VDR+ LS +     +K A  E+
Sbjct: 580 ---------AAERLTSVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAAAFEE 630

Query: 636 EA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
           E    A  RF              N+GS  QL  +LFG
Sbjct: 631 EVYQLAGERF--------------NIGSPKQLGDILFG 654


>gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4]
 gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4]
          Length = 992

 Score =  189 bits (481), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 119/307 (38%), Positives = 160/307 (52%), Gaps = 28/307 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  +  RVH S ++  T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ ADY 
Sbjct: 706  VHPQTKRVHTSYSMAATTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYS 765

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 766  QIELRVLAHVADIPQLRQAFADGVDIHAMTASEMF----------------------GVP 803

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  D   SE RR+AK +NF I YG +  GLA    +   EA + +  ++     +  + E
Sbjct: 804  V--DGMPSEVRRRAKAINFGIIYGISAFGLANQLSIERAEAGEYIKKYFERFPGIKDYME 861

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            + K   R   +V T+ GR   +P IKS   S R   ERAAIN P+QGSAADV   AM+++
Sbjct: 862  STKAFVREHGYVETIFGRRAHYPEIKSSNPSMRAFNERAAINAPIQGSAADVIRRAMVQV 921

Query: 1055 SKNARLKELGWK--LLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
                    LG K  +LLQVHDE+I E   E+ E A  ++V  M         +RV L VD
Sbjct: 922  EPALAKAGLGEKTRMLLQVHDELIFEVEDEAIEAALPVIVSTMENAAMPAIAMRVPLKVD 981

Query: 1113 AKCAQNW 1119
            A+ A NW
Sbjct: 982  ARAADNW 988



 Score = 47.8 bits (112), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 99/248 (39%), Gaps = 61/248 (24%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
           L       ED S+ KV  N  +D  V++ +G+ + GF  DTM ++            Y L
Sbjct: 461 LTALKGLLEDASVLKVAQNLKYDYLVMKRHGIVIRGFD-DTMLLS------------YVL 507

Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKISTIA 542
           EA  G          A+  D    +  E ++G   I  K++ G         +GK     
Sbjct: 508 EAGVG----------AHGMD----SLSERWLGHTPIPYKEVAG---------SGKSLVTF 544

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
            + ++ +       +Y+A D+  TL+L+  LK +L  +             +   Y+   
Sbjct: 545 DLVDIDKA-----TAYAAEDADVTLRLWLVLKPRLAAVG------------LARVYERLE 587

Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
           +P   +L  ME  G+ +DR+ LS +      +  A  +   + A +        NVGS  
Sbjct: 588 RPLVPVLADMEERGITIDRQILSRLSGELAQKAAAFEDEIYELAGER------FNVGSPK 641

Query: 663 QLRQLLFG 670
           QL  +LFG
Sbjct: 642 QLGDILFG 649


>gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3]
 gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3]
          Length = 995

 Score =  189 bits (481), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 115/305 (37%), Positives = 162/305 (53%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ ADY 
Sbjct: 711  VHPQTKRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYS 770

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF+ G D H+ TA  M+                       VP
Sbjct: 771  QIELRVLAHVADIPQLRSAFENGIDIHAMTASEMFG----------------------VP 808

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    ++  EA + +  ++     +  + E
Sbjct: 809  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIARSEAGEYIKKYFERFPGIRDYME 866

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R + +V T+ GR   +P I+S   S +   ERAAIN P+QGSAAD+   AM+ I
Sbjct: 867  ATKAFARENGYVETIFGRRAHYPEIRSSNPSMKAFNERAAINAPIQGSAADIIRRAMVRI 926

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  ++L  ++LLQVHDE+I E      E    IVV  M        ++RV L VDA+
Sbjct: 927  EPVLEAEKLSARMLLQVHDELIFEVEEGEIEKTLPIVVSVMENAAMPAISMRVPLKVDAR 986

Query: 1115 CAQNW 1119
             A NW
Sbjct: 987  AADNW 991



 Score = 48.9 bits (115), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 128/338 (37%), Gaps = 114/338 (33%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL---------DG 419
           V A DTE   +D  Q       E++ FS+     A   NGK     D+           G
Sbjct: 395 VVAFDTETTSLDPMQ------AELVGFSL-----AIADNGKDASGTDIRAAYVPLTHKTG 443

Query: 420 GGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
            G DL ++         PF           ED ++ K+  N  +D  +++ +G+ +  F 
Sbjct: 444 SGGDLFSDGIRLAEGQVPFAEALARLKDLLEDEAVLKIAQNLKYDYLLMKRHGVVMQSFD 503

Query: 463 ADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISM 520
            DTM ++ + ++ + T G  +L                           E ++G   I+ 
Sbjct: 504 -DTMLISYVLEAGKTTHGMDTLS--------------------------ERWLGHTPIAY 536

Query: 521 KDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEM 580
           KD+ G         +GK S      ++ +       +Y+A D+  TL+L+  LK +L   
Sbjct: 537 KDVAG---------SGKSSITFDFVDIDKA-----TAYAAEDADVTLRLWMVLKPRL--- 579

Query: 581 SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQ 635
                      + +   Y+   +P   +L  ME  G+ VDR+ LS +     +K A  E+
Sbjct: 580 ---------AAERLTSVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAAAFEE 630

Query: 636 EA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
           E    A  RF              N+GS  QL  +LFG
Sbjct: 631 EVYQLAGERF--------------NIGSPKQLGDILFG 654


>gi|392429448|ref|YP_006470462.1| DNA polymerase I [Streptococcus intermedius JTH08]
 gi|419776905|ref|ZP_14302824.1| DNA-directed DNA polymerase [Streptococcus intermedius SK54]
 gi|383845590|gb|EID82993.1| DNA-directed DNA polymerase [Streptococcus intermedius SK54]
 gi|391758597|dbj|BAM24214.1| DNA polymerase I [Streptococcus intermedius JTH08]
          Length = 881

 Score =  189 bits (481), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 180/347 (51%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I  +  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVEKILEYRQIAKIQSTYVMGLQDWILADGKIHTRYLQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  K +++AF+
Sbjct: 622  SVYPNLQNIPIRLEQGRL-IRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDKHLIEAFR 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------GIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDQGYVETLFHRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +  R      ++LLQVHDE++
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALRAGRFKSRMLLQVHDEIV 838

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P+      K +V E M         L V L  D    + WY AK
Sbjct: 839  LEVPANELTAIKTLVKEIMESAI----ELSVPLKADESAGETWYEAK 881


>gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
 gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
          Length = 953

 Score =  189 bits (481), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 177/351 (50%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREACDA----ISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-IN 831
            + T +E  E+       I  + E   +  L+S +I  LP     ++ + GR+H S N   
Sbjct: 632  YVTSEEVLESLRGKHAVIGKILEYRGLKKLLSTYIDALP---QLINSRTGRIHTSFNQAV 688

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M
Sbjct: 689  TSTGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNM 748

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y          ++ +E    D              RRKAK  
Sbjct: 749  IDAFLSGHDIHAATAAKIY----------KIDIEEVTSDM-------------RRKAKTA 785

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    VS +EAK+ +D ++    +V  + +   + +R + +V T+  
Sbjct: 786  NFGIIYGISVFGLAERLNVSRQEAKELIDGYFETYPQVKEYMDKSIQVARENGYVETIFH 845

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM  I +     +L  K++LQV
Sbjct: 846  RKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMAHIYQRITSNKLKAKMILQV 905

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+    P+   E+ + IV+E M   +     + V L  D     NW  A
Sbjct: 906  HDELNFSVPASEKELVQQIVIEEMEHAY----RMHVPLKADCGWGNNWLEA 952


>gi|395782170|ref|ZP_10462574.1| DNA polymerase I [Bartonella rattimassiliensis 15908]
 gi|395419109|gb|EJF85410.1| DNA polymerase I [Bartonella rattimassiliensis 15908]
          Length = 967

 Score =  189 bits (481), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 118/319 (36%), Positives = 168/319 (52%), Gaps = 32/319 (10%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 679  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIA 730

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+A+ K++ +AF  G D H+ TA  M+         G  +
Sbjct: 731  PKGHVLLSADYSQIELRILAHIADIKALKEAFAKGHDIHAITASQMF---------GIAI 781

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
               H +               RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 782  EGMHSDI--------------RRRAKAINFGIIYGISAFGLANQLGISRQEAGRYIQLYF 827

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K   R + +V T+ GR   +P IK+     R+  ERAAIN P+QGSA
Sbjct: 828  ERFPGIKDYMEKTKNFVRENGYVETIFGRRIHYPEIKTKNVKIRSLNERAAINAPIQGSA 887

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN 1103
            AD+   AM+++    + + L  K+LLQVHDE+I E P E ++    +V   M        
Sbjct: 888  ADIIRRAMIKMEDALKGESLSAKMLLQVHDELIFEVPKEESKKTMDVVKNVMENATMPVL 947

Query: 1104 NLRVDLSVDAKCAQNWYSA 1122
            +L V L V    AQNW  A
Sbjct: 948  SLSVPLEVKVMTAQNWDEA 966



 Score = 48.9 bits (115), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 151/390 (38%), Gaps = 113/390 (28%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNE--- 427
           A DTE   +D  Q       +++ FS+   PE       + I ++  D G  DLL +   
Sbjct: 380 AFDTETTSLDPMQ------AKLVGFSLALQPEK-----AAYIPLEHFDEGEGDLLRDGRI 428

Query: 428 ------------FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSS 475
                         P  ED ++ K+  N  +D  V++ Y +++  F  DTM ++ + D+ 
Sbjct: 429 ASQIEIQKALALLKPLLEDSAVLKIGQNIKYDWLVMKQYDIEIRSFD-DTMLLSYVLDAG 487

Query: 476 RRTEGGYSL-EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGS 534
             T     L E   G + +      AY+  M KG                          
Sbjct: 488 TLTHNMDDLSERWLGHKPI------AYKDLMHKGK------------------------- 516

Query: 535 AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSM 594
             KI++ A V+  Q         Y+A D+  TL+L++ LK +L+             + M
Sbjct: 517 --KITSFAQVDLKQAT------LYAAEDADITLRLWQVLKPQLV------------AQGM 556

Query: 595 FDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHC 650
              Y+   +P  E+L +ME  G+L+DR+ L     E+ + A   +E    +         
Sbjct: 557 VKIYERLDRPLVEVLARMEERGILIDRQILLRLSGELAQAALILEEEIYKQ--------- 607

Query: 651 PDAKYMNVGSDTQLRQLLF-------GGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKT 703
            D K+ N+ S  QL  +LF       G K      S S  +         E + AEG   
Sbjct: 608 ADEKF-NLASPKQLGDILFDKMGLPGGTKTKGGQWSTSAQV--------LEELAAEGHIL 658

Query: 704 PSK---FRNIT-LRSIGVD-LPTEMYTATG 728
           P K   +R +T L+S   D LP+ +   TG
Sbjct: 659 PRKIIEWRQLTKLKSTYADALPSYILPKTG 688


>gi|217967271|ref|YP_002352777.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
 gi|217336370|gb|ACK42163.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
          Length = 855

 Score =  189 bits (481), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 160/302 (52%), Gaps = 24/302 (7%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH   N   T TGR+S+  PNLQN P   ++  KIR+AFIA  G   +  DY 
Sbjct: 575  INSQTGRVHTKFNPTGTATGRISSSEPNLQNIPIKSEEGRKIRRAFIADDGYYFVSLDYS 634

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+    ++ AF+ G D H RTA  ++    + V+                 
Sbjct: 635  QIELRIMAHLSQEPKLISAFQKGEDIHRRTAAEIFGVPEDEVDD---------------- 678

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            LL       R +AK +NF I YG +  GL+    ++ EEA+K +D ++     V  + + 
Sbjct: 679  LL-------RSRAKAVNFGIIYGISSFGLSETASITPEEAEKFIDSYFKHYPRVKLFIDK 731

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
               E+R   +V TL GR R  P I+S+ +  RN  ER AIN P+QG+AAD+   AM+EI 
Sbjct: 732  TIYEAREKLYVKTLFGRKRYIPEIRSINKQVRNAYERIAINAPIQGTAADIIKLAMIEIY 791

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
            K    K L  ++LLQ+HDE+ILE P E  E    +  E M K       L V++SV    
Sbjct: 792  KEIEEKNLKSRILLQIHDELILEVPEEEMEFTPLMAKEKMEKVVELSVPLVVEISVGKNL 851

Query: 1116 AQ 1117
            A+
Sbjct: 852  AE 853


>gi|302871762|ref|YP_003840398.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
 gi|302574621|gb|ADL42412.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
          Length = 850

 Score =  189 bits (481), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 116/313 (37%), Positives = 170/313 (54%), Gaps = 30/313 (9%)

Query: 812  LQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
            LQ  N S   GRVH + +   T TGRL++  PNLQN P    +   IR+ FI   G+ LI
Sbjct: 567  LQAINPSS--GRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGRLIRKVFIPEEGHVLI 624

Query: 871  VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
             ADY Q+ELRILAH++  + +++AFK   D HS+TA  ++                 G D
Sbjct: 625  DADYSQIELRILAHISEDERLINAFKNNVDIHSQTAAEVF-----------------GVD 667

Query: 931  KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVL 990
                  + D     R +AK +NF I YG +  GLARD K+S +EA + ++ ++    +V 
Sbjct: 668  ------IDDVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPKVK 721

Query: 991  TWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCA 1050
             + +   K +R + +V TL  R R    IKS  R+ RN+ ER A+N+P+QGSAAD+   A
Sbjct: 722  EYLDNIVKFARDNGYVLTLFNRRRYVKDIKSANRNARNYAERIAMNSPIQGSAADIMKLA 781

Query: 1051 MLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLS 1110
            M+++ +  +   L  K++LQVHDE+++E P E  ++ K IV   M         L+V L 
Sbjct: 782  MIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKEIVKREMENAV----ALKVPLV 837

Query: 1111 VDAKCAQNWYSAK 1123
            V+ K   NWY  K
Sbjct: 838  VEVKEGLNWYETK 850


>gi|2506365|sp|P80194.2|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC
            polymerase 1
 gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus]
          Length = 834

 Score =  189 bits (480), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 120/345 (34%), Positives = 181/345 (52%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + ++ PL  S V    GR+H   N   T TGRLS
Sbjct: 519  AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPNTGRLHTRFNQTATATGRLS 577

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G +L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 578  SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                PL+       RR AK +NF + YG
Sbjct: 638  KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 674

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 675  MSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 734

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            + +  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 735  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLREMGARMLLQVHDELLLE 792

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P   AE   A+  E M K +     L V L V+    ++W SAK
Sbjct: 793  APQAGAEEVAALAKEAMEKAY----PLAVPLEVEVGMGEDWLSAK 833


>gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
 gi|444309209|ref|ZP_21144849.1| DNA polymerase I [Ochrobactrum intermedium M86]
 gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
 gi|443487600|gb|ELT50362.1| DNA polymerase I [Ochrobactrum intermedium M86]
          Length = 985

 Score =  189 bits (480), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 115/299 (38%), Positives = 156/299 (52%), Gaps = 26/299 (8%)

Query: 823  RVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH C    +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY Q+ELR+
Sbjct: 707  RVHTCYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 766

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+                       VP+  +  
Sbjct: 767  LAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VPV--EGM 802

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + EA K  +
Sbjct: 803  PSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFA 862

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R   +V T+ GR   +P I++     R   ERAAIN P+QGSAAD+   AM+ +      
Sbjct: 863  REHGYVETIFGRRAHYPDIRASNPQIRAFNERAAINAPIQGSAADIIRRAMIRMEDALAK 922

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            ++L  ++LLQVHDE+I E P    E   ++V   M        +L V L VDA+ A NW
Sbjct: 923  EKLAARMLLQVHDELIFEVPENEVEKTVSVVRHVMENAAMPAVSLAVPLHVDARAAHNW 981



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 127/324 (39%), Gaps = 90/324 (27%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGP--------EADFGNGKSCIWVDLLDGG-- 420
           A DTE   +D  Q       E++ FS+   P        +   G G      DLL GG  
Sbjct: 399 AFDTETTSVDPMQ------AELVGFSLALAPGRAAYIPLQHKSGAG------DLLGGGTV 446

Query: 421 -GRDLLNE----FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSS 475
            G+  L E         ED S+ K+  N  +D  ++  YG+    F  DTM ++ + D+ 
Sbjct: 447 EGQIPLGEALAALKTVLEDASVLKIAQNMKYDWLIMRRYGINTVSFD-DTMLISYVLDAG 505

Query: 476 RRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDG 533
               G + ++ L+                       E ++G   I+ KD+ G        
Sbjct: 506 ---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG-------- 531

Query: 534 SAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKS 593
            +GK S    + ++ R       +Y+A D+  TL+L++ LK +L              + 
Sbjct: 532 -SGKSSVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------AAEG 573

Query: 594 MFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDA 653
           +   Y+   +P  ++L +ME  G+ VDR+ LS +         A  +   + A +     
Sbjct: 574 LMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAYEDEIYELAGER---- 629

Query: 654 KYMNVGSDTQLRQLLFG--GKPNS 675
               +GS  QL  +LFG  G P +
Sbjct: 630 --FTIGSPKQLGDILFGKMGLPGA 651


>gi|169824040|ref|YP_001691651.1| DNA polymerase I [Finegoldia magna ATCC 29328]
 gi|167830845|dbj|BAG07761.1| DNA polymerase I [Finegoldia magna ATCC 29328]
          Length = 875

 Score =  189 bits (480), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 183/349 (52%), Gaps = 34/349 (9%)

Query: 780  ATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINT-ET 834
            +T+QE  EA     + I  +    +I  L + +I  +   ++  K+G++H +      +T
Sbjct: 556  STDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGM--VDLIKKDGKIHTTFQQTIAQT 613

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GR+S+  PNLQN P   ++   IR+AF+   GN L+ ADY Q+ELR+LA LAN + MLDA
Sbjct: 614  GRISSTNPNLQNIPIRTEEGRLIRKAFVPSEGNMLLDADYSQIELRVLADLANDEVMLDA 673

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            FK G D H +TA  ++    + V + Q                       R  AK +NF 
Sbjct: 674  FKHGADIHRKTASEVFKVDFDKVTSLQ-----------------------RSNAKAVNFG 710

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            I YG     L++D  ++ +EAK+ ++ + +  + +  + E      +   +V T++ R R
Sbjct: 711  IVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMNRRR 770

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDE 1074
              P +KS   + R+  ER A+NTP+QGSAAD+   AM++       ++L  KL+LQVHDE
Sbjct: 771  YIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLILQVHDE 830

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +I++ P +  E     V+E M        +L+VD+ +D   A NWY AK
Sbjct: 831  LIVDCPKDEREK----VLEIMKDVMTHAVDLKVDMKIDVNSADNWYDAK 875


>gi|300087225|ref|YP_003757747.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526958|gb|ADJ25426.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 915

 Score =  189 bits (480), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 118/312 (37%), Positives = 170/312 (54%), Gaps = 31/312 (9%)

Query: 809  ILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN 867
            ILP   + VS ++GR+H S N   T TGRLS+  PNLQN P   +   +IRQAF+A PG+
Sbjct: 630  ILP---AMVSARDGRLHTSFNQARTATGRLSSSDPNLQNIPVRGQYGREIRQAFVAPPGH 686

Query: 868  SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH 927
             L+ ADY Q++LR LAHL+   +++ AF A  D H+ TAM++Y   R+            
Sbjct: 687  FLLAADYSQIDLRALAHLSGDSALIAAFNAEEDIHTATAMSLYGLPRD------------ 734

Query: 928  GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
             E  P +          RR AK +NF + YG +  GL +  ++S EE+ + +  ++    
Sbjct: 735  -EITPEM----------RRFAKTVNFGVIYGMSGYGLEQATEMSREESTRFIQTYFERYP 783

Query: 988  EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
             V  +    K+++R   +V T+LGR R  P I +  R  R   ER AIN PVQG++AD+ 
Sbjct: 784  GVRAYLNLTKEQARSRGYVETILGRRRYIPDINAANRQVREAAERMAINMPVQGTSADII 843

Query: 1048 MCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRV 1107
              AMLE+ +    + L  +LLLQVHDE+I E P   AE+    + E  S+  +    L+V
Sbjct: 844  KVAMLEVRREMDSQGLESRLLLQVHDELIFEVP--QAEL--MFMSELASRRMSAAVELKV 899

Query: 1108 DLSVDAKCAQNW 1119
             L VD K   NW
Sbjct: 900  PLRVDIKYGANW 911


>gi|365859597|ref|ZP_09399453.1| DNA-directed DNA polymerase [Acetobacteraceae bacterium AT-5844]
 gi|363712070|gb|EHL95774.1| DNA-directed DNA polymerase [Acetobacteraceae bacterium AT-5844]
          Length = 963

 Score =  189 bits (480), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 116/309 (37%), Positives = 165/309 (53%), Gaps = 28/309 (9%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + +  ++GRVH   ++  T TGRLS+  PNLQN P   ++  +IR+AF+A PG+ L+ AD
Sbjct: 681  AQIDARDGRVHTDFSMAITSTGRLSSTEPNLQNIPIRTEEGVRIRRAFVARPGHVLLAAD 740

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAHLA+  S+  AF    D HSRTA +++ H+    E G+V       DK  
Sbjct: 741  YSQIELRLLAHLADVPSLRSAFAQDEDIHSRTAADIF-HL----EPGKV-------DK-- 786

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       RR+AK +NF I YG +  GLA    ++  EAK  +D ++ +   + T  
Sbjct: 787  ---------EARRRAKTINFGIIYGMSAFGLAARLGIAPGEAKGIIDAYFAQYPGIRTEM 837

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K+E+RI+ +V T  GR      I S   ++R + ERAAIN P QG AA++   AM  
Sbjct: 838  ERLKEEARINGYVLTPFGRKLWIDGISSKDMARRGNAERAAINAPFQGGAAEIIKRAMAR 897

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            + K  R   L  K+LLQVHDE++ E P    E    +V + M         LRV L  + 
Sbjct: 898  MPKALREAGLQAKMLLQVHDELLFEVPESEVEKTSVVVKQVMEN----VAELRVPLRAEI 953

Query: 1114 KCAQNWYSA 1122
                NW  A
Sbjct: 954  GQGANWAEA 962



 Score = 48.5 bits (114), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 120/327 (36%), Gaps = 84/327 (25%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPE----ADFGNGKSCIWVDLLDGGGR---- 422
           A DTE   +D        H +++  S+   P        G+G      D+L+        
Sbjct: 371 ALDTETDSLDAL------HAKLVGISLAIAPGRACYIPLGHGPKPGNGDMLEAAPEAPVQ 424

Query: 423 ----DLLNEFAPFFEDPSIKKVWHNYSFDNHVL-------ENYGLKVSGFHADTMHMARL 471
               + L+   P  EDP   KV HN  +D  VL        N G+ VS    DTM ++  
Sbjct: 425 IPLAEALSALRPMLEDPGTLKVLHNAKYDLEVLGRPLAEGANTGIDVSPVD-DTMLISYS 483

Query: 472 WDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
            D+ R   G                                  M ++S++ + G   +  
Sbjct: 484 MDAGRHGHG----------------------------------MDELSLRHL-GHSPIPY 508

Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG 591
           D   G      P  +++ ++     +Y+A D+  TL+L++ LK +L     + DG     
Sbjct: 509 DQVTGTGRARIPFSQVELDK---ATAYAAEDADVTLRLWQLLKPRL-----RTDGA---- 556

Query: 592 KSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCP 651
                 Y++  +    +L  ME EG+ VD   L+ I +   A       R  + A +   
Sbjct: 557 ---LALYEQVERRMIGVLRDMEMEGIKVDGTELARIGEDFSARMITLEQRIHELAGRP-- 611

Query: 652 DAKYMNVGSDTQLRQLLFG--GKPNSK 676
                NVGS  QL ++LF   G P  K
Sbjct: 612 ----FNVGSPKQLGEILFDEMGLPGGK 634


>gi|398830519|ref|ZP_10588705.1| DNA polymerase I [Phyllobacterium sp. YR531]
 gi|398213956|gb|EJN00540.1| DNA polymerase I [Phyllobacterium sp. YR531]
          Length = 1002

 Score =  189 bits (480), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 114/302 (37%), Positives = 156/302 (51%), Gaps = 26/302 (8%)

Query: 823  RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  +  T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY Q+ELR+
Sbjct: 724  RVHTSYAMAATSTGRLSSSEPNLQNIPVRTSEGRKIRTAFIAAPGNKLISADYSQIELRV 783

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF    D H+ TA  M+                       VP+  +  
Sbjct: 784  LAHVAEIPQLTQAFADSIDIHAMTASEMFG----------------------VPV--EGM 819

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +  EEA + +  +++    +  + EA K  +
Sbjct: 820  PSEVRRRAKAINFGIIYGISAFGLANQLSIPREEASQYIRTYFDRFPGIKDYMEATKAFA 879

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R   +V T+ GR   +P I+S     R   ERAAIN P+QGSAAD+   AM+ +      
Sbjct: 880  RQHGYVETIFGRRAHYPEIRSSNPQLRAFNERAAINAPIQGSAADIIRRAMVRMDAALVE 939

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
             +L  ++LLQVHDE++ E   E  +    ++ E M        +L V L VDA+ A NW 
Sbjct: 940  AKLSARMLLQVHDELVFETSDEEVDATLPVIREVMENAAMPAISLSVPLQVDARAASNWE 999

Query: 1121 SA 1122
            +A
Sbjct: 1000 AA 1001



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 104/243 (42%), Gaps = 61/243 (25%)

Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
           P  ED S+ K+ H+  ++  V+  +G+ +     DTM ++ + D+    EG +S+++L  
Sbjct: 478 PMLEDASVLKIAHSMKYEWLVMHRHGIDLRPVD-DTMLISYVLDAG---EGHHSMDSLC- 532

Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
           DR                      ++G   ++ KD+ G         +GK S      E+
Sbjct: 533 DR----------------------WLGHKPLAYKDLIG---------SGKSSLTFDKVEI 561

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
           +R        Y+A D+  TL+L++ LK +L+      DG       +   Y+   +P   
Sbjct: 562 ERATE-----YAAEDADVTLRLWRLLKPRLVA-----DG-------LASVYERLERPLIP 604

Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
           +L +ME  G+ VDR+ LS +         A      K A +       +N+GS  Q+  +
Sbjct: 605 VLARMEERGISVDRQILSRLSGDLAQSAAAIEEEIYKLAGEK------INIGSPKQMGDI 658

Query: 668 LFG 670
           LFG
Sbjct: 659 LFG 661


>gi|206900363|ref|YP_002250598.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
 gi|38146985|gb|AAR11877.1| DNA polymerase I [Dictyoglomus thermophilum]
 gi|206739466|gb|ACI18524.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
          Length = 856

 Score =  189 bits (479), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 113/302 (37%), Positives = 160/302 (52%), Gaps = 24/302 (7%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+ + GRVH   N   T TGR+S+  PNLQN P   ++  KIR+AF++  G  L+  DY 
Sbjct: 576  VNPQTGRVHTKFNPTGTATGRISSSEPNLQNIPIKSEEGRKIRRAFVSEDGYFLVSLDYS 635

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+    ++ AF+ G D H RTA  ++      V+                 
Sbjct: 636  QIELRIMAHLSQEPKLISAFQKGEDIHRRTASEIFGVPEEEVDD---------------- 679

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            LL       R +AK +NF I YG +  GL+    ++ EEA+K +D ++     V  + + 
Sbjct: 680  LL-------RSRAKAVNFGIIYGISSFGLSETVSITPEEAEKFIDSYFKHYPRVKLFIDK 732

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
               E+R   +V TL GR R  P IKS+ +  RN  ER AIN P+QG+AAD+   AM+EI 
Sbjct: 733  TIHEAREKLYVKTLFGRKRYIPEIKSINKQVRNAYERIAINAPIQGTAADIIKLAMIEIY 792

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
            K    K L  ++LLQ+HDE+ILE P E  E    +  E M K       L V++SV    
Sbjct: 793  KEIENKNLKSRILLQIHDELILEVPEEEMEFTPLMAKEKMEKVVELSVPLVVEISVGKNL 852

Query: 1116 AQ 1117
            A+
Sbjct: 853  AE 854


>gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
 gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
          Length = 877

 Score =  189 bits (479), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 115/309 (37%), Positives = 171/309 (55%), Gaps = 29/309 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            V+ + G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+ + PG ++  ADY
Sbjct: 596  VNYETGKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEPGWAIFAADY 655

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+AN + +++AF    D H++TAM ++ H+ NA E                
Sbjct: 656  SQIELRVLAHIANDEKLIEAFIEDMDIHTKTAMEVF-HV-NANEVT-------------- 699

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                   ++ RR AK +NF I YG +  GL++   ++ +EA K +D +      V  + +
Sbjct: 700  -------SNMRRHAKAVNFGIVYGISDYGLSQSLGITRKEAGKFIDRYLESYPGVKQYMD 752

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
                +++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 753  DIIHDAKQKGYVSTLLHRRRYLPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDM 812

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
            +   R +EL  +LLLQVHDE+I E P +  E  K IV + M         L+V L VD  
Sbjct: 813  ADRLRKEELKARLLLQVHDELIFEVPEDEIETLKKIVPDVMENAV----ELKVPLKVDYS 868

Query: 1115 CAQNWYSAK 1123
                W+ AK
Sbjct: 869  FGPTWFDAK 877


>gi|336114638|ref|YP_004569405.1| DNA polymerase I [Bacillus coagulans 2-6]
 gi|335368068|gb|AEH54019.1| DNA polymerase I [Bacillus coagulans 2-6]
          Length = 888

 Score =  189 bits (479), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 114/320 (35%), Positives = 177/320 (55%), Gaps = 35/320 (10%)

Query: 812  LQGSNVSG------KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAV 864
            LQ + + G      ++G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+  
Sbjct: 596  LQSTYIEGLLKVVHRDGKVHTRFNQALTQTGRLSSTDPNLQNIPIRMEEGRKIRQAFVPS 655

Query: 865  PGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
                LI + DY Q+ELR+LAH++  + +++AF+ G D H++TAM ++ H++         
Sbjct: 656  EEGWLIFSSDYSQVELRVLAHISGDEKLIEAFREGMDIHTKTAMEVF-HVK--------- 705

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
                 E+  P           RR+AK +NF I YG +  GL+++  ++ +EA + +  ++
Sbjct: 706  ----AEEVTP---------EMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGEFIKRYF 752

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 V  + +   +E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSA
Sbjct: 753  ASYPRVKEYMDETVREAKQKGYVSTLLKRRRYLPEISSRNFNLRSFAERTAMNTPIQGSA 812

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN 1103
            AD+   AM++++K  + ++L  +LLLQVHDE+I E P E  EV K IV E M        
Sbjct: 813  ADIIKKAMIDMAKRLKKEKLRARLLLQVHDELIFEAPEEEIEVLKEIVPEVMEHAV---- 868

Query: 1104 NLRVDLSVDAKCAQNWYSAK 1123
            +L   L VD+     W+ AK
Sbjct: 869  DLAAPLKVDSAYGPTWFDAK 888


>gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42]
 gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA poyimerase I protein [Rhizobium etli
            CFN 42]
          Length = 999

 Score =  189 bits (479), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 158/302 (52%), Gaps = 30/302 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 719  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 778

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 779  LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 817

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK  +R
Sbjct: 818  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 875

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM+++     L 
Sbjct: 876  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKMEPA--LA 933

Query: 1062 ELGW----KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQ 1117
            E G     ++LLQVHDE+I E   E  E A  I+V  M         +RV L VDA+ A 
Sbjct: 934  EAGLAERVRMLLQVHDELIFEVEDEDVEKAMPIIVSVMENATMPALEMRVPLKVDARAAT 993

Query: 1118 NW 1119
            NW
Sbjct: 994  NW 995



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 99/251 (39%), Gaps = 61/251 (24%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED S+ KV  N  +D  +++ YG++   F  DTM ++ + D+     G 
Sbjct: 465 RDALPRLKALLEDESVLKVAQNLKYDYLLMKRYGVETKSFD-DTMLISYVLDAG---TGA 520

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  KD+ G         +GK +
Sbjct: 521 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 548

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L                +   Y+
Sbjct: 549 ITFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 591

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   +L +ME  G+ VDR+ LS      R   E A    R     +    +  N+G
Sbjct: 592 RLERPLLPVLARMEARGITVDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIG 645

Query: 660 SDTQLRQLLFG 670
           S  QL  +LFG
Sbjct: 646 SPKQLGDILFG 656


>gi|295706848|ref|YP_003599923.1| DNA polymerase I [Bacillus megaterium DSM 319]
 gi|294804507|gb|ADF41573.1| DNA polymerase I [Bacillus megaterium DSM 319]
          Length = 875

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/336 (34%), Positives = 180/336 (53%), Gaps = 30/336 (8%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQP 848
            D I  + +   +  L S +I  L+   +   +G+VH   N   T+TGRLS+  PNLQN P
Sbjct: 568  DIIPEILQYRQLGKLQSTYIEGLK-KVIHESDGKVHTRFNQTLTQTGRLSSVDPNLQNIP 626

Query: 849  ALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
               ++  KIR AF+ + PG  +  ADY Q+ELR+LAH+A+ + ++DAFK   D H++TAM
Sbjct: 627  IRLEEGKKIRGAFVPSQPGWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHTKTAM 686

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
            +++ H+                        ++  A+ RR+AK +NF I YG +  GL++ 
Sbjct: 687  DVF-HVER----------------------EEVTANMRRQAKAVNFGIVYGISDYGLSQS 723

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ + A   ++ +      V  + +   ++++   +V TLL R R  P I S   + R
Sbjct: 724  LGITRKAAATFIERYLKSFPGVQEYMDTIVRDAKEKGYVTTLLHRRRYLPEITSRNFNLR 783

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVA 1087
            +  ER A+NTP+QG+AAD+   AM+E+ K  + + L  KLLLQVHDE+I E P E  ++ 
Sbjct: 784  SFAERTAMNTPIQGTAADIIKKAMIEMDKRLKDENLQAKLLLQVHDELIFEAPEEEIKIL 843

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + IV E M         L V L VD    + WY AK
Sbjct: 844  EKIVPEVMENAL----ELEVPLKVDYSYGKTWYEAK 875


>gi|395767572|ref|ZP_10448105.1| DNA polymerase I [Bartonella doshiae NCTC 12862]
 gi|395413935|gb|EJF80388.1| DNA polymerase I [Bartonella doshiae NCTC 12862]
          Length = 968

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 163/306 (53%), Gaps = 24/306 (7%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S +  K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA  G+ L+ AD
Sbjct: 682  SYIFPKTGRVHTNYSLATTSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIAPKGHLLLSAD 741

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELRILAH+A+  ++ +AF  G D H+ TA  M+           V +E    D   
Sbjct: 742  YSQIELRILAHVADITALKEAFAQGQDIHAITASQMF----------GVAIEGMPSDI-- 789

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       RR+AK +NF I YG +  GLA    +S +EA + + L++     +  + 
Sbjct: 790  -----------RRRAKAINFGIIYGISAFGLANQLGLSRQEAGRYIQLYFERFPGIKDYM 838

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K  +R + +V T+ GR   +P IK+     R   ERAAIN P+QGSAAD+   AM++
Sbjct: 839  EETKDFARKNGYVETIFGRRIHYPEIKAANLQVRAFNERAAINAPIQGSAADIIRRAMIQ 898

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            +      ++L  K+LLQVHDE+I E P + +E    +V + M        +L V L V  
Sbjct: 899  MEDTLEKEKLSAKMLLQVHDELIFEVPEDESEKTMTLVKKVMENATMPVLSLSVPLEVKV 958

Query: 1114 KCAQNW 1119
              A+NW
Sbjct: 959  MAAKNW 964



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 152/379 (40%), Gaps = 92/379 (24%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPE-ADFGNGKSCIWVDLLDGGGRDL----- 424
           A DTE   +D  Q       +++ FS+   PE A +         D L G GR +     
Sbjct: 382 AFDTETTSLDPLQ------AKLVGFSLALQPEKAAYVPLAHIEGGDDLLGSGRIVGQIEI 435

Query: 425 ---LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
              L    P  E+ ++ K+  N  +D  V++ Y + +  F  DTM ++   D+   T   
Sbjct: 436 EKALALLKPILENDAVLKIGQNIKYDWLVMKQYDIVIRSFD-DTMLLSYALDAGVLT--- 491

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
           +S++AL+                       E ++G   +S KD+    K        KI+
Sbjct: 492 HSMDALS-----------------------ERWLGHKPVSYKDLTHNGK--------KIT 520

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
           + A V+  Q         Y+A D+  TL+L++ LK +++             + M   Y+
Sbjct: 521 SFAQVDLKQAT------LYAAEDADITLRLWQVLKPQIV------------AQGMTRIYE 562

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P  E+L +ME  G+LVDR+ L       R   E A   F      +    +  N+ 
Sbjct: 563 RLDRPLIEVLARMEERGILVDRQIL------LRLSGELAQAAFILEEEIYQLAGERFNLA 616

Query: 660 SDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSK---FRNIT 711
           S  QL  +LFG     G   +K    S   + +      E + AEG   P K   +R + 
Sbjct: 617 SPKQLGDILFGKMGLLGGAKTKGGQWSTSAQTL------EELAAEGHILPRKVIDWRQLA 670

Query: 712 -LRSIGVD-LPTEMYTATG 728
            L+S   D LP+ ++  TG
Sbjct: 671 KLKSTYADALPSYIFPKTG 689


>gi|403529939|ref|YP_006664468.1| DNA polymerase I [Bartonella quintana RM-11]
 gi|403232011|gb|AFR25754.1| DNA polymerase I [Bartonella quintana RM-11]
          Length = 968

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/309 (37%), Positives = 164/309 (53%), Gaps = 24/309 (7%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S +  K GR+H + ++  T TGRLS+  PNLQN P    +  KIR AFIA  G+ L+ AD
Sbjct: 682  SYILSKTGRIHTNYSLAITSTGRLSSSEPNLQNIPVRTTEGRKIRTAFIAPKGHMLLSAD 741

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELRILAH+A+  ++ +AF  G D H+ TA  M+           V +E    D   
Sbjct: 742  YSQIELRILAHIADITALKEAFAQGQDIHAITASQMF----------GVAIEGMNSDI-- 789

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       RR+AK +NF I YG +  GLA    +S +EA   + L++     +  + 
Sbjct: 790  -----------RRRAKAINFGIIYGISAFGLANQLGLSRQEASHYIQLYFERFPGIKDYM 838

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K  +  + +V T+ GR   +P IK+     R+  ERAAIN P+QGSAAD+   AM++
Sbjct: 839  EMTKNFACRNGYVETIFGRRIHYPEIKAANPQVRSFNERAAINAPIQGSAADIIRRAMIQ 898

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            +      ++L  K+LLQVHDE+I E P + +E   A+V + M        +L V L V  
Sbjct: 899  MEDALEKEKLSAKMLLQVHDELIFEVPEDESERTMALVKKVMENATMPVLSLSVPLEVKV 958

Query: 1114 KCAQNWYSA 1122
              AQNW  A
Sbjct: 959  MAAQNWEEA 967



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 127/317 (40%), Gaps = 73/317 (23%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           R  L    P  ED ++ K+  N  +D  V++ YG+ +  F  DTM ++   D        
Sbjct: 436 RKALTLLKPILEDQAVLKIGQNIKYDWLVMKQYGVVIRCFD-DTMLLSYALDVG------ 488

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
               ALT +   +SE    ++               I+ KD+    K        KI++ 
Sbjct: 489 ----ALTHNMDALSERWLGHKP--------------IAYKDLTHNGK--------KITSF 522

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
           A V+  Q         Y+A D+  TL+L++ LK +L+             + M   Y+  
Sbjct: 523 AQVDLKQAT------LYAAEDADITLRLWQVLKPQLV------------ARGMTKVYERL 564

Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            +P  E+L +ME  G+LVD++ L       R   E A   F      +    +  N+ S 
Sbjct: 565 DRPLVEVLARMEERGILVDKQIL------LRLSGELAQAVFILEEEIYQLAGEKFNLASP 618

Query: 662 TQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSK---FRNIT-L 712
            QL  +LFG     G   +K    S   + +      E + AEG   P K   +R +  L
Sbjct: 619 KQLGDILFGKMSLPGGTKTKSGQWSTSAQTL------EELAAEGHILPRKIIDWRQLAKL 672

Query: 713 RSIGVD-LPTEMYTATG 728
           +S   D LP+ + + TG
Sbjct: 673 KSTYADALPSYILSKTG 689


>gi|423718989|ref|ZP_17693171.1| DNA polymerase I [Geobacillus thermoglucosidans TNO-09.020]
 gi|383367892|gb|EID45167.1| DNA polymerase I [Geobacillus thermoglucosidans TNO-09.020]
          Length = 877

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/303 (37%), Positives = 172/303 (56%), Gaps = 29/303 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAFI + P   +  ADY Q+ELR
Sbjct: 602  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFIPSEPDWVIFSADYSQIELR 661

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+AN ++++DAF+ G D H++TAM+++ H+               E+  P       
Sbjct: 662  VLAHIANDENLIDAFRHGLDIHTKTAMDIF-HVSK-------------EEVTP------- 700

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GL+++  ++ +EA + +  ++     V  + +   +E+
Sbjct: 701  --NMRRQAKAVNFGIVYGISDYGLSQNLNITRKEAAEFIKRYFEIFPGVKQYMKDIVQEA 758

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++SK  + 
Sbjct: 759  KQKGYVTTLLHRRRYLPDITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDLSKRLQK 818

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
            + +  ++LLQVHDE+ILE P +  E  + IV E M         LRV L VD      WY
Sbjct: 819  ENMKARMLLQVHDELILEAPKDEIERLQQIVPEVMENAV----QLRVPLKVDYHFGPTWY 874

Query: 1121 SAK 1123
             AK
Sbjct: 875  DAK 877


>gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
 gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
          Length = 1001

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/354 (35%), Positives = 180/354 (50%), Gaps = 27/354 (7%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN 829
            GA +++ ++   E  A E     S + E   +  L S +   L G  ++ +  RVH S +
Sbjct: 673  GAWSTSAQVL--EDLAAEGHPLPSKIVEWRQLSKLKSTYTDALPGY-INPETKRVHTSYS 729

Query: 830  IN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
            +  T TGRLS+  PNLQN P   +   KIRQAFIA  G  LI ADY Q+ELR+LAH+A+ 
Sbjct: 730  LAATTTGRLSSSEPNLQNIPVRTEAGRKIRQAFIAEKGQKLISADYSQIELRVLAHMADI 789

Query: 889  KSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKA 948
              +  AF+ G D H+ TA  M+      +E         G D    P++       RR+A
Sbjct: 790  PQLKKAFEDGLDIHAMTASEMF---GTPIE---------GMD----PMV-------RRQA 826

Query: 949  KMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHT 1008
            K +NF I YG +  GLA    +S  EA   +  ++     +  + EA KK+   D +V T
Sbjct: 827  KAINFGIIYGISAFGLANQLGISRGEAGDYIKTYFQRFPGIKDYMEAVKKQVHADGYVTT 886

Query: 1009 LLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLL 1068
            + GR   +P + +   + R   ERAAIN P+QGSAAD+   AM+ +       +L  ++L
Sbjct: 887  IFGRKAHYPEVNTKNPNMRAFYERAAINAPIQGSAADILRRAMVRMEDRLTASKLDAQML 946

Query: 1069 LQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            LQVHDE+I E P +  E    ++ + M    +      V L VDA+ A NW  A
Sbjct: 947  LQVHDELIFEVPEDQVEATIPLIKDVMENACDPALKFSVPLQVDARAADNWDEA 1000



 Score = 48.1 bits (113), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 99/258 (38%), Gaps = 63/258 (24%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           D L    P  ED  I K+  N  +D  V+  +G+ V  +  DTM ++   D+ +   GG 
Sbjct: 470 DALKALKPMLEDRGILKIAQNLKYDWLVMTRHGVDVDPYD-DTMLLSYTVDAGK---GGN 525

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIST 540
            ++ L+                       E ++G   I  K++ G  K          S 
Sbjct: 526 GMDELS-----------------------ERWLGHKPIPFKEVCGSGK----------SM 552

Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
           I       +   +   +Y+A D+  TL+L+ +LK +L                M   Y+ 
Sbjct: 553 IT----FDKVAIDKATAYAAEDADVTLRLWLTLKPRLAS------------DHMATVYET 596

Query: 601 YWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
             +P   +L +ME  G+ VDR+ LS +         A  +   + A       +  NVGS
Sbjct: 597 LERPMVPVLARMEKRGISVDRQMLSRLSGDFAQGAAALESEIYELA------GETFNVGS 650

Query: 661 DTQLRQLLFG--GKPNSK 676
             QL  +LFG  G P  K
Sbjct: 651 PKQLGDILFGKMGLPGGK 668


>gi|190889822|ref|YP_001976364.1| DNA polymerase I [Rhizobium etli CIAT 652]
 gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polymerase I protein [Rhizobium etli
            CIAT 652]
          Length = 997

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 158/302 (52%), Gaps = 30/302 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 717  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 776

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 777  LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 815

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK  +R
Sbjct: 816  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 873

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM++I     L 
Sbjct: 874  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPA--LA 931

Query: 1062 ELGW----KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQ 1117
            E G     ++LLQVHDE+I E   E  + A  I+V  M         +RV L VDA+ A 
Sbjct: 932  EAGLAERVRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVDARAAT 991

Query: 1118 NW 1119
            NW
Sbjct: 992  NW 993



 Score = 60.5 bits (145), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 61/251 (24%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED S+ KV  N  +D  +L+ YG++   F  DTM ++ + D+     G 
Sbjct: 463 RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETKSFD-DTMLISYVLDAG---TGA 518

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  KD+ G         +G+ +
Sbjct: 519 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGRAN 546

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L+               +   Y+
Sbjct: 547 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRLV------------AAGLTSVYE 589

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   +L +ME  G+ VDR+ LS      R   E A    R     +    +  N+G
Sbjct: 590 RLERPLLPVLARMEARGITVDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIG 643

Query: 660 SDTQLRQLLFG 670
           S  QL  +LFG
Sbjct: 644 SPKQLGDILFG 654


>gi|336234370|ref|YP_004586986.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
 gi|335361225|gb|AEH46905.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
          Length = 878

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/303 (37%), Positives = 172/303 (56%), Gaps = 29/303 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAFI + P   +  ADY Q+ELR
Sbjct: 603  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFIPSEPDWVIFSADYSQIELR 662

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+AN ++++DAF+ G D H++TAM+++ H+               E+  P       
Sbjct: 663  VLAHIANDENLIDAFRHGLDIHTKTAMDIF-HVSK-------------EEVTP------- 701

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GL+++  ++ +EA + +  ++     V  + +   +E+
Sbjct: 702  --NMRRQAKAVNFGIVYGISDYGLSQNLNITRKEAAEFIKRYFEIFPGVKQYMKDIVQEA 759

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++SK  + 
Sbjct: 760  KQKGYVTTLLHRRRYLPDITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDLSKRLQK 819

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
            + +  ++LLQVHDE+ILE P +  E  + IV E M         LRV L VD      WY
Sbjct: 820  ENMKARMLLQVHDELILEAPKDEIERLQQIVPEVMENAV----QLRVPLKVDYHFGPTWY 875

Query: 1121 SAK 1123
             AK
Sbjct: 876  DAK 878


>gi|424897758|ref|ZP_18321332.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2297]
 gi|393181985|gb|EJC82024.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2297]
          Length = 1075

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/308 (38%), Positives = 160/308 (51%), Gaps = 30/308 (9%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  +  RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY 
Sbjct: 789  VHAETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYS 848

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A    +  AF+ G D H+ TA  M+         G  +    GE      
Sbjct: 849  QIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------ 893

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+
Sbjct: 894  --------VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMES 945

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            RK  +R   +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM+++ 
Sbjct: 946  RKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKME 1005

Query: 1056 KNARLKELGW----KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSV 1111
                L E G     ++LLQVHDE+I E   E  E A  I+V  M         +RV L V
Sbjct: 1006 PA--LAEAGLADRVRMLLQVHDELIFEVEDEDVEKAMPIIVSVMENATMPALEMRVPLRV 1063

Query: 1112 DAKCAQNW 1119
            DA+ A NW
Sbjct: 1064 DARAASNW 1071



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 71/256 (27%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED ++ KV  N  +D  +++ YG++   F  DTM ++ + D+     G 
Sbjct: 541 RDALPRLKALLEDAAVLKVAQNLKYDYLLMKRYGVETRSFD-DTMLISYVLDAG---TGA 596

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  KD+ G         +GK +
Sbjct: 597 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 624

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L                +   Y+
Sbjct: 625 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRLT------------AAGLTSVYE 667

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
              +P   +L +ME  G+ VDR+ LS +     +  AR E E  V    ++         
Sbjct: 668 RLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERF--------- 718

Query: 655 YMNVGSDTQLRQLLFG 670
             N+GS  QL  +LFG
Sbjct: 719 --NIGSPKQLGDILFG 732


>gi|157833899|pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
          Length = 832

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/345 (34%), Positives = 178/345 (51%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRL 
Sbjct: 517  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLC 575

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
               PNLQN P       +IR+ FIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 576  CCDPNLQNIPVRTPLGQRIRRGFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 635

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 636  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 672

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 673  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 732

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQVHDE++LE
Sbjct: 733  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLEEMGARMLLQVHDELVLE 790

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E AE    +  E M     G   L V L V+    ++W SAK
Sbjct: 791  APKERAEAVARLAKEVM----EGVYPLAVPLEVEVGIGEDWLSAK 831


>gi|210077511|gb|ACJ07020.1| PolI [Thermus sp. Fiji3.A1]
          Length = 831

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/345 (34%), Positives = 176/345 (51%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL G  V  + GR+H   N   T TGRLS
Sbjct: 516  AVLEALREAHPIVEKILQHRELSKLKSTYIDPLPGL-VHPRTGRLHTRFNQTATATGRLS 574

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 575  SSDPNLQNIPVRTPLGQRIRKAFVAEEGFLLVALDYSQIELRVLAHLSGDENLIRVFREG 634

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                          RR AK +NF + YG
Sbjct: 635  KDIHTQTASWMFGVPLEAVDPRM-----------------------RRAAKTVNFGVLYG 671

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   ++ ++    +V  W E   +  R   +V TL GR R  P 
Sbjct: 672  MSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEGGRQRGYVETLFGRRRYVPD 731

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            + +  +S R   ER A N PVQG+AAD+   AM+++    RLKE G ++LLQVHDE++LE
Sbjct: 732  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLKETGARMLLQVHDELLLE 789

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P + AE   A+  E M     G   L V L V+    ++W SAK
Sbjct: 790  APKDRAEAVAALAKEVM----EGVYPLAVPLEVEVGIGEDWLSAK 830


>gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
 gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
          Length = 892

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/319 (35%), Positives = 167/319 (52%), Gaps = 36/319 (11%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            ++  ILP        + GR+H S N   T TGRLS+  PNLQN P   ++  +IR+AF+ 
Sbjct: 608  LAELILP--------ETGRIHTSFNQTATATGRLSSTDPNLQNIPIRTEEGRQIRKAFVP 659

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
             PG + + ADY Q+ELRILAH +    +++AF+   D H+RTA  ++          Q+ 
Sbjct: 660  RPGWTFVSADYSQVELRILAHYSQDPILIEAFENDEDIHTRTASEVF----------QLF 709

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
             E   ED              RR+AK +NF I YG +P GLARD  +S + AK  +D ++
Sbjct: 710  PEMITEDV-------------RRQAKAINFGIVYGISPFGLARDLGISQKMAKNYMDSYF 756

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
            +    V  + +    ++R      T+ GR R  P I S  R+ + + ERAAINTP+QG+A
Sbjct: 757  SRYSRVKEFMDKAIADARETGQTRTMFGRIRYLPDIDSPNRTLQGYAERAAINTPIQGTA 816

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN 1103
            AD+   AM+   K    ++L   +LL VHDE++LE P +  +   A+V + M        
Sbjct: 817  ADIMKLAMIATEKALAKEKLVSVMLLSVHDEIVLECPPDEVKTVSALVADIM----ENVC 872

Query: 1104 NLRVDLSVDAKCAQNWYSA 1122
            +L V L V+     NW  A
Sbjct: 873  DLAVRLKVNVAQGSNWADA 891



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 97/248 (39%), Gaps = 60/248 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L   AP FE+  I K+  N  +D  VL   G K+ G   DTM  A L + +RR+   Y 
Sbjct: 365 VLRILAPAFENTKITKIGQNVKYDWTVLSRCGFKIDGPVFDTMIAAYLLNPTRRS---YG 421

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKISTI 541
           L+ L  D                       ++    IS +D+ G       G   K  + 
Sbjct: 422 LDRLAAD-----------------------YLNHRMISYQDVTGT------GKNAKCFSA 452

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
            P+EE         I Y+A D+  T  L++ L+K+L +              +F+  +  
Sbjct: 453 VPLEE--------AIPYAAEDADITFSLHRLLEKELKQ------------GGLFELLETI 492

Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
             P   +L+ ME  G+ VDRE L+ + K    + E         A +        N+ S 
Sbjct: 493 EMPLVPVLMHMEMAGVAVDREALAALSKELEGQLEKLEGEIYGLAGET------FNINSP 546

Query: 662 TQLRQLLF 669
            QL  +LF
Sbjct: 547 QQLGVILF 554


>gi|404317021|ref|ZP_10964954.1| DNA polymerase I [Ochrobactrum anthropi CTS-325]
          Length = 976

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/299 (38%), Positives = 156/299 (52%), Gaps = 26/299 (8%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN L+ ADY Q+ELR+
Sbjct: 698  RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLVSADYSQIELRV 757

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+                       VP+  +  
Sbjct: 758  LAHVADIAQLKQAFADGMDIHAMTASEMFG----------------------VPV--EGM 793

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + EA K  +
Sbjct: 794  PSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFA 853

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P I++     R   ERAAIN P+QGSAAD+   AM+ +      
Sbjct: 854  RENGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGSAADIIRRAMIRMEDALAE 913

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+ A NW
Sbjct: 914  QNLAARMLLQVHDELIFEVPDSEVEKTIPVVRHIMENAAMPAVSLAVPLHVDARAAHNW 972



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 126/319 (39%), Gaps = 88/319 (27%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGP--------EADFGNGKSCIWVDLLDGG 420
           V A DTE   +D  Q       E++ FS+   P        +   G G      DLL GG
Sbjct: 388 VLAFDTETTSLDPMQ------AELVGFSLALAPGRAAYIPLQHKSGAG------DLLGGG 435

Query: 421 ---GRDLLNE----FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
              G+  L+E         ED S+ K+  N  +D  V+  +G+    F  DTM ++ + D
Sbjct: 436 MVEGQIPLDEALAALKIVLEDASVLKIAQNMKYDWLVMRRHGINTVSFD-DTMLISYVLD 494

Query: 474 SSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKK 531
           +     G + ++ L+                       E ++G   I  KD+ G      
Sbjct: 495 AG---TGSHGMDPLS-----------------------ERWLGHTPIPYKDVAG------ 522

Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG 591
              +GK +    + +L R       +Y+A D+  TL+L++ LK +L              
Sbjct: 523 ---SGKSAVSFDMVDLDRA-----TAYAAEDADVTLRLWQVLKPRL------------AA 562

Query: 592 KSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCP 651
           + +   Y+   +P  ++L +ME  G+ VDR+ LS +         A  +   + A +   
Sbjct: 563 EGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAYEDEIYELAGER-- 620

Query: 652 DAKYMNVGSDTQLRQLLFG 670
                N+GS  QL  +LFG
Sbjct: 621 ----FNIGSPKQLGDILFG 635


>gi|407778269|ref|ZP_11125534.1| DNA polymerase I [Nitratireductor pacificus pht-3B]
 gi|407299950|gb|EKF19077.1| DNA polymerase I [Nitratireductor pacificus pht-3B]
          Length = 977

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 160/307 (52%), Gaps = 29/307 (9%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA  G  LI ADY 
Sbjct: 692  INPETKRVHTSYAMASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFIAPAGAKLISADYS 751

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                   D P   
Sbjct: 752  QIELRVLAHVADIPELKKAFADGLDIHAMTASEMF-------------------DVP--- 789

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             ++   A  RR+AK +NF I YG +  GLA    +  EEA   +  ++     +  + + 
Sbjct: 790  -VEGMPAEVRRRAKAINFGIIYGISAFGLANQLAIPREEASAYIKRYFERFPGIKDYMDD 848

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADV---AMCAML 1052
             K ++R + +V T+ GR   +P I+S     R   ERAAIN P+QGSAAD+   AM  M 
Sbjct: 849  TKAQARANGYVETIFGRRAHYPEIRSSNPQLRAFNERAAINAPIQGSAADIIRRAMARMD 908

Query: 1053 EISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
            E   NA L ++  ++LLQVHDE+I E P E  E A  ++   M        NL V L VD
Sbjct: 909  EALLNAGLDDV--RMLLQVHDELIFEAPEEKVEKAIPVICHVMENAALPARNLSVPLQVD 966

Query: 1113 AKCAQNW 1119
            A+ A NW
Sbjct: 967  ARAADNW 973



 Score = 43.9 bits (102), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 99/251 (39%), Gaps = 56/251 (22%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           +D L+       DPS+ K+  N  +D  ++   G+++     DTM ++            
Sbjct: 439 KDALDAIRQVMADPSVLKIGQNLKYDWLLMYRLGVEIVSCD-DTMLIS------------ 485

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
           Y L+A TG    +S    A           E ++G   I  K++ G         +G+  
Sbjct: 486 YVLDAGTGSHGTVSHGMDALS---------ERWLGHAPIPYKELTG---------SGRNQ 527

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + +L+R       +Y+A D+  TL+L++ LK +L                +   Y+
Sbjct: 528 VTFDMVDLERA-----TAYAAEDADVTLRLWQVLKPRL------------AAHGLTSVYE 570

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   ++ +ME  G+ VDR+ LS +            +   + A +         +G
Sbjct: 571 RLERPLIPVICRMEHRGIEVDRQILSRLSGDFAQTAAGIEDEIYQLAGER------FTIG 624

Query: 660 SDTQLRQLLFG 670
           S  QL ++LFG
Sbjct: 625 SPKQLGEILFG 635


>gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3]
          Length = 732

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 158/302 (52%), Gaps = 30/302 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 452  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 511

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 512  LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 550

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK  +R
Sbjct: 551  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 608

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM++I     L 
Sbjct: 609  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPA--LA 666

Query: 1062 ELGW----KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQ 1117
            E G     ++LLQVHDE+I E   E  + A  I+V  M         +RV L VDA+ A 
Sbjct: 667  EAGLAERVRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVDARAAT 726

Query: 1118 NW 1119
            NW
Sbjct: 727  NW 728



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 99/251 (39%), Gaps = 61/251 (24%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED S+ KV  N  +D  +L+ YG++   F  DTM ++ + D+     G 
Sbjct: 198 RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETKSFD-DTMLISYVLDAG---TGA 253

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  KD+ G         +G+ +
Sbjct: 254 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGRAN 281

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L                +   Y+
Sbjct: 282 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 324

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   +L +ME  G+ VDR+ LS      R   E A    R     +    +  N+G
Sbjct: 325 RLERPLLPVLARMEARGITVDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIG 378

Query: 660 SDTQLRQLLFG 670
           S  QL  +LFG
Sbjct: 379 SPKQLGDILFG 389


>gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
 gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
          Length = 878

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/303 (37%), Positives = 172/303 (56%), Gaps = 29/303 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAFI + P   +  ADY Q+ELR
Sbjct: 603  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFIPSEPDWVIFSADYSQIELR 662

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+AN ++++DAF+ G D H++TAM+++ H+               E+  P       
Sbjct: 663  VLAHIANDENLIDAFRHGLDIHTKTAMDIF-HVSK-------------EEVTP------- 701

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GL+++  ++ +EA + +  ++     V  + +   +E+
Sbjct: 702  --NMRRQAKAVNFGIVYGISDYGLSQNLNITRKEAAEFIKRYFEIFPGVKQYMKDIVQEA 759

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++SK  + 
Sbjct: 760  KQKGYVTTLLHRRRYLPDITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDLSKRLQK 819

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
            + +  ++LLQVHDE+ILE P +  E  + IV E M         LRV L VD      WY
Sbjct: 820  ENMKARMLLQVHDELILEAPKDEIERLQQIVPEVMENAV----QLRVPLKVDYHFGPTWY 875

Query: 1121 SAK 1123
             AK
Sbjct: 876  DAK 878


>gi|405377039|ref|ZP_11030987.1| DNA polymerase I [Rhizobium sp. CF142]
 gi|397326463|gb|EJJ30780.1| DNA polymerase I [Rhizobium sp. CF142]
          Length = 999

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 160/302 (52%), Gaps = 30/302 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 719  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISSPGHKLISADYSQIELRV 778

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    ++ AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 779  LAHVAEIPQLVRAFEDGIDIHAMTASEMF---------GVPVEGMPGE------------ 817

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK+ +R
Sbjct: 818  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKQMAR 875

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM++I     L 
Sbjct: 876  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPA--LA 933

Query: 1062 ELGW----KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQ 1117
            E G     ++LLQVHDE+I E      E A  I+V  M    +    +RV L VDA+ A 
Sbjct: 934  EAGLADRVRMLLQVHDELIFEVEDGDVEKAMPIIVSVMENATSPALEMRVPLRVDARAAT 993

Query: 1118 NW 1119
            NW
Sbjct: 994  NW 995



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 101/250 (40%), Gaps = 61/250 (24%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           D L+      ED SI KV  N  +D  +++ YG++   F  DTM ++ + D+     G +
Sbjct: 466 DALSRLKALLEDESILKVAQNLKYDYLLMKRYGIETKSFD-DTMLISYVLDAG---TGAH 521

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIST 540
            ++ L+                       E F+G   I+ KD+ G         +GK + 
Sbjct: 522 GMDPLS-----------------------EKFLGHTPIAYKDVAG---------SGKSNV 549

Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
              + +++R        Y+A D+  TL+L+  LK +L                +   Y+ 
Sbjct: 550 TFDLVDIERATH-----YAAEDADVTLRLWMVLKPRL------------AATQLTRVYER 592

Query: 601 YWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
             +P   +L +ME  G+ VDR+ LS      R   E A    R     +    +  N+GS
Sbjct: 593 LERPLVPVLARMEARGITVDRQILS------RLSGELAQGAARYEDEIYQLAGERFNIGS 646

Query: 661 DTQLRQLLFG 670
             QL  +LFG
Sbjct: 647 PKQLGDILFG 656


>gi|225869715|ref|YP_002745662.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
 gi|225699119|emb|CAW92303.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
          Length = 886

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 185/347 (53%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +GR+H   L   T+TGRLS
Sbjct: 567  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADGRIHTRYLQDLTQTGRLS 626

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AFK
Sbjct: 627  SVDPNLQNIPIRLEQGRL-IRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFK 685

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D  A++RR AK +NF I 
Sbjct: 686  EGADIHTSTAMRVF-----------------GIEKP-----EDVTANDRRNAKAVNFGIV 723

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +  ++AK  +D ++     +  + E   +E++   +V TL  R R+ 
Sbjct: 724  YGISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDKGYVETLFKRRRQL 783

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + +         K+LLQVHDE++
Sbjct: 784  PDINSRQFNVRSFAERTAINSPIQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIV 843

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P+      KA+V E M        +L V L VD    ++WY AK
Sbjct: 844  LEVPNHELAAVKALVKETMESAV----SLAVPLRVDESAGKSWYEAK 886


>gi|417101705|ref|ZP_11960511.1| DNA-directed DNA polymerase, DNA polymerase I protein [Rhizobium etli
            CNPAF512]
 gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polymerase I protein [Rhizobium etli
            CNPAF512]
          Length = 997

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 158/302 (52%), Gaps = 30/302 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 717  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 776

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 777  LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 815

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK  +R
Sbjct: 816  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 873

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM++I     L 
Sbjct: 874  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPA--LA 931

Query: 1062 ELGW----KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQ 1117
            E G     ++LLQVHDE+I E   E  + A  I+V  M         +RV L VDA+ A 
Sbjct: 932  EAGLAERVRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVDARAAT 991

Query: 1118 NW 1119
            NW
Sbjct: 992  NW 993



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 99/251 (39%), Gaps = 61/251 (24%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED S+ KV  N  +D  +L+ YG++   F  DTM ++ + D+     G 
Sbjct: 463 RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETKSFD-DTMLISYVLDAG---TGA 518

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  KD+ G         +G+ +
Sbjct: 519 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGRAN 546

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L                +   Y+
Sbjct: 547 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 589

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   +L +ME  G+ VDR+ LS      R   E A    R     +    +  N+G
Sbjct: 590 RLERPLLPVLARMEARGITVDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIG 643

Query: 660 SDTQLRQLLFG 670
           S  QL  +LFG
Sbjct: 644 SPKQLGDILFG 654


>gi|12229815|sp|Q9S1G2.1|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I
 gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum]
          Length = 1016

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/302 (38%), Positives = 159/302 (52%), Gaps = 30/302 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 736  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 795

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 796  LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 834

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK  +R
Sbjct: 835  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 892

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM++I     L 
Sbjct: 893  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPA--LV 950

Query: 1062 ELGW----KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQ 1117
            E+G     ++LLQVHDE+I E   +  E A  ++V  M         +RV L VDA+ A 
Sbjct: 951  EVGLADRVRMLLQVHDELIFEVEDQDVEKAMPVIVSVMENATMPALEMRVPLRVDARAAT 1010

Query: 1118 NW 1119
            NW
Sbjct: 1011 NW 1012



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 102/256 (39%), Gaps = 71/256 (27%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED S+ KV  N  +D  +L+ YG++   F  DTM ++ + D+     G 
Sbjct: 482 RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETRSFD-DTMLISYVLDAG---TGA 537

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  KD+ G         +GK +
Sbjct: 538 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 565

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L                +   Y+
Sbjct: 566 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 608

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
              +P   +L +ME  G+ VDR+ LS +     +  AR E E  V    ++         
Sbjct: 609 RLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERF--------- 659

Query: 655 YMNVGSDTQLRQLLFG 670
             N+GS  QL  +LFG
Sbjct: 660 --NIGSPKQLGDILFG 673


>gi|410696876|gb|AFV75944.1| DNA polymerase I [Thermus oshimai JL-2]
          Length = 830

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 184/368 (50%), Gaps = 37/368 (10%)

Query: 757  LDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSN 816
            L   G TE+T  +   A+  ++       REA   +  + E   +  L S +I PL    
Sbjct: 498  LPPIGKTEKTGKRSTSAAVLELL------REAHPIVGRILEYRELMKLKSTYIDPLP-RL 550

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  K GR+H   N   T TGRLS+  PNLQN P       +IR+AFIA  G+ L+  DY 
Sbjct: 551  VHPKTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFIAEEGHLLVALDYS 610

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAHL+  ++++  F+ G D H+ TA  M+                     PP  
Sbjct: 611  QIELRVLAHLSGDENLIRVFREGKDIHTETAAWMF-------------------GVPP-- 649

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
              +    + RR AK +NF + YG +   L+++  +  EEA   ++ ++    +V  W   
Sbjct: 650  --EGVDGAMRRAAKTVNFGVLYGMSAHRLSQELSIPYEEAAAFIERYFQSFPQVRAWIAH 707

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E R   +V TL GR R  P + +  +S R   ER A N PVQG+AAD+   AM+++ 
Sbjct: 708  TLEEGRKKGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF 767

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
               RL+ LG ++LLQVHDE++LE P   AE A  +  E M     G   L V L V+   
Sbjct: 768  P--RLRPLGVRILLQVHDELVLEAPKARAEEAAQLAKETM----EGAYPLSVPLEVEVGM 821

Query: 1116 AQNWYSAK 1123
             ++W SAK
Sbjct: 822  GEDWLSAK 829


>gi|374328706|ref|YP_005078890.1| DNA polymerase I [Pseudovibrio sp. FO-BEG1]
 gi|359341494|gb|AEV34868.1| DNA polymerase I [Pseudovibrio sp. FO-BEG1]
          Length = 980

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 162/309 (52%), Gaps = 24/309 (7%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S ++ + GRVH S ++ +T TGRLS+  PN+QN P    +  KIRQAFIA  G  LI AD
Sbjct: 694  SFINQETGRVHTSFSLASTSTGRLSSSEPNIQNIPIRTSEGRKIRQAFIAEKGKKLISAD 753

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+A+   +  AF  G D H+ TA  M+             +   G D   
Sbjct: 754  YSQIELRVLAHMADIPQLKQAFADGLDIHAMTASEMFG------------VPIEGMD--- 798

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             P++       RR+AK +NF I YG +  GLA    ++  EA   +  ++     +  + 
Sbjct: 799  -PMV-------RRRAKAINFGIIYGISAFGLANQLGIARGEAGDYIKTYFERFPGIKDYM 850

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  KK    + +V T+ GR   +P + +   + R   ERAAIN P+QGSAAD+   AM+ 
Sbjct: 851  EETKKFVHANGYVETIFGRRAHYPDVNTKNPNMRQFYERAAINAPIQGSAADIIRRAMVR 910

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            + +      +  ++LLQVHDE+I E P +  E  K +V+  M K       L V L V+A
Sbjct: 911  MDEVLETANMDAQMLLQVHDELIFELPEDQVEETKKLVIATMEKATEPALQLSVPLKVEA 970

Query: 1114 KCAQNWYSA 1122
            + A NW  A
Sbjct: 971  EAADNWEEA 979



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 105/249 (42%), Gaps = 59/249 (23%)

Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
           P  EDP++ K+  N  +D  VL+ YG++++ F  DTM ++   D+     GG  ++ L+ 
Sbjct: 456 PMLEDPAVLKIAQNMKYDWLVLKRYGVEMAPFD-DTMLLSYALDAGM---GGNGMDELS- 510

Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR 549
            ++ ++     +++    G +      +IS    F +  L K                  
Sbjct: 511 -QRWLNHTPIPFKEVCGSGKS------QIS----FDKVPLDKA----------------- 542

Query: 550 EERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEIL 609
                  +Y+A D+  TL+L+K LK +L              + M   Y+   +P    L
Sbjct: 543 ------TAYAAEDADVTLRLWKILKPRL------------AAEEMTVVYERLERPMVATL 584

Query: 610 VKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
            KME  G+ +DR+ LS +        E A    R  +  H    +  NVGS  QL ++LF
Sbjct: 585 AKMERRGISIDRQMLSLLSG------EFAQGAARLESEIHDVAGEIFNVGSPKQLGEILF 638

Query: 670 G--GKPNSK 676
           G  G P  K
Sbjct: 639 GKMGLPGGK 647


>gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
 gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
          Length = 920

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/341 (35%), Positives = 170/341 (49%), Gaps = 29/341 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
            Q+ R     I  +     +  L+S ++  L    ++ + GR+H S N   T TGRLS+  
Sbjct: 607  QQLRSKSPIIDEILNYRGLKKLLSTYVDALP-KLINPRTGRIHTSFNQTVTATGRLSSSD 665

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQN P  + D  +IR+ FI  PG     ADY Q+ELRI+AHL+  ++M++AF+ G D 
Sbjct: 666  PNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSEDENMIEAFREGFDI 725

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TA  +                WH +     P       +ER+KAK  NF I YG T 
Sbjct: 726  HAATAARI----------------WHKDIGEVTP-------AERKKAKQANFGIIYGITT 762

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA+   +S  EA+  +D ++     V  + E  K+ +R   +  TL  R R  P I S
Sbjct: 763  YGLAQRMDISNGEARDLIDGYFLTFPRVEAYMEQAKETARKQGYAETLFHRRRYLPDINS 822

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPS 1081
               + R   ER AIN P+QGS AD+   AM+ I +  + + +  K++LQVHDE+      
Sbjct: 823  HNATVRGFAERNAINAPIQGSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDELNFSVFP 882

Query: 1082 ESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            E  E  + IVVE M     G   LRV L  DA   +NW  A
Sbjct: 883  EEKEQVERIVVEEM----QGAYKLRVPLVADAGWGKNWLEA 919



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 85/243 (34%), Gaps = 56/243 (23%)

Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEAL 487
           F P +EDP I KV  N  +D  VL +YG++V+G   DTM    L     R    Y  E  
Sbjct: 397 FKPLYEDPEILKVGQNIKYDIEVLRHYGVEVAGPMFDTMIAHYLLQPELRHNMDYMAEVY 456

Query: 488 TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
            G R V  E+       +     ++  M  +S  DI+                       
Sbjct: 457 LGYRTVHIEEL------IGPRGRNQKNMRDLSPTDIY----------------------- 487

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
                     Y+  D+  TL+L   L+ KL E              +   + +   P   
Sbjct: 488 ---------EYACEDADITLRLKNVLEPKLDE------------AGVARLFHDIEMPLVG 526

Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
           +L  ME  G+ +D E L E  +V             + A +        N+ S  Q+  +
Sbjct: 527 VLADMELNGVCLDTEALHETSEVFNKRMTTIEQHIYELAGEQ------FNISSPRQVGDI 580

Query: 668 LFG 670
           LFG
Sbjct: 581 LFG 583


>gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17]
 gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17]
          Length = 920

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/341 (35%), Positives = 170/341 (49%), Gaps = 29/341 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
            Q+ R     I  +     +  L+S ++  L    ++ + GR+H S N   T TGRLS+  
Sbjct: 607  QQLRSKSPIIDEILNYRGLKKLLSTYVDALP-KLINPRTGRIHTSFNQTVTATGRLSSSD 665

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQN P  + D  +IR+ FI  PG     ADY Q+ELRI+AHL+  ++M++AF+ G D 
Sbjct: 666  PNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSEDENMIEAFREGFDI 725

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TA  +                WH +     P       +ER+KAK  NF I YG T 
Sbjct: 726  HAATAARI----------------WHKDIGEVTP-------AERKKAKQANFGIIYGITT 762

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA+   +S  EA+  +D ++     V  + E  K+ +R   +  TL  R R  P I S
Sbjct: 763  YGLAQRMDISNGEARDLIDGYFLTFPRVEAYMEQAKETARKQGYAETLFHRRRYLPDINS 822

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPS 1081
               + R   ER AIN P+QGS AD+   AM+ I +  + + +  K++LQVHDE+      
Sbjct: 823  HNATVRGFAERNAINAPIQGSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDELNFSVFP 882

Query: 1082 ESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            E  E  + IVVE M     G   LRV L  DA   +NW  A
Sbjct: 883  EEKEQVERIVVEEM----QGAYKLRVPLVADAGWGKNWLEA 919



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 87/243 (35%), Gaps = 56/243 (23%)

Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEAL 487
           F P +EDP I KV  N  +D  VL +YG++V+G   DTM    L     R    Y  E  
Sbjct: 397 FKPLYEDPEILKVGQNIKYDIEVLRHYGVEVAGPMFDTMIAHYLLQPELRHNMDYMAEVY 456

Query: 488 TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
            G R V  E+       +     ++  M  +S  DI+                       
Sbjct: 457 LGYRTVHIEEL------IGPRGRNQKNMRDLSPTDIY----------------------- 487

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
                     Y+  D+  TL+L   L+ KL E              +   +++   P   
Sbjct: 488 ---------EYACEDADITLRLKNVLEPKLDE------------AGVARLFRDIEMPLVG 526

Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
           +L  ME  G+ +D E L E  +V      A      + A +        N+ S  Q+  +
Sbjct: 527 VLADMELNGVCLDTEALHETSEVFNKRMTAIEQHIYELAGEQ------FNISSPRQVGDI 580

Query: 668 LFG 670
           LFG
Sbjct: 581 LFG 583


>gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1]
 gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1]
          Length = 968

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/316 (36%), Positives = 169/316 (53%), Gaps = 32/316 (10%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AF+A
Sbjct: 680  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRTAFVA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
               + L+ ADY Q+ELRILAH+AN  ++ +AF  G D H+ TA  ++           V 
Sbjct: 732  PKRHVLLSADYSQIELRILAHIANITALKEAFSRGQDIHAITASQIF----------GVA 781

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
            +E    D              RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 782  IEGMPSDI-------------RRRAKAINFGIIYGISAFGLANQLGLSRQEAGRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R + +V T+ GR   +P IK+ +   R+  ERAAIN P+QGSA
Sbjct: 829  ERFPGIKDYIETTKTFARQNGYVETIFGRRIHYPEIKAASPQVRSFNERAAINAPIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN 1103
            AD+   AM+++      ++L  K+LLQVHDE++ E P E ++   A+V + M        
Sbjct: 889  ADIIRRAMIQMEDALEKEKLSAKMLLQVHDELVFEVPEEESKKTMAVVKKVMENATMPVL 948

Query: 1104 NLRVDLSVDAKCAQNW 1119
            +L V L V    AQNW
Sbjct: 949  SLSVPLEVKVMVAQNW 964



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 128/315 (40%), Gaps = 84/315 (26%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPE------ADFGNGKSCIWVDLLDGG---- 420
           A DTE   +D     P+   +++ FS+   PE       +   G++    DLL GG    
Sbjct: 382 AFDTETTSLD-----PI-QAKLVGFSLALQPEKAAYVPLEHVEGEN----DLLKGGRIVS 431

Query: 421 ---GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
               +  L    P  ED ++ K+  N  +D  V++ YG+ +  F  DTM ++        
Sbjct: 432 QIETQKALTLLKPILEDQAVLKIGQNIKYDWLVMKQYGIVIHCFD-DTMLLS-------- 482

Query: 478 TEGGYSLEA--LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSA 535
               Y+LEA  LT +   +SE    ++               I+ KD+    K       
Sbjct: 483 ----YALEAGTLTHNMNALSERWLGHKP--------------IAYKDLTHNGK------- 517

Query: 536 GKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMF 595
            KI++ A V+  Q         Y+A D+  TL+L++ LK +L+             + M 
Sbjct: 518 -KITSFAEVDLKQAT------LYAAEDADITLRLWQVLKPQLV------------AQGMT 558

Query: 596 DFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKY 655
             Y+   +P  E+L +ME  G+LVDR+ L       R   E A   F      +    + 
Sbjct: 559 RIYERLDRPLIEVLARMEERGILVDRQIL------LRLSGELAQAAFILEEEIYQLSGEK 612

Query: 656 MNVGSDTQLRQLLFG 670
            N+ S  QL  +LFG
Sbjct: 613 FNLASPKQLGDILFG 627


>gi|329956362|ref|ZP_08296959.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
 gi|328524259|gb|EGF51329.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
          Length = 952

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/349 (34%), Positives = 175/349 (50%), Gaps = 33/349 (9%)

Query: 779  FATEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTE 833
            + T +E  E+  +    I  + E   +  L+S +I  L    ++ + GR+H S N   T 
Sbjct: 631  YVTSEEVLESLRSKHAIIGKILEYRGLKKLLSTYIDALP-QLINPRTGRIHTSFNQAVTA 689

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+D
Sbjct: 690  TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMID 749

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +G D H+ TA  +Y    N                       D  A  RRKAK  NF
Sbjct: 750  AFLSGYDIHAATAAKIYKVDIN-----------------------DVTADMRRKAKTANF 786

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++    +V  + +   + +R + +V T+  R 
Sbjct: 787  GIIYGISVFGLAERMNVPRQEAKELIDGYFETYPQVKEYMDRSIQVARENGYVETIFHRK 846

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHD 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  +   L  K++LQVHD
Sbjct: 847  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMSLICQRLQSNNLKAKMILQVHD 906

Query: 1074 EVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            E+    P    E+ + IV+E M + +     + V L  D    +NW  A
Sbjct: 907  ELNFSVPEAEKEIIQKIVIEEMERAY----RMLVPLKADCGWGKNWLEA 951



 Score = 47.4 bits (111), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 80/203 (39%), Gaps = 50/203 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           ++NE  P +E+ +  KV  N  +D  VL+NYG++V G   DTM    +     R    Y 
Sbjct: 424 IVNELRPLYENENSMKVGQNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQPELRHNMDY- 482

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
                     ++E    YQ               I + ++ G R     G   K     P
Sbjct: 483 ----------LAEIYLQYQ--------------TIHIDELIGAR-----GKNQKNMRDLP 513

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            E++ R        Y+  D+  TLKL   L+K+L E S +              + E   
Sbjct: 514 AEDVYR--------YACEDADVTLKLKNVLEKELKEQSAE------------HLFYEIEM 553

Query: 604 PFGEILVKMETEGMLVDREYLSE 626
           P   +LV +E+ G+ +D E L +
Sbjct: 554 PLVPVLVNIESNGVRIDTEALRQ 576


>gi|402308918|ref|ZP_10827920.1| DNA-directed DNA polymerase [Prevotella sp. MSX73]
 gi|400374497|gb|EJP27415.1| DNA-directed DNA polymerase [Prevotella sp. MSX73]
          Length = 920

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/341 (35%), Positives = 170/341 (49%), Gaps = 29/341 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
            Q+ R     I  +     +  L+S ++  L    ++ + GR+H S N   T TGRLS+  
Sbjct: 607  QQLRSKSPIIDEILNYRGLKKLLSTYVDALP-KLINPRTGRIHTSFNQTVTATGRLSSSD 665

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQN P  + D  +IR+ FI  PG     ADY Q+ELRI+AHL+  ++M++AF+ G D 
Sbjct: 666  PNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSEDENMIEAFREGFDI 725

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TA  +                WH +     P       +ER+KAK  NF I YG T 
Sbjct: 726  HAATAARI----------------WHKDIGEVTP-------AERKKAKQANFGIIYGITT 762

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA+   +S  EA+  +D ++     V  + E  K+ +R   +  TL  R R  P I S
Sbjct: 763  YGLAQRMDISNGEARDLIDGYFLTFPRVEAYMEQAKETARKQGYAETLFHRRRYLPDINS 822

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPS 1081
               + R   ER AIN P+QGS AD+   AM+ I +  + + +  K++LQVHDE+      
Sbjct: 823  HNATVRGFAERNAINAPIQGSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDELNFSVFP 882

Query: 1082 ESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            E  E  + IVVE M     G   LRV L  DA   +NW  A
Sbjct: 883  EEKEQVERIVVEEM----QGAYKLRVPLVADAGWGKNWLEA 919



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 87/243 (35%), Gaps = 56/243 (23%)

Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEAL 487
           F P +EDP I KV  N  +D  VL +YG++V+G   DTM    L     R    Y  E  
Sbjct: 397 FKPLYEDPEILKVGQNIKYDIEVLRHYGVEVAGPMFDTMIAHYLLQPELRHNMDYMAEVY 456

Query: 488 TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
            G R V  E+       +     ++  M  +S  DI+                       
Sbjct: 457 LGYRTVHIEEL------IGPRGRNQKNMRDLSPTDIY----------------------- 487

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
                     Y+  D+  TL+L   L+ KL E    L             +++   P   
Sbjct: 488 ---------EYACEDADITLRLKNVLEPKLDEAGVTL------------LFRDIEMPLVG 526

Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
           +L  ME  G+ +D E L E  +V      A      + A +        N+ S  Q+  +
Sbjct: 527 VLADMELNGVCLDTEALHETSEVFNKRMTAIEQHIYELAGEQ------FNISSPRQVGDI 580

Query: 668 LFG 670
           LFG
Sbjct: 581 LFG 583


>gi|406990297|gb|EKE09975.1| hypothetical protein ACD_16C00099G0033 [uncultured bacterium]
          Length = 899

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 163/307 (53%), Gaps = 28/307 (9%)

Query: 814  GSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA 872
               ++GK GRVH S  +  T TGRL++  PNLQN P   ++  KIR AF+A PG  L+  
Sbjct: 617  AQQINGKTGRVHTSYAMTATSTGRLASSEPNLQNIPIRTEEGKKIRSAFLAAPGKKLLSV 676

Query: 873  DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKP 932
            DY Q+ELR+LAH+AN   +  AFK G D H+ TA +++      V   +V  E       
Sbjct: 677  DYSQIELRLLAHMANLPELQKAFKEGKDIHAETASHVF-----GVSLSEVTPEL------ 725

Query: 933  PVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
                        R++AK +NF I YG +P GLAR   +S E A + +  ++     +  +
Sbjct: 726  ------------RQRAKAINFGIVYGISPFGLARQLGISKENAAEYIQTYFKCYPGIQDY 773

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             E  K+E+R   +V TLLGR    P I S   ++R+  ER AIN P+QG  AD+   AM+
Sbjct: 774  VERVKQEAREKGYVTTLLGRRCYIPDIHSRDPNRRSFAERQAINAPLQGGNADIIKKAMI 833

Query: 1053 EISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
            ++ +  + K L   +LLQVHDE+I E      + A+A+++  M        +L V L V+
Sbjct: 834  KLYRLLKEKHLEAHMLLQVHDELIFEIAESDLKKAEALIINVM----QSIASLSVPLVVE 889

Query: 1113 AKCAQNW 1119
            A   + W
Sbjct: 890  ANVGETW 896


>gi|417925421|ref|ZP_12568840.1| DNA-directed DNA polymerase [Finegoldia magna SY403409CC001050417]
 gi|341591047|gb|EGS34255.1| DNA-directed DNA polymerase [Finegoldia magna SY403409CC001050417]
          Length = 875

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 183/349 (52%), Gaps = 34/349 (9%)

Query: 780  ATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINT-ET 834
            +T+QE  EA     + I  +    +I  L + +I  +   ++  K+G++H +      +T
Sbjct: 556  STDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGM--VDLIKKDGKIHTTFQQTIAQT 613

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GR+S+  PNLQN P   ++   IR+AF+   GN L+ ADY Q+ELR+LA LAN + MLDA
Sbjct: 614  GRISSTNPNLQNIPIRTEEGRLIRKAFVPRGGNVLLDADYSQIELRVLADLANDEVMLDA 673

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            FK G D H +TA  ++    + V + Q                       R  AK +NF 
Sbjct: 674  FKHGADIHRKTASEVFKVDFDKVTSLQ-----------------------RSNAKAVNFG 710

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            I YG     L++D  ++ +EAK+ ++ + +  + +  + E      +   +V T++ R R
Sbjct: 711  IVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMNRRR 770

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDE 1074
              P +KS   + R+  ER A+NTP+QGSAAD+   AM++       ++L  KL+LQVHDE
Sbjct: 771  YIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLILQVHDE 830

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +I++ P +  E     V+E M        +L+VD+ +D   A NWY AK
Sbjct: 831  LIVDCPKDEREK----VLEIMKDVMTHAVDLKVDMKIDVNSADNWYDAK 875


>gi|338740726|ref|YP_004677688.1| DNA polymerase I [Hyphomicrobium sp. MC1]
 gi|337761289|emb|CCB67122.1| DNA polymerase I [Hyphomicrobium sp. MC1]
          Length = 993

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 158/305 (51%), Gaps = 25/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GR+H S  + +T TGRL++  PNLQN P   K+  +IR AFIA  G  L+ ADY 
Sbjct: 708  INPETGRIHTSYALASTTTGRLASSEPNLQNIPIRNKEGREIRTAFIAEKGMKLVSADYS 767

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 768  QIELRVLAHVADIPQLKKAFADGLDIHAMTASEMFG----------------------VP 805

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            + KD  A  RR+AK +NF I YG +  GLA    +S EEA   +  ++     +  + +A
Sbjct: 806  V-KDMPAEVRRRAKAINFGIIYGISAFGLANQLSISREEAGDYIKTYFQRFPGIRDYMDA 864

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             KK++    HV T+ GR   +P I +   S R  +ERAAIN P+QGSAAD+   AM+ + 
Sbjct: 865  TKKQAHAHGHVETIFGRRIHYPEINTKNPSMRGFLERAAINAPIQGSAADIIRRAMIRMP 924

Query: 1056 KNARLKEL-GWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                   L   ++LLQVHDE++ E P + A+         M         L V + VDAK
Sbjct: 925  DALVAANLSSARMLLQVHDELVFEVPQDQADALIITARHVMETAAEPAIKLSVPIHVDAK 984

Query: 1115 CAQNW 1119
             A NW
Sbjct: 985  AADNW 989



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 136/340 (40%), Gaps = 97/340 (28%)

Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
           W+   +   LV A DTE +++   +       +++ FS+   P      G++C       
Sbjct: 385 WIAKAQSAGLV-AFDTETSRLSATE------ADLVGFSLSVTP------GEACYVPVGHQ 431

Query: 419 GGGRDLLNE---------------FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHA 463
            GG DL  +                 P  EDPS+ K+  N  +D  VL+ YG++V+ F  
Sbjct: 432 SGGGDLFGDGNRPPQLAVAEAVALMKPLLEDPSVLKIGQNIKYDVLVLKRYGVEVAPFD- 490

Query: 464 DTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDI 523
           DT+ ++   D  R   G + ++ L+ +R +              G+T   F   I     
Sbjct: 491 DTLLLSYALDGGR---GQHGMDVLS-ERHL--------------GHTCLSFSEVIEHAP- 531

Query: 524 FGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWK 583
            G +K  K  +        P+++           Y+A D+  TL+L+ +LK +L      
Sbjct: 532 -GAKKADKSFAG------VPIDK--------ATEYAAEDADITLRLWMALKPRL------ 570

Query: 584 LDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAA 638
                   + M   Y+   +P   ++V ME  G+ VDR+ L+ +     ++  + E+E  
Sbjct: 571 ------AAEHMATVYETLERPLVPVIVAMEHAGIKVDRDILARLSSTFAQRTVQLEEEIY 624

Query: 639 VNRFRKWASKHCPDAKYMNVGSDTQLRQLLF------GGK 672
                K+           N+GS  QL +LLF      GGK
Sbjct: 625 GLAGHKF-----------NLGSPKQLGELLFDRLKLPGGK 653


>gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
 gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
          Length = 980

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 162/309 (52%), Gaps = 24/309 (7%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S ++ + GRVH S ++ +T TGRLS+  PN+QN P    +  KIRQAFIA  G  LI AD
Sbjct: 694  SFINQETGRVHTSFSLASTSTGRLSSSEPNIQNIPIRTSEGRKIRQAFIAEKGKKLISAD 753

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+A+   +  AF  G D H+ TA  M+             +   G D   
Sbjct: 754  YSQIELRVLAHMADIPQLKQAFADGLDIHAMTASEMFG------------VPIEGMD--- 798

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             P++       RR+AK +NF I YG +  GLA    ++  EA   +  ++     +  + 
Sbjct: 799  -PMV-------RRRAKAINFGIIYGISAFGLANQLGIARGEAGDYIKTYFERFPGIKDYM 850

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  KK    + +V T+ GR   +P + +   + R   ERAAIN P+QGSAAD+   AM+ 
Sbjct: 851  EETKKFVHANGYVETIFGRRAHYPDVNTKNPNMRQFYERAAINAPIQGSAADIIRRAMVR 910

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            + +      L  ++LLQVHDE+I E P +  +  K +V+  M K       L V L V+A
Sbjct: 911  MDEVLETANLDAQMLLQVHDELIFELPEDQVDETKKLVIATMEKATEPALQLSVPLKVEA 970

Query: 1114 KCAQNWYSA 1122
            + A NW  A
Sbjct: 971  EAADNWEEA 979



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 105/249 (42%), Gaps = 59/249 (23%)

Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
           P  EDP++ K+  N  +D  VL+ YG++++ F  DTM ++   D+     GG  ++ L+ 
Sbjct: 456 PMLEDPAVLKIAQNMKYDWLVLKRYGVEMAPFD-DTMLLSYALDAGM---GGNGMDELS- 510

Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR 549
            ++ ++     +++    G +      +IS    F +  L K                  
Sbjct: 511 -QRWLNHTPIPFKEVCGSGKS------QIS----FDKVPLDKA----------------- 542

Query: 550 EERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEIL 609
                  +Y+A D+  TL+L+K LK +L              + M   Y+   +P    L
Sbjct: 543 ------TAYAAEDADVTLRLWKILKPRL------------AAEEMTVVYERLERPMVATL 584

Query: 610 VKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
            KME  G+ +DR+ LS +        E A    R  +  H    +  NVGS  QL ++LF
Sbjct: 585 AKMERRGISIDRQMLSLLSG------EFAQGAARLESEIHDVAGEIFNVGSPKQLGEILF 638

Query: 670 G--GKPNSK 676
           G  G P  K
Sbjct: 639 GKMGLPGGK 647


>gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae
            bacterium]
          Length = 894

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 169/308 (54%), Gaps = 28/308 (9%)

Query: 816  NVSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
            ++    GRVH S N     TGRLS+  PNLQN P   +   +IR+AF+A   N L+ ADY
Sbjct: 613  DIFNNTGRVHTSFNQTVAATGRLSSSNPNLQNIPIRTEMGREIRKAFVAEGNNHLLSADY 672

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAHL+  ++++DAF+ G D H+RTA  ++      ++                
Sbjct: 673  SQVELRVLAHLSEDEALVDAFQMGEDIHTRTACEIFGTTPERLD---------------- 716

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                   A  RR AK +NF I YG +  GL++  K+  ++AKK +D ++   ++V  +  
Sbjct: 717  -------AEARRMAKAVNFGIVYGLSAFGLSKQLKIYPKDAKKFIDQYFALYKKVKVYMV 769

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
                +++   +  TL+ R R  P +KS  R  R   ER AIN+PVQGSAAD+   AM+ +
Sbjct: 770  ETVAQAKEVGYTLTLMNRRRYLPDLKSQNRQVRESAERIAINSPVQGSAADLIKLAMIRL 829

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
            ++  R K+L  +++LQVHDE++ E P +  +  +A+V + M +       L+V L VD  
Sbjct: 830  AEQIRTKKLKSRMILQVHDELVFECPEDEEQEMRALVTKEMEEVM----PLKVPLIVDIG 885

Query: 1115 CAQNWYSA 1122
              +NW +A
Sbjct: 886  WGENWNTA 893


>gi|120603488|ref|YP_967888.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
 gi|120563717|gb|ABM29461.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
          Length = 1015

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 178/347 (51%), Gaps = 30/347 (8%)

Query: 781  TEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETG 835
            T Q+A E        +  + +   ++ L S ++ PL    +    GR+H + N + T TG
Sbjct: 693  TSQDALEKLSGRHPVVDLILDFRKLEKLRSTYLEPL--PKLVDDAGRIHSTFNQLATATG 750

Query: 836  RLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAF 895
            RLS+  PNLQN PA      ++R  F A  GN L+ ADY Q+ELR+LAH++   ++L AF
Sbjct: 751  RLSSSNPNLQNIPARGDLGRRMRSCFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAF 810

Query: 896  KAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSI 955
            + G D H RTA  +Y                   D  P    +D    +RR AK +NF +
Sbjct: 811  REGADIHRRTAGLLY-------------------DTAP----EDVTPDQRRNAKTINFGL 847

Query: 956  AYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARR 1015
             YG  P  L ++ +++V EAK+ ++ +++  Q +  + +  +  +R   HV TL GR R 
Sbjct: 848  IYGMGPQKLGQELRITVNEAKQFIERYFSRLQHLRNFYDNVEAAAREQGHVTTLAGRRRL 907

Query: 1016 FPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEV 1075
             P + S     R+   R AINT +QGSAAD+   AML    +  L  L  +L+LQVHDE+
Sbjct: 908  LPEMHSENTQLRSQARRQAINTLIQGSAADIIKLAMLAAHDDPVLHGLKARLILQVHDEL 967

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            +LE P  +A+ A   +   MS+   G   L V L VD    ++W SA
Sbjct: 968  MLEVPEANAQAAGERLALLMSEVRPGGVTLDVPLLVDWGAGKDWGSA 1014


>gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse]
 gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse]
          Length = 968

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/309 (37%), Positives = 164/309 (53%), Gaps = 24/309 (7%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S +  K GR+H + ++  T TGRLS+  PNLQN P    +  KIR AFIA  G+ L+ AD
Sbjct: 682  SYILSKTGRIHTNYSLAITSTGRLSSSEPNLQNIPVRTTEGRKIRTAFIAPKGHMLLSAD 741

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELRILAH+A+  ++ +AF  G D H+ TA  M+           V +E    D   
Sbjct: 742  YSQIELRILAHIADIIALKEAFAQGQDIHAITASQMF----------GVAIEGMNSDI-- 789

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       RR+AK +NF I YG +  GLA    +S +EA   + L++     +  + 
Sbjct: 790  -----------RRRAKAINFGIIYGISAFGLANQLGLSRQEASHYIQLYFERFPGIKDYM 838

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K  +  + +V T+ GR   +P IK+     R+  ERAAIN P+QGSAAD+   AM++
Sbjct: 839  EMTKNFACRNGYVETIFGRRIHYPEIKAANLQVRSFNERAAINAPIQGSAADIIRRAMIQ 898

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            +      ++L  K+LLQVHDE+I E P + +E   A+V + M        +L V L V  
Sbjct: 899  MENALEKEKLSAKMLLQVHDELIFEVPEDESERTMALVKKVMENATMPVLSLSVPLEVKV 958

Query: 1114 KCAQNWYSA 1122
              AQNW  A
Sbjct: 959  MAAQNWEEA 967



 Score = 57.0 bits (136), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 128/317 (40%), Gaps = 73/317 (23%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           R  L    P  ED ++ K+  N  +D  V++ YG+ +  F  DTM ++   D+       
Sbjct: 436 RKALTLLKPILEDQAVLKIGQNIKYDWLVMKQYGIVIRCFD-DTMLLSYALDAG------ 488

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
               ALT +   +SE    ++               I+ KD+    K        KI++ 
Sbjct: 489 ----ALTHNMDALSERWLGHKP--------------IAYKDLTHNGK--------KITSF 522

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
           A V+  Q         Y+A D+  TL+L++ LK +L+             + M   Y+  
Sbjct: 523 AQVDLKQAT------LYAAEDADITLRLWQVLKPQLV------------ARGMTKVYERL 564

Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            +P  E+L KME  G+LVDR+ L       R   E A   F      +    +  N+ S 
Sbjct: 565 DRPLVEVLAKMEERGILVDRQIL------LRLSGELAQAAFILEEEIYQLAGEKFNLASP 618

Query: 662 TQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSK---FRNIT-L 712
            QL  +LFG     G   +K    S   + +      E + AEG   P K   +R +  L
Sbjct: 619 KQLGGILFGKMSLPGGTRTKSGQWSTSAQTL------EELAAEGHILPRKIIDWRQLAKL 672

Query: 713 RSIGVD-LPTEMYTATG 728
           +S   D LP+ + + TG
Sbjct: 673 KSTYADALPSYILSKTG 689


>gi|46578911|ref|YP_009719.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|387152325|ref|YP_005701261.1| DNA polymerase I [Desulfovibrio vulgaris RCH1]
 gi|46448323|gb|AAS94978.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232769|gb|ADP85623.1| DNA polymerase I [Desulfovibrio vulgaris RCH1]
          Length = 1015

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/323 (35%), Positives = 170/323 (52%), Gaps = 26/323 (8%)

Query: 801  IDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQ 859
            ++ L S ++ PL    +    GR+H + N + T TGRLS+  PNLQN PA      ++R 
Sbjct: 717  LEKLRSTYLEPL--PKLVDAAGRIHSTFNQLATATGRLSSSNPNLQNIPARGDLGRRMRS 774

Query: 860  AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
             F A  GN L+ ADY Q+ELR+LAH++   ++L AF+ G D H RTA  +Y         
Sbjct: 775  CFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLY--------- 825

Query: 920  GQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTV 979
                      D  P    +D    +RR AK +NF + YG  P  L ++ +++V EAK+ +
Sbjct: 826  ----------DTAP----EDVTPDQRRNAKTINFGLIYGMGPQKLGQELRITVNEAKQFI 871

Query: 980  DLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPV 1039
            + +++  Q +  + +  +  +R   HV TL GR R  P + S     R+   R AINT +
Sbjct: 872  ERYFSRLQHLRNFYDNVEAAAREQGHVTTLAGRRRLLPEMHSENTQLRSQARRQAINTLI 931

Query: 1040 QGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPF 1099
            QGSAAD+   AML    +  L  L  +L+LQVHDE++LE P  +A+ A   +   MS+  
Sbjct: 932  QGSAADIIKLAMLAAHDDPVLHGLKARLILQVHDELMLEVPEANAQAAGERLALLMSEVR 991

Query: 1100 NGKNNLRVDLSVDAKCAQNWYSA 1122
             G   L V L VD    ++W SA
Sbjct: 992  PGGVTLDVPLLVDWGAGKDWGSA 1014


>gi|323703153|ref|ZP_08114807.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
 gi|323531930|gb|EGB21815.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
          Length = 882

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/311 (37%), Positives = 166/311 (53%), Gaps = 33/311 (10%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVP---GNSLIVA 872
            V  + GR+H + +   T TGRLS+  PNLQN P   +   +IR+ F  VP   GN ++ A
Sbjct: 599  VDPQTGRLHSTFHQTVTATGRLSSAEPNLQNIPIRLESGRRIRKVF--VPRQKGNLILTA 656

Query: 873  DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKP 932
            DY Q+ELR+LAH++   S L+AF+ G D H+RTA  ++                      
Sbjct: 657  DYSQIELRVLAHMSQDPSFLEAFRQGQDIHTRTAAEVFG--------------------- 695

Query: 933  PVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
             VP+ ++     R +AK +NF I YG +  GLARD KVS  EAK  +D ++     V  +
Sbjct: 696  -VPM-EEVTPDMRSRAKAVNFGIVYGISDFGLARDLKVSRREAKSYIDNYFARCPGVKDY 753

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             +   KE++   +V TLL R R  P + S   + R+  ERAA+NTP+QGSAAD+   AM+
Sbjct: 754  IDRVIKEAKHTGYVTTLLNRRRYLPDLFSPNYNARSFGERAAMNTPIQGSAADIIKLAMV 813

Query: 1053 EISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
             +++  R + L  KL+LQVHDE+I + P         +V +CM         L V L VD
Sbjct: 814  RVARELRERNLQAKLVLQVHDELIFDVPESEVNELVDLVRDCMENAL----PLDVPLVVD 869

Query: 1113 AKCAQNWYSAK 1123
             K   NWY  K
Sbjct: 870  VKLGPNWYEVK 880


>gi|82395938|gb|ABB72056.1| thermostable DNA polymerase I [Geobacillus sp. MKK-2005]
          Length = 876

 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/311 (38%), Positives = 175/311 (56%), Gaps = 33/311 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY
Sbjct: 595  VHPDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADY 654

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 655  SQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIF-HVSE------------------- 694

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 695  ---EEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKRYME 751

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 752  TIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDL 811

Query: 1055 SKNARLKE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
            +  ARLKE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD
Sbjct: 812  A--ARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAV----ALRVPLKVD 865

Query: 1113 AKCAQNWYSAK 1123
                  WY AK
Sbjct: 866  YHYGPTWYDAK 876


>gi|408421334|ref|YP_006762748.1| DNA polymerase I PolA [Desulfobacula toluolica Tol2]
 gi|405108547|emb|CCK82044.1| PolA: DNA polymerase I [Desulfobacula toluolica Tol2]
          Length = 911

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/307 (36%), Positives = 166/307 (54%), Gaps = 28/307 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GR+H S N   T TGRLS+  PNLQN P  +K+  +IR+AFI   G++LI ADY 
Sbjct: 631  INKETGRIHTSFNQTITVTGRLSSSHPNLQNIPIRKKEGKEIRKAFIPKKGHTLISADYS 690

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRILAH A    +++AF  G D H+RTA+ ++          QVL E+         
Sbjct: 691  QIELRILAHYAEDDILIEAFNEGEDIHTRTALEVF----------QVLPEF--------- 731

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                  A  R +AK +NF I YG +   L+ +  +S + AK  +D ++     V  + + 
Sbjct: 732  ----VTADLRSQAKAINFGIVYGMSGFRLSNELSISRKMAKAYIDNYFKRYAGVKKFIDT 787

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+R    V TL GR RR   I S   + RN  +RAAINTP+QGSAAD+   AM++++
Sbjct: 788  TIEETRKTGEVSTLFGRKRRLDDINSSNANVRNFAQRAAINTPIQGSAADLIKMAMIKMA 847

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
               +   +  K+LL VHDE+I E P E  E    +    M +     + L+V L+V+   
Sbjct: 848  DALKANNMASKMLLSVHDEIIFECPLEEKEQLIDLAKTVMEQV----HPLKVPLTVNFGI 903

Query: 1116 AQNWYSA 1122
             +NW  A
Sbjct: 904  GENWAQA 910



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 56/247 (22%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           D+L  F P  E+P IKKV  N  +D  VL  +G+ + G   DTM  + L + + R   G+
Sbjct: 383 DILRIFKPILENPDIKKVGQNIKYDYIVLSRFGITLQGIAFDTMIASYLLNPATR---GH 439

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
           SL+ +  +  +      +Y+    KG    GF      +D+                   
Sbjct: 440 SLDRIAMN--LFGYKTISYEDVTGKGKNQIGF------QDV------------------- 472

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
           P+ +         ++Y++ D+  T   Y+  KK+            +  +++ D  ++  
Sbjct: 473 PIAQ--------AVNYASEDADITFMAYQQFKKQ------------IQDQNLSDLMEKIE 512

Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
            P   +L  ME EG+ VD + L  + +    E ++        A +        N+ S  
Sbjct: 513 IPLITVLANMEMEGIKVDEDALQHLSQTFDLELKSLEKEIYALAGEE------FNINSSQ 566

Query: 663 QLRQLLF 669
           QL  +LF
Sbjct: 567 QLGVILF 573


>gi|445382615|ref|ZP_21427301.1| DNA polymerase I [Streptococcus thermophilus MTCC 5460]
 gi|445395408|ref|ZP_21429034.1| DNA polymerase I [Streptococcus thermophilus MTCC 5461]
 gi|444748485|gb|ELW73451.1| DNA polymerase I [Streptococcus thermophilus MTCC 5461]
 gi|444748653|gb|ELW73612.1| DNA polymerase I [Streptococcus thermophilus MTCC 5460]
          Length = 879

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 186/337 (55%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  K ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDKHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQVHDE++LE P++    
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQVHDEIVLEVPNDELVA 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             KA+V E M         L V L  D    + WY AK
Sbjct: 847  MKALVKETMEAAV----ELAVPLIADENDGRTWYEAK 879


>gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
 gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
          Length = 976

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/299 (38%), Positives = 156/299 (52%), Gaps = 26/299 (8%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN L+ ADY Q+ELR+
Sbjct: 698  RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLVSADYSQIELRV 757

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+                       VP+  +  
Sbjct: 758  LAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VPV--EGM 793

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + EA K  +
Sbjct: 794  PSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFA 853

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P I++     R   ERAAIN P+QGSAAD+   AM+ +      
Sbjct: 854  RENGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGSAADIIRRAMIRMEDALAE 913

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+ A NW
Sbjct: 914  QNLAARMLLQVHDELIFEVPDNEVEKTIPVVRHIMENAAMPAVSLAVPLHVDARAAHNW 972



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 125/319 (39%), Gaps = 88/319 (27%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGP--------EADFGNGKSCIWVDLLDGG 420
           V A DTE   +D  Q       E++ FS+   P        +   G G      DLL GG
Sbjct: 388 VLAFDTETTSLDPMQ------AELVGFSLALAPGRAAYIPLQHKSGAG------DLLGGG 435

Query: 421 ---GRDLLNE----FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
              G+  L+E         ED S+ K+  N  +D  V+  +G+    F  DTM ++ + D
Sbjct: 436 MVEGQIPLDEALAALKIVLEDASVLKIAQNMKYDWLVMRRHGINTVSFD-DTMLISYVLD 494

Query: 474 SSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKK 531
           +     G + ++ L+                       E ++G   I  KD+ G      
Sbjct: 495 AG---TGSHGMDPLS-----------------------ERWLGHTPIPYKDVAG------ 522

Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG 591
              +GK +    + +L R       +Y+A D+  TL+L++ LK +L              
Sbjct: 523 ---SGKSAVSFDMVDLDRA-----TAYAAEDADVTLRLWQVLKPRL------------AA 562

Query: 592 KSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCP 651
           + +   Y+   +P  ++L  ME  G+ VDR+ LS +         A  +   + A +   
Sbjct: 563 EGLMSVYERLERPLVDVLACMEERGIAVDRQVLSRLSGDLAQAAAAYEDEIYELAGER-- 620

Query: 652 DAKYMNVGSDTQLRQLLFG 670
                N+GS  QL  +LFG
Sbjct: 621 ----FNIGSPKQLGDILFG 635


>gi|333923229|ref|YP_004496809.1| DNA polymerase I [Desulfotomaculum carboxydivorans CO-1-SRB]
 gi|333748790|gb|AEF93897.1| DNA polymerase I [Desulfotomaculum carboxydivorans CO-1-SRB]
          Length = 882

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/311 (37%), Positives = 166/311 (53%), Gaps = 33/311 (10%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVP---GNSLIVA 872
            V  + GR+H + +   T TGRLS+  PNLQN P   +   +IR+ F  VP   GN ++ A
Sbjct: 599  VDPQTGRLHSTFHQTVTATGRLSSAEPNLQNIPIRLESGRRIRKVF--VPRQKGNLILTA 656

Query: 873  DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKP 932
            DY Q+ELR+LAH++   S L+AF+ G D H+RTA  ++                      
Sbjct: 657  DYSQIELRVLAHMSQDPSFLEAFRQGQDIHTRTAAEVFG--------------------- 695

Query: 933  PVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
             VP+ ++     R +AK +NF I YG +  GLARD KVS  EAK  +D ++     V  +
Sbjct: 696  -VPM-EEVTPDMRSRAKAVNFGIVYGISDFGLARDLKVSRREAKSYIDNYFARCPGVKDY 753

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             +   KE++   +V TLL R R  P + S   + R+  ERAA+NTP+QGSAAD+   AM+
Sbjct: 754  IDRVIKEAKHTGYVTTLLNRRRYLPDLFSPNYNARSFGERAAMNTPIQGSAADIIKLAMV 813

Query: 1053 EISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
             +++  R + L  KL+LQVHDE+I + P         +V +CM         L V L VD
Sbjct: 814  RVARELRERNLQAKLVLQVHDELIFDVPESEVNELVDLVRDCMENAL----PLDVPLVVD 869

Query: 1113 AKCAQNWYSAK 1123
             K   NWY  K
Sbjct: 870  VKLGPNWYEVK 880


>gi|424879511|ref|ZP_18303143.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WU95]
 gi|392515874|gb|EIW40606.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WU95]
          Length = 1016

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 158/302 (52%), Gaps = 30/302 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 736  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 795

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 796  LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 834

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK  +R
Sbjct: 835  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 892

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM++I     L 
Sbjct: 893  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPA--LV 950

Query: 1062 ELGW----KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQ 1117
            E+G     ++LLQVHDE+I E   E  E A   +V  M         +RV L VDA+ A 
Sbjct: 951  EVGLADRVRMLLQVHDELIFEVGDEDVEKAMPTIVSVMENATMPALEMRVPLRVDARAAT 1010

Query: 1118 NW 1119
            NW
Sbjct: 1011 NW 1012



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 71/255 (27%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           D L       ED S+ KV  N  +D  +++ YG++   F  DTM ++ + D+     G +
Sbjct: 483 DALPRLKALLEDESVLKVAQNLKYDYLLMKRYGIETRSFD-DTMLISYVLDAG---TGAH 538

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIST 540
            ++ L+                       E F+G   I  KD+ G         +GK + 
Sbjct: 539 GMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKANV 566

Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
              + ++ R        Y+A D+  TL+L+  LK +L                +   Y+ 
Sbjct: 567 TFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYER 609

Query: 601 YWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAKY 655
             +P   +L +ME  G+ VDR+ LS +     +  AR E E  V    ++          
Sbjct: 610 LERPLLPVLARMEARGITVDRQILSRLSGELAQSAARLEDEIYVLAGERF---------- 659

Query: 656 MNVGSDTQLRQLLFG 670
            N+GS  QL  +LFG
Sbjct: 660 -NIGSPKQLGDILFG 673


>gi|209360700|gb|ACI43002.1| DNA polymerase I [Geobacillus bogazici]
          Length = 878

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/311 (37%), Positives = 175/311 (56%), Gaps = 33/311 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  ADY
Sbjct: 597  VHHDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADY 656

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 657  SQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIF-HVSE------------------- 696

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 697  ---EEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKRYME 753

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 754  NIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL 813

Query: 1055 SKNARLKE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
            +  ARLKE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD
Sbjct: 814  A--ARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----ELRVPLKVD 867

Query: 1113 AKCAQNWYSAK 1123
                  WY  K
Sbjct: 868  YHYGPTWYDPK 878


>gi|418299118|ref|ZP_12910953.1| DNA polymerase I [Agrobacterium tumefaciens CCNWGS0286]
 gi|355535412|gb|EHH04700.1| DNA polymerase I [Agrobacterium tumefaciens CCNWGS0286]
          Length = 999

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 164/301 (54%), Gaps = 30/301 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  + +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ ADY Q+ELR+
Sbjct: 721  RVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRV 780

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   + +AF+ G D H+ TA  M+                       VP+  +  
Sbjct: 781  LAHVADIPQLRNAFENGIDIHAMTASEMFG----------------------VPV--EGM 816

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    ++  EA   +  ++     +  + EA K  +
Sbjct: 817  PSEVRRRAKAINFGIIYGISAFGLANQLSIARSEAGDYIKKYFERFPGIRDYMEATKAFA 876

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P I+S   S +   ERAAIN P+QGSAAD+   AM+ I      
Sbjct: 877  RENGYVETIFGRRAHYPEIRSSNPSVKAFNERAAINAPIQGSAADIIRRAMVRIEPALEA 936

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKA--IVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            ++L  ++LLQVHDE+I E   E AE+ K   +VV  M        +++V L VDA+ A N
Sbjct: 937  EKLSARMLLQVHDELIFE--VEEAEIEKTLPVVVSVMENAAMPAISMKVPLKVDARAADN 994

Query: 1119 W 1119
            W
Sbjct: 995  W 995



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 129/338 (38%), Gaps = 114/338 (33%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL---------DG 419
           V A DTE   +D  Q       E++ FS+     A   NGK     D+           G
Sbjct: 399 VVAFDTETTSLDPMQ------AELVGFSL-----AIADNGKDATGTDIRAAYVPLTHKTG 447

Query: 420 GGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
            G DL ++         PF           ED ++ KV  N  +D  +++ +G+ +  F 
Sbjct: 448 SGGDLFSDGIRMAEGQVPFAEALARLKDLLEDEAVLKVAQNLKYDYLLMKRHGVVMQSFD 507

Query: 463 ADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISM 520
            DTM ++ + ++ + T G  SL                           E ++G   I+ 
Sbjct: 508 -DTMLISYVLEAGKATHGMDSLS--------------------------ERWLGHTPIAY 540

Query: 521 KDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEM 580
           KD+ G         +GK S      ++ +       +Y+A D+  TL+L+ +LK +L   
Sbjct: 541 KDVAG---------SGKSSVTFDFVDIDKA-----TAYAAEDADVTLRLWMALKPRL--- 583

Query: 581 SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQ 635
                      + +   Y+   +P   +L  ME  G+ VDR+ LS +     +K A  E+
Sbjct: 584 ---------AAERLTSVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAASFEE 634

Query: 636 EA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
           E    A  RF              N+GS  QL  +LFG
Sbjct: 635 EIYELAGERF--------------NIGSPKQLGDILFG 658


>gi|225867770|ref|YP_002743718.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
 gi|225701046|emb|CAW97839.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
          Length = 886

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 184/347 (53%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +GR+H   L   T+TGRLS
Sbjct: 567  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADGRIHTRYLQDLTQTGRLS 626

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AFK
Sbjct: 627  SVDPNLQNIPIRLEQGRL-IRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFK 685

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D  A++RR AK +NF I 
Sbjct: 686  EGADIHTSTAMRVF-----------------GIEKP-----EDVTANDRRNAKAVNFGIV 723

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +  ++AK  +D ++     +  + E   +E++   +V TL  R R+ 
Sbjct: 724  YGISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKDYMERVVREAKDKGYVETLFKRRRQL 783

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + +         K+LLQVHDE++
Sbjct: 784  PDINSRQFNVRSFAERTAINSPIQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIV 843

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P+      K +V E M        NL V L VD    ++WY AK
Sbjct: 844  LEVPNHELAAVKELVKETMESAV----NLAVPLRVDESAGKSWYEAK 886


>gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737]
          Length = 830

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 184/368 (50%), Gaps = 37/368 (10%)

Query: 757  LDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSN 816
            L   G TE+T  +   A+  ++       REA   +  + E   +  L S +I PL    
Sbjct: 498  LPPIGKTEKTGKRSTSAAVLELL------REAHPIVGRILEYRELMKLKSTYIDPLP-RL 550

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  K GR+H   N   T TGRLS+  PNLQN P       +IR+AFIA  G+ L+  DY 
Sbjct: 551  VHPKTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFIAEEGHLLVALDYS 610

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAHL+  ++++  F+ G D H+ TA  M+                     PP  
Sbjct: 611  QIELRVLAHLSGDENLIRVFREGKDIHTETAAWMF-------------------GVPP-- 649

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
              +    + RR AK +NF + YG +   L+++  +  EEA   ++ ++    +V  W   
Sbjct: 650  --EGVDGAMRRAAKTVNFGVLYGMSAHRLSQELSIPYEEAAAFIERYFQSFPKVRAWIAK 707

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E R   +V TL GR R  P + +  +S R   ER A N PVQG+AAD+   AM+++ 
Sbjct: 708  TLEEGRKKGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF 767

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
               RL+ LG ++LLQVHDE++LE P   AE A  +  E M     G   L V L V+   
Sbjct: 768  P--RLRPLGVRILLQVHDELVLEAPKARAEEAAQLAKETM----EGVYPLSVPLEVEVGM 821

Query: 1116 AQNWYSAK 1123
             ++W SAK
Sbjct: 822  GEDWLSAK 829


>gi|303235252|ref|ZP_07321870.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
 gi|302493566|gb|EFL53354.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
          Length = 875

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/349 (32%), Positives = 183/349 (52%), Gaps = 34/349 (9%)

Query: 780  ATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINT-ET 834
            +T+QE  EA     + I  +    +I  L + +I  +   ++  K+G++H +      +T
Sbjct: 556  STDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGM--VDLIKKDGKIHTTFQQTIAQT 613

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GR+S+  PNLQN P   ++   IR+AF+   GN L+ ADY Q+ELR+LA LAN + M+DA
Sbjct: 614  GRISSTNPNLQNIPIRTEEGRLIRKAFVPSGGNVLLDADYSQIELRVLADLANDEVMIDA 673

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            FK G D H +TA  ++    + V + Q                       R  AK +NF 
Sbjct: 674  FKHGADIHRKTASEVFKVDFDKVTSLQ-----------------------RSNAKAVNFG 710

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            I YG     L++D  ++ +EAK+ ++ + +  + +  + E      +   +V T++ R R
Sbjct: 711  IVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMNRRR 770

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDE 1074
              P +KS   + R+  ER A+NTP+QGSAAD+   AM++       ++L  KL+LQVHDE
Sbjct: 771  YIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLILQVHDE 830

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +I++ P +  E     V+E M        +L+VD+ +D   A NWY AK
Sbjct: 831  LIVDCPKDEREK----VLEIMKDVMTHAVDLKVDMKIDVNSADNWYDAK 875


>gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium extorquens CM4]
 gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium extorquens CM4]
          Length = 1047

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 172/342 (50%), Gaps = 25/342 (7%)

Query: 782  EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSAR 840
            E+ A+   D    +     +  L S +   LQ     G N RVH S  +  T TGRLS+ 
Sbjct: 729  EELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTN-RVHTSFALAATTTGRLSSS 787

Query: 841  RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
             PNLQN P   ++  +IR+AF+A  G  LI ADY Q+ELR+LAH+A+   + +AF+ G D
Sbjct: 788  DPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGID 847

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H+ TA  M+         G  L +  G+               RR+AK +NF I YG +
Sbjct: 848  IHAATASAMF---------GVALDQMTGD--------------LRRRAKTINFGIIYGIS 884

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GLA    +  EEA   +  ++     +  + +  K+  R   +V TL GR   +P I+
Sbjct: 885  AFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIR 944

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGP 1080
            S   S+R  +ER AIN P+QG+AAD+   AM  +      K+L  ++LLQVHDE++ E P
Sbjct: 945  SNNPSERASVERQAINAPIQGTAADIIRRAMTRMEDALEAKKLTARMLLQVHDELVFEVP 1004

Query: 1081 SESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
             +  E    ++   M +       LRV L V+A+ A NW  A
Sbjct: 1005 DDEVEATIPVIAGVMEEAPAPALTLRVPLVVEARAAGNWEEA 1046


>gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1]
 gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1]
          Length = 1047

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 172/342 (50%), Gaps = 25/342 (7%)

Query: 782  EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSAR 840
            E+ A+   D    +     +  L S +   LQ     G N RVH S  +  T TGRLS+ 
Sbjct: 729  EELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTN-RVHTSFALAATTTGRLSSS 787

Query: 841  RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
             PNLQN P   ++  +IR+AF+A  G  LI ADY Q+ELR+LAH+A+   + +AF+ G D
Sbjct: 788  DPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGID 847

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H+ TA  M+         G  L +  G+               RR+AK +NF I YG +
Sbjct: 848  IHAATASAMF---------GVALDQMTGD--------------LRRRAKTINFGIIYGIS 884

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GLA    +  EEA   +  ++     +  + +  K+  R   +V TL GR   +P I+
Sbjct: 885  AFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIR 944

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGP 1080
            S   S+R  +ER AIN P+QG+AAD+   AM  +      K+L  ++LLQVHDE++ E P
Sbjct: 945  SNNPSERASVERQAINAPIQGTAADIIRRAMTRMEDALEAKKLTARMLLQVHDELVFEVP 1004

Query: 1081 SESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
             +  E    ++   M +       LRV L V+A+ A NW  A
Sbjct: 1005 DDEVEATIPVIAGVMEEAPAPALTLRVPLVVEARAAGNWEEA 1046


>gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614]
 gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614]
          Length = 996

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/307 (36%), Positives = 162/307 (52%), Gaps = 24/307 (7%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH S  +  T TGRLS+  PNLQN P   ++  KIR+AFIA  G+ LI ADY 
Sbjct: 712  INPETGRVHTSYALAATTTGRLSSSEPNLQNIPVRTEEGRKIRKAFIAEKGHKLISADYS 771

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+      +E         G D    P
Sbjct: 772  QIELRVLAHMADIPQLKKAFDDGLDIHAMTASEMF---GTPIE---------GMD----P 815

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            ++       RR+AK +NF I YG +  GLA    +S  EA   +  ++     +  + EA
Sbjct: 816  MV-------RRRAKAINFGIIYGISAFGLANQLGISRGEAGDYIKTYFERFPGIKDYMEA 868

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             KK+   + +V T+ GR   +P + +   + R   ERAAIN P+QGSAAD+   AM+ + 
Sbjct: 869  IKKQVHANGYVTTIFGRKAHYPEVNTKNPNMRAFYERAAINAPIQGSAADILRRAMVRME 928

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
                  +L  ++LLQVHDE+I E P    E    ++ + M    +    L V L VDA+ 
Sbjct: 929  NRLEGSKLDAQMLLQVHDELIFEVPDAQVETTIPVIKDVMENACDPALKLSVPLQVDARA 988

Query: 1116 AQNWYSA 1122
            A NW  A
Sbjct: 989  ANNWDEA 995



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 105/257 (40%), Gaps = 59/257 (22%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           +D L+   P  ED S+ K+  N  +D  V+  YG+ ++ F  DTM ++   D+ +   GG
Sbjct: 464 KDALDVLKPMLEDRSVLKIAQNLKYDWLVMTRYGIDITPFD-DTMLLSYTVDAGK---GG 519

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
             ++ L+ +R +   D K                  I  K+I G  K          S I
Sbjct: 520 NGMDELS-ERWL---DHK-----------------PIPFKEICGSGK----------SMI 548

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
                  +   +   +Y+A D+  TL+L+  LK +L              + M   Y+  
Sbjct: 549 T----FDKVAIDKATAYAAEDADVTLRLWLILKPRLAS------------ERMATVYETL 592

Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            +P   +L +ME  G+ VDR+ LS      R   E A     K +  +    +  N+GS 
Sbjct: 593 ERPMVPVLARMEKRGISVDRQMLS------RLSGEFAQGMAGKESEIYELAGENFNIGSP 646

Query: 662 TQLRQLLFG--GKPNSK 676
            QL  +LFG  G P  K
Sbjct: 647 KQLGDILFGKMGLPGGK 663


>gi|212702438|ref|ZP_03310566.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098]
 gi|212674099|gb|EEB34582.1| DNA-directed DNA polymerase [Desulfovibrio piger ATCC 29098]
          Length = 919

 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/332 (35%), Positives = 176/332 (53%), Gaps = 26/332 (7%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPAL 850
            + ++ +   ++ + S ++ PL    +    GR+H + N   T TGRLS+  PNLQN P  
Sbjct: 612  VDSILQYRKLEKMRSTYLDPL--PRLVDPQGRIHTTFNQKATATGRLSSSNPNLQNIPVR 669

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
                 ++R  FIA PG  L+ ADY Q+ELR+LAH++   ++L+AF+ G D H+RTA  +Y
Sbjct: 670  GPLGKRMRSCFIAGPGRLLVSADYSQVELRVLAHVSQDPALLEAFRNGEDIHARTAALVY 729

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                               D PP  +  D    +RR AK +NF + YG     LA++ K+
Sbjct: 730  -------------------DLPPDQVSPD----QRRNAKTINFGLIYGMGAQKLAQELKI 766

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
            S  +AK  +  ++   Q +  + E  +  +R    V TL GR R  P I S +       
Sbjct: 767  STTQAKDFIARYFERLQGLKEFYEGVEASARKHGFVTTLGGRRRLLPDINSASGQAAALA 826

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAI 1090
             R AINT +QGSAAD+   AML ++++ RL+EL  +LLLQVHDE++LE P+++AE A A+
Sbjct: 827  RRQAINTVIQGSAADIIKLAMLAVARDERLRELDARLLLQVHDELLLEVPADAAEEAGAL 886

Query: 1091 VVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            V   M         L V L VD     +W +A
Sbjct: 887  VARLMQDVCPAGKELSVPLLVDWGTGHDWGAA 918


>gi|414563125|ref|YP_006042086.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus ATCC 35246]
 gi|338846190|gb|AEJ24402.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus ATCC 35246]
          Length = 886

 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 184/347 (53%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +GR+H   L   T+TGRLS
Sbjct: 567  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADGRIHTRYLQDLTQTGRLS 626

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AFK
Sbjct: 627  SVDPNLQNIPIRLEQGRL-IRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFK 685

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D  A++RR AK +NF I 
Sbjct: 686  EGADIHTSTAMRVF-----------------GIEKP-----EDVTANDRRNAKAVNFGIV 723

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +  ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 724  YGISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDKGYVETLFKRRREL 783

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + +         K+LLQVHDE++
Sbjct: 784  PDINSRQFNVRSFAERTAINSPIQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIV 843

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P+      KA+V E M        +L V L VD    ++WY AK
Sbjct: 844  LEVPNHELAAVKALVKETMESAV----SLAVPLRVDESAGKSWYEAK 886


>gi|163851894|ref|YP_001639937.1| DNA polymerase I [Methylobacterium extorquens PA1]
 gi|163663499|gb|ABY30866.1| DNA polymerase I [Methylobacterium extorquens PA1]
          Length = 1047

 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 172/342 (50%), Gaps = 25/342 (7%)

Query: 782  EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSAR 840
            E+ A+   D    +     +  L S +   LQ     G N RVH S  +  T TGRLS+ 
Sbjct: 729  EELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTN-RVHTSFALAATTTGRLSSS 787

Query: 841  RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
             PNLQN P   ++  +IR+AF+A  G  LI ADY Q+ELR+LAH+A+   + +AF+ G D
Sbjct: 788  DPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGID 847

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H+ TA  M+         G  L +  G+               RR+AK +NF I YG +
Sbjct: 848  IHAATASAMF---------GVALDQMTGD--------------LRRRAKTINFGIIYGIS 884

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GLA    +  EEA   +  ++     +  + +  K+  R   +V TL GR   +P I+
Sbjct: 885  AFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIR 944

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGP 1080
            S   S+R  +ER AIN P+QG+AAD+   AM  +      K+L  ++LLQVHDE++ E P
Sbjct: 945  SNNPSERASVERQAINAPIQGTAADIIRRAMTRMEDALEAKKLTARMLLQVHDELVFEVP 1004

Query: 1081 SESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
             +  E    ++   M +       LRV L V+A+ A NW  A
Sbjct: 1005 DDEVEATIPVIAGVMEEAPAPALTLRVPLVVEARAAGNWEEA 1046


>gi|418058623|ref|ZP_12696593.1| DNA polymerase I [Methylobacterium extorquens DSM 13060]
 gi|373567862|gb|EHP93821.1| DNA polymerase I [Methylobacterium extorquens DSM 13060]
          Length = 1047

 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 172/342 (50%), Gaps = 25/342 (7%)

Query: 782  EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSAR 840
            E+ A+   D    +     +  L S +   LQ     G N RVH S  +  T TGRLS+ 
Sbjct: 729  EELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTN-RVHTSFALAATTTGRLSSS 787

Query: 841  RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
             PNLQN P   ++  +IR+AF+A  G  LI ADY Q+ELR+LAH+A+   + +AF+ G D
Sbjct: 788  DPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGID 847

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H+ TA  M+         G  L +  G+               RR+AK +NF I YG +
Sbjct: 848  IHAATASAMF---------GVALDQMTGD--------------LRRRAKTINFGIIYGIS 884

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GLA    +  EEA   +  ++     +  + +  K+  R   +V TL GR   +P I+
Sbjct: 885  AFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIR 944

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGP 1080
            S   S+R  +ER AIN P+QG+AAD+   AM  +      K+L  ++LLQVHDE++ E P
Sbjct: 945  SNNPSERASVERQAINAPIQGTAADIIRRAMTRMEDALEAKKLTARMLLQVHDELVFEVP 1004

Query: 1081 SESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
             +  E    ++   M +       LRV L V+A+ A NW  A
Sbjct: 1005 DDEVEATIPVIAGVMEEAPAPALTLRVPLVVEARAAGNWEEA 1046


>gi|254561612|ref|YP_003068707.1| DNA polymerase I [Methylobacterium extorquens DM4]
 gi|254268890|emb|CAX24851.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1047

 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 171/342 (50%), Gaps = 25/342 (7%)

Query: 782  EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSAR 840
            E+ A+   D    +     +  L S +   LQ     G N RVH S  +  T TGRLS+ 
Sbjct: 729  EELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTN-RVHTSFALAATTTGRLSSS 787

Query: 841  RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
             PNLQN P   ++  +IR+AF+A  G  LI ADY Q+ELR+LAH+A+   + +AF+ G D
Sbjct: 788  DPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGID 847

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H+ TA  M+         G  L +  G+               RR+AK +NF I YG +
Sbjct: 848  IHAATASAMF---------GVALDQMTGD--------------LRRRAKTINFGIIYGIS 884

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GLA    +  EEA   +  ++     +  + +  K+  R   +V TL GR   +P I+
Sbjct: 885  AFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIR 944

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGP 1080
            S   S+R  +ER AIN P+QG+AAD+   AM  +      K L  ++LLQVHDE++ E P
Sbjct: 945  SNNPSERASVERQAINAPIQGTAADIIRRAMTRMEDALEAKRLTARMLLQVHDELVFEVP 1004

Query: 1081 SESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
             +  E    ++   M +       LRV L V+A+ A NW  A
Sbjct: 1005 DDEVEATIPVIAGVMEEAPAPALTLRVPLVVEARAAGNWEEA 1046


>gi|167764029|ref|ZP_02436156.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC 43183]
 gi|167698145|gb|EDS14724.1| DNA-directed DNA polymerase [Bacteroides stercoris ATCC 43183]
          Length = 952

 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/349 (34%), Positives = 176/349 (50%), Gaps = 33/349 (9%)

Query: 779  FATEQEAREACD----AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTE 833
            + T +E  E+       I  + E   +  L+S +I  L    ++ + GR+H S N   T 
Sbjct: 631  YVTSEEVLESLRNKHAIIGKILEYRGLKKLLSTYIDALP-QLINPRTGRIHTSFNQAVTA 689

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+D
Sbjct: 690  TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMID 749

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +G D H+ TA  +Y      V+                  + D  A  RRKAK  NF
Sbjct: 750  AFLSGYDIHAATAAKIY-----KVD------------------INDVTADMRRKAKTANF 786

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++    +V  + +   + +R + +V T+  R 
Sbjct: 787  GIIYGISVFGLAERMNVPRQEAKELIDGYFETYPQVKEYMDRSIQVARENGYVETIFHRK 846

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHD 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  +   L  K++LQVHD
Sbjct: 847  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMSLIYQRLQSNNLKAKMILQVHD 906

Query: 1074 EVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            E+    P    E+ + IV+E M + +     + V L  D    +NW  A
Sbjct: 907  ELNFSVPEAEKEIIQKIVIEEMERAY----RMLVPLKADFGWGKNWLEA 951



 Score = 45.8 bits (107), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 137/362 (37%), Gaps = 84/362 (23%)

Query: 310 NDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLV 369
           N A  GTG  K +           + ++L  F  +  ++D     KK++  L  K    +
Sbjct: 335 NFADNGTGDAKNS-----------ILTRLEMFDVDYQLIDTEEKRKKIIQKLLTKE---I 380

Query: 370 HACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFA 429
            + DTE    +     P++  E++  S      +D  N    + V         ++NEF 
Sbjct: 381 LSIDTETTGTE-----PME-AELVGMSF-----SDAENQAYYVPVPANRDEALKIVNEFR 429

Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
           P +E+ +  KV  N  +D  VL+NYG++V G   DTM    +     R    Y       
Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQPELRHNMDY------- 482

Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR 549
               ++E    YQ               I + ++ G +     G   K     P E++ R
Sbjct: 483 ----LAEIYLHYQ--------------TIHIDELIGAK-----GKNQKNMRDLPPEDVYR 519

Query: 550 EERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEIL 609
                   Y+  D+  TLKL   L+K+L E + +              + E   P   +L
Sbjct: 520 --------YACEDADVTLKLKNVLEKELKEHAAE------------HLFYEIEMPLVPVL 559

Query: 610 VKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASK--HCPDAKYMNVGSDTQLRQL 667
           V +E+ G+ +D E L +         E    R ++   +       +  N+GS  Q+ ++
Sbjct: 560 VNIESNGVRIDTEALKQ-------SSEHFTLRLQEIEKEIYALAGGETFNIGSPKQVGEV 612

Query: 668 LF 669
           LF
Sbjct: 613 LF 614


>gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
            [Pelotomaculum thermopropionicum SI]
          Length = 882

 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/344 (36%), Positives = 184/344 (53%), Gaps = 32/344 (9%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
            +E   A +A++ + E   +  L S +   L  + ++ + G++H + +   T TGRLS+  
Sbjct: 566  EELAAAHEAVAKILEYRQMAKLKSTYADGL-AALINPETGKLHTTFHQTVTNTGRLSSSD 624

Query: 842  PNLQNQPA-LEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
            PNLQN P  LE  R  IR+ FI   P N L+ ADY Q+ELR+LAH++   +++ AFK G 
Sbjct: 625  PNLQNIPIRLEAGRL-IRKVFIPGRPENLLLTADYSQIELRVLAHISGDPALIKAFKNGE 683

Query: 900  DFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGK 959
            D H+RTA  ++     AV   +V  E                   R +AK +NF I YG 
Sbjct: 684  DIHTRTAAEIF-----AVRPEEVTREM------------------RTRAKAVNFGIVYGL 720

Query: 960  TPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAI 1019
            +  GLARD KVS +EA++ ++ ++     V  + E   +E+R   +V TLL R R  P +
Sbjct: 721  SDFGLARDIKVSRQEARRYIENYFARYAGVKDYIERIIREARQKGYVTTLLNRRRYLPDL 780

Query: 1020 KSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEG 1079
             S  R+ R+  ER A+NTP+QGSAAD+   AM+ I +      L  K++LQVHDE+I + 
Sbjct: 781  FSPNRTIRSFGERTAMNTPIQGSAADIIKLAMVNIHRELAEHGLKAKMILQVHDELIFDA 840

Query: 1080 PSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            P+   +  K +V  CM         L V L V+ K  +NWY  K
Sbjct: 841  PAVEIDQLKDLVKRCMENAL----VLEVPLLVEIKAGRNWYDVK 880


>gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1052

 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 171/342 (50%), Gaps = 25/342 (7%)

Query: 782  EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSAR 840
            E+ A+   D    +     +  L S +   LQ     G N RVH S  +  T TGRLS+ 
Sbjct: 734  EELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTN-RVHTSFALAATTTGRLSSS 792

Query: 841  RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
             PNLQN P   ++  +IR+AF+A  G  LI ADY Q+ELR+LAH+A+   + +AF+ G D
Sbjct: 793  DPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGID 852

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H+ TA  M+         G  L +  G+               RR+AK +NF I YG +
Sbjct: 853  IHAATASAMF---------GVALDQMTGD--------------LRRRAKTINFGIIYGIS 889

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GLA    +  EEA   +  ++     +  + +  K+  R   +V TL GR   +P I+
Sbjct: 890  AFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIR 949

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGP 1080
            S   S+R  +ER AIN P+QG+AAD+   AM  +      K L  ++LLQVHDE++ E P
Sbjct: 950  SNNPSERASVERQAINAPIQGTAADIIRRAMTRMEDALEAKRLTARMLLQVHDELVFEVP 1009

Query: 1081 SESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
             +  E    ++   M +       LRV L V+A+ A NW  A
Sbjct: 1010 DDEVEATIPVIAGVMEEAPAPALTLRVPLVVEARAAGNWEEA 1051


>gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M]
 gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
          Length = 994

 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 710  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRILAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 770  QIELRILAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 807

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 808  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 865

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 866  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 925

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 926  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDAR 985

Query: 1115 CAQNW 1119
             A NW
Sbjct: 986  AAHNW 990



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 406 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 453 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 512 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 540

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660


>gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
 gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
          Length = 872

 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/331 (35%), Positives = 181/331 (54%), Gaps = 29/331 (8%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQP 848
            + +  + E      L S ++ PL    ++ K  R+H S N + T TGRLS+  PNLQN P
Sbjct: 563  EIVPLILEYRKYQKLKSTYVDPLPDL-INPKTERIHTSFNQLVTATGRLSSTEPNLQNIP 621

Query: 849  ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
               ++  +IR+ F+A     L+  DY Q+ELR+LAH++  ++++ A++ G D H++TA  
Sbjct: 622  IRTEEGRRIRKVFVAEERKELLAVDYSQIELRVLAHISQDENLIAAYREGQDIHTKTAAE 681

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E  +V  +                  +RR+AK +NF IAYG +P GLA+D 
Sbjct: 682  VF-----GLEASEVSYQ------------------QRRRAKAINFGIAYGISPWGLAKDI 718

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             VS +EA+  ++ + N   +V  + + + K+++ + +V T+L R R  P I S    +R+
Sbjct: 719  NVSKQEAEDYINQYLNRYPKVKEYMDHQIKQAKEEGYVTTILNRRRYLPEINSSNYHRRS 778

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AINTP+QGSAAD+   AMLE ++    +EL  K+LLQVHDE+I E P E  E  +
Sbjct: 779  FGERMAINTPIQGSAADIMKLAMLESARVLDERELDTKILLQVHDELIFEVPPEELEEVQ 838

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             ++   M         L V L VD K   NW
Sbjct: 839  QVIKAEMEDVI----ELDVPLKVDLKVGSNW 865


>gi|88697143|gb|ABD48716.1| thermostable DNA polymerase I [Geobacillus sp. LH8]
          Length = 876

 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/311 (37%), Positives = 175/311 (56%), Gaps = 33/311 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY
Sbjct: 595  VHPDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADY 654

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 655  SQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIF-HVSE------------------- 694

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF + YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 695  ---EEVTATMRRQAKAVNFGVVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKRYME 751

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 752  TIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDL 811

Query: 1055 SKNARLKE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
            +  ARLKE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD
Sbjct: 812  A--ARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAV----ALRVPLKVD 865

Query: 1113 AKCAQNWYSAK 1123
                  WY AK
Sbjct: 866  YHYGPTWYDAK 876


>gi|332653862|ref|ZP_08419606.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16]
 gi|332516948|gb|EGJ46553.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16]
          Length = 900

 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/307 (35%), Positives = 163/307 (53%), Gaps = 28/307 (9%)

Query: 817  VSGKNGRVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V   +GR+H C  N  T TGRLS+  PNLQN P   +   ++R+ F+A PG  L+ ADY 
Sbjct: 620  VIAPDGRIHTCFQNTVTATGRLSSTEPNLQNIPIRTQLGAQLREMFVAAPGKVLVDADYS 679

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A  ++M++ F +G D H+ TA  ++      V   QV  +          
Sbjct: 680  QIELRLLAHMAGDQAMIEGFHSGADIHTITASQVF-----GVTPDQVTPQM--------- 725

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR AK +NF I YG +P  L++D  VSV++AK+ +D ++     V  + + 
Sbjct: 726  ---------RRSAKAVNFGIVYGISPFSLSQDIGVSVQQAKEYMDKYFAHYSGVRAYMDG 776

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              ++ + D +V TL GR R  P +KS   + R+  ER A+N P+QG+AAD+   AM+ + 
Sbjct: 777  VVEQGKQDGYVATLFGRRRWLPELKSSNFNTRSFGERVALNMPIQGTAADIIKLAMIRVR 836

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
                 + L  +L+LQVHDE+I+E P   AE    +V E M     G   L + L  +   
Sbjct: 837  DRLLREGLEGRLVLQVHDELIVECPEAEAETVCRLVKEEM----EGVCQLSIPLLAETHA 892

Query: 1116 AQNWYSA 1122
               W SA
Sbjct: 893  GTTWASA 899


>gi|421871274|ref|ZP_16302896.1| DNA polymerase I [Brevibacillus laterosporus GI-9]
 gi|372459901|emb|CCF12445.1| DNA polymerase I [Brevibacillus laterosporus GI-9]
          Length = 897

 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/311 (35%), Positives = 169/311 (54%), Gaps = 33/311 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DY 874
            + GK GRVH   N   T TGRLS+  PNLQN P   ++  KIR+AF+    N  I+A DY
Sbjct: 616  IHGKTGRVHTRFNQATTATGRLSSTEPNLQNIPIRLEEGRKIRKAFVPTNDNCYILAADY 675

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELRILAH++   ++++AF    D H+RTAM+++    + V +               
Sbjct: 676  SQIELRILAHISKDPNLIEAFVNNMDIHTRTAMDVFGVSEDEVTSNM------------- 722

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                      RR+AK +NF I YG +  GL+++  +  +EA + +  +++    V  + E
Sbjct: 723  ----------RRQAKAVNFGIVYGISDFGLSQNLNIPRKEAAEFIARYFDVFSGVQNYME 772

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              K +++ D +V TLL R R  P I S   + R+  ER A+NTP+QG+AAD+   AM+++
Sbjct: 773  EIKHQAKKDGYVTTLLHRRRYLPDIASRNFNLRSFAERTAMNTPIQGTAADIIKLAMIQM 832

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVD--LSVD 1112
             +     +L  ++LLQVHDE++ E P +  E  + +V   M      +N L++D  L VD
Sbjct: 833  QEALVRNQLKSRMLLQVHDELVFEVPEDELETMQKLVANVM------ENALKLDVPLKVD 886

Query: 1113 AKCAQNWYSAK 1123
                + WY AK
Sbjct: 887  VNYGETWYDAK 897


>gi|418054846|ref|ZP_12692902.1| DNA polymerase I [Hyphomicrobium denitrificans 1NES1]
 gi|353212471|gb|EHB77871.1| DNA polymerase I [Hyphomicrobium denitrificans 1NES1]
          Length = 998

 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/308 (36%), Positives = 157/308 (50%), Gaps = 25/308 (8%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GR+H S  +  T TGRL++  PNLQN P   K+  +IR AFIA  G  L+ ADY 
Sbjct: 713  INAETGRIHTSYALGATTTGRLASSDPNLQNIPIRTKEGREIRTAFIADKGMKLVSADYS 772

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 773  QIELRVLAHVADIPQLKKAFAEGLDIHAMTASEMFG----------------------VP 810

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            + KD  A  RR+AK +NF I YG +  GLA    +S EEA   +  ++     +  + +A
Sbjct: 811  I-KDMPAEVRRRAKAINFGIIYGISAFGLANQLGISREEAGDYIKTYFQRFPGIRDYMDA 869

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             KK+     HV T+ GR   +P I +   S R  +ERAAIN P+QGSAAD+   AM+ + 
Sbjct: 870  TKKQVHAHGHVETIFGRRIHYPEINTKNPSMRGFLERAAINAPIQGSAADIIRRAMIRMP 929

Query: 1056 KNARLKEL-GWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
               ++ +L   K+LLQVHDE++ E     A          M         L V + VDAK
Sbjct: 930  AALKIAKLPSAKMLLQVHDELVFEVADSDASALIKTACRVMETAAEPAVKLSVPIHVDAK 989

Query: 1115 CAQNWYSA 1122
             A NW  A
Sbjct: 990  AADNWDEA 997


>gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 925

 Score =  187 bits (475), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 162/309 (52%), Gaps = 28/309 (9%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + ++ + GRVH S  +  T TGRLS+  PNLQN P   ++  KIR AFIA PG+ L+ AD
Sbjct: 643  AQINPRTGRVHTSFALALTTTGRLSSSDPNLQNIPIRSEEGRKIRHAFIAEPGHVLLSAD 702

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR++AH+A  K ++ AF  G D H+ TA  ++             +   G D   
Sbjct: 703  YSQIELRLVAHVACIKGLIQAFHDGADIHAITAAQVFG------------VPVEGMD--- 747

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             P+L       RR+AK +NF I YG +  GLA+   +S  EAK  +D ++    E+  + 
Sbjct: 748  -PML-------RRRAKAINFGIIYGISAFGLAQQLGISNGEAKSYIDAYFGRYPEIRDFM 799

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K+E+R +  V T  GR    P IK    + R   ERAAIN P+QG AAD+   AM+ 
Sbjct: 800  ERTKEEARANGFVLTPFGRKVFTPGIKDKNGAMRAFAERAAINGPIQGGAADIIKRAMIR 859

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            +      + L  +LLLQVHDE++LE P    +  +A+V   M         L V L  +A
Sbjct: 860  LPAALAAEGLKARLLLQVHDELVLEVPVAEQDATRAVVCRVMES----AAQLDVPLVAEA 915

Query: 1114 KCAQNWYSA 1122
                +W  A
Sbjct: 916  GFGTSWGDA 924


>gi|408788349|ref|ZP_11200070.1| DNA polymerase I [Rhizobium lupini HPC(L)]
 gi|408485938|gb|EKJ94271.1| DNA polymerase I [Rhizobium lupini HPC(L)]
          Length = 998

 Score =  187 bits (475), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/299 (37%), Positives = 160/299 (53%), Gaps = 26/299 (8%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  + +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ ADY Q+ELR+
Sbjct: 720  RVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRV 779

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   + +AF+ G D H+ TA  M+                       VP+  +  
Sbjct: 780  LAHVADIPQLRNAFENGIDIHAMTASEMFG----------------------VPV--EGM 815

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    ++  EA + +  ++     +  + EA K  +
Sbjct: 816  PSEVRRRAKAINFGIIYGISAFGLANQLGIARSEAGEYIKKYFERFPGIRDYMEATKAFA 875

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P I+S   S +   ERAAIN P+QGSAAD+   AM+ I      
Sbjct: 876  RENGYVETIFGRRAHYPEIRSSNPSVKAFNERAAINAPIQGSAADIIRRAMVRIEPALEA 935

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            + L  ++LLQVHDE+I E      E    +VV  M        +++V L VDA+ A NW
Sbjct: 936  ENLSARMLLQVHDELIFEVDEAEIEKTLPVVVSVMENAAMPAISMKVPLQVDARAADNW 994



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 137/345 (39%), Gaps = 107/345 (31%)

Query: 358 VWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIY---SGPEADFGNGKSCIWV 414
           +W+   +   +V A DTE   +D  Q       E++ FS+    +G +A  G+     ++
Sbjct: 388 LWVAAARETGVV-AFDTETTSLDPMQ------AELVGFSLAIADNGKDAS-GSDIRAAYI 439

Query: 415 DLL--DGGGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVLENYG 455
            L    G G DL ++         PF           ED ++ KV  N  +D  +++ +G
Sbjct: 440 PLTHKTGSGGDLFSDGIRLAEGQVPFDEALVRLKDLLEDEAVLKVAQNLKYDYLLMKRHG 499

Query: 456 LKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFM 515
           + +  F  DTM ++ + ++ + T G  SL                           E ++
Sbjct: 500 VVMQSFD-DTMLISYVLEAGKATHGMDSLS--------------------------ERWL 532

Query: 516 GK--ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
           G   I  KD+ G         +GK S      ++ +       +Y+A D+  TL+L+ +L
Sbjct: 533 GHTPIPYKDVAG---------SGKSSVTFDFVDIDKA-----TAYAAEDADVTLRLWMAL 578

Query: 574 KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----E 628
           K +L+             + +   Y+   +P   +L  ME  G+ VDR+ LS +     +
Sbjct: 579 KPRLVS------------ERLTKVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQ 626

Query: 629 KVARAEQEA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
           K A  E+E    A  RF              N+GS  QL  +LFG
Sbjct: 627 KAAAFEEEIYELAGERF--------------NIGSPKQLGDILFG 657


>gi|424909057|ref|ZP_18332434.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae USDA 2370]
 gi|392845088|gb|EJA97610.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae USDA 2370]
          Length = 1001

 Score =  187 bits (475), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/299 (37%), Positives = 160/299 (53%), Gaps = 26/299 (8%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  + +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ ADY Q+ELR+
Sbjct: 723  RVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRV 782

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   + +AF+ G D H+ TA  M+                       VP+  +  
Sbjct: 783  LAHVADIPQLRNAFENGIDIHAMTASEMFG----------------------VPV--EGM 818

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    ++  EA + +  ++     +  + EA K  +
Sbjct: 819  PSEVRRRAKAINFGIIYGISAFGLANQLGIARSEAGEYIKKYFERFPGIRDYMEATKAFA 878

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P I+S   S +   ERAAIN P+QGSAAD+   AM+ I      
Sbjct: 879  RENGYVETIFGRRAHYPEIRSSNPSVKAFNERAAINAPIQGSAADIIRRAMVRIEPALEA 938

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            + L  ++LLQVHDE+I E      E    +VV  M        +++V L VDA+ A NW
Sbjct: 939  ENLSARMLLQVHDELIFEVDEAEIEKTLPVVVSVMENAAMPAISMKVPLQVDARAADNW 997



 Score = 49.7 bits (117), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 137/345 (39%), Gaps = 107/345 (31%)

Query: 358 VWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIY---SGPEADFGNGKSCIWV 414
           +W+   +   +V A DTE   +D  Q       E++ FS+    +G +A  G+     ++
Sbjct: 391 LWVAAARETGVV-AFDTETTSLDPMQ------AELVGFSLAIADNGKDAS-GSDIRAAYI 442

Query: 415 DLL--DGGGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVLENYG 455
            L    G G DL ++         PF           ED ++ KV  N  +D  +++ +G
Sbjct: 443 PLTHKTGSGGDLFSDGIRLAEGQVPFDEALVRLKDLLEDEAVLKVAQNLKYDYLLMKRHG 502

Query: 456 LKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFM 515
           + +  F  DTM ++ + ++ + T G  SL                           E ++
Sbjct: 503 VVMQSFD-DTMLISYVLEAGKATHGMDSLS--------------------------ERWL 535

Query: 516 GK--ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
           G   I  KD+ G         +GK S      ++ +       +Y+A D+  TL+L+ +L
Sbjct: 536 GHTPIPYKDVAG---------SGKSSVTFDFVDIDKA-----TAYAAEDADVTLRLWMAL 581

Query: 574 KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----E 628
           K +L+             + +   Y+   +P   +L  ME  G+ VDR+ LS +     +
Sbjct: 582 KPRLVS------------ERLTKVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQ 629

Query: 629 KVARAEQEA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
           K A  E+E    A  RF              N+GS  QL  +LFG
Sbjct: 630 KAAAFEEEIYELAGERF--------------NIGSPKQLGDILFG 660


>gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
          Length = 978

 Score =  187 bits (475), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRILAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRILAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 910  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDAR 969

Query: 1115 CAQNW 1119
             A NW
Sbjct: 970  AAHNW 974



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|444921443|ref|ZP_21241279.1| DNA polymerase I [Wohlfahrtiimonas chitiniclastica SH04]
 gi|444507481|gb|ELV07657.1| DNA polymerase I [Wohlfahrtiimonas chitiniclastica SH04]
          Length = 914

 Score =  187 bits (475), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 166/307 (54%), Gaps = 30/307 (9%)

Query: 815  SNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + V+ + GR+H S N   T TGRLS+ +PNLQN P   ++  KIR+AFIA PG  +I AD
Sbjct: 632  AEVNPQTGRIHTSFNQALTSTGRLSSSKPNLQNIPVRTEEGRKIREAFIAKPGYRMISAD 691

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR++AH +  +++++AFK   D H  TA  ++                H      
Sbjct: 692  YSQIELRLMAHFSGDETLINAFKNDLDIHRATASEVF----------------H------ 729

Query: 934  VPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
             PL  D  + E RR AK +NF + YG    GLA+   +S  +A++ +  +++    +L +
Sbjct: 730  TPL--DEVSGELRRSAKAINFGLIYGMGAFGLAKQLGISRGQAQEYIQRYFSRYPTILQF 787

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             E  K+++R + +V TLLGR    P I S    Q+   ER A+N P+QG+AAD+   AM+
Sbjct: 788  MEDAKEKARANGYVETLLGRRLPLPEINSSNGMQKAGAERIAVNAPLQGTAADIIKLAMI 847

Query: 1053 EISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
            E+ +      L  K+LLQVHDE++LE   + AE   A++   M         L+V L VD
Sbjct: 848  EVDQKLNETGLDAKVLLQVHDELVLEASEKDAEKVAALLKTAMENVI----TLKVPLKVD 903

Query: 1113 AKCAQNW 1119
                 NW
Sbjct: 904  VAIGSNW 910



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 129/315 (40%), Gaps = 63/315 (20%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAP 430
           A DTE   +D  Q   V     I  +I +G EA +   +  + V       +D+L+  AP
Sbjct: 340 AVDTETDGLDAMQAKLVG----ISLAI-TGGEAIYIPLQHDLLVAPEQLPMQDVLDRLAP 394

Query: 431 FFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGD 490
             EDP++  V  N  +D H+ + YG+ ++G   DTM  + +WD++ +    ++++ L   
Sbjct: 395 LLEDPNVALVGQNIKYDWHIFKRYGITLNGIADDTMLASYVWDATEK----HNMDDLA-- 448

Query: 491 RKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQRE 550
              +      +++   KG                     KK  +  +I    P+E     
Sbjct: 449 LNYLEHTTTPFEEIAGKG---------------------KKQKTFNEI----PIETATH- 482

Query: 551 ERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILV 610
                  Y+A D+  TL+LY +L  ++  +            ++   YQ    P   +L 
Sbjct: 483 -------YAAEDADITLRLYHALSPRVASID-----------TLQKLYQTIEMPLLTVLA 524

Query: 611 KMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
           KME EG+LV+  +L  + +      +A   +  + A +        N+GS  QL  +LF 
Sbjct: 525 KMEHEGILVNVPHLEALSRELSQRLDALEAQAYELAGET------FNLGSPKQLGTILFE 578

Query: 671 --GKPNSKDDSESLP 683
             G P  K  ++  P
Sbjct: 579 KLGLPVVKKTAKGQP 593


>gi|138896291|ref|YP_001126744.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
 gi|134267804|gb|ABO67999.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
          Length = 878

 Score =  187 bits (475), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/311 (38%), Positives = 175/311 (56%), Gaps = 33/311 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY
Sbjct: 597  VRPDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADY 656

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 657  SQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIF-HVSE------------------- 696

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 697  ---EEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYME 753

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 754  NIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDL 813

Query: 1055 SKNARLKE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
            +  ARLKE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD
Sbjct: 814  A--ARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQAV----TLRVPLKVD 867

Query: 1113 AKCAQNWYSAK 1123
                  WY AK
Sbjct: 868  YHYGPTWYDAK 878


>gi|399041520|ref|ZP_10736575.1| DNA polymerase I [Rhizobium sp. CF122]
 gi|398060290|gb|EJL52119.1| DNA polymerase I [Rhizobium sp. CF122]
          Length = 999

 Score =  187 bits (475), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 158/301 (52%), Gaps = 28/301 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 719  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 778

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF  G D H+ TA  M+                       VP+  +  
Sbjct: 779  LAHVAEIPQLTQAFADGVDIHAMTASEMF----------------------SVPV--EGM 814

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + ++RK+ +
Sbjct: 815  PSEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMDSRKQMA 874

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R   +V T+ GR   +P I+S   S R   ERAAIN P+QGSAAD+   AM+++      
Sbjct: 875  RDKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADIIRRAMIKMEPALAE 934

Query: 1061 KELG--WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              LG   ++LLQVHDE+I E      E A  I+V  M         +RV L VDA+ A N
Sbjct: 935  AGLGDRVRMLLQVHDELIFEVEDADVEKATPIIVSVMENATMPALEMRVPLKVDARSATN 994

Query: 1119 W 1119
            W
Sbjct: 995  W 995



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 99/251 (39%), Gaps = 61/251 (24%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED SI KV  N  +D  +++ YG++ + F  DTM ++ + D+     G 
Sbjct: 465 RDALPRLKALLEDESILKVAQNLKYDYLLMKRYGVETTNFD-DTMLISYVLDAG---TGA 520

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I+ KD+ G         +GK +
Sbjct: 521 HGMDPLS-----------------------EKFLGHTPIAYKDVAG---------SGKSN 548

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L              + +   Y+
Sbjct: 549 ITFDLVDIDRATH-----YAAEDADITLRLWLVLKPRL------------AAEKLTTVYE 591

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   +L  ME  G+ VDR+ LS +         A  +   K A           +G
Sbjct: 592 RLERPLLPVLAHMEARGITVDRQILSRLSGDLAQGAAALEDEIYKLAGGR------FTIG 645

Query: 660 SDTQLRQLLFG 670
           S  QL  +LFG
Sbjct: 646 SPKQLGDILFG 656


>gi|450166566|ref|ZP_21882369.1| DNA polymerase I [Streptococcus mutans B]
 gi|449239555|gb|EMC38271.1| DNA polymerase I [Streptococcus mutans B]
          Length = 878

 Score =  187 bits (475), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 180/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++    E+  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPEIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16]
 gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus]
 gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16]
          Length = 876

 Score =  187 bits (475), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/311 (38%), Positives = 175/311 (56%), Gaps = 33/311 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY
Sbjct: 595  VRPDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADY 654

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 655  SQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIF-HVSE------------------- 694

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 695  ---EEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYME 751

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 752  NIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDL 811

Query: 1055 SKNARLKE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
            +  ARLKE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD
Sbjct: 812  A--ARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQAV----TLRVPLKVD 865

Query: 1113 AKCAQNWYSAK 1123
                  WY AK
Sbjct: 866  YHYGPTWYDAK 876


>gi|189464890|ref|ZP_03013675.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
            17393]
 gi|189437164|gb|EDV06149.1| DNA-directed DNA polymerase [Bacteroides intestinalis DSM 17393]
          Length = 941

 Score =  187 bits (475), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/351 (33%), Positives = 177/351 (50%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-IN 831
            + T +E  E+     + I  + E   +  L+  ++  LPL    ++ + GR+H S N   
Sbjct: 620  YVTSEEVLESLRNKHEVIGKILEYRGLKKLLGTYVDALPLL---INPRTGRIHTSFNQAV 676

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  ++D  +IR+AFI         ADY Q+ELRI+AHL+  K+M
Sbjct: 677  TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDDCEFFSADYSQIELRIMAHLSEDKNM 736

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y      ++                  +KD     RRKAK  
Sbjct: 737  IDAFLSGYDIHAATAAKIY-----KID------------------IKDVTPDMRRKAKTA 773

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    +V  + +   + +R   +V T+  
Sbjct: 774  NFGIIYGISIFGLAERMNVDRKEAKELIDGYFETYPQVREYMDKSIQVAREQGYVETIFH 833

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S   + R + ER AIN P+QGSAAD+   AM  I +  +  +L  K++LQV
Sbjct: 834  RKRFLPDINSRNATVRGYAERNAINAPIQGSAADIIKVAMARIYERFQSYKLKAKMILQV 893

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+    P    E  + IV+E M + +     + V L  D    +NW  A
Sbjct: 894  HDELNFSVPEAEKEFVQQIVIEEMERAY----RMHVPLRADCGWGKNWLKA 940



 Score = 42.4 bits (98), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 50/203 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           ++NEF P +E+ +  KV  N  +D  VL+NYG++V G   DTM    +     R    Y 
Sbjct: 414 IVNEFRPLYENENSMKVGQNIKYDILVLQNYGVEVKGELFDTMLAHYVLQPELRHNMDY- 472

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
                     ++E    YQ               I + ++ G +     G   K     P
Sbjct: 473 ----------LAEIYLHYQ--------------TIHIDELIGPK-----GKNQKNMRDLP 503

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            EE+ +        Y+  D+  TLKL     K +LE   K  G       +   + E   
Sbjct: 504 PEEVYK--------YACEDADITLKL-----KNVLEEELKKQG-------VEHLFYEIEM 543

Query: 604 PFGEILVKMETEGMLVDREYLSE 626
           P   +L  ME+ G+ +D E L +
Sbjct: 544 PLVRVLANMESNGVRIDTETLKQ 566


>gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10]
 gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10]
          Length = 928

 Score =  187 bits (475), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 163/309 (52%), Gaps = 24/309 (7%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            ++++    RVH S ++  T TGRLS+  PNLQN P   +   +IR+ FIA PG+ L+ AD
Sbjct: 642  AHINRDTKRVHTSFSLAATTTGRLSSTEPNLQNIPIRTEAGRQIREVFIAEPGHVLVAAD 701

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+AN +S+  AF+ G D H+ TA  ++             +   G D   
Sbjct: 702  YSQVELRLLAHIANVESLKQAFRDGTDIHAMTASEVFG------------VPIEGMD--- 746

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             P++       RRKAK +NF + YG +  GLA    V  +EAK  +D ++ +   +  + 
Sbjct: 747  -PMV-------RRKAKAINFGVIYGISAFGLANQIGVKRDEAKAFIDAYFEKFPGIRAYM 798

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            +  K ++    +V T+ GR   FP I+    + R   ER AIN P+QGSAADV   AM+ 
Sbjct: 799  DEMKAKAAETGYVETIFGRRAHFPGIRDKNPNMRMFAERQAINAPIQGSAADVIRRAMIR 858

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            +        L  K+LLQVHDE++ E P   A    A+  + M +  +    L V L VDA
Sbjct: 859  MDDALNAANLDAKMLLQVHDELVFEVPENQAADLIALTAKVMGEACSPALELSVPLVVDA 918

Query: 1114 KCAQNWYSA 1122
            K  + W  A
Sbjct: 919  KAGRTWGEA 927



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 59/254 (23%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
           L    P  EDP++ K+  N+ +D  VL  YG+ V+ +  DTM ++ + ++      G+ +
Sbjct: 399 LKVLKPLLEDPAVLKIGQNFKYDLGVLSRYGIDVAPYD-DTMLISYVMEAGLH---GHGM 454

Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
           +AL                ++  G+T       I  K+I G  K        +I+     
Sbjct: 455 DALA---------------ELHLGHT------CIPFKEICGTGK-------NQIT----F 482

Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQP 604
           +++  ++  L   Y+A D+  TL+L++ LK  L+             K M   Y+   +P
Sbjct: 483 DKVPLDKATL---YAAEDADITLRLWEILKPALV------------AKKMATVYETLERP 527

Query: 605 FGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQL 664
             ++L KME  G+ VD + L+      R   +         A  H    +  NV S  Q+
Sbjct: 528 MADVLSKMERVGIKVDPDQLN------RLSSDFGQKMMAAEAEAHEAAGRDFNVASPKQI 581

Query: 665 RQLLFG--GKPNSK 676
            ++LFG  G P  K
Sbjct: 582 GEILFGEMGLPGGK 595


>gi|418937089|ref|ZP_13490762.1| DNA polymerase I [Rhizobium sp. PDO1-076]
 gi|375056256|gb|EHS52458.1| DNA polymerase I [Rhizobium sp. PDO1-076]
          Length = 995

 Score =  187 bits (475), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/310 (37%), Positives = 165/310 (53%), Gaps = 28/310 (9%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  +  RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ ADY 
Sbjct: 709  VHPQTKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYS 768

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 769  QIELRVLAHVADIPQLRQAFADGIDIHAMTASEMF----------------------GVP 806

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E
Sbjct: 807  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIKDYME 864

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            + K  +R + +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM++I
Sbjct: 865  STKAFARENGYVETIFGRRAYYPEIRSSNPSMRAFNERAAINAPIQGSAADVIRRAMIKI 924

Query: 1055 SKNARLKELG--WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
                    LG   ++LLQVHDE+I E   ++ + A  ++V+ M        ++RV L VD
Sbjct: 925  EPVLAKAGLGERARMLLQVHDELIFEVEDDAIKAAMPLIVDTMENAAMPAVSMRVPLKVD 984

Query: 1113 AKCAQNWYSA 1122
            A+ A NW  A
Sbjct: 985  ARAAHNWDEA 994


>gi|242280423|ref|YP_002992552.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
 gi|242123317|gb|ACS81013.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
          Length = 904

 Score =  187 bits (474), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 183/355 (51%), Gaps = 33/355 (9%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            KGA+++ N +        E    I+ + E   ++ L S ++ PL    +   NGR+H + 
Sbjct: 581  KGALSTANSVLEKLSGQHEI---ITDILEYRKMEKLRSTYLEPL--PKLVNANGRIHTNF 635

Query: 829  N-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N + T TGRLS+  PNLQN P       ++R  F A  G  L  ADY Q+ELR+LAH + 
Sbjct: 636  NQLATATGRLSSSGPNLQNIPIRGDQGKRMRACFTAGEGLRLAAADYSQVELRVLAHFSG 695

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
              +++ AF+   D HSRTA  ++                   D+ P     D  + ERR 
Sbjct: 696  DPALVSAFEHDEDIHSRTAALLF-------------------DRDPA----DVTSDERRN 732

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF + YG  P  L+R+  + + EAK+ +  ++ +   +  + ++  ++ R   +V 
Sbjct: 733  AKTINFGLIYGMGPQKLSRELGIKINEAKEFIAKYFEKLDVLKEFYDSVVEQGREKGYVT 792

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            TL GR R  P + S +    +   R AINT +QGSAAD+   AM++++ NA +K LG +L
Sbjct: 793  TLSGRRRLLPELHSTSPQILSQARRQAINTVIQGSAADIIKMAMIKVADNAEIKHLGGRL 852

Query: 1068 LLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            +LQ+HDE+++EGP E+ E     + + + K       L V L VD    +NW  A
Sbjct: 853  ILQIHDELLVEGPEENIEE----IGKLLQKDMQTVATLAVPLKVDLGLGRNWAQA 903


>gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94]
 gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94]
 gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1]
          Length = 994

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 710  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 770  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 807

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 808  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 865

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 866  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 925

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 926  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDAR 985

Query: 1115 CAQNW 1119
             A NW
Sbjct: 986  AAHNW 990



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 406 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 453 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 512 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 540

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660


>gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
 gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
          Length = 952

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 119/349 (34%), Positives = 177/349 (50%), Gaps = 33/349 (9%)

Query: 779  FATEQEAREACD----AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTE 833
            + T +E  E+       I  + E   +  L+S +I  L    ++ + GR+H S N   T 
Sbjct: 631  YVTSEEVLESLRNKHAIIGKILEYRGLKKLLSTYIDALP-QLINPRTGRIHTSFNQAVTA 689

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  ++M+D
Sbjct: 690  TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRNMID 749

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +G D H+ TA  +Y      V+  +V  +                   RRKAK  NF
Sbjct: 750  AFLSGYDIHAATAAKIY-----KVDISEVTTDM------------------RRKAKTANF 786

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    VS +EAK+ +D ++    ++  + +   + +R + +V T+  R 
Sbjct: 787  GIIYGISVFGLAERMNVSRQEAKELIDGYFETYPQIKEYMDKSIQVARENGYVETIFHRK 846

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHD 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  +   L  K++LQVHD
Sbjct: 847  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMSLIYQRIQSNNLKAKMILQVHD 906

Query: 1074 EVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            E+    P    E+ + IV+E M + +     + V L  D    +NW  A
Sbjct: 907  ELNFSVPEAEKEIIQKIVIEEMERAY----RMLVPLKADFGWGKNWLEA 951



 Score = 46.6 bits (109), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           ++NEF P +E+ +  KV  N  +D  VL+NYG++V G   DTM    +     R    Y 
Sbjct: 424 IVNEFRPLYENENSMKVGQNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQPELRHNMDYL 483

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
            E     R +  ++        S+G   +      SM+D+                   P
Sbjct: 484 AEIYLRYRTIHIDELIG-----SRGKNQK------SMRDL-------------------P 513

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            E++ R        Y+  D+  TLKL   L+K+L + S +              + E   
Sbjct: 514 PEDVYR--------YACEDADVTLKLKNVLEKELKKQSAE------------HLFYEIEM 553

Query: 604 PFGEILVKMETEGMLVDREYLSE 626
           P   +LV +E+ G+ +D E L +
Sbjct: 554 PLVPVLVNIESNGVRIDTEALKQ 576


>gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
          Length = 994

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 710  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 770  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 807

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 808  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 865

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 866  ATKAFAREHGYVETIFGRRTHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 925

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 926  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDAR 985

Query: 1115 CAQNW 1119
             A NW
Sbjct: 986  AAHNW 990



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 406 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 453 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 512 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 540

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660


>gi|374287093|ref|YP_005034178.1| DNA polymerase I [Bacteriovorax marinus SJ]
 gi|301165634|emb|CBW25205.1| DNA polymerase I [Bacteriovorax marinus SJ]
          Length = 883

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 163/304 (53%), Gaps = 28/304 (9%)

Query: 821  NGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            +G++H   N N   TGRLS+  PNLQN P   +   ++R+ FIA PG  L+ ADY Q+EL
Sbjct: 607  SGKIHTHFNQNVAATGRLSSNHPNLQNIPIRSELGRRVRKGFIAGPGKILLAADYSQVEL 666

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAH +N K+M+DAFK G D H RTA  +                        VP+ ++
Sbjct: 667  RLLAHFSNDKTMIDAFKKGVDIHRRTASEIMG----------------------VPV-EE 703

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
              +++R KAK +NF + YG++  GLA   K+  +EAK+ +  ++     V  + +  K+E
Sbjct: 704  VGSNDRSKAKAVNFGLMYGQSSFGLAAALKIPRKEAKEYITNYFERFSSVKGYLDHLKEE 763

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
                 +  TL GR R    I S  R+ + + ER AIN+P+QG+AAD+   AM+ I K   
Sbjct: 764  CEKTGYAITLKGRKRYLADIHSTNRTIKANAERVAINSPIQGTAADIIKLAMINIQKVLD 823

Query: 1060 LKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             K+L  K++LQVHDE+I E      E  K I+ + M K      +L V L VD     NW
Sbjct: 824  DKKLKSKMILQVHDELIFEVVESELEEMKTILKDGMEKVV----SLSVPLDVDMGVGVNW 879

Query: 1120 YSAK 1123
            +  K
Sbjct: 880  FDLK 883


>gi|402490816|ref|ZP_10837605.1| DNA polymerase I [Rhizobium sp. CCGE 510]
 gi|401810842|gb|EJT03215.1| DNA polymerase I [Rhizobium sp. CCGE 510]
          Length = 999

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/302 (38%), Positives = 159/302 (52%), Gaps = 30/302 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 719  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 778

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 779  LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 817

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + ++RK  +R
Sbjct: 818  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMDSRKAMAR 875

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM+++     L 
Sbjct: 876  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKMEPA--LV 933

Query: 1062 ELGW----KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQ 1117
            E+G     ++LLQVHDE+I E   E  E A  ++V  M         +RV L VDA+ A 
Sbjct: 934  EVGLGDRVRMLLQVHDELIFEVEDEDVEKAMPVIVSVMENATMPALEMRVPLRVDARAAS 993

Query: 1118 NW 1119
            NW
Sbjct: 994  NW 995



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 102/256 (39%), Gaps = 71/256 (27%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED ++ KV  N  +D  +L+ YG++   F  DTM ++ + D+     G 
Sbjct: 465 RDALPRLKALLEDGAVLKVAQNLKYDYLLLKRYGIETRSFD-DTMLISYVLDAG---TGA 520

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  KD+ G         +GK +
Sbjct: 521 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 548

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L                +   Y+
Sbjct: 549 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 591

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
              +P   +L +ME  G+ VDR+ LS +     +  AR E E  V    ++         
Sbjct: 592 RLERPLLPVLARMEARGITVDRQILSRLSGELAQSAARLEDEIYVLAGERF--------- 642

Query: 655 YMNVGSDTQLRQLLFG 670
             N+GS  QL  +LFG
Sbjct: 643 --NIGSPKQLGDILFG 656


>gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
 gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 994

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 710  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 770  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 807

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 808  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 865

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 866  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 925

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 926  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDAR 985

Query: 1115 CAQNW 1119
             A NW
Sbjct: 986  AAHNW 990



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 406 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 453 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 512 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 540

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660


>gi|424788632|ref|ZP_18215383.1| DNA polymerase I family protein [Streptococcus intermedius BA1]
 gi|422112617|gb|EKU16400.1| DNA polymerase I family protein [Streptococcus intermedius BA1]
          Length = 881

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 180/347 (51%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRYLQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  K +++AF+
Sbjct: 622  SVDPNLQNIPIRLEQGRL-IRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDKHLIEAFR 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------GIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVETLFHRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         ++LLQVHDE++
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALLAGRFKSRMLLQVHDEIV 838

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P+      K +V E M         L V L  D    + WY AK
Sbjct: 839  LEVPANELTAIKTLVKEIMESAI----ELSVPLKADESAGETWYEAK 881


>gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13]
 gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13]
          Length = 994

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 710  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 770  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 807

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 808  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 865

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 866  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 925

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 926  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRHVMENAAMPAVSLAVPLRVDAR 985

Query: 1115 CAQNW 1119
             A NW
Sbjct: 986  AAHNW 990



 Score = 53.1 bits (126), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 126/327 (38%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           V A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 406 VLAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 453 GMVENQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+   + G   L                           E ++G   I+ KD+ G     
Sbjct: 512 DAGTGSHGMNPLS--------------------------ERWLGHTPIAYKDVAG----- 540

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660


>gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
 gi|217986035|gb|EEC52374.1| DNA-directed DNA polymerase [Bacteroides eggerthii DSM 20697]
          Length = 952

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 119/349 (34%), Positives = 177/349 (50%), Gaps = 33/349 (9%)

Query: 779  FATEQEAREACD----AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTE 833
            + T +E  E+       I  + E   +  L+S +I  L    ++ + GR+H S N   T 
Sbjct: 631  YVTSEEVLESLRNKHAIIGKILEYRGLKKLLSTYIDALP-QLINPRTGRIHTSFNQAVTA 689

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  ++M+D
Sbjct: 690  TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRNMID 749

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +G D H+ TA  +Y      V+  +V  +                   RRKAK  NF
Sbjct: 750  AFLSGYDIHAATAAKIY-----KVDISEVTTDM------------------RRKAKTANF 786

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    VS +EAK+ +D ++    ++  + +   + +R + +V T+  R 
Sbjct: 787  GIIYGISVFGLAERMNVSRQEAKELIDGYFETYPQIKEYMDKSIQVARENGYVETIFHRK 846

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHD 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  +   L  K++LQVHD
Sbjct: 847  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMSLIYQRIQSNNLKAKMILQVHD 906

Query: 1074 EVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            E+    P    E+ + IV+E M + +     + V L  D    +NW  A
Sbjct: 907  ELNFSVPEAEKEIIQKIVIEEMERAY----RMLVPLKADFGWGKNWLEA 951



 Score = 46.6 bits (109), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           ++NEF P +E+ +  KV  N  +D  VL+NYG++V G   DTM    +     R    Y 
Sbjct: 424 IVNEFRPLYENENSMKVGQNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQPELRHNMDYL 483

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
            E     R +  ++        S+G   +      SM+D+                   P
Sbjct: 484 AEIYLRYRTIHIDELIG-----SRGKNQK------SMRDL-------------------P 513

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            E++ R        Y+  D+  TLKL   L+K+L + S +              + E   
Sbjct: 514 PEDVYR--------YACEDADVTLKLKNVLEKELKKQSAE------------HLFYEIEM 553

Query: 604 PFGEILVKMETEGMLVDREYLSE 626
           P   +LV +E+ G+ +D E L +
Sbjct: 554 PLVPVLVNIESNGVRIDTEALKQ 576


>gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella inopinata BO1]
 gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella inopinata BO1]
          Length = 978

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 910  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDAR 969

Query: 1115 CAQNW 1119
             A NW
Sbjct: 970  AAHNW 974



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 128/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           V A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 VLAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   + S  QL  +LFG  G P +
Sbjct: 620 --GEKFTISSPKQLGDILFGKMGLPGA 644


>gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
          Length = 994

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 710  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 770  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 807

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 808  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 865

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 866  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 925

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 926  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDAR 985

Query: 1115 CAQNW 1119
             A NW
Sbjct: 986  AAHNW 990



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 406 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 453 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 512 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 540

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660


>gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1]
          Length = 994

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 710  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 770  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 807

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 808  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 865

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 866  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 925

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 926  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDAR 985

Query: 1115 CAQNW 1119
             A NW
Sbjct: 986  AAHNW 990



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 406 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 453 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 512 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 540

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660


>gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653]
 gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653]
          Length = 978

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 910  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRHVMENAAMPAVSLAVPLRVDAR 969

Query: 1115 CAQNW 1119
             A NW
Sbjct: 970  AAHNW 974



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 126/327 (38%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           V A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 VLAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+   + G   L                           E ++G   I+ KD+ G     
Sbjct: 496 DAGTGSHGMNPLS--------------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|359404893|ref|ZP_09197700.1| DNA-directed DNA polymerase [Prevotella stercorea DSM 18206]
 gi|357559871|gb|EHJ41298.1| DNA-directed DNA polymerase [Prevotella stercorea DSM 18206]
          Length = 878

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 170/341 (49%), Gaps = 29/341 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARR 841
            Q+ R     +  + E   +  L+  ++  L    ++ + G +H + N   T TGRLS+  
Sbjct: 565  QQLRSKAPIVDHILEHRGLKKLLGTYVDALP-KLINPRTGHIHTTFNQAVTATGRLSSSN 623

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQN P   +D  +IR+ FI  PG     ADY Q+ELR++AHL+  ++M++AF+ G D 
Sbjct: 624  PNLQNIPVRGEDGKEIRKCFIPEPGQLFFSADYSQIELRVMAHLSGDENMIEAFREGYDI 683

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TA  +Y    N+V   Q                       R KAK  NF I YG T 
Sbjct: 684  HAATAARIYKEDINSVSRDQ-----------------------RTKAKRANFGIIYGITV 720

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA    +S +EAK+ ++ ++N    V  + E  K+ +R   +  T   R R  P I S
Sbjct: 721  FGLAERLDISRDEAKQLIEGYFNTFPGVHAYMEKAKETAREHGYAETFFHRRRYLPDITS 780

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPS 1081
               + RN  ER AIN P+QGSAAD+   AM+ I +  + + +  K++LQVHDE+      
Sbjct: 781  HNATVRNFAERNAINAPIQGSAADIIKIAMVRIYERFQREGIRSKMILQVHDELNFSVLP 840

Query: 1082 ESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            E  E  + IV+E M   +     L V L  D+ C +NW  A
Sbjct: 841  EEKERVEKIVIEEMQNAY----PLHVPLVADSGCGENWLEA 877


>gi|302381103|ref|ZP_07269563.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
 gi|302311150|gb|EFK93171.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
          Length = 875

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 113/349 (32%), Positives = 183/349 (52%), Gaps = 34/349 (9%)

Query: 780  ATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINT-ET 834
            +T+QE  EA     + I  +    +I  L + +I  +   ++  ++G++H +      +T
Sbjct: 556  STDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGM--VDLIKEDGKIHTTFQQTIAQT 613

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GR+S+  PNLQN P   ++   IR+AF+   GN L+ ADY Q+ELR+LA LAN + M+DA
Sbjct: 614  GRISSTNPNLQNIPIRTEEGRLIRKAFVPSEGNMLLDADYSQIELRVLADLANDEVMIDA 673

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            FK G D H +TA  ++    + V + Q                       R  AK +NF 
Sbjct: 674  FKHGADIHRKTASEVFKVDFDKVTSLQ-----------------------RSNAKAVNFG 710

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            I YG     L++D  ++ +EAK+ ++ + +  + +  + E      +   +V T++ R R
Sbjct: 711  IVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMNRRR 770

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDE 1074
              P +KS   + R+  ER A+NTP+QGSAAD+   AM++       ++L  KL+LQVHDE
Sbjct: 771  YIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLILQVHDE 830

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +I++ P +  E     V+E M        +L+VD+ +D   A NWY AK
Sbjct: 831  LIVDCPKDEREK----VLEIMKDVMTHAVDLKVDMKIDVNSADNWYDAK 875


>gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
          Length = 995

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 711  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 770

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 771  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 808

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 809  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 866

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 867  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 926

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 927  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDAR 986

Query: 1115 CAQNW 1119
             A NW
Sbjct: 987  AAHNW 991



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 407 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 453

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 454 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 512

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 513 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 541

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 542 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 580

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 581 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 636

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 637 --GEKFTIGSPKQLGDILFGKMGLPGA 661


>gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
          Length = 978

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRTHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 910  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDAR 969

Query: 1115 CAQNW 1119
             A NW
Sbjct: 970  AAHNW 974



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 126/327 (38%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+   + G   L                           E ++G   I+ KD+ G     
Sbjct: 496 DAGTGSHGMAPLS--------------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308]
 gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19]
 gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
 gi|376271967|ref|YP_005150545.1| DNA polymerase I [Brucella abortus A13334]
 gi|423167735|ref|ZP_17154438.1| DNA polymerase I [Brucella abortus bv. 1 str. NI435a]
 gi|423169889|ref|ZP_17156564.1| DNA polymerase I [Brucella abortus bv. 1 str. NI474]
 gi|423175120|ref|ZP_17161789.1| DNA polymerase I [Brucella abortus bv. 1 str. NI486]
 gi|423178029|ref|ZP_17164674.1| DNA polymerase I [Brucella abortus bv. 1 str. NI488]
 gi|423179322|ref|ZP_17165963.1| DNA polymerase I [Brucella abortus bv. 1 str. NI010]
 gi|423182452|ref|ZP_17169089.1| DNA polymerase I [Brucella abortus bv. 1 str. NI016]
 gi|423186605|ref|ZP_17173219.1| DNA polymerase I [Brucella abortus bv. 1 str. NI021]
 gi|423190957|ref|ZP_17177565.1| DNA polymerase I [Brucella abortus bv. 1 str. NI259]
 gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA
            polymerase, family A:5'-3' exonuclease:3'-5'
            exonuclease:Hel [Brucella melitensis biovar Abortus 2308]
 gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19]
 gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
 gi|363399573|gb|AEW16543.1| DNA polymerase I [Brucella abortus A13334]
 gi|374537351|gb|EHR08864.1| DNA polymerase I [Brucella abortus bv. 1 str. NI486]
 gi|374541169|gb|EHR12668.1| DNA polymerase I [Brucella abortus bv. 1 str. NI435a]
 gi|374542125|gb|EHR13614.1| DNA polymerase I [Brucella abortus bv. 1 str. NI474]
 gi|374548329|gb|EHR19780.1| DNA polymerase I [Brucella abortus bv. 1 str. NI488]
 gi|374550841|gb|EHR22276.1| DNA polymerase I [Brucella abortus bv. 1 str. NI010]
 gi|374551298|gb|EHR22732.1| DNA polymerase I [Brucella abortus bv. 1 str. NI016]
 gi|374553647|gb|EHR25061.1| DNA polymerase I [Brucella abortus bv. 1 str. NI259]
 gi|374558284|gb|EHR29678.1| DNA polymerase I [Brucella abortus bv. 1 str. NI021]
          Length = 978

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRTHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 910  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDAR 969

Query: 1115 CAQNW 1119
             A NW
Sbjct: 970  AAHNW 974



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|384210490|ref|YP_005599572.1| DNA polymerase I [Brucella melitensis M5-90]
 gi|384407595|ref|YP_005596216.1| DNA polymerase I [Brucella melitensis M28]
 gi|384444212|ref|YP_005602931.1| DNA polymerase I [Brucella melitensis NI]
 gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28]
 gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90]
 gi|349742209|gb|AEQ07752.1| DNA polymerase I [Brucella melitensis NI]
          Length = 978

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 910  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDAR 969

Query: 1115 CAQNW 1119
             A NW
Sbjct: 970  AAHNW 974



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 126/327 (38%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+   + G   L                           E ++G   I+ KD+ G     
Sbjct: 496 DAGTDSHGMDPLS--------------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2]
 gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2]
          Length = 978

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 910  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDAR 969

Query: 1115 CAQNW 1119
             A NW
Sbjct: 970  AAHNW 974



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           V A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 VLAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|387760555|ref|YP_006067532.1| DNA polymerase I [Streptococcus salivarius 57.I]
 gi|339291322|gb|AEJ52669.1| DNA polymerase I [Streptococcus salivarius 57.I]
          Length = 833

 Score =  186 bits (473), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 186/337 (55%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 528  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 585

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 586  LEQGRL-IRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 644

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 645  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 682

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 683  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRELPDINSRNFNVRN 742

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQVHDE++LE P++    
Sbjct: 743  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQVHDEIVLEVPNDELVA 800

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             KA+V E M         L V L  D    + WY AK
Sbjct: 801  MKALVKETMEAAV----ELAVPLIADENDGRTWYEAK 833


>gi|406675197|ref|ZP_11082387.1| DNA polymerase I [Aeromonas veronii AMC35]
 gi|404627967|gb|EKB24756.1| DNA polymerase I [Aeromonas veronii AMC35]
          Length = 921

 Score =  186 bits (473), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 178/358 (49%), Gaps = 37/358 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  +    L E   +  L S +   LPL    +  + GRVH 
Sbjct: 596  KGAPSTAEEVLA---ELAETYELPRLLMEHRGLAKLKSTYTDKLPLM---IKPRTGRVHT 649

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 650  SYHQAVAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHL 709

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +L AF  G D H  TA  ++    +AV T                         R
Sbjct: 710  SGDKGLLTAFAEGKDIHKATAAEVFGVALDAVTTDM-----------------------R 746

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GLA+   +   EA+K +DL+++    VL + E  ++++    +
Sbjct: 747  RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFDRYPGVLEYMERTRQQAEAQGY 806

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKELG 1064
            V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R +++  
Sbjct: 807  VETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDSWIRGIEDES 866

Query: 1065 WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
             ++L+QVHDE++ E   E  E   AI+ E MS        L V L V+A    NW  A
Sbjct: 867  IRMLMQVHDELVFEIREEKLEEYAAIIKEKMS----AAAELHVPLLVEAGTGDNWDQA 920


>gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99]
 gi|340789749|ref|YP_004755213.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99]
 gi|340558207|gb|AEK53445.1| DNA polymerase I [Brucella pinnipedialis B2/94]
          Length = 978

 Score =  186 bits (473), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 910  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDAR 969

Query: 1115 CAQNW 1119
             A NW
Sbjct: 970  AAHNW 974



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
 gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
          Length = 978

 Score =  186 bits (473), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 910  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDAR 969

Query: 1115 CAQNW 1119
             A NW
Sbjct: 970  AAHNW 974



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLVQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840]
 gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840]
          Length = 978

 Score =  186 bits (473), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 910  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDAR 969

Query: 1115 CAQNW 1119
             A NW
Sbjct: 970  AAHNW 974



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 496 DAG---TGRHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330]
 gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
 gi|376275103|ref|YP_005115542.1| DNA polymerase I [Brucella canis HSK A52141]
 gi|376279825|ref|YP_005153831.1| DNA polymerase I [Brucella suis VBI22]
 gi|384223819|ref|YP_005614983.1| DNA polymerase I [Brucella suis 1330]
 gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330]
 gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
 gi|343381999|gb|AEM17491.1| DNA polymerase I [Brucella suis 1330]
 gi|358257424|gb|AEU05159.1| DNA polymerase I [Brucella suis VBI22]
 gi|363403670|gb|AEW13965.1| DNA polymerase I [Brucella canis HSK A52141]
          Length = 979

 Score =  186 bits (473), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 695  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 754

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 755  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 792

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 793  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 850

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 851  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 910

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 911  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDAR 970

Query: 1115 CAQNW 1119
             A NW
Sbjct: 971  AAHNW 975



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 391 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 437

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 438 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 496

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 497 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 525

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 526 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 564

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 565 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 620

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 621 --GEKFTIGSPKQLGDILFGKMGLPGA 645


>gi|406658765|ref|ZP_11066905.1| DNA-directed DNA polymerase I [Streptococcus iniae 9117]
 gi|405578980|gb|EKB53094.1| DNA-directed DNA polymerase I [Streptococcus iniae 9117]
          Length = 880

 Score =  186 bits (473), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 182/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMSDGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF A    SL+++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 621  SSDPNLQNIPVRLEQGRL-IRKAFTASKEGSLLLSSDYSQIELRVLAHISGDQHLIAAFN 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
               D H+ TAM ++                 G  KP     +D  A++RR AK +NF I 
Sbjct: 680  EDADIHTSTAMRVF-----------------GIAKP-----EDVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S ++AK  +D ++ +   + ++ +   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGISRKQAKDYIDTYFQQYPGIKSYMDTVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K     +   ++LLQVHDE++
Sbjct: 778  PEINSRNFNIRSFAERTAINSPIQGSAADILKIAMINLDKALADGQFESRMLLQVHDEIV 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P       KA+V E M         L V L  D    Q+WY AK
Sbjct: 838  LEVPEAELPAIKALVKETMEAAV----ALSVPLRADENAGQSWYEAK 880


>gi|228477065|ref|ZP_04061703.1| DNA polymerase I [Streptococcus salivarius SK126]
 gi|228251084|gb|EEK10255.1| DNA polymerase I [Streptococcus salivarius SK126]
          Length = 879

 Score =  186 bits (473), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 186/337 (55%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H     + T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQVHDE++LE P++    
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQVHDEIVLEVPNDELVA 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             KA+V E M         L V L  D    + WY AK
Sbjct: 847  MKALVKETMEAAV----ELAVPLIADENDGRTWYEAK 879


>gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445]
 gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445]
          Length = 978

 Score =  186 bits (473), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 910  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDAR 969

Query: 1115 CAQNW 1119
             A NW
Sbjct: 970  AAHNW 974



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 130/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q      GE++ FS+   P      GK+  +V         DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------GELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3]
          Length = 925

 Score =  186 bits (473), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 118/317 (37%), Positives = 164/317 (51%), Gaps = 34/317 (10%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 637  LPSYILP--------KTGRVHTNYSLATTSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIA 688

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G  L+ ADY Q+ELR+LAH A+  ++ +AF  G D H+ TA  M+     AVE     
Sbjct: 689  SKGYLLLSADYSQIELRVLAHFADITALKEAFAQGQDIHAMTAAQMFG---VAVE----- 740

Query: 924  LEWHGEDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLW 982
                              +SE RR+AK +NF I YG +P GLA    +S +EA   + L+
Sbjct: 741  ----------------GMSSEIRRRAKAINFGIIYGISPFGLANQLGISRKEASHYIQLY 784

Query: 983  YNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGS 1042
            +     +  + E  K  +R   +V T+ GR    P IK++    R   ERAAIN P+QGS
Sbjct: 785  FERFPGIKDYMEKTKMFARHHGYVETIFGRRIHCPEIKAVNPQVRAFNERAAINAPIQGS 844

Query: 1043 AADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGK 1102
            AAD+   AM+++      ++L  K+LLQVHDE+I E P   +     +V + M       
Sbjct: 845  AADIIRRAMIQMENALEKEKLSAKMLLQVHDELIFEVPKSESTKTAILVRKVMENATMPA 904

Query: 1103 NNLRVDLSVDAKCAQNW 1119
             +L V L V    AQNW
Sbjct: 905  LSLSVPLEVKVITAQNW 921



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 133/317 (41%), Gaps = 79/317 (24%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
           L    P  E+ +I K+  N  +D  V++ Y + +  F  DTM ++            Y+L
Sbjct: 396 LALLKPILENQAILKIGQNIKYDWLVMKQYNIVMRSFD-DTMLLS------------YAL 442

Query: 485 EA--LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
           EA   T    ++SE    ++               I+ KD      L  +G   K+++ A
Sbjct: 443 EAGISTHGMDILSERWLGHKS--------------ITYKD------LTYNGR--KVNSFA 480

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
            ++  Q         Y+A D+  TL+L++ LK +L+             + M   Y+   
Sbjct: 481 QIDLKQAT------LYAAEDADITLRLWQVLKPQLV------------AQRMTKIYERLD 522

Query: 603 QPFGEILVKMETEGMLVDREYLSEIE-KVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
           +P  EIL +ME  G+LVDR+ LS +  ++A+A        ++    K        N+ S 
Sbjct: 523 RPLIEILARMEERGILVDRQILSRLSGELAQAALNLEEEIYQLVGEK-------FNIASP 575

Query: 662 TQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSK---FRNIT-L 712
            QL  +LFG     G   +K+   S   + +      E + AEG   P K   +R +T L
Sbjct: 576 KQLGDILFGKIGLPGGSKTKNGQWSTSAQTL------EELAAEGHILPRKIVNWRQLTKL 629

Query: 713 RSIGVD-LPTEMYTATG 728
           +S   D LP+ +   TG
Sbjct: 630 KSTYTDALPSYILPKTG 646


>gi|418028173|ref|ZP_12666755.1| DNA-directed DNA polymerase [Streptococcus thermophilus CNCM I-1630]
 gi|354687973|gb|EHE88024.1| DNA-directed DNA polymerase [Streptococcus thermophilus CNCM I-1630]
          Length = 879

 Score =  186 bits (473), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 186/337 (55%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKNKGYVSTLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQVHDE++LE P++    
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQVHDEIVLEVPNDELVA 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             KA+V E M         L V L  D    + WY AK
Sbjct: 847  MKALVKETMEAAV----ELAVPLIADENDGRTWYEAK 879


>gi|296132483|ref|YP_003639730.1| DNA polymerase I [Thermincola potens JR]
 gi|296031061|gb|ADG81829.1| DNA polymerase I [Thermincola potens JR]
          Length = 886

 Score =  186 bits (473), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 131/411 (31%), Positives = 202/411 (49%), Gaps = 39/411 (9%)

Query: 712  LRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGA 771
            L ++ VDL TE+        + GD  +      +       G    +  G     + K  
Sbjct: 506  LEAMSVDLSTEI------DRITGDIYRLAGEEFNINSTRQLGTILFEKLGLPVIKKTKTG 559

Query: 772  VASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN 831
             +++ ++  T  E  E    +    ++  + S   + ++PL    ++   G+VH + N  
Sbjct: 560  YSTDVEVLETLAERHEIVARVLHYRQLVKLKSTYVDGLIPL----INPVTGKVHTTFNQT 615

Query: 832  -TETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCK 889
             T TGRLS+  PNLQN P   ++  +IR+AF+ + PG  ++ ADY Q+ELRILAHL+  +
Sbjct: 616  VTATGRLSSTEPNLQNIPIRMEEGRRIRKAFVPSEPGWIILSADYSQIELRILAHLSGDE 675

Query: 890  SMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAK 949
              + AF+   D H+RTA  ++         G  L E  GE               R +AK
Sbjct: 676  RFVQAFRNDEDIHTRTAAEVF---------GVSLEEVTGE--------------MRSRAK 712

Query: 950  MLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTL 1009
             +NF I YG +  GLA++  VS +EA++ ++ ++     +  + E   + +R   +V TL
Sbjct: 713  AVNFGIVYGISDFGLAKNISVSRKEARQYIENYFARYAGIKKYLEETVRLAREQGYVTTL 772

Query: 1010 LGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLL 1069
            L R R  P I S  R+ R+  ER A+NTP+QGSAAD+   AM+ ++   + + L  ++LL
Sbjct: 773  LNRRRYLPDILSPNRNIRSFGERTAMNTPIQGSAADIIKLAMVRVADCLKKEGLKARMLL 832

Query: 1070 QVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
            QVHDE+I E P E       IV ECM         L V L VD K   NWY
Sbjct: 833  QVHDELIFEAPPEELPKVTGIVRECMENTV----KLTVPLKVDMKKGFNWY 879


>gi|418018635|ref|ZP_12658191.1| DNA polymerase I [Streptococcus salivarius M18]
 gi|345527484|gb|EGX30795.1| DNA polymerase I [Streptococcus salivarius M18]
          Length = 879

 Score =  186 bits (473), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 185/337 (54%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +   +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYILG--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQVHDE++LE P++    
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQVHDEIVLEVPNDELVA 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             KA+V E M         L V L  D    + WY AK
Sbjct: 847  MKALVKETMEAAV----ELAVPLIADENDGRTWYEAK 879


>gi|320547600|ref|ZP_08041885.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812]
 gi|320447675|gb|EFW88433.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812]
          Length = 878

 Score =  186 bits (473), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 178/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ  +   K+G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VSKILEYRQIAKLQSTYIVGLQ--DFILKDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    + ++++ DY Q+ELR+LAH++N + ++ AF  G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPETADEVLLSSDYSQIELRVLAHISNDEHLIAAFNEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GLA + 
Sbjct: 690  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDYGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +  + AK+ ++ ++     +  + E   ++++   +V TL  R R  P I +   + R 
Sbjct: 728  GIPRKVAKQYIETYFERYPGIKDYMERVVRDAKDKGYVETLFHRRRELPDINARNFNVRQ 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + K     +   K+LLQVHDE+ILE P +  E  +
Sbjct: 788  FAERTAINSPIQGSAADILKIAMINLDKALVEGKFKTKMLLQVHDEIILEVPKDELEAIE 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADESAGQTWYEAK 878


>gi|414156626|ref|ZP_11412927.1| DNA polymerase I [Streptococcus sp. F0442]
 gi|410869619|gb|EKS17579.1| DNA polymerase I [Streptococcus sp. F0442]
          Length = 894

 Score =  186 bits (473), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 181/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I S I  +  I  +Q + V G      ++G++H   +   T+TGRLS
Sbjct: 575  AVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRYVQDLTQTGRLS 634

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + ++DAFK
Sbjct: 635  SVDPNLQNIPVRLEQGRL-IRKAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFK 693

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                   +KP     +D   ++RR AK +NF + 
Sbjct: 694  HGADIHTSTAMRVF-----------------NIEKP-----EDVTPNDRRNAKAVNFGVV 731

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  ++ ++     +  + E   +E+R   +V TL  R R  
Sbjct: 732  YGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREI 791

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         K+LLQVHDE++
Sbjct: 792  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALERGAYKTKMLLQVHDEIV 851

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            L+ PSE     K +V E M         L V L  D    + WY AK
Sbjct: 852  LQVPSEELAAIKELVKETMESAI----ELAVPLEADENEGKTWYEAK 894


>gi|421453198|ref|ZP_15902554.1| DNA polymerase I [Streptococcus salivarius K12]
 gi|400181507|gb|EJO15774.1| DNA polymerase I [Streptococcus salivarius K12]
          Length = 898

 Score =  186 bits (473), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 186/337 (55%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H     + T+TGRLS+  PNLQN P  
Sbjct: 593  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 650

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 651  LEQGRL-IRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 709

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 710  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 747

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 748  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRELPDINSRNFNVRN 807

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQVHDE++LE P++    
Sbjct: 808  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQVHDEIVLEVPNDELVA 865

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             KA+V E M         L V L  D    + WY AK
Sbjct: 866  MKALVKETMEAAV----ELAVPLIADENDGRTWYEAK 898


>gi|170749936|ref|YP_001756196.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
 gi|170656458|gb|ACB25513.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
          Length = 1060

 Score =  186 bits (473), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 160/304 (52%), Gaps = 24/304 (7%)

Query: 820  KNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            +  RVH S ++  T TGRLS+  PNLQN P   ++  +IR+AF+A PGN LI ADY Q+E
Sbjct: 779  ETARVHTSFSLAATTTGRLSSSEPNLQNIPIRTEEGRRIRRAFVAAPGNRLISADYSQIE 838

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+A+   +  AF+ G D H+ TA  M+                       VPL K
Sbjct: 839  LRLLAHMADIPELRKAFEDGIDIHAATASAMFG----------------------VPL-K 875

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            +     RR+AK +NF I YG +  GLA    +  EEA   +  ++ +   +  + E  KK
Sbjct: 876  EMTPDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFEQFPGIRDYIETTKK 935

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
              R   +V TL GR   +P I+S   S+R  +ER AIN P+QGSAAD+   AM  +    
Sbjct: 936  SCRDKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGSAADIIRRAMTRMEAAL 995

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              K+L  ++LLQVHDE++ E   +  E    I+   M +       L+V L V+A  A N
Sbjct: 996  AAKKLNARMLLQVHDELVFEVAEDEVERTIPIIRGVMEEAPAPALTLKVPLVVEANAAGN 1055

Query: 1119 WYSA 1122
            W  A
Sbjct: 1056 WQEA 1059


>gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
 gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
          Length = 940

 Score =  186 bits (473), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/308 (36%), Positives = 164/308 (53%), Gaps = 24/308 (7%)

Query: 816  NVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
            ++  K GRVH S ++ +T TGRLS+  PNLQN P   +D  KIR+AFI   GN LI ADY
Sbjct: 655  SIHPKTGRVHTSFSLASTTTGRLSSNDPNLQNIPIRTEDGRKIREAFIPEDGNVLISADY 714

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A    +++AF  G D H+ TA  ++                       V
Sbjct: 715  SQIELRLLAHIAEIGPLIEAFHQGLDIHAMTAAEVFG----------------------V 752

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            PL +    S RR+AK +NF I YG +  GLAR+  +  +EA   +  ++     +  + +
Sbjct: 753  PL-EGMDPSIRRQAKAINFGIIYGISAFGLARNLGIGRDEASLFIKRYFERFPGIKAYMD 811

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               + +R+  +V TL GR    P IK+   + R   ER AIN P+QGSAAD+   AM+ +
Sbjct: 812  ETIEGARVHGYVETLFGRRSHTPNIKAKQPNIRMGAERQAINAPIQGSAADIVKRAMIRV 871

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                    L  K+LLQVHDE+++E P++ A+   A++ + M        +L V L V+A 
Sbjct: 872  PAALAAHRLSAKMLLQVHDELVVECPADQADETAAVLKDVMEGAAGPALSLSVPLVVEAG 931

Query: 1115 CAQNWYSA 1122
               +W  A
Sbjct: 932  QGASWEQA 939


>gi|312135240|ref|YP_004002578.1| DNA polymerase i [Caldicellulosiruptor owensensis OL]
 gi|311775291|gb|ADQ04778.1| DNA polymerase I [Caldicellulosiruptor owensensis OL]
          Length = 850

 Score =  186 bits (473), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 169/313 (53%), Gaps = 30/313 (9%)

Query: 812  LQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
            LQ  N S   GRVH + +   T TGRL++  PNLQN P    +   IR+ FI   G+ LI
Sbjct: 567  LQAINPSS--GRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGRLIRKVFIPEEGHVLI 624

Query: 871  VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
             ADY Q+ELRILAH++  + +++AFK   D HS+TA  ++                 G D
Sbjct: 625  DADYSQIELRILAHISEDERLINAFKNNVDIHSQTAAEIF-----------------GVD 667

Query: 931  KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVL 990
                  + D     R +AK +NF I YG +  GLARD K+S +EA + ++ ++    +V 
Sbjct: 668  ------IDDVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPKVK 721

Query: 991  TWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCA 1050
             + +   K +R + +V TL  R R    I S  R+ R++ ER A+N+P+QGSAAD+   A
Sbjct: 722  EYLDNIVKFARENGYVLTLFNRKRYIKDINSTNRNTRSYAERIAMNSPIQGSAADIMKLA 781

Query: 1051 MLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLS 1110
            M+++ +  +   L  K++LQVHDE+++E P E  ++ K IV   M         L+V L 
Sbjct: 782  MIKVYQKLKENNLKAKIILQVHDELLIEAPYEEKDIVKRIVKTEMENAV----ALKVPLV 837

Query: 1111 VDAKCAQNWYSAK 1123
            V+ K   NWY  K
Sbjct: 838  VEVKEGLNWYETK 850


>gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
 gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
          Length = 980

 Score =  186 bits (473), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 157/302 (51%), Gaps = 26/302 (8%)

Query: 823  RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  +  T TGRLS+  PN+QN P    +  KIR AF+A PGN LI ADY Q+ELR+
Sbjct: 702  RVHTSFAMAATTTGRLSSSDPNIQNIPVRTAEGRKIRTAFVAEPGNVLISADYSQIELRV 761

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+AN   +  AF  G D H+ TA  M+                       VP+  +  
Sbjct: 762  LAHVANIPQLTQAFADGVDIHAMTASEMFG----------------------VPI--EGM 797

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + +A K E+
Sbjct: 798  PSEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIRKYFERFPGIKDYMDATKAEA 857

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            + + +V T+ GR   +P I+S     R   ERAAIN P+QGSAAD+   AM+ +      
Sbjct: 858  KENGYVTTIFGRRAHYPEIRSSNPQVRAFNERAAINAPIQGSAADIIRRAMVRMEPALEA 917

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
              +  ++LLQVHDE+I E     A+    ++VE M        ++ V L VDA+ A+NW 
Sbjct: 918  AGMQARMLLQVHDELIFETAEADADKIIPVIVEVMENAAMPAIDMAVPLQVDARAAKNWD 977

Query: 1121 SA 1122
             A
Sbjct: 978  QA 979



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 112/264 (42%), Gaps = 69/264 (26%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           R  L+E     E+P++ K+  N  +D  V+  + +++  F  DTM ++ + D+    +GG
Sbjct: 448 RAALDELKALLEEPAVLKIGQNLKYDMLVMAQHNIEIKSFD-DTMLLSYVLDAG---QGG 503

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++AL+                       E ++G   I  KD+ G  K     SA   +
Sbjct: 504 HGMDALS-----------------------ERWLGHKTIGYKDVTGSGK-----SAIPFA 535

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
            +A          +   +Y+A D+  TL+L+ +LK +L+             + M   Y+
Sbjct: 536 QVA---------IDKATAYAAEDAEVTLRLWHALKVRLVS------------EGMTSVYE 574

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   +L++ME  G+ VDR+ LS +         A     ++ A ++       NVG
Sbjct: 575 RLERPLAPVLMRMEQRGIRVDRQILSRLSGELAQGAAALEAEIQELAGEN------FNVG 628

Query: 660 SDTQLRQLLFGGKPNSKDDSESLP 683
           S  QL ++LF        D  SLP
Sbjct: 629 SPKQLGEILF--------DKMSLP 644


>gi|440225073|ref|YP_007332164.1| DNA-directed RNA polymerase I [Rhizobium tropici CIAT 899]
 gi|440036584|gb|AGB69618.1| DNA-directed RNA polymerase I [Rhizobium tropici CIAT 899]
          Length = 1010

 Score =  186 bits (473), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/309 (37%), Positives = 160/309 (51%), Gaps = 28/309 (9%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S V  +  RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ AD
Sbjct: 722  SYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLVSAD 781

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+A+   +  AF+ G D H+ TA  M+                       
Sbjct: 782  YSQIELRVLAHVADIPQLKQAFEDGIDIHAMTASEMF----------------------G 819

Query: 934  VPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
            VP+  D   SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  +
Sbjct: 820  VPV--DGMPSEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDY 877

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             E  K+ +R   +V T+ GR   FP I+S   S R   ERA+IN P+QGSAADV   AM+
Sbjct: 878  MEGAKQAARDKGYVETIFGRRIHFPEIRSSNPSVRAFNERASINAPIQGSAADVIRRAMI 937

Query: 1053 EISKNARLKELG--WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLS 1110
            ++        LG   ++LLQVHDE+I E      E    I+V  M        ++ V L 
Sbjct: 938  KMEPALTAAGLGDRVRMLLQVHDELIFEVEDADVERTTPIIVSVMENAAMPAVDMAVPLR 997

Query: 1111 VDAKCAQNW 1119
            VDA+ A NW
Sbjct: 998  VDARAAHNW 1006



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 147/370 (39%), Gaps = 93/370 (25%)

Query: 327 NSEKLEILRSKLASF------YSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKID 380
            +E  ++ +++ ASF      +S  + + +++   +  W+   +   +V A DTE   +D
Sbjct: 365 TTEPEDLAKARAASFASAPIDHSKYVTIRDIATLDR--WIADARETGIV-AFDTETTSLD 421

Query: 381 VKQETPVDHGEVICFSIYSGPEADFGNGKS--CIWVDLLDGGG----------------R 422
           V Q       E++ FS+      +  +G S    +V L    G                R
Sbjct: 422 VMQ------AEIVGFSLAIADNRNDPSGSSIRAAYVPLAHKTGIGDLLGGGLADNQIPLR 475

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           D L       ED SI K+  N  +D  +++ YG++   F  DTM ++ + D       G 
Sbjct: 476 DALARLKDLLEDASILKIAQNLKYDYLLMKRYGIETRSFD-DTMLLSYVLDGGANATHG- 533

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIST 540
            +++L+                       E ++G   I+ KD+ G         +GK + 
Sbjct: 534 -MDSLS-----------------------ERWLGHKPIAYKDVAG---------SGKSNV 560

Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
              + ++ R       +Y+A D+  TL+L+  LK +L              + +   Y+ 
Sbjct: 561 TFDLVDIDRAT-----AYAAEDADVTLRLWLVLKPRL------------AAEKLSVVYER 603

Query: 601 YWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
             +P   +L  ME  G+ +DR+ LS +       Q AA      +   H    ++ N+GS
Sbjct: 604 LERPLVPVLAHMEERGITIDRQILSRLS--GELAQGAAALEDEIY---HLAGERF-NIGS 657

Query: 661 DTQLRQLLFG 670
             QL  +LFG
Sbjct: 658 PKQLGDILFG 667


>gi|295425309|ref|ZP_06818012.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM 11664]
 gi|295065085|gb|EFG55990.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM 11664]
          Length = 887

 Score =  186 bits (473), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 115/334 (34%), Positives = 176/334 (52%), Gaps = 30/334 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            +S + +   I  + S ++  L   +V   +GRVH   L   T TGRLS+  PNLQN P  
Sbjct: 582  VSEILDYRQIAKIQSTYVKGLL--DVIQPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTR 639

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AF+ + P   +   DY Q+ELR+LAH++  ++M +AFK G D HS TAM +
Sbjct: 640  TEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKI 699

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            + H+                D P     KD     RR AK +NF I YG +  GL+++  
Sbjct: 700  F-HL----------------DSP-----KDVTPLMRRHAKAVNFGIVYGISDYGLSKNLG 737

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            +S + AK+ +D ++ +  ++  + +   +E+R   +  T++ R R  P I +   + R+ 
Sbjct: 738  ISRKRAKEFIDNYFEQYPQIRDYMDKAVQEAREKGYAETIMHRRRYLPDIHAKNFNVRSF 797

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER AIN+P+QGSAAD+   AM+ + K      L  K++LQVHDE+I + P +  E  K 
Sbjct: 798  AERTAINSPIQGSAADIIKIAMINMQKKLEEMHLKTKMVLQVHDELIFDVPKDELETVKK 857

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            IV E M         L V L  D+    NWY AK
Sbjct: 858  IVPEVMQSAV----RLDVPLIADSGWGHNWYDAK 887


>gi|315122837|ref|YP_004063326.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496239|gb|ADR52838.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 727

 Score =  186 bits (472), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 161/306 (52%), Gaps = 24/306 (7%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            ++++ +  RVH   ++ +T TGRL++  PNLQN P       KIR+AFIA P   LI AD
Sbjct: 441  NHINQRTQRVHTFYSLASTMTGRLASLEPNLQNIPVKTNLGKKIRRAFIAPPTKKLISAD 500

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELRILAH+A    +  AFK   D H+  A  ++      V+  +V           
Sbjct: 501  YSQIELRILAHVAQINPLYQAFKNSLDIHTLVASEIF-----GVKIEEV----------- 544

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                    +  R+ AK +NFSI YG +P  LA   K+   EA   +  +++    +  + 
Sbjct: 545  -------SSHMRQHAKTINFSIIYGISPFRLANQLKIKRSEATDYIQRYFDRFPGIHEYI 597

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K  +R +++V T+ GR   +  I S   S RN  ERAAIN P+QGSAAD+   AM+ 
Sbjct: 598  EKTKNFARKNSYVETIFGRRIYYDEINSPKVSIRNLNERAAINAPIQGSAADITRRAMIL 657

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            + K+    +L  K+LLQ+HDE++ E P E  E    I+ E M      K NLRV L VD 
Sbjct: 658  VHKSIECHKLSTKMLLQIHDELVFEAPEEEIEQVTNIITESMENACLPKINLRVPLKVDI 717

Query: 1114 KCAQNW 1119
            K + NW
Sbjct: 718  KVSDNW 723


>gi|222084398|ref|YP_002542927.1| DNA polymerase I [Agrobacterium radiobacter K84]
 gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
          Length = 1000

 Score =  186 bits (472), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 158/304 (51%), Gaps = 28/304 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 720  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 779

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+AN   +  AF  G D H+ TA  M+                       VP+  +  
Sbjct: 780  LAHVANIPQLEQAFADGVDIHAMTASEMF----------------------GVPI--EGM 815

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+ K  +
Sbjct: 816  PSEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMESTKATA 875

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R   +V T+ GR   FP I+S   S R   ERA+IN P+QGSAADV   AM+++      
Sbjct: 876  RDKGYVETIFGRRVHFPEIRSSNPSVRAFNERASINAPIQGSAADVIRRAMIKMEPALAD 935

Query: 1061 KELG--WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              LG   ++LLQVHDE+I E      E +  ++V  M        N+ V L VDA+ A N
Sbjct: 936  AGLGDRVRMLLQVHDELIFEVEDADVERSTPVIVSVMENAAMPAVNMSVPLKVDARAANN 995

Query: 1119 WYSA 1122
            W  A
Sbjct: 996  WDEA 999



 Score = 56.6 bits (135), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 145/369 (39%), Gaps = 93/369 (25%)

Query: 328 SEKLEILRSKLASF------YSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
           +E  ++ +++ ASF      +S  + + +V    +  W+   +   +V A DTE   +DV
Sbjct: 356 TEPADLTKARAASFATAPIDHSKYVTIRDVGTLDR--WIADARETGIV-AFDTETTSLDV 412

Query: 382 KQETPVDHGEVICFSIYSGPEADFGNGKS--CIWVDLLDGGG----------------RD 423
            Q       E++ FS+      +  +G S    +V L    G                RD
Sbjct: 413 MQ------AEIVGFSLAIADNKNDPSGASIRAAYVPLNHKNGVGDLLGGGLADNQIPLRD 466

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
            L       ED S+ K+  N  +D  +++ YG++  GF  DTM ++ + D       G  
Sbjct: 467 ALPRLKALLEDTSVLKIAQNLKYDYLLMKRYGIETKGFD-DTMLLSYVLDGGANATHG-- 523

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKISTI 541
           +++L+                       E ++G   I+ KD+ G         +GK +  
Sbjct: 524 MDSLS-----------------------ERWLGHKPIAYKDVAG---------SGKSNIT 551

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
             + ++ R       +Y+A D+  TL+L+  LK +L              + +   Y+  
Sbjct: 552 FDLVDIDRAT-----AYAAEDADVTLRLWLVLKPRL------------AAEKLATVYERL 594

Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            +P   +L  ME  G+ +DR+ LS      R   E A    R     +    +  N+GS 
Sbjct: 595 ERPLVPVLAHMEERGITIDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIGSP 648

Query: 662 TQLRQLLFG 670
            QL  +LFG
Sbjct: 649 KQLGDILFG 657


>gi|408377147|ref|ZP_11174750.1| DNA polymerase I [Agrobacterium albertimagni AOL15]
 gi|407749106|gb|EKF60619.1| DNA polymerase I [Agrobacterium albertimagni AOL15]
          Length = 991

 Score =  186 bits (472), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 114/301 (37%), Positives = 159/301 (52%), Gaps = 28/301 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH   ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ ADY Q+ELR+
Sbjct: 711  RVHTGYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRV 770

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+                       VP+  +  
Sbjct: 771  LAHVADIPQLRQAFADGIDIHAMTASEMF----------------------GVPV--EGM 806

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+ K  +
Sbjct: 807  PSEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIKDYMESTKAFA 866

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R   +V T+ GR   +P IKS   S R   ERAAIN P+QGSAADV   AM++I      
Sbjct: 867  REHGYVETIFGRRAYYPDIKSSNPSMRAFNERAAINAPIQGSAADVIRRAMIQIEPALAA 926

Query: 1061 KELG--WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              L    ++LLQVHDE+I E   E+ + A  ++V+ M        ++RV L VDA+ A N
Sbjct: 927  AGLSERCRMLLQVHDELIFEVEDEAVDAAMPVIVDIMENAAMPAVSMRVPLKVDARAAHN 986

Query: 1119 W 1119
            W
Sbjct: 987  W 987



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 132/326 (40%), Gaps = 72/326 (22%)

Query: 358 VWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNG------KSC 411
           +W+   +   LV A DTE   +D  Q   V     I  ++ S    D          K+ 
Sbjct: 382 LWIAAARETGLV-AFDTETTSLDPMQAELVGVSLAIQDNVLSPGSTDIRAAYIPLAHKTG 440

Query: 412 IWVDLLDGGG-------RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHAD 464
           I  DLL GG        ++ L       EDPS+ KV  N  +D  V++ +G+ +  F  D
Sbjct: 441 IG-DLLGGGHAEGQIPMKEALAALKDLLEDPSVLKVAQNLKYDYLVMKRHGVMLQSFD-D 498

Query: 465 TMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIF 524
           TM M+ + D+ +   G + ++AL+               D   G+T       I+ KD+ 
Sbjct: 499 TMLMSYVLDAGK---GNHGMDALS---------------DKWLGHT------PIAYKDVA 534

Query: 525 GRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKL 584
           G         +GK S    + ++ R       +Y+A D+  T++L+  LK +L       
Sbjct: 535 G---------SGKSSVTFDLVDIDRA-----TAYAAEDADVTMRLWMVLKPRL------- 573

Query: 585 DGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRK 644
                  + +   Y+   +P   +L  ME  G+ VDR+ LS +      +  A  +   +
Sbjct: 574 -----AAEGLTRIYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAAATEDEVYE 628

Query: 645 WASKHCPDAKYMNVGSDTQLRQLLFG 670
            A +        N+GS  QL  +LFG
Sbjct: 629 LAGER------FNIGSPKQLGDILFG 648


>gi|239828008|ref|YP_002950632.1| DNA polymerase I [Geobacillus sp. WCH70]
 gi|239808301|gb|ACS25366.1| DNA polymerase I [Geobacillus sp. WCH70]
          Length = 878

 Score =  186 bits (472), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 169/309 (54%), Gaps = 29/309 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            V     +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+ + P   +  ADY
Sbjct: 597  VHHDTNKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSEPDWVIFSADY 656

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+AN ++++DAF+   D H++TAM+++                H  +    
Sbjct: 657  SQIELRVLAHIANDENLIDAFRHDLDIHTKTAMDIF----------------HVNEDEVT 700

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            P       + RR+AK +NF I YG +  GL+++  ++ +EA + +  ++     V  + +
Sbjct: 701  P-------NMRRQAKAVNFGIVYGISDYGLSQNLNITRKEASEFIKRYFEIFPGVKQYMK 753

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 754  DIVQEAKQKGYVTTLLHRRRYLPDITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDL 813

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
            S   + + +  ++LLQVHDE+ILE P E  E  + IV E M         LRV L VD  
Sbjct: 814  SNRLKKENMKARMLLQVHDELILEAPKEEVERLQQIVPEVMENAV----QLRVPLKVDYH 869

Query: 1115 CAQNWYSAK 1123
                WY AK
Sbjct: 870  FGPTWYDAK 878


>gi|392379948|ref|YP_004987106.1| DNA polymerase I (POL I) [Azospirillum brasilense Sp245]
 gi|356882315|emb|CCD03321.1| DNA polymerase I (POL I) [Azospirillum brasilense Sp245]
          Length = 955

 Score =  186 bits (472), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 120/316 (37%), Positives = 164/316 (51%), Gaps = 36/316 (11%)

Query: 812  LQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
            LQ   V G   RVH +  +  T TGRLS+  PNLQN P   ++  KIR+AF+A PG+ LI
Sbjct: 670  LQAQIVEGSE-RVHTAFAMAATNTGRLSSTDPNLQNIPVRTEEGRKIRRAFVAAPGHKLI 728

Query: 871  VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
              DY Q+ELR++A +A+  ++  AF+ G D H+ TA  ++                    
Sbjct: 729  SIDYSQIELRLVAEMADIAALKQAFQDGIDIHAATASQVFG------------------- 769

Query: 931  KPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEV 989
               VPL  D   SE RRKAK +NF I YG +  GL R   ++  EA   +  ++    E+
Sbjct: 770  ---VPL--DQMTSEIRRKAKAINFGIIYGISGFGLGRQLGIAPGEANAFIKAYFERFHEL 824

Query: 990  LTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMC 1049
              W EA K  +R + HV TL GR    P I     ++R   ER AIN P+QG+AAD+   
Sbjct: 825  KLWMEATKAFARQNGHVVTLFGRRCYIPGIHDKNAARRAFAERQAINAPIQGTAADIMKR 884

Query: 1050 AMLEISKNARLKELGW---KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLR 1106
            AM  +     LKE G+   ++LLQVHDE++ E P + AE A A+V + M     G   L 
Sbjct: 885  AMARVP--GALKEAGFDEVRMLLQVHDELLFEAPEDQAERAAALVRQVM----EGAATLG 938

Query: 1107 VDLSVDAKCAQNWYSA 1122
            V L  +A    NW  A
Sbjct: 939  VPLVAEAGIGGNWDEA 954



 Score = 60.1 bits (144), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 98/247 (39%), Gaps = 57/247 (23%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           D L       EDP+I K+ HN+ FD+ +   +G++VS    D+M ++ + +      G  
Sbjct: 427 DALKALKEVLEDPAILKIGHNFKFDHQLFARHGVRVSPVD-DSMLISYVLEGGAHGHGMD 485

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
            L  L      ++     Y++    G            +  F R  L K           
Sbjct: 486 ELAELH-----LAHTTIPYKEVCGTGKN----------QITFDRVPLDK----------- 519

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
                        ++Y+A D+  TL+L+++LK +L++            + M   Y+   
Sbjct: 520 ------------ALAYAAEDADITLRLWRALKPRLVD------------ERMVTVYETLE 555

Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
           +P   ++  ME+ G+ VDR  L      AR  Q+ AV         H    +  N+GS  
Sbjct: 556 RPLVPVIADMESCGIRVDRAAL------ARLSQDLAVRMAEIEKEVHQHAGRSFNIGSPK 609

Query: 663 QLRQLLF 669
           QL ++LF
Sbjct: 610 QLGEILF 616


>gi|38146971|gb|AAR11870.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  186 bits (472), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 170/308 (55%), Gaps = 28/308 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++   GR+H + +   T TGRL++  PNLQN P    +   IR+AF+   G  LI ADY 
Sbjct: 569  INPATGRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYVLIDADYS 628

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRILAH++  + +++AFK   D HS+TA  ++      V+  QV            P
Sbjct: 629  QIELRILAHISEDERLINAFKNNLDIHSQTAAEIF-----GVDISQV-----------TP 672

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            ++       R +AK +NF I YG +  GL+RD K+S +EA + ++ ++ +  +V  + + 
Sbjct: 673  IM-------RSQAKAVNFGIVYGISDYGLSRDIKISRKEAAEFINRYFEKYPKVKEYLDN 725

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              K +R +  V T+  R R    IKS  ++ RN+ ER A+N+P+QGSAAD+   AM+ + 
Sbjct: 726  VVKFARENGFVLTIFNRKRYIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAMIRVY 785

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
            K  +   L  +++LQVHDE+++E P E  E+ K IV   M         L+V L V+ K 
Sbjct: 786  KKLKENNLKSRIILQVHDELLIESPYEEKEIVKEIVKSEMENAV----LLKVPLVVEVKE 841

Query: 1116 AQNWYSAK 1123
              NWY  K
Sbjct: 842  GSNWYETK 849


>gi|398382219|ref|ZP_10540316.1| DNA polymerase I [Rhizobium sp. AP16]
 gi|397717910|gb|EJK78507.1| DNA polymerase I [Rhizobium sp. AP16]
          Length = 1000

 Score =  186 bits (472), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 157/301 (52%), Gaps = 28/301 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 720  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 779

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+AN   +  AF  G D H+ TA  M+                       VP+  +  
Sbjct: 780  LAHVANIPQLEQAFADGVDIHAMTASEMF----------------------GVPI--EGM 815

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+ K  +
Sbjct: 816  PSEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMESTKATA 875

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R   +V T+ GR   FP I+S   S R   ERA+IN P+QGSAADV   AM+++      
Sbjct: 876  RDKGYVETIFGRRVHFPEIRSSNPSVRAFNERASINAPIQGSAADVIRRAMIKMEPALAD 935

Query: 1061 KELG--WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              LG   ++LLQVHDE+I E      E +  ++V  M        N+ V L VDA+ A N
Sbjct: 936  AGLGDRVRMLLQVHDELIFEVEDADVERSTPVIVSVMENAAMPAVNMSVPLKVDARAANN 995

Query: 1119 W 1119
            W
Sbjct: 996  W 996



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 101/251 (40%), Gaps = 60/251 (23%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED S+ K+  N  +D  +++ YG++  GF  DTM ++ + D       G
Sbjct: 465 RDALPRLKALLEDTSVLKIAQNLKYDYLLMKRYGIETKGFD-DTMLLSYVLDGGANATHG 523

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
             +++L+                       E ++G   I+ KD+ G         +GK +
Sbjct: 524 --MDSLS-----------------------ERWLGHKPIAYKDVAG---------SGKSN 549

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R       +Y+A D+  TL+L+  LK +L              + +   Y+
Sbjct: 550 ITFDLVDIDRAT-----AYAAEDADVTLRLWLVLKPRL------------AAEKLATVYE 592

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   +L  ME  G+ +DR+ LS      R   E A    R     +    +  N+G
Sbjct: 593 RLERPLVPVLAHMEERGITIDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIG 646

Query: 660 SDTQLRQLLFG 670
           S  QL  +LFG
Sbjct: 647 SPKQLGDILFG 657


>gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
 gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
          Length = 919

 Score =  186 bits (472), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 161/303 (53%), Gaps = 28/303 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GR+H S +   T TGRLS+  PNLQN P   ++  +IRQAF+A  G+ L+ ADY Q+EL
Sbjct: 643  TGRIHTSYHQAVTATGRLSSTDPNLQNIPIRTQEGRRIRQAFVAPEGHKLVAADYSQIEL 702

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K +LDAF    D H  TA  ++     AV+                    D
Sbjct: 703  RIMAHLSQDKGLLDAFAHDEDVHKATAAEVF---EVAVD--------------------D 739

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
              A +RR+AK +NF + YG +  GLA+   +S  EA+K V  ++     V T+ E  ++ 
Sbjct: 740  VTAEQRRRAKAINFGLIYGMSAFGLAKQLGISRPEAQKYVQRYFERYPGVRTYMETTREN 799

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            ++   +V T+ GR    P IK+     R   ER AIN P+QGSAAD+   AM+++     
Sbjct: 800  AKEKGYVETIFGRRLYLPEIKARNAMMRQAAERTAINAPMQGSAADIIKRAMIKMHNWLA 859

Query: 1060 LKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
              +LG K+++QVHDE+I E   +  E A+A +++ M         + V L V+A    NW
Sbjct: 860  DTDLGVKMIMQVHDELIFEVAEKDLEAAQAKIIDIM----QNSTEIDVPLLVEAGVGDNW 915

Query: 1120 YSA 1122
              A
Sbjct: 916  DEA 918


>gi|409435645|ref|ZP_11262853.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
            3'->5' exonuclease [Rhizobium mesoamericanum STM3625]
 gi|408752403|emb|CCM74000.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
            3'->5' exonuclease [Rhizobium mesoamericanum STM3625]
          Length = 956

 Score =  186 bits (472), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 164/305 (53%), Gaps = 36/305 (11%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 676  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISSPGHKLISADYSQIELRV 735

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF  G D H+ TA  M+                       VP+  +  
Sbjct: 736  LAHVAEIPQLTQAFADGVDIHAMTASEMF----------------------GVPV--EGM 771

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + ++RK+ +
Sbjct: 772  PSEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMDSRKQMA 831

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R   +V T+ GR   +P I+S   S R   ERAAIN P+QGSAAD+   AM+++     L
Sbjct: 832  RDKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADIIRRAMIKMEPA--L 889

Query: 1061 KELGW----KLLLQVHDEVILEGPSESAEVAKA--IVVECMSKPFNGKNNLRVDLSVDAK 1114
             E G     ++LLQVHDE+I E   E A+VAKA  I+V  M         +RV L VDA+
Sbjct: 890  AEAGLADRVRMLLQVHDELIFE--VEDADVAKATPIIVSVMENATMPALEMRVPLRVDAR 947

Query: 1115 CAQNW 1119
             A NW
Sbjct: 948  SATNW 952



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 61/251 (24%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED SI KV  N  +D  +++ YG++   F  DTM ++ + D+     G 
Sbjct: 422 RDALPRLKALLEDESILKVAQNLKYDYLLMKRYGVETKNFD-DTMLISYVLDAG---TGA 477

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I+ KD+ G         +GK +
Sbjct: 478 HGMDPLS-----------------------EKFLGHTPIAYKDVAG---------SGKSN 505

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L              + +   Y+
Sbjct: 506 VTFDLVDIDRATH-----YAAEDAEITLRLWLVLKPRL------------AAEKLTTVYE 548

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   +L  ME  G+ VDR+ LS +         A  +   K A           +G
Sbjct: 549 RLERPLLPVLAHMEARGITVDRQILSRLSGDLAQGAAALEDEIYKLAGGR------FTIG 602

Query: 660 SDTQLRQLLFG 670
           S  QL  +LFG
Sbjct: 603 SPKQLGDILFG 613


>gi|423090703|ref|ZP_17078989.1| DNA-directed DNA polymerase [Clostridium difficile 70-100-2010]
 gi|357555818|gb|EHJ37440.1| DNA-directed DNA polymerase [Clostridium difficile 70-100-2010]
          Length = 882

 Score =  186 bits (472), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/356 (31%), Positives = 184/356 (51%), Gaps = 32/356 (8%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++N  +    ++     D I+   ++  ++S     +L +    ++ ++ R+H S 
Sbjct: 558  KTGYSTNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNI----INPESNRIHSSF 613

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGR+S+  PNLQN P   +   KIR+ FIA     L+ ADY Q+ELR+LAH++ 
Sbjct: 614  NQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQ 673

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
             ++M++AFK   D H++TA  ++                       VP+ +D  +  R  
Sbjct: 674  DENMIEAFKHHEDIHTKTASQVFN----------------------VPM-EDVTSELRGA 710

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF I YGK+  GLA D  + V +AK+ ++ ++ +  ++  + +   +++  D +  
Sbjct: 711  AKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAV 770

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T+L R R  P IKS    +RN  +R A+N P+QGSAAD+   AM+ + K      L  KL
Sbjct: 771  TILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKL 830

Query: 1068 LLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +LQVHDE+I+E   +  ++ K IV E M        N+ V L VD     +WY  K
Sbjct: 831  ILQVHDELIVEAIDDEIDIVKKIVKEEMENAV----NMDVHLDVDLNVGSSWYETK 882


>gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1016

 Score =  186 bits (472), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 117/302 (38%), Positives = 158/302 (52%), Gaps = 30/302 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ P + LI ADY Q+ELR+
Sbjct: 736  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPRHKLISADYSQIELRV 795

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 796  LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 834

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK  +R
Sbjct: 835  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 892

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM++I     L 
Sbjct: 893  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPA--LV 950

Query: 1062 ELGW----KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQ 1117
            E+G     ++LLQVHDE+I E   E  E A  ++V  M         +RV L VDA+ A 
Sbjct: 951  EVGLADRVRMLLQVHDELIFEVEDEDVEKAMPVIVSVMENATMPALEMRVPLRVDARAAT 1010

Query: 1118 NW 1119
            NW
Sbjct: 1011 NW 1012



 Score = 59.7 bits (143), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 102/256 (39%), Gaps = 71/256 (27%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED ++ KV  N  +D  +L+ YG++   F  DTM ++ + D+     G 
Sbjct: 482 RDALPRLKALLEDEAVLKVAQNLKYDYLLLKRYGIETRSFD-DTMLISYVLDAG---TGA 537

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  KD+ G         +GK +
Sbjct: 538 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 565

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L                +   Y+
Sbjct: 566 VTFDLVDIDRATH-----YAAEDAEVTLRLWLVLKPRL------------AAAGLTSVYE 608

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
              +P   +L +ME  G+ VDR+ LS +     +  AR E E  V    ++         
Sbjct: 609 RLERPLLPVLARMEARGITVDRQILSRLSGELAQSAARLEDEIYVLAGERF--------- 659

Query: 655 YMNVGSDTQLRQLLFG 670
             N+GS  QL  +LFG
Sbjct: 660 --NIGSPKQLGDILFG 673


>gi|384044663|ref|YP_005492680.1| DNA polymerase I [Bacillus megaterium WSH-002]
 gi|345442354|gb|AEN87371.1| DNA polymerase I [Bacillus megaterium WSH-002]
          Length = 875

 Score =  186 bits (472), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 116/338 (34%), Positives = 177/338 (52%), Gaps = 30/338 (8%)

Query: 788  ACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQN 846
            A D I  + +   +  L S +I  L+   +   +G+VH   N   T+TGRLS+  PNLQN
Sbjct: 566  AHDIIPEILQYRQLGKLQSTYIEGLK-KVIHESDGKVHTRFNQTLTQTGRLSSVDPNLQN 624

Query: 847  QPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
             P   ++  KIR AF+ + P   +  ADY Q+ELR+LAH+A+ + ++DAFK   D H++T
Sbjct: 625  IPIRLEEGKKIRGAFVPSQPDWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHTKT 684

Query: 906  AMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            AM+++   R  V +                         RR+AK +NF I YG +  GL+
Sbjct: 685  AMDVFHVEREEVTSNM-----------------------RRQAKAVNFGIVYGISDYGLS 721

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
            +   ++ + A   ++ +      V  + +   ++++   +V TLL R R  P I S   +
Sbjct: 722  QSLGITRKAAATFIERYLKSFPGVQEYMDTIVRDAKEKGYVTTLLHRRRYLPEITSRNFN 781

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAE 1085
             R+  ER A+NTP+QG+AAD+   AM+E+ K  + + L  KLLLQVHDE+I E P E  +
Sbjct: 782  LRSFAERTAMNTPIQGTAADIIKKAMIEMDKRLKDENLQAKLLLQVHDELIFEAPEEEIK 841

Query: 1086 VAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + + IV E M         L V L VD    + WY AK
Sbjct: 842  ILEKIVPEVMEHAL----ELEVPLKVDYSYGKTWYEAK 875


>gi|255306032|ref|ZP_05350204.1| DNA polymerase I [Clostridium difficile ATCC 43255]
          Length = 882

 Score =  186 bits (472), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/356 (31%), Positives = 184/356 (51%), Gaps = 32/356 (8%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++N  +    ++     D I+   ++  ++S     +L +    ++ ++ R+H S 
Sbjct: 558  KTGYSTNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNI----INPESNRIHSSF 613

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGR+S+  PNLQN P   +   KIR+ FIA     L+ ADY Q+ELR+LAH++ 
Sbjct: 614  NQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQ 673

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
             ++M++AFK   D H++TA  ++                       VP+ +D  +  R  
Sbjct: 674  DENMIEAFKHHEDIHTKTASQVFN----------------------VPM-EDVTSELRGA 710

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF I YGK+  GLA D  + V +AK+ ++ ++ +  ++  + +   +++  D +  
Sbjct: 711  AKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAV 770

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T+L R R  P IKS    +RN  +R A+N P+QGSAAD+   AM+ + K      L  KL
Sbjct: 771  TILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKL 830

Query: 1068 LLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +LQVHDE+I+E   +  ++ K IV E M        N+ V L VD     +WY  K
Sbjct: 831  ILQVHDELIVEAIDDEIDIVKKIVKEEMENAV----NMDVHLDVDLNVGSSWYETK 882


>gi|126698722|ref|YP_001087619.1| DNA polymerase I [Clostridium difficile 630]
 gi|255100142|ref|ZP_05329119.1| DNA polymerase I [Clostridium difficile QCD-63q42]
 gi|115250159|emb|CAJ67980.1| DNA polymerase I (POLI) [Clostridium difficile 630]
          Length = 882

 Score =  186 bits (472), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/356 (31%), Positives = 184/356 (51%), Gaps = 32/356 (8%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++N  +    ++     D I+   ++  ++S     +L +    ++ ++ R+H S 
Sbjct: 558  KTGYSTNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNI----INPESNRIHSSF 613

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGR+S+  PNLQN P   +   KIR+ FIA     L+ ADY Q+ELR+LAH++ 
Sbjct: 614  NQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQ 673

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
             ++M++AFK   D H++TA  ++                       VP+ +D  +  R  
Sbjct: 674  DENMIEAFKHHEDIHTKTASQVFN----------------------VPM-EDVTSELRGA 710

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF I YGK+  GLA D  + V +AK+ ++ ++ +  ++  + +   +++  D +  
Sbjct: 711  AKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAV 770

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T+L R R  P IKS    +RN  +R A+N P+QGSAAD+   AM+ + K      L  KL
Sbjct: 771  TILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKL 830

Query: 1068 LLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +LQVHDE+I+E   +  ++ K IV E M        N+ V L VD     +WY  K
Sbjct: 831  ILQVHDELIVEAIDDEIDIVKKIVKEEMENAV----NMDVHLDVDLNVGSSWYETK 882


>gi|423082473|ref|ZP_17071065.1| DNA-directed DNA polymerase [Clostridium difficile 002-P50-2011]
 gi|423087885|ref|ZP_17076271.1| DNA-directed DNA polymerase [Clostridium difficile 050-P50-2011]
 gi|357544199|gb|EHJ26205.1| DNA-directed DNA polymerase [Clostridium difficile 050-P50-2011]
 gi|357548799|gb|EHJ30659.1| DNA-directed DNA polymerase [Clostridium difficile 002-P50-2011]
          Length = 882

 Score =  186 bits (472), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/356 (31%), Positives = 184/356 (51%), Gaps = 32/356 (8%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++N  +    ++     D I+   ++  ++S     +L +    ++ ++ R+H S 
Sbjct: 558  KTGYSTNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNI----INPESNRIHSSF 613

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGR+S+  PNLQN P   +   KIR+ FIA     L+ ADY Q+ELR+LAH++ 
Sbjct: 614  NQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQ 673

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
             ++M++AFK   D H++TA  ++                       VP+ +D  +  R  
Sbjct: 674  DENMIEAFKHHEDIHTKTASQVFN----------------------VPM-EDVTSELRGA 710

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF I YGK+  GLA D  + V +AK+ ++ ++ +  ++  + +   +++  D +  
Sbjct: 711  AKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAV 770

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T+L R R  P IKS    +RN  +R A+N P+QGSAAD+   AM+ + K      L  KL
Sbjct: 771  TILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKL 830

Query: 1068 LLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +LQVHDE+I+E   +  ++ K IV E M        N+ V L VD     +WY  K
Sbjct: 831  ILQVHDELIVEAIDDEIDIVKKIVKEEMENAV----NMDVHLDVDLNVGSSWYETK 882


>gi|433443886|ref|ZP_20409009.1| DNA polymerase I [Anoxybacillus flavithermus TNO-09.006]
 gi|432001860|gb|ELK22727.1| DNA polymerase I [Anoxybacillus flavithermus TNO-09.006]
          Length = 875

 Score =  186 bits (472), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 117/321 (36%), Positives = 176/321 (54%), Gaps = 36/321 (11%)

Query: 812  LQGSNVSG-------KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            LQ + V G         G+VH       T+TGRLS+  PNLQN P   ++  KIRQAF+ 
Sbjct: 582  LQSTYVEGLMKVVRKDTGKVHTIFQQALTQTGRLSSTEPNLQNIPIRIEEGRKIRQAFVP 641

Query: 864  VPGNSLI-VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQV 922
               + +I  ADY Q+ELR+LAH+AN ++++ AF    D H++TAM+++ H++        
Sbjct: 642  SSDDWVIFAADYSQIELRVLAHIANDENLIAAFHHDLDIHTKTAMDIF-HVK-------- 692

Query: 923  LLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLW 982
                  ED        +  A  RR+AK +NF I YG +  GL+++  ++ +EA + ++ +
Sbjct: 693  ------ED--------EVTAHMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAAEFIERY 738

Query: 983  YNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGS 1042
            +     V  + E   ++++   +V TLL R R  P I S   + R+  ER A+NTP+QGS
Sbjct: 739  FRSYPGVKRYMEEIIQDAKQKGYVTTLLHRRRYLPDITSSNFNVRSFAERTAMNTPIQGS 798

Query: 1043 AADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGK 1102
            AAD+   AM++++     + L  +LLLQVHDE+ILE P E  E+ K IV + M       
Sbjct: 799  AADIIKKAMIDLANRLHEERLQTRLLLQVHDELILEAPKEEIELLKKIVPDVMENAV--- 855

Query: 1103 NNLRVDLSVDAKCAQNWYSAK 1123
             +LRV L VD      WY AK
Sbjct: 856  -SLRVPLKVDYHFGPTWYDAK 875


>gi|163814036|ref|ZP_02205428.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759]
 gi|158450485|gb|EDP27480.1| DNA-directed DNA polymerase [Coprococcus eutactus ATCC 27759]
          Length = 886

 Score =  186 bits (472), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 119/335 (35%), Positives = 182/335 (54%), Gaps = 34/335 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPAL 850
            I+ + E   +  L S + + L GS +S  +GR+H + N   T TGR+S+  PNLQN P  
Sbjct: 583  INDILEYRQLSKLNSTYAIGL-GSFISS-DGRIHGTFNQTITATGRISSTDPNLQNIPMR 640

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
             +    IR+AFI   G   + ADY Q+ELR+LAHL++   M +AF+   D HS TA  ++
Sbjct: 641  MELGRLIRKAFIPQDGFVFVDADYSQVELRVLAHLSDDSVMKNAFQNNIDIHSTTASEVF 700

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                  V   +V            PL       +RR AK +NF I YG +  GL+ D  +
Sbjct: 701  -----GVPIDEV-----------TPL-------QRRHAKAVNFGIVYGISAFGLSEDLGI 737

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
            S +EA   ++ +Y+  + + T+ + + K ++ + +V T+ GR R  P +KS    QR+  
Sbjct: 738  SRKEASDFIEKYYDTYKSIKTYLDGQVKFAKENGYVKTMFGRIRPIPELKSSNFMQRSFG 797

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEVILEGPSESAEVAK 1088
            ER A+N+P+QGSAAD+   AML +  N +LKELG K  L+LQ+HDE+++E   +  +  +
Sbjct: 798  ERVAMNSPIQGSAADIIKIAMLHV--NIKLKELGLKSRLILQIHDELLIETAKDEVDTVR 855

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             I+V+ M        ++ V L V      NWY AK
Sbjct: 856  KILVDEMMHA----ADMTVPLEVGVASGNNWYEAK 886


>gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99]
 gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99]
          Length = 917

 Score =  186 bits (472), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 116/315 (36%), Positives = 168/315 (53%), Gaps = 32/315 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ ++GR+H S +  N  TGRLS+  PNLQN P   ++  +IRQAFIA  G  
Sbjct: 632  LPLM---VNAQSGRIHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAREGKK 688

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF AG D H  TA  ++    + V T Q       
Sbjct: 689  VLAADYSQIELRIMAHLSQDKGLLTAFAAGKDIHRATAAEVFDVDFDEVTTEQ------- 741

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR+AK +NF + YG +  GLA+   +S  EA+K +D ++     
Sbjct: 742  ----------------RRRAKAVNFGLIYGMSAFGLAKQLDISRPEAQKYIDTYFKRYPG 785

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  + E+    +V TL GR    PAIK     +R   ERAAIN P+QG+AAD+  
Sbjct: 786  VLKYMEETRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIK 845

Query: 1049 CAMLEISKNARLKELG-WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRV 1107
             AM+ I+     +  G  ++++QVHDE++ E  S+ AE  +  V + M+       +L V
Sbjct: 846  KAMINIAHWIATETRGEIEMIMQVHDELVFEVDSDKAEEMREKVCQLMADAV----SLDV 901

Query: 1108 DLSVDAKCAQNWYSA 1122
            +L  +A    NW  A
Sbjct: 902  ELLAEAGIGDNWEQA 916



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 104/402 (25%)

Query: 278 RNSEIECFEDGSSYTPPPKLVSFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSK 337
           R+  I+CF +          + FKR   +   N    G+G+++K ++ E      +++  
Sbjct: 272 RDELIKCFAE----------MEFKRWLAEVLDNKT--GSGKDEKTTDEE------VIKQD 313

Query: 338 LASFYSNVMVVDNVSAAKKVVWM--LTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICF 395
           + + Y+ +   + +      +W+  LTN    L+ A DTE   ++  +   V     I F
Sbjct: 314 IKTEYTTIYTHEELD-----LWIDKLTNA--DLI-AIDTETTSLNYMEAKLVG----ISF 361

Query: 396 SIYSGPEADFGNGKSCIWVDLLDGGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
           +I +G  A    G      D LD   +    + L +  P  E+P +KKV  N  +D  + 
Sbjct: 362 AIEAGKAAYLPLGH-----DYLDAPKQLDQAEALAKLKPLLENPELKKVGQNLKYDISIF 416

Query: 452 ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
            N G+K+ G   DTM  + +++S                               +K N D
Sbjct: 417 ANVGIKLQGIAFDTMLESYVFNSV-----------------------------ATKHNMD 447

Query: 512 EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWIS--YSAFDSINTLKL 569
           +     +++K   G + +  +  AGK      V++L   + +L I+  Y+A D+  TL+L
Sbjct: 448 D-----LALK-YLGHKNISFEEIAGK-----GVKQLTFNQIDLEIAAPYAAEDADITLRL 496

Query: 570 YKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLS-EI 627
           ++ L        W +L+ +P     +   + +   P  +IL  +E  G+L+D   L  + 
Sbjct: 497 HQHL--------WPRLEKEP----QLAAVFTDIELPLIQILSDIERGGVLIDGMMLGQQS 544

Query: 628 EKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
           E++AR   E     F     K        N+ S  QL+ L F
Sbjct: 545 EELARTIDELEQKAFEIAGEK-------FNLSSPKQLQALFF 579


>gi|374338919|ref|YP_005095637.1| DNA polymerase I [Streptococcus macedonicus ACA-DC 198]
 gi|372285037|emb|CCF03368.1| DNA polymerase I [Streptococcus macedonicus ACA-DC 198]
          Length = 878

 Score =  186 bits (472), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 177/335 (52%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ  +   ++G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VSKILEYRQIAKLQSTYIVGLQ--DFILQDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIA-VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+       L+ +DY Q+ELR+LAH++N + ++ AF+ G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF I YG +  GLA + 
Sbjct: 690  VF-----GIE--------KTEDVTP---------NDRRNAKAVNFGIVYGISDYGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +  + AK+ ++ ++     +  + E   ++++   +V TL  R R  P I S   + R 
Sbjct: 728  GIPRKVAKQYIETYFERYPGIKNYMERVVRDAKDKGYVETLFHRRRELPDINSRNFNIRQ 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + K     +   K+LLQVHDE+IL+ P +  E  K
Sbjct: 788  FAERTAINSPIQGSAADILKIAMINLDKALVDGQFKTKMLLQVHDEIILQVPKDELEAVK 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M        +L V L  D    Q WY AK
Sbjct: 848  TLVKETMESAI----DLSVPLIADENVGQTWYEAK 878


>gi|255655127|ref|ZP_05400536.1| DNA polymerase I [Clostridium difficile QCD-23m63]
 gi|296451114|ref|ZP_06892855.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296880534|ref|ZP_06904496.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
 gi|296259935|gb|EFH06789.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296428488|gb|EFH14373.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
          Length = 882

 Score =  186 bits (472), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/356 (31%), Positives = 184/356 (51%), Gaps = 32/356 (8%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++N  +    ++     D I+   ++  ++S     +L +    ++ ++ R+H S 
Sbjct: 558  KTGYSTNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNI----INPESNRIHSSF 613

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGR+S+  PNLQN P   +   KIR+ FIA     L+ ADY Q+ELR+LAH++ 
Sbjct: 614  NQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQ 673

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
             ++M++AFK   D H++TA  ++                       VP+ +D  +  R  
Sbjct: 674  DENMIEAFKHHEDIHTKTASQVFN----------------------VPM-EDVTSELRGA 710

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF I YGK+  GLA D  + V +AK+ ++ ++ +  ++  + +   +++  D +  
Sbjct: 711  AKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAV 770

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T+L R R  P IKS    +RN  +R A+N P+QGSAAD+   AM+ + K      L  KL
Sbjct: 771  TILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKL 830

Query: 1068 LLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +LQVHDE+I+E   +  ++ K IV E M        N+ V L VD     +WY  K
Sbjct: 831  ILQVHDELIVEAIDDEIDIVKKIVKEEMENAV----NIDVHLDVDLNVGSSWYETK 882


>gi|254974662|ref|ZP_05271134.1| DNA polymerase I [Clostridium difficile QCD-66c26]
 gi|255092051|ref|ZP_05321529.1| DNA polymerase I [Clostridium difficile CIP 107932]
 gi|255313787|ref|ZP_05355370.1| DNA polymerase I [Clostridium difficile QCD-76w55]
 gi|255649569|ref|ZP_05396471.1| DNA polymerase I [Clostridium difficile QCD-37x79]
 gi|260682732|ref|YP_003214017.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260686330|ref|YP_003217463.1| DNA polymerase I [Clostridium difficile R20291]
 gi|306519696|ref|ZP_07406043.1| DNA polymerase I [Clostridium difficile QCD-32g58]
 gi|384360315|ref|YP_006198167.1| DNA polymerase I [Clostridium difficile BI1]
 gi|260208895|emb|CBA61872.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260212346|emb|CBE03147.1| DNA polymerase I [Clostridium difficile R20291]
          Length = 882

 Score =  186 bits (472), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/356 (31%), Positives = 184/356 (51%), Gaps = 32/356 (8%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++N  +    ++     D I+   ++  ++S     +L +    ++ ++ R+H S 
Sbjct: 558  KTGYSTNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNI----INPESNRIHSSF 613

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGR+S+  PNLQN P   +   KIR+ FIA     L+ ADY Q+ELR+LAH++ 
Sbjct: 614  NQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQ 673

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
             ++M++AFK   D H++TA  ++                       VP+ +D  +  R  
Sbjct: 674  DENMIEAFKHHEDIHTKTASQVFN----------------------VPM-EDVTSELRGA 710

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF I YGK+  GLA D  + V +AK+ ++ ++ +  ++  + +   +++  D +  
Sbjct: 711  AKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAV 770

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T+L R R  P IKS    +RN  +R A+N P+QGSAAD+   AM+ + K      L  KL
Sbjct: 771  TILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKL 830

Query: 1068 LLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +LQVHDE+I+E   +  ++ K IV E M        N+ V L VD     +WY  K
Sbjct: 831  ILQVHDELIVEAIDDEIDIVKKIVKEEMENAV----NMDVHLDVDLNVGSSWYETK 882


>gi|38146973|gb|AAR11871.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  186 bits (472), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 168/303 (55%), Gaps = 28/303 (9%)

Query: 822  GRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELR 880
            GR+H + +   T TGRL++  PNLQN P    +   IR+AF+   G  LI ADY Q+ELR
Sbjct: 574  GRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYMLIDADYSQIELR 633

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            ILAH++  + +++AFK   D HS+TA  ++      V+  QV            P++   
Sbjct: 634  ILAHISEDERLINAFKNNLDIHSQTAAEIF-----GVDISQV-----------TPIM--- 674

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
                R +AK +NF I YG +  GL+RD K+S +EA + ++ ++ +  +V  + +   K +
Sbjct: 675  ----RSQAKAVNFGIVYGISDYGLSRDIKISRKEAAEFINRYFEKYPKVKEYLDNVVKFA 730

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R +  V T+  R R    IKS  ++ RN+ ER A+N+P+QGSAAD+   AM+ + K  + 
Sbjct: 731  RENGFVLTIFNRKRYIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAMIRVYKKLKE 790

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
              L  +++LQVHDE+++E P E  E+ K IV   M         L+V L V+ K   NWY
Sbjct: 791  NNLKSRIILQVHDELLIESPYEEKEIVKEIVKSEMENAV----LLKVPLVVEVKEGSNWY 846

Query: 1121 SAK 1123
              K
Sbjct: 847  ETK 849


>gi|116628454|ref|YP_821073.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|386087361|ref|YP_006003235.1| DNA polymerase I [Streptococcus thermophilus ND03]
 gi|116101731|gb|ABJ66877.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|312279074|gb|ADQ63731.1| DNA polymerase I [Streptococcus thermophilus ND03]
          Length = 879

 Score =  186 bits (471), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 185/337 (54%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQVHDE++LE PS+    
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQVHDEIVLEVPSDELLA 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             KA+V E M         L V L  D      WY AK
Sbjct: 847  MKALVKETMESAV----ELAVPLIADENEGCTWYEAK 879


>gi|423203112|ref|ZP_17189690.1| DNA polymerase I [Aeromonas veronii AER39]
 gi|404613755|gb|EKB10774.1| DNA polymerase I [Aeromonas veronii AER39]
          Length = 921

 Score =  186 bits (471), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 177/358 (49%), Gaps = 37/358 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  +    L E   +  L S +   LPL    +  + GRVH 
Sbjct: 596  KGAPSTAEEVLA---ELAETYELPQLLMEHRGLAKLKSTYTDKLPLM---IKPRTGRVHT 649

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 650  SYHQAVAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHL 709

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +L AF  G D H  TA  ++    +AV T                         R
Sbjct: 710  SGDKGLLTAFAEGKDIHKATAAEVFGVALDAVTTDM-----------------------R 746

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GLA+   +   EA+K +DL++     VL + E  ++++    +
Sbjct: 747  RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQAEAQGY 806

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKELG 1064
            V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R +++  
Sbjct: 807  VETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDSWIRGIEDES 866

Query: 1065 WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
             ++L+QVHDE++ E   E  E   AI+ E MS        L V L V+A    NW  A
Sbjct: 867  IRMLMQVHDELVFEIREEKLEEYTAIIKEKMS----AAAELHVPLLVEAGTGDNWDQA 920


>gi|212638359|ref|YP_002314879.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
 gi|212559839|gb|ACJ32894.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
          Length = 875

 Score =  186 bits (471), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 117/321 (36%), Positives = 176/321 (54%), Gaps = 36/321 (11%)

Query: 812  LQGSNVSG-------KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            LQ + V G         G+VH       T+TGRLS+  PNLQN P   ++  KIRQAF+ 
Sbjct: 582  LQSTYVEGLMKVVRKDTGKVHTIFQQALTQTGRLSSTEPNLQNIPIRIEEGRKIRQAFVP 641

Query: 864  VPGNSLI-VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQV 922
               + +I  ADY Q+ELR+LAH+AN ++++ AF    D H++TAM+++ H++        
Sbjct: 642  SSDDWVIFAADYSQIELRVLAHIANDENLIAAFHHDLDIHTKTAMDIF-HVK-------- 692

Query: 923  LLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLW 982
                  ED        +  A  RR+AK +NF I YG +  GL+++  ++ +EA + ++ +
Sbjct: 693  ------ED--------EVTAHMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAAEFIERY 738

Query: 983  YNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGS 1042
            +     V  + E   ++++   +V TLL R R  P I S   + R+  ER A+NTP+QGS
Sbjct: 739  FRSYPGVKRYMEEVVQDAKQKGYVTTLLHRRRYLPDITSGNFNVRSFAERTAMNTPIQGS 798

Query: 1043 AADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGK 1102
            AAD+   AM++++     + L  +LLLQVHDE+ILE P E  E+ K IV + M       
Sbjct: 799  AADIIKKAMIDLANRLHEERLQTRLLLQVHDELILEAPKEEIELLKKIVPDVMENAV--- 855

Query: 1103 NNLRVDLSVDAKCAQNWYSAK 1123
             +LRV L VD      WY AK
Sbjct: 856  -SLRVPLKVDYHFGPTWYDAK 875


>gi|38146969|gb|AAR11869.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  186 bits (471), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 169/308 (54%), Gaps = 28/308 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++   GR+H + +   T TGRL++  PNLQN P    +   IR+AF+   G  LI ADY 
Sbjct: 569  INPATGRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYVLIDADYS 628

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRILAH++  + +++AFK   D HS+TA  ++      V+  QV            P
Sbjct: 629  QIELRILAHISEDERLINAFKNNLDIHSQTAAEIF-----GVDISQV-----------TP 672

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            ++       R +AK +NF I YG +  GL+RD K+S +EA + ++ ++ +   V  + + 
Sbjct: 673  IM-------RSQAKAVNFGIVYGISDYGLSRDIKISRKEAAEFINRYFEKYPRVKEYLDN 725

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              K +R +  V T+  R R    IKS  ++ RN+ ER A+N+P+QGSAAD+   AM+ + 
Sbjct: 726  VVKFARENGFVLTIFNRKRYIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAMIRVY 785

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
            K  +   L  +++LQVHDE+++E P E  E+ K IV   M         L+V L V+ K 
Sbjct: 786  KKLKENNLKSRIILQVHDELLIESPYEEKEIVKEIVKSEMENAV----LLKVPLVVEVKE 841

Query: 1116 AQNWYSAK 1123
              NWY  K
Sbjct: 842  GSNWYETK 849


>gi|384176498|ref|YP_005557883.1| DNA polymerase I superfamily [Bacillus subtilis subsp. subtilis str.
            RO-NN-1]
 gi|349595722|gb|AEP91909.1| DNA polymerase I superfamily [Bacillus subtilis subsp. subtilis str.
            RO-NN-1]
          Length = 880

 Score =  186 bits (471), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 181/337 (53%), Gaps = 32/337 (9%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNG-RVHCSLN-INTETGRLSARRPNLQNQ 847
            D +  + +   I  L S +I  L    V+ K+  +VH   N   T+TGRLS+  PNLQN 
Sbjct: 573  DIVDYILQYRQIGKLQSTYIEGLL--KVTRKDSHKVHTRFNQALTQTGRLSSTDPNLQNI 630

Query: 848  PALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
            P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF    D H++TA
Sbjct: 631  PIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTA 690

Query: 907  MNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLAR 966
            M+++   ++ V +                         RR+AK +NF I YG +  GL++
Sbjct: 691  MDVFHVAKDEVTSAM-----------------------RRQAKAVNFGIVYGISDYGLSQ 727

Query: 967  DWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQ 1026
            +  ++ +EA   +D +    Q V  + E   +E++   +V TL+ R R  P + S   + 
Sbjct: 728  NLGITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNI 787

Query: 1027 RNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEV 1086
            R+  ER A+NTP+QGSAAD+   AM++++   + K+L  +LLLQVHDE+I E P E  E+
Sbjct: 788  RSFAERTAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEI 847

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             + +V E M         L V L VD     +WY AK
Sbjct: 848  LEKLVPEVMEHAL----ALDVPLKVDFASGPSWYDAK 880


>gi|296445991|ref|ZP_06887941.1| DNA polymerase I [Methylosinus trichosporium OB3b]
 gi|296256509|gb|EFH03586.1| DNA polymerase I [Methylosinus trichosporium OB3b]
          Length = 993

 Score =  186 bits (471), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 157/304 (51%), Gaps = 24/304 (7%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+    RVH S  +  T TGRLS+  PNLQN P   +   KIR+AF+A PG++LI ADY 
Sbjct: 709  VNKATNRVHTSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRKAFVAEPGHALISADYS 768

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H++TA  M+                       VP
Sbjct: 769  QIELRLLAHIADIPQLRQAFAEGIDIHAKTASEMFG----------------------VP 806

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            + +   +  RR+AK +NF I YG +  GLA    +  EEA   +  ++     +  + + 
Sbjct: 807  V-QGMPSDVRRRAKAINFGIIYGISAFGLANQLGIPREEAAAYIKRYFERFPGIRDYMDK 865

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             K+  R    V T+ GR   FP I S   S+R   ERAAIN P+QG+AAD+   AM  + 
Sbjct: 866  TKRLVREQGVVTTIFGRKCHFPRIGSSNASERAFFERAAINAPIQGAAADIIRRAMARMD 925

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
                      ++L+QVHDE++ E P E  E   A+V   M +  +    L V L V+A+ 
Sbjct: 926  AALATAGCSARMLMQVHDELVFEAPLEETETTIAVVKRVMEEAPHPAATLTVPLQVEARA 985

Query: 1116 AQNW 1119
            AQNW
Sbjct: 986  AQNW 989


>gi|218662905|ref|ZP_03518835.1| DNA polymerase I [Rhizobium etli IE4771]
          Length = 564

 Score =  186 bits (471), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 116/302 (38%), Positives = 158/302 (52%), Gaps = 30/302 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 284  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 343

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 344  LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 382

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK  +R
Sbjct: 383  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 440

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM+++     L 
Sbjct: 441  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKMEPA--LA 498

Query: 1062 ELGW----KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQ 1117
            + G     ++LLQVHDE+I E   E  + A  I+V  M         +RV L VDA+ A 
Sbjct: 499  QAGLAERVRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLRVDARAAT 558

Query: 1118 NW 1119
            NW
Sbjct: 559  NW 560



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 99/251 (39%), Gaps = 61/251 (24%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED S+ KV  N  +D  +L+ YG++   F  DTM ++ + D+     G 
Sbjct: 30  RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETRSFD-DTMLISYVLDAG---TGA 85

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  KD+ G         +GK +
Sbjct: 86  HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 113

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L                +   Y+
Sbjct: 114 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 156

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   +L +ME  G+ VDR+ LS      R   E A    R     +    +  N+G
Sbjct: 157 RLERPLLPVLARMEARGVTVDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIG 210

Query: 660 SDTQLRQLLFG 670
           S  QL  +LFG
Sbjct: 211 SPKQLGDILFG 221


>gi|387910456|ref|YP_006340762.1| DNA polymerase I [Streptococcus thermophilus MN-ZLW-002]
 gi|387575391|gb|AFJ84097.1| DNA polymerase I [Streptococcus thermophilus MN-ZLW-002]
          Length = 879

 Score =  186 bits (471), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 185/337 (54%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQVHDE++LE PS+    
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQVHDEIVLEVPSDELLA 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             KA+V E M         L V L  D      WY AK
Sbjct: 847  MKALVKETMESAV----ELAVPLIADENEGCTWYEAK 879


>gi|418966121|ref|ZP_13517870.1| DNA-directed DNA polymerase [Streptococcus constellatus subsp.
            constellatus SK53]
 gi|383340775|gb|EID19063.1| DNA-directed DNA polymerase [Streptococcus constellatus subsp.
            constellatus SK53]
          Length = 835

 Score =  186 bits (471), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 180/347 (51%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +GR+H   L   T+TGRLS
Sbjct: 516  AVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGRIHTRYLQDLTQTGRLS 575

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + +++AF+
Sbjct: 576  SVDPNLQNIPIRLEQGRL-IRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDEHLIEAFR 634

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D   ++RR AK +NF + 
Sbjct: 635  HGADIHTSTAMRVF-----------------GIEKP-----EDVTPNDRRNAKAVNFGVV 672

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 673  YGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVETLFHRRREI 732

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +    +    ++LLQVHDE++
Sbjct: 733  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALTDRNFKTRMLLQVHDEIV 792

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P       K +V + M         L V L  D    + WY AK
Sbjct: 793  LEVPENELTAIKTLVKDIMESAI----ELVVPLKADESAGKTWYEAK 835


>gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
 gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 688

 Score =  186 bits (471), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 158/305 (51%), Gaps = 26/305 (8%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 404  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 463

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 464  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFG----------------------VP 501

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 502  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 559

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 560  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 619

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                  + L  ++LLQVHDE+I E P    E    +V   M        +L V L VDA+
Sbjct: 620  EDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDAR 679

Query: 1115 CAQNW 1119
             A NW
Sbjct: 680  AAHNW 684



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 100 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 146

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 147 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 205

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 206 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 234

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 235 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 273

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 274 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 329

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 330 --GEKFTIGSPKQLGDILFGKMGLPGA 354


>gi|419707636|ref|ZP_14235118.1| DNA polymerase I [Streptococcus salivarius PS4]
 gi|383282636|gb|EIC80618.1| DNA polymerase I [Streptococcus salivarius PS4]
          Length = 879

 Score =  186 bits (471), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 186/337 (55%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H     + T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ ++ ++     +  + E   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYINTYFERYPGIKAYMENVVREAKDKGYVETLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQVHDE++LE P++    
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQVHDEIVLEVPNDELVA 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             KA+V E M         L V L  D    + WY AK
Sbjct: 847  MKALVKETMEAAV----ELAVPLIADENDGRTWYEAK 879


>gi|238921711|ref|YP_002935226.1| DNA polymerase I, putative [Edwardsiella ictaluri 93-146]
 gi|238871280|gb|ACR70991.1| DNA polymerase I, putative [Edwardsiella ictaluri 93-146]
          Length = 930

 Score =  186 bits (471), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 122/356 (34%), Positives = 177/356 (49%), Gaps = 35/356 (9%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCS 827
            GA ++N ++     E   A   +  + E  ++  L S +   LPL    V+   GRVH S
Sbjct: 606  GAPSTNEEVLVELAEQGYALPQV--ILEYRTLAKLKSTYTDKLPLM---VNPLTGRVHTS 660

Query: 828  LN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLA 886
             +   T TGRLS+  PNLQN P    +  +IRQAFIA  G+ ++ ADY Q+ELRI+AHL+
Sbjct: 661  YHQAVTATGRLSSSDPNLQNIPVRSDEGRRIRQAFIAPVGSRIVAADYSQIELRIMAHLS 720

Query: 887  NCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERR 946
              K +L AF AG D H  TA  ++     AV                        A +RR
Sbjct: 721  GDKGLLQAFAAGKDIHRATAAEVFGLPLEAVS-----------------------ADQRR 757

Query: 947  KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006
             AK +NF + YG +  GLAR   +   EA++ +DL++     VL + E  ++ +    +V
Sbjct: 758  SAKAINFGLIYGMSAFGLARQLNIGRGEAQRYMDLYFERYPGVLAYMERTRQLASDQGYV 817

Query: 1007 HTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK 1066
             TL GR    P I +    +R   ERAAIN P+QG+AAD+   AM+ +    +  +L  +
Sbjct: 818  ETLDGRRLYLPEINARNGMRRKAAERAAINAPMQGTAADIIKRAMIAVDGWLQETQLEVR 877

Query: 1067 LLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            +++QVHDE++ E P    E     V   M        +L V L VD  C +NW  A
Sbjct: 878  MIMQVHDELVFEVPESQVEAVVCQVRVLMENSL----SLAVPLKVDIGCGENWDQA 929


>gi|261418256|ref|YP_003251938.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|319767784|ref|YP_004133285.1| DNA polymerase I [Geobacillus sp. Y412MC52]
 gi|448239015|ref|YP_007403073.1| DNA polymerase I [Geobacillus sp. GHH01]
 gi|261374713|gb|ACX77456.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|317112650|gb|ADU95142.1| DNA polymerase I [Geobacillus sp. Y412MC52]
 gi|445207857|gb|AGE23322.1| DNA polymerase I [Geobacillus sp. GHH01]
          Length = 876

 Score =  186 bits (471), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 172/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 601  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 660

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 661  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 697

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 698  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 757

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 758  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 815

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 816  KEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 871

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 872  WYDAK 876


>gi|322373711|ref|ZP_08048247.1| DNA polymerase I [Streptococcus sp. C150]
 gi|321278753|gb|EFX55822.1| DNA polymerase I [Streptococcus sp. C150]
          Length = 879

 Score =  186 bits (471), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 186/337 (55%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H     + T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ ++ ++     +  + E   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYINTYFERYPGIKAYMENVVREAKDKGYVETLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQVHDE++LE P++    
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQVHDEIVLEVPNDELVA 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             KA+V E M         L V L  D    + WY AK
Sbjct: 847  MKALVKETMEAAV----ELAVPLIADENDGRTWYEAK 879


>gi|407975471|ref|ZP_11156376.1| DNA polymerase I [Nitratireductor indicus C115]
 gi|407429099|gb|EKF41778.1| DNA polymerase I [Nitratireductor indicus C115]
          Length = 983

 Score =  186 bits (471), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 115/310 (37%), Positives = 160/310 (51%), Gaps = 29/310 (9%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA  G  LI ADY 
Sbjct: 698  INAETGRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRAAFIAPRGRKLISADYS 757

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+              +   E  PP  
Sbjct: 758  QIELRVLAHVADIPELKKAFADGLDIHAMTASEMF--------------DVPVEGMPP-- 801

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR+AK +NF I YG +  GLA    +  EEA   +  ++     +  + + 
Sbjct: 802  -------EVRRRAKAINFGIIYGISAFGLANQLGIPREEAGAYIKRYFERFPGIKDYMDN 854

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADV---AMCAML 1052
             K ++R   +V T+ GR   +P I+S     R   ERAAIN P+QGSAAD+   AM  M 
Sbjct: 855  TKAQARATGYVETIFGRRAHYPEIRSSNPQLRAFNERAAINAPIQGSAADIIRRAMARMD 914

Query: 1053 EISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
               +NA L E+  ++LLQVHDE++ E P E+ E    ++ + M         L V L V+
Sbjct: 915  AALENAGLGEV--QMLLQVHDELVFEAPEEAVEKVIPVICDIMENAALPARALSVPLQVE 972

Query: 1113 AKCAQNWYSA 1122
            A+ A NW  A
Sbjct: 973  ARAADNWDEA 982



 Score = 42.4 bits (98), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 48/251 (19%), Positives = 102/251 (40%), Gaps = 56/251 (22%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEG- 480
           ++ L+       DP++ K+  N  +D  ++   G+++     DTM ++ + D+   + G 
Sbjct: 445 KEALDAIRGLMADPAVLKIGQNLKYDWLLMYRLGVEIVNCD-DTMLISYVLDAGTGSHGT 503

Query: 481 -GYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKIS 539
            G+ ++AL+                       E ++G + +         K+   +G+  
Sbjct: 504 VGHGMDALS-----------------------ERWLGHVPIP-------YKELTGSGRNQ 533

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + +++R       +Y+A D+  TL+L++ LK +L              + +   Y+
Sbjct: 534 ITFDMVDIERA-----TAYAAEDADITLRLWQVLKPRL------------AARGLVSVYE 576

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   ++ +ME  G+ VDR+ LS +         A  +   + A +         +G
Sbjct: 577 RLERPMIPVIGRMEHRGIEVDRQILSRLSGDFAQTAAAMEDEIYELAGER------FTIG 630

Query: 660 SDTQLRQLLFG 670
           S  QL  +LFG
Sbjct: 631 SPKQLGDILFG 641


>gi|433654694|ref|YP_007298402.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum M0795]
 gi|433292883|gb|AGB18705.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum M0795]
          Length = 867

 Score =  186 bits (471), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 185/345 (53%), Gaps = 40/345 (11%)

Query: 792  ISALCEVCSIDSLISNFI-----LPLQGSNVSG------KNGRVHCSLNINTE-TGRLSA 839
            +  L E+   + ++   I     + L+ + + G      KN +VH +       TGR+S+
Sbjct: 550  MEVLVELIPYNEIVGEIIEYRQLMKLKSTYIDGFMPIMDKNDKVHSTFKQTVAATGRISS 609

Query: 840  RRPNLQNQPALEKDRYKIRQAFIA-VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
              PNLQN P  ++   +IR+AFI+   G  ++ ADY Q+ELR+LAHL+  + ++++F   
Sbjct: 610  TEPNLQNIPIRDEFGRRIRKAFISSFQGGYIVSADYSQIELRVLAHLSEDEKLIESFLNN 669

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H RTA  ++      V TG++                      RR+AK +NF I YG
Sbjct: 670  EDIHLRTASEVFKIAPEEV-TGEM----------------------RRRAKAVNFGIVYG 706

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GL+RD K+S +EAK+ +D +++  + V  + ++  K +R + +V T+L R R  P 
Sbjct: 707  ISDYGLSRDLKISRKEAKEYIDNYFDRYKGVKNYIDSVVKFARENGYVTTILNRRRYIPE 766

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            I S   +QR+  ER A+NTP+QGSAAD+   +M+++    + + L  KL+LQ+HDE+I++
Sbjct: 767  INSKNYNQRSFGERMAMNTPIQGSAADIIKMSMVKVYNELKSRSLKSKLILQIHDELIVD 826

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
               +  E+ K ++   M         LRV L VD    +NWY AK
Sbjct: 827  TFPDEVEIVKDLLKTIMENVI----KLRVPLVVDIGRGKNWYDAK 867


>gi|419800176|ref|ZP_14325475.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0449]
 gi|385696029|gb|EIG26552.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0449]
          Length = 881

 Score =  186 bits (471), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 181/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I S I  +  I  +Q + V G      ++G++H   +   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRYVQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + ++DAFK
Sbjct: 622  SVDPNLQNIPVRLEQGRL-IRKAFVPEEDNSVLLSSDYSQIELRVLAHISGDEHLIDAFK 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                   +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------NIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  ++ ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         K+LLQVHDE++
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALEAGAYKTKMLLQVHDEIV 838

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            L+ PS+     K +V E M         L V L  D    + WY AK
Sbjct: 839  LQVPSDELAAIKELVKETMESAI----ELAVPLEADENEGKTWYEAK 881


>gi|334127246|ref|ZP_08501174.1| DNA-directed DNA polymerase I [Centipeda periodontii DSM 2778]
 gi|333389746|gb|EGK60904.1| DNA-directed DNA polymerase I [Centipeda periodontii DSM 2778]
          Length = 877

 Score =  186 bits (471), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 115/315 (36%), Positives = 172/315 (54%), Gaps = 35/315 (11%)

Query: 814  GSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG---NSL 869
            G+ +    GRVH S N   T TGRLS+  PNLQN P   ++   +R  F   PG   + L
Sbjct: 593  GALIRPATGRVHTSFNQTVTATGRLSSSDPNLQNIPVRTEEGRSVRALF--EPGEGYDVL 650

Query: 870  IVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGE 929
            + ADY Q+ELRILAH++   +++DAF++G D H+RTA  ++                   
Sbjct: 651  LSADYSQIELRILAHMSGDATLIDAFRSGQDIHARTASEVFG------------------ 692

Query: 930  DKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                VP+  D+  SE RR+AK +NF I YG +  GLARD  +S +EA   ++ ++     
Sbjct: 693  ----VPI--DSVTSEQRRRAKAVNFGIVYGLSDFGLARDLGISRKEAAGYIERYFERYHG 746

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            V  + +    ++  +  V TL GR R  PAI S    QR+  ER A+NTP+QG+AAD+  
Sbjct: 747  VREFLDKTIADAHTNGSVTTLYGRRRDLPAIHSRNFMQRSFAERMAMNTPIQGTAADLIK 806

Query: 1049 CAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVD 1108
             AM+   +  R  ++  ++LLQVHDE++LE  ++  E+A+   + C +   +G   L V 
Sbjct: 807  IAMIRADEALRAADVRSRILLQVHDELVLEVVAD--EIAQVSDILCTA--MSGAAELAVP 862

Query: 1109 LSVDAKCAQNWYSAK 1123
            L+VD    +NW  AK
Sbjct: 863  LAVDVHTGKNWAEAK 877


>gi|374334321|ref|YP_005091008.1| DNA polymerase I [Oceanimonas sp. GK1]
 gi|372984008|gb|AEY00258.1| DNA polymerase I [Oceanimonas sp. GK1]
          Length = 911

 Score =  186 bits (471), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 117/332 (35%), Positives = 173/332 (52%), Gaps = 34/332 (10%)

Query: 795  LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
            L E   +  L S +   LPL    V+  +GR+H S +  NT TGRLS+  PNLQN P   
Sbjct: 609  LMEYRGLSKLKSTYTDKLPLM---VNEHSGRIHTSYHQANTATGRLSSSDPNLQNIPIRT 665

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
             +  +IRQAF+A PG  L+ ADY Q+ELRI+AHL+  + +LDAF  G D H  TA  ++ 
Sbjct: 666  PEGRRIRQAFVAEPGYKLVAADYSQIELRIMAHLSQDQGLLDAFAHGQDIHKATAAEVF- 724

Query: 912  HIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971
                 V   QV                   A +RR+AK +NF + YG +  GLAR   + 
Sbjct: 725  ----GVAVEQV------------------SAEQRRRAKAINFGLIYGMSAFGLARQLGIG 762

Query: 972  VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIE 1031
              EA+  +++++     VL + E  ++++    +V TL GR    P IKS   ++R   E
Sbjct: 763  RNEAQDYMNIYFERYPGVLRYMETTREQASEQGYVSTLFGRRLYLPEIKSKNGARRKGAE 822

Query: 1032 RAAINTPVQGSAADVAMCAMLEISK-NARLKELGWKLLLQVHDEVILEGPSESAEVAKAI 1090
            RAAIN P+QG+AAD+   AM+ ++     L E   ++L+QVHDE++ E   +  +  +  
Sbjct: 823  RAAINAPMQGTAADIIKQAMIRVNDWLGELPEGEVRMLMQVHDELVFEIREDKVDAHRET 882

Query: 1091 VVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            +   M +      +L V L V+A    NW  A
Sbjct: 883  ICALMQQ----AASLDVPLLVEAGVGDNWDQA 910


>gi|340347219|ref|ZP_08670331.1| DNA-directed DNA polymerase I [Prevotella dentalis DSM 3688]
 gi|433652418|ref|YP_007278797.1| DNA polymerase I [Prevotella dentalis DSM 3688]
 gi|339609789|gb|EGQ14652.1| DNA-directed DNA polymerase I [Prevotella dentalis DSM 3688]
 gi|433302951|gb|AGB28767.1| DNA polymerase I [Prevotella dentalis DSM 3688]
          Length = 920

 Score =  186 bits (471), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 174/341 (51%), Gaps = 29/341 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARR 841
            Q+ R+    +  +     +  L+  ++  L    V+ + GR+H S N   T TGRLS+  
Sbjct: 607  QQLRDKAPIVDDILNYRGLKKLLGTYVEALP-KLVNPRTGRIHTSFNQAVTATGRLSSSD 665

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQN P  + D  +IR+ F+  PG     ADY Q+ELRI+AHL+  ++M++AF+ G D 
Sbjct: 666  PNLQNIPVRDDDGKEIRKCFVPEPGCRFFSADYSQIELRIMAHLSGDENMIEAFREGFDI 725

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H  TA  +                WH E    +  + DA   +R++AK  NF I YG T 
Sbjct: 726  HRATAAKI----------------WHKE----MAAVTDA---QRKQAKQANFGIIYGITT 762

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA+   +   EA++ +D ++    +V  + E  K+++R   +  TL GR R  P I S
Sbjct: 763  FGLAQRMNIGNNEARQLIDDYFATFPKVHAYMEQAKEQARQHGYAETLFGRRRYLPDIVS 822

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPS 1081
               + R   ER AIN P+QGS AD+   AM+ I +  + + L  K++LQVHDE+      
Sbjct: 823  RNATVRGFAERNAINAPIQGSEADIIKLAMIRIWQRFKAEGLHSKMILQVHDELNFSVFP 882

Query: 1082 ESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            + AE  + IV+E M     G   L V L+ DA    NW  A
Sbjct: 883  DEAERVERIVIEEM----QGVCTLSVPLTADAGWGDNWLEA 919



 Score = 44.3 bits (103), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 87/246 (35%), Gaps = 56/246 (22%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
           +N F   +EDP I KV  N  +D  VL  YG+ V G   DTM    +          Y  
Sbjct: 394 VNIFKSLYEDPEILKVGQNIKYDYEVLRQYGVDVQGPMFDTMLAHYVLQPELHHNMDYMA 453

Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
           E L   R V  E+        +KG       G+ +M+D+  R+  +              
Sbjct: 454 ETLLNYRTVHIEELIG-----AKGR------GQRNMRDLTPRQVYE-------------- 488

Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQP 604
                        Y+  D+  TL+L   L+ +L E   +              +++   P
Sbjct: 489 -------------YACEDADVTLRLKNVLEPRLAEAGAE------------RLFRDIEMP 523

Query: 605 FGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQL 664
              +L  ME  G+ +D   L+   +      E   +   + A K        N+ S  Q+
Sbjct: 524 LVRVLADMELNGVCLDTAALAATRRSFTERMEQYEHHAYELAGKS------FNISSPKQV 577

Query: 665 RQLLFG 670
             +LFG
Sbjct: 578 GDILFG 583


>gi|297529110|ref|YP_003670385.1| DNA polymerase I [Geobacillus sp. C56-T3]
 gi|297252362|gb|ADI25808.1| DNA polymerase I [Geobacillus sp. C56-T3]
          Length = 876

 Score =  186 bits (471), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 172/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 601  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 660

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 661  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 697

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 698  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 757

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 758  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 815

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 816  KEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 871

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 872  WYDAK 876


>gi|398355812|ref|YP_006401276.1| DNA polymerase I [Sinorhizobium fredii USDA 257]
 gi|390131138|gb|AFL54519.1| DNA polymerase I [Sinorhizobium fredii USDA 257]
          Length = 1004

 Score =  186 bits (471), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 112/299 (37%), Positives = 153/299 (51%), Gaps = 26/299 (8%)

Query: 823  RVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH C     T TGRLS+  PNLQN P    +  KIR AF+A PG  L+ ADY Q+ELR+
Sbjct: 726  RVHTCYALAATTTGRLSSSEPNLQNIPVRTAEGRKIRTAFVATPGRKLVSADYSQIELRV 785

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+                       VP+  D  
Sbjct: 786  LAHVADIPQLRQAFADGVDIHAMTASEMFG----------------------VPV--DGM 821

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E  K  +
Sbjct: 822  PSEIRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFA 881

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R   +V T+ GR   +P I+S   S R   ERA+IN P+QGSAAD+   AM+++      
Sbjct: 882  REHGYVETIFGRRAHYPDIRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEE 941

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             +L  ++LLQVHDE+I E      E    ++V  M        ++RV L VDA+ AQNW
Sbjct: 942  AKLSARMLLQVHDELIFEVEEGEIESTVPVIVSVMENAAMPALDMRVPLKVDARAAQNW 1000


>gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12]
 gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12]
          Length = 917

 Score =  186 bits (471), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 169/315 (53%), Gaps = 32/315 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K+GRVH S +  N  TGRLS+  PNLQN P   ++  +IR AFIA  G  
Sbjct: 632  LPLM---VNAKSGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAREGKK 688

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  + +L AF AG D H  TA  ++      V+ G+V  E   
Sbjct: 689  VLAADYSQIELRIMAHLSQDEGLLTAFAAGKDIHRATAAEVFD-----VDFGEVTTE--- 740

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                           +RR+AK +NF + YG +  GLA+   +   EA+K +D ++     
Sbjct: 741  ---------------QRRRAKAVNFGLIYGMSAFGLAKQLDIPRPEAQKYIDTYFKRYPG 785

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  + E+    +V TL GR    PAIK     +R   ERAAIN P+QG+AAD+  
Sbjct: 786  VLKYMEETRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIK 845

Query: 1049 CAMLEISKNARLKELG-WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRV 1107
             AM+ I+     +  G   +++QVHDE++ E  S+ AE  +A V + M+       +L V
Sbjct: 846  KAMINIAHWIATETHGEIDMIMQVHDELVFEVDSDRAEEMQAKVCQLMADAV----SLDV 901

Query: 1108 DLSVDAKCAQNWYSA 1122
            +L  +A    NW  A
Sbjct: 902  ELLAEAGIGDNWEQA 916



 Score = 43.1 bits (100), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 158/405 (39%), Gaps = 110/405 (27%)

Query: 278 RNSEIECFEDGSSYTPPPKLVSFKR--SNQKNPKNDAAEGTGQNKKASENENSEKLEILR 335
           R+  IECF +          + FKR  ++  + K D    +G+++K ++ E      +++
Sbjct: 272 RDELIECFGE----------MEFKRWLADVLDNKTD----SGKSEKNTDEE------VIK 311

Query: 336 SKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICF 395
             + + Y+ +   + +      +W+       L+ A DTE   ++      V     I F
Sbjct: 312 QDIQTEYTTIYTHEELD-----LWIDKLANADLI-AIDTETTSLNYMDAKLVG----ISF 361

Query: 396 SIYSGPEADFGNGKSCIWVDLLDGGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
           +I +G  A    G      D LD   +    + L +  P  E+P +KKV  N  +D  + 
Sbjct: 362 AIEAGKAAYLPLGH-----DYLDAPEQLDQAEALAKLKPLLENPELKKVGQNLKYDISIF 416

Query: 452 ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
            N G+K+ G   DTM  + +++S                               +K N D
Sbjct: 417 ANVGIKLQGIAFDTMLESYVFNSVA-----------------------------TKHNMD 447

Query: 512 E---GFMG--KISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINT 566
           +    ++G   IS ++I G+   +   +   + T AP              Y+A D+  T
Sbjct: 448 DLALKYLGHKNISFEEIAGKGVKQLTFNQIDLETAAP--------------YAAEDADIT 493

Query: 567 LKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLS 625
           L+L++ L        W +L+ +P     +   + +   P  ++L  +E  G+L+D   L 
Sbjct: 494 LRLHQHL--------WPRLEKEP----ELASVFTDIELPLIQVLSDIERGGVLIDSMMLG 541

Query: 626 EIE-KVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
           +   ++AR   E     F     K        N+ S  QL+ L F
Sbjct: 542 QQSGELARTIDELEQKAFEIAGEK-------FNLSSPKQLQVLFF 579


>gi|306834469|ref|ZP_07467582.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338]
 gi|304423271|gb|EFM26424.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338]
          Length = 878

 Score =  186 bits (471), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 177/335 (52%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ  +   ++G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VSKILEYRQIAKLQSTYIVGLQ--DFILQDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIA-VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+       L+ +DY Q+ELR+LAH++N + ++ AF+ G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF I YG +  GLA + 
Sbjct: 690  VF-----GIE--------KTEDVTP---------NDRRNAKAVNFGIVYGISDYGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +  + AK+ ++ ++     +  + E   ++++   +V TL  R R  P I S   + R 
Sbjct: 728  GIPRKVAKQYIETYFERYPGIKNYMERVVRDAKDKGYVETLFHRRRELPDINSRNFNIRQ 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + K     +   K+LLQVHDE+IL+ P +  E  K
Sbjct: 788  FAERTAINSPIQGSAADILKIAMINLDKALVDGQFKTKMLLQVHDEIILQVPKDELEAVK 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M        +L V L  D    Q WY AK
Sbjct: 848  TLVKETMESAI----DLSVPLIADENAGQTWYEAK 878


>gi|421588531|ref|ZP_16033809.1| DNA polymerase I [Rhizobium sp. Pop5]
 gi|403706740|gb|EJZ21922.1| DNA polymerase I [Rhizobium sp. Pop5]
          Length = 999

 Score =  186 bits (471), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 118/303 (38%), Positives = 159/303 (52%), Gaps = 32/303 (10%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+  G+ LI ADY Q+ELR+
Sbjct: 719  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTQGHKLISADYSQIELRV 778

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+                       VP+  +  
Sbjct: 779  LAHVAEIPQLTRAFEEGVDIHAMTASEMF----------------------GVPV--EGM 814

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK  +
Sbjct: 815  PSEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMA 874

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R   +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM+++     L
Sbjct: 875  RDKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKMEPA--L 932

Query: 1061 KELGW----KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCA 1116
             E G     ++LLQVHDE+I E   E  E A  I+V  M         +RV L VDA+ A
Sbjct: 933  AEAGLAERVRMLLQVHDELIFEVEDEDVEKAMPIIVSVMENATMPALEMRVPLKVDARAA 992

Query: 1117 QNW 1119
             NW
Sbjct: 993  TNW 995



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 57/249 (22%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED S+ KV  N  +D  +++ YG++   F  DTM ++ + D+     G 
Sbjct: 465 RDALPRLKALLEDESVLKVAQNLKYDYLLMKRYGVETRSFD-DTMLISYVLDAG---TGA 520

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
           + ++ L+   K +S     Y                   KD+ G         +GK +  
Sbjct: 521 HGMDPLS--EKFLSHTPIPY-------------------KDVAG---------SGKANVT 550

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
             + ++ R        Y+A D+  TL+L+  LK +L                +   Y+  
Sbjct: 551 FDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYERL 593

Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            +P   +L +ME+ G+ VDR+ LS +            +   + A +        N+GS 
Sbjct: 594 ERPLLPVLARMESRGITVDRQILSRLSGELAQGAAGLEDEIYRLAGER------FNIGSP 647

Query: 662 TQLRQLLFG 670
            QL  +LFG
Sbjct: 648 KQLGDILFG 656


>gi|56964474|ref|YP_176205.1| DNA polymerase I [Bacillus clausii KSM-K16]
 gi|56910717|dbj|BAD65244.1| DNA-directed DNA polymerase I [Bacillus clausii KSM-K16]
          Length = 877

 Score =  186 bits (471), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 113/311 (36%), Positives = 172/311 (55%), Gaps = 33/311 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVP-GNSLIVADY 874
            +  + G+VH   N   T+TGRLS+  PNLQN P   ++  KIR+AF+A   G  ++ ADY
Sbjct: 596  IDSETGKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRKAFVASKEGWKIVAADY 655

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++  + M +AF  G D H++TAM+++ H++    T  +            
Sbjct: 656  SQIELRVLAHISGDERMKEAFLTGMDIHTKTAMDVF-HVKREEVTDLM------------ 702

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                      RR AK +NF I YG +  GL++   ++ +EAK  +D +     +V  + E
Sbjct: 703  ----------RRSAKAVNFGIVYGISDYGLSQSLGITRKEAKDFIDRYLASYPQVKAYME 752

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               KE++   +V TLL R R  P +KS   +QR+  ER A+NTP+QG+AAD+   AM+++
Sbjct: 753  NVVKEAKEKGYVQTLLARRRYLPELKSRNFNQRSFAERTAMNTPIQGTAADIIKRAMVKM 812

Query: 1055 SKNARLKELGWK--LLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
            S+   L+E G K  +LLQVHDE+I E   +  E  + +V E M +       L V L VD
Sbjct: 813  SEA--LEETGLKANMLLQVHDELIFEVAPDDVEPLQELVTEVMEQAL----ELDVPLQVD 866

Query: 1113 AKCAQNWYSAK 1123
                 +W+ AK
Sbjct: 867  VSSGNSWFDAK 877


>gi|336065126|ref|YP_004559985.1| DNA polymerase I [Streptococcus pasteurianus ATCC 43144]
 gi|334283326|dbj|BAK30899.1| DNA polymerase I [Streptococcus pasteurianus ATCC 43144]
          Length = 878

 Score =  186 bits (471), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 177/335 (52%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ  +   ++G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VSKILEYRQIAKLQSTYIVGLQ--DFILQDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIA-VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+       L+ +DY Q+ELR+LAH++N + ++ AF+ G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF I YG +  GLA + 
Sbjct: 690  VF-----GIE--------KTEDVTP---------NDRRNAKAVNFGIVYGISDYGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +  + AK+ ++ ++     +  + E   ++++   +V TL  R R  P I S   + R 
Sbjct: 728  GIPRKVAKQYIETYFERYPGIKNYMERVVRDAKDKGYVETLFHRRRELPDINSRNFNIRQ 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + K     +   K+LLQVHDE+IL+ P +  E  K
Sbjct: 788  FAERTAINSPIQGSAADILKIAMINLDKALVDGQFKTKMLLQVHDEIILQVPKDELEAVK 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M        +L V L  D    Q WY AK
Sbjct: 848  TLVKETMESAI----DLSVPLIADENAGQTWYEAK 878


>gi|288906293|ref|YP_003431515.1| DNA polymerase I [Streptococcus gallolyticus UCN34]
 gi|325979307|ref|YP_004289023.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus ATCC
            BAA-2069]
 gi|386338734|ref|YP_006034903.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus ATCC
            43143]
 gi|288733019|emb|CBI14600.1| DNA polymerase I [Streptococcus gallolyticus UCN34]
 gi|325179235|emb|CBZ49279.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus ATCC
            BAA-2069]
 gi|334281370|dbj|BAK28944.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus ATCC
            43143]
          Length = 878

 Score =  186 bits (471), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 177/335 (52%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ  +   ++G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VSKILEYRQIAKLQSTYIVGLQ--DFILQDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIA-VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+       L+ +DY Q+ELR+LAH++N + ++ AF+ G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF I YG +  GLA + 
Sbjct: 690  VF-----GIE--------KTEDVTP---------NDRRNAKAVNFGIVYGISDYGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +  + AK+ ++ ++     +  + E   ++++   +V TL  R R  P I S   + R 
Sbjct: 728  GIPRKVAKQYIETYFERYPGIKNYMERVVRDAKDKGYVETLFHRRRELPDINSRNFNIRQ 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + K     +   K+LLQVHDE+IL+ P +  E  K
Sbjct: 788  FAERTAINSPIQGSAADILKIAMINLDKALVDGQFKTKMLLQVHDEIILQVPKDELEAVK 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M        +L V L  D    Q WY AK
Sbjct: 848  TLVKETMESAI----DLSVPLIADENAGQTWYEAK 878


>gi|430851663|ref|ZP_19469398.1| DNA polymerase I [Enterococcus faecium E1258]
 gi|430542245|gb|ELA82353.1| DNA polymerase I [Enterococcus faecium E1258]
          Length = 881

 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/348 (36%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAADV   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADVLKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|319945840|ref|ZP_08020090.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
 gi|417919540|ref|ZP_12563071.1| DNA-directed DNA polymerase [Streptococcus australis ATCC 700641]
 gi|319747905|gb|EFW00149.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
 gi|342832921|gb|EGU67210.1| DNA-directed DNA polymerase [Streptococcus australis ATCC 700641]
          Length = 881

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 182/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I S I  +  I  +Q + V G      ++G++H   +   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRYVQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + ++DAF+
Sbjct: 622  SVDPNLQNIPVRLEQGRL-IRKAFVPEEVNSVLLSSDYSQIELRVLAHISGDEHLIDAFQ 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                   +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------NIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  ++ ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         K+LLQVHDE++
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALEAGAYKTKMLLQVHDEIV 838

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            L+ P++     KA+V E M         L V L  D    + WY AK
Sbjct: 839  LQVPTDELAAIKALVKETMESAI----ELAVPLEADENEGKTWYEAK 881


>gi|423204492|ref|ZP_17191048.1| DNA polymerase I [Aeromonas veronii AMC34]
 gi|404626846|gb|EKB23654.1| DNA polymerase I [Aeromonas veronii AMC34]
          Length = 921

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 177/358 (49%), Gaps = 37/358 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  +    L E   +  L S +   LPL    +  + GRVH 
Sbjct: 596  KGAPSTAEEVLA---ELAETYELPQLLMEHRGLAKLKSTYTDKLPLM---IKPRTGRVHT 649

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 650  SYHQAVAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHL 709

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +L AF  G D H  TA  ++    +AV T                         R
Sbjct: 710  SGDKGLLTAFAEGKDIHKATAAEVFGVALDAVTTDM-----------------------R 746

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GLA+   +   EA+K +DL++     VL + E  ++++    +
Sbjct: 747  RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQAEAQGY 806

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKELG 1064
            V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R +++  
Sbjct: 807  VETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDSWIRGIEDES 866

Query: 1065 WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
             ++L+QVHDE++ E   E  E   AI+ E MS        L V L V+A    NW  A
Sbjct: 867  IRMLMQVHDELVFEIREEKLEEYTAIIKEKMS----AAAALHVPLLVEAGTGDNWDQA 920


>gi|38146965|gb|AAR11867.1| DNA polymerase I [Bacillus caldolyticus]
          Length = 878

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 172/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 603  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 662

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 663  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 699

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 700  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 759

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 760  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 817

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 818  KEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 873

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 874  WYDAK 878


>gi|375009844|ref|YP_004983477.1| DNA polymerase I [Geobacillus thermoleovorans CCB_US3_UF5]
 gi|359288693|gb|AEV20377.1| DNA polymerase I [Geobacillus thermoleovorans CCB_US3_UF5]
          Length = 876

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 172/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 601  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 660

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 661  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 697

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 698  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 757

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 758  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 815

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 816  KEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 871

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 872  WYDAK 876


>gi|210623711|ref|ZP_03293995.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
 gi|210153399|gb|EEA84405.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
          Length = 891

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 186/356 (52%), Gaps = 32/356 (8%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++N ++    ++     D I    ++  ++S     +  L    ++  +GR+H + 
Sbjct: 567  KTGYSTNAEVLEKLKDKHPIIDKIGEYRQIVKLNSTYVEGLTAL----INPIDGRIHSTF 622

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGR+S+  PNLQN P   +   ++R  F++     L+ ADY Q+ELR+LAH++ 
Sbjct: 623  NQTITTTGRISSTEPNLQNIPVRMEIGRRLRAVFVSDDEKRLVDADYSQVELRVLAHMSG 682

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
             ++M+DAFK G D H +TA  ++                       VP+ ++  +  R  
Sbjct: 683  DQNMIDAFKHGEDIHRKTASQVFN----------------------VPV-EEVTSELRSA 719

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF I YGKT  GL+ D  + V +AK+ ++ ++ + +++  + +   + +  D +  
Sbjct: 720  AKAVNFGIIYGKTDFGLSEDLNIPVPQAKQYIESYFAKYEKIKEFMDNIIETAEKDGYSQ 779

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T+  R R  P IKS    +RN  +RAA+N P+QGSAAD+   AM+ + +    +EL  KL
Sbjct: 780  TMFNRRRYIPEIKSKNFMERNRGKRAAMNAPIQGSAADIIKIAMVNVFRRLEKEELRSKL 839

Query: 1068 LLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +LQVHDE+I+E P +  E  + IV E M        +++V L+VD     +WY  K
Sbjct: 840  ILQVHDELIVETPIDELEKVEKIVREEMENAV----DMKVALTVDLNTGVSWYETK 891


>gi|56421265|ref|YP_148583.1| DNA polymerase I [Geobacillus kaustophilus HTA426]
 gi|56381107|dbj|BAD77015.1| DNA-directed DNA polymerase I [Geobacillus kaustophilus HTA426]
          Length = 878

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 172/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 603  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 662

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 663  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 699

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 700  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 759

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 760  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 817

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 818  KEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 873

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 874  WYDAK 878


>gi|378828278|ref|YP_005191010.1| DNA polymerase I [Sinorhizobium fredii HH103]
 gi|365181330|emb|CCE98185.1| K02335 DNA polymerase I [Sinorhizobium fredii HH103]
          Length = 1029

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/299 (37%), Positives = 154/299 (51%), Gaps = 26/299 (8%)

Query: 823  RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH    +  T TGRLS+  PNLQN P    +  KIR AFIA PG+ L+ ADY Q+ELR+
Sbjct: 751  RVHTGYALAATTTGRLSSSEPNLQNIPVRTAEGRKIRTAFIATPGHKLVSADYSQIELRV 810

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+                       VP+  D  
Sbjct: 811  LAHVADIPQLRQAFADGVDIHAMTASEMFG----------------------VPV--DGM 846

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E  K  +
Sbjct: 847  PSEIRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFA 906

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R   +V T+ GR   +P I+S   S R   ERA+IN P+QGSAAD+   AM+++      
Sbjct: 907  REHGYVETIFGRRAHYPDIRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALDE 966

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             +L  ++LLQVHDE+I E      E    ++V  M        ++RV L VDA+ AQNW
Sbjct: 967  AKLAARMLLQVHDELIFEVEESEIERTLPVIVSVMENAAMPALDMRVPLKVDARAAQNW 1025



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 97/251 (38%), Gaps = 61/251 (24%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           R+ L+      EDPS+ KV  N  +D  V++ +G+ +  F  DTM M+ + D+   T G 
Sbjct: 497 REALSRLKVLLEDPSVLKVAQNLKYDYLVMKRHGITLQSFD-DTMLMSYVVDAGNGTHGM 555

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
            SL                           E ++G   I  KD+ G          GK S
Sbjct: 556 DSLS--------------------------ERWLGHTPIPYKDVAG---------TGKAS 580

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
                 ++ R       +Y+A D+  TL+L+  LK +L              K +   Y+
Sbjct: 581 VSFDFVDIDRA-----TAYAAEDADVTLRLWHVLKPRL------------AAKGLTRVYE 623

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   +L  ME  G+ VDR+ LS +         A  +   + A       +   +G
Sbjct: 624 RLEKPLIAVLAHMEERGITVDRQILSRLSGELAQGAAALEDEIYRLA------GETFTIG 677

Query: 660 SDTQLRQLLFG 670
           S  QL  +LFG
Sbjct: 678 SPKQLGDILFG 688


>gi|144704831|gb|ABP02067.1| DNA polymerase [Bacillus caldolyticus]
          Length = 878

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 172/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 603  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 662

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 663  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 699

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 700  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 759

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 760  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 817

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 818  KEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 873

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 874  WYDAK 878


>gi|401681272|ref|ZP_10813176.1| DNA-directed DNA polymerase [Streptococcus sp. AS14]
 gi|400187069|gb|EJO21271.1| DNA-directed DNA polymerase [Streptococcus sp. AS14]
          Length = 880

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 178/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  S  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAS--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNS-LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+   G+S L+ +DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWGDSALLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  +  ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQVHDE++LE P++     +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  QLVKETMEAAI----ELAVPLVADENAGQTWYEAK 880


>gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
 gi|418363147|ref|ZP_12963742.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida 01-B526]
 gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
 gi|356685587|gb|EHI50229.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida 01-B526]
          Length = 918

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 178/358 (49%), Gaps = 37/358 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  +    L E  ++  L S +   LPL    +  + GRVH 
Sbjct: 593  KGAPSTAEEVLA---ELAETYELPRLLMEHRTLAKLKSTYTDKLPLM---IKPQTGRVHT 646

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 647  SYHQAVAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHL 706

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +L AF  G D H  TA  ++    +AV T                         R
Sbjct: 707  SGDKGLLTAFAEGKDIHKATAAEVFGVALDAVTTDM-----------------------R 743

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GLA+   +   EA+K +DL++     VL + E  ++++    +
Sbjct: 744  RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQAEAQGY 803

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKELG 1064
            V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R +++  
Sbjct: 804  VETLFGRRLYLPDIKSRNAGLRKGAERAAINAPMQGTAADIIKRAMINVDGWIRGIEDES 863

Query: 1065 WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
             ++L+QVHDE++ E   E  E   AI+ E MS        L V L V+A    NW  A
Sbjct: 864  IRMLMQVHDELVFEIREEKLEEYTAIIKEKMS----AAAELHVPLLVEAGTGDNWDQA 917


>gi|403237757|ref|ZP_10916343.1| DNA polymerase I [Bacillus sp. 10403023]
          Length = 876

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/323 (35%), Positives = 177/323 (54%), Gaps = 40/323 (12%)

Query: 812  LQGSNVSGKNGRVH---CSLNIN-----TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            LQ + + G    VH   C ++       T+TGRLS+  PNLQN P   ++  KIRQAF  
Sbjct: 583  LQSTYIEGLLKVVHEDTCKVHTRFQQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAF-- 640

Query: 864  VPGNS---LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETG 920
            VP      +  ADY Q+ELR+LAH+AN ++++ AF    D H++TAM+++ H++      
Sbjct: 641  VPSKKDWFMFAADYSQIELRVLAHIANDENLVHAFTNDLDIHTKTAMDVF-HVK------ 693

Query: 921  QVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVD 980
                    ED        +  ++ RR+AK +NF I YG +  GL+++  ++ +EA   ++
Sbjct: 694  --------ED--------EVTSNMRRQAKAVNFGIVYGISDFGLSQNLGITRKEAGHFIE 737

Query: 981  LWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQ 1040
             ++     V  + E   ++ R   +V TLL R R  P I +   + R+  ER A+NTP+Q
Sbjct: 738  RYFASFPGVKEYMEEIVEDVRQKGYVSTLLHRRRYIPEITARNFNVRSFAERTAMNTPIQ 797

Query: 1041 GSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFN 1100
            GSAAD+   AM++++   + ++L  KLLLQVHDE+I E P E  E+ K IV E M     
Sbjct: 798  GSAADIIKKAMIDMAARLKKEKLQAKLLLQVHDELIFEAPEEEIEILKQIVPEVMENAI- 856

Query: 1101 GKNNLRVDLSVDAKCAQNWYSAK 1123
               +L+V L VD    + WY AK
Sbjct: 857  ---SLKVPLKVDYSYGKTWYDAK 876


>gi|389868745|ref|YP_006376168.1| DNA-directed DNA polymerase I [Enterococcus faecium DO]
 gi|388533994|gb|AFK59186.1| DNA-directed DNA polymerase I [Enterococcus faecium DO]
          Length = 881

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|297583657|ref|YP_003699437.1| DNA polymerase I [Bacillus selenitireducens MLS10]
 gi|297142114|gb|ADH98871.1| DNA polymerase I [Bacillus selenitireducens MLS10]
          Length = 878

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 165/306 (53%), Gaps = 29/306 (9%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQL 877
            K G++H   N   T+TGRLS+  PNLQN P   ++  KIR+AF+ + PG+ L  ADY Q+
Sbjct: 600  KTGKIHTIFNQAVTQTGRLSSTEPNLQNIPVRLEEGRKIRRAFVPSKPGSKLFAADYSQI 659

Query: 878  ELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLL 937
            ELR+LAH++  ++++ AF+ G D H++TA +++    N V                    
Sbjct: 660  ELRVLAHISKDENLISAFQEGMDIHTKTASDVFGVKGNEVT------------------- 700

Query: 938  KDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARK 997
                A  RR AK +NF I YG +  GL+++  +S ++A+  +D ++     V T+ E   
Sbjct: 701  ----AEMRRTAKAVNFGIVYGISDYGLSQNLGISRKKAQTFIDKYFESYPGVKTYMEDIV 756

Query: 998  KESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKN 1057
             E+R   +V T+L R R  P + S   +QR+  ER A+NTP+QGSAAD+   AM++++  
Sbjct: 757  AEAREQGYVTTMLQRRRYLPDLTSRNFNQRSFAERTAMNTPIQGSAADIIKKAMVDMATE 816

Query: 1058 ARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQ 1117
               + L   +LLQVHDE+I E P +  E  + +V + M         L V L  D     
Sbjct: 817  LERQNLKSVMLLQVHDELIFEVPEDEIETMEKLVKDVMESTI----ELNVPLITDMATGD 872

Query: 1118 NWYSAK 1123
             WY AK
Sbjct: 873  TWYDAK 878


>gi|420143403|ref|ZP_14650902.1| DNA polymerase I [Lactococcus garvieae IPLA 31405]
 gi|391856671|gb|EIT67209.1| DNA polymerase I [Lactococcus garvieae IPLA 31405]
          Length = 871

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 176/346 (50%), Gaps = 37/346 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCSLNIN-TETGRLS 838
            A D +  L +   + + I  +  I  +Q + V G      ++GR+H     + T+TGRLS
Sbjct: 553  AADILENLAQDYELVAKILEYRQISKIQSTYVQGLIPQIAEDGRIHTRYVQDLTQTGRLS 612

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P  LE  R  IR+AF+A   N L+ +DY Q+ELR+LAH++  + ++DAF  
Sbjct: 613  SIDPNLQNIPVRLEAGRL-IRKAFVAAENNVLLSSDYSQIELRVLAHMSKDEHLIDAFNH 671

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TAM ++                   DKP     ++   ++RR AK +NF I+Y
Sbjct: 672  GADIHSSTAMRVF-----------------NIDKP-----ENVTPNDRRNAKAVNFGISY 709

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G+T  GLA+   +S +EA + +  ++     V  +    K+E++   +V T+  R R+ P
Sbjct: 710  GETEYGLAKRLSISNKEAAEMIQAYFERYPGVANYIAETKREAKDKGYVSTMFNRRRKLP 769

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVIL 1077
             I +     R   ER AIN P+QGSA D+   AM+ +       +   KLLLQVHDE+IL
Sbjct: 770  EINNRNFMVRQGAERQAINAPIQGSAGDILKIAMINLDAALSEGKFKAKLLLQVHDEIIL 829

Query: 1078 EGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            E P E     + +V + M         L V L  D     +WY AK
Sbjct: 830  EVPKEELTAVQTLVKQTMESAV----ELNVPLIADENTGDSWYEAK 871


>gi|322390655|ref|ZP_08064169.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 903]
 gi|321142628|gb|EFX38092.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 903]
          Length = 881

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 181/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I S I  +  I  +Q + V G      ++G++H   +   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRYVQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + ++DAFK
Sbjct: 622  SVDPNLQNIPVRLEQGRL-IRKAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFK 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                   +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------NIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  ++ ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         K+LLQVHDE++
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALERGAYKTKMLLQVHDEIV 838

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            L+ PS+     K +V E M         L V L  D    + WY AK
Sbjct: 839  LQVPSDELAAIKELVKETMESAI----ELAVPLEADENEGKTWYEAK 881


>gi|312622336|ref|YP_004023949.1| DNA polymerase i [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202803|gb|ADQ46130.1| DNA polymerase I [Caldicellulosiruptor kronotskyensis 2002]
          Length = 850

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 167/313 (53%), Gaps = 30/313 (9%)

Query: 812  LQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
            LQ  N S   GRVH + +   T TGRL++  PNLQN P    +   IR+ F+   G+ LI
Sbjct: 567  LQAINPSS--GRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEGGHVLI 624

Query: 871  VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
             ADY Q+ELRILAH++  + ++ AFK   D HS+TA  ++                 G D
Sbjct: 625  DADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVF-----------------GVD 667

Query: 931  KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVL 990
                  + D     R +AK +NF I YG +  GLARD K+S +EA + ++ ++    +V 
Sbjct: 668  ------IADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPKVK 721

Query: 991  TWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCA 1050
             + +   K +R +  V TL  R R    IKS  R+ R + ER A+N+P+QGSAAD+   A
Sbjct: 722  EYIDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLA 781

Query: 1051 MLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLS 1110
            M+++ +  +   L  K++LQVHDE+++E P E  ++ K IV   M         L+V L 
Sbjct: 782  MIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKEIVKREMENAV----TLKVPLV 837

Query: 1111 VDAKCAQNWYSAK 1123
            V+ K   NWY  K
Sbjct: 838  VEVKEGLNWYETK 850


>gi|425056059|ref|ZP_18459519.1| DNA-directed DNA polymerase [Enterococcus faecium 505]
 gi|403032458|gb|EJY44012.1| DNA-directed DNA polymerase [Enterococcus faecium 505]
          Length = 881

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|160914226|ref|ZP_02076447.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991]
 gi|158433853|gb|EDP12142.1| DNA-directed DNA polymerase [Eubacterium dolichum DSM 3991]
          Length = 861

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 167/305 (54%), Gaps = 28/305 (9%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            K+G++H   N I T+TGRLS+  PNLQN    +++   IR+AF+A P ++L+ ADY Q+E
Sbjct: 584  KDGKIHTIFNQIQTQTGRLSSSEPNLQNISVRDEEGKVIRKAFVASPQHTLMSADYSQIE 643

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+AN K+M+ AF  G D H++TAM ++    + V++                   
Sbjct: 644  LRMLAHMANEKTMIQAFNQGIDIHNQTAMQIFDVDHDHVDSNM----------------- 686

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG++  GL+    ++++EAK+ +D ++     + T+ +    
Sbjct: 687  ------RRSAKTVNFGIVYGQSDFGLSEQLGITMKEAKRFIDKYFASYPNIKTFMDDTIA 740

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
                + +V T+ GR R    I       R   +RAA+N P+QGSAAD+   AM+ I +  
Sbjct: 741  FCEENGYVKTMFGRRRYIKEINDKNYMMREFGKRAAMNAPIQGSAADLIKLAMVHIYQTM 800

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            + K++  +++LQ+HDE+I +   +  +  K IV + M +       LRV L  +A   + 
Sbjct: 801  KEKKVKSRMILQIHDELIFDVCDDELDTMKDIVEQGMQQAM----QLRVPLIAEASFGKT 856

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 857  WYDAK 861


>gi|416913|sp|Q04957.1|DPO1_BACCA RecName: Full=DNA polymerase I; Short=POL I
 gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax]
          Length = 877

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 172/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 602  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 661

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 662  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 698

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 699  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 758

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 759  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 816

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 817  KEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 872

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 873  WYDAK 877


>gi|424765986|ref|ZP_18193348.1| DNA-directed DNA polymerase [Enterococcus faecium TX1337RF]
 gi|430841379|ref|ZP_19459298.1| DNA polymerase I [Enterococcus faecium E1007]
 gi|431585969|ref|ZP_19520484.1| DNA polymerase I [Enterococcus faecium E1861]
 gi|402412993|gb|EJV45344.1| DNA-directed DNA polymerase [Enterococcus faecium TX1337RF]
 gi|430494155|gb|ELA70405.1| DNA polymerase I [Enterococcus faecium E1007]
 gi|430593147|gb|ELB31133.1| DNA polymerase I [Enterococcus faecium E1861]
          Length = 881

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|46203235|ref|ZP_00051830.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains
            [Magnetospirillum magnetotacticum MS-1]
          Length = 485

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 159/305 (52%), Gaps = 26/305 (8%)

Query: 820  KNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            +  RVH S ++  T TGRLS+  PNLQN P   ++  +IR+AF+A  G  LI ADY Q+E
Sbjct: 204  ETNRVHTSFSLAATTTGRLSSSEPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIE 263

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+A+   + +AF+ G D H+ TA  M+                       VPL  
Sbjct: 264  LRLLAHIADIPQLREAFEQGLDIHAATASAMFG----------------------VPL-- 299

Query: 939  DAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARK 997
            D    + RR+AK +NF I YG +  GLA    +  EEA   +  ++     +  + +  K
Sbjct: 300  DQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTK 359

Query: 998  KESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKN 1057
            K  R   +V TL GR   +P I+S   S+R  +ER AIN P+QG+AAD+   AM  +   
Sbjct: 360  KSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRAMTRMEAA 419

Query: 1058 ARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQ 1117
               K L  ++LLQVHDE++ E P +  E    ++ E M +       L V L V+A+ A 
Sbjct: 420  LEAKRLTARMLLQVHDELVFEVPDDEVEATIPVIAEVMEQAPAPALTLSVPLVVEARAAG 479

Query: 1118 NWYSA 1122
            NW  A
Sbjct: 480  NWEEA 484


>gi|431071631|ref|ZP_19494602.1| DNA polymerase I [Enterococcus faecium E1604]
 gi|430567264|gb|ELB06350.1| DNA polymerase I [Enterococcus faecium E1604]
          Length = 881

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|339499087|ref|YP_004697122.1| DNA polymerase I [Spirochaeta caldaria DSM 7334]
 gi|338833436|gb|AEJ18614.1| DNA polymerase I [Spirochaeta caldaria DSM 7334]
          Length = 984

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 187/348 (53%), Gaps = 35/348 (10%)

Query: 775  NNKIFATEQEAREACDAISA-LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINT 832
            +  +   E+ ARE  D + A +    ++  L S ++  L  ++ +G++GR+H   +   T
Sbjct: 665  STDVAVLEELARE--DPVPAYILRYRTLAKLKSTYVDTL--ADQAGRDGRLHTHFVQTGT 720

Query: 833  ETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSML 892
             TGRLS+R PNLQN P  +++  +IRQAF+A PG  LI ADY Q+EL +LAHL+    ++
Sbjct: 721  ATGRLSSRDPNLQNIPIRDEEGRRIRQAFVAEPGTLLISADYSQIELVVLAHLSQDPGLI 780

Query: 893  DAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASE-RRKAKML 951
            +AF  G D H RTA  ++                       VP  +D  +SE RR AK +
Sbjct: 781  EAFLKGVDVHRRTASLIFG----------------------VP--EDQVSSEQRRIAKTI 816

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF + YG +   L+ +  +S  EA+  ++ ++   + + ++ +   +E+    +  T+LG
Sbjct: 817  NFGVMYGMSAFRLSNELGISRTEAQTFINTYFTTYKGIRSFIDTTIQETERTGYSQTILG 876

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S  ++++   ER AINTP+QGSAAD+   AM+ + +  R K    ++LLQV
Sbjct: 877  RRRYIPTINSRNKTEKAAAERVAINTPIQGSAADIVKLAMIRLDRALRKKGNPAQMLLQV 936

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            HDE+ILE P   AE    +V E M +       LRV L V  +  + W
Sbjct: 937  HDELILECPEALAEETARLVKEEMEQAI----VLRVPLRVSVETGKRW 980


>gi|257884459|ref|ZP_05664112.1| DNA polymerase A [Enterococcus faecium 1,231,501]
 gi|431740030|ref|ZP_19528949.1| DNA polymerase I [Enterococcus faecium E2039]
 gi|257820297|gb|EEV47445.1| DNA polymerase A [Enterococcus faecium 1,231,501]
 gi|430604157|gb|ELB41657.1| DNA polymerase I [Enterococcus faecium E2039]
          Length = 881

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|431762027|ref|ZP_19550589.1| DNA polymerase I [Enterococcus faecium E3548]
 gi|430624719|gb|ELB61369.1| DNA polymerase I [Enterococcus faecium E3548]
          Length = 881

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVAP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|427396176|ref|ZP_18888935.1| DNA polymerase I [Enterococcus durans FB129-CNAB-4]
 gi|430860200|ref|ZP_19477804.1| DNA polymerase I [Enterococcus faecium E1573]
 gi|430949845|ref|ZP_19486068.1| DNA polymerase I [Enterococcus faecium E1576]
 gi|431006650|ref|ZP_19489115.1| DNA polymerase I [Enterococcus faecium E1578]
 gi|431253115|ref|ZP_19504441.1| DNA polymerase I [Enterococcus faecium E1623]
 gi|425722846|gb|EKU85737.1| DNA polymerase I [Enterococcus durans FB129-CNAB-4]
 gi|430552637|gb|ELA92365.1| DNA polymerase I [Enterococcus faecium E1573]
 gi|430557699|gb|ELA97145.1| DNA polymerase I [Enterococcus faecium E1576]
 gi|430561186|gb|ELB00463.1| DNA polymerase I [Enterococcus faecium E1578]
 gi|430578203|gb|ELB16773.1| DNA polymerase I [Enterococcus faecium E1623]
          Length = 881

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPKKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|387784882|ref|YP_006070965.1| DNA polymerase I [Streptococcus salivarius JIM8777]
 gi|338745764|emb|CCB96130.1| DNA polymerase I [Streptococcus salivarius JIM8777]
          Length = 879

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 185/337 (54%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H     + T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++    V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGFVETLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQVHDE++LE P++    
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQVHDEIVLEVPNDELVA 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             KA+V E M         L V L  D    + WY AK
Sbjct: 847  MKALVKETMEAAV----ELAVPLIADENDGRTWYEAK 879


>gi|400290935|ref|ZP_10792962.1| DNA polymerase I [Streptococcus ratti FA-1 = DSM 20564]
 gi|399921726|gb|EJN94543.1| DNA polymerase I [Streptococcus ratti FA-1 = DSM 20564]
          Length = 878

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 177/335 (52%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ +     + ++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQEA--VSFDDKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAV-PGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+   P + L+ +DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWPDSVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  +D ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIDTYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + K         ++LLQVHDE++LE P++  +  K
Sbjct: 788  FAERTAINSPIQGSAADILKVAMINLDKALMQGNYQARMLLQVHDEIVLEVPNKELKAVK 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  QLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|337283070|ref|YP_004622541.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
            15912]
 gi|335370663|gb|AEH56613.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
            15912]
          Length = 881

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 181/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCSLNIN-TETGRLS 838
            A D +  L  +  I S I  +  I  +Q + V G      ++G++H     + T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRYVQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + ++DAFK
Sbjct: 622  SVDPNLQNIPVRLEQGRL-IRKAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFK 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                   +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------NIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  ++ ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         K+LLQVHDE++
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALEAGAYKTKMLLQVHDEIV 838

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            L+ PS+     K +V E M         L V L  D    + WY AK
Sbjct: 839  LQVPSDELAAIKELVKETMESAI----ELAVPLEADENEGKTWYEAK 881


>gi|124262437|gb|ABM97416.1| DNA polymerase I [Bacillus sp. G(2006)]
          Length = 876

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 172/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 601  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 660

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 661  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 697

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 698  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 757

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 758  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 815

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 816  KEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGPT 871

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 872  WYDAK 876


>gi|347522454|ref|YP_004780025.1| DNA polymerase I [Lactococcus garvieae ATCC 49156]
 gi|343181022|dbj|BAK59361.1| DNA polymerase I [Lactococcus garvieae ATCC 49156]
          Length = 871

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 176/346 (50%), Gaps = 37/346 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L +   + + I  +  I  +Q + V G      ++GR+H   +   T+TGRLS
Sbjct: 553  AADILENLAQDYELVAKILEYRQISKIQSTYVQGLIPQIAEDGRIHTRYVQDLTQTGRLS 612

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P  LE  R  IR+AF+A   N L+ +DY Q+ELR+LAH++  + ++DAF  
Sbjct: 613  SIDPNLQNIPVRLEAGRL-IRKAFVAAENNILLSSDYSQIELRVLAHMSKDEHLIDAFNH 671

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TAM ++                   DKP     ++   ++RR AK +NF I+Y
Sbjct: 672  GADIHSSTAMRVF-----------------NIDKP-----ENVTPNDRRNAKAVNFGISY 709

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G+T  GLA+   +S +EA + +  ++     V  +    K+E++   +V T+  R R+ P
Sbjct: 710  GETEYGLAKRLSISNKEAAEMIQAYFERYPGVANYIAETKREAKDKGYVSTMFNRRRKLP 769

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVIL 1077
             I +     R   ER AIN P+QGSA D+   AM+ +       +   KLLLQVHDE+IL
Sbjct: 770  EINNRNFMVRQGAERQAINAPIQGSAGDILKIAMINLDAALSEGKFKAKLLLQVHDEIIL 829

Query: 1078 EGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            E P E     + +V + M         L V L  D     +WY AK
Sbjct: 830  EVPKEELTAVQTLVKQTMESAV----ELNVPLIADENTGDSWYEAK 871


>gi|430819965|ref|ZP_19438609.1| DNA polymerase I [Enterococcus faecium E0045]
 gi|430871241|ref|ZP_19483664.1| DNA polymerase I [Enterococcus faecium E1575]
 gi|430440168|gb|ELA50445.1| DNA polymerase I [Enterococcus faecium E0045]
 gi|430558198|gb|ELA97625.1| DNA polymerase I [Enterococcus faecium E1575]
          Length = 881

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|257878419|ref|ZP_05658072.1| DNA polymerase A [Enterococcus faecium 1,230,933]
 gi|257889382|ref|ZP_05669035.1| DNA polymerase A [Enterococcus faecium 1,231,410]
 gi|257894395|ref|ZP_05674048.1| DNA polymerase A [Enterococcus faecium 1,231,408]
 gi|260560008|ref|ZP_05832186.1| DNA polymerase A [Enterococcus faecium C68]
 gi|293559954|ref|ZP_06676462.1| DNA polymerase I [Enterococcus faecium E1162]
 gi|314937782|ref|ZP_07845099.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04]
 gi|314941672|ref|ZP_07848552.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C]
 gi|314950962|ref|ZP_07854029.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A]
 gi|314992964|ref|ZP_07858360.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B]
 gi|314996411|ref|ZP_07861454.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01]
 gi|383328868|ref|YP_005354752.1| DNA polymerase I [Enterococcus faecium Aus0004]
 gi|424792399|ref|ZP_18218636.1| DNA-directed DNA polymerase [Enterococcus faecium V689]
 gi|424834914|ref|ZP_18259599.1| DNA-directed DNA polymerase [Enterococcus faecium R501]
 gi|424869096|ref|ZP_18292819.1| DNA-directed DNA polymerase [Enterococcus faecium R497]
 gi|424953549|ref|ZP_18368501.1| DNA-directed DNA polymerase [Enterococcus faecium R494]
 gi|424963163|ref|ZP_18377427.1| DNA-directed DNA polymerase [Enterococcus faecium P1190]
 gi|424970235|ref|ZP_18383762.1| DNA-directed DNA polymerase [Enterococcus faecium P1139]
 gi|424973188|ref|ZP_18386477.1| DNA-directed DNA polymerase [Enterococcus faecium P1137]
 gi|424977744|ref|ZP_18390730.1| DNA-directed DNA polymerase [Enterococcus faecium P1123]
 gi|424980149|ref|ZP_18392963.1| DNA-directed DNA polymerase [Enterococcus faecium ERV99]
 gi|424985184|ref|ZP_18397676.1| DNA-directed DNA polymerase [Enterococcus faecium ERV69]
 gi|424987169|ref|ZP_18399558.1| DNA-directed DNA polymerase [Enterococcus faecium ERV38]
 gi|424990264|ref|ZP_18402481.1| DNA-directed DNA polymerase [Enterococcus faecium ERV26]
 gi|424995068|ref|ZP_18406966.1| DNA-directed DNA polymerase [Enterococcus faecium ERV168]
 gi|425006563|ref|ZP_18417735.1| DNA-directed DNA polymerase [Enterococcus faecium ERV1]
 gi|425015070|ref|ZP_18425711.1| DNA-directed DNA polymerase [Enterococcus faecium E417]
 gi|425019802|ref|ZP_18430142.1| DNA-directed DNA polymerase [Enterococcus faecium C497]
 gi|425027912|ref|ZP_18435164.1| DNA-directed DNA polymerase [Enterococcus faecium C1904]
 gi|425034752|ref|ZP_18439619.1| DNA-directed DNA polymerase [Enterococcus faecium 514]
 gi|425038455|ref|ZP_18443071.1| DNA-directed DNA polymerase [Enterococcus faecium 513]
 gi|425045985|ref|ZP_18450041.1| DNA-directed DNA polymerase [Enterococcus faecium 510]
 gi|425050292|ref|ZP_18454054.1| DNA-directed DNA polymerase [Enterococcus faecium 509]
 gi|425051333|ref|ZP_18455002.1| DNA-directed DNA polymerase [Enterococcus faecium 506]
 gi|425060976|ref|ZP_18464242.1| DNA-directed DNA polymerase [Enterococcus faecium 503]
 gi|430830710|ref|ZP_19448766.1| DNA polymerase I [Enterococcus faecium E0333]
 gi|430846043|ref|ZP_19463908.1| DNA polymerase I [Enterococcus faecium E1133]
 gi|431541897|ref|ZP_19518126.1| DNA polymerase I [Enterococcus faecium E1731]
 gi|431750122|ref|ZP_19538849.1| DNA polymerase I [Enterococcus faecium E2297]
 gi|431754813|ref|ZP_19543473.1| DNA polymerase I [Enterococcus faecium E2883]
 gi|431770810|ref|ZP_19559207.1| DNA polymerase I [Enterococcus faecium E1644]
 gi|431778779|ref|ZP_19566985.1| DNA polymerase I [Enterococcus faecium E4389]
 gi|431781905|ref|ZP_19570045.1| DNA polymerase I [Enterococcus faecium E6012]
 gi|257812647|gb|EEV41405.1| DNA polymerase A [Enterococcus faecium 1,230,933]
 gi|257825742|gb|EEV52368.1| DNA polymerase A [Enterococcus faecium 1,231,410]
 gi|257830774|gb|EEV57381.1| DNA polymerase A [Enterococcus faecium 1,231,408]
 gi|260073843|gb|EEW62167.1| DNA polymerase A [Enterococcus faecium C68]
 gi|291606042|gb|EFF35468.1| DNA polymerase I [Enterococcus faecium E1162]
 gi|313589393|gb|EFR68238.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01]
 gi|313592487|gb|EFR71332.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B]
 gi|313596817|gb|EFR75662.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A]
 gi|313599563|gb|EFR78406.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C]
 gi|313642813|gb|EFS07393.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04]
 gi|378938562|gb|AFC63634.1| DNA polymerase I [Enterococcus faecium Aus0004]
 gi|402917678|gb|EJX38432.1| DNA-directed DNA polymerase [Enterococcus faecium V689]
 gi|402921849|gb|EJX42268.1| DNA-directed DNA polymerase [Enterococcus faecium R501]
 gi|402936151|gb|EJX55349.1| DNA-directed DNA polymerase [Enterococcus faecium R497]
 gi|402938754|gb|EJX57735.1| DNA-directed DNA polymerase [Enterococcus faecium R494]
 gi|402950165|gb|EJX68177.1| DNA-directed DNA polymerase [Enterococcus faecium P1190]
 gi|402959227|gb|EJX76501.1| DNA-directed DNA polymerase [Enterococcus faecium P1137]
 gi|402962326|gb|EJX79279.1| DNA-directed DNA polymerase [Enterococcus faecium P1139]
 gi|402964613|gb|EJX81383.1| DNA-directed DNA polymerase [Enterococcus faecium P1123]
 gi|402966602|gb|EJX83222.1| DNA-directed DNA polymerase [Enterococcus faecium ERV69]
 gi|402967250|gb|EJX83822.1| DNA-directed DNA polymerase [Enterococcus faecium ERV99]
 gi|402974989|gb|EJX90981.1| DNA-directed DNA polymerase [Enterococcus faecium ERV38]
 gi|402978281|gb|EJX94036.1| DNA-directed DNA polymerase [Enterococcus faecium ERV168]
 gi|402979840|gb|EJX95487.1| DNA-directed DNA polymerase [Enterococcus faecium ERV26]
 gi|402996847|gb|EJY11208.1| DNA-directed DNA polymerase [Enterococcus faecium E417]
 gi|402997095|gb|EJY11445.1| DNA-directed DNA polymerase [Enterococcus faecium ERV1]
 gi|403004984|gb|EJY18735.1| DNA-directed DNA polymerase [Enterococcus faecium C1904]
 gi|403010747|gb|EJY24098.1| DNA-directed DNA polymerase [Enterococcus faecium C497]
 gi|403019435|gb|EJY32038.1| DNA-directed DNA polymerase [Enterococcus faecium 514]
 gi|403019560|gb|EJY32156.1| DNA-directed DNA polymerase [Enterococcus faecium 513]
 gi|403024238|gb|EJY36412.1| DNA-directed DNA polymerase [Enterococcus faecium 509]
 gi|403025870|gb|EJY37914.1| DNA-directed DNA polymerase [Enterococcus faecium 510]
 gi|403037855|gb|EJY49106.1| DNA-directed DNA polymerase [Enterococcus faecium 506]
 gi|403042084|gb|EJY53059.1| DNA-directed DNA polymerase [Enterococcus faecium 503]
 gi|430482299|gb|ELA59417.1| DNA polymerase I [Enterococcus faecium E0333]
 gi|430539863|gb|ELA80102.1| DNA polymerase I [Enterococcus faecium E1133]
 gi|430592944|gb|ELB30931.1| DNA polymerase I [Enterococcus faecium E1731]
 gi|430610595|gb|ELB47739.1| DNA polymerase I [Enterococcus faecium E2297]
 gi|430618641|gb|ELB55482.1| DNA polymerase I [Enterococcus faecium E2883]
 gi|430634701|gb|ELB70815.1| DNA polymerase I [Enterococcus faecium E1644]
 gi|430643440|gb|ELB79179.1| DNA polymerase I [Enterococcus faecium E4389]
 gi|430648306|gb|ELB83713.1| DNA polymerase I [Enterococcus faecium E6012]
          Length = 881

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|227551619|ref|ZP_03981668.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257887242|ref|ZP_05666895.1| DNA polymerase A [Enterococcus faecium 1,141,733]
 gi|257895778|ref|ZP_05675431.1| DNA polymerase A [Enterococcus faecium Com12]
 gi|293377607|ref|ZP_06623796.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1]
 gi|431032969|ref|ZP_19490815.1| DNA polymerase I [Enterococcus faecium E1590]
 gi|431737600|ref|ZP_19526553.1| DNA polymerase I [Enterococcus faecium E1972]
 gi|431751985|ref|ZP_19540671.1| DNA polymerase I [Enterococcus faecium E2620]
 gi|227179296|gb|EEI60268.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257823296|gb|EEV50228.1| DNA polymerase A [Enterococcus faecium 1,141,733]
 gi|257832343|gb|EEV58764.1| DNA polymerase A [Enterococcus faecium Com12]
 gi|292643607|gb|EFF61728.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1]
 gi|430564070|gb|ELB03254.1| DNA polymerase I [Enterococcus faecium E1590]
 gi|430598687|gb|ELB36422.1| DNA polymerase I [Enterococcus faecium E1972]
 gi|430614594|gb|ELB51574.1| DNA polymerase I [Enterococcus faecium E2620]
          Length = 881

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|69246664|ref|ZP_00604054.1| DNA polymerase A [Enterococcus faecium DO]
 gi|68195138|gb|EAN09596.1| DNA polymerase A [Enterococcus faecium DO]
          Length = 868

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 549  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 608

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 609  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 668

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 669  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 706

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 707  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 766

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 767  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 824

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 825  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 868


>gi|406580958|ref|ZP_11056143.1| DNA polymerase I [Enterococcus sp. GMD4E]
 gi|406583127|ref|ZP_11058218.1| DNA polymerase I [Enterococcus sp. GMD3E]
 gi|406585545|ref|ZP_11060532.1| DNA polymerase I [Enterococcus sp. GMD2E]
 gi|406590632|ref|ZP_11064992.1| DNA polymerase I [Enterococcus sp. GMD1E]
 gi|410937197|ref|ZP_11369058.1| DNA polymerase I [Enterococcus sp. GMD5E]
 gi|404453334|gb|EKA00399.1| DNA polymerase I [Enterococcus sp. GMD4E]
 gi|404457102|gb|EKA03676.1| DNA polymerase I [Enterococcus sp. GMD3E]
 gi|404462560|gb|EKA08292.1| DNA polymerase I [Enterococcus sp. GMD2E]
 gi|404469060|gb|EKA13898.1| DNA polymerase I [Enterococcus sp. GMD1E]
 gi|410734308|gb|EKQ76228.1| DNA polymerase I [Enterococcus sp. GMD5E]
          Length = 881

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|314948920|ref|ZP_07852289.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082]
 gi|313644710|gb|EFS09290.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082]
          Length = 881

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130]
 gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130]
          Length = 978

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 160/307 (52%), Gaps = 24/307 (7%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++   GRVH S  + +T TGR S+  PNLQN P   +   KIR AFIA  G+ L+ ADY 
Sbjct: 694  INKTTGRVHTSYAMASTTTGRFSSSEPNLQNIPVRTEAGRKIRTAFIAADGHKLVSADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+           V +E  G D     
Sbjct: 754  QIELRVLAHMADISQLKQAFADGIDIHAMTASEMF----------NVPVE--GMDP---- 797

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                   S RR+AK +NF I YG +  GLA +  +   EA   + +++     +  + + 
Sbjct: 798  -------SIRRQAKAINFGIIYGISAFGLANNLGIDRGEASDYIKMYFERFPGIRDYMDE 850

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             KK +R   +V T+ GR   +P IKS     R   ERAAIN P+QGSAAD+   AM  + 
Sbjct: 851  TKKFAREHGYVETIFGRRAHYPEIKSSNPQMRAFNERAAINAPIQGSAADIIRRAMARME 910

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
                 ++L  ++LLQVHDE+I E P +  +     VV+ M        +L V L VDA+ 
Sbjct: 911  GALAAEKLSAQMLLQVHDELIFEVPDDEVDATIETVVKVMEDAPMPALSLSVPLQVDARA 970

Query: 1116 AQNWYSA 1122
            A+NW  A
Sbjct: 971  AENWDEA 977



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 157/387 (40%), Gaps = 104/387 (26%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSC----------------IWV 414
           A DTE   +D          +++  S+ +GP      G++C                ++ 
Sbjct: 388 AVDTETTSLDAMA------CDLVGVSLATGP------GRACYIPLAHLKDGSSDDGDMFS 435

Query: 415 DLLDGGGRDLLNEFA---PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
           + LD    DL    A   P  E PS+ K+  N  +D  VL  YG++V  F  DTM ++ +
Sbjct: 436 EGLDPDQMDLKEALALLKPMLEAPSVLKIAQNLKYDWLVLSRYGIEVGPFD-DTMLLSYV 494

Query: 472 WDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
            D+ R   G + ++AL                  S  + D      I  K++ G  K   
Sbjct: 495 LDAGR---GKHGMDAL------------------SLAHLDHT---PIPFKEVAGSGK--- 527

Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG 591
                   ++   +++  E+     +Y+A D+  TL+L+  LK +L+             
Sbjct: 528 --------SMVTFDKVSIEKAS---AYAAEDADVTLRLWTLLKARLV------------A 564

Query: 592 KSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCP 651
           + M   Y+   +P   +L +ME  G+ +DR+ LS +     A++ A +      A  H  
Sbjct: 565 EKMVTVYERLERPLVPVLCRMEARGVEIDRQILSRLSG-ELAQKAAGIE-----ADIHEM 618

Query: 652 DAKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSK 706
             + +N+ S  QL +LLFG     G   +K    +   + +      E + AEG + P +
Sbjct: 619 AGEPINIASPKQLGELLFGKMELPGGKKTKTGQWATGAQAL------EDLAAEGHELPRR 672

Query: 707 F---RNIT-LRSIGVD-LPTEMYTATG 728
               R +T L+S   D LPT +   TG
Sbjct: 673 IVDWRQLTKLKSTYTDALPTFINKTTG 699


>gi|94993561|ref|YP_601659.1| DNA polymerase I [Streptococcus pyogenes MGAS10750]
 gi|94547069|gb|ABF37115.1| DNA polymerase I [Streptococcus pyogenes MGAS10750]
          Length = 880

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 183/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  K ++ AF 
Sbjct: 621  SVDPNLQNIPIRLEQGRL-IRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDKHLIAAFN 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK       D  A++RR AK +NF I 
Sbjct: 680  EGADIHTSTAMRVF-----------------GIDKAA-----DVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  +      K+LLQVHDE++
Sbjct: 778  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIV 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P++     K +V + M        +L V L VD    Q+WY AK
Sbjct: 838  LEVPNDELTAIKKLVKDTMEAAV----DLAVPLCVDESTGQSWYEAK 880


>gi|37702659|gb|AAR00931.1|U86402_1 DNA polymerase I [Bacillus subtilis]
          Length = 880

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 182/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCSLN-INTETGRL 837
            + D +  L +   I   I  +  I  LQ + + G        + +VH   N   T+TGRL
Sbjct: 561  SADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTGRL 620

Query: 838  SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFK 896
            S+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF 
Sbjct: 621  SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFT 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
               D H++TAM+++   ++ V +                         RR+AK +NF I 
Sbjct: 681  NDMDIHTKTAMDVFHVAKDEVTSAM-----------------------RRQAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+++  ++ +EA   +D +    Q V  + E   +E++   +V TL+ R R  
Sbjct: 718  YGISDYGLSQNLGITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYI 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P + S   + R+  ER A+NTP+QGSAAD+   AM++++   + K+L  +LLLQVHDE+I
Sbjct: 778  PELTSRNFNIRSFAERTAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELI 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E P E  E+ + +V E M         L V L VD     +WY AK
Sbjct: 838  FEAPKEEIEILEKLVPEVMEHAL----ALDVPLKVDFASGPSWYDAK 880


>gi|431756801|ref|ZP_19545433.1| DNA polymerase I [Enterococcus faecium E3083]
 gi|430620655|gb|ELB57457.1| DNA polymerase I [Enterococcus faecium E3083]
          Length = 881

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVGDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310850|ref|ZP_03592697.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315176|ref|ZP_03596981.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320093|ref|ZP_03601387.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324375|ref|ZP_03605669.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SMY]
 gi|402777064|ref|YP_006631008.1| DNA polymerase I [Bacillus subtilis QB928]
 gi|452915628|ref|ZP_21964254.1| DNA polymerase I [Bacillus subtilis MB73/2]
 gi|6015001|sp|O34996.1|DPO1_BACSU RecName: Full=DNA polymerase I; Short=POL I
 gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis]
 gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|402482244|gb|AFQ58753.1| DNA polymerase I [Bacillus subtilis QB928]
 gi|407960917|dbj|BAM54157.1| DNA polymerase I [Bacillus subtilis BEST7613]
 gi|407965747|dbj|BAM58986.1| DNA polymerase I [Bacillus subtilis BEST7003]
 gi|452115976|gb|EME06372.1| DNA polymerase I [Bacillus subtilis MB73/2]
          Length = 880

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 182/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCSLN-INTETGRL 837
            + D +  L +   I   I  +  I  LQ + + G        + +VH   N   T+TGRL
Sbjct: 561  SADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTGRL 620

Query: 838  SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFK 896
            S+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF 
Sbjct: 621  SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFT 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
               D H++TAM+++   ++ V +                         RR+AK +NF I 
Sbjct: 681  NDMDIHTKTAMDVFHVAKDEVTSAM-----------------------RRQAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+++  ++ +EA   +D +    Q V  + E   +E++   +V TL+ R R  
Sbjct: 718  YGISDYGLSQNLGITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYI 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P + S   + R+  ER A+NTP+QGSAAD+   AM++++   + K+L  +LLLQVHDE+I
Sbjct: 778  PELTSRNFNIRSFAERTAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELI 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E P E  E+ + +V E M         L V L VD     +WY AK
Sbjct: 838  FEAPKEEIEILEKLVPEVMEHAL----ALDVPLKVDFASGPSWYDAK 880


>gi|332799559|ref|YP_004461058.1| DNA polymerase I [Tepidanaerobacter acetatoxydans Re1]
 gi|332697294|gb|AEE91751.1| DNA polymerase I [Tepidanaerobacter acetatoxydans Re1]
          Length = 864

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/308 (37%), Positives = 161/308 (52%), Gaps = 35/308 (11%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA-VPGNSLIVADY 874
            V  K GR++ S N   T TGR+S+  PNLQN P   ++   IR  F +  PG+ L+  DY
Sbjct: 584  VDKKTGRIYTSFNQTVTSTGRISSTEPNLQNIPVKTEEGKHIRGVFTSDGPGHVLLSGDY 643

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP- 933
             Q+ELR+LAH++    +++AF +G D H RTA  ++                     PP 
Sbjct: 644  SQIELRVLAHMSQDPGLIEAFVSGEDIHRRTASEVF-------------------GVPPE 684

Query: 934  --VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLT 991
               PLL+D       KAK +NF I YG +  GLA++  +S +EAK+ +D ++     V  
Sbjct: 685  EVTPLLRD-------KAKAVNFGIIYGISDYGLAQNLGISNQEAKEYIDAYFARYPGVRD 737

Query: 992  WQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAM 1051
            +     + ++   +V TLL R R  P I S     R+  ER A+NTP+QGSAAD+   AM
Sbjct: 738  YIRETIRSAKALGYVTTLLNRRRYIPDINSRNYHLRSFAERTAVNTPIQGSAADIIKIAM 797

Query: 1052 LEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSV 1111
            +++  N R   L  K+LLQVHDE+IL+ P E     K I+ + M         LRV L V
Sbjct: 798  VKVHDNLRQNNLKAKILLQVHDELILDVPEEELTAVKEILKQHMENAI----PLRVPLVV 853

Query: 1112 DAKCAQNW 1119
            D K   NW
Sbjct: 854  DFKQGYNW 861


>gi|430844042|ref|ZP_19461940.1| DNA polymerase I [Enterococcus faecium E1050]
 gi|430496632|gb|ELA72691.1| DNA polymerase I [Enterococcus faecium E1050]
          Length = 881

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|321312443|ref|YP_004204730.1| DNA polymerase I [Bacillus subtilis BSn5]
 gi|320018717|gb|ADV93703.1| DNA polymerase I [Bacillus subtilis BSn5]
          Length = 880

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 182/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCSLN-INTETGRL 837
            + D +  L +   I   I  +  I  LQ + + G        + +VH   N   T+TGRL
Sbjct: 561  SADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTGRL 620

Query: 838  SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFK 896
            S+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF 
Sbjct: 621  SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFT 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
               D H++TAM+++   ++ V +                         RR+AK +NF I 
Sbjct: 681  NDMDIHTKTAMDVFHVAKDEVTSAM-----------------------RRQAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+++  ++ +EA   +D +    Q V  + E   +E++   +V TL+ R R  
Sbjct: 718  YGISDYGLSQNLGITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYI 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P + S   + R+  ER A+NTP+QGSAAD+   AM++++   + K+L  +LLLQVHDE+I
Sbjct: 778  PELTSRNFNIRSFAERTAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELI 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E P E  E+ + +V E M         L V L VD     +WY AK
Sbjct: 838  FEAPKEEIEILEKLVPEVMEHAL----ALDVPLKVDFASGPSWYDAK 880


>gi|389693269|ref|ZP_10181363.1| DNA polymerase I [Microvirga sp. WSM3557]
 gi|388586655|gb|EIM26948.1| DNA polymerase I [Microvirga sp. WSM3557]
          Length = 1019

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 164/301 (54%), Gaps = 24/301 (7%)

Query: 823  RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++  T TGRLS+  PNLQN P   +   KIR+AF+A  G+ +I ADY Q+ELR+
Sbjct: 741  RVHTSFSLAATTTGRLSSSDPNLQNIPIRTEAGRKIRKAFVAQEGHKIISADYSQIELRL 800

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   + +AF  G D H+ TA  M+         G  L +  G+            
Sbjct: 801  LAHIADIPQLQEAFAQGIDIHAATASAMF---------GVPLDQMTGD------------ 839

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +  +EA   +  ++     + T+ +  K+  +
Sbjct: 840  --LRRQAKTINFGIIYGISAFGLATRLGIPNQEASAFIKQYFERFPGIRTYIDETKRFCK 897

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V TL GR   +P IKS   S+R  +ER AIN P+QG+AAD+   AM+ +    + +
Sbjct: 898  EKGYVTTLFGRVCHYPQIKSSNPSERAGVERQAINAPIQGTAADIIRRAMVRMEDALKAE 957

Query: 1062 ELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYS 1121
             L  ++LLQVHDE++ E P +  +    ++   M++      +L+V L+V+A+ AQNW  
Sbjct: 958  RLSARMLLQVHDELVFEVPDDEVDATLPVISRVMTEAPFPAVSLKVPLAVEARAAQNWDE 1017

Query: 1122 A 1122
            A
Sbjct: 1018 A 1018


>gi|385833838|ref|YP_005871613.1| DNA polymerase I [Lactococcus garvieae Lg2]
 gi|343182991|dbj|BAK61329.1| DNA polymerase I [Lactococcus garvieae Lg2]
          Length = 871

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 176/346 (50%), Gaps = 37/346 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L +   + + I  +  I  +Q + V G      ++GR+H   +   T+TGRLS
Sbjct: 553  AADILENLAQDYELVAKILEYRQISKIQSTYVQGLIPQIAEDGRIHTRYVQDLTQTGRLS 612

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P  LE  R  IR+AF+A   N L+ +DY Q+ELR+LAH++  + ++DAF  
Sbjct: 613  SIDPNLQNIPVRLEAGRL-IRKAFVAAENNILLSSDYSQIELRVLAHMSKDEHLIDAFNH 671

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TAM ++                   DKP     ++   ++RR AK +NF I+Y
Sbjct: 672  GADIHSSTAMRVF-----------------NIDKP-----ENVTPNDRRNAKAVNFGISY 709

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G+T  GLA+   +S +EA + +  ++     V  +    K+E++   +V T+  R R+ P
Sbjct: 710  GETEYGLAKRLSISNKEAAEMIQAYFERYPGVANYIAETKREAKDKGYVSTMFNRRRKLP 769

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVIL 1077
             I +     R   ER AIN P+QGSA D+   AM+ +       +   KLLLQVHDE+IL
Sbjct: 770  EINNRNFMVRQGAERQAINAPIQGSAGDILKIAMINLDAALSEGKFKAKLLLQVHDEIIL 829

Query: 1078 EGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            E P E     + +V + M         L V L  D     +WY AK
Sbjct: 830  EVPKEELTAVQTLVKQTMESAV----ELNVPLIADENTGDSWYEAK 871


>gi|257882837|ref|ZP_05662490.1| DNA polymerase A [Enterococcus faecium 1,231,502]
 gi|261207884|ref|ZP_05922569.1| DNA polymerase A [Enterococcus faecium TC 6]
 gi|289566952|ref|ZP_06447356.1| DNA polymerase I [Enterococcus faecium D344SRF]
 gi|293569014|ref|ZP_06680327.1| DNA polymerase I [Enterococcus faecium E1071]
 gi|294623286|ref|ZP_06702151.1| DNA polymerase I [Enterococcus faecium U0317]
 gi|415897516|ref|ZP_11551091.1| DNA polymerase I [Enterococcus faecium E4453]
 gi|416134169|ref|ZP_11598225.1| DNA polymerase I [Enterococcus faecium E4452]
 gi|424802660|ref|ZP_18228137.1| DNA-directed DNA polymerase [Enterococcus faecium S447]
 gi|424859604|ref|ZP_18283595.1| DNA-directed DNA polymerase [Enterococcus faecium R499]
 gi|424950746|ref|ZP_18365895.1| DNA-directed DNA polymerase [Enterococcus faecium R496]
 gi|424955612|ref|ZP_18370438.1| DNA-directed DNA polymerase [Enterococcus faecium R446]
 gi|424960444|ref|ZP_18374959.1| DNA-directed DNA polymerase [Enterococcus faecium P1986]
 gi|424967008|ref|ZP_18380749.1| DNA-directed DNA polymerase [Enterococcus faecium P1140]
 gi|424996914|ref|ZP_18408698.1| DNA-directed DNA polymerase [Enterococcus faecium ERV165]
 gi|425000768|ref|ZP_18412316.1| DNA-directed DNA polymerase [Enterococcus faecium ERV161]
 gi|425005270|ref|ZP_18416528.1| DNA-directed DNA polymerase [Enterococcus faecium ERV102]
 gi|425012303|ref|ZP_18423127.1| DNA-directed DNA polymerase [Enterococcus faecium E422]
 gi|425016752|ref|ZP_18427297.1| DNA-directed DNA polymerase [Enterococcus faecium C621]
 gi|425032068|ref|ZP_18437156.1| DNA-directed DNA polymerase [Enterococcus faecium 515]
 gi|425041835|ref|ZP_18446215.1| DNA-directed DNA polymerase [Enterococcus faecium 511]
 gi|430822524|ref|ZP_19441102.1| DNA polymerase I [Enterococcus faecium E0120]
 gi|430854810|ref|ZP_19472522.1| DNA polymerase I [Enterococcus faecium E1392]
 gi|430865084|ref|ZP_19480842.1| DNA polymerase I [Enterococcus faecium E1574]
 gi|431229779|ref|ZP_19501982.1| DNA polymerase I [Enterococcus faecium E1622]
 gi|431370132|ref|ZP_19509831.1| DNA polymerase I [Enterococcus faecium E1627]
 gi|431743133|ref|ZP_19532014.1| DNA polymerase I [Enterococcus faecium E2071]
 gi|431767188|ref|ZP_19555643.1| DNA polymerase I [Enterococcus faecium E1321]
 gi|431772268|ref|ZP_19560610.1| DNA polymerase I [Enterococcus faecium E2369]
 gi|431775792|ref|ZP_19564062.1| DNA polymerase I [Enterococcus faecium E2560]
 gi|431785718|ref|ZP_19573741.1| DNA polymerase I [Enterococcus faecium E6045]
 gi|447912576|ref|YP_007393988.1| DNA polymerase I [Enterococcus faecium NRRL B-2354]
 gi|257818495|gb|EEV45823.1| DNA polymerase A [Enterococcus faecium 1,231,502]
 gi|260078267|gb|EEW65973.1| DNA polymerase A [Enterococcus faecium TC 6]
 gi|289161251|gb|EFD09147.1| DNA polymerase I [Enterococcus faecium D344SRF]
 gi|291588447|gb|EFF20282.1| DNA polymerase I [Enterococcus faecium E1071]
 gi|291597314|gb|EFF28500.1| DNA polymerase I [Enterococcus faecium U0317]
 gi|364090535|gb|EHM33107.1| DNA polymerase I [Enterococcus faecium E4453]
 gi|364092681|gb|EHM35029.1| DNA polymerase I [Enterococcus faecium E4452]
 gi|402919379|gb|EJX39985.1| DNA-directed DNA polymerase [Enterococcus faecium S447]
 gi|402926267|gb|EJX46318.1| DNA-directed DNA polymerase [Enterococcus faecium R499]
 gi|402932544|gb|EJX52043.1| DNA-directed DNA polymerase [Enterococcus faecium R496]
 gi|402947722|gb|EJX65914.1| DNA-directed DNA polymerase [Enterococcus faecium P1986]
 gi|402948261|gb|EJX66414.1| DNA-directed DNA polymerase [Enterococcus faecium R446]
 gi|402955275|gb|EJX72817.1| DNA-directed DNA polymerase [Enterococcus faecium P1140]
 gi|402986673|gb|EJY01785.1| DNA-directed DNA polymerase [Enterococcus faecium ERV102]
 gi|402987448|gb|EJY02510.1| DNA-directed DNA polymerase [Enterococcus faecium ERV165]
 gi|402988506|gb|EJY03509.1| DNA-directed DNA polymerase [Enterococcus faecium ERV161]
 gi|402993760|gb|EJY08348.1| DNA-directed DNA polymerase [Enterococcus faecium E422]
 gi|403006192|gb|EJY19856.1| DNA-directed DNA polymerase [Enterococcus faecium C621]
 gi|403014048|gb|EJY27068.1| DNA-directed DNA polymerase [Enterococcus faecium 515]
 gi|403025334|gb|EJY37420.1| DNA-directed DNA polymerase [Enterococcus faecium 511]
 gi|430443101|gb|ELA53098.1| DNA polymerase I [Enterococcus faecium E0120]
 gi|430547689|gb|ELA87605.1| DNA polymerase I [Enterococcus faecium E1392]
 gi|430553162|gb|ELA92863.1| DNA polymerase I [Enterococcus faecium E1574]
 gi|430573765|gb|ELB12543.1| DNA polymerase I [Enterococcus faecium E1622]
 gi|430583879|gb|ELB22237.1| DNA polymerase I [Enterococcus faecium E1627]
 gi|430607497|gb|ELB44817.1| DNA polymerase I [Enterococcus faecium E2071]
 gi|430631196|gb|ELB67519.1| DNA polymerase I [Enterococcus faecium E1321]
 gi|430638132|gb|ELB74109.1| DNA polymerase I [Enterococcus faecium E2369]
 gi|430642440|gb|ELB78218.1| DNA polymerase I [Enterococcus faecium E2560]
 gi|430646877|gb|ELB82338.1| DNA polymerase I [Enterococcus faecium E6045]
 gi|445188285|gb|AGE29927.1| DNA polymerase I [Enterococcus faecium NRRL B-2354]
          Length = 881

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|428280385|ref|YP_005562120.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195]
 gi|291485342|dbj|BAI86417.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195]
          Length = 880

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 182/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCSLN-INTETGRL 837
            + D +  L +   I   I  +  I  LQ + + G        + +VH   N   T+TGRL
Sbjct: 561  SADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTGRL 620

Query: 838  SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFK 896
            S+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF 
Sbjct: 621  SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFT 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
               D H++TAM+++   ++ V +                         RR+AK +NF I 
Sbjct: 681  NDMDIHTKTAMDVFHVAKDEVTSAM-----------------------RRQAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+++  ++ +EA   +D +    Q V  + E   +E++   +V TL+ R R  
Sbjct: 718  YGISDYGLSQNLGITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYI 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P + S   + R+  ER A+NTP+QGSAAD+   AM++++   + K+L  +LLLQVHDE+I
Sbjct: 778  PELTSRNFNIRSFAERTAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELI 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E P E  E+ + +V E M         L V L VD     +WY AK
Sbjct: 838  FEAPKEEIEILEKLVPEVMEHAL----ALDVPLKVDFASGPSWYDAK 880


>gi|431294039|ref|ZP_19506913.1| DNA polymerase I [Enterococcus faecium E1626]
 gi|430581632|gb|ELB20071.1| DNA polymerase I [Enterococcus faecium E1626]
          Length = 881

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|418031906|ref|ZP_12670389.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SC-8]
 gi|351470769|gb|EHA30890.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SC-8]
          Length = 880

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 182/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCSLN-INTETGRL 837
            + D +  L +   I   I  +  I  LQ + + G        + +VH   N   T+TGRL
Sbjct: 561  SADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTGRL 620

Query: 838  SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFK 896
            S+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF 
Sbjct: 621  SSTYPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFT 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
               D H++TAM+++   ++ V +                         RR+AK +NF I 
Sbjct: 681  NDMDIHTKTAMDVFHVAKDEVTSAM-----------------------RRQAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+++  ++ +EA   +D +    Q V  + E   +E++   +V TL+ R R  
Sbjct: 718  YGISDYGLSQNLGITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYI 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P + S   + R+  ER A+NTP+QGSAAD+   AM++++   + K+L  +LLLQVHDE+I
Sbjct: 778  PELTSRNFNIRSFAERTAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELI 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E P E  E+ + +V E M         L V L VD     +WY AK
Sbjct: 838  FEAPKEEIEILEKLVPEVMEHAL----ALDVPLKVDFASGPSWYDAK 880


>gi|163790757|ref|ZP_02185183.1| DNA polymerase I [Carnobacterium sp. AT7]
 gi|159873937|gb|EDP68015.1| DNA polymerase I [Carnobacterium sp. AT7]
          Length = 886

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/347 (35%), Positives = 184/347 (53%), Gaps = 37/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCS-LNINTETGRL 837
            A D +  L E   I   I  +  I  +Q + + G       + G++H   +    +TGRL
Sbjct: 566  AVDVLEQLKEQAPIVEHILEYRQIAKIQSTYIEGLLKVIDKETGKIHTRYMQTIAQTGRL 625

Query: 838  SARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFK 896
            S+  PNLQN P   ++  KIRQAF+ +  G  +  +DY Q+ELR+L H++N K + +AF 
Sbjct: 626  SSVDPNLQNIPIRLEEGRKIRQAFVPSHEGWKIFASDYSQIELRVLGHVSNDKLLKEAFI 685

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D HS TAM ++                 G   P     ++  +  RR+AK +NF I 
Sbjct: 686  EGQDIHSSTAMRVF-----------------GISSP-----EEVSSEMRRRAKAVNFGIV 723

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+++  +S +EA++ +D ++ +   V T+ E   +E++    V TL  R R  
Sbjct: 724  YGISDYGLSQNLGISRKEAQRFIDTYFEKYPGVKTYMEDIVREAKDKGFVETLFHRRRYL 783

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AINTP+QGSAAD+   AM+++ +  +  +L   +LLQVHDE+I
Sbjct: 784  PEINSRNFNLRSFAERTAINTPIQGSAADIIKIAMIKMDERLKESKLKATMLLQVHDELI 843

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E P E  E  KA+VVE M     G   L V L VD+   ++WY AK
Sbjct: 844  FEAPEEEIEELKALVVEVME----GAVELSVPLKVDSNSGKSWYEAK 886


>gi|387878650|ref|YP_006308953.1| DNA polymerase I [Streptococcus parasanguinis FW213]
 gi|386792107|gb|AFJ25142.1| DNA polymerase I [Streptococcus parasanguinis FW213]
          Length = 894

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 181/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCSLNIN-TETGRLS 838
            A D +  L  +  I S I  +  I  +Q + V G      ++G++H     + T+TGRLS
Sbjct: 575  AVDVLGRLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRYVQDLTQTGRLS 634

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + ++DAFK
Sbjct: 635  SVDPNLQNIPVRLEQGRL-IRKAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFK 693

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                   +KP     +D   ++RR AK +NF + 
Sbjct: 694  HGADIHTSTAMRVF-----------------NIEKP-----EDVTPNDRRNAKAVNFGVV 731

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  ++ ++     +  + E   +E+R   +V TL  R R  
Sbjct: 732  YGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREI 791

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         K+LLQVHDE++
Sbjct: 792  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALERGAYKTKMLLQVHDEIV 851

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            L+ PS+     K +V E M         L V L  D    + WY AK
Sbjct: 852  LQVPSDELAAIKELVKETMESAI----ELAVPLEADENEGKTWYEAK 894


>gi|386715049|ref|YP_006181372.1| DNA polymerase I [Halobacillus halophilus DSM 2266]
 gi|384074605|emb|CCG46098.1| DNA polymerase I [Halobacillus halophilus DSM 2266]
          Length = 881

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/343 (33%), Positives = 177/343 (51%), Gaps = 30/343 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARR 841
            ++  +  + IS++     +  L S +I  L    ++    ++H   N   T+TGRLS+  
Sbjct: 567  EQLEDQHEIISSILMYRQLGKLKSTYIEGLLKV-INEDTHKIHTRFNQALTQTGRLSSTE 625

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGD 900
            PNLQN P   ++  KIRQAFI    N +I A DY Q+ELR+LAH+A  + +++AF+ G D
Sbjct: 626  PNLQNIPIRLEEGRKIRQAFIPSKENWVIFASDYSQIELRVLAHIAQDEKLIEAFREGQD 685

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H++TA  ++   +                       +D  +  RR+AK +NF I YG +
Sbjct: 686  IHTQTASEVFGVAK-----------------------EDVTSEMRRQAKAVNFGIVYGIS 722

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GL++   +  +EA+  +D +      V T+ E   +E++   +V T + R R  P + 
Sbjct: 723  DYGLSQSLDIPRKEAQAFIDKYLESYPGVKTYMEETVQEAKQVGYVTTFMNRRRYLPELT 782

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGP 1080
            S   ++RN  ER A+NTP+QGSAADV   AM+++      + L  K+LLQVHDE+ILE P
Sbjct: 783  SRNFNRRNAAERTAMNTPIQGSAADVIKKAMIDLENRLAEENLEAKMLLQVHDELILEAP 842

Query: 1081 SESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E  E  K +V   M +       L V L VD      WY AK
Sbjct: 843  EEEVEQLKEVVASVMEQTV----KLDVPLKVDYSYGSTWYDAK 881


>gi|449095353|ref|YP_007427844.1| DNA polymerase I [Bacillus subtilis XF-1]
 gi|449029268|gb|AGE64507.1| DNA polymerase I [Bacillus subtilis XF-1]
          Length = 880

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 182/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCSLN-INTETGRL 837
            + D +  L +   I   I  +  I  LQ + + G        + +VH   N   T+TGRL
Sbjct: 561  SADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTGRL 620

Query: 838  SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFK 896
            S+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF 
Sbjct: 621  SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFT 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
               D H++TAM+++   ++ V +                         RR+AK +NF I 
Sbjct: 681  NDMDIHTKTAMDVFHVAKDEVTSAM-----------------------RRQAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+++  ++ +EA   +D +    Q V  + E   +E++   +V TL+ R R  
Sbjct: 718  YGISDYGLSQNLGITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYI 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P + S   + R+  ER A+NTP+QGSAAD+   AM++++   + K+L  +LLLQVHDE+I
Sbjct: 778  PELTSRNFNIRSFAERTAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELI 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E P E  E+ + +V E M         L V L VD     +WY AK
Sbjct: 838  FEAPKEEIEILEKLVPEVMEHAL----ALDVPLKVDFASGPSWYDAK 880


>gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
 gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
          Length = 920

 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 175/349 (50%), Gaps = 33/349 (9%)

Query: 779  FATEQEAREACD----AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTE 833
            F T +E  +  +     ++ + E   +  L+  ++  L    ++ + G +H S N   T 
Sbjct: 599  FVTSEEVLQQLENKSPIVAKILEYRGLKKLLGTYVDALP-KLINPRTGHIHTSFNQAITA 657

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P   +D  +IR+ FI  PG     ADY Q+ELR++AHL++ K+M++
Sbjct: 658  TGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEPGCLFFSADYSQIELRVMAHLSSDKNMIE 717

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF  G D H+ TA  +Y                    K P+   ++    ER KAK  NF
Sbjct: 718  AFMHGYDIHAATAAKIY--------------------KKPI---EEVTRDERNKAKRANF 754

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG T  GLA+   +   EAK+ ++ ++    +V  + E  K ++R   +  TL  R 
Sbjct: 755  GIIYGITTYGLAQRLDIDNREAKELIEGYFETFPQVYEYMERAKADARAKGYAETLFHRR 814

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHD 1073
            R  P I S   + R + ER AIN P+QGSAAD+   AM+ IS   + + +  KL+LQVHD
Sbjct: 815  RYLPDINSHNATVRGYAERNAINAPIQGSAADIIKVAMIRISDRFKRENIHSKLILQVHD 874

Query: 1074 EVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            E+      +  E  + IV+E M   +     LRV L  DA    NW  A
Sbjct: 875  ELNFSVYPDEKEKVERIVLEEMQNAY----PLRVPLVADAGWGSNWLEA 919



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 92/254 (36%), Gaps = 64/254 (25%)

Query: 421 GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEG 480
            + ++N F P +E+P I KV  N  +D  VL NYG+ + G   DTM    +     R   
Sbjct: 390 AQKIVNIFKPIYENPDILKVGQNLKYDLEVLHNYGVTLKGKMFDTMLAHYVIQPELRHNM 449

Query: 481 GYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKIST 540
            Y  E L   R +               + DE                            
Sbjct: 450 DYMAETLLNYRTI---------------HIDE---------------------------L 467

Query: 541 IAPVEELQREEREL----WISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFD 596
           I P  + Q+  REL       Y+A D+  TL+L   L+ KL EM  +            D
Sbjct: 468 IGPRGKNQKSMRELDPKEVYEYAAEDADITLQLKNVLETKLKEMECE------------D 515

Query: 597 FYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYM 656
            +     P   +L ++E  G+++D + L E   +     +   +   + A +        
Sbjct: 516 LFWNIEMPLMPVLAEIEMNGVVIDTDSLRETSAILTKRMQDYEHEIYQLAGEE------F 569

Query: 657 NVGSDTQLRQLLFG 670
           N+ S  Q+  +LFG
Sbjct: 570 NISSPKQVGDILFG 583


>gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 901

 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 161/304 (52%), Gaps = 29/304 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GR+H + N I   TGRLS+ +PNLQN P    +  +IRQ F+  PG  +L+ ADY Q+E
Sbjct: 623  DGRIHTTFNQIVAATGRLSSEKPNLQNIPIRTVEGRRIRQGFVVGPGYETLLTADYSQIE 682

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LRI+AHL+  +S++ AF++G DFH  TA  ++      +E  QV  E             
Sbjct: 683  LRIMAHLSGDESLIAAFESGHDFHKTTAARVFD-----IEPEQVTGEM------------ 725

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  R K K +N+ +AYG +  GLA    + V+EAK   + ++ E   V  +  A   
Sbjct: 726  ------RAKIKAMNYGLAYGLSDFGLAGQLNIPVQEAKALKEEYFEEFGGVRDFLNAIVA 779

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R D +  T++GR R  P + S  R +R   ER A+N P+QGSAAD+   AML +    
Sbjct: 780  QARQDGYTETIMGRRRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLNVQSAV 839

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            +   LG ++LLQVHDE++ E      E  + +V + M    N   +LRV L V     + 
Sbjct: 840  KEAALGSRMLLQVHDELVFEVAPGELETLRELVTDRM----NAAYSLRVPLEVSVGVGRT 895

Query: 1119 WYSA 1122
            W  A
Sbjct: 896  WEDA 899


>gi|430756264|ref|YP_007208586.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. BSP1]
 gi|430020784|gb|AGA21390.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. BSP1]
          Length = 880

 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 182/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCSLN-INTETGRL 837
            + D +  L +   I   I  +  I  LQ + + G        + +VH   N   T+TGRL
Sbjct: 561  SADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTGRL 620

Query: 838  SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFK 896
            S+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF 
Sbjct: 621  SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFT 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
               D H++TAM+++   ++ V +                         RR+AK +NF I 
Sbjct: 681  NDMDIHTKTAMDVFHVAKDEVTSAM-----------------------RRQAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+++  ++ +EA   +D +    Q V  + E   +E++   +V TL+ R R  
Sbjct: 718  YGISDYGLSQNLGITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYI 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P + S   + R+  ER A+NTP+QGSAAD+   AM++++   + K+L  +LLLQVHDE+I
Sbjct: 778  PELTSRNFNIRSFAERTAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELI 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E P E  E+ + +V E M         L V L VD     +WY AK
Sbjct: 838  FEAPREEIEILEKLVPEVMEHAL----ALDVPLKVDFASGPSWYDAK 880


>gi|431764107|ref|ZP_19552650.1| DNA polymerase I [Enterococcus faecium E4215]
 gi|430631292|gb|ELB67614.1| DNA polymerase I [Enterococcus faecium E4215]
          Length = 881

 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKNQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKEAGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|387773168|ref|ZP_10128763.1| DNA-directed DNA polymerase [Haemophilus parahaemolyticus HK385]
 gi|386905208|gb|EIJ69979.1| DNA-directed DNA polymerase [Haemophilus parahaemolyticus HK385]
          Length = 950

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/357 (35%), Positives = 180/357 (50%), Gaps = 36/357 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   E+ A+E       L E   +  L S +   LP     ++ K GRVH 
Sbjct: 626  KGAPSTNEEVL--EELAQEGHIVPKLLIEHRGLSKLKSTYTDKLP---QMINPKTGRVHT 680

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 681  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYKIVAADYSQIELRIMAHL 740

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            A+ + ML AF  G D H  TA  ++         G  L E   E              +R
Sbjct: 741  AHDEGMLKAFTEGKDIHRSTAAEIF---------GVSLEEVTNE--------------QR 777

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +S +EA+  +D ++N    VL +    K ++    +
Sbjct: 778  RNAKAINFGLIYGMSEFGLSNQLGISRQEARSYMDAYFNRYPNVLQFMTDIKTKAAEQGY 837

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
            V TLLGR    P IKS    +R   ER AIN P+QG+AAD+   AM+ I K A L +   
Sbjct: 838  VETLLGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDK-AILGDENI 896

Query: 1066 KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            K+++QVHDE++ E  +E  E    ++   M K       L + L  D     NW  A
Sbjct: 897  KMIMQVHDELVFEVKAEMVEHYSQLIKTEMEKAI----KLHIPLIADVGVGDNWDEA 949



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 147/385 (38%), Gaps = 100/385 (25%)

Query: 325 NENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQE 384
            E+  K+EI RSK    Y  V +   ++      W+   + + LV A DTE   +DV   
Sbjct: 319 TESFAKVEIDRSK----YETVTIETQLTK-----WIKKIQKEKLV-AVDTETNALDVMSA 368

Query: 385 TPVDHGEVICFSIYSGP----------EADFGNGKSCIWVDLLDGGGRDL---------- 424
             V     I F + SG           E     G+  ++V+     G +L          
Sbjct: 369 ELVG----ISFGLASGEACYIPLTHKEEVSEQAGQGDLFVESTATLGYELVKNQLDLTAC 424

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
           L +  P  ED  IKK+  N  +D  V  N+G++V G   DTM  +   +S+ R       
Sbjct: 425 LAQLKPILEDEQIKKIGQNIKYDLTVFANHGIEVQGVAFDTMLESYTQNSTGRHNMDDLA 484

Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
           E   G + +  E+                  GK       G+ +L  D  A  +++    
Sbjct: 485 ERYLGHKTIAFEE----------------IAGK-------GKNQLTFDKIALDVAS---- 517

Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQP 604
                        Y+A D+  T+KL+++L  +L         +  P  ++   + +   P
Sbjct: 518 ------------EYAAEDADVTMKLHQTLFPEL---------EKTP--TLLKLFNDIEMP 554

Query: 605 FGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
              +L  +E  G+L+D + L     EIE+   AE EA V         H    +  N+ S
Sbjct: 555 LVRVLSHIERNGVLIDPQKLLAQSQEIEQ-RLAEVEAEV---------HQAAGQEFNLAS 604

Query: 661 DTQLRQLLFG--GKPNSKDDSESLP 683
             QL+++LF   G P  K   +  P
Sbjct: 605 TKQLQEILFEKLGLPVKKKTPKGAP 629


>gi|340399640|ref|YP_004728665.1| DNA polymerase I [Streptococcus salivarius CCHSS3]
 gi|338743633|emb|CCB94143.1| DNA polymerase I [Streptococcus salivarius CCHSS3]
          Length = 879

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 185/337 (54%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQVHDE++LE P++    
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQVHDEIVLEVPNDELVA 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             K +V E M         L V L  D    + WY AK
Sbjct: 847  MKTLVKETMEAAV----ELAVPLIADENDGRTWYEAK 879


>gi|222529430|ref|YP_002573312.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
 gi|226693519|sp|Q59156.2|DPO1_ANATD RecName: Full=DNA polymerase I; Short=Pol I
 gi|222456277|gb|ACM60539.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
          Length = 850

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 167/313 (53%), Gaps = 30/313 (9%)

Query: 812  LQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
            LQ  N S   GRVH + +   T TGRL++  PNLQN P    +   IR+ F+   G+ LI
Sbjct: 567  LQAINPSS--GRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEGGHVLI 624

Query: 871  VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
             ADY Q+ELRILAH++  + ++ AFK   D HS+TA  ++                 G D
Sbjct: 625  DADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVF-----------------GVD 667

Query: 931  KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVL 990
                  + D     R +AK +NF I YG +  GLARD K+S +EA + ++ ++    +V 
Sbjct: 668  ------IADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVK 721

Query: 991  TWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCA 1050
             + +   K +R +  V TL  R R    IKS  R+ R + ER A+N+P+QGSAAD+   A
Sbjct: 722  EYLDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLA 781

Query: 1051 MLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLS 1110
            M+++ +  +   L  K++LQVHDE+++E P E  ++ K IV   M         L+V L 
Sbjct: 782  MIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKEIVKREMENAV----ALKVPLV 837

Query: 1111 VDAKCAQNWYSAK 1123
            V+ K   NWY  K
Sbjct: 838  VEVKEGLNWYETK 850


>gi|425057932|ref|ZP_18461329.1| DNA-directed DNA polymerase [Enterococcus faecium 504]
 gi|403039507|gb|EJY50651.1| DNA-directed DNA polymerase [Enterococcus faecium 504]
          Length = 881

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKNQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKEAGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|293556212|ref|ZP_06674802.1| DNA polymerase I [Enterococcus faecium E1039]
 gi|294615648|ref|ZP_06695503.1| DNA polymerase type I [Enterococcus faecium E1636]
 gi|430825489|ref|ZP_19443693.1| DNA polymerase I [Enterococcus faecium E0164]
 gi|430827618|ref|ZP_19445751.1| DNA polymerase I [Enterococcus faecium E0269]
 gi|430835804|ref|ZP_19453791.1| DNA polymerase I [Enterococcus faecium E0680]
 gi|430838095|ref|ZP_19456045.1| DNA polymerase I [Enterococcus faecium E0688]
 gi|430849690|ref|ZP_19467463.1| DNA polymerase I [Enterococcus faecium E1185]
 gi|430858146|ref|ZP_19475775.1| DNA polymerase I [Enterococcus faecium E1552]
 gi|431146141|ref|ZP_19499038.1| DNA polymerase I [Enterococcus faecium E1620]
 gi|431746177|ref|ZP_19535011.1| DNA polymerase I [Enterococcus faecium E2134]
 gi|291591477|gb|EFF23131.1| DNA polymerase type I [Enterococcus faecium E1636]
 gi|291601631|gb|EFF31893.1| DNA polymerase I [Enterococcus faecium E1039]
 gi|430445954|gb|ELA55653.1| DNA polymerase I [Enterococcus faecium E0164]
 gi|430484478|gb|ELA61493.1| DNA polymerase I [Enterococcus faecium E0269]
 gi|430489166|gb|ELA65799.1| DNA polymerase I [Enterococcus faecium E0680]
 gi|430492375|gb|ELA68789.1| DNA polymerase I [Enterococcus faecium E0688]
 gi|430537441|gb|ELA77784.1| DNA polymerase I [Enterococcus faecium E1185]
 gi|430546098|gb|ELA86064.1| DNA polymerase I [Enterococcus faecium E1552]
 gi|430575681|gb|ELB14378.1| DNA polymerase I [Enterococcus faecium E1620]
 gi|430608946|gb|ELB46152.1| DNA polymerase I [Enterococcus faecium E2134]
          Length = 881

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKNQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKEAGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|414153052|ref|ZP_11409379.1| DNA polymerase I [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
 gi|411455434|emb|CCO07281.1| DNA polymerase I [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
          Length = 884

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/309 (37%), Positives = 167/309 (54%), Gaps = 29/309 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA-VPGNSLIVADY 874
            V+ + G +H + +   T TGRLS+  PNLQN P       +IR+ FI    GN ++ ADY
Sbjct: 601  VNRQTGCLHSTFHQTVTATGRLSSAEPNLQNIPIRLASGRRIRKVFIPRQQGNLILTADY 660

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELRILAH++  K+ L+AF+ G D H+RTA  ++      V   QV  +         
Sbjct: 661  SQIELRILAHMSQDKNFLEAFQQGQDIHTRTAAEVF-----GVSLDQVTPDM-------- 707

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                      R +AK +NF I YG +  GLARD KVS +EAK+ ++ ++     V  + +
Sbjct: 708  ----------RSRAKAVNFGIVYGISDFGLARDLKVSRQEAKQYIESYFARCPGVRRYID 757

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               KE+R   +V TLL R R  P + S   + RN  ERAA+NTP+QGSAAD+   AM++I
Sbjct: 758  RVIKEARERGYVTTLLNRRRYLPELFSKNFNIRNFGERAAVNTPIQGSAADIIKLAMVKI 817

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
            ++  +      +++LQVHDE+I + P+   E    +V +CM         L V L VD K
Sbjct: 818  NQALKKGNFTAQMVLQVHDELIFDAPAAEIEPLIVLVRDCMENAL----PLDVPLMVDIK 873

Query: 1115 CAQNWYSAK 1123
               NWY  K
Sbjct: 874  LGTNWYDTK 882


>gi|294501500|ref|YP_003565200.1| DNA polymerase I [Bacillus megaterium QM B1551]
 gi|294351437|gb|ADE71766.1| DNA polymerase I [Bacillus megaterium QM B1551]
          Length = 875

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 176/336 (52%), Gaps = 30/336 (8%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQP 848
            D I  + +   +  L S +I  L+   +   +G+VH   N   T+TGRLS+  PNLQN P
Sbjct: 568  DIIPEILQYRQLGKLQSTYIEGLK-KVIHESDGKVHTRFNQTLTQTGRLSSVDPNLQNIP 626

Query: 849  ALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
               ++  KIR AF+ + P   +  ADY Q+ELR+LAH+A+ + ++DAFK   D H++TAM
Sbjct: 627  IRLEEGKKIRGAFVPSQPDWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHTKTAM 686

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
            +++   R  V +                         RR+AK +NF I YG +  GL++ 
Sbjct: 687  DVFHVEREEVTSNM-----------------------RRQAKAVNFGIVYGISDYGLSQS 723

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ + A   ++ +      V  + +   ++++   +V TLL R R  P I S   + R
Sbjct: 724  LGITRKAAATFIERYLKSFPGVQEYMDTIVRDAKEKGYVTTLLHRRRYLPEITSRNFNLR 783

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVA 1087
            +  ER A+NTP+QG+AAD+   AM+E+ K  + + L  KLLLQVHDE+I E P E  ++ 
Sbjct: 784  SFAERTAMNTPIQGTAADIIKKAMIEMDKRLKDENLQAKLLLQVHDELIFEAPEEEIKIL 843

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + IV E M         L V L VD    + WY AK
Sbjct: 844  EKIVPEVMENAL----ELEVPLKVDYSYGKTWYEAK 875


>gi|374298760|ref|YP_005050399.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay]
 gi|332551696|gb|EGJ48740.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay]
          Length = 882

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/354 (33%), Positives = 188/354 (53%), Gaps = 33/354 (9%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN 829
            GA ++ N +    ++ R     ++ + E   ++ L S ++ PL    ++ + GR+H + N
Sbjct: 560  GAQSTANPVL---EKLRNEHPVVADILEFRMLEKLRSTYLEPL--PKLADEQGRIHTTFN 614

Query: 830  -INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
             + T TGRLS+  PNLQN P       ++R  F A PG  L  ADY Q+ELR+LAH++  
Sbjct: 615  QLATATGRLSSSAPNLQNIPIRGPQGTRMRACFTAGPGCLLAAADYSQIELRVLAHMSQD 674

Query: 889  KSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKA 948
             ++L+AF+ G D H+RTA  ++       + GQV                     ERR A
Sbjct: 675  PTLLEAFRHGQDIHARTAGLIFDK-----DAGQVA------------------PDERRSA 711

Query: 949  KMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHT 1008
            K +NF + YG  P  LA +  +++ +AK+ ++ ++    ++  + ++  KE+  +  V T
Sbjct: 712  KTINFGLLYGMGPQKLAAELGIALAQAKEFIERYFVGLSKLKEFYDSIVKEAEQNGSVVT 771

Query: 1009 LLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLL 1068
            +LGR R  P I S   + +    R AINT +QGSAAD+   AM+    + +++ LG +L+
Sbjct: 772  MLGRRRLLPDIHSRNDNLKAQAVRQAINTRIQGSAADIIKLAMIRAHADEKIRALGGRLI 831

Query: 1069 LQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            LQVHDE++LE P  +A+ A A + E M+    G   L V L VD    +NW  A
Sbjct: 832  LQVHDELLLETPEATAQEAGARMKEIMA----GIVELSVPLVVDMGVGRNWAEA 881


>gi|431497705|ref|ZP_19514859.1| DNA polymerase I [Enterococcus faecium E1634]
 gi|430588640|gb|ELB26832.1| DNA polymerase I [Enterococcus faecium E1634]
          Length = 881

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDITP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKNQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKEAGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|449871039|ref|ZP_21780970.1| DNA polymerase I [Streptococcus mutans 8ID3]
 gi|449155673|gb|EMB59173.1| DNA polymerase I [Streptococcus mutans 8ID3]
          Length = 878

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  IF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|90961464|ref|YP_535380.1| DNA polymerase I [Lactobacillus salivarius UCC118]
 gi|90820658|gb|ABD99297.1| DNA polymerase I [Lactobacillus salivarius UCC118]
          Length = 892

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 170/309 (55%), Gaps = 28/309 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            VS K+G+ H       T TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  +DY
Sbjct: 610  VSKKDGKAHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDY 669

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++  K+M +AFK G D H+ TAM ++                   D P  
Sbjct: 670  SQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIF-----------------NVDSPD- 711

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                +   + RR+AK +NF I YG +  GL+++  +S ++AK+ +D + +    V  + E
Sbjct: 712  ----EVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYME 767

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               + ++ + +V T+  R R  P IKS   + R+  ER A+N+P+QGSAAD+   AM+ +
Sbjct: 768  KIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSAADIIKVAMINM 827

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
             +  + K L  K+LLQVHDE+I E P+E   + + +V + M         L V L V++K
Sbjct: 828  QEMLKEKNLQAKMLLQVHDELIFEAPTEEIPLLEDMVPKVMDSAV----KLDVPLKVESK 883

Query: 1115 CAQNWYSAK 1123
              Q W+  K
Sbjct: 884  HGQTWFDTK 892


>gi|365132882|ref|ZP_09342443.1| DNA polymerase I [Subdoligranulum sp. 4_3_54A2FAA]
 gi|363616202|gb|EHL67651.1| DNA polymerase I [Subdoligranulum sp. 4_3_54A2FAA]
          Length = 844

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 165/308 (53%), Gaps = 28/308 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V G +GR+H + N   T TGR+S+  PNLQN P   +   + R+ FIA  G +L+ ADY 
Sbjct: 563  VVGADGRIHSTFNQTETRTGRISSGEPNLQNIPVRTELGSRFRKYFIAPQGETLLDADYS 622

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH++  ++M +AF++G D H  TA  +Y                     PP  
Sbjct: 623  QIELRLLAHISGDEAMCEAFRSGADIHRSTAARIY-------------------GLPP-- 661

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
              +    + R  AK +NF I YG     L++D  VSV+EA   +  ++     V  + + 
Sbjct: 662  --EQVTPALRSSAKAVNFGIVYGIGAFSLSKDIGVSVKEADAFIKNYFANFPGVKKYLDE 719

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              ++ R + +V TL GR R  P + S   + R+  ER A+NTP+QG+AAD+   AM+ + 
Sbjct: 720  TVEQGRENGYVTTLYGRRRTLPELASSNFNVRSLGERMAMNTPIQGTAADIIKLAMVRVY 779

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
            +  + + L  +L+LQVHDE+I+E P+E  E A  ++ E M     G   LRV LS D   
Sbjct: 780  RRLKAEGLRARLILQVHDELIVECPAEEKERAAKVLGEEM----RGAAELRVPLSADVNS 835

Query: 1116 AQNWYSAK 1123
               WY+AK
Sbjct: 836  GTTWYAAK 843


>gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
 gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
          Length = 903

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 108/298 (36%), Positives = 160/298 (53%), Gaps = 28/298 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            R+H S N   T TGRLS+  PNLQN P   +   +IR+AFIA PG  L+  DY Q++LR+
Sbjct: 629  RLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPPGTVLLAGDYSQIDLRV 688

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAHL+   ++++AF++  D H+ TA  +                    + PP  + K+  
Sbjct: 689  LAHLSQDPALIEAFQSDQDIHTATAARLL-------------------NIPPSKVTKE-- 727

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
              +RR AK +NF + YG +  GL +  ++S+EEA K +  ++ +   V  +    K++ R
Sbjct: 728  --QRRLAKTVNFGVIYGMSSYGLEQATELSLEEADKFIKAYFEKYPRVAVYFSEIKQQVR 785

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V TLLGR R  P I S  R  R   ER AIN PVQG++AD+   AM+ + +  + +
Sbjct: 786  TQGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKLAMVRLDEKLKEE 845

Query: 1062 ELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            +L  +LLLQVHDE+I E P         ++VE MS    G     + L V+ K   NW
Sbjct: 846  KLKSRLLLQVHDELIFEVPKTELGRMSDLLVETMS----GAVAFEIPLKVELKSGANW 899


>gi|294617839|ref|ZP_06697450.1| DNA polymerase type I [Enterococcus faecium E1679]
 gi|431661111|ref|ZP_19523923.1| DNA polymerase I [Enterococcus faecium E1904]
 gi|291595912|gb|EFF27194.1| DNA polymerase type I [Enterococcus faecium E1679]
 gi|430600231|gb|ELB37885.1| DNA polymerase I [Enterococcus faecium E1904]
          Length = 881

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQALTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|423683390|ref|ZP_17658229.1| DNA polymerase I [Bacillus licheniformis WX-02]
 gi|383440164|gb|EID47939.1| DNA polymerase I [Bacillus licheniformis WX-02]
          Length = 879

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 168/303 (55%), Gaps = 29/303 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+      LI  ADY Q+ELR
Sbjct: 604  KVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSQKGWLIFAADYSQIELR 663

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH++  K++++AF    D H++TAM+++                H  ++   P +   
Sbjct: 664  VLAHISKDKNLIEAFTNDMDVHTKTAMDVF----------------HVSEEEVTPAM--- 704

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
                RR+AK +NF I YG +  GL+++  ++ +EA   ++ +++  Q V  + E   +E+
Sbjct: 705  ----RRQAKAVNFGIVYGISDYGLSQNLGITRKEAAAFIERYFHSFQGVKEYMEETVQEA 760

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P + S   + R+  ER A+NTP+QGSAAD+   AM++++   + 
Sbjct: 761  KQRGYVTTLLSRRRYIPELTSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMADKLKE 820

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
            K L  KLLLQVHDE+I E P +  +V + +V E M         L V L VD     +WY
Sbjct: 821  KNLQAKLLLQVHDELIFEAPEDEIKVLEKLVPEVMEHAL----ELDVPLKVDCASGPSWY 876

Query: 1121 SAK 1123
             AK
Sbjct: 877  DAK 879


>gi|306832348|ref|ZP_07465502.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp.
            gallolyticus TX20005]
 gi|304425787|gb|EFM28905.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp.
            gallolyticus TX20005]
          Length = 878

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 176/335 (52%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ  +   ++G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VSKILEYRQIAKLQSTYIVGLQ--DFILQDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIA-VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+       L+ +DY Q+ELR+LAH++N + ++ AF+ G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF I YG +  GLA + 
Sbjct: 690  VF-----GIE--------KTEDVTP---------NDRRNAKAVNFGIVYGISDYGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +  + AK+ ++ ++     +  + E   ++++   +V TL  R R  P I S   + R 
Sbjct: 728  GIPRKVAKQYIETYFERYPGIKNYMERVVRDAKDKGYVETLFHRRRELPDINSRNFNIRQ 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + K     +   K+LLQVHDE+IL+ P    E  K
Sbjct: 788  FAERTAINSPIQGSAADILKIAMINLDKALVDGQFKTKMLLQVHDEIILQVPKNELEAVK 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M        +L V L  D    Q WY AK
Sbjct: 848  TLVKETMESAI----DLSVPLIADENAGQTWYEAK 878


>gi|227890554|ref|ZP_04008359.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741]
 gi|227867492|gb|EEJ74913.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741]
          Length = 892

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 170/309 (55%), Gaps = 28/309 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            VS K+G+ H       T TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  +DY
Sbjct: 610  VSKKDGKAHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDY 669

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++  K+M +AFK G D H+ TAM ++                   D P  
Sbjct: 670  SQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIF-----------------NVDSPD- 711

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                +   + RR+AK +NF I YG +  GL+++  +S ++AK+ +D + +    V  + E
Sbjct: 712  ----EVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYME 767

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               + ++ + +V T+  R R  P IKS   + R+  ER A+N+P+QGSAAD+   AM+ +
Sbjct: 768  KIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSAADIIKVAMINM 827

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
             +  + K L  K+LLQVHDE+I E P+E   + + +V + M         L V L V++K
Sbjct: 828  QEMLKEKNLQAKMLLQVHDELIFEAPTEEIPLLEDMVPKVMDSAV----KLDVPLKVESK 883

Query: 1115 CAQNWYSAK 1123
              Q W+  K
Sbjct: 884  HGQTWFDTK 892


>gi|430833099|ref|ZP_19451112.1| DNA polymerase I [Enterococcus faecium E0679]
 gi|430486554|gb|ELA63390.1| DNA polymerase I [Enterococcus faecium E0679]
          Length = 881

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKEAGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEIMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|442804423|ref|YP_007372572.1| DNA polymerase I [Clostridium stercorarium subsp. stercorarium DSM
            8532]
 gi|38146981|gb|AAR11875.1| DNA polymerase I [Clostridium stercorarium]
 gi|442740273|gb|AGC67962.1| DNA polymerase I [Clostridium stercorarium subsp. stercorarium DSM
            8532]
          Length = 898

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 186/358 (51%), Gaps = 34/358 (9%)

Query: 771  AVASNNKIFATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHC 826
             V S    ++T+ E  E      D I  + E   +  L + +   L+   ++   G++H 
Sbjct: 568  VVKSTKTGYSTDVEVLEELYYKHDIIPCIIEYRQLTKLYTTYAEGLEKV-INPVTGKIHS 626

Query: 827  SLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAH 884
            S N   T TGR+S+  PNLQN P   +   +IR+AFI    N++ V ADY Q+ELR+LAH
Sbjct: 627  SFNQTVTATGRISSTEPNLQNIPVRHEMGREIRKAFIPSSENAVFVDADYSQIELRVLAH 686

Query: 885  LANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASE 944
            +   +++++AF  G D H+ TA  ++                   D  P    +D     
Sbjct: 687  ITGDEALINAFVKGEDIHTATASLVF-------------------DVAP----EDVTPEL 723

Query: 945  RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDN 1004
            RRKAK +NF I YG +  GLARD  ++ +EAK+ +D ++ +  +V T+ +   +  +   
Sbjct: 724  RRKAKAVNFGIVYGISDYGLARDLGITRKEAKRYIDDYFAKYPKVKTYVDEIVRVGQEQG 783

Query: 1005 HVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELG 1064
            +V TL  R R  P + S    QR+  +R A+NTP+QG+AAD+   AM+++ K  +   L 
Sbjct: 784  YVETLFHRRRYLPELASKNFHQRSFGKRVAMNTPIQGTAADIIKIAMVKVYKALKESGLK 843

Query: 1065 WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
             +L+LQVHDE+++E   +  E  K +V +CM +       L V L VD    +NWY A
Sbjct: 844  SRLILQVHDELVIETFEDELETVKELVKKCMEEAV----ELSVPLVVDVSIGKNWYEA 897


>gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
 gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
          Length = 921

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 170/341 (49%), Gaps = 29/341 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
            Q+ R   + ++ + E   +  LI  +I  L    ++ K G +H S N   T TGRLS+  
Sbjct: 608  QQLRNKHEIVADILEHRGLKKLIGTYIDALPKL-INPKTGHIHTSFNQTITATGRLSSSD 666

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQN P   +D  +IR+AFI  PG     ADY Q+ELR++AHL+    M+  F  G D 
Sbjct: 667  PNLQNIPIRGEDGKEIRKAFIPEPGCLFFSADYSQIELRVMAHLSQDAEMIKVFSEGKDL 726

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TA N+Y                    K P+   ++    ER K+K  NF I YG T 
Sbjct: 727  HAATAANIY--------------------KKPI---EEVTRDERTKSKRANFGIIYGITV 763

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA    +  +EAK  +D +++   +V  + E  K+ +R   +V TL GR R  P I S
Sbjct: 764  FGLAERLDIPRDEAKMLIDGYFDTFPQVHDYMEKSKEVAREKGYVTTLFGRRRYLPDINS 823

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPS 1081
               + R   ER AIN P+QG+AAD+   AM+ I    + + +  K++LQVHDE+      
Sbjct: 824  HNATVRGFAERNAINAPIQGTAADIIKVAMIRIYNRFKAEGIRSKMILQVHDELNFSVYP 883

Query: 1082 ESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            +  E  + IV++ M        NL V L  D+   +NW  A
Sbjct: 884  DEKEKVEGIVLQEMQNAL----NLSVPLVADSGFGKNWLEA 920



 Score = 42.7 bits (99), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           ++N F P +E+P I KV  N  +D  VL NYG+++ G   DTM
Sbjct: 394 IVNIFKPAYENPEILKVGQNLKYDLEVLRNYGIELKGKMWDTM 436


>gi|418961104|ref|ZP_13512991.1| DNA polymerase I [Lactobacillus salivarius SMXD51]
 gi|380344771|gb|EIA33117.1| DNA polymerase I [Lactobacillus salivarius SMXD51]
          Length = 892

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 170/309 (55%), Gaps = 28/309 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            VS K+G+ H       T TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  +DY
Sbjct: 610  VSKKDGKAHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDY 669

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++  K+M +AFK G D H+ TAM ++                   D P  
Sbjct: 670  SQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIF-----------------NVDSPD- 711

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                +   + RR+AK +NF I YG +  GL+++  +S ++AK+ +D + +    V  + E
Sbjct: 712  ----EVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYME 767

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               + ++ + +V T+  R R  P IKS   + R+  ER A+N+P+QGSAAD+   AM+ +
Sbjct: 768  KIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSAADIIKVAMINM 827

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
             +  + K L  K+LLQVHDE+I E P+E   + + +V + M         L V L V++K
Sbjct: 828  QEMLKEKNLQAKMLLQVHDELIFEAPTEEIPLLEDMVPKVMDSAV----KLDVPLKVESK 883

Query: 1115 CAQNWYSAK 1123
              Q W+  K
Sbjct: 884  HGQTWFDTK 892


>gi|312127509|ref|YP_003992383.1| DNA polymerase i [Caldicellulosiruptor hydrothermalis 108]
 gi|311777528|gb|ADQ07014.1| DNA polymerase I [Caldicellulosiruptor hydrothermalis 108]
          Length = 850

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/313 (36%), Positives = 170/313 (54%), Gaps = 30/313 (9%)

Query: 812  LQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
            LQ  N S   GRVH + +   T TGRL++  PNLQN P    +   IR+ F+   G+ LI
Sbjct: 567  LQAINPSS--GRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEEGHVLI 624

Query: 871  VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
             ADY Q+ELRILAH++  + +++AFK   D HS+TA  ++                 G D
Sbjct: 625  DADYSQIELRILAHISEDERLINAFKNNIDIHSQTAAEVF-----------------GVD 667

Query: 931  KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVL 990
                  + D     R +AK +NF I YG +  GLARD K+S +EA + ++ ++    +V 
Sbjct: 668  ------IADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVK 721

Query: 991  TWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCA 1050
             + +   + +R + +V TL  R R    IKS  R+ R++ ER A+N+P+QGSAAD+   A
Sbjct: 722  EYLDNIVRFARENGYVLTLFNRKRYVKDIKSANRNARSYAERIAMNSPIQGSAADIMKLA 781

Query: 1051 MLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLS 1110
            M+++ +  +   L  K++LQVHDE+++E P E  ++ K IV   M         L+V L 
Sbjct: 782  MIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKRIVKREMENAV----ALKVPLV 837

Query: 1111 VDAKCAQNWYSAK 1123
            V+ K   NWY  K
Sbjct: 838  VEVKEGLNWYETK 850


>gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015]
 gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015]
          Length = 900

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/308 (36%), Positives = 171/308 (55%), Gaps = 30/308 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            +  K GRVH S +     TGRLS+  PNLQN P   ++  +IR+AF+A PG+ ++ ADY 
Sbjct: 620  IDSKTGRVHTSYHQAVAATGRLSSSDPNLQNIPIRSEEGRRIREAFVAEPGHKILAADYS 679

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  ++++ AFK G D H  TA  ++    + VE+ Q              
Sbjct: 680  QIELRIMAHLSGDETLIRAFKEGRDIHQATASEVFGVPLDEVESEQ-------------- 725

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR+AK +NF + YG +  GLA+   +S  EA+  VD ++     V  + E 
Sbjct: 726  ---------RRRAKAVNFGLIYGMSAFGLAKQLGISRGEAQGYVDTYFERYPGVRDYMER 776

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             ++++R   +V T  GR    P I+S    +R H ER AIN P+QG+AAD+   AM+ I 
Sbjct: 777  TREQAREQGYVETEFGRRLYLPEIQSRNVPRRQHAERTAINAPMQGTAADIIKRAMIAI- 835

Query: 1056 KNARLKEL-GWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
             +A  KEL   ++++QVHDE++ E P + A+  +A+V   M +      +LRV L V++ 
Sbjct: 836  HDALEKELPDVRMVMQVHDELVFEVPEDQAKQTQALVETKMVE----AADLRVALDVESD 891

Query: 1115 CAQNWYSA 1122
             A +W +A
Sbjct: 892  IADSWGAA 899


>gi|300856524|ref|YP_003781508.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
 gi|300436639|gb|ADK16406.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
          Length = 876

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/324 (35%), Positives = 177/324 (54%), Gaps = 35/324 (10%)

Query: 804  LISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFI 862
            L S +I  L+   V  ++ ++H S N   T TGRLS+  PNLQN P   +   +IR+ F 
Sbjct: 584  LYSTYIEGLKA--VIQEDDKIHSSFNQTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKIF- 640

Query: 863  AVPGNS---LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
             VP N    ++ ADY Q+ELR+LAH+A+ ++++ AF    D H++TA  ++         
Sbjct: 641  -VPENEDCVILSADYSQIELRVLAHIADDENLISAFINHSDIHTKTASEVF--------- 690

Query: 920  GQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTV 979
                       K P+    +  +++R  AK +NF I YG     LA++ K+S +EAK  +
Sbjct: 691  -----------KVPID---EVTSAQRSNAKAVNFGIVYGIGDFSLAKNLKISRKEAKLYI 736

Query: 980  DLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPV 1039
            D ++    +V  + +   KE++++++V TL+ R R  P IKS  +  R+  ER A+NTP+
Sbjct: 737  DTYFERYPKVKLYMDDIVKEAKVNSYVTTLMNRRRFIPEIKSSNKIVRSFGERLAMNTPI 796

Query: 1040 QGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPF 1099
            QGSAAD+   AM+ + +     +L  KL+LQVHDE+IL    E  +  K++V E M K  
Sbjct: 797  QGSAADIIKIAMVNVYRRLEENKLKSKLILQVHDELILNVYKEEIDNVKSVVKEEMEKVL 856

Query: 1100 NGKNNLRVDLSVDAKCAQNWYSAK 1123
                 L+V L VD     NWY AK
Sbjct: 857  ----QLKVPLEVDISVGSNWYEAK 876


>gi|397649035|ref|YP_006489562.1| DNA polymerase I [Streptococcus mutans GS-5]
 gi|392602604|gb|AFM80768.1| DNA polymerase I [Streptococcus mutans GS-5]
          Length = 878

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|450007895|ref|ZP_21827949.1| DNA polymerase I [Streptococcus mutans NMT4863]
 gi|449185919|gb|EMB87782.1| DNA polymerase I [Streptococcus mutans NMT4863]
          Length = 878

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|450115127|ref|ZP_21863760.1| DNA polymerase I [Streptococcus mutans ST1]
 gi|449228389|gb|EMC27760.1| DNA polymerase I [Streptococcus mutans ST1]
          Length = 878

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|449959083|ref|ZP_21810050.1| DNA polymerase I [Streptococcus mutans 4VF1]
 gi|450160310|ref|ZP_21879928.1| DNA polymerase I [Streptococcus mutans 66-2A]
 gi|449169490|gb|EMB72260.1| DNA polymerase I [Streptococcus mutans 4VF1]
 gi|449240281|gb|EMC38966.1| DNA polymerase I [Streptococcus mutans 66-2A]
          Length = 878

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4]
 gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
            [Thermoanaerobacter tengcongensis MB4]
          Length = 871

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 188/354 (53%), Gaps = 41/354 (11%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI---LPLQGSNVSGKNGRVHCSL-NI 830
            ++T+ E  E      D +S + E   +  L S +I   LPL       +N RVH +   +
Sbjct: 550  YSTDSEVLEQLTAYNDIVSEIIEYRQLTKLKSTYIEGFLPLMD-----ENDRVHSNFKQM 604

Query: 831  NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCK 889
               TGR+S+  PNLQN P  E+   +IR+AFI    +  IV ADY Q+ELR+LAHL+  +
Sbjct: 605  VAATGRISSTEPNLQNIPVREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHLSEDE 664

Query: 890  SMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAK 949
             +++AF    D H RTA  ++                     PP    ++     RR AK
Sbjct: 665  KLIEAFMNNEDIHLRTASEVFKV-------------------PP----QNVTPEMRRAAK 701

Query: 950  MLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTL 1009
            ++NF I YG +  GLA+D K+S +EAK+ +D ++ + + V  + E   + ++ + +V T+
Sbjct: 702  VVNFGIIYGISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTI 761

Query: 1010 LGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLL 1069
            + R R  P I S   +QR+  ER A+NTP+QGSAAD+   AM+++ +  +   L  +L+L
Sbjct: 762  MNRRRYIPEINSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNLKSRLIL 821

Query: 1070 QVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            QVHDE++++   +  E+ K I+ E M         L+V L V+     NW+ AK
Sbjct: 822  QVHDELVVDTYKDELELVKEILKENMENVI----KLKVPLVVEIGVGPNWFLAK 871


>gi|24378800|ref|NP_720755.1| DNA polymerase I [Streptococcus mutans UA159]
 gi|449866923|ref|ZP_21779677.1| DNA polymerase I [Streptococcus mutans U2B]
 gi|449985073|ref|ZP_21819468.1| DNA polymerase I [Streptococcus mutans NFSM2]
 gi|24376673|gb|AAN58061.1|AE014878_7 DNA polymerase I (POL I) [Streptococcus mutans UA159]
 gi|449179569|gb|EMB81772.1| DNA polymerase I [Streptococcus mutans NFSM2]
 gi|449263570|gb|EMC60941.1| DNA polymerase I [Streptococcus mutans U2B]
          Length = 878

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498]
          Length = 968

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/320 (38%), Positives = 169/320 (52%), Gaps = 40/320 (12%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP          GRVH + ++  T TGRLS+  PNLQN P    +  KIR+AF+A
Sbjct: 680  LPSYILP--------TTGRVHTNYSLATTLTGRLSSSEPNLQNIPVRTAEGRKIRKAFVA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G  L+ ADY Q+ELRILAH+A+  ++ +AF  G D H+ TA  M+     AVE     
Sbjct: 732  SKGYLLLSADYSQIELRILAHVADITALKEAFTKGQDIHTMTASQMFG---VAVE----- 783

Query: 924  LEWHGEDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLW 982
                               SE RR+AK +NF I YG +P GLA    +S +EA   + L+
Sbjct: 784  ----------------GMTSEIRRRAKAINFGIIYGISPFGLASQLGISRKEASDYIQLY 827

Query: 983  YNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGS 1042
            +     +  + E  K  +R   +V T+ GR   +P IK+     R   ERAAIN P+QGS
Sbjct: 828  FERFPGIEDYMERTKIFARHHGYVETIFGRRIHYPEIKTAKSQIRAFNERAAINAPIQGS 887

Query: 1043 AADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGP-SESAEVAKAI--VVECMSKPF 1099
            AAD+   AM+++      + L  K+LLQVHDE+I E P SES + A  I  V+E  + P 
Sbjct: 888  AADIIRRAMIQMENALEKERLSAKMLLQVHDELIFEVPKSESTKTAILIKKVMENATMP- 946

Query: 1100 NGKNNLRVDLSVDAKCAQNW 1119
                +L V L V    AQNW
Sbjct: 947  --ALSLSVPLEVKVIAAQNW 964



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 134/331 (40%), Gaps = 83/331 (25%)

Query: 417 LDGGGRDL--------LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHM 468
           L GGGR +        L    P  E+ ++ K+  N  +D  V++ Y + +  F  DTM +
Sbjct: 423 LLGGGRIVPQIETQKALALLKPILENQAVLKIGQNIKYDWLVMKQYNIVMCSFD-DTMLL 481

Query: 469 ARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRK 528
           +   ++   T G            V+S+    ++               IS KD+     
Sbjct: 482 SYALEAGISTHG----------MDVLSKRWLGHKP--------------ISYKDL----- 512

Query: 529 LKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKP 588
                S  KI + A V+  Q         Y+A D+  TL+L++ LK +L+          
Sbjct: 513 ---THSGRKIVSFAQVDLKQAT------LYAAEDADITLRLWQVLKPQLV---------- 553

Query: 589 VPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIE-KVARAEQEAAVNRFRKWAS 647
              + M   Y+   +P  EIL +ME  G+LVDR+ LS +  ++A+A        ++    
Sbjct: 554 --AQKMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGELAQAALNLEEEIYQLVGE 611

Query: 648 KHCPDAKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKK 702
           K        N+ S  QL  +LFG     G   +K    S   + +      E + AEG  
Sbjct: 612 K-------FNIASPKQLGDILFGKMGLLGGAKTKSGQWSTSAQTL------EELAAEGHI 658

Query: 703 TPSK---FRNIT-LRSIGVD-LPTEMYTATG 728
            P K   +R +T L+S   D LP+ +   TG
Sbjct: 659 LPRKIIDWRQLTKLKSTYTDALPSYILPTTG 689


>gi|254478282|ref|ZP_05091662.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
            12653]
 gi|214035747|gb|EEB76441.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
            12653]
          Length = 635

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 188/354 (53%), Gaps = 41/354 (11%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI---LPLQGSNVSGKNGRVHCSL-NI 830
            ++T+ E  E      D +S + E   +  L S +I   LPL       +N RVH +   +
Sbjct: 314  YSTDSEVLEQLTAYNDIVSEIIEYRQLTKLKSTYIEGFLPLMD-----ENDRVHSNFKQM 368

Query: 831  NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCK 889
               TGR+S+  PNLQN P  E+   +IR+AFI    +  IV ADY Q+ELR+LAHL+  +
Sbjct: 369  VAATGRISSTEPNLQNIPVREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHLSEDE 428

Query: 890  SMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAK 949
             +++AF    D H RTA  ++                     PP    ++     RR AK
Sbjct: 429  KLIEAFMNNEDIHLRTASEVFKV-------------------PP----QNVTPEMRRAAK 465

Query: 950  MLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTL 1009
            ++NF I YG +  GLA+D K+S +EAK+ +D ++ + + V  + E   + ++ + +V T+
Sbjct: 466  VVNFGIIYGISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTI 525

Query: 1010 LGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLL 1069
            + R R  P I S   +QR+  ER A+NTP+QGSAAD+   AM+++ +  +   L  +L+L
Sbjct: 526  MNRRRYIPEINSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNLKSRLIL 585

Query: 1070 QVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            QVHDE++++   +  E+ K I+ E M         L+V L V+     NW+ AK
Sbjct: 586  QVHDELVVDTYKDELELVKEILKESMENVI----KLKVPLVVEIGVGPNWFLAK 635


>gi|438002755|ref|YP_007272498.1| DNA polymerase I [Tepidanaerobacter acetatoxydans Re1]
 gi|432179549|emb|CCP26522.1| DNA polymerase I [Tepidanaerobacter acetatoxydans Re1]
          Length = 462

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/308 (37%), Positives = 161/308 (52%), Gaps = 35/308 (11%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA-VPGNSLIVADY 874
            V  K GR++ S N   T TGR+S+  PNLQN P   ++   IR  F +  PG+ L+  DY
Sbjct: 182  VDKKTGRIYTSFNQTVTSTGRISSTEPNLQNIPVKTEEGKHIRGVFTSDGPGHVLLSGDY 241

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP- 933
             Q+ELR+LAH++    +++AF +G D H RTA  ++                     PP 
Sbjct: 242  SQIELRVLAHMSQDPGLIEAFVSGEDIHRRTASEVF-------------------GVPPE 282

Query: 934  --VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLT 991
               PLL+D       KAK +NF I YG +  GLA++  +S +EAK+ +D ++     V  
Sbjct: 283  EVTPLLRD-------KAKAVNFGIIYGISDYGLAQNLGISNQEAKEYIDAYFARYPGVRD 335

Query: 992  WQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAM 1051
            +     + ++   +V TLL R R  P I S     R+  ER A+NTP+QGSAAD+   AM
Sbjct: 336  YIRETIRSAKALGYVTTLLNRRRYIPDINSRNYHLRSFAERTAVNTPIQGSAADIIKIAM 395

Query: 1052 LEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSV 1111
            +++  N R   L  K+LLQVHDE+IL+ P E     K I+ + M         LRV L V
Sbjct: 396  VKVHDNLRQNNLKAKILLQVHDELILDVPEEELTAVKEILKQHMENAI----PLRVPLVV 451

Query: 1112 DAKCAQNW 1119
            D K   NW
Sbjct: 452  DFKQGYNW 459


>gi|449975012|ref|ZP_21815594.1| DNA polymerase I [Streptococcus mutans 11VS1]
 gi|449177527|gb|EMB79823.1| DNA polymerase I [Streptococcus mutans 11VS1]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKKSVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|319647318|ref|ZP_08001540.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
 gi|317390665|gb|EFV71470.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
          Length = 879

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 168/303 (55%), Gaps = 29/303 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+      LI  ADY Q+ELR
Sbjct: 604  KVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSQKGWLIFAADYSQIELR 663

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH++  K++++AF    D H++TAM+++                H  ++   P +   
Sbjct: 664  VLAHISKDKNLIEAFTNDMDVHTKTAMDVF----------------HVSEEEVTPAM--- 704

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
                RR+AK +NF I YG +  GL+++  ++ +EA   ++ +++  Q V  + E   +E+
Sbjct: 705  ----RRQAKAVNFGIVYGISDYGLSQNLGITRKEAAAFIERYFHSFQGVKEYMEETVQEA 760

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P + S   + R+  ER A+NTP+QGSAAD+   AM++++   + 
Sbjct: 761  KQRGYVTTLLSRRRYIPELTSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMADKLKE 820

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
            K L  KLLLQVHDE+I E P +  +V + +V E M         L V L VD     +WY
Sbjct: 821  KNLQAKLLLQVHDELIFEAPEDEIKVLEKLVPEVMEHAL----ELDVPLKVDCASGPSWY 876

Query: 1121 SAK 1123
             AK
Sbjct: 877  DAK 879


>gi|254417961|ref|ZP_05031685.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
 gi|196184138|gb|EDX79114.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
          Length = 971

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 158/302 (52%), Gaps = 26/302 (8%)

Query: 823  RVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  +   T GRL++  PNLQN P   +   +IRQAFIA PG+ LI ADY Q+ELR+
Sbjct: 693  RVHTSYQLAAATTGRLASSDPNLQNIPIRTETGREIRQAFIAAPGHLLISADYSQIELRL 752

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+ +   +  AFKAG D H+ TA  M+                       VP+  +  
Sbjct: 753  LAHIGDIPELKRAFKAGLDIHAATASEMFG----------------------VPV--EGM 788

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  +++    + T+ +  + E 
Sbjct: 789  PSETRRRAKAINFGIVYGISAFGLAAQLGIDQGEAGAYIKTYFDRFPGIRTYMDKTRAEV 848

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R    V T+ GR    PAI S + ++R   ERAAIN P+QG+AAD+   AM+ +      
Sbjct: 849  RQAGFVSTVFGRRIHIPAIHSKSGAERQFGERAAINAPIQGAAADIIRRAMIRMPTALAE 908

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
              L  ++LLQVHDE++ E P   A+ A  ++   M    +    L V L VDA+ A NW 
Sbjct: 909  AGLTTRMLLQVHDELVFETPEAEADRAITVIKRVMETASDPAVALTVPLVVDARAAPNWD 968

Query: 1121 SA 1122
            +A
Sbjct: 969  AA 970


>gi|449885885|ref|ZP_21785854.1| DNA polymerase I [Streptococcus mutans SA41]
 gi|449916035|ref|ZP_21796639.1| DNA polymerase I [Streptococcus mutans 15JP3]
 gi|449938611|ref|ZP_21804998.1| DNA polymerase I [Streptococcus mutans 2ST1]
 gi|450156567|ref|ZP_21878748.1| DNA polymerase I [Streptococcus mutans 21]
 gi|449155677|gb|EMB59176.1| DNA polymerase I [Streptococcus mutans 15JP3]
 gi|449162640|gb|EMB65768.1| DNA polymerase I [Streptococcus mutans 2ST1]
 gi|449235703|gb|EMC34651.1| DNA polymerase I [Streptococcus mutans 21]
 gi|449254902|gb|EMC52792.1| DNA polymerase I [Streptococcus mutans SA41]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|421849808|ref|ZP_16282782.1| DNA polymerase I [Acetobacter pasteurianus NBRC 101655]
 gi|371459425|dbj|GAB27985.1| DNA polymerase I [Acetobacter pasteurianus NBRC 101655]
          Length = 933

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 29/307 (9%)

Query: 818  SGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQ 876
            +G+N RVH S  +  T TGRLS+  PNLQN P   ++  +IRQAFIA PG  LI ADY Q
Sbjct: 653  AGRNDRVHTSFQMAITSTGRLSSTDPNLQNIPVRTEEGTRIRQAFIAPPGKKLISADYSQ 712

Query: 877  LELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPL 936
            +ELR+LA +AN  ++ +AF+ G D H+RTA  ++           + LE  G D      
Sbjct: 713  IELRLLADVANIPALREAFQLGQDIHARTASEVF----------NIPLE--GMD------ 754

Query: 937  LKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEAR 996
                 A  RR+AK +NF I YG +  GL++   +   EA+  +D ++     +  + E  
Sbjct: 755  -----ALTRRRAKAINFGIIYGISAFGLSKQLGIPAGEARTYIDAYFARYPGIRDYMERM 809

Query: 997  KKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISK 1056
            ++E+R   +V T  GR    P I   + ++R + ER AIN P+QG AAD+   AM+ +  
Sbjct: 810  REEARTHGYVLTPFGRRCYVPGIHEKSAARRQYAERQAINAPLQGGAADIIKRAMVHLPL 869

Query: 1057 NARLKELG-WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
              +    G  ++LLQVHDE++ E     AE   AI+   M        +L V L V+   
Sbjct: 870  ALQKAGFGETRMLLQVHDELLFETDESEAEAVAAIIKNVM----EAAADLAVPLVVETGI 925

Query: 1116 AQNWYSA 1122
             QNW  A
Sbjct: 926  GQNWAEA 932


>gi|333997453|ref|YP_004530065.1| DNA-directed DNA polymerase [Treponema primitia ZAS-2]
 gi|333740823|gb|AEF86313.1| DNA-directed DNA polymerase [Treponema primitia ZAS-2]
          Length = 1003

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/305 (35%), Positives = 164/305 (53%), Gaps = 28/305 (9%)

Query: 816  NVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
            +++ + GR+H + +   T TGRLS+R PNLQN P  +++  +IR+AFIA PGN LI ADY
Sbjct: 722  DLADREGRLHTNFVQTGTATGRLSSREPNLQNIPIRDEEGRRIREAFIAKPGNVLISADY 781

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+EL +LAHL+  +++L AF  G D H+RTA  ++                 G  +   
Sbjct: 782  SQIELVVLAHLSQDENLLAAFNEGKDVHARTAALIF-----------------GVSE--- 821

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               KD    +RR AK +NF + YG +   LAR+  ++  +A   ++ ++     +    E
Sbjct: 822  ---KDVHPDQRRMAKTINFGVMYGMSAFRLARELNITRTDAANFIEAYFKTYAGIRRLIE 878

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
                 +    +  T+LGR R  PAI S  ++++   ER A+NTP+QGSAAD+   AML +
Sbjct: 879  ELITNTEQTGYASTILGRRRYIPAINSRNKTEKAGAERVAVNTPIQGSAADIVKTAMLHL 938

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
             +    ++   KLLLQVHDE+ILE P   A  A  +V E M         LR+ L V  +
Sbjct: 939  DERLTKEKSPAKLLLQVHDELILECPKADAAAAAKMVKEVMENAV----KLRIPLRVSVE 994

Query: 1115 CAQNW 1119
              + W
Sbjct: 995  TGKRW 999


>gi|290581196|ref|YP_003485588.1| DNA polymerase I [Streptococcus mutans NN2025]
 gi|449971017|ref|ZP_21814175.1| DNA polymerase I [Streptococcus mutans 2VS1]
 gi|450030178|ref|ZP_21833092.1| DNA polymerase I [Streptococcus mutans G123]
 gi|450056853|ref|ZP_21842259.1| DNA polymerase I [Streptococcus mutans NLML4]
 gi|450068484|ref|ZP_21847188.1| DNA polymerase I [Streptococcus mutans NLML9]
 gi|450095124|ref|ZP_21857210.1| DNA polymerase I [Streptococcus mutans W6]
 gi|450149040|ref|ZP_21875931.1| DNA polymerase I [Streptococcus mutans 14D]
 gi|254998095|dbj|BAH88696.1| DNA polymerase I [Streptococcus mutans NN2025]
 gi|449172527|gb|EMB75150.1| DNA polymerase I [Streptococcus mutans 2VS1]
 gi|449193147|gb|EMB94539.1| DNA polymerase I [Streptococcus mutans G123]
 gi|449206177|gb|EMC06891.1| DNA polymerase I [Streptococcus mutans NLML4]
 gi|449206842|gb|EMC07533.1| DNA polymerase I [Streptococcus mutans NLML9]
 gi|449215907|gb|EMC16073.1| DNA polymerase I [Streptococcus mutans W6]
 gi|449234991|gb|EMC33971.1| DNA polymerase I [Streptococcus mutans 14D]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|431106077|ref|ZP_19497234.1| DNA polymerase I [Enterococcus faecium E1613]
 gi|430569609|gb|ELB08599.1| DNA polymerase I [Enterococcus faecium E1613]
          Length = 881

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 180/346 (52%), Gaps = 36/346 (10%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVIL 1077
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  +  +L   +LLQVHDE++ 
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETDLQATMLLQVHDELVF 839

Query: 1078 EGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 840  EVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|55821733|ref|YP_140175.1| DNA polymerase I [Streptococcus thermophilus LMG 18311]
 gi|55737718|gb|AAV61360.1| DNA-directed DNA polymerase I [Streptococcus thermophilus LMG 18311]
          Length = 879

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 184/337 (54%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQVHDE+ILE P +    
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQVHDEIILEVPRDELLA 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             KA+V E M         L V L  D      WY AK
Sbjct: 847  MKALVKETMEDAV----ELAVPLIADENEGCTWYEAK 879


>gi|52081410|ref|YP_080201.1| DNA polymerase I [Bacillus licheniformis DSM 13 = ATCC 14580]
 gi|404490287|ref|YP_006714393.1| DNA polymerase I [Bacillus licheniformis DSM 13 = ATCC 14580]
 gi|52004621|gb|AAU24563.1| DNA polymerase I [Bacillus licheniformis DSM 13 = ATCC 14580]
 gi|52349288|gb|AAU41922.1| DNA polymerase 1 [Bacillus licheniformis DSM 13 = ATCC 14580]
          Length = 879

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 168/303 (55%), Gaps = 29/303 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+      LI  ADY Q+ELR
Sbjct: 604  KVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSQKGWLIFAADYSQIELR 663

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH++  K++++AF    D H++TAM+++                H  ++   P +   
Sbjct: 664  VLAHISKDKNLIEAFTNDMDVHTKTAMDVF----------------HVSEEEVTPAM--- 704

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
                RR+AK +NF I YG +  GL+++  ++ +EA   ++ +++  Q V  + E   +E+
Sbjct: 705  ----RRQAKAVNFGIVYGISDYGLSQNLGITRKEAAAFIERYFHSFQGVKEYMEETVQEA 760

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P + S   + R+  ER A+NTP+QGSAAD+   AM++++   + 
Sbjct: 761  KQRGYVTTLLSRRRYIPELTSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMADKLKE 820

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
            K L  KLLLQVHDE+I E P +  +V + +V E M         L V L VD     +WY
Sbjct: 821  KNLQAKLLLQVHDELIFEAPEDEIKVLEKLVPEVMEHAL----ELDVPLKVDCASGPSWY 876

Query: 1121 SAK 1123
             AK
Sbjct: 877  DAK 879


>gi|386345469|ref|YP_006041633.1| DNA-directed DNA polymerase I [Streptococcus thermophilus JIM 8232]
 gi|339278930|emb|CCC20678.1| DNA-directed DNA polymerase I [Streptococcus thermophilus JIM 8232]
          Length = 879

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 184/337 (54%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQVHDE+ILE P +    
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQVHDEIILEVPRDELLA 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             KA+V E M         L V L  D      WY AK
Sbjct: 847  MKALVKETMEAAV----ELAVPLIADENEGCTWYEAK 879


>gi|450121472|ref|ZP_21866347.1| DNA polymerase I [Streptococcus mutans ST6]
 gi|449229203|gb|EMC28532.1| DNA polymerase I [Streptococcus mutans ST6]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIRLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|450128385|ref|ZP_21868953.1| DNA polymerase I [Streptococcus mutans U2A]
 gi|449229663|gb|EMC28966.1| DNA polymerase I [Streptococcus mutans U2A]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|449999554|ref|ZP_21824565.1| DNA polymerase I [Streptococcus mutans N29]
 gi|449186936|gb|EMB88742.1| DNA polymerase I [Streptococcus mutans N29]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|450089444|ref|ZP_21855184.1| DNA polymerase I [Streptococcus mutans NV1996]
 gi|449215498|gb|EMC15686.1| DNA polymerase I [Streptococcus mutans NV1996]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|449894435|ref|ZP_21789259.1| DNA polymerase I [Streptococcus mutans SF12]
 gi|450035551|ref|ZP_21835047.1| DNA polymerase I [Streptococcus mutans M21]
 gi|450083729|ref|ZP_21853087.1| DNA polymerase I [Streptococcus mutans N66]
 gi|450111879|ref|ZP_21862898.1| DNA polymerase I [Streptococcus mutans SM6]
 gi|449195338|gb|EMB96666.1| DNA polymerase I [Streptococcus mutans M21]
 gi|449212730|gb|EMC13083.1| DNA polymerase I [Streptococcus mutans N66]
 gi|449223177|gb|EMC22880.1| DNA polymerase I [Streptococcus mutans SM6]
 gi|449255330|gb|EMC53187.1| DNA polymerase I [Streptococcus mutans SF12]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|449908020|ref|ZP_21793444.1| DNA polymerase I [Streptococcus mutans OMZ175]
 gi|449263233|gb|EMC60663.1| DNA polymerase I [Streptococcus mutans OMZ175]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|450074383|ref|ZP_21849342.1| DNA polymerase I [Streptococcus mutans M2A]
 gi|449209123|gb|EMC09661.1| DNA polymerase I [Streptococcus mutans M2A]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|450011268|ref|ZP_21829091.1| DNA polymerase I [Streptococcus mutans A19]
 gi|450024038|ref|ZP_21830987.1| DNA polymerase I [Streptococcus mutans U138]
 gi|449189623|gb|EMB91270.1| DNA polymerase I [Streptococcus mutans A19]
 gi|449192498|gb|EMB93917.1| DNA polymerase I [Streptococcus mutans U138]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|450079605|ref|ZP_21851309.1| DNA polymerase I [Streptococcus mutans N3209]
 gi|449208748|gb|EMC09320.1| DNA polymerase I [Streptococcus mutans N3209]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|450040285|ref|ZP_21836732.1| DNA polymerase I [Streptococcus mutans T4]
 gi|449199187|gb|EMC00266.1| DNA polymerase I [Streptococcus mutans T4]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|450133621|ref|ZP_21870699.1| DNA polymerase I [Streptococcus mutans NLML8]
 gi|449150803|gb|EMB54557.1| DNA polymerase I [Streptococcus mutans NLML8]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|450047398|ref|ZP_21839413.1| DNA polymerase I [Streptococcus mutans N34]
 gi|450140852|ref|ZP_21872998.1| DNA polymerase I [Streptococcus mutans NLML1]
 gi|450146076|ref|ZP_21874835.1| DNA polymerase I [Streptococcus mutans 1ID3]
 gi|450174885|ref|ZP_21884860.1| DNA polymerase I [Streptococcus mutans SM1]
 gi|449148653|gb|EMB52504.1| DNA polymerase I [Streptococcus mutans 1ID3]
 gi|449197703|gb|EMB98858.1| DNA polymerase I [Streptococcus mutans N34]
 gi|449231411|gb|EMC30598.1| DNA polymerase I [Streptococcus mutans NLML1]
 gi|449247966|gb|EMC46233.1| DNA polymerase I [Streptococcus mutans SM1]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|172058211|ref|YP_001814671.1| DNA polymerase I [Exiguobacterium sibiricum 255-15]
 gi|171990732|gb|ACB61654.1| DNA polymerase I [Exiguobacterium sibiricum 255-15]
          Length = 865

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/325 (34%), Positives = 175/325 (53%), Gaps = 31/325 (9%)

Query: 801  IDSLISNFILPLQGSNVSGKNGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQ 859
            +  L S ++  LQ   V  ++G++H        +TGRLS+  PNLQN P   ++  KIR+
Sbjct: 570  LQKLQSTYVEGLQ--KVIKEDGKIHTRFAQTIAQTGRLSSVNPNLQNIPVRIEEGRKIRK 627

Query: 860  AFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVE 918
            AF+ + PG SL  ADY Q+ELR++AH++  K+++ AF    D H++TA +++    N V 
Sbjct: 628  AFVPSEPGWSLYAADYSQIELRVMAHMSEDKTLVQAFLDDADIHTQTASSVFGVAPNDV- 686

Query: 919  TGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKT 978
            TG +                      RR+AK +NF I YG +  GL+++  +S +EA+  
Sbjct: 687  TGNM----------------------RRQAKAVNFGIIYGISDYGLSQNLNISRKEAQDF 724

Query: 979  VDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTP 1038
            +D ++    ++  + +A  +++R++  V TL+ R R  P I S   + R   ER AINTP
Sbjct: 725  IDRYFELFPQIKLFMDAAIEKARMNGFVETLMNRRRNIPDINSKNFNLRGFAERTAINTP 784

Query: 1039 VQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKP 1098
            +QGSAAD+   AML++        L  +LLLQVHDE+I E P E  +  K +V + M + 
Sbjct: 785  IQGSAADIIKKAMLDVHAALEQSPLRARLLLQVHDELIFEAPDEELDALKTLVKQAMEQT 844

Query: 1099 FNGKNNLRVDLSVDAKCAQNWYSAK 1123
                  L V L VD     +WY  K
Sbjct: 845  V----QLSVPLRVDGDAGHSWYETK 865


>gi|449994587|ref|ZP_21822609.1| DNA polymerase I [Streptococcus mutans A9]
 gi|449185198|gb|EMB87096.1| DNA polymerase I [Streptococcus mutans A9]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|55823653|ref|YP_142094.1| DNA polymerase I [Streptococcus thermophilus CNRZ1066]
 gi|55739638|gb|AAV63279.1| DNA-directed DNA polymerase I [Streptococcus thermophilus CNRZ1066]
          Length = 879

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 184/337 (54%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKNKGYVSTLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQVHDE+ILE P +    
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQVHDEIILEVPRDELLA 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             KA+V E M         L V L  D      WY AK
Sbjct: 847  MKALVKETMEAAV----ELAVPLIADENEGCTWYEAK 879


>gi|449876708|ref|ZP_21782917.1| DNA polymerase I [Streptococcus mutans S1B]
 gi|449899195|ref|ZP_21790934.1| DNA polymerase I [Streptococcus mutans R221]
 gi|449904494|ref|ZP_21792700.1| DNA polymerase I [Streptococcus mutans M230]
 gi|449926798|ref|ZP_21800942.1| DNA polymerase I [Streptococcus mutans 4SM1]
 gi|449931636|ref|ZP_21802470.1| DNA polymerase I [Streptococcus mutans 3SN1]
 gi|449982360|ref|ZP_21818241.1| DNA polymerase I [Streptococcus mutans 5SM3]
 gi|450099672|ref|ZP_21858463.1| DNA polymerase I [Streptococcus mutans SF1]
 gi|450171995|ref|ZP_21884340.1| DNA polymerase I [Streptococcus mutans SM4]
 gi|449160284|gb|EMB63559.1| DNA polymerase I [Streptococcus mutans 4SM1]
 gi|449162313|gb|EMB65456.1| DNA polymerase I [Streptococcus mutans 3SN1]
 gi|449174934|gb|EMB77390.1| DNA polymerase I [Streptococcus mutans 5SM3]
 gi|449220791|gb|EMC20631.1| DNA polymerase I [Streptococcus mutans SF1]
 gi|449243224|gb|EMC41673.1| DNA polymerase I [Streptococcus mutans SM4]
 gi|449251923|gb|EMC49919.1| DNA polymerase I [Streptococcus mutans S1B]
 gi|449258726|gb|EMC56288.1| DNA polymerase I [Streptococcus mutans R221]
 gi|449259302|gb|EMC56840.1| DNA polymerase I [Streptococcus mutans M230]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021]
 gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021]
          Length = 1004

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/299 (36%), Positives = 154/299 (51%), Gaps = 26/299 (8%)

Query: 823  RVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH C     T TGRLS+  PNLQN P    +  KIR AF+A PG+ L+ ADY Q+ELR+
Sbjct: 726  RVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQIELRV 785

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+                       VP+  D  
Sbjct: 786  LAHVADIPQLRQAFADGVDIHAMTASEMFG----------------------VPV--DGM 821

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E  K  +
Sbjct: 822  PSEIRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFA 881

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P I+S   S R   ERA+IN P+QGSAAD+   AM+++      
Sbjct: 882  RENGYVETIFGRRAHYPDIRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEA 941

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             +L  ++LLQVHDE+I E      E    +++  M        ++RV L VDA+ A NW
Sbjct: 942  AKLSARMLLQVHDELIFEVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNW 1000



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 104/265 (39%), Gaps = 68/265 (25%)

Query: 415 DLLDGG-------GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMH 467
           DLL GG       GR+ L+      EDPS+ KV  N  +   V++ +G+ +  F  DTM 
Sbjct: 458 DLLGGGPVDSQVPGRETLSRLKELLEDPSVLKVGQNLKYGYLVMKRHGIAMRSFD-DTML 516

Query: 468 MARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFG 525
           M+ + D+     G + +++L                        E ++G   I+ KD+ G
Sbjct: 517 MSYVLDAG---NGAHGMDSLA-----------------------ERWLGHTPIAYKDVTG 550

Query: 526 RRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLD 585
                     G+ S      ++ +       +Y+A D+   L+L+  LK +L        
Sbjct: 551 ---------TGRSSLTFDFVDIDKA-----TAYAAEDADIALRLWHVLKPRL-------- 588

Query: 586 GKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKW 645
                 K +   Y+   +P   +L  ME  G+ VDR+ LS +         A  +   + 
Sbjct: 589 ----AAKGLTRVYERLERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYRL 644

Query: 646 ASKHCPDAKYMNVGSDTQLRQLLFG 670
           A       +   +GS  QL  +LFG
Sbjct: 645 A------GETFTIGSPKQLGDILFG 663


>gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis]
          Length = 871

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 188/354 (53%), Gaps = 41/354 (11%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI---LPLQGSNVSGKNGRVHCSL-NI 830
            ++T+ E  E      D +S + E   +  L S +I   LPL       +N RVH +   +
Sbjct: 550  YSTDSEVLEQLTAYNDIVSEIIEYRQLTKLKSTYIEGFLPLMD-----ENDRVHSNFKQM 604

Query: 831  NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCK 889
               TGR+S+  PNLQN P  E+   +IR+AFI    +  IV ADY Q+ELR+LAHL+  +
Sbjct: 605  VAATGRISSTEPNLQNIPVREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHLSEDE 664

Query: 890  SMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAK 949
             +++AF    D H RTA  ++                     PP    ++     RR AK
Sbjct: 665  KLIEAFMNNEDIHLRTASEVFKV-------------------PP----QNVTPEMRRAAK 701

Query: 950  MLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTL 1009
            ++NF I YG +  GLA+D K+S +EAK+ +D ++ + + V  + E   + ++ + +V T+
Sbjct: 702  VVNFGIIYGISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTI 761

Query: 1010 LGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLL 1069
            + R R  P I S   +QR+  ER A+NTP+QGSAAD+   AM+++ +  +   L  +L+L
Sbjct: 762  MNRRRYIPEINSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNLKSRLIL 821

Query: 1070 QVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            QVHDE++++   +  E+ K I+ E M         L+V L V+     NW+ AK
Sbjct: 822  QVHDELVVDTYKDELELVKEILKENMENVI----KLKVPLVVEIGVGPNWFLAK 871


>gi|431412450|ref|ZP_19511885.1| DNA polymerase I [Enterococcus faecium E1630]
 gi|431759338|ref|ZP_19547952.1| DNA polymerase I [Enterococcus faecium E3346]
 gi|430589405|gb|ELB27533.1| DNA polymerase I [Enterococcus faecium E1630]
 gi|430626138|gb|ELB62724.1| DNA polymerase I [Enterococcus faecium E3346]
          Length = 881

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/348 (35%), Positives = 182/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++                 G +K       D   + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----------------GIEKA-----DDVTPNMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKKYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V E M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKEVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|347755827|ref|YP_004863391.1| DNA polymerase I [Candidatus Chloracidobacterium thermophilum B]
 gi|347588345|gb|AEP12875.1| DNA polymerase I [Candidatus Chloracidobacterium thermophilum B]
          Length = 890

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/308 (37%), Positives = 159/308 (51%), Gaps = 28/308 (9%)

Query: 817  VSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V    GR+H +        GRLS+ RPNLQN P   +   + R+AF+A  G  LI ADY 
Sbjct: 610  VHPATGRLHTTFTQTVTATGRLSSVRPNLQNIPIRTEMGRRTRRAFVAEEGCRLISADYS 669

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+     M  AF+AG D H RTA +++                 G   P   
Sbjct: 670  QIELRLLAHITEDARMTAAFQAGEDIHERTARDVF-----------------GAQTP--- 709

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
               +   + RR AK  NF IAYG    GLAR+  +  +EAKK +D ++     +  + E 
Sbjct: 710  ---EELQATRRLAKATNFGIAYGVGAYGLARNVGIGRKEAKKAIDAYFAAYPGIRRYMEE 766

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              + +R    V TL GR RR P + S   + R+  ER AIN P+QG+AAD+   AM+E++
Sbjct: 767  TPENARRTGVVRTLYGRLRRMPDLNSRNFTVRSRAEREAINAPIQGTAADLMKLAMIEVA 826

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
            +         +L+LQVHDE++LE P++ A    A+V   M     G   LRV L V+A+ 
Sbjct: 827  RRLPAAFPRARLVLQVHDELLLEAPADDAPGVAALVRSVM----EGVATLRVPLVVEARI 882

Query: 1116 AQNWYSAK 1123
              NW  AK
Sbjct: 883  GTNWLEAK 890


>gi|309776902|ref|ZP_07671872.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915313|gb|EFP61083.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
          Length = 861

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 169/305 (55%), Gaps = 28/305 (9%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            K+G++H   N I T+TGRLS+  PNLQN    +++  +IR+AF+A  G+ L+ ADY Q+E
Sbjct: 584  KDGKIHTIFNQIQTQTGRLSSSEPNLQNISVRDEEGKEIRKAFVASEGHVLLSADYSQIE 643

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+A+ + M+DAF  G D H++TAM ++    ++V+                    
Sbjct: 644  LRMLAHMADEEVMIDAFNHGIDIHTKTAMQIFDVDHDSVD-------------------- 683

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               A+ RR AK +NF I YG++  GL+    +S +EA   +D ++     + ++ ++  +
Sbjct: 684  ---ANMRRSAKTVNFGIVYGQSDFGLSEQLGISRKEAHAFIDKYFASYPNIKSFMDSTIQ 740

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
                + +V TL  R R    I       R   +RAA+N P+QGSAAD+   AM+ I +  
Sbjct: 741  FCEENGYVKTLFNRRRYIKEISDKNYMMREFGKRAAMNAPIQGSAADLIKLAMIHIFERM 800

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            R +++  +++LQ+HDE+I +   +  E  K+IV E M +       LRV L  +A   ++
Sbjct: 801  RREQVKSRMILQIHDELIFDVWEDELEQMKSIVEEGMQQAM----KLRVPLIAEANIGKS 856

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 857  WYEAK 861


>gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
 gi|451967432|ref|ZP_21920674.1| DNA polymerase I [Edwardsiella tarda NBRC 105688]
 gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
 gi|451313753|dbj|GAC66036.1| DNA polymerase I [Edwardsiella tarda NBRC 105688]
          Length = 930

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/310 (36%), Positives = 162/310 (52%), Gaps = 34/310 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            VS   GRVH S +   T TGRLS+  PNLQN P    +  +IRQAFIA  G+ ++ ADY 
Sbjct: 650  VSPLTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRSDEGRRIRQAFIAPAGSKIVAADYS 709

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  + +L+AF AG D H  TA  ++     AV                  
Sbjct: 710  QIELRIMAHLSGDRGLLEAFAAGKDIHRATAAEVFGLPLEAVT----------------- 752

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                  A +RR AK +NF + YG +  GLAR   +   EA++ +DL++     VL + E 
Sbjct: 753  ------ADQRRSAKAINFGLIYGMSAFGLARQLNIGRNEAQRYMDLYFERYPGVLAYMER 806

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             ++++    +V TL GR    P I +    +R   ERAAIN P+QG+AAD+   AM+ + 
Sbjct: 807  TRQQASEQGYVETLDGRRLYLPEINARNAMRRKAAERAAINAPMQGTAADIIKRAMIAVD 866

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKP---FNGKNNLRVDLSVD 1112
               +  +   ++++QVHDE++ E P       +A+V E +S       G   L V L VD
Sbjct: 867  AWLQQSQPQVRMIMQVHDELVFEVP-------EALVDEVVSHVRTLMEGSLALAVPLKVD 919

Query: 1113 AKCAQNWYSA 1122
              C +NW  A
Sbjct: 920  IGCGENWDQA 929


>gi|339640466|ref|ZP_08661910.1| DNA-directed DNA polymerase [Streptococcus sp. oral taxon 056 str.
            F0418]
 gi|339453735|gb|EGP66350.1| DNA-directed DNA polymerase [Streptococcus sp. oral taxon 056 str.
            F0418]
          Length = 880

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 180/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  +  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIGAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQVHDE++LE P++    A+
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAAR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  QLVKETMEAAI----ELAVPLVADENAGQTWYEAK 880


>gi|450107854|ref|ZP_21861212.1| DNA polymerase I [Streptococcus mutans SF14]
 gi|449221346|gb|EMC21132.1| DNA polymerase I [Streptococcus mutans SF14]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|449992712|ref|ZP_21822375.1| DNA polymerase I [Streptococcus mutans NVAB]
 gi|449179488|gb|EMB81698.1| DNA polymerase I [Streptococcus mutans NVAB]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|449950508|ref|ZP_21808293.1| DNA polymerase I [Streptococcus mutans 11SSST2]
 gi|450053672|ref|ZP_21841639.1| DNA polymerase I [Streptococcus mutans NFSM1]
 gi|449167189|gb|EMB70091.1| DNA polymerase I [Streptococcus mutans 11SSST2]
 gi|449198688|gb|EMB99792.1| DNA polymerase I [Streptococcus mutans NFSM1]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|449919251|ref|ZP_21797809.1| DNA polymerase I [Streptococcus mutans 1SM1]
 gi|449159604|gb|EMB62930.1| DNA polymerase I [Streptococcus mutans 1SM1]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|449942976|ref|ZP_21806234.1| DNA polymerase I [Streptococcus mutans 11A1]
 gi|449149750|gb|EMB53538.1| DNA polymerase I [Streptococcus mutans 11A1]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|387786851|ref|YP_006251947.1| DNA polymerase I [Streptococcus mutans LJ23]
 gi|379133252|dbj|BAL70004.1| DNA polymerase I [Streptococcus mutans LJ23]
          Length = 878

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|449966620|ref|ZP_21812399.1| DNA polymerase I [Streptococcus mutans 15VF2]
 gi|449169900|gb|EMB72650.1| DNA polymerase I [Streptococcus mutans 15VF2]
          Length = 878

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|450064388|ref|ZP_21845362.1| DNA polymerase I [Streptococcus mutans NLML5]
 gi|449203798|gb|EMC04644.1| DNA polymerase I [Streptococcus mutans NLML5]
          Length = 878

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|421852648|ref|ZP_16285334.1| DNA polymerase I [Acetobacter pasteurianus subsp. pasteurianus LMG
            1262 = NBRC 106471]
 gi|371479152|dbj|GAB30537.1| DNA polymerase I [Acetobacter pasteurianus subsp. pasteurianus LMG
            1262 = NBRC 106471]
          Length = 933

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 161/307 (52%), Gaps = 29/307 (9%)

Query: 818  SGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQ 876
            +G+N RVH S  +  T TGRLS+  PNLQN P   ++  +IRQAFIA PG  LI ADY Q
Sbjct: 653  AGRNDRVHTSFQMAITSTGRLSSTDPNLQNIPVRTEEGTRIRQAFIAPPGKKLISADYSQ 712

Query: 877  LELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPL 936
            +ELR+LA +AN  ++ +AF+ G D H+RTA  ++           + LE  G D      
Sbjct: 713  IELRLLADVANIPALREAFQLGQDIHARTASEVF----------NIPLE--GMD------ 754

Query: 937  LKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEAR 996
                 A  RR+AK +NF I YG +  GL +   +   EA+  +D ++     +  + E  
Sbjct: 755  -----ALTRRRAKAINFGIIYGISAFGLGKQLGIPAGEARTYIDAYFARYPGIRDYMERM 809

Query: 997  KKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISK 1056
            ++E+R   +V T  GR    P I   + ++R + ER AIN P+QG AAD+   AM+ +  
Sbjct: 810  REEARTHGYVLTPFGRRCYVPGIHEKSAARRQYAERQAINAPLQGGAADIIKRAMVHLPL 869

Query: 1057 NARLKELG-WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
              +    G  ++LLQVHDE++ E     AE   AI+   M        +L V L V+   
Sbjct: 870  ALQKAGFGETRMLLQVHDELLFETDESEAEAVAAIIKNVM----EAAADLAVPLVVETGI 925

Query: 1116 AQNWYSA 1122
             QNW  A
Sbjct: 926  GQNWAEA 932


>gi|335430413|ref|ZP_08557307.1| DNA polymerase I [Haloplasma contractile SSD-17B]
 gi|334888180|gb|EGM26484.1| DNA polymerase I [Haloplasma contractile SSD-17B]
          Length = 878

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 182/343 (53%), Gaps = 31/343 (9%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
            ++ +E    I  + E  +I  L S +I  L+ +    ++G++H   N   T TGRLS+  
Sbjct: 565  EKLKEKHPIIEKVLEYRTITKLHSTYIEGLKDAIF--EDGKIHTIFNQTLTSTGRLSSTE 622

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGD 900
            PNLQN P   ++   IR+AF+A   + +I+A DY Q+ELRILAH++  +++++AF    D
Sbjct: 623  PNLQNIPIRYEEGRNIRKAFVASSEDGVILAADYSQIELRILAHMSGAENLMEAFIHDMD 682

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H++TAM+++                 G     V  L       RR+AK +NF I YG +
Sbjct: 683  IHTKTAMDVF-----------------GVKHEEVTSLM------RRQAKAVNFGIVYGIS 719

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GL+ +  +S +EA+K +D +      +  + +    +++++ +  T+L R R  P + 
Sbjct: 720  AFGLSENLNISQKEAQKFIDKYLETYPGIKEYMDDIVAKAKLNGYAETMLKRRRYIPELT 779

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGP 1080
            +    +R   ER A+N P+QGSAAD+   AM+ +      +EL  KLL+QVHDE+IL+ P
Sbjct: 780  NKNYMRRQFGERTAMNAPIQGSAADIIKIAMVNVFNRISKEELNTKLLIQVHDELILDVP 839

Query: 1081 SESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E  E  K +V E M   F     L V L VD    ++WY AK
Sbjct: 840  KEELEQVKTLVKEEMENAF----KLNVPLKVDMDYGKSWYEAK 878


>gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
            571]
 gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
            571]
          Length = 867

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 184/345 (53%), Gaps = 40/345 (11%)

Query: 792  ISALCEVCSIDSLISNFI-----LPLQGSNVSG------KNGRVHCSLNINTE-TGRLSA 839
            +  L E+   + ++   I     + L+ + + G      K+ +VH +       TGR+S+
Sbjct: 550  MEVLVELIPYNEIVGEIIEYRQLMKLKSTYIDGFMPIMDKDDKVHSTFKQTVAATGRISS 609

Query: 840  RRPNLQNQPALEKDRYKIRQAFIA-VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
              PNLQN P  ++   +IR+AFI+   G  ++ ADY Q+ELR+LAHL+    ++++F   
Sbjct: 610  TEPNLQNIPVRDEFGRRIRKAFISSFQGGYIVSADYSQIELRVLAHLSEDIKLIESFLNN 669

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H RTA  ++      V TG++                      RR+AK +NF I YG
Sbjct: 670  EDIHLRTASEVFKIAPEEV-TGEM----------------------RRRAKAVNFGIVYG 706

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GL+RD K+S +EAK+ +D +++  + V  + ++  K +R + +V T+L R R  P 
Sbjct: 707  ISDYGLSRDLKISRKEAKEYIDNYFDRYKGVKNYIDSVVKFARENGYVTTILNRRRYIPE 766

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            I S   +QR+  ER A+NTP+QGSAAD+   +M+++    + + L  KL+LQ+HDE+I++
Sbjct: 767  INSKNYNQRSFGERMAMNTPIQGSAADIIKMSMVKVYNELKSRSLKSKLILQIHDELIVD 826

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
               +  E+ K ++   M         LRV L VD    +NWY AK
Sbjct: 827  TFPDEVEIVKNLLKTIMENVI----KLRVPLVVDIGYGKNWYDAK 867


>gi|338534293|ref|YP_004667627.1| DNA polymerase I [Myxococcus fulvus HW-1]
 gi|337260389|gb|AEI66549.1| DNA polymerase I [Myxococcus fulvus HW-1]
          Length = 908

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 170/330 (51%), Gaps = 30/330 (9%)

Query: 794  ALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEK 852
            A+ E  S+  L S ++  L    +   +GR+H + +   T TGRLS+  PNLQN P    
Sbjct: 607  AIIEYRSLSKLKSTYLDTL--PTLVAADGRIHTTYHQAATATGRLSSTDPNLQNIPVRTD 664

Query: 853  DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
               +IR+AF+A  G+ L+ ADY Q+ELR+LAH+AN   +++AF    D H+RTA  ++  
Sbjct: 665  LGREIRRAFVAAEGHQLVSADYSQVELRLLAHIANDAVLIEAFLHDEDIHTRTAAEVFGV 724

Query: 913  IRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSV 972
             +  V+  Q                       RR AKM+NF IAYG +P GLA    ++ 
Sbjct: 725  AKEQVDREQ-----------------------RRVAKMVNFGIAYGLSPHGLAARLGIAQ 761

Query: 973  EEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIER 1032
            + A+  ++ ++     +  + E     +R   +V TL GR R    + S  R      ER
Sbjct: 762  DVARDIIERYFTRYAGIKRYLEETVSVARKTGYVETLYGRRRYMADLNSKNRGVAQAAER 821

Query: 1033 AAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVV 1092
            AAIN P+QG+AAD+   AML +      ++L  ++LLQVHDE++ E P    E  KA+ V
Sbjct: 822  AAINMPIQGTAADLIKKAMLAVDAALEAQKLSARMLLQVHDELLFEAPDAEVEAVKALAV 881

Query: 1093 ECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            + MS       +L+V L VD    ++W  A
Sbjct: 882  KAMS----SVADLKVPLKVDVGAGRSWADA 907


>gi|384531329|ref|YP_005715417.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
 gi|384538052|ref|YP_005722137.1| DNA polymerase I [Sinorhizobium meliloti SM11]
 gi|407722514|ref|YP_006842176.1| DNA polymerase I [Sinorhizobium meliloti Rm41]
 gi|433611964|ref|YP_007188762.1| DNA polymerase I [Sinorhizobium meliloti GR4]
 gi|333813505|gb|AEG06174.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
 gi|336034944|gb|AEH80876.1| DNA polymerase I [Sinorhizobium meliloti SM11]
 gi|407320746|emb|CCM69350.1| DNA polymerase I [Sinorhizobium meliloti Rm41]
 gi|429550154|gb|AGA05163.1| DNA polymerase I [Sinorhizobium meliloti GR4]
          Length = 1004

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/299 (36%), Positives = 154/299 (51%), Gaps = 26/299 (8%)

Query: 823  RVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH C     T TGRLS+  PNLQN P    +  KIR AF+A PG+ L+ ADY Q+ELR+
Sbjct: 726  RVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQIELRV 785

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+                       VP+  D  
Sbjct: 786  LAHVADIPQLRQAFADGVDIHAMTASEMFG----------------------VPV--DGM 821

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E  K  +
Sbjct: 822  PSEIRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFA 881

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P I+S   S R   ERA+IN P+QGSAAD+   AM+++      
Sbjct: 882  RENGYVETIFGRRAHYPDIRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEA 941

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             +L  ++LLQVHDE+I E      E    +++  M        ++RV L VDA+ A NW
Sbjct: 942  AKLSARMLLQVHDELIFEVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNW 1000


>gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|384043126|ref|YP_005481870.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12]
 gi|384051643|ref|YP_005478706.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03]
 gi|384054750|ref|YP_005487844.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07]
 gi|384057985|ref|YP_005490652.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22]
 gi|384060626|ref|YP_005499754.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26]
 gi|384063918|ref|YP_005484560.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32]
 gi|384119927|ref|YP_005502551.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03]
 gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07]
 gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22]
 gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26]
 gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32]
 gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12]
          Length = 933

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 161/307 (52%), Gaps = 29/307 (9%)

Query: 818  SGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQ 876
            +G+N RVH S  +  T TGRLS+  PNLQN P   ++  +IRQAFIA PG  LI ADY Q
Sbjct: 653  AGRNDRVHTSFQMAITSTGRLSSTDPNLQNIPVRTEEGTRIRQAFIAPPGKKLISADYSQ 712

Query: 877  LELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPL 936
            +ELR+LA +AN  ++ +AF+ G D H+RTA  ++           + LE  G D      
Sbjct: 713  IELRLLADVANIPALREAFQLGQDIHARTASEVF----------NIPLE--GMD------ 754

Query: 937  LKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEAR 996
                 A  RR+AK +NF I YG +  GL +   +   EA+  +D ++     +  + E  
Sbjct: 755  -----ALTRRRAKAINFGIIYGISAFGLGKQLGIPAGEARTYIDAYFARYPGIRDYMERM 809

Query: 997  KKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISK 1056
            ++E+R   +V T  GR    P I   + ++R + ER AIN P+QG AAD+   AM+ +  
Sbjct: 810  REEARTHGYVLTPFGRRCYVPGIHEKSAARRQYAERQAINAPLQGGAADIIKRAMVHLPL 869

Query: 1057 NARLKELG-WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
              +    G  ++LLQVHDE++ E     AE   AI+   M        +L V L V+   
Sbjct: 870  ALQKAGFGETRMLLQVHDELLFETDESEAEAVAAIIKNVM----EAAADLAVPLVVETGI 925

Query: 1116 AQNWYSA 1122
             QNW  A
Sbjct: 926  GQNWAEA 932


>gi|449882750|ref|ZP_21784790.1| DNA polymerase I [Streptococcus mutans SA38]
 gi|449250559|gb|EMC48615.1| DNA polymerase I [Streptococcus mutans SA38]
          Length = 878

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565]
 gi|423211776|ref|ZP_17198309.1| DNA polymerase I [Aeromonas veronii AER397]
 gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565]
 gi|404612997|gb|EKB10041.1| DNA polymerase I [Aeromonas veronii AER397]
          Length = 921

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 177/358 (49%), Gaps = 37/358 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  +    L E   +  L S +   LPL    +  + GRVH 
Sbjct: 596  KGAPSTAEEVLA---ELAETYELPQLLMEHRGLAKLKSTYTDKLPLM---IKPQTGRVHT 649

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 650  SYHQAVAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHL 709

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +L AF  G D H  TA  ++    +AV T                         R
Sbjct: 710  SGDKGLLTAFAEGKDIHKATAAEVFGVAIDAVTTDM-----------------------R 746

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GLA+   +   EA+K +DL++     VL + E  ++++    +
Sbjct: 747  RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQAEAQGY 806

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKELG 1064
            V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R +++  
Sbjct: 807  VETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDSWIRGIEDES 866

Query: 1065 WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
             ++L+QVHDE++ E   E  E   AI+ E MS        L V L V+A    NW  A
Sbjct: 867  IRMLMQVHDELVFEIREEKLEEYIAIIKEKMS----AAAELDVPLVVEAGTGDNWDQA 920


>gi|422844108|ref|ZP_16890818.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp.
            lactis DSM 20072]
 gi|325685808|gb|EGD27881.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp.
            lactis DSM 20072]
          Length = 889

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 184/344 (53%), Gaps = 33/344 (9%)

Query: 784  EAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRP 842
            + +E    +S + E   I  + S ++  L    +  ++GR+H   L   T TGRLS+  P
Sbjct: 575  QLKEQSPVVSDILEYRQISKIQSTYVKGLLDV-IDKRDGRIHTRYLQTLTATGRLSSVDP 633

Query: 843  NLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            NLQN PA  ++  +IR+AF+ + P   +   DY Q+ELR+LAH++   +M +AFK G D 
Sbjct: 634  NLQNIPARTEEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDI 693

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TAM ++ H+ +  E   +                     +RR+AK +NF I YG + 
Sbjct: 694  HAHTAMKIF-HLSSVDEVTSL---------------------QRRRAKAVNFGIVYGISD 731

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GL+++  +S ++AK+ +D ++ +   +  + +   K++R   +  T++ R R  P I +
Sbjct: 732  YGLSKNLDISRKQAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIMHRRRYLPDIHA 791

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEG 1079
               + R+  ER AIN+P+QGSAAD+   AM+ + K  +L ELG   K+++QVHDE+I + 
Sbjct: 792  KNFNVRSFAERTAINSPIQGSAADIMKIAMINMQK--KLDELGLKTKMVVQVHDELIFDV 849

Query: 1080 PSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            P++  E  + IV   M         L V L  DA    +WY AK
Sbjct: 850  PADELETIQKIVPSVMQAAV----KLDVPLVADAGWGHDWYEAK 889


>gi|436843155|ref|YP_007327533.1| DNA polymerase I [Desulfovibrio hydrothermalis AM13 = DSM 14728]
 gi|432172061|emb|CCO25434.1| DNA polymerase I [Desulfovibrio hydrothermalis AM13 = DSM 14728]
          Length = 889

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/355 (32%), Positives = 185/355 (52%), Gaps = 33/355 (9%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            KGA+++ N +        E    I+ + E   ++ L S ++ PL    + G +GR+H + 
Sbjct: 566  KGALSTANSVLEKLSGQHEI---ITDILEFRKMEKLRSTYLEPL--PKLVGPDGRIHTNF 620

Query: 829  N-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N + T TGRLS+  PNLQN P   +   ++R  F A  G  L  ADY Q+ELR+LAH + 
Sbjct: 621  NQLATATGRLSSSGPNLQNIPIRGEQGKRMRACFTAGEGMRLAAADYSQVELRVLAHFSG 680

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
              +++ AF+   D HSRTA  ++                   D+ P  + +D    ER  
Sbjct: 681  DPTLVSAFEQDEDIHSRTAALLF-------------------DRDPADITRD----ERGN 717

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF + YG  P  L+++  + + EAK+ +  ++ +   +  + ++  ++ R   +V 
Sbjct: 718  AKTINFGLIYGMGPQKLSQELGIKLNEAKEFIAKYFEKLGVLKEFYDSVVEQGRDKGYVT 777

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            TL GR R  P + S +    +   R AINT +QGSAAD+   AM++++ N  +K LG +L
Sbjct: 778  TLSGRRRLLPELHSKSPQIISQARRQAINTVIQGSAADIIKMAMIKVADNQEIKHLGGRL 837

Query: 1068 LLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            +LQ+HDE+++EGP ES E    ++ E M        +L V L VD    +NW  A
Sbjct: 838  ILQIHDELLVEGPEESIEEIGKLLQEDM----QSVTSLVVPLKVDLGLGRNWAQA 888


>gi|311069405|ref|YP_003974328.1| DNA polymerase I [Bacillus atrophaeus 1942]
 gi|419819937|ref|ZP_14343555.1| DNA polymerase I [Bacillus atrophaeus C89]
 gi|310869922|gb|ADP33397.1| DNA polymerase I [Bacillus atrophaeus 1942]
 gi|388476056|gb|EIM12761.1| DNA polymerase I [Bacillus atrophaeus C89]
          Length = 880

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 182/336 (54%), Gaps = 30/336 (8%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQP 848
            D +S + +   I  L S +I  L    +   + +VH   N   T+TGRLS+  PNLQN P
Sbjct: 573  DIVSYILQYRQIGKLQSTYIEGLL-KVIRKDSHKVHTRFNQALTQTGRLSSTDPNLQNIP 631

Query: 849  ALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
               ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF    D H++TAM
Sbjct: 632  IRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDVHTKTAM 691

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
            +++   ++ V                 P +       RR+AK +NF I YG +  GL+++
Sbjct: 692  DVFHVAQDEV----------------TPAM-------RRQAKAVNFGIVYGISDYGLSQN 728

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ +EA   ++ +    + V  + E   +E++   +V TL+ R R  P + S   + R
Sbjct: 729  LGITRKEAAAFIERYLESFKGVKVYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNLR 788

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVA 1087
            +  ER A+NTP+QGSAAD+   AM++++   + K+L  KLLLQVHDE+I E P E  ++ 
Sbjct: 789  SFAERTAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKAKLLLQVHDELIFEAPKEEIKLL 848

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + +V E M        NL V L VD     +WY AK
Sbjct: 849  EKLVPEVMEHAL----NLDVPLKVDFASGPSWYDAK 880


>gi|379706153|ref|YP_005204612.1| DNA polymerase I [Streptococcus infantarius subsp. infantarius CJ18]
 gi|374682852|gb|AEZ63141.1| DNA polymerase I [Streptococcus infantarius subsp. infantarius CJ18]
          Length = 878

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 177/335 (52%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ  +   K+G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VSKILEYRQIAKLQSTYIVGLQ--DFILKDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    + ++++ DY Q+ELR+LAH++N + ++ AF+ G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPETADEVLLSSDYSQIELRVLAHISNDEHLIAAFRKGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF I YG +  GLA + 
Sbjct: 690  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGIVYGISDYGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +  + AK+ ++ ++     +  + E   ++++   +V TL  R R  P I +   + R 
Sbjct: 728  GIPRKVAKQYIETYFERYPGIKDYMERVVRDAKDKGYVETLFHRRRELPDINARNFNVRQ 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + K         K+LLQVHDE+ILE P +  E  +
Sbjct: 788  FAERTAINSPIQGSAADILKIAMINLDKALVDGRFKTKMLLQVHDEIILEVPKDELEAIE 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADESAGQTWYEAK 878


>gi|421892044|ref|ZP_16322762.1| DNA polymerase I [Streptococcus pyogenes NS88.2]
 gi|379982207|emb|CCG26484.1| DNA polymerase I [Streptococcus pyogenes NS88.2]
          Length = 880

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 183/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 621  SVDPNLQNIPIRLEQGRL-IRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFN 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK       D  A++RR AK +NF I 
Sbjct: 680  EGADIHTSTAMRVF-----------------GIDKAA-----DVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  +      K+LLQVHDE++
Sbjct: 778  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGSFRAKMLLQVHDEIV 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P++     K +V + M        +L V L VD    Q+WY AK
Sbjct: 838  LEVPNDELTAIKKLVKDTMEAAV----DLAVPLCVDESTGQSWYEAK 880


>gi|417917036|ref|ZP_12560599.1| DNA-directed DNA polymerase [Streptococcus parasanguinis SK236]
 gi|342831200|gb|EGU65522.1| DNA-directed DNA polymerase [Streptococcus parasanguinis SK236]
          Length = 881

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  + S +++ LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 576  VSKILEYRQIAKIQSTYVIGLQDWIL--EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 633

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + ++DAFK G D H+ TAM 
Sbjct: 634  LEQGRL-IRKAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMR 692

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                   +KP     +D   ++RR AK +NF + YG +  GL+ + 
Sbjct: 693  VF-----------------NIEKP-----EDVTPNDRRNAKAVNFGVVYGISDFGLSNNL 730

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S +EAK  ++ ++     +  + E   +E+R   +V TL  R R  P I S   + R 
Sbjct: 731  GISRKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREIPDINSRNFNVRG 790

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +         K+LLQVHDE++L+ PS+     K
Sbjct: 791  FAERTAINSPIQGSAADILKIAMIHLDQALERGAYKTKMLLQVHDEIVLQVPSDELAAIK 850

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    + WY AK
Sbjct: 851  ELVKETMESAI----ELAVPLEADENEGKTWYEAK 881


>gi|451981579|ref|ZP_21929931.1| DNA polymerase I [Nitrospina gracilis 3/211]
 gi|451761252|emb|CCQ91195.1| DNA polymerase I [Nitrospina gracilis 3/211]
          Length = 900

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/318 (36%), Positives = 170/318 (53%), Gaps = 29/318 (9%)

Query: 806  SNFILPLQGSNVSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAV 864
            S ++  LQG  V  + GR+H S N     TGRLS+  PNLQN P   +   +IR+AF+A 
Sbjct: 610  STYVDALQG-EVFKETGRIHTSYNQTVAATGRLSSSDPNLQNIPIRSEVGREIRKAFLAD 668

Query: 865  PGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLL 924
             G  L+ ADY Q+ELR+LAHL+   +++ AFK   D HSRTA  ++         GQ + 
Sbjct: 669  KGCWLLSADYSQIELRLLAHLSGDPALIRAFKNNEDIHSRTAAEIF---------GQPID 719

Query: 925  EWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYN 984
            +   E               RR AK +NF I YG +  GL+R  K++ +EAK  +D +++
Sbjct: 720  QVDPEG--------------RRMAKAVNFGIVYGLSAYGLSRQLKITPKEAKTFIDQYFD 765

Query: 985  ERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAA 1044
              + V T+ +   + +R + +  T++ R R  P I S  R  R   ER AIN+PVQGSAA
Sbjct: 766  LYKNVKTFMDETIEMARHNGYTKTMMNRRRYMPDINSKNRQVREAAERTAINSPVQGSAA 825

Query: 1045 DVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNN 1104
            D    AML I      ++L  +++LQVHDE+I E P    +  + +V + M     G   
Sbjct: 826  DYIKMAMLHIHDKMLKEKLESRMILQVHDELIFECPEGEKKTMEPLVKKAM----EGVAK 881

Query: 1105 LRVDLSVDAKCAQNWYSA 1122
            L+V L+V+    +NW  A
Sbjct: 882  LKVPLTVNMDWGENWSDA 899



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 51/200 (25%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L++  P  EDP ++K  HN  +D  VL N G+++ G   D+M  + + D SRR+   +S
Sbjct: 376 VLDKLKPLLEDPKLEKYGHNIKYDLIVLHNEGVQLQGIVFDSMLASYVLDPSRRS---HS 432

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           L+ L                                  + F    +K    AG  S    
Sbjct: 433 LDDLA--------------------------------LETFQHTTIKYSDVAGSASKQVG 460

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            +E++ E       Y+A DS  T +L +  +K+L             G+ + + Y+    
Sbjct: 461 FDEVEIERAS---EYAAEDSDVTYRLTRHFEKQL------------KGEDL-ELYETIEL 504

Query: 604 PFGEILVKMETEGMLVDREY 623
           P  E+L +ME  G+L+D ++
Sbjct: 505 PLLEVLAEMELTGVLLDTDH 524


>gi|443632243|ref|ZP_21116423.1| DNA polymerase I [Bacillus subtilis subsp. inaquosorum KCTC 13429]
 gi|443348358|gb|ELS62415.1| DNA polymerase I [Bacillus subtilis subsp. inaquosorum KCTC 13429]
          Length = 880

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 185/347 (53%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCSLN-INTETGRL 837
            + D +  L +   I   I  +  I  LQ + + G        + +VH   N   T+TGRL
Sbjct: 561  SADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTGRL 620

Query: 838  SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFK 896
            S+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF 
Sbjct: 621  SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDQNLIEAFT 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
               D H++TAM+++ H+               ED        +  ++ RR+AK +NF I 
Sbjct: 681  NDMDIHTKTAMDVF-HV--------------AED--------EVTSAMRRQAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+++  ++ +EA   +D +    Q V  + E   ++++   +V TL+ R R  
Sbjct: 718  YGISDYGLSQNLGITRKEAGAFIDRYLESFQGVKAYMEDSVQDAKQKGYVTTLMHRRRYI 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P + S   + R+  ER A+NTP+QGSAAD+   AM++++   + K+L  +LLLQVHDE+I
Sbjct: 778  PELTSRNFNIRSFAERTAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELI 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E P E  E+ + +V E M         L V L VD     +WY AK
Sbjct: 838  FEAPQEEIEILEKLVPEVMEHAL----ALDVPLKVDFASGPSWYDAK 880


>gi|345100599|pdb|2XY6|A Chain A, Crystal Structure Of A Salicylic Aldehyde Basepair In
            Complex With Fragment Dna Polymerase I From Bacillus
            Stearothermophilus
          Length = 581

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 172/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 306  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 365

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 366  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 402

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 403  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 462

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 463  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 520

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 521  KEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 576

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 577  WYDAK 581


>gi|450182357|ref|ZP_21888281.1| DNA polymerase I [Streptococcus mutans 24]
 gi|449244888|gb|EMC43247.1| DNA polymerase I [Streptococcus mutans 24]
          Length = 878

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQVHDE++LE P+   E  +
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAEFEAIQ 847

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 848  KLVKETMESAI----ELSVPLVADENAGQTWYEAK 878


>gi|334318202|ref|YP_004550821.1| DNA polymerase I [Sinorhizobium meliloti AK83]
 gi|418402693|ref|ZP_12976200.1| DNA polymerase I [Sinorhizobium meliloti CCNWSX0020]
 gi|334097196|gb|AEG55207.1| DNA polymerase I [Sinorhizobium meliloti AK83]
 gi|359503350|gb|EHK75905.1| DNA polymerase I [Sinorhizobium meliloti CCNWSX0020]
          Length = 1004

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/299 (36%), Positives = 154/299 (51%), Gaps = 26/299 (8%)

Query: 823  RVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH C     T TGRLS+  PNLQN P    +  KIR AF+A PG+ L+ ADY Q+ELR+
Sbjct: 726  RVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQIELRV 785

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+                       VP+  D  
Sbjct: 786  LAHVADIPQLRQAFADGVDIHAMTASEMFG----------------------VPV--DGM 821

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E  K  +
Sbjct: 822  PSEIRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFA 881

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P I+S   S R   ERA+IN P+QGSAAD+   AM+++      
Sbjct: 882  RENGYVETIFGRRAHYPDIRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEA 941

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             +L  ++LLQVHDE+I E      E    +++  M        ++RV L VDA+ A NW
Sbjct: 942  AKLSARMLLQVHDELIFEVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNW 1000


>gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
 gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
          Length = 968

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 164/309 (53%), Gaps = 28/309 (9%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + +  ++GRVH   ++  T TGRLS+  PNLQN P   ++  +IR+AF+A PG+ L+ AD
Sbjct: 686  AQIDRRDGRVHTDFSMAVTSTGRLSSTEPNLQNIPIRTEEGVRIRRAFVAEPGHVLLAAD 745

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAHLA+  S+ DAF  G D HSRTA +++    + V+               
Sbjct: 746  YSQIELRLLAHLADVPSLRDAFAKGEDIHSRTAADIFGLAPDKVD--------------- 790

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                K+A    RR+AK +NF I YG +  GLA    +   EA+  +D ++++   +L   
Sbjct: 791  ----KEA----RRRAKTINFGIIYGMSAFGLAARLGIGPGEARGIIDAYFSQYPGILEEM 842

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K E+R   +V +  GR      I++  +++R + ERAAIN P QG AA++   AM+ 
Sbjct: 843  ERLKSEAREKGYVLSPFGRKLWIDGIQAKEQARRGNAERAAINAPFQGGAAEIIKRAMVR 902

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            +    R   L  ++LLQVHDE++ E P    +       EC+ +       LRV L  + 
Sbjct: 903  MPAALRAAGLSARMLLQVHDELLFEVPEAEVDA----TAECVRQVMESVATLRVPLKAEI 958

Query: 1114 KCAQNWYSA 1122
                NW  A
Sbjct: 959  GHGANWAVA 967


>gi|404371696|ref|ZP_10977000.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226912178|gb|EEH97379.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 870

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/357 (31%), Positives = 189/357 (52%), Gaps = 34/357 (9%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++N ++    Q+  E    I+   ++  ++S    ++  L+  NV   +G +H S 
Sbjct: 546  KTGYSTNAEVLEKLQDKHEIIPKITYYRQITKLNS---TYVEGLK--NVIDSDGHIHSSF 600

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA-VPGNSLIVADYGQLELRILAHLA 886
            N   T TGRLS+  PNLQN P   +   +IR+ FI    G+ L+  DY Q+ELR+LAH++
Sbjct: 601  NQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFIPDEEGDILLSCDYSQIELRVLAHMS 660

Query: 887  NCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERR 946
            N ++M+DAFK   D H++TA  ++                    K P+   +D  +  R 
Sbjct: 661  NDENMIDAFKHHSDIHTKTASEVF--------------------KVPI---EDVTSLMRS 697

Query: 947  KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006
            +AK +NF I YG +   L++D  ++ +EA + +++++    ++  + ++  +E++ + +V
Sbjct: 698  RAKAVNFGIVYGISDFSLSQDLHITKKEASEYMEIYFERYPKIKGYLDSVMQEAKENGYV 757

Query: 1007 HTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK 1066
             T+L R R  P IKS  R  +   ER A+N P+QGSAAD+   AM+ +    + KEL   
Sbjct: 758  LTILNRRRFIPEIKSSNRIVKALGERLAMNAPIQGSAADIIKLAMVNVYNKLKEKELKST 817

Query: 1067 LLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            ++LQVHDE+IL       E  K IV + M K      +++V L VD    + WY AK
Sbjct: 818  MILQVHDELILNVKENELEEVKQIVKDEMEKVL----DMKVPLEVDTNMGKTWYEAK 870


>gi|284047822|ref|YP_003398161.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
 gi|283952043|gb|ADB46846.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
          Length = 872

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/334 (34%), Positives = 176/334 (52%), Gaps = 30/334 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            I  L     +  L+S ++L L    ++   GR+H   N + T TGRLS+  PNLQN P  
Sbjct: 567  IETLISYRQLSKLLSTYLLGLH-PLINPATGRIHTHFNQMATVTGRLSSTEPNLQNIPTR 625

Query: 851  EKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             +   ++R+ F+   G  L+++ DY Q+ELR++A +A  + +LD+F+ G D H+RTA  +
Sbjct: 626  TEVGKRMREMFVPGEGYDLLMSCDYSQVELRVMASIAQDELLLDSFRHGQDVHARTASEI 685

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +      V   QV            P +       R KAK +NF I YG +  GLAR   
Sbjct: 686  F-----GVPLDQV-----------TPYM-------RSKAKTVNFGIIYGISDFGLARQLG 722

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            V   EA + ++ ++     V  + E  K+++R   +V TL GR R  P I +   ++R+ 
Sbjct: 723  VPRGEAAQYIESYFARYTGVKAYMEREKQKAREMGYVETLFGRRRYLPDINAKNFNRRSF 782

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER AINTP+QG+AAD+   AML++++N +   +  ++LLQVHDE++LE P+   E    
Sbjct: 783  AERTAINTPIQGTAADIIKVAMLKVARNLKEARVKSRVLLQVHDELVLEIPAAEQETVGK 842

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            IV E M        +L V L  D    +NW  AK
Sbjct: 843  IVKETMEHAV----DLAVPLVADVAVGKNWARAK 872


>gi|110636269|ref|YP_676477.1| DNA polymerase I [Chelativorans sp. BNC1]
 gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1]
          Length = 978

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 159/307 (51%), Gaps = 29/307 (9%)

Query: 820  KNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            + GRVH S ++ +T TGRLS+  PNLQN P    +  KIR AFIA PG  LI ADY Q+E
Sbjct: 696  ETGRVHTSYSLASTTTGRLSSSEPNLQNIPVRTPEGRKIRTAFIAAPGYKLISADYSQIE 755

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+A+   +  AF  G D H+ TA  M+         G  +    GE         
Sbjct: 756  LRVLAHVADIPELKKAFAEGMDIHAMTASEMF---------GVPVEGMPGE--------- 797

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR+AK +NF I YG +  GLA    +  +EA   +  ++     +  + E  K 
Sbjct: 798  -----VRRRAKAINFGIIYGISAFGLANQLSIPRDEAGAYIKRYFERFPGIRDYMERTKA 852

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
              R   +V T+ GR   +P I+S   S R   ERA+IN P+QGSAAD+   AM+ +   A
Sbjct: 853  FCREKGYVETIFGRRAHYPEIRSSNPSVRAFNERASINAPIQGSAADIIRRAMMRM--EA 910

Query: 1059 RLKELGW---KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
             L + G    K+LLQVHDE++ E P ++ E A  ++   M        +L V L VDA+ 
Sbjct: 911  ALADSGLVDVKMLLQVHDELVFEAPEDAIERAIPVIRTVMEGAAWPARSLSVPLKVDARA 970

Query: 1116 AQNWYSA 1122
            A NW  A
Sbjct: 971  ADNWEEA 977


>gi|398305966|ref|ZP_10509552.1| DNA polymerase I [Bacillus vallismortis DV1-F-3]
          Length = 880

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 185/347 (53%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCSLN-INTETGRL 837
            + D +  L +   I   I  +  I  LQ + + G        + +VH   N   T+TGRL
Sbjct: 561  SADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRQDSHKVHTRFNQALTQTGRL 620

Query: 838  SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFK 896
            S+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF 
Sbjct: 621  SSTDPNLQNIPIRLEEGRKIRQAFVPSENDWLIFAADYSQIELRVLAHISKDENLIEAFT 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
               D H++TAM+++ H+               ED        +  ++ RR+AK +NF I 
Sbjct: 681  NDMDIHTKTAMDVF-HV--------------AED--------EVTSAMRRQAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+++  ++ +EA   +D +    Q V  + E   ++++   +V TL+ R R  
Sbjct: 718  YGISDYGLSQNLGITRKEAGAFIDRYLESFQGVKAYMEDSVQDAKQKGYVTTLMHRRRYI 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P + S   + R+  ER A+NTP+QGSAAD+   AM++++   + K+L  +LLLQVHDE+I
Sbjct: 778  PELTSRNFNIRSFAERTAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELI 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E P E  E+ + +V E M         L V L VD     +WY AK
Sbjct: 838  FEAPQEEIEILEKLVPEVMEHAL----ALDVPLKVDFSSGPSWYDAK 880


>gi|312867003|ref|ZP_07727214.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
 gi|311097485|gb|EFQ55718.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
          Length = 881

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 181/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I S I  +  I  +Q + V G      ++G++H   +   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRYVQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + ++DAF+
Sbjct: 622  SVDPNLQNIPVRLEQGRL-IRKAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFQ 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                   +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------NIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  ++ ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         K+LLQVHDE++
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALERGAYKTKMLLQVHDEIV 838

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            L+ PS+     K +V E M         L V L  D    + WY AK
Sbjct: 839  LQVPSDELAAIKELVKETMESAI----ELVVPLEADENEGKTWYEAK 881


>gi|296332103|ref|ZP_06874567.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675502|ref|YP_003867174.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150874|gb|EFG91759.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413746|gb|ADM38865.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 880

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 185/347 (53%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCSLN-INTETGRL 837
            + D +  L +   I   I  +  I  LQ + + G        + +VH   N   T+TGRL
Sbjct: 561  SADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTGRL 620

Query: 838  SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFK 896
            S+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF 
Sbjct: 621  SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDQNLIEAFT 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
               D H++TAM+++ H+               ED        +  ++ RR+AK +NF I 
Sbjct: 681  NDMDIHTKTAMDVF-HV--------------AED--------EVTSAMRRQAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+++  ++ +EA   +D +    Q V  + E   ++++   +V TL+ R R  
Sbjct: 718  YGISDYGLSQNLGITRKEAGAFIDQYLESFQGVKAYMEDSVQDAKQKGYVTTLMHRRRYI 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P + S   + R+  ER A+NTP+QGSAAD+   AM++++   + K+L  +LLLQVHDE+I
Sbjct: 778  PELTSRNFNIRSFAERTAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELI 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E P E  E+ + +V E M         L V L VD     +WY AK
Sbjct: 838  FEAPQEEIEILEKLVPEVMEHAL----ALDVPLKVDFASGPSWYDAK 880


>gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
 gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
          Length = 971

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/351 (33%), Positives = 175/351 (49%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     + +  + E   +  L+  +I  LPL    ++ + G++H S N   
Sbjct: 650  YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+   +M
Sbjct: 707  TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNM 766

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AFK G D H+ TA  +Y      +   +V  E                  +R KAK  
Sbjct: 767  IEAFKEGDDIHAATAAKVY-----KISIDKVTRE------------------QRSKAKTA 803

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    ++  + +     +R   ++ T+ G
Sbjct: 804  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARGQGYIETIFG 863

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM+ I +  + + +  K++LQV
Sbjct: 864  RKRYLPDINSRNSVVRGYAERNAINAPIQGSAADIIKVAMVRIYQRFQSESIKSKMILQV 923

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+      E  E  + IV+E M   +     ++V L  D  C  NW  A
Sbjct: 924  HDELNFSVLPEEKEKVQKIVIEEMENAY----RMQVPLRADCGCGSNWLEA 970



 Score = 43.5 bits (101), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 18/132 (13%)

Query: 342 YSNVMVVDN-------VSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
           YSN+  +DN       V   +K   +L N     + + DTE    D     P+   E++ 
Sbjct: 366 YSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDTETTGTD-----PIT-AELVG 419

Query: 395 FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY 454
            S        F      + V       + ++NEF P FE   + KV  N  +D  VL NY
Sbjct: 420 MSFSYAENQAF-----YVPVPADRAEAQKIVNEFRPAFEKEGVLKVGQNIKYDMLVLGNY 474

Query: 455 GLKVSGFHADTM 466
           G +V G   DTM
Sbjct: 475 GTEVRGPLFDTM 486


>gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580]
 gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580]
          Length = 951

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/334 (35%), Positives = 170/334 (50%), Gaps = 43/334 (12%)

Query: 792  ISALCEVCSIDSLISNFI---------------LPLQGSNVSGKNGRVHCS-LNINTETG 835
            IS L E+ +ID L +  +               LPL    ++  NGR+H S +   T TG
Sbjct: 635  ISVLEELAAIDELPAKILDYRASAKLKSGYADALPL----LADANGRIHTSFIQTGTATG 690

Query: 836  RLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAF 895
            RLS+R PNLQN P   ++  KIR+AF A  G  LI ADY Q+EL ILAH +  ++++ AF
Sbjct: 691  RLSSRDPNLQNIPIRGEEGRKIRKAFYAADGCKLISADYAQIELVILAHFSQDENLVKAF 750

Query: 896  KAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSI 955
            + G D H+ TA  ++                       VP+ ++     RR AK++NF +
Sbjct: 751  RQGTDVHAATAALIFN----------------------VPV-ENVVPDMRRIAKVINFGV 787

Query: 956  AYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARR 1015
             YG +   LA   ++S  EA   +  ++     V  + E  K+ +     V TL+GR R 
Sbjct: 788  MYGMSAFRLANQLRISRTEAADFITRYFTTYSGVAAFMETLKESAAEKGFVETLMGRRRY 847

Query: 1016 FPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEV 1075
              AI S  ++QR   ER AINTP+QGSAAD+   AML + +  + + L   LLLQVHDE+
Sbjct: 848  IRAINSRNQTQRAAAERIAINTPIQGSAADIVKTAMLHVDRALKRQHLSAHLLLQVHDEL 907

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDL 1109
            ILE P    +  KA++ + M         LRV +
Sbjct: 908  ILEAPDSEVDSVKALLKQEMEHVVKLAVPLRVSI 941


>gi|306991581|pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair
            In Complex With Fragment Dna Polymerase I From Bacillus
            Stearothermophilus
          Length = 580

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 172/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 305  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 364

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 365  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 401

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 402  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 461

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 462  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 519

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 520  KEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 575

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 576  WYDAK 580


>gi|23099618|ref|NP_693084.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
 gi|22777848|dbj|BAC14119.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
          Length = 880

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 178/336 (52%), Gaps = 30/336 (8%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQP 848
            D I  L     +  L S +I  L    V     R+H   N   T+TGRLS+  PNLQN P
Sbjct: 573  DIIPKLLMYRQLGKLQSTYIEGLLKV-VRKDTSRIHTRYNQALTQTGRLSSIEPNLQNIP 631

Query: 849  ALEKDRYKIRQAFIAVPGN-SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
               ++  KIRQAF+    N  +  ADY Q+ELR+LAH+A  + ++ AFK   D H++TAM
Sbjct: 632  IRLEEGRKIRQAFVPSKDNWIMFAADYSQIELRVLAHIAGDEKLIKAFKEDTDIHTQTAM 691

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
            +++      VE+ +V                   ++ RR+AK +NF I YG +  GL+++
Sbjct: 692  DVF-----HVESDEVT------------------SNMRRQAKAVNFGIVYGISDYGLSQN 728

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ +EAKK ++ ++N    V T+ +   +E++    V T++ R R  P I S   + R
Sbjct: 729  LGITRKEAKKFIERYFNSYPGVKTYMDEIVQEAKHKGFVSTIMKRRRYLPDITSRNFNMR 788

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVA 1087
            +  ER A+NTP+QGSAAD+   AM+++    + + L   +LLQVHDE+ILE P    +  
Sbjct: 789  SFAERTAMNTPIQGSAADIIKKAMIDLDHRLKEENLQANVLLQVHDELILEAPENEIDKL 848

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            K IV + M         L V L VD    ++W+ AK
Sbjct: 849  KEIVPDVMENTV----ELDVPLKVDYSFGKSWFDAK 880


>gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 877

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/311 (37%), Positives = 174/311 (55%), Gaps = 34/311 (10%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY
Sbjct: 597  VRPDTGKVHTMFNQTLTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADY 656

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 657  SQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIF-HVSE------------------- 696

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 697  ---EEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVRRYME 753

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 754  NIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDL 813

Query: 1055 SKNARLKE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
            +  ARLKE  L  +LLLQVHDE+ILE P E  E    +V E M +  +      V L VD
Sbjct: 814  A--ARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQAVSS-----VPLKVD 866

Query: 1113 AKCAQNWYSAK 1123
                  WY AK
Sbjct: 867  YHYGPTWYDAK 877


>gi|171777578|ref|ZP_02919266.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
 gi|171283187|gb|EDT48611.1| DNA-directed DNA polymerase [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
          Length = 884

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 177/335 (52%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ  +   K+G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 579  VSKILEYRQIAKLQSTYIVGLQ--DFILKDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 636

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    + ++++ DY Q+ELR+LAH++N + ++ AF+ G D H+ TAM 
Sbjct: 637  LEQGRL-IRKAFVPETADEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMR 695

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF I YG +  GLA + 
Sbjct: 696  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGIVYGISDYGLANNL 733

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +  + AK+ ++ ++     +  + E   ++++   +V TL  R R  P I +   + R 
Sbjct: 734  GIPRKVAKQYIETYFERYPGIKDYMERVVRDAKDKGYVETLFHRRRELPDINARNFNVRQ 793

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + K         K+LLQVHDE+ILE P +  E  +
Sbjct: 794  FAERTAINSPIQGSAADILKIAMINLDKALVDGRFKTKMLLQVHDEIILEVPKDELEAIE 853

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 854  KLVKETMESAI----ELSVPLVADESAGQTWYEAK 884


>gi|297587691|ref|ZP_06946335.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
 gi|297574380|gb|EFH93100.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
          Length = 875

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 182/349 (52%), Gaps = 34/349 (9%)

Query: 780  ATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINT-ET 834
            +T+QE  EA     + I  +    +I  L + +I  +   ++  ++G++H +      +T
Sbjct: 556  STDQEVLEALSGRHEIIDYILRYRTIAKLKTTYIDGM--VDLIKEDGKIHTTFQQTIAQT 613

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GR+S+  PNLQN P   ++   IR+AF+   G+ L+ ADY Q+ELR+LA LAN + M+DA
Sbjct: 614  GRISSTNPNLQNIPIRTEEGRLIRKAFVPSQGSVLLDADYSQIELRVLADLANDEVMIDA 673

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            FK G D H +TA  ++    + V + Q                       R  AK +NF 
Sbjct: 674  FKNGADIHRKTASEVFKVDFDKVTSLQ-----------------------RSNAKAVNFG 710

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            I YG     L++D  ++ +EAK+ ++ + +  +E+  + E      +   +V T++ R R
Sbjct: 711  IVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKEIKQYMEDIVAIGKEKGYVETIMKRRR 770

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDE 1074
              P +KS   + R+  ER A+NTP+QGSAAD+   AM++       + L  KL+LQVHDE
Sbjct: 771  YIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEENLKAKLILQVHDE 830

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +I++ P +  E     V+E M        +L+VD+ +D   A  WY AK
Sbjct: 831  LIVDCPEDEREK----VLEIMKDVMTHAVDLKVDMKIDVNSADTWYDAK 875


>gi|325970645|ref|YP_004246836.1| DNA polymerase I [Sphaerochaeta globus str. Buddy]
 gi|324025883|gb|ADY12642.1| DNA polymerase I [Sphaerochaeta globus str. Buddy]
          Length = 948

 Score =  184 bits (466), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 169/337 (50%), Gaps = 33/337 (9%)

Query: 786  REACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSL-NINTETGRLSARRP 842
            R+    +  + +  +++ L + +I  LPLQ   ++ K  R+H S     TETGRLS + P
Sbjct: 638  RDDYPEVELILQYRTLNKLKTTYIDKLPLQ---INEKTHRIHPSFAQTGTETGRLSCKDP 694

Query: 843  NLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFH 902
            NLQN P   ++  +IR AF+   G+  + ADY Q+EL +LAH+A+   +  AF AG D H
Sbjct: 695  NLQNIPVRTEEGRRIRSAFVPQAGHVFLSADYSQIELVVLAHMADDPGLKGAFAAGIDVH 754

Query: 903  SRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPV 962
            S TA  ++                   D P    L      +RR AK +NF + YG    
Sbjct: 755  SSTASLIF-------------------DVP----LDQVTPVQRRIAKTINFGVMYGMGTH 791

Query: 963  GLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSL 1022
             LA D K+   EAK+ +D ++     V ++ EA K  S+    V TLLG  R    I S 
Sbjct: 792  SLAMDLKIPHSEAKQFIDQYFERYSSVRSFVEATKTMSQQVGSVSTLLGHVRTITEINSR 851

Query: 1023 TRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSE 1082
            +  +R   ER A+NT +QGSAAD+   AML +    + K+LG +LLLQ+HDE+I E P  
Sbjct: 852  SAVERAKAERIAVNTVIQGSAADIVKLAMLRVDSLLKQKKLGARLLLQIHDELIFEVPEA 911

Query: 1083 SAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
              E  KA+V E +         L V L    +   NW
Sbjct: 912  EIEETKAVVKEALEHAV----KLSVPLRTSIEVGSNW 944


>gi|398797234|ref|ZP_10556557.1| DNA polymerase I [Pantoea sp. GM01]
 gi|398103354|gb|EJL93524.1| DNA polymerase I [Pantoea sp. GM01]
          Length = 930

 Score =  184 bits (466), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 119/325 (36%), Positives = 170/325 (52%), Gaps = 52/325 (16%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + V+G   RVH S +   T TGRLS+  PNLQN P   ++  +IRQAFIA PGN 
Sbjct: 645  LPLMINPVTG---RVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAGPGNI 701

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +LDAF  G D H  TA  ++         G  L +  G
Sbjct: 702  IVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVF---------GVTLSKVSG 752

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 753  E--------------QRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 798

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  + ++    +V TL GR    P I S    +R   ERAAIN P+QG+AAD+  
Sbjct: 799  VLRYMEETRSKAAEKGYVETLDGRRLWLPDITSSNAIRRKAAERAAINAPMQGTAADIIK 858

Query: 1049 CAMLEISKNARLKELGW---------KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPF 1099
             AM+ +         GW         ++++QVHDE++ E  S++ E A   + E M    
Sbjct: 859  RAMIAVD--------GWLLEQKDDAVRMIMQVHDELVFEIRSDAVEGAIKTIRELM---- 906

Query: 1100 NGKNNLRVD--LSVDAKCAQNWYSA 1122
              +N++++D  L V+     NW  A
Sbjct: 907  --ENSMKLDVPLQVEVGTGDNWDEA 929



 Score = 48.9 bits (115), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 153/392 (39%), Gaps = 83/392 (21%)

Query: 300 FKRSNQKNPKNDAAEGT--GQNKKA-SENENSEKLEIL-----RSKLASFYSNVMVVDNV 351
           F R   K    D  +GT   Q KK+ S+ + S+  E++      + + S    V ++D  
Sbjct: 279 FSRYEFKRWIADLQDGTWLQQGKKSNSQTQKSQLSEVVAPVTETTSVLSADGYVTILDEA 338

Query: 352 SAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSC 411
           + A+   W+   K   L  A D E   +D      V     I F++  G  A    G   
Sbjct: 339 TFAE---WLKKLKSAELF-AFDLETDSLDTLSANIVG----IAFAVAPGEAAYLPVGH-- 388

Query: 412 IWVDLLDGGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMH 467
              D LD   +    D+L +  P  ED +  KV  N  +D  VL+NY ++++G   DTM 
Sbjct: 389 ---DYLDAPEQLDRNDVLKQLKPLLEDGNAAKVGQNLKYDRGVLKNYDIELNGIKFDTML 445

Query: 468 MARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR 527
            +            Y L ++ G   +   D  A +    K  T E   GK   +  F + 
Sbjct: 446 ES------------YCLNSVGGKHDM---DSLAARWLNHKTVTFEEIAGKGKNQLTFNQI 490

Query: 528 KLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGK 587
            L++ G                        Y+A D+  TL+L+       L+M  KL+ +
Sbjct: 491 ALEQAG-----------------------HYAAEDADVTLQLH-------LKMWAKLEPE 520

Query: 588 PVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWAS 647
             P +     ++E   P  +++ ++E  G+L+D+  L      A+  QE           
Sbjct: 521 AGPKQ----VFEEIEMPLLKVISRIERNGVLIDQNIL------AKHSQELTTRVAELELK 570

Query: 648 KHCPDAKYMNVGSDTQLRQLLF---GGKPNSK 676
            H    +  N+ S  QL+ +LF   G KP  K
Sbjct: 571 AHELAGEPFNLSSPKQLQTILFEKQGIKPTKK 602


>gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C]
          Length = 968

 Score =  184 bits (466), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/317 (36%), Positives = 165/317 (52%), Gaps = 34/317 (10%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP          GRVH + ++  T TGRLS+  PNLQN P    +  KIR AF+A
Sbjct: 680  LPSYILP--------TTGRVHTNYSLATTLTGRLSSSEPNLQNIPVRTAEGRKIRAAFVA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+A+  ++ +AF  G D H+ TA  M+     AVE     
Sbjct: 732  SKGHLLLSADYSQIELRILAHVADITALKEAFAKGQDIHAMTASQMFG---VAVE----- 783

Query: 924  LEWHGEDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLW 982
                               SE RR+AK +NF I YG +P GLA    +S +EA   + L+
Sbjct: 784  ----------------GMTSEIRRRAKAINFGIIYGISPFGLASQLGISRKEASDYIQLY 827

Query: 983  YNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGS 1042
            +     +  + E  K  +R   +V T+ GR   +P IK+     R+  ERAAIN P+QGS
Sbjct: 828  FERFPGIEDYMERTKIFARHYGYVETIFGRRIHYPEIKTDKPQIRSFNERAAINAPIQGS 887

Query: 1043 AADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGK 1102
            AAD+   AM+++      + L  K+LLQVHDE+I E P   ++    ++ + M       
Sbjct: 888  AADIIRRAMIQMENALEKERLSAKMLLQVHDELIFEVPKSESKKTTILIKKVMENATMPA 947

Query: 1103 NNLRVDLSVDAKCAQNW 1119
             +L V L V    AQNW
Sbjct: 948  LSLSVPLEVKVIAAQNW 964



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 134/334 (40%), Gaps = 85/334 (25%)

Query: 415 DLLDGGGRDL--------LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           D L GGGR +        L    P  E+ ++ K+  N  +D  V++ + + +  F  DTM
Sbjct: 421 DNLLGGGRIVPQIETQKALALLKPILENQAVLKIGQNIKYDWLVMKQHNIVMCSFD-DTM 479

Query: 467 HMARLWDSSRRTEGGYSLEA--LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIF 524
            ++            Y+LEA   T    V+SE    ++               IS KD+ 
Sbjct: 480 LLS------------YALEAGISTHGMDVLSERWLGHKP--------------ISYKDLT 513

Query: 525 GRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKL 584
             R+        KI + A V+  Q         Y+A D+  TL+L++ LK +L+      
Sbjct: 514 HSRR--------KIVSFARVDLKQAT------LYAAEDADITLRLWQVLKPQLV------ 553

Query: 585 DGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRK 644
                  + M   Y+   +P  EIL +ME  G+LVDR+ LS      R   E A      
Sbjct: 554 ------AQKMTKIYERLDRPLIEILARMEERGILVDRQILS------RLSGELAQTVLNL 601

Query: 645 WASKHCPDAKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAE 699
               +    +  N+ S  QL  +LFG     G   +K    S   + +      E + AE
Sbjct: 602 GEEIYQLVGEKFNIASPKQLGDILFGKMGLPGGTKTKSGQWSTSAQTL------EELAAE 655

Query: 700 GKKTPSK---FRNIT-LRSIGVD-LPTEMYTATG 728
           G   P K   +R +T L+S   D LP+ +   TG
Sbjct: 656 GHILPRKIIDWRQLTKLKSTYTDALPSYILPTTG 689


>gi|345100596|pdb|2XY5|A Chain A, Crystal Structure Of An Artificial Salen-Copper Basepair In
            Complex With Fragment Dna Polymerase I From Bacillus
            Stearothermophilus
          Length = 581

 Score =  184 bits (466), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 172/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 306  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 365

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 366  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 402

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 403  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 462

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 463  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 520

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 521  KEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 576

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 577  WYDAK 581


>gi|328545870|ref|YP_004305979.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1]
 gi|326415610|gb|ADZ72673.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1]
          Length = 994

 Score =  183 bits (465), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 115/306 (37%), Positives = 160/306 (52%), Gaps = 24/306 (7%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S +  +  RVH S ++ +T TGRLS+  PNLQN P   ++  KIR+AF+A  G  LI AD
Sbjct: 708  SYIHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTEEGRKIRKAFVADKGRKLISAD 767

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+A+   +  AF  G D H+ TA  M+           V +E  G D   
Sbjct: 768  YSQIELRVLAHMADIPQLKQAFADGLDIHAMTASEMF----------GVPIE--GMD--- 812

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             P++       RR+AK +NF I YG +  GLA    +S  EA   +  ++     +  + 
Sbjct: 813  -PMV-------RRRAKAINFGIIYGISAFGLAAQLGLSRGEAGDYIKTYFERFPGIRDYM 864

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            EA KKE     +V T+ GR   +P + +   S R   ERAAIN P+QGSAAD+   AM+ 
Sbjct: 865  EAIKKEVHTKGYVTTVFGRKAHYPDVNTSNPSLRAFYERAAINAPIQGSAADIIRRAMVR 924

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            +       +L  ++LLQVHDE+I E P +  E    +V   M         L V L VDA
Sbjct: 925  MDAALAAAKLDAEMLLQVHDELIFEVPEDQVEATIPVVRRVMETATEPALTLSVPLQVDA 984

Query: 1114 KCAQNW 1119
            + A NW
Sbjct: 985  RAADNW 990



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 139/356 (39%), Gaps = 99/356 (27%)

Query: 342 YSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGP 401
           Y  V  +D + A     W+       LV A DTE   +D  Q       E++  S+ + P
Sbjct: 384 YETVTSLDRLKA-----WVAEAVETGLV-AFDTETTSLDAMQ------AELVGVSLATAP 431

Query: 402 EADFGNGKSCIWVDLLDGGGR-----------------DLLNEFAPFFEDPSIKKVWHNY 444
                 GK+C +V L    G                  + L+   P  ED  + K+  N 
Sbjct: 432 ------GKAC-YVPLAHVDGEGDLLGGGGLVEGQIPLAEALDVLRPMLEDAGVLKIAQNL 484

Query: 445 SFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKD 504
            +D  V+  YG++++ +  DTM ++ + D+ +   GG  ++ L                 
Sbjct: 485 KYDWLVMARYGVEIAPYD-DTMLLSYVLDAGK---GGNGMDELA---------------- 524

Query: 505 MSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFD 562
                  E ++    I  K++ G       G A       P+++          +Y+A D
Sbjct: 525 -------ERWLDHTPIPFKEVAG------SGKAMVTFDKVPIDKAT--------AYAAED 563

Query: 563 SINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDRE 622
           +  TL+L++ LK +L+             + M   Y+   +P   +L +ME  G+ VDR+
Sbjct: 564 ADVTLRLWRVLKPRLV------------AERMATVYETLERPMVPVLARMERRGISVDRQ 611

Query: 623 YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSK 676
            LS +     A+  AA+      A  H    +  N+GS  QL  +LFG  G P  K
Sbjct: 612 MLSRLSG-DFAQGMAALE-----AEIHALAGESFNIGSPKQLGDILFGKMGLPGGK 661


>gi|310658711|ref|YP_003936432.1| DNA polymerase I [[Clostridium] sticklandii]
 gi|308825489|emb|CBH21527.1| DNA polymerase I [[Clostridium] sticklandii]
          Length = 888

 Score =  183 bits (465), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 120/324 (37%), Positives = 174/324 (53%), Gaps = 43/324 (13%)

Query: 812  LQGSNVSG-------KNGRVHCSLNIN-TETGRLSARRPNLQNQPA-LEKDRYKIRQAFI 862
            LQ + V G       K GR+H S N   T TGR+S+  PN+QN P  LE  R ++R+ F+
Sbjct: 596  LQSTYVDGLLNIINPKTGRIHSSFNQTITTTGRISSTEPNMQNIPVRLEIGR-ELRKVFV 654

Query: 863  AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQV 922
            A     L+ ADY Q+ELRILAH+AN + ++DAF  G D H+ TA  ++            
Sbjct: 655  APEDMYLVDADYSQIELRILAHIANDEGLIDAFSKGDDIHTITASEVFN----------- 703

Query: 923  LLEWHGEDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDL 981
                       VPL  D    E R  AK +NF I YG +  GL+ +  +S + AK+ +D 
Sbjct: 704  -----------VPL--DEVTKELRSAAKAVNFGIVYGISDFGLSNNLGISKQVAKEYIDN 750

Query: 982  WYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQG 1041
            ++     V  + E   ++++ D +V T +GR R  P + S     +N  +R A+NTP+QG
Sbjct: 751  YFARYPYVKKYMEDIVEKAKNDGYVETYIGRRRYIPELGSNNFIMKNLGKRLAMNTPIQG 810

Query: 1042 SAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPF 1099
            SAADV   AM+++   ARLK  G   KL+LQVHDE+I+E P       K+ V + + +  
Sbjct: 811  SAADVIKIAMVKVY--ARLKSEGLKSKLILQVHDELIIESPDSE----KSYVADLLKEEM 864

Query: 1100 NGKNNLRVDLSVDAKCAQNWYSAK 1123
                +L V L+VDAK  ++WY  K
Sbjct: 865  ESAVDLNVKLTVDAKWGKSWYETK 888


>gi|328950652|ref|YP_004367987.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884]
 gi|328450976|gb|AEB11877.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884]
          Length = 834

 Score =  183 bits (465), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/308 (36%), Positives = 164/308 (53%), Gaps = 30/308 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V    GR+H   +   T TGRLS+  PNLQN P   +   +IR+AF+A PG  L+ ADY 
Sbjct: 556  VHPATGRIHTRYHQTGTATGRLSSSDPNLQNIPVRTEVGRRIRRAFVAEPGYVLVAADYS 615

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAHL+  +++   F+   D H++TA  M+                     PP  
Sbjct: 616  QIELRVLAHLSGDENLKRVFQERRDIHTQTASWMF-------------------GVPPEA 656

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            +  D F   RR AK +NF + YG +P  L+R+  +   EA++ +  ++     V  + E 
Sbjct: 657  V--DPF--RRRAAKTVNFGVLYGMSPHRLSRELGIEYAEAERFIQRYFESYPRVQAYIER 712

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +++R   +V TL GR R  P I+S  R+ R   ER A N PVQG+AAD+   AM++++
Sbjct: 713  TLEQAREKGYVETLFGRRRYIPDIRSRNRNVREAAERMAFNMPVQGTAADLMKLAMVKLA 772

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
                ++ LG +L+LQVHDE++LE P E AE    +V E M     G   L V L V+   
Sbjct: 773  PE--IRSLGARLILQVHDELVLEAPQERAEAVARVVREVM----EGAWALDVPLEVEVGI 826

Query: 1116 AQNWYSAK 1123
             +NW  AK
Sbjct: 827  GENWLEAK 834


>gi|421767133|ref|ZP_16203893.1| DNA polymerase I [Lactococcus garvieae DCC43]
 gi|407624368|gb|EKF51129.1| DNA polymerase I [Lactococcus garvieae DCC43]
          Length = 871

 Score =  183 bits (465), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 175/346 (50%), Gaps = 37/346 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D + +L +   + + I  +  +  +Q + V G       +GR+H   +   T+TGRLS
Sbjct: 553  AADILESLAQEYELVAKILEYRQVSKIQSTYVQGLIPQIAADGRIHTRYVQDLTQTGRLS 612

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P  LE  R  IR+AF+A   N L+ +DY Q+ELR+LAH++  + ++DAF  
Sbjct: 613  SVEPNLQNIPVRLEAGRL-IRKAFVAAEDNILLSSDYSQIELRVLAHMSKDEHLIDAFNH 671

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TAM ++                 G DKP     ++   ++RR AK +NF I+Y
Sbjct: 672  GADIHSSTAMRVF-----------------GIDKP-----ENVTPNDRRNAKAVNFGISY 709

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G+T  GLA+   +S +EA   +  ++     V  +    K++++    V T+  R R+ P
Sbjct: 710  GETEYGLAKRLNISNKEAGDMIRAYFERYPGVANYIAETKRDAKDKGFVSTMFNRRRKLP 769

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVIL 1077
             I +     R   ER AIN P+QGSA D+   AM+ +           +LLLQVHDE+IL
Sbjct: 770  EINNRNFMVRQGAERQAINAPIQGSAGDILKIAMINLDSALSEGNFKARLLLQVHDEIIL 829

Query: 1078 EGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            E P E     +A+V + M         L V L  D     +WY AK
Sbjct: 830  EVPKEELAEVQALVKQTMESAV----ELNVPLLADENTGASWYEAK 871


>gi|386317853|ref|YP_006014017.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis ATCC
            12394]
 gi|417752115|ref|ZP_12400347.1| DNA-directed DNA polymerase [Streptococcus dysgalactiae subsp.
            equisimilis SK1249]
 gi|323128140|gb|ADX25437.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis ATCC
            12394]
 gi|333772109|gb|EGL48990.1| DNA-directed DNA polymerase [Streptococcus dysgalactiae subsp.
            equisimilis SK1249]
          Length = 880

 Score =  183 bits (465), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 183/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILTDGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 621  SVDPNLQNIPIRLEQGRL-IRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFN 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK       D  A++RR AK +NF I 
Sbjct: 680  EGADIHTSTAMRVF-----------------GIDKAA-----DVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  +      K+LLQVHDE++
Sbjct: 778  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIV 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P++     K +V + M        +L V L VD    Q+WY AK
Sbjct: 838  LEVPNDELTAIKKLVKDTMEAAV----DLAVPLCVDESTGQSWYEAK 880


>gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873]
 gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873]
          Length = 881

 Score =  183 bits (465), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 122/343 (35%), Positives = 180/343 (52%), Gaps = 31/343 (9%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
            ++ +++   IS + +   I  L S ++  L+  +V  ++G++H S N   T TGRLS+  
Sbjct: 568  EKLKDSHPIISKIIDYRQITKLDSTYVEGLK--HVIDEDGKIHSSFNQTVTTTGRLSSTE 625

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGD 900
            PNLQN P   +   +IR+ F+A    S+I  ADY Q+ELR+LAH+AN + ++DAFK   D
Sbjct: 626  PNLQNIPIKHEMGREIRKVFVANNEESVIFSADYSQIELRVLAHIANDEKLIDAFKHHKD 685

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H+ TA  ++   R  VE                PL+       R  AK +NF I YG  
Sbjct: 686  IHTITASEVF---RVPVE-------------EVTPLM-------RSNAKAVNFGIVYGIG 722

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
               L++D  VS +EAK+ +D +++    V  + +    +S  D  V T++ R R  P I+
Sbjct: 723  AFSLSKDINVSRKEAKEYIDTYFSRYPNVKKYIDDIINKSEQDGFVTTIMNRKRYIPEIQ 782

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGP 1080
            S  R  R+  ER A+NTP+QGSAAD+   AM+ + +    + L   L+LQVHDE+IL   
Sbjct: 783  SRNRIVRSFGERLAMNTPIQGSAADIIKLAMVHVYEELIKRNLKSTLILQVHDELILNVY 842

Query: 1081 SESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +  E  K +VVE M     G  NL V L  D      WY AK
Sbjct: 843  KDELEEVKQMVVEKME----GVMNLLVPLEADVNIGITWYEAK 881


>gi|354580239|ref|ZP_08999144.1| DNA polymerase I [Paenibacillus lactis 154]
 gi|353202670|gb|EHB68119.1| DNA polymerase I [Paenibacillus lactis 154]
          Length = 885

 Score =  183 bits (465), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/351 (32%), Positives = 188/351 (53%), Gaps = 34/351 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL-NINTE 833
            ++T+ E  E      D +  + +  ++  L S ++  L    +SGK G+VH         
Sbjct: 563  YSTDAEVLEKLAPYHDIVRLILQYRTLAKLQSTYVEGLL-KEISGKTGKVHTYYRQTIAA 621

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSML 892
            TGRLS++ PNLQN P   ++  K+R+ F+ + PG S++ ADY Q+ELR+LAH+++ + + 
Sbjct: 622  TGRLSSQYPNLQNIPIRLEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHISDDERLK 681

Query: 893  DAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLN 952
            +AF    D H++TAM+++    + V+                       A+ RR AK +N
Sbjct: 682  EAFLHDMDIHTKTAMDVFGVGVDEVD-----------------------ANMRRSAKAVN 718

Query: 953  FSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGR 1012
            F I YG +  GL+++  ++ +EA   +D ++   Q V  + +   KE++ + +V TLL R
Sbjct: 719  FGIVYGISDYGLSQNLNITRKEAAAFIDQYFEVFQGVRRYMDEIVKEAKQNGYVKTLLER 778

Query: 1013 ARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVH 1072
             R  P I +   + R+  ER A+NTP+QG+AAD+   AM+ +    + ++L  ++LLQVH
Sbjct: 779  RRYLPEINASNFNLRSFAERTAMNTPIQGTAADIIKLAMVHMDAALQERKLKSRMLLQVH 838

Query: 1073 DEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            DE++ E P +  E+ K +V E MS        L V L  +     NWY AK
Sbjct: 839  DELVFEVPEDELEIMKELVPEVMSHAL----ALSVPLKSEVSYGTNWYEAK 885


>gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
 gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
          Length = 920

 Score =  183 bits (465), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/307 (36%), Positives = 155/307 (50%), Gaps = 28/307 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + G +H S N   T TGRLS+  PNLQN P   +D  +IR+ FI   G     ADY 
Sbjct: 640  INPRTGHIHTSFNQTVTATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEDGCLFFSADYS 699

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR++AHL+  K M++AF+ G D H+ TA  +Y                 G+D     
Sbjct: 700  QIELRVMAHLSGDKHMIEAFQHGYDIHAATAAKIY-----------------GKD----- 737

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +KD    ER KAK  NF I YG T  GLA    +   EAK+ +D ++    +V  + E 
Sbjct: 738  -MKDVTRDERTKAKRANFGIIYGITVFGLAERLGIDRNEAKQLIDGYFTTFPQVYDYMEQ 796

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             K  +R   +V T   R R  P I S   + R   ER AIN P+QGSAAD+   AM+ I 
Sbjct: 797  AKATAREQGYVETFFHRRRYLPDINSRNATVRGFAERNAINAPIQGSAADIIKVAMIRIY 856

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
            K  + + +  K++LQVHDE+      E  E  + IV+E M   +     LRV L  D   
Sbjct: 857  KRFKRENIQSKMILQVHDELNFSVLPEEKEQVERIVMEEMQNAY----PLRVPLIADGGW 912

Query: 1116 AQNWYSA 1122
             +NW  A
Sbjct: 913  GKNWLEA 919


>gi|383479362|ref|YP_005388256.1| DNA-directed DNA polymerase I PolA/PolI [Streptococcus pyogenes
            MGAS15252]
 gi|383493287|ref|YP_005410963.1| DNA-directed DNA polymerase I PolA/PolI [Streptococcus pyogenes
            MGAS1882]
 gi|378927352|gb|AFC65558.1| DNA-directed DNA polymerase I PolA/PolI [Streptococcus pyogenes
            MGAS15252]
 gi|378929015|gb|AFC67432.1| DNA-directed DNA polymerase I PolA/PolI [Streptococcus pyogenes
            MGAS1882]
          Length = 880

 Score =  183 bits (465), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 183/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQDFTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 621  SVDPNLQNIPIRLEQGRL-IRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFN 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK       D  A++RR AK +NF I 
Sbjct: 680  EGADIHTSTAMRVF-----------------GIDKAA-----DVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  +      K+LLQVHDE++
Sbjct: 778  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIV 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P++     K +V + M        +L V L VD    Q+WY AK
Sbjct: 838  LEVPNDELTAIKKLVKDTMEAAV----DLAVPLCVDESTGQSWYEAK 880


>gi|359407990|ref|ZP_09200462.1| DNA polymerase I [SAR116 cluster alpha proteobacterium HIMB100]
 gi|356676747|gb|EHI49096.1| DNA polymerase I [SAR116 cluster alpha proteobacterium HIMB100]
          Length = 950

 Score =  183 bits (465), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 162/309 (52%), Gaps = 26/309 (8%)

Query: 816  NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
            +V+ + GRVH S + +   TGRLS+  PNLQN P    +  +IR AF+A PG  LI ADY
Sbjct: 665  SVNPRTGRVHTSFSMVGASTGRLSSSDPNLQNIPIRTAEGRQIRTAFVAKPGCKLISADY 724

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR++AH+A   SM++AFK G D H++TA  ++                       V
Sbjct: 725  SQIELRLVAHVAEETSMIEAFKDGVDIHAQTAAEVFG----------------------V 762

Query: 935  PLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
            P+  +   SE RR+AK +NF I YG +  GLAR   V   EA+  +  +      + ++ 
Sbjct: 763  PI--ETMDSETRRRAKAINFGIIYGISGFGLARQLSVPQGEARDYIKAYLERFPGIKSYM 820

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            +  K+ +R    V TL GR    P I     + R   ER AIN P+QGSAAD+   AM  
Sbjct: 821  DDAKQFARDHQFVETLFGRRIHIPQIAEKAPAMRGFAERQAINAPIQGSAADIIKRAMCR 880

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            +      ++L   +LLQVHDE+I E P   A+ A +++   M +      +L+V L  +A
Sbjct: 881  LPDALAAEQLDAVMLLQVHDELIFEVPDAQADEAVSVITSVMEQAAEPVVSLKVPLIAEA 940

Query: 1114 KCAQNWYSA 1122
              AQ+W  A
Sbjct: 941  GIAQSWSDA 949



 Score = 48.9 bits (115), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 90/236 (38%), Gaps = 53/236 (22%)

Query: 434 DPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKV 493
           D S+ K+ HN  +D H+  + G                        GG+SL A+      
Sbjct: 426 DSSVLKIGHNLKYDAHIFLHEG-----------------------NGGFSLNAV------ 456

Query: 494 MSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERE 553
             +D       +  G TD   +  ++  ++     +K +   GK +   P  E+  ++  
Sbjct: 457 --DDTMCLSYVLDAGRTDRHGLDHLA-SNLLQVSTIKYEEVCGKGAKQIPFAEVDVQQ-- 511

Query: 554 LWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKME 613
              +Y+A D+  TL+L+  LK +L              + M   Y+   +P   IL KME
Sbjct: 512 -ACAYAAEDADITLRLWMMLKPRLAR------------EGMAHVYERLERPLIPILAKME 558

Query: 614 TEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
             G+ VD+  L       R   + AV      A  H    +  NV S  QL ++LF
Sbjct: 559 AAGIAVDQSILK------RLSADFAVRIAELEAEIHNQAGEPFNVASPKQLGEVLF 608


>gi|383763177|ref|YP_005442159.1| DNA polymerase I [Caldilinea aerophila DSM 14535 = NBRC 104270]
 gi|381383445|dbj|BAM00262.1| DNA polymerase I [Caldilinea aerophila DSM 14535 = NBRC 104270]
          Length = 955

 Score =  183 bits (465), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 119/335 (35%), Positives = 182/335 (54%), Gaps = 39/335 (11%)

Query: 792  ISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQP 848
            I  + E   ++ L S ++  LP   + V+ + GRVH S +     TGRLS+  PNLQN P
Sbjct: 647  IELILEHRQLEKLRSTYVDALP---ALVNPQTGRVHTSFSQTGAVTGRLSSSNPNLQNIP 703

Query: 849  ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
               +   +IR+A +A PG  LI ADY Q+ELR+LAH+AN   +++AF+A  D H+ TA  
Sbjct: 704  IRTEIGREIRRAIVAPPGWQLISADYSQVELRVLAHMANEPLLIEAFQADQDIHAVTASK 763

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++     AV   Q                       R   K +NF+  YG +  GL+   
Sbjct: 764  LFGVPVEAVTRDQ-----------------------RSLGKTINFATIYGVSEFGLSSRT 800

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS--LTRSQ 1026
            +++ E+A++ ++ ++     +  + +   +E+R   +V TLLGR R FP +KS  L  +Q
Sbjct: 801  ELTREQARQFLEQYFQTYPRIRAFLDHILEEAREKGYVQTLLGRKRFFPELKSGKLPPNQ 860

Query: 1027 RNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESA 1084
            R  +ERAAIN P+QG+AAD+   AM+ + +  RL+  G+  +LL+QVHDE++LE P E  
Sbjct: 861  RAAVERAAINAPIQGTAADIMKIAMIRLYE--RLQNDGYRTRLLIQVHDELVLEAPPEEL 918

Query: 1085 EVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            E A  +V E M+  +     L V L VD +   NW
Sbjct: 919  ESATHLVRETMANAY----QLTVPLKVDVEIGPNW 949



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 99/240 (41%), Gaps = 56/240 (23%)

Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
           PFF D ++ KV HN  +D  VL  +GL V G   DT+ MA L D + R+ G         
Sbjct: 421 PFFADAALPKVAHNAKYDLIVLRRHGLDVMGVLDDTLLMAWLLDPASRSLG--------- 471

Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR 549
             K ++E +  ++            M ++S     GR+++  D          P+E+   
Sbjct: 472 -LKALAETELGWK------------MTELSELIGSGRKQITIDQ--------VPLEQAA- 509

Query: 550 EERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEIL 609
                  +Y   D   T++LY +L+ +L E   +            + Y+   +P   +L
Sbjct: 510 -------AYCGADVDATIRLYATLEPRLREAGLE------------ELYRTIERPLLPVL 550

Query: 610 VKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
             ME  G+L+D E+L ++        E +   +    S +       N+ S  QL Q+LF
Sbjct: 551 TAMEMAGVLLDVEFLKQMSA------ELSKRLYELEQSLYEVVGHAFNLRSTQQLSQVLF 604


>gi|257898348|ref|ZP_05678001.1| DNA polymerase A [Enterococcus faecium Com15]
 gi|257836260|gb|EEV61334.1| DNA polymerase A [Enterococcus faecium Com15]
          Length = 881

 Score =  183 bits (465), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/348 (35%), Positives = 183/348 (52%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEV 1075
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQVHDE+
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQVHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + E P +  E    +V + M +      +L V L  D+   + WY AK
Sbjct: 838  VFEVPEKELESLDKLVKKVMEQAV----SLHVPLITDSSWGKTWYEAK 881


>gi|345100602|pdb|2XY7|A Chain A, Crystal Structure Of A Salicylic Aldehyde Base In The
            Pre-Insertion Site Of Fragment Dna Polymerase I From
            Bacillus Stearothermophilus
          Length = 580

 Score =  183 bits (465), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 172/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 305  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 364

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 365  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 401

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 402  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 461

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 462  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 519

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 520  KEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 575

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 576  WYDAK 580


>gi|418962821|ref|ZP_13514671.1| DNA-directed DNA polymerase [Streptococcus anginosus subsp. whileyi
            CCUG 39159]
 gi|383345024|gb|EID23169.1| DNA-directed DNA polymerase [Streptococcus anginosus subsp. whileyi
            CCUG 39159]
          Length = 881

 Score =  183 bits (465), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 180/347 (51%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 562  AADVLERLSPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRYLQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + +++AF+
Sbjct: 622  SVDPNLQNIPIRLEQGRL-IRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDEYLIEAFR 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------GIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVETLFHRRRDI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +    +    ++LLQVHDE++
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALTDRNFKTRMLLQVHDEIV 838

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P       K +V + M         L V L  D    + WY AK
Sbjct: 839  LEVPENELTAIKTLVKDIMESAI----ELVVPLKADESAGKTWYEAK 881


>gi|21909681|ref|NP_663949.1| DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28895061|ref|NP_801411.1| DNA polymerase I [Streptococcus pyogenes SSI-1]
 gi|21903864|gb|AAM78752.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28810306|dbj|BAC63244.1| putative putative DNA-directed DNA polymerase I [Streptococcus
            pyogenes SSI-1]
          Length = 880

 Score =  183 bits (465), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 183/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 621  SVDPNLQNIPIRLEQGRL-IRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFN 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK       D  A++RR AK +NF I 
Sbjct: 680  EGADIHTSTAMRVF-----------------GIDKAA-----DVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  +      K+LLQVHDE++
Sbjct: 778  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIV 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P++     K +V + M        +L V L VD    Q+WY AK
Sbjct: 838  LEVPNDELTAIKKLVKDTMEAAV----DLAVPLCVDESTGQSWYEAK 880


>gi|404487040|ref|ZP_11022227.1| DNA polymerase I [Barnesiella intestinihominis YIT 11860]
 gi|404335536|gb|EJZ62005.1| DNA polymerase I [Barnesiella intestinihominis YIT 11860]
          Length = 926

 Score =  183 bits (465), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/324 (35%), Positives = 165/324 (50%), Gaps = 31/324 (9%)

Query: 801  IDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQ 859
            I  L+S +I  L    ++ K G++H S N   T TGRLS+  PNLQN P  + +  +IR+
Sbjct: 631  IRKLLSTYINALP-ELINPKTGKIHTSFNQTITSTGRLSSSNPNLQNIPIRDNEGREIRR 689

Query: 860  AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
            AF+         ADY Q+ELRI+AHL+  + M++AF+ G D H+ TA  +Y         
Sbjct: 690  AFVPDKDCVFFSADYSQIELRIMAHLSGDRHMIEAFREGSDIHAATAAKIY--------- 740

Query: 920  GQVLLEWHGEDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKT 978
                       K P+    DA  ++ RRKAK  NF I YG +  GLA    +   EAK  
Sbjct: 741  -----------KVPI----DAVTADMRRKAKTANFGIIYGISVFGLAERLNIPRSEAKIL 785

Query: 979  VDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTP 1038
            +D ++    ++  +     + +R   +V T+ GR R  P I S     R + ER AIN P
Sbjct: 786  IDGYFESYPQIKEYMNKSIEVAREKGYVETICGRKRMLPDIHSHNSVVRGYAERNAINAP 845

Query: 1039 VQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKP 1098
            +QGSAAD+   AM+ I+K    + L  +++LQVHDE+    P E  E  KAIV E M   
Sbjct: 846  IQGSAADIIKIAMIRIAKRLENEHLRSRMILQVHDELNFNVPVEEIERVKAIVCEEMENA 905

Query: 1099 FNGKNNLRVDLSVDAKCAQNWYSA 1122
            +     L+V L  D+    NW  A
Sbjct: 906  Y----PLQVPLLADSGVGHNWLEA 925


>gi|386759473|ref|YP_006232689.1| hypothetical protein MY9_2900 [Bacillus sp. JS]
 gi|384932755|gb|AFI29433.1| hypothetical protein MY9_2900 [Bacillus sp. JS]
          Length = 880

 Score =  183 bits (465), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 185/347 (53%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCSLN-INTETGRL 837
            + D +  L +   I   I  +  I  LQ + + G        + +VH   N   T+TGRL
Sbjct: 561  SADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTGRL 620

Query: 838  SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFK 896
            S+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF 
Sbjct: 621  SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFT 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
               D H++TAM+++ H+               ED        +  ++ RR+AK +NF I 
Sbjct: 681  NDMDIHTKTAMDVF-HV--------------AED--------EVTSAMRRQAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+++  ++ +EA   +D +    Q V  + E   ++++   +V TL+ R R  
Sbjct: 718  YGISDYGLSQNLGITRKEAGAFIDRYLESFQGVKAYMEDSVQDAKQKGYVTTLMHRRRYI 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P + S   + R+  ER A+NTP+QGSAAD+   AM++++   + K+L  +LLLQVHDE+I
Sbjct: 778  PELTSRNFNIRSFAERTAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELI 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E P E  E+ + +V E M         L V L VD     +WY AK
Sbjct: 838  FEAPQEEIEILEKLVPEVMEHAL----ALDVPLKVDFASGPSWYDAK 880


>gi|1405438|emb|CAA67184.1| DNA-dependent DNA polymerase [Caldicellulosiruptor bescii DSM 6725]
          Length = 850

 Score =  183 bits (465), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/313 (36%), Positives = 166/313 (53%), Gaps = 30/313 (9%)

Query: 812  LQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
            LQ  N S   GRVH + +   T TGRL++  PNLQN P    +   IR+ F+   G+ LI
Sbjct: 567  LQAINPSS--GRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEGGHVLI 624

Query: 871  VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
             ADY Q+ELRILAH++  + ++ AFK   D HS+TA  ++                 G D
Sbjct: 625  DADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVF-----------------GVD 667

Query: 931  KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVL 990
                  + D     R +AK +NF I YG +  GLARD K+S +EA + ++ ++    +V 
Sbjct: 668  ------IADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVK 721

Query: 991  TWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCA 1050
             + +   K +R +  V TL  R R    IKS  R+ R + ER A+N+P+QGS AD+   A
Sbjct: 722  EYLDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYAERIAMNSPIQGSPADIMKLA 781

Query: 1051 MLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLS 1110
            M+++ +  +   L  K++LQVHDE+++E P E  ++ K IV   M         L+V L 
Sbjct: 782  MIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKEIVKREMENAV----RLKVPLV 837

Query: 1111 VDAKCAQNWYSAK 1123
            V+ K   NWY  K
Sbjct: 838  VEVKEGLNWYETK 850


>gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus marinus MC-1]
 gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus marinus MC-1]
          Length = 911

 Score =  183 bits (465), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 154/303 (50%), Gaps = 28/303 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GRVH S N   T TGRLS+  PNLQN P   ++   IR AFIA  G SL+ ADY Q+EL
Sbjct: 635  TGRVHTSYNQAVTLTGRLSSSDPNLQNIPIRTEEGRAIRTAFIAPAGWSLLAADYSQIEL 694

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAH+ N   + +AF AG D H+ TA  ++         G  L +  GE          
Sbjct: 695  RVLAHMGNVSRLKEAFHAGLDIHAATAAELF---------GVPLAQVTGE---------- 735

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RR AK +NF + YG +P GLA+   +   EA+  +DL++     V    +A  ++
Sbjct: 736  ----HRRMAKTINFGLVYGMSPFGLAKRLGIQNNEARAYMDLYFARYDGVRQHMDATIRD 791

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +R    V TL GR      I +  RS R   ER AIN P+QGSA+D+   AM+ +    +
Sbjct: 792  ARAHGFVETLGGRRCPIRDINATQRSLREFAERTAINAPLQGSASDLIKLAMIRLHGALQ 851

Query: 1060 LKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
                  +++LQVHDE++LE P +     K +V  CM     G   L + L VD    QNW
Sbjct: 852  AGGFKARMVLQVHDELVLEVPDKELAAVKEVVRSCM----EGVMTLSIPLVVDMGVGQNW 907

Query: 1120 YSA 1122
              A
Sbjct: 908  GEA 910


>gi|343526348|ref|ZP_08763298.1| DNA-directed DNA polymerase [Streptococcus constellatus subsp.
            pharyngis SK1060 = CCUG 46377]
 gi|343394299|gb|EGV06847.1| DNA-directed DNA polymerase [Streptococcus constellatus subsp.
            pharyngis SK1060 = CCUG 46377]
          Length = 881

 Score =  183 bits (465), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 180/347 (51%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRYLQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + +++AF+
Sbjct: 622  SVDPNLQNIPIRLEQGRL-IRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDEHLIEAFR 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------GIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVETLFHRRRDI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +    +    ++LLQVHDE++
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALTDRNFKTRMLLQVHDEIV 838

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P       K +V + M         L V L  D    + WY AK
Sbjct: 839  LEVPENELTAIKTLVKDIMESAI----ELVVPLKADESAGKTWYEAK 881


>gi|353251820|pdb|3TAN|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
            Fragment Bound To Duplex Dna With Cytosine-Adenine
            Mismatch At (N-1) Position
 gi|353251823|pdb|3TAP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
            Fragment Bound To Duplex Dna With Cytosine-Adenine
            Mismatch At (N-3) Position
 gi|353251826|pdb|3TAQ|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
            Fragment Bound To Duplex Dna With Cytosine-Adenine
            Mismatch At (N-4) Position
 gi|353251829|pdb|3TAR|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
            Fragment Bound To Duplex Dna With Cytosine-Adenine
            Mismatch At (N-6) Position
 gi|390136455|pdb|4DQS|A Chain A, Binary Complex Of Bacillus Dna Polymerase I Large Fragment
            And Duplex Dna With Rc In Primer Terminus Paired With Dg
            Of Template
          Length = 592

 Score =  183 bits (465), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 171/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 317  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 376

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 377  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 413

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 414  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 473

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 474  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 531

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L   LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 532  KEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 587

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 588  WYDAK 592


>gi|390136431|pdb|4DQI|A Chain A, Ternary Complex Of Bacillus Dna Polymerase I Large Fragment,
            Dna Duplex, And Dctp (Paired With Dg Of Template)
 gi|390136432|pdb|4DQI|D Chain D, Ternary Complex Of Bacillus Dna Polymerase I Large Fragment,
            Dna Duplex, And Dctp (Paired With Dg Of Template)
 gi|390136437|pdb|4DQP|A Chain A, Ternary Complex Of Bacillus Dna Polymerase I Large Fragment,
            Dna Duplex, And Ddctp (Paired With Dg Of Template)
 gi|390136438|pdb|4DQP|D Chain D, Ternary Complex Of Bacillus Dna Polymerase I Large Fragment,
            Dna Duplex, And Ddctp (Paired With Dg Of Template)
 gi|390136458|pdb|4DS4|A Chain A, Ternary Complex Of Bacillus Dna Polymerase I Large Fragment,
            Dna Duplex, And Rctp In Presence Of Mn2+
 gi|390136459|pdb|4DS4|D Chain D, Ternary Complex Of Bacillus Dna Polymerase I Large Fragment,
            Dna Duplex, And Rctp In Presence Of Mn2+
 gi|390136464|pdb|4DS5|A Chain A, Ternary Complex Of Bacillus Dna Polymerase I Large Fragment,
            Dna Duplex, And Rctp In Presence Of Mg2+
 gi|390136465|pdb|4DS5|D Chain D, Ternary Complex Of Bacillus Dna Polymerase I Large Fragment,
            Dna Duplex, And Rctp In Presence Of Mg2+
          Length = 592

 Score =  183 bits (465), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 171/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 317  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 376

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 377  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 413

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 414  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 473

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 474  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 531

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L   LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 532  KEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 587

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 588  WYDAK 592


>gi|422880437|ref|ZP_16926900.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1059]
 gi|422929866|ref|ZP_16962806.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 29667]
 gi|422930550|ref|ZP_16963481.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK340]
 gi|332364041|gb|EGJ41819.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1059]
 gi|339613698|gb|EGQ18429.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 29667]
 gi|339621335|gb|EGQ25898.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK340]
          Length = 880

 Score =  183 bits (464), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 180/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  +  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  ++E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIETYFERFPGIKNYKETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQVHDE++LE P++     +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFNSRMLLQVHDEIVLEVPNDELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  QLVKETMEAAI----ELAVPLVADENAGQTWYEAK 880


>gi|139473034|ref|YP_001127749.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
 gi|134271280|emb|CAM29496.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
          Length = 880

 Score =  183 bits (464), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 183/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 621  SVDPNLQNIPIRLEQGRL-IRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFN 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK       D  A++RR AK +NF I 
Sbjct: 680  EGADIHTSTAMRVF-----------------GIDKAA-----DVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  +      K+LLQVHDE++
Sbjct: 778  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIV 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P++     K +V + M        +L V L VD    Q+WY AK
Sbjct: 838  LEVPNDELTAIKKLVKDTMEAAV----DLAVPLCVDESTGQSWYEAK 880


>gi|19745349|ref|NP_606485.1| DNA polymerase I [Streptococcus pyogenes MGAS8232]
 gi|19747453|gb|AAL96984.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS8232]
          Length = 880

 Score =  183 bits (464), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 183/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     +++++ +DY Q+ELR+LAH++  + ++ AF 
Sbjct: 621  SVDPNLQNIPIRLEQGRL-IRKAFTPSHEDAVLLGSDYSQIELRVLAHISGDEHLIAAFN 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK       D  A++RR AK +NF I 
Sbjct: 680  EGADIHTSTAMRVF-----------------GIDKAA-----DVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  +      K+LLQVHDE++
Sbjct: 778  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIV 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P++     K +V + M        +L V L VD    Q+WY AK
Sbjct: 838  LEVPNDELTAIKKLVKDTMEAAV----DLAVPLCVDESTGQSWYEAK 880


>gi|94543178|gb|ABF33226.1| DNA polymerase I [Streptococcus pyogenes MGAS10270]
          Length = 880

 Score =  183 bits (464), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 183/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 621  SVDPNLQNIPIRLEQGRL-IRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFN 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK       D  A++RR AK +NF I 
Sbjct: 680  EGADIHTSTAMRVF-----------------GIDKAA-----DVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  +      K+LLQVHDE++
Sbjct: 778  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIV 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P++     K +V + M        +L V L VD    Q+WY AK
Sbjct: 838  LEVPNDELTAIKKLVKDTMEAAV----DLAVPLCVDESTGQSWYEAK 880


>gi|313899467|ref|ZP_07832977.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
 gi|312955755|gb|EFR37413.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
          Length = 861

 Score =  183 bits (464), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 28/305 (9%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            K+G++H   N I T+TGRLS+  PNLQN    +++  +IR+AF+A  G+ L+ ADY Q+E
Sbjct: 584  KDGKIHTIFNQIQTQTGRLSSSEPNLQNISVRDEEGKEIRKAFVASEGHVLLSADYSQIE 643

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+AN + M+DAF  G D H++TAM ++    +AV+                    
Sbjct: 644  LRMLAHMANEEVMIDAFNHGIDIHTKTAMQIFDVEHDAVD-------------------- 683

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               A+ RR AK +NF I YG++  GL+    ++ +EA   +D ++     +  + +    
Sbjct: 684  ---ANMRRSAKTVNFGIVYGQSDFGLSEQLGITRKEAHAFIDKYFASYPNIKNFMDTTIA 740

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
                  +V TL  R R    I       R   +RAA+N P+QGSAAD+   AM+ I K  
Sbjct: 741  FCEEHGYVKTLFNRRRYIKEISDKNYMMREFGKRAAMNAPIQGSAADLIKLAMIHIYKKM 800

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            + +++  +++LQ+HDE+I +   E  E  K IV E M         LRV L  +A   + 
Sbjct: 801  QEEQVKSRMILQIHDELIFDVWEEELEQMKTIVEEGMQHAM----KLRVPLIAEANIGRT 856

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 857  WYDAK 861


>gi|344996097|ref|YP_004798440.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A]
 gi|343964316|gb|AEM73463.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A]
          Length = 850

 Score =  183 bits (464), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 168/313 (53%), Gaps = 30/313 (9%)

Query: 812  LQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
            LQ  N S  +GRVH + +   T TGRL++  PNLQN P    +   IR+ F+   G+ LI
Sbjct: 567  LQAINPS--SGRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEEGHVLI 624

Query: 871  VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
             ADY Q+ELRILAH++  + ++ AFK   D HS+TA  ++      V+   V  E     
Sbjct: 625  DADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVF-----GVDIANVTPEM---- 675

Query: 931  KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVL 990
                          R +AK +NF I YG +  GLARD K+S +EA + ++ ++    +V 
Sbjct: 676  --------------RSQAKAVNFGIVYGISDYGLARDVKISRKEAAEFINKYFERYPKVK 721

Query: 991  TWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCA 1050
             + +   K +R +  V TL  R R    IKS  R+ R + ER A+N+P+QGSAAD+   A
Sbjct: 722  EYLDNTVKFARDNGFVLTLFNRKRYVKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLA 781

Query: 1051 MLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLS 1110
            M+++ +  +   L  K++LQVHDE+++E P E  ++ K IV   M         L+V L 
Sbjct: 782  MIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKRIVKREMENAV----ALKVPLV 837

Query: 1111 VDAKCAQNWYSAK 1123
            V+ K   NWY  K
Sbjct: 838  VEVKEGLNWYETK 850


>gi|306828146|ref|ZP_07461409.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
 gi|304429683|gb|EFM32729.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
          Length = 880

 Score =  183 bits (464), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 183/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 621  SVDPNLQNIPIRLEQGRL-IRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFN 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK       D  A++RR AK +NF I 
Sbjct: 680  EGADIHTSTAMRVF-----------------GIDKAA-----DVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  +      K+LLQVHDE++
Sbjct: 778  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIV 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P++     K +V + M        +L V L VD    Q+WY AK
Sbjct: 838  LEVPNDELTAIKKLVKDTMEAAV----DLAVPLCVDESTGQSWYEAK 880


>gi|188581651|ref|YP_001925096.1| DNA polymerase I [Methylobacterium populi BJ001]
 gi|179345149|gb|ACB80561.1| DNA polymerase I [Methylobacterium populi BJ001]
          Length = 1047

 Score =  183 bits (464), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/323 (34%), Positives = 166/323 (51%), Gaps = 25/323 (7%)

Query: 801  IDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQ 859
            +  L S +   LQ     G N RVH S  +  T TGRLS+  PNLQN P   ++  +IR+
Sbjct: 748  LSKLKSTYTDSLQEHADRGTN-RVHTSFALAATTTGRLSSSDPNLQNIPIRTEEGRRIRR 806

Query: 860  AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
            AF+A  G  LI ADY Q+ELR+LAH+A+   + +AF+ G D H+ TA  M+         
Sbjct: 807  AFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMF--------- 857

Query: 920  GQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTV 979
            G  L +  G+               RR+AK +NF I YG +  GLA    +  EEA   +
Sbjct: 858  GVPLDQMTGD--------------LRRRAKTINFGIIYGISAFGLADRLGIGREEASAFI 903

Query: 980  DLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPV 1039
              ++     +  + +  K+  R   +V TL GR   +P I+S   S+R  +ER AIN P+
Sbjct: 904  KQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPI 963

Query: 1040 QGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPF 1099
            QG+AAD+   AM  +      ++L  ++LLQVHDE++ E P +  E    ++   M +  
Sbjct: 964  QGTAADIIRRAMTRMEDALGAEKLAARMLLQVHDELVFEVPDDEVEATIPVIAHVMEEAP 1023

Query: 1100 NGKNNLRVDLSVDAKCAQNWYSA 1122
                +L V L V+A+ A NW  A
Sbjct: 1024 APALSLSVPLVVEARAAGNWEEA 1046


>gi|373121807|ref|ZP_09535674.1| DNA polymerase I [Erysipelotrichaceae bacterium 21_3]
 gi|422330008|ref|ZP_16411032.1| DNA polymerase I [Erysipelotrichaceae bacterium 6_1_45]
 gi|371655099|gb|EHO20455.1| DNA polymerase I [Erysipelotrichaceae bacterium 6_1_45]
 gi|371664786|gb|EHO29955.1| DNA polymerase I [Erysipelotrichaceae bacterium 21_3]
          Length = 861

 Score =  183 bits (464), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 105/305 (34%), Positives = 164/305 (53%), Gaps = 28/305 (9%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            K+G++H   N I T+TGRLS+  PNLQN    +++  +IR+AF+A  G+ L+ ADY Q+E
Sbjct: 584  KDGKIHTIFNQIQTQTGRLSSSEPNLQNISVRDEEGKEIRKAFVASEGHVLLSADYSQIE 643

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+AN + M+DAF  G D H++TAM ++    +AV+                    
Sbjct: 644  LRMLAHMANEEVMIDAFNHGIDIHTKTAMQIFDVEHDAVD-------------------- 683

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               A+ RR AK +NF I YG++  GL+    ++ +EA   +D ++     + ++ +    
Sbjct: 684  ---ANMRRSAKTVNFGIVYGQSDFGLSEQLGITRKEAHAFIDKYFASYPNIKSFMDTTIA 740

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
                  +V TL  R R    I       R   +RAA+N P+QGSAAD+   AM+ I K  
Sbjct: 741  FCEEHGYVKTLFNRRRYIKEISDKNYMMREFGKRAAMNAPIQGSAADLIKLAMIHIYKKM 800

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            + +++  +++LQ+HDE+I +   E  E  ++IV E M         LRV L  +A   + 
Sbjct: 801  QEEQVKSRMILQIHDELIFDVWEEELEQMRSIVEEGMQHAM----KLRVPLIAEANIGRT 856

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 857  WYDAK 861


>gi|335031187|ref|ZP_08524639.1| DNA-directed DNA polymerase [Streptococcus anginosus SK52 = DSM
            20563]
 gi|333770241|gb|EGL47290.1| DNA-directed DNA polymerase [Streptococcus anginosus SK52 = DSM
            20563]
          Length = 881

 Score =  183 bits (464), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 179/347 (51%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRYLQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + +++AF+
Sbjct: 622  SVDPNLQNIPIRLEQGRL-IRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDEHLIEAFR 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------GIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLANNLGISRKEAKSYIDTYFERYPGIKAYMENVVREARDKGYVETLFHRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         ++LLQVHDE++
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALTDGNFKTRMLLQVHDEIV 838

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P       K +V + M         L V L  D    + WY AK
Sbjct: 839  LEVPENELTAIKTLVKDIMESAI----ELSVPLKADESAGKTWYEAK 881


>gi|334341036|ref|YP_004546016.1| DNA polymerase I [Desulfotomaculum ruminis DSM 2154]
 gi|334092390|gb|AEG60730.1| DNA polymerase I [Desulfotomaculum ruminis DSM 2154]
          Length = 878

 Score =  183 bits (464), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 131/398 (32%), Positives = 200/398 (50%), Gaps = 42/398 (10%)

Query: 735  DALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKI-FATEQEAREAC---- 789
            +AL TL  +++ E   ++    L   G     + K  V    K  ++T+ E  E      
Sbjct: 512  EALATLIHHLAGEEFNINSTRQL---GQILFDKLKLPVYKKTKTGYSTDAEVLEKLAEEH 568

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQP 848
            + +S L E   +  L S +   L  + V  +  R+H + +   T TGRLS+  PNLQN P
Sbjct: 569  EIVSVLLEYRQLTKLKSTYADGL-AALVDPQTKRLHSTFHQTVTATGRLSSAEPNLQNIP 627

Query: 849  ALEKDRYKIRQAFIAVP---GNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
               +   +IR+ F  VP   GN ++ ADY Q+ELRILAH++   S LDAF+ G D H+RT
Sbjct: 628  IRLESGRRIRKVF--VPRQRGNLILTADYSQIELRILAHVSQDASFLDAFRQGQDIHTRT 685

Query: 906  AMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            A  ++      V   +V  +  G                  +AK +NF I YG +  GLA
Sbjct: 686  ASEVF-----GVSMDEVTPQLRG------------------RAKAVNFGIVYGISDFGLA 722

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
            RD +VS +EAK  +D ++     +  +     +E++   +V TLL R R  P + S   +
Sbjct: 723  RDLRVSRKEAKSYIDSYFARCPGIQNYIHRVIQEAKEQGYVTTLLNRRRYLPELFSSNYN 782

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAE 1085
             R+  ERAA+NTP+QG+AAD+   AM+ + +  R ++L  K++LQVHDE+I + P +  E
Sbjct: 783  IRSFGERAAMNTPIQGTAADIIKMAMVRVHQELREQDLKAKMVLQVHDELIFDVPEQEVE 842

Query: 1086 VAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
               A+V + M         + V L VD K   NWY  +
Sbjct: 843  KLAALVRQYMESAL----QMDVPLVVDIKIGPNWYDKR 876


>gi|312793618|ref|YP_004026541.1| DNA polymerase i [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180758|gb|ADQ40928.1| DNA polymerase I [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 850

 Score =  183 bits (464), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 168/313 (53%), Gaps = 30/313 (9%)

Query: 812  LQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
            LQ  N S  +GRVH + +   T TGRL++  PNLQN P    +   IR+ F+   G+ LI
Sbjct: 567  LQAINPS--SGRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEEGHVLI 624

Query: 871  VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
             ADY Q+ELRILAH++  + ++ AFK   D HS+TA  ++      V+   V  E     
Sbjct: 625  DADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVF-----GVDIANVTPEM---- 675

Query: 931  KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVL 990
                          R +AK +NF I YG +  GLARD K+S +EA + ++ ++    +V 
Sbjct: 676  --------------RSQAKAVNFGIVYGISDYGLARDVKISRKEAAEFINKYFERYPKVK 721

Query: 991  TWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCA 1050
             + +   K +R +  V TL  R R    IKS  R+ R + ER A+N+P+QGSAAD+   A
Sbjct: 722  EYLDNTVKFARDNGFVLTLFNRKRYVKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLA 781

Query: 1051 MLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLS 1110
            M+++ +  +   L  K++LQVHDE+++E P E  ++ K IV   M         L+V L 
Sbjct: 782  MIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKRIVKREMENAV----ALKVPLV 837

Query: 1111 VDAKCAQNWYSAK 1123
            V+ K   NWY  K
Sbjct: 838  VEVKEGLNWYETK 850


>gi|71902823|ref|YP_279626.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
 gi|71801918|gb|AAX71271.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
          Length = 880

 Score =  183 bits (464), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 183/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 621  SVDPNLQNIPIRLEQGRL-IRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFN 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK       D  A++RR AK +NF I 
Sbjct: 680  EGADIHTSTAMRVF-----------------GIDKAA-----DVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  +      K+LLQVHDE++
Sbjct: 778  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIV 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P++     K +V + M        +L V L VD    Q+WY AK
Sbjct: 838  LEVPNDELTAIKKLVKDTMEAAV----DLAVPLCVDESTGQSWYEAK 880


>gi|390935243|ref|YP_006392748.1| DNA polymerase I [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
 gi|389570744|gb|AFK87149.1| DNA polymerase I [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
          Length = 867

 Score =  183 bits (464), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/310 (34%), Positives = 173/310 (55%), Gaps = 31/310 (10%)

Query: 817  VSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADY 874
            +  +N RVH +       TGR+S+  PNLQN P  E+   +IR+AF++   + LI+ ADY
Sbjct: 586  IMDENNRVHSTFKQTVAATGRISSTEPNLQNIPVREEFGRRIRKAFVSSYEDGLIISADY 645

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAHL+  + ++++F    D H RTA  ++                        
Sbjct: 646  SQIELRVLAHLSEDEKLIESFLNNEDIHLRTASEVFK----------------------- 682

Query: 935  PLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             + K+   SE RR+AK +NF I YG +  GL++D K+S +EAK+ +D +++  + V  + 
Sbjct: 683  -VSKEEVTSEMRRRAKAVNFGIVYGISDYGLSKDLKISRKEAKEYIDNYFDRYKGVKNYI 741

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            ++  K ++ + +V T+L R R  P I S   +QR+  ER A+NTP+QGSAAD+   +M++
Sbjct: 742  DSIVKFAKENGYVTTILNRRRYIPEINSKNFNQRSFGERMAMNTPIQGSAADIIKMSMVK 801

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            +    + + L  +L+LQVHDE+I++   +  E+ K ++   M         LRV L VD 
Sbjct: 802  VYNELKERGLKSRLILQVHDELIIDTHPDEVEIVKGLLKSIMENVI----KLRVPLVVDI 857

Query: 1114 KCAQNWYSAK 1123
               +NWY AK
Sbjct: 858  GQGKNWYDAK 867


>gi|386362030|ref|YP_006071361.1| DNA polymerase I family protein [Streptococcus pyogenes Alab49]
 gi|350276439|gb|AEQ23807.1| DNA polymerase I family protein [Streptococcus pyogenes Alab49]
          Length = 880

 Score =  183 bits (464), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 183/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 621  SVDPNLQNIPIRLEQGRL-IRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFN 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK       D  A++RR AK +NF I 
Sbjct: 680  EGADIHTSTAMRVF-----------------GIDKAA-----DVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  +      K+LLQVHDE++
Sbjct: 778  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIV 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P++     K +V + M        +L V L VD    Q+WY AK
Sbjct: 838  LEVPNDELTAIKKLVKDTMEAAV----DLAVPLCVDESTGQSWYEAK 880


>gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
 gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
          Length = 874

 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 166/306 (54%), Gaps = 28/306 (9%)

Query: 819  GKNGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQL 877
             ++GR+H +      ETGRLS++ PNLQN P   ++  +IR+AF+A PG  L+ ADY Q+
Sbjct: 588  ARDGRIHTTFAQTVAETGRLSSKDPNLQNIPIRIEEGRRIRKAFVARPGCVLLSADYSQI 647

Query: 878  ELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLL 937
            ELR++AH +   ++ +AF    D H+RTA  ++      V   QV  E            
Sbjct: 648  ELRVVAHFSGDPALREAFLHDQDIHTRTAAEVF-----GVPMDQVTPEM----------- 691

Query: 938  KDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARK 997
                   RR+AK +NF + YG+T  GLAR   +S  EA+  ++ ++ +   V  + E +K
Sbjct: 692  -------RRQAKAVNFGLIYGQTDFGLARSVGISRAEARAFIETYFAKFAGVRRYMEEKK 744

Query: 998  KESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKN 1057
             E+R   +V TL GR R  P I     + R + ER AINTP+QG+AAD+   AM+ + + 
Sbjct: 745  AEAREKGYVTTLDGRRRPLPEINHRVFTIRQNAERMAINTPIQGTAADLMKRAMIAVRRA 804

Query: 1058 ARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQ 1117
             R + L  +++LQVHDE++ E P    EV +  +   + +   G   L V L V+ K   
Sbjct: 805  MREEGLSARMILQVHDELVFECP--VGEVDR--LARLVRREMEGAMKLDVPLKVEVKVGP 860

Query: 1118 NWYSAK 1123
            +WYS +
Sbjct: 861  DWYSVQ 866


>gi|333978063|ref|YP_004516008.1| DNA polymerase I [Desulfotomaculum kuznetsovii DSM 6115]
 gi|333821544|gb|AEG14207.1| DNA polymerase I [Desulfotomaculum kuznetsovii DSM 6115]
          Length = 880

 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 115/310 (37%), Positives = 169/310 (54%), Gaps = 31/310 (10%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAV-PGNSLIVADY 874
            ++ + GR+H + +   T TGRLS+  PNLQN P   ++  KIR+ FI    GN ++ ADY
Sbjct: 597  INPETGRLHTTFHQTVTATGRLSSSDPNLQNIPIRMEEGRKIRRVFIPRREGNLILTADY 656

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELRILAH+A   ++L+AF+ G D H+RTA  ++         G  + E         
Sbjct: 657  SQIELRILAHMAGDPNLLEAFRQGQDIHTRTAAEVF---------GVAITE--------- 698

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                   A  R +AK +NF I YG +  GLARD  VS +EA++ ++ ++     V  + E
Sbjct: 699  -----VTADMRGRAKAVNFGIVYGISDFGLARDINVSRQEARQYIENYFARYAGVKAFIE 753

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +++R   +V TLL R R  P + S  R+ R   ER AINTP+QGSAAD+   AM+ I
Sbjct: 754  RTIQQAREKGYVTTLLNRRRYLPDLFSANRNVRMFGERTAINTPIQGSAADIIKLAMVRI 813

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPS-ESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
             +  + + L  +++LQVHDE+I + P+ E  EV+     E + +       L V L VD 
Sbjct: 814  HRELKDRGLATRMILQVHDELIFDMPAGELPEVS-----ELVRRHMENALVLDVPLVVDM 868

Query: 1114 KCAQNWYSAK 1123
            K   NWY  K
Sbjct: 869  KLGPNWYEVK 878


>gi|312863577|ref|ZP_07723815.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322516028|ref|ZP_08068965.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC 49124]
 gi|311101113|gb|EFQ59318.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322125443|gb|EFX96789.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC 49124]
          Length = 879

 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 185/337 (54%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H     + T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQVHDE++LE P++    
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQVHDEIVLEVPNDELVA 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +A+V E M         L V L  D      WY AK
Sbjct: 847  MEALVKETMEAAV----ELAVPLIADENDGCTWYEAK 879


>gi|407796040|ref|ZP_11142996.1| DNA polymerase I [Salimicrobium sp. MJ3]
 gi|407019394|gb|EKE32110.1| DNA polymerase I [Salimicrobium sp. MJ3]
          Length = 876

 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 181/347 (52%), Gaps = 41/347 (11%)

Query: 791  AISALCEVCSIDSLISNFIL-----PLQGSNVSG-------KNGRVHCSLN-INTETGRL 837
            A   L ++ S   +I   +L      LQ + + G       + G+VH   N   T+TGRL
Sbjct: 557  AADVLEQLSSQHEIIDEILLYRQLGKLQSTYIEGLLKVVHKETGKVHTRFNQALTQTGRL 616

Query: 838  SARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFK 896
            S+  PNLQN P   ++  KIRQAFI +  G  +  +DY Q+ELR+LAH++  + ++ +FK
Sbjct: 617  SSADPNLQNIPIRLEEGRKIRQAFIPSRQGWVMFASDYSQIELRVLAHMSGDEKLIQSFK 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H++TA  ++      V++                         RRKAK +NF I 
Sbjct: 677  EGEDVHTKTASEVFGVAPEEVDSDM-----------------------RRKAKAVNFGIV 713

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL++   VS ++A+  +D ++    +V  + E   +++R + +V TL+ R R  
Sbjct: 714  YGISDYGLSQSLGVSRKDAQIYIDAYFKSYPKVKEYMEDTVRQAREEGYVETLMNRRRYL 773

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P + S   ++RN  ER A+NTP+QG+AAD+   AM++++   + +EL   +L+QVHDE+I
Sbjct: 774  PDMNSRNFNRRNAAERTAMNTPIQGTAADIIKKAMIDMAARLKEEELEATMLMQVHDELI 833

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P +  E     V E M     G   L V L VD    + W+ AK
Sbjct: 834  LEVPEQEVEKVTEAVREVME----GTVELTVPLEVDHSYGKTWFDAK 876


>gi|398311771|ref|ZP_10515245.1| DNA polymerase I [Bacillus mojavensis RO-H-1]
          Length = 880

 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 184/337 (54%), Gaps = 32/337 (9%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNG-RVHCSLN-INTETGRLSARRPNLQNQ 847
            D +  + +   I  L S +I  L    V+ K+  +VH   N   T+TGRLS+  PNLQN 
Sbjct: 573  DIVDYILQYRQIGKLQSTYIEGLL--KVTKKDTHKVHTRFNQALTQTGRLSSTDPNLQNI 630

Query: 848  PALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
            P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF    D H++TA
Sbjct: 631  PIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTA 690

Query: 907  MNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLAR 966
            M+++ H+               ED        +  ++ RR+AK +NF I YG +  GL++
Sbjct: 691  MDVF-HV--------------AED--------EVTSAMRRQAKAVNFGIVYGISDYGLSQ 727

Query: 967  DWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQ 1026
            +  ++ +EA   +D +    + V  + E   ++++   +V TLL R R  P + S   + 
Sbjct: 728  NLGITRKEAGAFIDRYLESFKGVKAYMEDSVQDAKQKGYVTTLLHRRRYIPELTSRNFNI 787

Query: 1027 RNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEV 1086
            R+  ER A+NTP+QGSAAD+   AM++++   + K+L  +LLLQVHDE+I E P E  E+
Sbjct: 788  RSFAERTAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEI 847

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             + +V E M         L V L VD     +WY AK
Sbjct: 848  LEKLVPEVMEHAL----ALDVPLKVDFASGPSWYDAK 880


>gi|395791668|ref|ZP_10471124.1| DNA polymerase I [Bartonella alsatica IBS 382]
 gi|395407971|gb|EJF74591.1| DNA polymerase I [Bartonella alsatica IBS 382]
          Length = 968

 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 114/316 (36%), Positives = 166/316 (52%), Gaps = 32/316 (10%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR+AFIA
Sbjct: 680  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRKAFIA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+A+  ++ +AF  G D H+ TA  M+         G + 
Sbjct: 732  SEGHMLLSADYSQIELRILAHIADIAALKEAFAQGQDIHAITASQMF--------GGSI- 782

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
                          K+  +  RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 783  --------------KEMPSDIRRRAKAINFGIIYGISAFGLANQLGLSRQEAGRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R   +V T+ GR   +P IK+     R   ERAAIN  +QGSA
Sbjct: 829  ERFPGIRDYMETTKIFARQHGYVQTIFGRRIHYPEIKASNPQIRAFNERAAINASIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN 1103
            AD+   AM+++      ++L  K+LLQVHDE+I E P+   +    +V + M        
Sbjct: 889  ADIIRRAMIQMENALEKEKLSAKMLLQVHDELIFEVPNAECDKTITLVKKIMENATMPVL 948

Query: 1104 NLRVDLSVDAKCAQNW 1119
            +L V L V    AQNW
Sbjct: 949  SLSVPLEVKVVVAQNW 964



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 127/311 (40%), Gaps = 76/311 (24%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGP-EADFGNGKSCIWVDLLDGGGR------- 422
           A DTE   +D  Q       +++ FS+   P +A +   +    VD L GGGR       
Sbjct: 382 AFDTETTSLDPMQ------AKLVGFSLALQPGKAAYIPLEHVEGVDDLWGGGRIAEQIES 435

Query: 423 -DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
              L    P  E+ ++ K+  N  +D  V++  GL +  F  DTM ++   D+   T   
Sbjct: 436 QKALALLKPILENQAVLKIGQNIKYDWLVMKQQGLMIRSFD-DTMLLSYALDAGVLT--- 491

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
           ++L+AL+                       E ++G   I+ KD+    K        KIS
Sbjct: 492 HNLDALS-----------------------ERWLGHKPIAYKDLTHNGK--------KIS 520

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
           + A V+  Q         Y+A D+  TL+L++ LK +L+             + M   Y+
Sbjct: 521 SFAQVDLKQAT------FYAAEDADITLRLWQILKPQLV------------AQGMTKIYE 562

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P  ++L KME  G+LVDR+ L       R  +E     F      +    +  N+ 
Sbjct: 563 RIDRPLIKVLAKMEERGILVDRQIL------LRLSEELEQAAFILEEEIYQLAGEKFNIA 616

Query: 660 SDTQLRQLLFG 670
           S  QL  +LFG
Sbjct: 617 SPKQLGDILFG 627


>gi|422822258|ref|ZP_16870451.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK353]
 gi|324990009|gb|EGC21950.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK353]
          Length = 880

 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  +  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------RAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQVHDE++LE P++     +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  QLVKETMEAAI----ELAVPLVADENAGQTWYEAK 880


>gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
          Length = 949

 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 171/343 (49%), Gaps = 29/343 (8%)

Query: 781  TEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINT-ETGRLSA 839
            T Q+ R     I  + E   +  L+S ++  L    ++ K  ++H S N     TGRLS+
Sbjct: 634  TLQKLRNRHPIIKLILEHRGLKKLLSTYVEALP-KLINPKTNKIHTSFNQTVVSTGRLSS 692

Query: 840  RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
              PNLQN P  +    +IR+AFIA PG  L+ ADY Q+ELRI+AHL+  ++ML AF +G 
Sbjct: 693  SNPNLQNIPVRDDYGREIRKAFIAEPGCVLLSADYSQVELRIMAHLSGDRNMLSAFASGQ 752

Query: 900  DFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGK 959
            D H+ TA  ++                    K P+   ++  +  RRKAK  NF I YG 
Sbjct: 753  DIHAATAARIF--------------------KVPI---EEVTSDMRRKAKTANFGIIYGI 789

Query: 960  TPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAI 1019
            +  GL+    +  +EA   +D ++    +V  + E   +E+R +  V TL GR    P I
Sbjct: 790  SAFGLSERLDIPRKEAAALIDGYFESFPDVKRYMEQAIEEARRNGSVQTLFGRKLYLPDI 849

Query: 1020 KSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEG 1079
             S     R   ER AIN P+QG+AAD+   AM+++ +  R      +++LQVHDE++   
Sbjct: 850  NSQNAGVRGFAERIAINAPIQGTAADIIKIAMIKVDEAIRHHNYRSQMMLQVHDELVFNV 909

Query: 1080 PSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            P+E  +  +  V   M        +LRV L VD     NW  A
Sbjct: 910  PTEEVDEFRQSVKHAMET----AASLRVPLIVDIGIGHNWLEA 948



 Score = 67.0 bits (162), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 95/247 (38%), Gaps = 51/247 (20%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           ++L  FAP  ED SI+K   N  +D  VL NYG+ V G   DTM    L     R    Y
Sbjct: 416 EILRRFAPLLEDASIEKTGQNMKYDISVLGNYGIGVGGRMFDTMIAHYLLQPELRHNMDY 475

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
             E   G R                          I   ++F   K KK G         
Sbjct: 476 MAEVFLGYR-------------------------TIHFGELFDDDKTKKSGK-------- 502

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
           P+E++++ E      Y+  D+  TL+L     +KL E S K            + + +  
Sbjct: 503 PIEDIRKVELGKLKDYACEDADITLQLKNIFGQKLCESSLK------------NLFFDIE 550

Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
            P   IL KME+ G+L+D   L+   +  + E +        +     P    +N+ S  
Sbjct: 551 MPLVPILAKMESNGVLIDDFALASYAETLKRELQKIERDILAYVD--LP----INISSPK 604

Query: 663 QLRQLLF 669
           Q+ +LLF
Sbjct: 605 QIGELLF 611


>gi|444915846|ref|ZP_21235971.1| DNA polymerase I [Cystobacter fuscus DSM 2262]
 gi|444712840|gb|ELW53753.1| DNA polymerase I [Cystobacter fuscus DSM 2262]
          Length = 891

 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 115/330 (34%), Positives = 170/330 (51%), Gaps = 30/330 (9%)

Query: 794  ALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEK 852
            A+ E  S+  L S ++  L    +  K+GR+H + +   T TGRLS+  PNLQN P   +
Sbjct: 590  AIIEYRSLSKLKSTYLDTL--PELVTKDGRLHTTFHQAATATGRLSSSDPNLQNIPIRTE 647

Query: 853  DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
               +IR+AFIA  G+ L+ ADY Q+ELR+LAH+A  + +LDAF    D HSRTA  ++  
Sbjct: 648  LGMEIRRAFIADEGHQLVSADYSQIELRLLAHIAEDEVLLDAFARDEDIHSRTAAEVFG- 706

Query: 913  IRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSV 972
                                 VP  K+    +RR AKM+NF IAYG +P GL+    +  
Sbjct: 707  ---------------------VPQ-KEVTKDQRRVAKMVNFGIAYGLSPYGLSTRLNIPE 744

Query: 973  EEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIER 1032
            EEA+  ++ ++     +  + +   + +R   +V TL GR R    + +  R      ER
Sbjct: 745  EEARDIIERYFTRYAGIKRYLDETVRVARERGYVETLFGRRRPMGDLSAKNRQVVQAAER 804

Query: 1033 AAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVV 1092
            AAIN P+QG+AAD+   AMLE+      ++L  ++LLQVHDE++ E P +  E  K +  
Sbjct: 805  AAINMPIQGTAADLMKKAMLEVDAALAREKLRTRMLLQVHDELLFEAPDDEVEAVKELSR 864

Query: 1093 ECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
             CM         L+V L V+      W  A
Sbjct: 865  RCM----GAVMTLKVPLKVEVGAGNTWADA 890


>gi|15615715|ref|NP_244019.1| DNA polymerase I [Bacillus halodurans C-125]
 gi|10175775|dbj|BAB06872.1| DNA polymerase I [Bacillus halodurans C-125]
          Length = 876

 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 168/309 (54%), Gaps = 29/309 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIR+AF+    +  I+A DY
Sbjct: 595  VHKGTGKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRKAFVPSEKDWFILAADY 654

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH A  + +++AF+   D H++TAM+++ H+                     
Sbjct: 655  SQIELRVLAHFAEDEKLMEAFREDMDVHTKTAMDVF-HVSQ------------------- 694

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  ++ RR AK +NF I YG +  GL+++  ++ +EA   ++ ++    +V  + +
Sbjct: 695  ---EEVTSNMRRSAKAVNFGIVYGISDYGLSQNLGITRKEAATFIERYFASYPKVKEYLD 751

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
                E+R   +V TLL R R  P + S   +QR+  ER A+NTP+QG+AAD+   AM+++
Sbjct: 752  HVIDEAREKGYVTTLLKRRRYLPDLTSRNFNQRSFAERTAMNTPIQGTAADIIKQAMVQM 811

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
            +     ++L  +LLLQVHDE+I E P E     K +V   M +       LRV L VD  
Sbjct: 812  ASRMDEEDLQSRLLLQVHDELIFEVPKEEVAQMKELVTSVMEQAV----ELRVPLKVDVA 867

Query: 1115 CAQNWYSAK 1123
            C   WY AK
Sbjct: 868  CGDTWYDAK 876


>gi|322386365|ref|ZP_08059995.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100]
 gi|417921197|ref|ZP_12564691.1| DNA-directed DNA polymerase [Streptococcus cristatus ATCC 51100]
 gi|321269589|gb|EFX52519.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100]
 gi|342834781|gb|EGU69044.1| DNA-directed DNA polymerase [Streptococcus cristatus ATCC 51100]
          Length = 880

 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 178/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  S  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAS--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  +  ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQVHDE++LE P++     +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  QLVKETMEAAI----ELAVPLVADENAGQTWYEAK 880


>gi|315222865|ref|ZP_07864749.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
 gi|315188059|gb|EFU21790.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
          Length = 881

 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 179/347 (51%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRYLQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + +++AF+
Sbjct: 622  SVDPNLQNIPIRLEQGRL-IRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDEHLIEAFR 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------GIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVETLFHRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         ++LLQVHDE++
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALTDGNFKTRMLLQVHDEIV 838

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P       K +V + M         L V L  D    + WY AK
Sbjct: 839  LEVPENELTAIKTLVKDIMESAI----ELVVPLKADESAGKTWYEAK 881


>gi|50913551|ref|YP_059523.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
 gi|50902625|gb|AAT86340.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
          Length = 880

 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 182/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I  +  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILAYRQITKLQSTYVIGLQDYILADGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 621  SVDPNLQNIPIRLEQGRL-IRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFN 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK       D  A++RR AK +NF I 
Sbjct: 680  EGADIHTSTAMRVF-----------------GIDKAA-----DVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGITRKQAKTYIDTYFERYPRIKAYMENVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  +      K+LLQVHDE++
Sbjct: 778  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIV 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P++     K +V + M        +L V L VD    Q+WY AK
Sbjct: 838  LEVPNDELTAIKKLVKDTMEAAV----DLAVPLCVDESTGQSWYEAK 880


>gi|407477882|ref|YP_006791759.1| DNA polymerase I [Exiguobacterium antarcticum B7]
 gi|407061961|gb|AFS71151.1| DNA polymerase I [Exiguobacterium antarcticum B7]
          Length = 865

 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 35/320 (10%)

Query: 812  LQGSNVSG------KNGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFI-A 863
            LQ + V G      ++G++H        +TGRLS+  PNLQN P   ++  KIR+AF+ +
Sbjct: 573  LQSTYVEGLQKVIKEDGKIHTRFAQTIAQTGRLSSVNPNLQNIPVRIEEGRKIRKAFVPS 632

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
             PG SL  ADY Q+ELR++AH++  ++++ AF    D H++TA +++      VE     
Sbjct: 633  EPGWSLYAADYSQIELRVMAHMSEDETLVQAFLDDADIHTQTASSVF-----GVEPN--- 684

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
                           D   + RR+AK +NF I YG +  GL+++  +S +EA++ +D ++
Sbjct: 685  ---------------DVTGNMRRQAKAVNFGIIYGISDYGLSQNLNISRKEAQEFIDRYF 729

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                ++  + +A  +++R++  V TL+ R R  P I S   + R   ER AINTP+QGSA
Sbjct: 730  ELFPQIKLFMDAAIEKARMNGFVETLMNRRRNIPDINSKNFNLRGFAERTAINTPIQGSA 789

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKN 1103
            AD+   AML++        L  +LLLQVHDE+I E P E  +  K++V + M +      
Sbjct: 790  ADIIKKAMLDVHAALEQSPLQARLLLQVHDELIFEAPDEELDELKSLVKQAMEQTV---- 845

Query: 1104 NLRVDLSVDAKCAQNWYSAK 1123
            +L V L VD     +WY  K
Sbjct: 846  HLSVPLRVDGDAGHSWYETK 865


>gi|336309600|ref|ZP_08564584.1| DNA polymerase I [Shewanella sp. HN-41]
 gi|335866911|gb|EGM71853.1| DNA polymerase I [Shewanella sp. HN-41]
          Length = 920

 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 114/315 (36%), Positives = 162/315 (51%), Gaps = 32/315 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P   ++  +IRQAFIA  G  
Sbjct: 635  LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRK 691

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++                 G
Sbjct: 692  ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVF-----------------G 734

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
             D        D    +RR+AK +NF + YG +  GLAR   +   EA+  +D ++     
Sbjct: 735  TD------FDDVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRHEAQTYIDTYFARYPG 788

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +  +    +V TL GR    P I+     +R   ERAAIN P+QG+AAD+  
Sbjct: 789  VLKYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQGTAADIIK 848

Query: 1049 CAMLEISKNARLKELG-WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRV 1107
             AM+ I+   + +  G   +++QVHDE++ E  ++ AE  K  V E M++      NL V
Sbjct: 849  KAMISIANWIKTETQGEIAMIMQVHDELVFEVDADKAEALKLRVCELMAQ----AANLDV 904

Query: 1108 DLSVDAKCAQNWYSA 1122
            +L  +A    NW  A
Sbjct: 905  ELLAEAGIGDNWDQA 919



 Score = 46.6 bits (109), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 105/264 (39%), Gaps = 63/264 (23%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
           L +  P  ED ++KKV  N  +D  +L N G+K+ G   DTM  + +++S  SR    G 
Sbjct: 393 LAKLRPILEDANLKKVGQNLKYDMSILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGL 452

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
           +L+ L                    G+ + GF      +DI G+   +   +   +   A
Sbjct: 453 ALKYL--------------------GHKNIGF------EDIAGKGAKQLTFNQIPLENAA 486

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
           P              Y+A D+  TL+L++ L        W    K     S+F    E  
Sbjct: 487 P--------------YAAEDADITLRLHQHL--------WPRLEKEAELASVF---TEIE 521

Query: 603 QPFGEILVKMETEGMLVDREYLS-EIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            P  ++L  +E +G+L+D   L  + E++AR   E     +     K        N+ S 
Sbjct: 522 LPLIQVLSDIERQGVLIDSMLLGQQSEELARKIDELESKAYDIAGEK-------FNLSSP 574

Query: 662 TQLRQLLFG--GKPNSKDDSESLP 683
            QL+ L F   G P +K   +  P
Sbjct: 575 KQLQVLFFEKLGYPITKKTPKGAP 598


>gi|58337813|ref|YP_194398.1| DNA polymerase I [Lactobacillus acidophilus NCFM]
 gi|227904462|ref|ZP_04022267.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796]
 gi|58255130|gb|AAV43367.1| DNA polymerase I [Lactobacillus acidophilus NCFM]
 gi|227867837|gb|EEJ75258.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796]
          Length = 886

 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 178/334 (53%), Gaps = 30/334 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            +S + +   I  + S ++  L   +V  ++GRVH   L   T TGRLS+  PNLQN P  
Sbjct: 581  VSEILDYRQIAKIQSTYVKGLL--DVIQRDGRVHTRYLQTLTATGRLSSVDPNLQNIPTR 638

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AF+ + P   +   DY Q+ELR+LAH++  ++M +AFK G D H+ TAM +
Sbjct: 639  TEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHAHTAMRI 698

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            + H+ +  E                PL+       RR AK +NF I YG +  GL+++  
Sbjct: 699  F-HLDSPDEV--------------TPLM-------RRHAKAVNFGIVYGISDYGLSKNLG 736

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            +S + AK+ +D ++ +  ++  + +   +E+R   +  T++ R R  P I +   + R+ 
Sbjct: 737  ISRKRAKEFIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMHRRRYLPDIHAKKFTVRSF 796

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER AIN+P+QGSAAD+   AM+ + K      L  K+++QVHDE+I + P +  E  K 
Sbjct: 797  AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKK 856

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            IV E M         L V L  D+    NWY AK
Sbjct: 857  IVPEIMQSAV----KLDVPLIADSGWGHNWYDAK 886


>gi|357050168|ref|ZP_09111376.1| hypothetical protein HMPREF9478_01359 [Enterococcus saccharolyticus
            30_1]
 gi|355381991|gb|EHG29101.1| hypothetical protein HMPREF9478_01359 [Enterococcus saccharolyticus
            30_1]
          Length = 881

 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 182/346 (52%), Gaps = 36/346 (10%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D LI   I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLKEQAPIVEDILIYRQIAKIQSTYVEGLLKVIQGDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P   ++  KIR+AF+    + +I + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLEEGRKIREAFVPRAKDWVIYSSDYSQIELRVLAHISNDEHLKAAFVE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TAM ++                 G   P     ++   + RR+AK +NF I Y
Sbjct: 682  GQDIHSSTAMRVF-----------------GISTP-----EEVTPNMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  ++ + A++ +D ++ +   V T+ E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEEVVREAKDKGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVIL 1077
             I S   + R   ER AINTP+QGSAAD+   AM+++ +  + ++L   +LLQVHDE++ 
Sbjct: 780  DINSRNFNLRTFAERTAINTPIQGSAADILKIAMIDLDRRLKEEKLQATMLLQVHDELVF 839

Query: 1078 EGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            E P +  E   A+V E M        +L V L  D+   + WY AK
Sbjct: 840  EVPEDELERLDALVKEVMENAV----SLHVPLLTDSNWGKTWYEAK 881


>gi|325842039|ref|ZP_08167576.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
 gi|325489761|gb|EGC92117.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
          Length = 878

 Score =  182 bits (463), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 183/340 (53%), Gaps = 33/340 (9%)

Query: 787  EACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQ 845
            +A   I ++ E  ++  L S +I  L+ +  S  +G+VH   N   T+TGRLS+  PNLQ
Sbjct: 569  DAHPIIKSIMEYRTLTKLYSTYIEGLKKACYS--DGKVHTIFNQALTQTGRLSSIEPNLQ 626

Query: 846  NQPA-LEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHS 903
            N P  LE+ R  IR+AF+ +  G  ++ ADY Q+ELRILAH++N +S+++AFK G D H 
Sbjct: 627  NIPIRLEEGRL-IRKAFVPSEEGWVILGADYSQIELRILAHISNTESLIEAFKEGEDIHK 685

Query: 904  RTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVG 963
            +TAM+++          +V  E    D              RR AK +NF I YG +  G
Sbjct: 686  KTAMDVF----------KVSEEEMTSDL-------------RRSAKAINFGIIYGMSAFG 722

Query: 964  LARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLT 1023
            L+ +  ++ +EAKK +D +      +  + E   K+++   +  TL  R R  P +    
Sbjct: 723  LSENLNITQKEAKKYIDHYLKTYSGINQYMEDTVKDAKFHGYATTLFNRRRYIPELSQKN 782

Query: 1024 RSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSES 1083
             + R   ER A+N P+QG+AAD+   AM++++   + K++  +LLLQVHDE+I E P E 
Sbjct: 783  YALRQFGERTAMNAPIQGTAADIIKKAMIDVANAMKEKQVKSRLLLQVHDELIFEVPQEE 842

Query: 1084 AEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +    +++E ++K       L+V L  D      WY AK
Sbjct: 843  LD----LMIELVTKTMEDVVKLQVPLKADYSYGPTWYDAK 878


>gi|293376455|ref|ZP_06622684.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
 gi|292644877|gb|EFF62958.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
          Length = 878

 Score =  182 bits (463), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 183/340 (53%), Gaps = 33/340 (9%)

Query: 787  EACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQ 845
            +A   I ++ E  ++  L S +I  L+ +  S  +G+VH   N   T+TGRLS+  PNLQ
Sbjct: 569  DAHPIIKSIMEYRTLTKLYSTYIEGLKKACYS--DGKVHTIFNQALTQTGRLSSIEPNLQ 626

Query: 846  NQPA-LEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHS 903
            N P  LE+ R  IR+AF+ +  G  ++ ADY Q+ELRILAH++N +S+++AFK G D H 
Sbjct: 627  NIPIRLEEGRL-IRKAFVPSEEGWVILGADYSQIELRILAHISNTESLIEAFKEGEDIHK 685

Query: 904  RTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVG 963
            +TAM+++          +V  E    D              RR AK +NF I YG +  G
Sbjct: 686  KTAMDVF----------KVSEEEMTSDL-------------RRSAKAINFGIIYGMSAFG 722

Query: 964  LARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLT 1023
            L+ +  ++ +EAKK +D +      +  + E   K+++   +  TL  R R  P +    
Sbjct: 723  LSENLNITQKEAKKYIDHYLETYSGINQYMEDTVKDAKFHGYATTLFNRRRYIPELSQKN 782

Query: 1024 RSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSES 1083
             + R   ER A+N P+QG+AAD+   AM++++   + K++  +LLLQVHDE+I E P E 
Sbjct: 783  YALRQFGERTAMNAPIQGTAADIIKKAMIDVANAMKEKQVKSRLLLQVHDELIFEVPQEE 842

Query: 1084 AEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +    +++E ++K       L+V L  D      WY AK
Sbjct: 843  LD----LMIELVTKTMEDVVKLQVPLKADYSYGPTWYDAK 878


>gi|422850356|ref|ZP_16897026.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK150]
 gi|325695817|gb|EGD37714.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK150]
          Length = 880

 Score =  182 bits (463), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  +  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQVHDE++LE P++     +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  QLVKETMEAAI----KLAVPLVADENAGQTWYEAK 880


>gi|89100389|ref|ZP_01173253.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
 gi|89084908|gb|EAR64045.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
          Length = 877

 Score =  182 bits (463), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 115/321 (35%), Positives = 171/321 (53%), Gaps = 36/321 (11%)

Query: 812  LQGSNVSG-------KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI- 862
            LQ + + G       K G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+ 
Sbjct: 584  LQSTYIEGLLKVTDKKTGKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVP 643

Query: 863  AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQV 922
            +  G  +  ADY Q+ELR+LAH+A  + +++AF+   D H++TAM ++      V  G+V
Sbjct: 644  SEKGWVIFAADYSQIELRVLAHIAGDEKLIEAFREDQDVHTKTAMEVF-----HVSEGEV 698

Query: 923  LLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLW 982
                               ++ RR AK +NF I YG +  GL++   ++ +EA + +D +
Sbjct: 699  T------------------SNMRRHAKAVNFGIVYGISDYGLSQSLGITRKEAGQFIDRY 740

Query: 983  YNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGS 1042
                  V  + +   +E++   +V TLL R R  P I S   + R+  ER A+NTP+QGS
Sbjct: 741  LESYPGVREYMDDIIQEAKQKGYVSTLLHRRRYLPEITSRNFNLRSFAERTAMNTPIQGS 800

Query: 1043 AADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGK 1102
            AADV   AM++++   R + L  +LLL VHDE+I E P E  E+ K IV + M       
Sbjct: 801  AADVIKKAMIDMADRLREEGLQSRLLLSVHDELIFEAPEEEIEILKRIVPDVMENTV--- 857

Query: 1103 NNLRVDLSVDAKCAQNWYSAK 1123
             +L V L VD      W+ AK
Sbjct: 858  -DLDVPLKVDFSYGPTWFDAK 877


>gi|385816115|ref|YP_005852506.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus 2038]
 gi|325126152|gb|ADY85482.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 886

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 184/344 (53%), Gaps = 33/344 (9%)

Query: 784  EAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRP 842
            + +E    +S + E   I  + S ++  L    +  ++GR+H   L   T TGRLS+  P
Sbjct: 572  QLKEQSPVVSDILEYRQISKIQSTYVKGLLDV-IDERDGRIHTRYLQTLTATGRLSSVDP 630

Query: 843  NLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            NLQN P   ++  +IR+AF+ + P   +   DY Q+ELR+LAH++   +M +AFK G D 
Sbjct: 631  NLQNIPTRTEEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDI 690

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TAM ++ H+ +  E   +                     +RR+AK +NF I YG + 
Sbjct: 691  HAHTAMKIF-HLSSVDEVTSL---------------------QRRRAKAVNFGIVYGISD 728

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GL+++  +S ++AK+ +D ++++   +  + +   K++R   +  T++ R R  P I +
Sbjct: 729  YGLSKNLDISRKQAKEFIDEYFDQYPGIQAYMDWAVKDAREKGYAETIMHRRRYLPDIHA 788

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEG 1079
               + R+  ER AIN+P+QGSAAD+   AM+ + K  +L ELG   K+++QVHDE+I + 
Sbjct: 789  KNFNVRSFAERTAINSPIQGSAADIMKIAMINMQK--KLDELGLKTKMVVQVHDELIFDV 846

Query: 1080 PSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            P++  E  + IV   M         L V L  DA    +WY AK
Sbjct: 847  PADELETIQKIVPSVMQAAV----KLDVPLVADASWGHDWYEAK 886


>gi|257869278|ref|ZP_05648931.1| DNA polymerase A [Enterococcus gallinarum EG2]
 gi|257803442|gb|EEV32264.1| DNA polymerase A [Enterococcus gallinarum EG2]
          Length = 881

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 182/346 (52%), Gaps = 36/346 (10%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D LI   I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLKEQAPIVEDILIYRQIAKIQSTYVEGLLKVIQGDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P   ++  KIR+AF+    + +I + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLEEGRKIREAFVPRAKDWVIYSSDYSQIELRVLAHISNDEHLKAAFVE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TAM ++                 G   P     ++   + RR+AK +NF I Y
Sbjct: 682  GQDIHSSTAMRVF-----------------GISTP-----EEVTPNMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  ++ + A++ +D ++ +   V T+ E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEEVVREAKDKGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVIL 1077
             I S   + R   ER AINTP+QGSAAD+   AM+++ +  + ++L   +LLQVHDE++ 
Sbjct: 780  DINSRNFNLRTFAERTAINTPIQGSAADILKIAMIDLDRRLKEEKLQATMLLQVHDELVF 839

Query: 1078 EGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            E P +  E   A+V E M        +L V L  D+   + WY AK
Sbjct: 840  EVPEDELERLDALVKEVMENAV----SLHVPLLTDSNWGKTWYEAK 881


>gi|29726371|pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
            Complexed To 9 Base Pairs Of Duplex Dna.
 gi|29726374|pdb|1L3T|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
            Product Complex With 10 Base Pairs Of Duplex Dna
            Following Addition Of A Single Dttp Residue
 gi|29726377|pdb|1L3U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
            Product Complex With 11 Base Pairs Of Duplex Dna
            Following Addition Of A Dttp And A Datp Residue.
 gi|29726380|pdb|1L3V|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
            Product Complex With 15 Base Pairs Of Duplex Dna
            Following Addition Of Dttp, Datp, Dctp, And Dgtp
            Residues.
 gi|29726383|pdb|1L5U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
            Product Complex With 12 Base Pairs Of Duplex Dna
            Following Addition Of A Dttp, A Datp, And A Dctp Residue.
 gi|47168372|pdb|1NJW|A Chain A, Guanine-Thymine Mismatch At The Polymerase Active Site
 gi|47168375|pdb|1NJX|A Chain A, Thymine-Guanine Mismatch At The Polymerase Active Site
 gi|47168378|pdb|1NJY|A Chain A, Thymine-Thymine Mismatch At The Polymerase Active Site
 gi|47168381|pdb|1NJZ|A Chain A, Cytosine-thymine Mismatch At The Polymerase Active Site
 gi|47168384|pdb|1NK0|A Chain A, Adenine-Guanine Mismatch At The Polymerase Active Site
 gi|47168387|pdb|1NK4|A Chain A, Guanine-Guanine Mismatch At The Polymerase Active Site
 gi|47168390|pdb|1NK5|A Chain A, Adenine-Adenine Mismatch At The Polymerase Active Site
 gi|47168393|pdb|1NK6|A Chain A, Cytosine-Cytosine Mismatch At The Polymerase Active Site
 gi|47168396|pdb|1NK7|A Chain A, Guanine-Adenine Mismatch At The Polymerase Active Site
 gi|47168399|pdb|1NK8|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
            Guanine-Thymine Mismatch After A Single Round Of Primer
            Extension, Following Incorporation Of Dctp.
 gi|47168402|pdb|1NK9|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
            Guanine-Thymine Mismatch After Two Rounds Of Primer
            Extension, Following Incorporation Of Dctp And Dgtp.
 gi|47168405|pdb|1NKB|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
            Guanine-Thymine Mismatch After Three Rounds Of Primer
            Extension, Following Incorporation Of Dctp, Dgtp, And
            Dttp.
 gi|47168408|pdb|1NKC|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
            Guanine-Thymine Mismatch After Five Rounds Of Primer
            Extension, Following Incorporation Of Dctp, Dgtp, Dttp,
            And Datp.
 gi|47168411|pdb|1NKE|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
            Cytosine-Thymine Mismatch After A Single Round Of Primer
            Extension, Following Incorporation Of Dctp.
 gi|58177300|pdb|1XC9|A Chain A, Structure Of A High-Fidelity Polymerase Bound To A
            Benzo[a]pyrene Adduct That Blocks Replication
 gi|157834270|pdb|1XWL|A Chain A, Bacillus Stearothermophilus (Newly Identified Strain As Yet
            Unnamed) Dna Polymerase Fragment
          Length = 580

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 171/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 305  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 364

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 365  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 401

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 402  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 461

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 462  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 519

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L   LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 520  KEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 575

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 576  WYDAK 580


>gi|225016393|ref|ZP_03705585.1| hypothetical protein CLOSTMETH_00296, partial [Clostridium
            methylpentosum DSM 5476]
 gi|224950835|gb|EEG32044.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum DSM
            5476]
          Length = 890

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 163/308 (52%), Gaps = 28/308 (9%)

Query: 817  VSGKNGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+G + RVH       T TGR+S+  PN+QN P   +   ++R+ F+A PG  L+ ADY 
Sbjct: 609  VTGPDQRVHSVFRQTETRTGRISSTEPNMQNIPIRTELGSQMRKFFVAKPGCVLLDADYS 668

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRILAH++N   M+ AF+ G D H+ TA  ++                      P  
Sbjct: 669  QIELRILAHISNDSRMITAFREGADIHTATASQVF--------------------GVPAE 708

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            +L    A  RR+AK +NF I YG     L++D  VSV EAK+ ++ + +    V  +   
Sbjct: 709  VLP---AELRRRAKAINFGIVYGIGAYSLSQDINVSVAEAKEYIENYLHTYSGVRQYMND 765

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              + S    +V T+ GR R  P I S   + +   ER A+NTP+QG+AAD+   AM+++ 
Sbjct: 766  IVESSAKSGYVKTMFGRVRHLPEITSSNHNTKAFGERVALNTPIQGTAADIIKIAMVKVY 825

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
            +  + + L  +L+LQVHDE+++E     A  AK I+ E M        +L V LSVD   
Sbjct: 826  RRLKEEGLSAQLILQVHDELLIEVSKADAPRAKVILKEEMEH----AADLSVPLSVDVSE 881

Query: 1116 AQNWYSAK 1123
             +NWY AK
Sbjct: 882  GENWYDAK 889


>gi|94986547|ref|YP_594480.1| DNA polymerase I [Lawsonia intracellularis PHE/MN1-00]
 gi|442555361|ref|YP_007365186.1| DNA polymerase I [Lawsonia intracellularis N343]
 gi|94730796|emb|CAJ54158.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Lawsonia
            intracellularis PHE/MN1-00]
 gi|441492808|gb|AGC49502.1| DNA polymerase I [Lawsonia intracellularis N343]
          Length = 868

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 122/349 (34%), Positives = 177/349 (50%), Gaps = 32/349 (9%)

Query: 780  ATEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
            +T QE  E        I  + E   ++ L S ++ PL    + GK+GRVH + N + T T
Sbjct: 545  STSQEVLEKLSGQHPIIDTILEYRKLEKLRSTYLEPL--PRLIGKDGRVHTTFNQLATAT 602

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+  PNLQN P       ++R  F A  GN LI ADY Q+ELR+LAH +   ++L A
Sbjct: 603  GRLSSSNPNLQNIPIRGSLGQRMRSCFTASQGNLLISADYSQVELRVLAHYSKDPTLLTA 662

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F  G D H+RTA  +Y       E  Q                ++  A ERR AK +NF 
Sbjct: 663  FLEGADIHTRTASLLY-------EKSQ----------------EEVTADERRNAKTINFG 699

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            + YG  P  LA++   ++ EAKK +  ++   Q +  + +  +  ++   +V T+ GR R
Sbjct: 700  LIYGMGPQKLAQELNTTLNEAKKFIQRYFEHLQAIKKFYDQVEHSAKEYGYVTTIAGRRR 759

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDE 1074
              P I S     +    R AINT +QGSAAD+   AML +  +  L ++  +L+LQVHDE
Sbjct: 760  LLPDIHSENIQLQALARRQAINTIIQGSAADIIKIAMLTVHGDTTLAKMDAQLILQVHDE 819

Query: 1075 VILEGPSESA-EVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            +++E P ++A EV K I +  MS    G   L V L        +W SA
Sbjct: 820  LVVEAPEDNAKEVGKRIAM-LMSNVTPGGKPLIVPLVTQWSIGYDWGSA 867


>gi|399076674|ref|ZP_10752127.1| DNA polymerase I [Caulobacter sp. AP07]
 gi|398037018|gb|EJL30222.1| DNA polymerase I [Caulobacter sp. AP07]
          Length = 978

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 153/303 (50%), Gaps = 26/303 (8%)

Query: 819  GKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQL 877
            G   R+H S  +  T TGRLS+  PNLQN P   ++  KIR+AFIA PG  LI ADY Q+
Sbjct: 696  GGGNRIHTSYALAATTTGRLSSSDPNLQNIPIRTEEGRKIRKAFIAAPGKVLISADYSQI 755

Query: 878  ELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLL 937
            ELR+LAH+ +   +  AF+ G D H+ TA  M+                       VP+ 
Sbjct: 756  ELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMFN----------------------VPI- 792

Query: 938  KDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEAR 996
             +   SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + EA 
Sbjct: 793  -EGMPSEVRRRAKAINFGIVYGISAFGLANQLSIPQGEAGAYIKTYFERFPGIQAYMEAT 851

Query: 997  KKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISK 1056
            K   R   +V T+ GR    P I   + + R   ERAAIN P+QG+AADV   AM+ +  
Sbjct: 852  KAFVREHGYVTTIFGRKINIPDIGGKSVAHRQFAERAAINAPIQGAAADVMRRAMVRMPG 911

Query: 1057 NARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCA 1116
              +   L  K+LLQVHDE++ E P   A+    +  E M         + V L+V+A+ A
Sbjct: 912  ALKAAGLSSKMLLQVHDELVFEAPEAEAQATIEVAREIMQGAAEPAVAISVPLTVEARAA 971

Query: 1117 QNW 1119
             NW
Sbjct: 972  ANW 974


>gi|333905983|ref|YP_004479854.1| DNA polymerase I [Streptococcus parauberis KCTC 11537]
 gi|333121248|gb|AEF26182.1| DNA polymerase I [Streptococcus parauberis KCTC 11537]
          Length = 879

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 183/335 (54%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + +   I  L S +++ LQ   +S  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILDYRQISKLQSTYVIGLQDYIMS--DGKIHTRYIQDLTQTGRLSSSDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK   D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFLPSSEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKENADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +K      +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKE-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             ++ ++AK  ++ ++     +  + E   +++R   +V TL  R R  P I S   + R+
Sbjct: 729  GITRKKAKDYIETYFERYPGIKEYMETVVRDARDTGYVETLFNRRRELPDINSRNFNIRS 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + K     +   K+LLQVHDE++LE P++  E  K
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDKALNEGQFKAKMLLQVHDEIVLEVPNDELEAIK 848

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            A+V + M     G  +L V L  D    + WY AK
Sbjct: 849  ALVKKTME----GAVDLAVPLLADENTGKTWYEAK 879


>gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
 gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
          Length = 942

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 110/304 (36%), Positives = 164/304 (53%), Gaps = 28/304 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ KNGRVH S +   T TGRLS+R PNLQN P  ++   +IR+AF A  G +LI ADY 
Sbjct: 662  LADKNGRVHTSFIQTGTATGRLSSRDPNLQNIPIRDEAGRRIRKAFQAEKGKNLISADYA 721

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+EL ILAHL+  K+++ AF+ G D H+ TA  ++      +  G+VL +          
Sbjct: 722  QIELVILAHLSQDKNLVQAFQEGTDVHAATAALIF-----GMPIGEVLPDM--------- 767

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR AK +NF + YG +   L+   ++   +A   ++ ++     V  + E 
Sbjct: 768  ---------RRIAKTINFGVMYGMSAFRLSNALRIPRRQAADFIETYFKTYSGVHIFMEE 818

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             K+ +R   +V TL+GR R   AI S  + ++   ER AINTP+QGSAAD+   AML++ 
Sbjct: 819  LKESARRKGYVETLMGRRRYIYAINSANKLEQAGAERVAINTPIQGSAADIVKTAMLKVQ 878

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
               +  +L  KLLLQVHDE+I E P +  E  K ++ + M         L V L V+ + 
Sbjct: 879  NALQAHKLQAKLLLQVHDELICEAPEKETETVKTLLRQEMESVV----KLLVPLRVNIES 934

Query: 1116 AQNW 1119
             + W
Sbjct: 935  GKTW 938


>gi|423199084|ref|ZP_17185667.1| DNA polymerase I [Aeromonas hydrophila SSU]
 gi|404629621|gb|EKB26366.1| DNA polymerase I [Aeromonas hydrophila SSU]
          Length = 918

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 178/358 (49%), Gaps = 37/358 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  +    L E   +  L S +   LPL    +  + GRVH 
Sbjct: 593  KGAPSTAEEVLA---ELAETYELPRLLMEHRGLAKLKSTYTDKLPLM---IKPQTGRVHT 646

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 647  SYHQAVAATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPCAGYKLVAADYSQIELRIMAHL 706

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +L AF  G D H  TA  ++    +AV +                         R
Sbjct: 707  SGDKGLLTAFAEGKDIHKATAAEVFGVALDAVTSDM-----------------------R 743

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GLA+   +   EA+K +DL++     VL + E  +++++   +
Sbjct: 744  RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQAKAQGY 803

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKELG 1064
            V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R +++  
Sbjct: 804  VETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDDWIRGIEDES 863

Query: 1065 WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
             ++L+QVHDE++ E   E  E   AI+ + MS        L V L V+A    NW  A
Sbjct: 864  IRMLMQVHDELVFEIREEKLEECIAIIKDKMS----AAAELHVPLVVEAGTGDNWDQA 917



 Score = 49.7 bits (117), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 118/303 (38%), Gaps = 64/303 (21%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA--DFGNGKSCIWVDLLDGGGRDLLN 426
           + A DTE   +D  +   V     + F+I  G  A   FG+      V L +     +L 
Sbjct: 340 LFAFDTETTSLDYMEARVVG----VSFAIEPGKAAYVPFGHDYLGAPVQLTEAV---VLG 392

Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
           +  P  EDP+  KV  N  +D +VL N+G+++ G   DTM  + + +S            
Sbjct: 393 KLKPLLEDPTRLKVGQNLKYDRNVLLNHGIELQGIAYDTMLESYVLNS------------ 440

Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
            T  R  M    + Y             +  IS +DI G+   +   +  ++   AP   
Sbjct: 441 -TASRHDMDSLARRYLN-----------VETISFEDIAGKGVKQLTFNQIELEQAAP--- 485

Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFG 606
                      Y+A D+  TL+L+++L        W   GK      +   + E   P  
Sbjct: 486 -----------YAAEDADITLRLHQAL--------W---GKLAAEPGLARVFSEIELPLL 523

Query: 607 EILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQ 666
            +L +ME  G  ++ + L +  +    E E  +    K A K     +  N+ S  QL +
Sbjct: 524 PVLARMERLGTTIEPKLLHQQSQ----EIEVRLAELEKQAHKLA--GQEFNLSSPKQLGE 577

Query: 667 LLF 669
           +LF
Sbjct: 578 ILF 580


>gi|29726425|pdb|1LV5|A Chain A, Crystal Structure Of The Closed Conformation Of Bacillus Dna
            Polymerase I Fragment Bound To Dna And Dctp
 gi|29726426|pdb|1LV5|B Chain B, Crystal Structure Of The Closed Conformation Of Bacillus Dna
            Polymerase I Fragment Bound To Dna And Dctp
          Length = 580

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 171/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 305  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 364

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 365  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 401

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 402  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 461

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 462  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 519

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L   LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 520  KEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 575

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 576  WYDAK 580


>gi|457094480|gb|EMG24999.1| DNA polymerase I [Streptococcus parauberis KRS-02083]
          Length = 879

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 183/335 (54%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + +   I  L S +++ LQ   +S  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILDYRQISKLQSTYVIGLQDYIMS--DGKIHTRYIQDLTQTGRLSSSDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK   D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFLPSSEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKENADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +K      +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKE-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             ++ ++AK  ++ ++     +  + E   +++R   +V TL  R R  P I S   + R+
Sbjct: 729  GITRKKAKDYIETYFERYPGIKEYMETVVRDARDTGYVETLFNRRRELPDINSRNFNIRS 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + K     +   K+LLQVHDE++LE P++  E  K
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDKALNEGQFKAKMLLQVHDEIVLEVPNDELEAIK 848

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            A+V + M     G  +L V L  D    + WY AK
Sbjct: 849  ALVKKTME----GAVDLAVPLLADENTGKTWYEAK 879


>gi|417788013|ref|ZP_12435696.1| DNA polymerase I [Lactobacillus salivarius NIAS840]
 gi|334308190|gb|EGL99176.1| DNA polymerase I [Lactobacillus salivarius NIAS840]
          Length = 892

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 169/309 (54%), Gaps = 28/309 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            VS  +G+ H       T TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  +DY
Sbjct: 610  VSKTDGKAHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDY 669

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++  K+M +AFK G D H+ TAM ++                   D P  
Sbjct: 670  SQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIF-----------------NVDSPD- 711

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                +   + RR+AK +NF I YG +  GL+++  +S ++AK+ +D + +    V  + E
Sbjct: 712  ----EVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYME 767

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               + ++ + +V T+  R R  P IKS   + R+  ER A+N+P+QGSAAD+   AM+ +
Sbjct: 768  KIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSAADIIKVAMINM 827

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
             +  + K L  K+LLQVHDE+I E P+E   + + +V + M         L V L V++K
Sbjct: 828  QEMLKEKNLQAKMLLQVHDELIFEAPTEEIPLLEDMVPKVMDSAV----KLDVPLKVESK 883

Query: 1115 CAQNWYSAK 1123
              Q W+  K
Sbjct: 884  HGQTWFDTK 892


>gi|415884119|ref|ZP_11546148.1| DNA polymerase I [Bacillus methanolicus MGA3]
 gi|387591914|gb|EIJ84231.1| DNA polymerase I [Bacillus methanolicus MGA3]
          Length = 877

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 167/309 (54%), Gaps = 29/309 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADY 874
            V  K  +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAFI    + +I  ADY
Sbjct: 596  VDPKTNKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSEKDWVIFAADY 655

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+AN + ++ AFK   D H++TAM ++ H+                     
Sbjct: 656  SQIELRVLAHIANDEKLIQAFKEDLDIHTKTAMEVF-HVEK------------------- 695

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  ++ RR AK +NF I YG +  GL++   ++ +EA K ++ +      V  + E
Sbjct: 696  ---EEVTSNMRRHAKAVNFGIVYGISDYGLSQSLGITRKEAAKFIERYLESYPGVKEYME 752

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               K+++   +V T+L R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 753  EIVKDAKQKGYVSTILHRRRYLPEITSRNYNVRSFAERTAMNTPIQGSAADIIKKAMIDM 812

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
            ++  + + L  +LLLQVHDE+I E P +  E  K IV + M         L+V L VD  
Sbjct: 813  AERLKAEGLKTRLLLQVHDELIFEAPKDEIEKLKEIVPDVMENAV----ELKVPLKVDYS 868

Query: 1115 CAQNWYSAK 1123
                W+ AK
Sbjct: 869  FGPTWFDAK 877


>gi|122920392|pdb|2HHQ|A Chain A, O6-Methyl-Guanine:t Pair In The Polymerase-10 Basepair
            Position
 gi|122920396|pdb|2HHS|A Chain A, O6-Methyl:c Pair In The Polymerase-10 Basepair Position
 gi|122920400|pdb|2HHT|A Chain A, C:o6-Methyl-Guanine Pair In The Polymerase-2 Basepair
            Position
 gi|122920414|pdb|2HHU|A Chain A, C:o6-Methyl-Guanine In The Polymerase Postinsertion Site (-
            1 Basepair Position)
 gi|122920417|pdb|2HHV|A Chain A, T:o6-Methyl-Guanine In The Polymerase-2 Basepair Position
 gi|122920428|pdb|2HHX|A Chain A, O6-Methyl-Guanine In The Polymerase Template Preinsertion
            Site
 gi|122920472|pdb|2HW3|A Chain A, T:o6-Methyl-Guanine Pair In The Polymerase Postinsertion
            Site (-1 Basepair Position)
          Length = 580

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 171/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 305  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 364

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 365  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 401

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 402  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 461

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 462  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 519

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L   LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 520  KEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 575

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 576  WYDAK 580


>gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1]
          Length = 830

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 175/345 (50%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L   +I PL  + V  K  R+H   N   T TGRLS
Sbjct: 515  AVLEALREAHPIVDRILQYRELSKLKGTYIDPLP-ALVHPKTNRLHTRFNQTATATGRLS 573

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G  L+V DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 574  SSDPNLQNIPVRTPLGQRIRRAFVAEEGWKLVVLDYSQIELRVLAHLSGDENLIRVFQEG 633

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV++                         RR AK +NF + YG
Sbjct: 634  QDIHTQTASWMFGVPPEAVDSLM-----------------------RRAAKTINFGVLYG 670

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+ +  +  EEA   ++ ++    +V  W E    E R   +V TL GR R  P 
Sbjct: 671  MSAHRLSGELAIPYEEAVAFIERYFQSYPKVRAWIEKTLAEGRERGYVETLFGRRRYVPD 730

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            + S  +S R   ER A N PVQG+AAD+   AM+++    RL+ELG ++LLQVHDE++LE
Sbjct: 731  LASRVKSIREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLQELGARMLLQVHDELVLE 788

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E AE         M + +     L+V L V+    ++W SAK
Sbjct: 789  APKEQAEEVAQEAKRTMEEVW----PLKVPLEVEVGIGEDWLSAK 829


>gi|4389065|pdb|3BDP|A Chain A, Dna Polymerase IDNA COMPLEX
 gi|4389072|pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
            Complexed To 11 Base Pairs Of Duplex Dna After Addition
            Of Two Datp Residues
 gi|4389123|pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
            Complexed To 9 Base Pairs Of Duplex Dna
          Length = 580

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 171/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 305  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 364

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 365  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 401

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 402  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 461

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 462  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 519

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L   LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 520  KEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 575

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 576  WYDAK 580


>gi|385840195|ref|YP_005863519.1| DNA polymerase I [Lactobacillus salivarius CECT 5713]
 gi|300214316|gb|ADJ78732.1| DNA polymerase I [Lactobacillus salivarius CECT 5713]
          Length = 892

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 170/309 (55%), Gaps = 28/309 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            VS K+G+ H       T TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  +DY
Sbjct: 610  VSKKDGKAHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDY 669

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++  K+M +AFK G D H+ TAM ++                   D P  
Sbjct: 670  SQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIF-----------------NVDSPD- 711

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                +   + RR+AK +NF I YG +  GL+++  +S ++AK+ +D + +    V  + E
Sbjct: 712  ----EVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYME 767

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               + ++ + +V T+  R R  P IKS   + R+  ER A+N+P+QGSAAD+   AM+ +
Sbjct: 768  KIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSAADIIKVAMINM 827

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
             +  + K L  K+LLQVHDE+I E P++   + + +V + M         L V L V++K
Sbjct: 828  QEMLKEKNLQAKMLLQVHDELIFEAPTKEIPLLEDMVPKVMDSAV----KLDVPLKVESK 883

Query: 1115 CAQNWYSAK 1123
              Q W+  K
Sbjct: 884  HGQTWFDTK 892


>gi|339302165|ref|ZP_08651231.1| DNA-directed DNA polymerase I [Streptococcus agalactiae ATCC 13813]
 gi|319744359|gb|EFV96719.1| DNA-directed DNA polymerase I [Streptococcus agalactiae ATCC 13813]
          Length = 880

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 183/337 (54%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VTKILEYRQITKLQSTYIIGLQDYIL--EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    N+++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     ++   ++RR AK +NF I YG +  GL+ + 
Sbjct: 692  VF-----------------GIEKP-----ENVTPNDRRNAKAVNFGIVYGISDFGLSHNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +  + AK+ +D ++     +  + E   +E++   +V TL  R R  P I S   + R 
Sbjct: 730  GIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQ 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + +   L + G+  K+LLQVHDE++LE P+E    
Sbjct: 790  FAERTAINSPIQGSAADILKIAMINLDR--VLDKGGYKSKMLLQVHDEIVLEVPNEEIGA 847

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             K +V + M        +L V L  D    + WY AK
Sbjct: 848  IKELVTKTMESAI----SLSVPLIADENAGETWYEAK 880


>gi|329117680|ref|ZP_08246397.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
 gi|326908085|gb|EGE54999.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
 gi|456369761|gb|EMF48661.1| DNA polymerase I [Streptococcus parauberis KRS-02109]
          Length = 879

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 183/335 (54%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + +   I  L S +++ LQ   +S  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILDYRQISKLQSTYVIGLQDYIMS--DGKIHTRYIQDLTQTGRLSSSDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK   D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFLPSSEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKENADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +K      +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKE-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             ++ ++AK  ++ ++     +  + E   +++R   +V TL  R R  P I S   + R+
Sbjct: 729  GITRKKAKDYIETYFERYPGIKEYMETVVRDARDTGYVETLFNRRRELPDINSRNFNIRS 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + K     +   K+LLQVHDE++LE P++  E  K
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDKALSEGQFKAKMLLQVHDEIVLEVPNDELEAIK 848

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            A+V + M     G  +L V L  D    + WY AK
Sbjct: 849  ALVKKTME----GAVDLAVPLLADENTGKTWYEAK 879


>gi|55670162|pdb|1U45|A Chain A, 8oxoguanine At The Pre-Insertion Site Of The Polymerase
            Active Site
 gi|55670165|pdb|1U47|A Chain A, Cytosine-8-Oxoguanine Base Pair At The Polymerase Active
            Site
 gi|55670168|pdb|1U48|A Chain A, Extension Of A Cytosine-8-Oxoguanine Base Pair
 gi|55670171|pdb|1U49|A Chain A, Adenine-8oxoguanine Mismatch At The Polymerase Active Site
 gi|55670174|pdb|1U4B|A Chain A, Extension Of An Adenine-8oxoguanine Mismatch
 gi|55670297|pdb|1UA0|A Chain A, Aminofluorene Dna Adduct At The Pre-Insertion Site Of A Dna
            Polymerase
 gi|55670300|pdb|1UA1|A Chain A, Structure Of Aminofluorene Adduct Paired Opposite Cytosine
            At The Polymerase Active Site
          Length = 580

 Score =  182 bits (463), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 171/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 305  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 364

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 365  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 401

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 402  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 461

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 462  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 519

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L   LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 520  KEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 575

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 576  WYDAK 580


>gi|150398570|ref|YP_001329037.1| DNA polymerase I [Sinorhizobium medicae WSM419]
 gi|150030085|gb|ABR62202.1| DNA polymerase I [Sinorhizobium medicae WSM419]
          Length = 1004

 Score =  182 bits (463), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 110/299 (36%), Positives = 153/299 (51%), Gaps = 26/299 (8%)

Query: 823  RVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH C     T TGRLS+  PNLQN P    +  KIR AF+A PG+ L+ ADY Q+ELR+
Sbjct: 726  RVHTCFALAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQIELRV 785

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+                       VP+  D  
Sbjct: 786  LAHVADIPQLRQAFADGVDIHAMTASEMFG----------------------VPV--DGM 821

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              E RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E  K  +
Sbjct: 822  PGEIRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKTFA 881

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P I+S   S R   ERA+IN P+QGSAAD+   AM+++      
Sbjct: 882  RENGYVETIFGRRAHYPDIRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEA 941

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             +L  ++LLQVHDE+I E      E    ++V  M        ++RV L VDA+ A NW
Sbjct: 942  AKLSARMLLQVHDELIFEVEEGEIERTIPVIVSVMENAAMPALDMRVPLKVDARAAHNW 1000


>gi|406671958|ref|ZP_11079194.1| DNA polymerase I [Facklamia hominis CCUG 36813]
 gi|405579845|gb|EKB53935.1| DNA polymerase I [Facklamia hominis CCUG 36813]
          Length = 881

 Score =  182 bits (463), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 118/348 (33%), Positives = 186/348 (53%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCSLNIN-TETGRLS 838
            A D +  L +V  I   I ++  I  LQ + ++G      ++G++H       T+TGRLS
Sbjct: 562  AADVLDKLVQVHPIIQAILDYRQIAKLQSTYLAGLQPFIKEDGKIHTRYTQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P   ++   +R AF+ +  G  ++ ADY Q+ELR+LAH++  + M  AF+ 
Sbjct: 622  STDPNLQNIPIRIEEGRLVRAAFVPSQSGWQMLGADYSQIELRVLAHISGDEHMKRAFQN 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TA  ++      ++ GQ                 +  A  RR+AK +NF I Y
Sbjct: 682  GEDIHSATARRVF-----QLDEGQ-----------------EVDADHRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + AK  +D ++ E  ++  + +   ++++ D +V TL  R R  P
Sbjct: 720  GISDYGLSQNLNISRQAAKTFIDRYFEEFPKIRQYMDEIVEQAKSDGYVSTLFHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEV 1075
             I +   + R+  ER A+N+P+QG+AAD+   AM+ +   ARL+E G   +LLLQ+HDE+
Sbjct: 780  DIHAKNFNLRSFAERTAMNSPIQGTAADIIKLAMVRL--QARLEEEGLSSRLLLQIHDEL 837

Query: 1076 ILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            ILEGP E     + +VVE M        +L V L VD     NWY  K
Sbjct: 838  ILEGPKEEMPQLQKLVVEVM----ESAADLSVPLKVDDHIGDNWYDLK 881


>gi|375091430|ref|ZP_09737723.1| DNA polymerase I [Helcococcus kunzii ATCC 51366]
 gi|374563530|gb|EHR34843.1| DNA polymerase I [Helcococcus kunzii ATCC 51366]
          Length = 878

 Score =  182 bits (463), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 176/341 (51%), Gaps = 36/341 (10%)

Query: 789  CDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCSLNINTE-TGRLSA 839
             D +S L     I  LI  +  +  L+G+ + G      K+GR+H   N     TGRLS+
Sbjct: 563  IDVLSKLRNEHEIIPLIEQYRQVSKLKGTYIDGLIKVISKDGRIHSKFNQTVAATGRLSS 622

Query: 840  RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
              PNLQN P   ++   IR+AF+A     L+ ADY Q+ELR+LA L   K+MLDAF+ G 
Sbjct: 623  TDPNLQNIPIKTEEGRMIRKAFVAGEDKLLVSADYSQIELRVLAALTKDKNMLDAFEHGI 682

Query: 900  DFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGK 959
            D H++TA  ++    + V   Q                       R +AK +NF I YG 
Sbjct: 683  DIHTKTASEVFKVDLDKVTKLQ-----------------------RSEAKAVNFGIVYGI 719

Query: 960  TPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAI 1019
            +  GL+ D  +  ++AK+ ++ +     E+  + E+  K+++ D +V TL  R R  P +
Sbjct: 720  SDYGLSEDLSIPRKQAKQYIEEYLASYPEISKYMESIVKKAKEDGYVETLFNRRRYIPEL 779

Query: 1020 KSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEG 1079
            KS   + R+  ER A+NTP+QG+AAD+   AM+ + +  + ++L  KL+LQ+HDE+I+E 
Sbjct: 780  KSSNFNVRSFGERIALNTPIQGTAADIIKIAMINVYERLKKEKLNSKLILQIHDELIIET 839

Query: 1080 PSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
                 E  K I+ E M        ++ V L V+    + WY
Sbjct: 840  DKSELEKVKKILTEEMQNAV----DINVKLLVEVDSGETWY 876


>gi|77408763|ref|ZP_00785493.1| DNA polymerase I [Streptococcus agalactiae COH1]
 gi|421147166|ref|ZP_15606858.1| DNA polymerase I [Streptococcus agalactiae GB00112]
 gi|77172608|gb|EAO75747.1| DNA polymerase I [Streptococcus agalactiae COH1]
 gi|401686177|gb|EJS82165.1| DNA polymerase I [Streptococcus agalactiae GB00112]
          Length = 880

 Score =  182 bits (463), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 183/337 (54%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ   +  ++G++H     + T+TGRLS+  PNLQN P  
Sbjct: 575  VTKILEYRQITKLQSTYIIGLQDYIL--EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    N+++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     ++   ++RR AK +NF I YG +  GL+ + 
Sbjct: 692  VF-----------------GIEKP-----ENVTPNDRRNAKAVNFGIVYGISDFGLSHNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +  + AK+ +D ++     +  + E   +E++   +V TL  R R  P I S   + R 
Sbjct: 730  GIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQ 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + +   L + G+  K+LLQVHDE++LE P+E    
Sbjct: 790  FAERTAINSPIQGSAADILKIAMINLDR--VLDKGGYKSKMLLQVHDEIVLEVPNEEIGA 847

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             K +V + M        +L V L  D    + WY AK
Sbjct: 848  IKELVTKTMESAI----SLSVPLIADENAGETWYEAK 880


>gi|350267086|ref|YP_004878393.1| DNA polymerase I superfamily [Bacillus subtilis subsp. spizizenii
            TU-B-10]
 gi|349599973|gb|AEP87761.1| DNA polymerase I superfamily [Bacillus subtilis subsp. spizizenii
            TU-B-10]
          Length = 880

 Score =  182 bits (463), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 185/347 (53%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCSLN-INTETGRL 837
            + D +  L +   I   I  +  I  LQ + V G        + +VH   N   T+TGRL
Sbjct: 561  SADVLEKLADKHEIVDYILQYRQIGKLQSTYVEGLLKVTRPDSHKVHTRFNQALTQTGRL 620

Query: 838  SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFK 896
            S+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF 
Sbjct: 621  SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDQNLIEAFT 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
               D H++TAM+++ H+               ED        +  ++ RR+AK +NF I 
Sbjct: 681  NDMDIHTKTAMDVF-HV--------------AED--------EVTSAMRRQAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+++  ++ +EA   ++ +    Q V  + E   ++++   +V TL+ R R  
Sbjct: 718  YGISDYGLSQNLGITRKEAGAFIERYLESFQGVKAYMEDSVQDAKQKGYVTTLMHRRRYI 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P + S   + R+  ER A+NTP+QGSAAD+   AM++++   + K+L  +LLLQVHDE+I
Sbjct: 778  PELTSRNFNIRSFAERTAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELI 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E P E  E+ + +V E M         L V L VD     +WY AK
Sbjct: 838  FEAPQEEIEILEKLVPEVMEHAL----ALDVPLKVDFASGPSWYDAK 880


>gi|323350933|ref|ZP_08086591.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66]
 gi|322122915|gb|EFX94621.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66]
          Length = 880

 Score =  182 bits (463), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  +  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQVHDE++LE P++     +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  QLVKETMEAAI----KLAVPLVADENAGQTWYEAK 880


>gi|307943370|ref|ZP_07658714.1| DNA polymerase I [Roseibium sp. TrichSKD4]
 gi|307773000|gb|EFO32217.1| DNA polymerase I [Roseibium sp. TrichSKD4]
          Length = 793

 Score =  182 bits (463), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 111/298 (37%), Positives = 155/298 (52%), Gaps = 24/298 (8%)

Query: 823  RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  +  T TGRLS+  PNLQN P       KIRQAF+A  G  LI ADY Q+ELR+
Sbjct: 515  RVHTSYALAATTTGRLSSSEPNLQNIPVRTAAGRKIRQAFVAEKGMKLISADYSQIELRV 574

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF+ G D H+ TA  M+      +E         G D    P++    
Sbjct: 575  LAHMADIPQLKKAFEEGLDIHAMTASEMF---GTPIE---------GMD----PMV---- 614

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +S  EA   +  ++     +  + EA KK+  
Sbjct: 615  ---RRQAKAINFGIIYGISAFGLAAQLGISRGEASDYIKTYFERFPGIKEYMEATKKQVH 671

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P + +   + RN  ERAAIN P+QGSAAD+   AM+ +       
Sbjct: 672  ATGYVTTIFGRKAHYPDVNTKNPNMRNFYERAAINAPIQGSAADILRRAMVRMEDRLLSS 731

Query: 1062 ELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            +L  ++LLQVHDE+I E P    +    ++ + M    +    L V L VDA+ A NW
Sbjct: 732  KLDAQMLLQVHDELIFEVPEVQVDATIPLIKDVMENACDPVLKLSVPLQVDARAADNW 789



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 104/259 (40%), Gaps = 63/259 (24%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           +D L    P  EDP++ K+  N  +D  V+ +YG+ V+ +  DTM ++   D+ +   GG
Sbjct: 261 KDALAILKPMLEDPAVLKIAQNLKYDWLVMTHYGVNVTSYD-DTMLLSYTVDAGK---GG 316

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
             ++ L+                       E ++G   I  K++ G  K          S
Sbjct: 317 NGMDELS-----------------------ERWLGHKPIPFKEVCGSGK----------S 343

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
            I       +   +   +Y+A D+  TL+L++ LK +L                M   Y+
Sbjct: 344 MIT----FDKVPLDKATAYAAEDADVTLRLWQVLKPRL------------ASDRMATVYE 387

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   +L +ME  G+ VDR+ LS      R   + A       A  H    +  N+G
Sbjct: 388 TLERPMVPVLARMEQRGIAVDRQMLS------RLSGDFAQGMAGLEAEIHELAGESFNIG 441

Query: 660 SDTQLRQLLFG--GKPNSK 676
           S  QL  +LFG  G P  K
Sbjct: 442 SPKQLGDILFGKMGLPGGK 460


>gi|310822212|ref|YP_003954570.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|309395284|gb|ADO72743.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 899

 Score =  182 bits (463), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 117/330 (35%), Positives = 172/330 (52%), Gaps = 30/330 (9%)

Query: 794  ALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEK 852
            A+ E  S+  L S ++  L G  +  K+GR+H + +   T TGRLS+  PNLQN P   +
Sbjct: 598  AILEYRSLSKLKSTYLDTLPG--LVAKDGRIHTTYHQAATATGRLSSSDPNLQNIPVRTE 655

Query: 853  DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
               +IR+AF+A  G  L+ ADY Q+ELR+LAH+A    +LDAF+   D HSRTA  ++  
Sbjct: 656  LGREIRRAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEIFGV 715

Query: 913  IRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSV 972
              + V+  Q                       RR AK +NF IAYG +P GL+    +SV
Sbjct: 716  TPDKVDRDQ-----------------------RRVAKTVNFGIAYGLSPHGLSTRLSISV 752

Query: 973  EEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIER 1032
            EEA+  ++ ++     +  + E   + +R   +V T+ GR R    + S  R+     ER
Sbjct: 753  EEARDIIERYFTRYAGIRRYLEDTVERARKTGYVETMFGRRRLMADLNSKNRAVAQAAER 812

Query: 1033 AAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVV 1092
            AAIN P+QG+AAD+   AML + +    + L   +LLQVHDE++ E P    +  KA+  
Sbjct: 813  AAINMPIQGTAADLIKKAMLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALAR 872

Query: 1093 ECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            +CMS        L+V L VD    + W  A
Sbjct: 873  QCMS----SVATLKVPLKVDVGAGKTWADA 898


>gi|154498262|ref|ZP_02036640.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC 29799]
 gi|150272809|gb|EDM99977.1| DNA-directed DNA polymerase [Pseudoflavonifractor capillosus ATCC
            29799]
          Length = 889

 Score =  182 bits (463), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 160/308 (51%), Gaps = 28/308 (9%)

Query: 817  VSGKNGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V   +GR+H S  N  T TGRLS+  PNLQN P   +   ++R+ F+A  G  L+ ADY 
Sbjct: 608  VIAPDGRIHTSFQNTVTATGRLSSTEPNLQNIPVRTELGAELRKMFVAPAGKVLVDADYS 667

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A  + M++AF+ G D H+ TA  ++      V   QV             
Sbjct: 668  QIELRLLAHIAGDEHMIEAFRTGEDIHTVTAAQVF-----GVPVDQVTKHM--------- 713

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     R  AK +NF I YG +   L++D  V   EAK+ ++ ++     V  +   
Sbjct: 714  ---------RSSAKAVNFGIVYGISAFSLSQDIGVPTYEAKEYIEKYFARFSGVHAYMTD 764

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
                ++ D +V TL GR R  P +KS   + R+  ER A+N P+QG+AAD+   AML + 
Sbjct: 765  VVNRAKTDGYVSTLFGRRRWLPELKSSNFNTRSFGERVALNMPIQGTAADIMKLAMLHVH 824

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
               R + L  +L+LQVHDE+I+E P E AE  KA+    +S+       L V L  DA  
Sbjct: 825  SRLREEGLQARLILQVHDELIVECPEEEAETVKAL----LSREMESVAQLAVPLIADAAA 880

Query: 1116 AQNWYSAK 1123
             ++W  AK
Sbjct: 881  GRSWAEAK 888


>gi|115378925|ref|ZP_01466060.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|115364075|gb|EAU63175.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 852

 Score =  182 bits (463), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 117/330 (35%), Positives = 172/330 (52%), Gaps = 30/330 (9%)

Query: 794  ALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEK 852
            A+ E  S+  L S ++  L G  +  K+GR+H + +   T TGRLS+  PNLQN P   +
Sbjct: 551  AILEYRSLSKLKSTYLDTLPG--LVAKDGRIHTTYHQAATATGRLSSSDPNLQNIPVRTE 608

Query: 853  DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
               +IR+AF+A  G  L+ ADY Q+ELR+LAH+A    +LDAF+   D HSRTA  ++  
Sbjct: 609  LGREIRRAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEIFGV 668

Query: 913  IRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSV 972
              + V+  Q                       RR AK +NF IAYG +P GL+    +SV
Sbjct: 669  TPDKVDRDQ-----------------------RRVAKTVNFGIAYGLSPHGLSTRLSISV 705

Query: 973  EEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIER 1032
            EEA+  ++ ++     +  + E   + +R   +V T+ GR R    + S  R+     ER
Sbjct: 706  EEARDIIERYFTRYAGIRRYLEDTVERARKTGYVETMFGRRRLMADLNSKNRAVAQAAER 765

Query: 1033 AAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVV 1092
            AAIN P+QG+AAD+   AML + +    + L   +LLQVHDE++ E P    +  KA+  
Sbjct: 766  AAINMPIQGTAADLIKKAMLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALAR 825

Query: 1093 ECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            +CMS        L+V L VD    + W  A
Sbjct: 826  QCMS----SVATLKVPLKVDVGAGKTWADA 851


>gi|77413947|ref|ZP_00790121.1| DNA polymerase I [Streptococcus agalactiae 515]
 gi|77159983|gb|EAO71120.1| DNA polymerase I [Streptococcus agalactiae 515]
          Length = 880

 Score =  182 bits (462), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 112/335 (33%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ   +  ++G++H     + T+TGRLS+  PNLQN P  
Sbjct: 575  VTKILEYRQITKLQSTYIIGLQDYIL--EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    N+++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     ++   ++RR AK +NF I YG +  GL+ + 
Sbjct: 692  VF-----------------GIEKP-----ENVTPNDRRNAKAVNFGIVYGISDFGLSHNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +  + AK+ +D ++     +  + E   +E++   +V TL  R R  P I S   + R 
Sbjct: 730  GIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQ 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +         K+LLQVHDE++LE P+E     K
Sbjct: 790  FAERTAINSPIQGSAADILKIAMINLDRVLYKGGYKSKMLLQVHDEIVLEVPNEEIGAIK 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V + M        +L V L  D    + WY AK
Sbjct: 850  ELVTKTMESAI----SLSVPLIADENAGETWYEAK 880


>gi|421490249|ref|ZP_15937623.1| DNA-directed DNA polymerase [Streptococcus anginosus SK1138]
 gi|400373654|gb|EJP26582.1| DNA-directed DNA polymerase [Streptococcus anginosus SK1138]
          Length = 881

 Score =  182 bits (462), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 178/347 (51%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L     I   I ++  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 562  AVDVLERLAPTAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRYLQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + +++AF+
Sbjct: 622  SVDPNLQNIPIRLEQGRL-IRKAFVPEWENSVLLSSDYSQIELRVLAHISGDEHLIEAFR 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------GIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVETLFHRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         ++LLQVHDE++
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALIDGNFKTRMLLQVHDEIV 838

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P       K +V + M         L V L  D    + WY AK
Sbjct: 839  LEVPENELTAIKTLVKDIMESAI----ELSVPLKADESAGKTWYEAK 881


>gi|300811971|ref|ZP_07092429.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
            bulgaricus PB2003/044-T3-4]
 gi|300497050|gb|EFK32114.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
            bulgaricus PB2003/044-T3-4]
          Length = 887

 Score =  182 bits (462), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 183/344 (53%), Gaps = 33/344 (9%)

Query: 784  EAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRP 842
            + +E    +S + E   I  + S ++  L    +  ++GR+H   L   T TGRLS+  P
Sbjct: 573  QLKEQSPVVSDILEYRQISKIQSTYVKGLLDV-IDERDGRIHTRYLQTLTATGRLSSVDP 631

Query: 843  NLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            NLQN P   ++  +IR+AF+ + P   +   DY Q+ELR+LAH++   +M +AFK G D 
Sbjct: 632  NLQNIPTRTEEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDI 691

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TAM ++ H+ +  E   +                     +RR+AK +NF I YG + 
Sbjct: 692  HAHTAMKIF-HLSSVDEVTSL---------------------QRRRAKAVNFGIVYGISD 729

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GL+++  +S ++AK+ +D ++ +   +  + +   K++R   +  T++ R R  P I +
Sbjct: 730  YGLSKNLDISRKQAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIMHRRRYLPDIHA 789

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEG 1079
               + R+  ER AIN+P+QGSAAD+   AM+ + K  +L ELG   K+++QVHDE+I + 
Sbjct: 790  KNFNVRSFAERTAINSPIQGSAADIMKIAMINMQK--KLDELGLKTKMVVQVHDELIFDV 847

Query: 1080 PSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            P++  E  + IV   M         L V L  DA    +WY AK
Sbjct: 848  PADELETIQKIVPSVMQAAV----KLDVPLVADAGWGHDWYEAK 887


>gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
 gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
          Length = 903

 Score =  182 bits (462), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 106/298 (35%), Positives = 161/298 (54%), Gaps = 28/298 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            R+H S N   T TGRLS+  PNLQN P   +   +IR+AFIA PG  L+  DY Q++LR+
Sbjct: 629  RLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPPGTVLLAGDYSQIDLRV 688

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAHL+   ++++AF++  D H+ TA  +                    +  P  + K+  
Sbjct: 689  LAHLSQDPALIEAFQSDQDIHTATAARLL-------------------NVSPSKVTKE-- 727

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
              +RR AK +NF + YG +  GL +  ++S+EEA K +  ++ +   V  +    K+++R
Sbjct: 728  --QRRLAKTVNFGVIYGMSSYGLEQATELSLEEADKFIKAYFEKYPRVAVYFAEIKQQAR 785

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V TLLGR R  P I S  R  R   ER AIN PVQG++AD+   AM+ + +  + +
Sbjct: 786  TQGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKLAMVRLDEKIKEE 845

Query: 1062 ELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            +L  +LLLQVHDE+I E P+        +++E MS    G     + L V+ K   NW
Sbjct: 846  KLKSRLLLQVHDELIFEVPTAELGRMSDLLIETMS----GAVAFEIPLKVELKSGANW 899


>gi|417810605|ref|ZP_12457284.1| DNA polymerase I [Lactobacillus salivarius GJ-24]
 gi|335349401|gb|EGM50901.1| DNA polymerase I [Lactobacillus salivarius GJ-24]
          Length = 892

 Score =  182 bits (462), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 169/309 (54%), Gaps = 28/309 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            VS  +G+ H       T TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  +DY
Sbjct: 610  VSKTDGKAHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDY 669

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++  K+M +AFK G D H+ TAM ++                   D P  
Sbjct: 670  SQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIF-----------------NVDSPD- 711

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                +   + RR+AK +NF I YG +  GL+++  +S ++AK+ +D + +    V  + E
Sbjct: 712  ----EVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYME 767

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               + ++ + +V T+  R R  P IKS   + R+  ER A+N+P+QGSAAD+   AM+ +
Sbjct: 768  KIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSAADIIKVAMINM 827

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
             +  + K L  K+LLQVHDE+I E P+E   + + +V + M         L V L V++K
Sbjct: 828  QEMLKEKNLQAKMLLQVHDELIFEAPTEEIPLLEDMVPKVMDSAV----KLDVPLKVESK 883

Query: 1115 CAQNWYSAK 1123
              Q W+  K
Sbjct: 884  HGQTWFDTK 892


>gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
 gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
          Length = 830

 Score =  182 bits (462), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 175/345 (50%), Gaps = 31/345 (8%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L   +I PL  + V  K  R+H   N   T TGRLS
Sbjct: 515  AVLEALREAHPIVDRILQYRELSKLKGTYIDPLP-ALVHPKTNRLHTRFNQTATATGRLS 573

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G  L+V DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 574  SSDPNLQNIPVRTPLGQRIRRAFVAEEGWRLVVLDYSQIELRVLAHLSGDENLIRVFQEG 633

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV++                         RR AK +NF + YG
Sbjct: 634  QDIHTQTASWMFGVPPEAVDSLM-----------------------RRAAKTINFGVLYG 670

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+ +  +  EEA   ++ ++    +V  W E    E R   +V TL GR R  P 
Sbjct: 671  MSAHRLSGELAIPYEEAVAFIERYFQSYPKVRAWIEKTLAEGRERGYVETLFGRRRYVPD 730

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
            + S  +S R   ER A N PVQG+AAD+   AM+++    RL+ELG ++LLQVHDE++LE
Sbjct: 731  LASRVKSIREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLQELGARMLLQVHDELVLE 788

Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             P E AE         M + +     L+V L V+    ++W SAK
Sbjct: 789  APKEQAEEVAQEAKRTMEEVW----PLKVPLEVEVGIGEDWLSAK 829


>gi|313124192|ref|YP_004034451.1| DNA polymerase i [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280755|gb|ADQ61474.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 887

 Score =  182 bits (462), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 183/344 (53%), Gaps = 33/344 (9%)

Query: 784  EAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRP 842
            + +E    +S + E   I  + S ++  L    +  ++GR+H   L   T TGRLS+  P
Sbjct: 573  QLKEQSPVVSDILEYRQISKIQSTYVKGLLDV-IDERDGRIHTRYLQTLTATGRLSSVDP 631

Query: 843  NLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            NLQN P   ++  +IR+AF+ + P   +   DY Q+ELR+LAH++   +M +AFK G D 
Sbjct: 632  NLQNIPTRTEEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDI 691

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TAM ++ H+ +  E   +                     +RR+AK +NF I YG + 
Sbjct: 692  HAHTAMKIF-HLSSVDEVTSL---------------------QRRRAKAVNFGIVYGISD 729

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GL+++  +S ++AK+ +D ++ +   +  + +   K++R   +  T++ R R  P I +
Sbjct: 730  YGLSKNLDISRKQAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIMHRRRYLPDIHA 789

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEG 1079
               + R+  ER AIN+P+QGSAAD+   AM+ + K  +L ELG   K+++QVHDE+I + 
Sbjct: 790  KNFNVRSFAERTAINSPIQGSAADIMKIAMINMQK--KLDELGLKTKMVVQVHDELIFDV 847

Query: 1080 PSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            P++  E  + IV   M         L V L  DA    +WY AK
Sbjct: 848  PADELETIQKIVPSVMQAAV----KLDVPLVADAGWGHDWYEAK 887


>gi|409349129|ref|ZP_11232674.1| DNA polymerase [Lactobacillus equicursoris CIP 110162]
 gi|407878401|emb|CCK84732.1| DNA polymerase [Lactobacillus equicursoris CIP 110162]
          Length = 887

 Score =  182 bits (462), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 184/344 (53%), Gaps = 33/344 (9%)

Query: 784  EAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRP 842
            + +E    +S + E   I  + S ++  L    +  ++G++H   L   T TGRLS+  P
Sbjct: 573  QLKEKSPVVSDILEYRQIAKIQSTYVKGLLDV-IDPEDGKIHTRYLQTLTATGRLSSVDP 631

Query: 843  NLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            NLQN P   ++  +IR+AF+ + P   +   DY Q+ELR+LAH++   +M +AFK G D 
Sbjct: 632  NLQNIPTRTEEGKQIRKAFVPSTPDGYIYSCDYSQVELRVLAHVSGDANMQEAFKTGYDI 691

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TAM ++ H+ +  E                PL       ERR+AK +NF I YG + 
Sbjct: 692  HAHTAMRIF-HLNSIDEV--------------TPL-------ERRRAKAVNFGIVYGISD 729

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GL+++  +S ++AK+ +  ++++   +  + +   K++R   +  T++ R R  P I +
Sbjct: 730  YGLSKNLGISRKQAKEFIAEYFDQYPGIKAYMDQAVKDAREKGYAETIMHRRRYLPDIHA 789

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEG 1079
               + R+  ER AIN+P+QGSAAD+   AM+ + K  +L ELG   K+++QVHDE+I + 
Sbjct: 790  KNFNVRSFAERTAINSPIQGSAADIMKIAMINMQK--KLDELGLKTKMVVQVHDELIFDV 847

Query: 1080 PSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            P +  E  K IV E M         L V L  D+    +WY AK
Sbjct: 848  PKDELETVKKIVPEVMQSAV----QLDVPLIADSGYGHDWYDAK 887


>gi|329929159|ref|ZP_08282945.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5]
 gi|328936836|gb|EGG33271.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5]
          Length = 886

 Score =  182 bits (462), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 187/351 (53%), Gaps = 34/351 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL-NINTE 833
            ++T+ E  E      D +  + +  ++  L S ++  L    +S   G+VH         
Sbjct: 564  YSTDAEVLEKLAPYHDIVRLILQYRTLAKLQSTYVEGLL-KEISSVTGKVHTYYRQTIAA 622

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSML 892
            TGRLS++ PNLQN P   ++  K+R+ F+ + PG S++ ADY Q+ELR+LAH+++ + + 
Sbjct: 623  TGRLSSQYPNLQNIPIRLEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHISDDERLK 682

Query: 893  DAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLN 952
            +AF    D H++TAM+++    + V++                         RR AK +N
Sbjct: 683  EAFVHDMDIHTKTAMDVFGVGMDEVDSNM-----------------------RRSAKAVN 719

Query: 953  FSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGR 1012
            F I YG +  GL+++  ++ +EA   +D ++   Q V  + +   K+++ D +V TLL R
Sbjct: 720  FGIVYGISDYGLSQNLNITRKEAAAFIDQYFEVFQGVRRYMDVIVKQAKQDGYVKTLLER 779

Query: 1013 ARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVH 1072
             R  P I +   + R+  ER A+NTP+QG+AAD+   AM+ + K    ++L  ++LLQVH
Sbjct: 780  RRYLPEINASNFNLRSFAERTAMNTPIQGTAADIIKLAMVHMDKALHERQLKSRMLLQVH 839

Query: 1073 DEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            DE++ E P +  EV K +V + MS+       L V L  +    +NWY AK
Sbjct: 840  DELVFEVPEDELEVMKELVPDVMSQAL----KLSVPLKSEVSYGENWYEAK 886


>gi|300508400|pdb|3HT3|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus
            Stearothermophilus V713p Mutant Bound To G:dctp
 gi|300508401|pdb|3HT3|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From Bacillus
            Stearothermophilus V713p Mutant Bound To G:dctp
          Length = 579

 Score =  182 bits (462), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 171/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 304  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 363

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 364  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 400

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 401  TPNMRRQAKAVNFGIPYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 460

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 461  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 518

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L   LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 519  KEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 574

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 575  WYDAK 579


>gi|261415194|ref|YP_003248877.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|385790136|ref|YP_005821259.1| DNA-directed DNA polymerase [Fibrobacter succinogenes subsp.
            succinogenes S85]
 gi|261371650|gb|ACX74395.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327893|gb|ADL27094.1| DNA-directed DNA polymerase [Fibrobacter succinogenes subsp.
            succinogenes S85]
          Length = 972

 Score =  182 bits (462), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 174/343 (50%), Gaps = 30/343 (8%)

Query: 782  EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSAR 840
            E   R A   + A+ E   +  + S ++  L  + V+    R+H S +   T TGRLS+R
Sbjct: 657  ELSFRSAHPIVFAVIEYRELKKMQSTYVSVLP-TLVNPDTKRIHTSFIQWGTATGRLSSR 715

Query: 841  RPNLQNQPALEKDRYKIRQAFIAV-PGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
             PNLQN P       +IR AF+   P N ++  DY Q+ELR+LAHL+  +++++++K G 
Sbjct: 716  DPNLQNIPVRSDLGKQIRAAFVPQNPNNVILAVDYSQIELRMLAHLSGDEALIESYKEGI 775

Query: 900  DFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGK 959
            D H+RTA  +     N V                   L+D  A  RR AK++NF + YG 
Sbjct: 776  DIHARTAAAI-----NRVS------------------LEDVTADMRRDAKVVNFGVLYGM 812

Query: 960  TPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAI 1019
            T   L+RD K+ + +AK  +D ++   Q V  + +  K  +  D +V TL GR R    I
Sbjct: 813  TAFRLSRDLKIPMAQAKSFIDGYFEMYQGVQKFIDDTKAAAHRDGYVETLSGRRRYIAGI 872

Query: 1020 KSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEG 1079
             S  R +    ER A+NTPVQGSAAD+   AM+ I K    + L  +++LQVHDE++ E 
Sbjct: 873  DSSDRMESQMAERMAVNTPVQGSAADLIKIAMIRIQKRINDENLPLRMMLQVHDELVFEC 932

Query: 1080 PSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            P +  E   A+V   M     G   L+V L       +NW  A
Sbjct: 933  PKDQVEALSAMVKSEM----EGAMELKVPLVASVGFGKNWLEA 971


>gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 917

 Score =  182 bits (462), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 176/358 (49%), Gaps = 37/358 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  +    L E   +  L S +   LPL    +  + GRVH 
Sbjct: 592  KGAPSTAEEVLA---ELAETYELPQLLMEHRGLAKLKSTYTDKLPLM---IKPQTGRVHT 645

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 646  SYHQAVAATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPCAGYKLVAADYSQIELRIMAHL 705

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +L AF  G D H  TA  ++     AV +                         R
Sbjct: 706  SGDKGLLTAFAEGKDIHKATAAEVFGVALEAVTSDM-----------------------R 742

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GLA+   +   EA+K +DL++     VL + E  ++++    +
Sbjct: 743  RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQADAQGY 802

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKELG 1064
            V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R +++  
Sbjct: 803  VETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDGWIRGIEDQS 862

Query: 1065 WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
             ++L+QVHDE++ E   E  E   AI+ E MS        L V L V+A    NW  A
Sbjct: 863  IRMLMQVHDELVFEIREEKLEEYIAIIKEKMS----AAAELDVPLVVEAGTGDNWDQA 916



 Score = 49.3 bits (116), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 125/304 (41%), Gaps = 66/304 (21%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA--DFGNGKSCIWVDLLDGGGRDLLN 426
           + A DTE   +D  +   V     + F+I  G  A   FG+      V L +     +L 
Sbjct: 339 LFAFDTETTSLDYMEARVVG----VSFAIEPGKAAYVPFGHDYLGAPVQLTEAV---VLG 391

Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
           +  P  EDP+  KV  N  +D +VL N+G+++ G   DTM  + + +S   T   + +++
Sbjct: 392 KLKPLLEDPARLKVGQNLKYDRNVLLNHGIELQGIAYDTMLESYVLNS---TASRHDMDS 448

Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
           L   R+ ++ +  ++++   KG      + +++   I                       
Sbjct: 449 LA--RRYLNAETISFEEIAGKG------VKQLTFNQI----------------------- 477

Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPF 605
               E E    Y+A D+  TL+L+++L        W KL  +P     +   + E   P 
Sbjct: 478 ----ELEQAAPYAAEDADITLRLHQAL--------WGKLSAEP----GLAKVFSEIELPL 521

Query: 606 GEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLR 665
             +L +ME  G  ++ + L +  +    E E  +    K A  H    +  N+ S  QL 
Sbjct: 522 LPVLARMERLGTTIEPKLLHQQSQ----EIEVRLAELEKQA--HELAGQEFNLSSPKQLG 575

Query: 666 QLLF 669
           ++LF
Sbjct: 576 EILF 579


>gi|414161038|ref|ZP_11417301.1| DNA polymerase I [Staphylococcus simulans ACS-120-V-Sch1]
 gi|410876717|gb|EKS24615.1| DNA polymerase I [Staphylococcus simulans ACS-120-V-Sch1]
          Length = 876

 Score =  182 bits (462), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 116/334 (34%), Positives = 170/334 (50%), Gaps = 31/334 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPAL 850
            I  + E   +  L S ++  LQ   V   + R+H   N    +TGRLS+  PNLQN P  
Sbjct: 572  IEDILEYRQLSKLQSTYVEGLQ--KVIQDDNRIHTHFNQTLAQTGRLSSVDPNLQNIPVR 629

Query: 851  EKDRYKIRQAF-IAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AF  A   N ++ ADY Q+ELR+LAH+   +SM++AF+ G D H+ TAM +
Sbjct: 630  LEEGRRIRKAFKPAEVDNVILSADYSQIELRVLAHITQDESMMNAFREGRDIHTATAMKV 689

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +      VE  +V                D     RR+AK +NF I YG +  GL++   
Sbjct: 690  F-----GVEADEV----------------DGLM--RRQAKAVNFGIVYGISDYGLSQSLG 726

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            ++ + AKK +D + +    V  +     K+++   +V TLL R R  P I S   +QR+ 
Sbjct: 727  ITRKAAKKFIDDYLDSFPGVKQYMSDIVKDAKAKGYVETLLHRRRYIPDITSRNFNQRSF 786

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER A+NTP+QGSAAD+   AM+   K  +  +    LLLQVHDE+I E P +  E    
Sbjct: 787  AERTAMNTPIQGSAADIIKLAMVNYDKAVKETDFNAHLLLQVHDELIFELPKDEVEAFSE 846

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             + + M         L+V L VD      WY AK
Sbjct: 847  FIEDIMDNAI----ELKVPLQVDTNYGPTWYDAK 876


>gi|417004515|ref|ZP_11943248.1| DNA polymerase I [Streptococcus agalactiae FSL S3-026]
 gi|341578314|gb|EGS28711.1| DNA polymerase I [Streptococcus agalactiae FSL S3-026]
          Length = 880

 Score =  182 bits (462), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 183/337 (54%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ   +  ++G++H     + T+TGRLS+  PNLQN P  
Sbjct: 575  VTKILEYRQITKLQSTYIIGLQDYIL--EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    N+++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     ++   ++RR AK +NF I YG +  GL+ + 
Sbjct: 692  VF-----------------GIEKP-----ENVTPNDRRNAKAVNFGIVYGISDFGLSHNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +  + AK+ +D ++     +  + E   +E++   +V TL  R R  P I S   + R 
Sbjct: 730  GIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQ 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + +   L + G+  K+LLQVHDE++LE P+E    
Sbjct: 790  FAERTAINSPIQGSAADILKIAMINLDR--VLDKGGYKSKMLLQVHDEIVLEVPNEEIGA 847

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             K +V + M        +L V L  D    + WY AK
Sbjct: 848  IKELVTKTMESAI----SLSVPLIADENAGETWYEAK 880


>gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202]
 gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202]
          Length = 950

 Score =  182 bits (462), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 126/357 (35%), Positives = 179/357 (50%), Gaps = 36/357 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   E+ A         L E   +  L S +   LPL    ++ K GRVH 
Sbjct: 626  KGAASTNEEVL--EELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLM---INAKTGRVHT 680

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 681  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQIELRIMAHL 740

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            AN K ML AF  G D H  TA  ++         G  L E  GE              +R
Sbjct: 741  ANDKGMLKAFAEGKDIHRSTASEIF---------GVPLDEVTGE--------------QR 777

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +S  +AK+ ++ ++N    VL +    K ++    +
Sbjct: 778  RNAKAINFGLIYGMSEFGLSNQLGISRADAKQYMEAYFNRYPNVLQFMTDIKAKAAEKGY 837

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
            V TLLGR    P IKS    +R   ER AIN P+QG+AAD+   AM+ I +  +  +   
Sbjct: 838  VETLLGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKIAMIGIDRVIQHSD-EI 896

Query: 1066 KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            K+++QVHDE++ E   +  E   A++   M K       L V L  +     NW  A
Sbjct: 897  KMIMQVHDELVFEVKEDKVEHYSAVIKAEMEKAI----QLNVPLIAEVGVGDNWDEA 949


>gi|422857200|ref|ZP_16903850.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1057]
 gi|327463731|gb|EGF10047.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1057]
          Length = 880

 Score =  182 bits (462), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 178/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  +  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  +  ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQVHDE++LE P++     +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  QLVKETMEAAI----KLAVPLVADENAGQTWYEAK 880


>gi|421498484|ref|ZP_15945589.1| polA [Aeromonas media WS]
 gi|407182528|gb|EKE56480.1| polA [Aeromonas media WS]
          Length = 918

 Score =  182 bits (462), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 174/358 (48%), Gaps = 37/358 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  D    L E   +  L S +   LPL    +  + GRVH 
Sbjct: 593  KGAPSTAEEVLA---ELAETYDLPRLLMEHRGLAKLKSTYTDKLPLM---IKPQTGRVHT 646

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 647  SYHQAVAATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHL 706

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  + +L AF  G D H  TA  ++     AV T                         R
Sbjct: 707  SGDQGLLTAFAEGKDIHKATAAEVFGVALEAVTTDM-----------------------R 743

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GLA+   +   EA+K +DL++     VL + E  ++++    +
Sbjct: 744  RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQAEAQGY 803

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKELG 1064
            V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R + +  
Sbjct: 804  VETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMIAVDGWIRGITDGS 863

Query: 1065 WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
              +L+QVHDE++ E   E  E   A++ E MS        L V L V+A    NW  A
Sbjct: 864  IHMLMQVHDELVFEIREEKLEEYIALIKEKMS----AAAELHVPLVVEAGTGDNWDQA 917



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 123/308 (39%), Gaps = 74/308 (24%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA--DFGNGKSCIWVDLLDGGGRDLLN 426
           + A DTE   +D  +   V     + F+I  G  A   FG+        L +   + +L 
Sbjct: 340 LFAFDTETTSLDYMEARVVG----VSFAIEPGKAAYVPFGHDYLGAPTQLTE---QQVLG 392

Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
           +  P  EDP+  KV  N  +D +VL+N+G+ + G   DTM  + + +S+           
Sbjct: 393 KLKPLLEDPARLKVGQNLKYDRNVLQNHGIDLQGIAFDTMLESYVLNST----------- 441

Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
                        A + DM    +    +  IS +DI G+   +   +  ++   AP   
Sbjct: 442 -------------ASRHDMDSLASKYLGVETISFEDIAGKGAKQLTFNQIELEQAAP--- 485

Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFG 606
                      Y+A D+  TL+L+++L  +L ++             +   + E   P  
Sbjct: 486 -----------YAAEDADITLRLHQTLWGELSKLP-----------ELAKVFTEIELPLL 523

Query: 607 EILVKMETEGMLVDREYL----SEIE-KVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            +L +ME  G  +D + L     EIE ++A  E++A           H    +  N+ S 
Sbjct: 524 PVLARMELLGTTIDPKLLHQQSQEIEVRLAELERQA-----------HELAGQEFNLSSP 572

Query: 662 TQLRQLLF 669
            QL ++LF
Sbjct: 573 KQLGEILF 580


>gi|408411095|ref|ZP_11182278.1| DNA polymerase [Lactobacillus sp. 66c]
 gi|407874758|emb|CCK84084.1| DNA polymerase [Lactobacillus sp. 66c]
          Length = 887

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 185/344 (53%), Gaps = 33/344 (9%)

Query: 784  EAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRP 842
            + +E    +S + E   I  + S ++  L    ++ ++G++H   L   T TGRLS+  P
Sbjct: 573  QLKEKSPVVSDILEYRQIAKIQSTYVKGLLDV-INPEDGKIHTRYLQTLTATGRLSSVDP 631

Query: 843  NLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            NLQN P   ++  +IR+AF+ + P   +   DY Q+ELR+LAH++   +M +AFK G D 
Sbjct: 632  NLQNIPTRTEEGKQIRKAFVPSTPDGYIYSCDYSQVELRVLAHVSGDANMQEAFKTGYDI 691

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TAM ++ H+ +  E                PL       ERR+AK +NF I YG + 
Sbjct: 692  HAHTAMRIF-HLNSIDEV--------------TPL-------ERRRAKAVNFGIVYGISD 729

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GL+++  +S ++AK+ +  ++++   +  + +   K++R   +  T++ R R  P I +
Sbjct: 730  YGLSKNLGISRKQAKEFIAEYFDQYPGIKAYMDQAVKDAREKGYAETIMHRRRYLPDIHA 789

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEG 1079
               + R+  ER AIN+P+QGSAAD+   AM+ + K  +L ELG   K+++QVHDE+I + 
Sbjct: 790  KNYNVRSFAERTAINSPIQGSAADIMKIAMINMQK--KLDELGLKTKMVVQVHDELIFDV 847

Query: 1080 PSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            P +  E  K IV E M         L V L  D+    +WY AK
Sbjct: 848  PKDELETIKKIVPEVMQSAV----QLDVPLIADSGYGHDWYDAK 887


>gi|417940414|ref|ZP_12583702.1| DNA-directed DNA polymerase [Streptococcus oralis SK313]
 gi|343389295|gb|EGV01880.1| DNA-directed DNA polymerase [Streptococcus oralis SK313]
          Length = 852

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/349 (34%), Positives = 184/349 (52%), Gaps = 42/349 (12%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 533  AVDVLERLAPIVPIVKKILDYRQIAKIQSTYVVGLQDWILDDGKIHTRYVQDLTQTGRLS 592

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 593  SVDPNLQNIPVRLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 651

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P     +D   ++RR AK +NF + 
Sbjct: 652  EGADIHTSTAMRVF-----------------GIERP-----EDVTPNDRRNAKAVNFGVV 689

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S ++AK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 690  YGISDFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFKRRREL 749

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDE 1074
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K   L E G+  K+LLQVHDE
Sbjct: 750  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDK--ALVEGGYQTKMLLQVHDE 807

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            ++LE P    E  K +V + M +       L V L  D      WY AK
Sbjct: 808  IVLEVPKSELEAVKTLVKQTMEEAI----QLSVPLIADENEGATWYEAK 852


>gi|349611545|ref|ZP_08890780.1| hypothetical protein HMPREF1027_00207 [Lactobacillus sp. 7_1_47FAA]
 gi|348608638|gb|EGY58618.1| hypothetical protein HMPREF1027_00207 [Lactobacillus sp. 7_1_47FAA]
          Length = 883

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 170/305 (55%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
            +G++H   L   T TGRLS+  PNLQN P   ++  +IR+AF+    +S L   DY Q+E
Sbjct: 605  DGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVE 664

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+++ K+ML+AFK G D H+ TAM ++  + N  E                PL+ 
Sbjct: 665  LRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFG-LSNLDEV--------------TPLM- 708

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GLA++  +S +EA+  ++ ++ +  ++  + +A  K
Sbjct: 709  ------RRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVK 762

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R   +  T++ R R  P I +   + R+  ER AIN+P+QGSAAD+   AM+++    
Sbjct: 763  LAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSEL 822

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              ++L  K++LQ+HDE++ + PSE  ++ K +V E M +       L V L  DA    N
Sbjct: 823  ERRKLKTKMILQIHDELLFDVPSEELDLIKTLVPEIMQQA----AQLDVPLIADANWGHN 878

Query: 1119 WYSAK 1123
            WY  K
Sbjct: 879  WYEVK 883


>gi|197106849|ref|YP_002132226.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
 gi|196480269|gb|ACG79797.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
          Length = 944

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/310 (36%), Positives = 166/310 (53%), Gaps = 26/310 (8%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + +S + GRVH S ++ +T TGRLS+  PNL N P   ++  KIR+AF+A PG  LI AD
Sbjct: 658  AAISEQTGRVHTSFSLASTTTGRLSSSDPNLMNIPIRTEEGRKIRRAFVAEPGKVLISAD 717

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+ +   +  AF+ G D H+ TA  M+                       
Sbjct: 718  YSQIELRLLAHIGDIPQLKRAFREGLDIHAMTASEMFG---------------------- 755

Query: 934  VPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
            VP+  +   SE RR+AK +NF I YG +  GLA    +  +EA   +  ++     +  +
Sbjct: 756  VPV--EGMPSETRRRAKAINFGIIYGISAFGLANQLGIPQDEAGAYIKTYFERFPGIRAY 813

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             +  K+ +R    VHT+ GR    PA+KS ++++R   +RAAIN P+QGSAADV   AM+
Sbjct: 814  MDRTKQAARSQGFVHTIFGRKVNIPAVKSKSQAERAFGDRAAINAPIQGSAADVMRRAMI 873

Query: 1053 EISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
             +    + + L  ++LLQVHDE++ E P   AE    I    M K       + V L V+
Sbjct: 874  RMPGALKAEGLTARMLLQVHDELVFEAPEAEAEAVIRIAKAVMEKAAEPAVAISVPLVVE 933

Query: 1113 AKCAQNWYSA 1122
            A+ A NW  A
Sbjct: 934  ARAAPNWDDA 943


>gi|94991667|ref|YP_599766.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
 gi|94545175|gb|ABF35222.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
          Length = 806

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 183/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 487  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQDLTQTGRLS 546

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 547  SVDPNLQNIPIRLEQGRL-IRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFN 605

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK       D  A++RR AK +NF I 
Sbjct: 606  EGADIHTSTAMRVF-----------------GIDKAA-----DVTANDRRNAKAVNFGIV 643

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ +++K  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 644  YGISDFGLSNNLGITRKQSKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL 703

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  +      K+LLQVHDE++
Sbjct: 704  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIV 763

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P++     K +V + M        +L V L VD    Q+WY AK
Sbjct: 764  LEVPNDELTAIKKLVKDTMEAAV----DLAVPLCVDESTGQSWYEAK 806


>gi|427406333|ref|ZP_18896538.1| DNA polymerase I [Selenomonas sp. F0473]
 gi|425709174|gb|EKU72213.1| DNA polymerase I [Selenomonas sp. F0473]
          Length = 890

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/314 (36%), Positives = 173/314 (55%), Gaps = 33/314 (10%)

Query: 814  GSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG---NSL 869
            G+ +  + GRVH S N + T TGRLS+  PNLQN P   ++   +R  F   PG   ++L
Sbjct: 606  GALIRPETGRVHTSFNQMVTATGRLSSSDPNLQNIPVRTEEGRAVRALF--EPGEGYDAL 663

Query: 870  IVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGE 929
            + ADY Q+ELRILAH++  ++++DAF  G D H+RTA              +VL    G 
Sbjct: 664  LSADYSQIELRILAHMSGDETLIDAFLHGQDIHARTA-------------SEVL----GV 706

Query: 930  DKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEV 989
                   L +  +++RR AK +NF I YG +  GL++D  +S +EA   ++ ++   + V
Sbjct: 707  S------LAEVTSAQRRSAKAVNFGIVYGLSDYGLSQDLGISRKEAASYIERYFERYRGV 760

Query: 990  LTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMC 1049
              + +    ++  D +V TL GR R  PAI S    QR++ ER A+NTP+QG+AAD+   
Sbjct: 761  RAFLDKVVADAHRDGYVTTLYGRRRALPAINSRNFMQRSNAERMAMNTPIQGTAADLIKI 820

Query: 1050 AMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDL 1109
            AM+   +  R  +L  ++LLQVHDE++LE   +      +++ E MS    G   L V L
Sbjct: 821  AMIRADEALRAAKLKSRILLQVHDELVLEVVGDEIPQVTSLLQEAMS----GAAALSVPL 876

Query: 1110 SVDAKCAQNWYSAK 1123
            +VD    +NW  AK
Sbjct: 877  AVDVHTGKNWAEAK 890


>gi|261408692|ref|YP_003244933.1| DNA polymerase I [Paenibacillus sp. Y412MC10]
 gi|261285155|gb|ACX67126.1| DNA polymerase I [Paenibacillus sp. Y412MC10]
          Length = 886

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 187/351 (53%), Gaps = 34/351 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL-NINTE 833
            ++T+ E  E      D +  + +  ++  L S ++  L    +S   G+VH         
Sbjct: 564  YSTDAEVLEKLAPYHDIVRLILQYRTLAKLQSTYVEGLL-KEISSVTGKVHTYYRQTIAA 622

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSML 892
            TGRLS++ PNLQN P   ++  K+R+ F+ + PG S++ ADY Q+ELR+LAH+++ + + 
Sbjct: 623  TGRLSSQYPNLQNIPIRLEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHISDDERLK 682

Query: 893  DAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLN 952
            +AF    D H++TAM+++    + V++                         RR AK +N
Sbjct: 683  EAFVHDMDIHTKTAMDVFGVGMDEVDSNM-----------------------RRSAKAVN 719

Query: 953  FSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGR 1012
            F I YG +  GL+++  ++ +EA   +D ++   Q V  + +   K+++ D +V TLL R
Sbjct: 720  FGIVYGISDYGLSQNLNITRKEAAAFIDQYFEVFQGVRRYMDVIVKQAKQDGYVKTLLER 779

Query: 1013 ARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVH 1072
             R  P I +   + R+  ER A+NTP+QG+AAD+   AM+ + K    ++L  ++LLQVH
Sbjct: 780  RRYLPEINASNFNLRSFAERTAMNTPIQGTAADIIKLAMVHMDKALHERQLKSRMLLQVH 839

Query: 1073 DEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            DE++ E P +  EV K +V + MS+       L V L  +    +NWY AK
Sbjct: 840  DELVFEVPEDELEVMKELVPDVMSQAL----KLSVPLKSEVSYGENWYEAK 886


>gi|157149813|ref|YP_001449466.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074607|gb|ABV09290.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1]
          Length = 880

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 178/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  +  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  +  ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQVHDE++LE P++     +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  QLVKETMEAAI----ELAVPLVADENAGQTWYEAK 880


>gi|125716978|ref|YP_001034111.1| DNA polymerase I [Streptococcus sanguinis SK36]
 gi|125496895|gb|ABN43561.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains, putative
            [Streptococcus sanguinis SK36]
          Length = 880

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 178/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  +  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  +  ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQVHDE++LE P++     +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  KLVKETMETAI----ELAVPLVADENAGQTWYEAK 880


>gi|71909973|ref|YP_281523.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94987792|ref|YP_595893.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
 gi|410679853|ref|YP_006932255.1| DNA polymerase I family protein [Streptococcus pyogenes A20]
 gi|417856024|ref|ZP_12501083.1| DNA polymerase I [Streptococcus pyogenes HKU QMH11M0907901]
 gi|71852755|gb|AAZ50778.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94541300|gb|ABF31349.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
 gi|387932979|gb|EIK41092.1| DNA polymerase I [Streptococcus pyogenes HKU QMH11M0907901]
 gi|395453200|dbj|BAM29539.1| DNA polymerase I [Streptococcus pyogenes M1 476]
 gi|409692442|gb|AFV37302.1| DNA polymerase I family protein [Streptococcus pyogenes A20]
          Length = 880

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 183/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 621  SVDPNLQNIPIRLEQGRL-IRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFN 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK       D  A++RR AK +NF I 
Sbjct: 680  EGADIHTSTAMRVF-----------------GIDKAA-----DVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ +++K  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGITRKQSKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  +      K+LLQVHDE++
Sbjct: 778  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIV 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P++     K +V + M        +L V L VD    Q+WY AK
Sbjct: 838  LEVPNDELTAIKKLVKDTMEAAV----DLAVPLCVDESTGQSWYEAK 880


>gi|227824019|ref|YP_002827992.1| DNA polymerase I [Sinorhizobium fredii NGR234]
 gi|227343021|gb|ACP27239.1| DNA polymerase I [Sinorhizobium fredii NGR234]
          Length = 1040

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/299 (36%), Positives = 154/299 (51%), Gaps = 26/299 (8%)

Query: 823  RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH    +  T TGRLS+  PNLQN P    +  +IR AFIA PG+ L+ ADY Q+ELR+
Sbjct: 762  RVHTGYALAATTTGRLSSSEPNLQNIPVRTAEGRRIRTAFIATPGHKLVSADYSQIELRV 821

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+                       VP+  +  
Sbjct: 822  LAHVADIPQLRQAFADGVDIHAMTASEMFG----------------------VPV--EGM 857

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E  K  +
Sbjct: 858  PSEIRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFA 917

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R   +V T+ GR   +P I+S   S R   ERA+IN P+QGSAAD+   AM+++      
Sbjct: 918  REHGYVETIFGRRAHYPDIRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALDE 977

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             +L  ++LLQVHDE+I E      E    ++V  M        ++RV L VDA+ AQNW
Sbjct: 978  AKLAARMLLQVHDELIFEVEEGEIERTLPVIVSVMENAAMPALDMRVPLKVDARAAQNW 1036


>gi|421730686|ref|ZP_16169812.1| DNA polymerase I [Bacillus amyloliquefaciens subsp. plantarum M27]
 gi|407074840|gb|EKE47827.1| DNA polymerase I [Bacillus amyloliquefaciens subsp. plantarum M27]
          Length = 879

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 179/336 (53%), Gaps = 30/336 (8%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQP 848
            D ++ + +   I  L S +I  L      G + +VH   N   T+TGRLS+  PNLQN P
Sbjct: 572  DIVAYILQYRQIGKLQSTYIEGLLKVTRKGSH-KVHTRFNQALTQTGRLSSTDPNLQNIP 630

Query: 849  ALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
               ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF    D H++TAM
Sbjct: 631  IRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAM 690

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
            +++ H+    E  Q +                     RR+AK +NF I YG +  GL+++
Sbjct: 691  DVF-HVSED-EVTQAM---------------------RRQAKAVNFGIVYGISDYGLSQN 727

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ +EA   +D +      V  + E   +E++   +V TL+ R R  P + S   + R
Sbjct: 728  LGITRKEAGAFIDRYLESFPGVKAYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNLR 787

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVA 1087
            +  ER A+NTP+QGSAAD+   AM++++   + K+L  +LLLQVHDE+I E P E  E+ 
Sbjct: 788  SFAERTAMNTPIQGSAADIIKKAMIDMAAELKEKKLKARLLLQVHDELIFEAPKEEIEIL 847

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + +V E M         L V L  D     +WY AK
Sbjct: 848  EKLVPEVMEHAL----ALDVPLKADYASGPSWYDAK 879


>gi|386394626|ref|ZP_10079407.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase
            domains [Desulfovibrio sp. U5L]
 gi|385735504|gb|EIG55702.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase
            domains [Desulfovibrio sp. U5L]
          Length = 893

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/348 (33%), Positives = 173/348 (49%), Gaps = 34/348 (9%)

Query: 780  ATEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
            +T QEA E        +  + E   ++ L S ++ PL    ++   GR+H + N + T T
Sbjct: 574  STSQEALERLAGENPLVDRILEFRKLEKLRSTYLDPL--PRLADAAGRIHTTFNNLATAT 631

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+  PNLQN P       ++R+ F+A PG  L+ ADY Q+ELR+LAHL+   ++L A
Sbjct: 632  GRLSSSNPNLQNIPIRGTLGRRMRECFVAAPGKKLVAADYSQIELRVLAHLSGEPALLAA 691

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F+ G D H+RTA  ++                   DK    +  D    ERR+AK +NF 
Sbjct: 692  FEQGADIHARTAAILF-------------------DKAEADIRPD----ERRQAKTINFG 728

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            + YG  P  L+RD  + ++ AK  ++ ++     + T+ +     ++    V TL GR R
Sbjct: 729  LLYGMGPQKLSRDLGIKLDAAKAFIEKYFERLSGLSTFYQGIVDTAKEQGFVTTLAGRRR 788

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDE 1074
              P I S      +   R AINT VQG AAD+   AML    +  L  LG  ++LQVHDE
Sbjct: 789  LLPEIHSANSQLASQARRQAINTVVQGGAADIIKMAMLAAHGDPELAGLGAAMVLQVHDE 848

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            ++LE P  +A+ A     E +S    G   L V L+VD      W  A
Sbjct: 849  LLLETPEAAAQAAG----ERLSALMCGVVALAVPLAVDWGAGHTWGQA 892


>gi|238927513|ref|ZP_04659273.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
 gi|238884795|gb|EEQ48433.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
          Length = 874

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/315 (36%), Positives = 167/315 (53%), Gaps = 35/315 (11%)

Query: 814  GSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG---NSL 869
            G+ +    GRVH S N   T TGRLS+  PNLQN P   ++   +R  F   PG   ++L
Sbjct: 590  GALIRPATGRVHTSFNQTVTATGRLSSSDPNLQNIPVRTEEGRAVRALF--TPGEGYDAL 647

Query: 870  IVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGE 929
            + ADY Q+ELRILAH++   +++DAF+ G D H+RTA  ++                   
Sbjct: 648  LSADYSQIELRILAHMSGDATLIDAFRHGQDIHARTAAEVFG------------------ 689

Query: 930  DKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                VPL  DA   E RR+AK +NF I YG +  GLARD  +   EA   +D ++     
Sbjct: 690  ----VPL--DAVTPEQRRRAKAVNFGIVYGLSDFGLARDLGIGRREAGGYIDRYFERYHG 743

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            V T+ +    ++  + +V TL GR R  PA+ S    QR+  ER A+NTP+QG+AAD+  
Sbjct: 744  VRTFLDKIVADAHTNGYVTTLYGRRRALPALASRNYMQRSFAERMAMNTPIQGTAADLIK 803

Query: 1049 CAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVD 1108
             AM+      +  ++  ++LLQVHDE+++E  +E  E    ++   MS    G   L V 
Sbjct: 804  IAMVRAYDALQAADVKSRILLQVHDELVMEVTAEETETVTELLRTAMS----GAAELAVP 859

Query: 1109 LSVDAKCAQNWYSAK 1123
            L+VD    +NW  AK
Sbjct: 860  LAVDVHVGKNWAEAK 874


>gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7]
 gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7]
          Length = 922

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/316 (37%), Positives = 163/316 (51%), Gaps = 34/316 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P   ++  +IRQAFIA  G  
Sbjct: 637  LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRK 693

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++                 G
Sbjct: 694  ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVF-----------------G 736

Query: 929  EDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
             D        D+  SE RR+AK +NF + YG +  GLAR   +   EA+  +D ++    
Sbjct: 737  TD-------FDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYIDTYFARYP 789

Query: 988  EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
             VL + E  +  +    +V TL GR    P I+     +R   ERAAIN P+QG+AAD+ 
Sbjct: 790  GVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQGTAADII 849

Query: 1048 MCAMLEISKNARLKELG-WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLR 1106
              AM+ I+   +    G   +++QVHDE++ E  ++ AE  K  V E M+K      NL 
Sbjct: 850  KKAMISIADWIKTDTQGEITMIMQVHDELVFEVDADKAETLKLKVCELMAK----AANLD 905

Query: 1107 VDLSVDAKCAQNWYSA 1122
            V+L  +A    NW  A
Sbjct: 906  VELLAEAGIGDNWDQA 921



 Score = 42.7 bits (99), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
           L +  P  ED  +KKV  N  +D  VL N G+++ G   DTM  + +++S  SR    G 
Sbjct: 395 LEKLRPILEDAKLKKVGQNLKYDISVLANAGIQLKGVVFDTMLESYVFNSVASRHDMDGL 454

Query: 483 SLEALTGDRKVMSED 497
           +L+ L G + +  ED
Sbjct: 455 ALKYL-GHKNIAFED 468


>gi|386390037|ref|ZP_10074834.1| DNA-directed DNA polymerase [Haemophilus paraphrohaemolyticus HK411]
 gi|385694079|gb|EIG24705.1| DNA-directed DNA polymerase [Haemophilus paraphrohaemolyticus HK411]
          Length = 950

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 176/357 (49%), Gaps = 36/357 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   E+ A+E       L E   +  L S +   LP     ++ K GRVH 
Sbjct: 626  KGAPSTNEEVL--EELAQEGHIVPKLLIEHRGLSKLKSTYTDKLP---QMINPKTGRVHT 680

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 681  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYKVVAADYSQIELRIMAHL 740

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            AN   M  AF  G D H  TA  ++                         LL++    +R
Sbjct: 741  ANDAGMQKAFAEGKDIHRSTAAEIFG-----------------------VLLEEVTNEQR 777

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +S +EA+  +D ++N    VL +    K ++    +
Sbjct: 778  RNAKAINFGLIYGMSEFGLSNQLGISRQEARSYMDAYFNRYPNVLQFMTDIKAKAAEQGY 837

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
            V TLLGR    P IKS    +R   ER AIN P+QG+AAD+   AM+ I K     +   
Sbjct: 838  VETLLGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKMI-FGDKNI 896

Query: 1066 KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            K+++QVHDE++ E  SE  +    ++   M K       L V L  D     NW  A
Sbjct: 897  KMIMQVHDELVFEVKSEKVDHYSQLIKAEMEKAI----KLHVPLIADVGVGDNWDEA 949



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 156/407 (38%), Gaps = 105/407 (25%)

Query: 303 SNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLT 362
           + ++ P N AA      +   + E+  K+EI RSK    Y  V      + A+   W+  
Sbjct: 302 TKERMPNNYAA-----TQAVEKTESFAKVEIDRSK----YETVR-----TEAQLEKWIEK 347

Query: 363 NKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGP----------EADFGNGKSCI 412
            + + LV A DTE   +DV     V     I F + SG           E     G+  +
Sbjct: 348 IQAEKLV-AVDTETNALDVMSAELVG----ISFGLASGEACYIPLTHKEEVSEQAGQGDL 402

Query: 413 WVDLLDGGGRDL----------LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
           + +     G +L          L    P  ED  IKK+  N  +D  V  N+G++V G  
Sbjct: 403 FAENTANVGYELVKNQINLTACLAALKPILEDKQIKKIGQNIKYDLTVFANHGIEVQGVE 462

Query: 463 ADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKD 522
            DTM    L   ++ + G ++++ L    + +     A+++   KG     F  KI +  
Sbjct: 463 FDTM----LESYTQNSTGRHNMDDLA--ERYLGHKTIAFEEIAGKGKNQLTF-DKIVL-- 513

Query: 523 IFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW 582
                                         ++   Y+A D+  T+KL+++L  +L     
Sbjct: 514 ------------------------------DVASEYAAEDADVTMKLHQTLFPEL----- 538

Query: 583 KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAA 638
               +  P  ++   + E   P   +L  +E  G+L+D + L     EIE+   AE EA 
Sbjct: 539 ----EKTP--TLLKLFNEIEMPLVRVLSHIERNGVLIDPQKLLAQSQEIEQ-RLAEVEAE 591

Query: 639 VNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSKDDSESLP 683
           V         H    +  N+ S  QL+++LF   G P  K   +  P
Sbjct: 592 V---------HQVAGQEFNLASTKQLQEILFEKLGLPVKKKTPKGAP 629


>gi|422852754|ref|ZP_16899418.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK160]
 gi|422856358|ref|ZP_16903015.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1]
 gi|422863742|ref|ZP_16910372.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK408]
 gi|325697968|gb|EGD39851.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK160]
 gi|327458424|gb|EGF04780.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1]
 gi|327471749|gb|EGF17190.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK408]
          Length = 880

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 178/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  +  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  +  ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQVHDE++LE P++     +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  QLVKETMEAAI----ELAVPLVADENAGQTWYEAK 880


>gi|411011289|ref|ZP_11387618.1| DNA polymerase I [Aeromonas aquariorum AAK1]
          Length = 916

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/359 (35%), Positives = 178/359 (49%), Gaps = 39/359 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  +    L E   +  L S +   LPL    +  + GRVH 
Sbjct: 591  KGAPSTAEEVLA---ELAETYELPRLLMEHRGLAKLKSTYTDKLPLM---IKPQTGRVHT 644

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 645  SYHQAVAATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPCTGYKLVAADYSQIELRIMAHL 704

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASE- 944
            +  K +L AF  G D H  TA  ++      VE                    DA  S+ 
Sbjct: 705  SGDKGLLTAFAEGKDIHKATAAEVF-----GVEL-------------------DAVTSDM 740

Query: 945  RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDN 1004
            RR AK +NF + YG +  GLA+   +   EA+K +DL++     VL + E  ++++    
Sbjct: 741  RRSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQAEAQG 800

Query: 1005 HVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKEL 1063
            +V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R +++ 
Sbjct: 801  YVETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDGWIRGIEDQ 860

Query: 1064 GWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
              ++L+QVHDE++ E   E  E    I+ E MS        L V L V+A    NW  A
Sbjct: 861  SIRMLMQVHDELVFEIREEKLEEYIGIIKEKMS----AAAELHVPLVVEAGTGDNWDQA 915



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 118/303 (38%), Gaps = 64/303 (21%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA--DFGNGKSCIWVDLLDGGGRDLLN 426
           + A DTE   +D  +   V     + F+I  G  A   FG+      V L +     +L 
Sbjct: 338 LFAFDTETTSLDYMEARIVG----VSFAIEPGKAAYVPFGHDYLGAPVQLTEA---VVLG 390

Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
           +  P  EDP+  KV  N  +D +VL N+G+++ G   DTM  + + +S            
Sbjct: 391 KLKPLLEDPARLKVGQNLKYDRNVLLNHGIELQGIAYDTMLESYVLNS------------ 438

Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
            T  R  M    + Y    +           IS +DI G+   +   +  ++   AP   
Sbjct: 439 -TASRHDMDSLARRYLNAET-----------ISFEDIAGKGVKQLTFNQIELEQAAP--- 483

Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFG 606
                      Y+A D+  TL+L+++L        W   GK      +   + E   P  
Sbjct: 484 -----------YAAEDADITLRLHQAL--------W---GKLAAEPGLAKVFSEIELPLL 521

Query: 607 EILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQ 666
            +L +ME  G  ++ + L +  +    E E  +    K A  H    +  N+ S  QL +
Sbjct: 522 PVLARMERLGTTIEPQLLHQQSQ----EIEVRLAELEKQA--HELAGQEFNLSSPKQLGE 575

Query: 667 LLF 669
           +LF
Sbjct: 576 ILF 578


>gi|422882911|ref|ZP_16929360.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK49]
 gi|332364060|gb|EGJ41837.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK49]
          Length = 880

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 178/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  +  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  +  ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQVHDE++LE P++     +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  QLVKETMEAAI----ELAVPLVADENAGQTWYEAK 880


>gi|353251721|pdb|3PV8|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
            Fragment Bound To Dna And Ddttp-Da In Closed Conformation
 gi|353251722|pdb|3PV8|D Chain D, Crystal Structure Of Bacillus Dna Polymerase I Large
            Fragment Bound To Dna And Ddttp-Da In Closed Conformation
 gi|353251729|pdb|3PX0|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
            Fragment Bound To Dna And Dctp-Da Mismatch (Tautomer) In
            Closed Conformation
 gi|353251730|pdb|3PX0|D Chain D, Crystal Structure Of Bacillus Dna Polymerase I Large
            Fragment Bound To Dna And Dctp-Da Mismatch (Tautomer) In
            Closed Conformation
 gi|353251735|pdb|3PX4|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
            Fragment Bound To Dna And Ddctp-Da Mismatch (Wobble) In
            Ajar Conformation
 gi|353251736|pdb|3PX4|D Chain D, Crystal Structure Of Bacillus Dna Polymerase I Large
            Fragment Bound To Dna And Ddctp-Da Mismatch (Wobble) In
            Ajar Conformation
 gi|353251741|pdb|3PX6|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
            Fragment Bound To Dna And Ddctp-Da Mismatch (Tautomer) In
            Closed Conformation
 gi|353251742|pdb|3PX6|D Chain D, Crystal Structure Of Bacillus Dna Polymerase I Large
            Fragment Bound To Dna And Ddctp-Da Mismatch (Tautomer) In
            Closed Conformation
 gi|353251866|pdb|3THV|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
            Fragment Bound To Dna And Ddatp-Dt In Closed Conformation
 gi|353251867|pdb|3THV|D Chain D, Crystal Structure Of Bacillus Dna Polymerase I Large
            Fragment Bound To Dna And Ddatp-Dt In Closed Conformation
 gi|353251872|pdb|3TI0|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
            Fragment Bound To Dna And Ddgtp-Dc In Closed Conformation
 gi|353251873|pdb|3TI0|D Chain D, Crystal Structure Of Bacillus Dna Polymerase I Large
            Fragment Bound To Dna And Ddgtp-Dc In Closed Conformation
 gi|390136476|pdb|4DSE|A Chain A, Ternary Complex Of Bacillus Dna Polymerase I Large Fragment
            F710y, Dna Duplex, And Rctp (Paired With Dg Of Template)
            In Presence Of Mg2+
 gi|390136477|pdb|4DSE|D Chain D, Ternary Complex Of Bacillus Dna Polymerase I Large Fragment
            F710y, Dna Duplex, And Rctp (Paired With Dg Of Template)
            In Presence Of Mg2+
 gi|390136482|pdb|4DSF|A Chain A, Ternary Complex Of Bacillus Dna Polymerase I Large Fragment
            F710y, Dna Duplex, And Rctp (Paired With Dg Of Template)
            In Presence Of Mn2+
 gi|390136483|pdb|4DSF|D Chain D, Ternary Complex Of Bacillus Dna Polymerase I Large Fragment
            F710y, Dna Duplex, And Rctp (Paired With Dg Of Template)
            In Presence Of Mn2+
          Length = 592

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 171/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 317  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 376

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 377  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 413

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +N+ I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 414  TPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 473

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 474  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 531

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L   LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 532  KEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 587

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 588  WYDAK 592


>gi|422825101|ref|ZP_16873280.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK678]
 gi|324996302|gb|EGC28210.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK678]
          Length = 880

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 178/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  +  +G++H     + T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  +  ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQVHDE++LE P++     +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  QLVKETMEAAI----ELAVPLVADENAGQTWYEAK 880


>gi|300021892|ref|YP_003754503.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523713|gb|ADJ22182.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
          Length = 995

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/310 (36%), Positives = 157/310 (50%), Gaps = 29/310 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GR+H S  +  T TGRL++  PNLQN P   K+  +IR AFIA  G  LI ADY 
Sbjct: 710  INAETGRIHTSYALGATTTGRLASSDPNLQNIPIRTKEGREIRTAFIADKGMQLISADYS 769

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 770  QIELRVLAHVADIPQLKKAFAEGLDIHAMTASEMFG----------------------VP 807

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            + KD  +  RR+AK +NF I YG +  GLA    +S EEA   +  ++     +  + +A
Sbjct: 808  V-KDMPSEVRRRAKAINFGIIYGISAFGLANQLSISREEASDYIKTYFQRFPGIRDYMDA 866

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             KK+     HV T+ GR   +P I +   S R  +ERAAIN P+QGSAAD+   AM+ + 
Sbjct: 867  TKKQVHAHGHVETIFGRRIHYPEINTKNPSMRGFLERAAINAPIQGSAADIIRRAMIRMP 926

Query: 1056 K---NARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
                +A+L     ++LLQVHDE++ E     A          M         L V + VD
Sbjct: 927  AALVDAKLSS--ARMLLQVHDELVFEVADNEASALITTARRVMETAAEPALKLAVPIHVD 984

Query: 1113 AKCAQNWYSA 1122
            AK A NW  A
Sbjct: 985  AKAANNWDEA 994


>gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3]
 gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3]
          Length = 922

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/316 (37%), Positives = 163/316 (51%), Gaps = 34/316 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P   ++  +IRQAFIA  G  
Sbjct: 637  LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRK 693

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++                 G
Sbjct: 694  ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVF-----------------G 736

Query: 929  EDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
             D        D+  SE RR+AK +NF + YG +  GLAR   +   EA+  +D ++    
Sbjct: 737  TD-------FDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYIDTYFARYP 789

Query: 988  EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
             VL + E  +  +    +V TL GR    P I+     +R   ERAAIN P+QG+AAD+ 
Sbjct: 790  GVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQGTAADII 849

Query: 1048 MCAMLEISKNARLKELG-WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLR 1106
              AM+ I+   +    G   +++QVHDE++ E  ++ AE  K  V E M+K      NL 
Sbjct: 850  KKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKLKVCELMAK----AANLD 905

Query: 1107 VDLSVDAKCAQNWYSA 1122
            V+L  +A    NW  A
Sbjct: 906  VELLAEAGIGDNWDQA 921



 Score = 45.4 bits (106), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
           L +  P  ED  IKKV  N  +D  VL N G+K+ G   DTM  + +++S  SR    G 
Sbjct: 395 LEKLRPLLEDAKIKKVGQNLKYDISVLANAGIKLQGVVFDTMLESYVFNSIASRHDMDGL 454

Query: 483 SLEALTGDRKVMSED 497
           +L+ L G + +  ED
Sbjct: 455 ALKYL-GHKNIAFED 468


>gi|334702620|ref|ZP_08518486.1| DNA polymerase I [Aeromonas caviae Ae398]
          Length = 916

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 177/358 (49%), Gaps = 37/358 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  +    L E   +  L S +   LPL    +  + GRVH 
Sbjct: 591  KGAPSTAEEVLA---ELAETYELPRLLMEHRGLAKLKSTYTDKLPLM---IKPQTGRVHT 644

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 645  SYHQAVAATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPCAGYKLVAADYSQIELRIMAHL 704

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +L AF  G D H  TA  ++    +AV +                         R
Sbjct: 705  SGDKGLLTAFAEGKDIHKATAAEVFGVALDAVTSDM-----------------------R 741

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GLA+   +   EA+K +DL++     VL + E  ++++    +
Sbjct: 742  RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQAEAQGY 801

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKELG 1064
            V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R +++  
Sbjct: 802  VETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDGWIRGIEDES 861

Query: 1065 WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
             ++L+QVHDE++ E   E  E   AI+ E MS        L V L V+A    NW  A
Sbjct: 862  IRMLMQVHDELVFEIREEKLEEYIAIIKEKMS----AAAELDVPLLVEAGTGDNWDQA 915



 Score = 47.8 bits (112), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 125/304 (41%), Gaps = 66/304 (21%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA--DFGNGKSCIWVDLLDGGGRDLLN 426
           + A DTE   +D  +   V     + F++  G  A   FG+      V L +     +L 
Sbjct: 338 LFAFDTETTSLDYMEARVVG----VSFAVEPGKAAYVPFGHDYLGAPVQLTEAV---VLG 390

Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
           +  P  EDP+  KV  N  +D +VL N+G+++ G   DTM  + + +S   T   + +++
Sbjct: 391 KLKPLLEDPARLKVGQNLKYDRNVLLNHGIELQGIAYDTMLESYVLNS---TASRHDMDS 447

Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
           L   R+ ++ +  ++++   KG      + +++   I                       
Sbjct: 448 LA--RRYLNVETISFEEIAGKG------VKQLTFNQI----------------------- 476

Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPF 605
               E E    Y+A D+  TL+L+++L        W KL  +P     +   + E   P 
Sbjct: 477 ----ELEQAAPYAAEDADITLRLHQTL--------WGKLSAEP----GLAKVFSEIELPL 520

Query: 606 GEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLR 665
             +L +ME  G  ++ + L +  +    E E  +    K A  H    +  N+ S  QL 
Sbjct: 521 LPVLARMERLGTTIEPKLLHQQSQ----EIEVRLAELEKQA--HELAGQEFNLSSPKQLG 574

Query: 666 QLLF 669
           ++LF
Sbjct: 575 EILF 578


>gi|319940068|ref|ZP_08014422.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV]
 gi|319810782|gb|EFW07109.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV]
          Length = 881

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 179/347 (51%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRYLQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  K +++AF+
Sbjct: 622  SVDPNLQNIPIRLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISGDKHLIEAFR 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                   ++P     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------NIERP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVETLFHRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         ++LLQVHDE++
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLGQALIDGNFKTRMLLQVHDEIV 838

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P       KA+V + M         L V L  D    + WY AK
Sbjct: 839  LEVPENELTAIKALVKDIMESAI----ELSVPLKADESAGKTWYEAK 881


>gi|114567529|ref|YP_754683.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str.
            Goettingen]
 gi|114338464|gb|ABI69312.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str.
            Goettingen]
          Length = 866

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/307 (36%), Positives = 165/307 (53%), Gaps = 31/307 (10%)

Query: 817  VSGKNGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS--LIVAD 873
            +  + GRVH       T TGRLS+  PNLQN P   ++  +IRQAF+A PG    ++ AD
Sbjct: 585  IHPETGRVHTIFKQAQTATGRLSSVEPNLQNIPIRMEEGRRIRQAFVA-PGPDWLIMAAD 643

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q++LR LAH++  + +++ FK+G D H+RTA          VE   V +EW   +   
Sbjct: 644  YSQIDLRSLAHISGDERLIETFKSGVDIHTRTA----------VEIFHVPVEWVDSEL-- 691

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       RR+AK +NF I YG +  GLARD  VS +EA+K +D + N    V  + 
Sbjct: 692  -----------RRRAKAVNFGIIYGISDFGLARDTGVSRKEARKYIDNYLNSYPGVKKYM 740

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E   +  R   +V TLL R R  P + +  +  +    R A+NTPVQG++AD+   AM++
Sbjct: 741  EDIVEFGRRHGYVETLLKRRRYLPELNARNKMVQAFGRRMALNTPVQGTSADIIKLAMIK 800

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            + +  R + L  +LLLQVHDE++LE P    E    ++ +CM        +L+V L V  
Sbjct: 801  VDEEIRKRRLQARLLLQVHDELLLELPRTELEEVSGLLRDCMENA----CSLKVPLEVSL 856

Query: 1114 KCAQNWY 1120
            K   NWY
Sbjct: 857  KTGPNWY 863


>gi|422822929|ref|ZP_16871118.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK405]
 gi|324991808|gb|EGC23733.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK405]
          Length = 880

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 178/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  +  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  +  ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQVHDE++LE P++     +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  QLVKETMEAAI----ELAVPLVADENAGQTWYEAK 880


>gi|422864729|ref|ZP_16911354.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1058]
 gi|327490470|gb|EGF22252.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1058]
          Length = 880

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 178/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  +  +G++H     + T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  +  ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQVHDE++LE P++     +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  KLVKETMEAAI----ELAVPLVADENAGQTWYEAK 880


>gi|392330137|ref|ZP_10274753.1| DNA polymerase I [Streptococcus canis FSL Z3-227]
 gi|391420009|gb|EIQ82820.1| DNA polymerase I [Streptococcus canis FSL Z3-227]
          Length = 880

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 184/347 (53%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AFK
Sbjct: 621  SVDPNLQNIPVRLEQGRL-IRKAFTPSQEDAVLLSSDYSQIELRVLAHISGDEHLIAAFK 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK      ++  A++RR AK +NF I 
Sbjct: 680  EGADIHTSTAMRVF-----------------GIDKA-----ENVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ ++AK  +D +++    +  + E   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGITRKQAKSYIDTYFDRYPGIKAYMENVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  +      K+LLQVHDE++
Sbjct: 778  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFKAKMLLQVHDEIV 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P++     + +V + M         L V L  D    Q+WY AK
Sbjct: 838  LEVPNDELTAIRELVKDTMEAAV----ALAVPLRADENAGQSWYEAK 880


>gi|260103165|ref|ZP_05753402.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075]
 gi|260083024|gb|EEW67144.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075]
          Length = 887

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 175/334 (52%), Gaps = 30/334 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            +S + +   I  + S ++  L   +V   +GRVH   L   T TGRLS+  PNLQN P  
Sbjct: 582  VSKILDYRQIAKIQSTYVKGLL--DVIQPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTR 639

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AF+ + P   +   DY Q+ELR+LAH++  ++M +AFK G D HS TAM +
Sbjct: 640  TEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKI 699

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            + H+ +  E                PL+       RR AK +NF I YG +  GL+++  
Sbjct: 700  F-HLESPDEV--------------TPLM-------RRHAKAVNFGIVYGISDYGLSKNLG 737

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            +S + A++ +D ++ +  ++  +     +E+R   +  T++ R R  P I +   + R  
Sbjct: 738  ISRKRAQEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAF 797

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER AIN+P+QGSAAD+   AM+ + K      L  K+++QVHDE+I + P +  E  K 
Sbjct: 798  AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKK 857

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            IV E M         L V L  D+    NWY AK
Sbjct: 858  IVPEVMQSAV----KLDVPLIADSGWGHNWYDAK 887


>gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661]
 gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661]
          Length = 928

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/325 (35%), Positives = 169/325 (52%), Gaps = 52/325 (16%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + ++G   RVH S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G+ 
Sbjct: 643  LPLMINPITG---RVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIASKGHK 699

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF  G D H  TA  ++         G  L +  G
Sbjct: 700  IVAADYSQIELRIMAHLSQDKGLLSAFAEGMDIHRATAAEVF---------GMALDKVTG 750

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 751  E--------------QRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 796

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E+ ++++    +V TL GR    P I +    +R   ERAAIN P+QG+AAD+  
Sbjct: 797  VLEYMESTRQQAAEKGYVSTLDGRRLYLPDINASNAMRRKAAERAAINAPMQGTAADIIK 856

Query: 1049 CAMLEISKNARLKELGW---------KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPF 1099
             AM+ +         GW         K+++QVHDE++ E  +   E A A + + M    
Sbjct: 857  KAMIAVD--------GWLTPQSAPDVKMIMQVHDELVFEVKTSEVEAATAKIRDLM---- 904

Query: 1100 NGKNNLRVD--LSVDAKCAQNWYSA 1122
              +N++++D  L VD     NW  A
Sbjct: 905  --ENSMKLDVPLQVDVGVGDNWEQA 927



 Score = 42.7 bits (99), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           +L    P  EDP++ KV  N  +D  VL+NY +++ G   DTM
Sbjct: 400 VLERLKPLLEDPALLKVGQNLKYDRGVLKNYDIELQGIKFDTM 442


>gi|126651389|ref|ZP_01723596.1| DNA polymerase I [Bacillus sp. B14905]
 gi|126591918|gb|EAZ86001.1| DNA polymerase I [Bacillus sp. B14905]
          Length = 875

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/323 (34%), Positives = 169/323 (52%), Gaps = 40/323 (12%)

Query: 812  LQGSNVSG-------KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            LQ + + G       K+ +VH       T TGRLS+  PNLQN P   ++  KIRQAF  
Sbjct: 582  LQSTYIEGLLKEIHEKDSKVHTRFQQALTATGRLSSTDPNLQNIPIRLEEGRKIRQAF-- 639

Query: 864  VPGNS---LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETG 920
            VP N    L  ADY Q+ELR+LAH++  K++++AF+ G D H+RTAM+++    + V++ 
Sbjct: 640  VPSNENWILFSADYSQIELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEDEVDSN 699

Query: 921  QVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVD 980
                                    RR AK +NF I YG +  GL+++  ++ +EA   +D
Sbjct: 700  M-----------------------RRAAKAVNFGIVYGISDYGLSQNLDITRKEAATFID 736

Query: 981  LWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQ 1040
             ++     V  + +   + ++ + +V T+L R R  P I S   + R+  ER A+NTP+Q
Sbjct: 737  KYFASFPGVKQYMDDIVQNAKFNGYVTTILNRRRYLPDITSSNFNLRSFAERTAMNTPIQ 796

Query: 1041 GSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFN 1100
            GSAAD+   AM+++    + + +  KLLLQVHDE+I E P E   + + IV E M     
Sbjct: 797  GSAADIIKKAMIDMDARLKKENMQAKLLLQVHDELIFEAPKEEIALLEKIVPEVMENAI- 855

Query: 1101 GKNNLRVDLSVDAKCAQNWYSAK 1123
                L V L VD      WY AK
Sbjct: 856  ---ELSVPLKVDFNHGSTWYEAK 875


>gi|146296993|ref|YP_001180764.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|38146975|gb|AAR11872.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410569|gb|ABP67573.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 849

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 170/308 (55%), Gaps = 28/308 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++   GRVH + +   T TGRL++   NLQN P    +   IR+AFI   G  LI ADY 
Sbjct: 569  INSVTGRVHSNFIQTGTATGRLASAESNLQNIPVKYDEGRLIRKAFIPEEGYVLIDADYS 628

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRILAH++  + +++AFK   D HS+TA  ++      V+  QV            P
Sbjct: 629  QIELRILAHISEDERLINAFKNNLDIHSQTAAEIF-----GVDVSQV-----------TP 672

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +       R +AK +NF I YG +  GL++D K+S +EA + ++ ++ +  +V  + + 
Sbjct: 673  TM-------RSQAKAVNFGIIYGISDYGLSKDIKISRKEAAEFINRYFEKYPKVKEYLDN 725

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              K +R +  V TL  R R    IKS  ++ RN+ ER A+N+P+QGSAAD+   AM+ + 
Sbjct: 726  VVKFARENGFVLTLFNRKRYIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAMIRVY 785

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
            +  + + L  +++LQVHDE+++E P E  E+ K IV   M        +L+V L V+ K 
Sbjct: 786  RRLKEENLKSRIILQVHDELLIESPYEEKEIVKEIVKTEMENAV----SLKVPLVVEVKE 841

Query: 1116 AQNWYSAK 1123
              NWY  K
Sbjct: 842  GLNWYETK 849


>gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4]
 gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4]
          Length = 922

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/316 (37%), Positives = 163/316 (51%), Gaps = 34/316 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P   ++  +IRQAFIA  G  
Sbjct: 637  LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRK 693

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++                 G
Sbjct: 694  ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVF-----------------G 736

Query: 929  EDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
             D        D+  SE RR+AK +NF + YG +  GLAR   +   EA+  +D ++    
Sbjct: 737  TD-------FDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYIDTYFARYP 789

Query: 988  EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
             VL + E  +  +    +V TL GR    P I+     +R   ERAAIN P+QG+AAD+ 
Sbjct: 790  GVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQGTAADII 849

Query: 1048 MCAMLEISKNARLKELG-WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLR 1106
              AM+ I+   +    G   +++QVHDE++ E  ++ AE  K  V E M+K      NL 
Sbjct: 850  KKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKLKVCELMAK----AANLD 905

Query: 1107 VDLSVDAKCAQNWYSA 1122
            V+L  +A    NW  A
Sbjct: 906  VELLAEAGIGDNWDQA 921



 Score = 43.5 bits (101), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 99/248 (39%), Gaps = 61/248 (24%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
           L +  P  ED  +KKV  N  +D  VL N G+++ G   DTM  + +++S  SR    G 
Sbjct: 395 LEKLRPILEDAKLKKVGQNLKYDISVLANAGIQLQGVVFDTMLESYVFNSVASRHDMDGL 454

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
           +L+ L G + +  ED                  GK + +  F + +L+         T A
Sbjct: 455 ALKYL-GHKNIAFED----------------IAGKGAKQLTFNQIQLE---------TAA 488

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
           P              Y+A D+  TL+L++ L        W    K     S+F    +  
Sbjct: 489 P--------------YAAEDADITLRLHQHL--------WPRLEKETELASVF---TDIE 523

Query: 603 QPFGEILVKMETEGMLVDREYLS-EIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            P  +IL  +E +G+ +D   L  + +++AR   E     +     K        N+ S 
Sbjct: 524 LPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETKAYDIAGEK-------FNLSSP 576

Query: 662 TQLRQLLF 669
            QL+ L F
Sbjct: 577 KQLQVLFF 584


>gi|392539918|ref|ZP_10287055.1| DNA polymerase I [Pseudoalteromonas marina mano4]
          Length = 911

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/323 (36%), Positives = 168/323 (52%), Gaps = 48/323 (14%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K  RVH S +   T TGRLS+  PNLQN P   ++  +IR+AFIA  G  
Sbjct: 626  LPLM---VNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L+AF  G D HS TA  ++                 G
Sbjct: 683  IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF-----------------G 725

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
             D      L D     RRKAK +NF + YG +  GLAR   V   EA+  +D ++     
Sbjct: 726  VD------LDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFERFPG 779

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++++  + +V T+ GR    P I +   ++R   ERAAIN P+QG+AAD+  
Sbjct: 780  VLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAADIIK 839

Query: 1049 CAMLEISKNARLKELGW---------KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPF 1099
             AML +++        W         KLL+QVHDE++ E  ++ AE     + E MS+  
Sbjct: 840  KAMLSVNQ--------WVYEQAPNTVKLLMQVHDELVFEIKTDCAEAYTKQICELMSQ-- 889

Query: 1100 NGKNNLRVDLSVDAKCAQNWYSA 1122
                +L V L V+A   +NW  A
Sbjct: 890  --AASLDVPLIVEADEGENWEQA 910


>gi|359451863|ref|ZP_09241241.1| DNA polymerase I [Pseudoalteromonas sp. BSi20480]
 gi|358042321|dbj|GAA77490.1| DNA polymerase I [Pseudoalteromonas sp. BSi20480]
          Length = 911

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/323 (36%), Positives = 168/323 (52%), Gaps = 48/323 (14%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K  RVH S +   T TGRLS+  PNLQN P   ++  +IR+AFIA  G  
Sbjct: 626  LPLM---VNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L+AF  G D HS TA  ++                 G
Sbjct: 683  IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF-----------------G 725

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
             D      L D     RRKAK +NF + YG +  GLAR   V   EA+  +D ++     
Sbjct: 726  VD------LDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFERFPG 779

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++++  + +V T+ GR    P I +   ++R   ERAAIN P+QG+AAD+  
Sbjct: 780  VLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAADIIK 839

Query: 1049 CAMLEISKNARLKELGW---------KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPF 1099
             AML +++        W         KLL+QVHDE++ E  ++ AE     + E MS+  
Sbjct: 840  KAMLSVNQ--------WVYEQAPNTVKLLMQVHDELVFEIKTDCAEAYTKQICELMSQ-- 889

Query: 1100 NGKNNLRVDLSVDAKCAQNWYSA 1122
                +L V L V+A   +NW  A
Sbjct: 890  --AASLDVPLIVEADEGENWEQA 910


>gi|407892765|ref|ZP_11151795.1| DNA polymerase I [Diplorickettsia massiliensis 20B]
          Length = 901

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/311 (36%), Positives = 158/311 (50%), Gaps = 31/311 (9%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LP Q   ++ K GR+H S +     TGRLS+  PNLQN P   ++  KIR+AFIA PG  
Sbjct: 617  LPQQ---INPKTGRIHTSYHQAAVVTGRLSSSDPNLQNIPIRHEEGRKIRKAFIAAPGYR 673

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            LI ADY Q+ELRI+AH +    +L AF+   D H  TA  ++    +AV T Q       
Sbjct: 674  LIAADYSQIELRIMAHFSQDAGLLHAFQQNLDIHQATASEIFKTPLDAVTTEQ------- 726

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR AK +NF + YG +  GLAR   +   EAK  +D ++     
Sbjct: 727  ----------------RRCAKAVNFGLIYGMSAFGLARQLGIDRTEAKAYIDRYFKRYPG 770

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            V  + E  ++E++   +V TL GR    P I S    Q+   ERAAIN P+QGSAAD+  
Sbjct: 771  VKAYMERTRQEAKAQGYVTTLFGRRLHLPHILSQQTLQQKASERAAINAPLQGSAADIIK 830

Query: 1049 CAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVD 1108
             AM+   +  R ++L   +++QVHDE+++E  +      +  + +CM         L V 
Sbjct: 831  KAMIATDQCLRSQKLDATIIMQVHDELVIEAEASQVPQIRHQLEQCMIH----AATLCVP 886

Query: 1109 LSVDAKCAQNW 1119
            L VD  C  NW
Sbjct: 887  LVVDIGCGLNW 897



 Score = 43.5 bits (101), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 32/52 (61%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSS 475
           +L +  P  E+P+++K+ H+  +D +VL N G+ + G   DT+  + L DS+
Sbjct: 374 VLAQLKPLLENPTLQKIGHHLKYDMNVLANQGITLQGIAFDTLLESYLLDSA 425


>gi|24376141|ref|NP_720184.1| DNA polymerase I PolA [Shewanella oneidensis MR-1]
 gi|24351181|gb|AAN57628.1| DNA polymerase I PolA [Shewanella oneidensis MR-1]
          Length = 922

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/312 (36%), Positives = 161/312 (51%), Gaps = 32/312 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P    +  +IRQAFIA  G  
Sbjct: 637  LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTVEGRRIRQAFIAPEGRK 693

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L+AF  G D H  TA  ++    ++V + Q       
Sbjct: 694  ILAADYSQIELRIMAHLSQDAGLLNAFAEGKDIHRATAAEVFGTDFDSVTSEQ------- 746

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR+AK +NF + YG +  GLAR   +   EA+  +D ++     
Sbjct: 747  ----------------RRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYIDTYFARYPG 790

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +  +    +V TL GR    P I+     +R   ERAAIN P+QG+AAD+  
Sbjct: 791  VLRYMEETRASAADLGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQGTAADIIK 850

Query: 1049 CAMLEISKNARLKELG-WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRV 1107
             AM+ I+   +    G   +++QVHDE++ E  ++ AE  K  V E M+K      NL V
Sbjct: 851  KAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAK----AANLDV 906

Query: 1108 DLSVDAKCAQNW 1119
            +L  +A    NW
Sbjct: 907  ELLAEAGIGDNW 918



 Score = 42.7 bits (99), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 96/248 (38%), Gaps = 61/248 (24%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
           L +  P  ED  +KKV  N  +D  VL N G+ + G   DTM  + +++S  SR    G 
Sbjct: 395 LEKLRPILEDAKLKKVGQNLKYDISVLANAGITLQGVAFDTMLESYVFNSVASRHDMDGL 454

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
           +L+ L G + +  ED                  GK + +  F +  L+         T A
Sbjct: 455 ALKYL-GHKNIAFED----------------IAGKGAKQLTFNQISLE---------TAA 488

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
           P              Y+A D+  TL+L++ L        W    K     S+F    +  
Sbjct: 489 P--------------YAAEDADITLRLHQHL--------WPRLEKEAELASVF---TDIE 523

Query: 603 QPFGEILVKMETEGMLVDREYLS-EIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            P   IL  +E +G+ +D   L  + E++AR   E     +     K        N+ S 
Sbjct: 524 LPLIHILSDIERQGVFIDSMLLGQQSEELARKIDELETKAYDIAGEK-------FNLSSP 576

Query: 662 TQLRQLLF 669
            QL+ L F
Sbjct: 577 KQLQVLFF 584


>gi|395239214|ref|ZP_10417105.1| DNA polymerase [Lactobacillus gigeriorum CRBIP 24.85]
 gi|394476636|emb|CCI87082.1| DNA polymerase [Lactobacillus gigeriorum CRBIP 24.85]
          Length = 885

 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/312 (34%), Positives = 169/312 (54%), Gaps = 32/312 (10%)

Query: 816  NVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAV-PGNSLIVAD 873
            +V   +GR+H   L   T TGRLS+  PNLQN P   ++  +IR+AF+   P   +   D
Sbjct: 602  DVIQPDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPTDPEGYIFSCD 661

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH++  ++M +AFK G D HS TAM ++ H+                D P 
Sbjct: 662  YSQVELRVLAHVSGDENMQEAFKTGYDIHSHTAMKIF-HL----------------DSPD 704

Query: 934  --VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLT 991
               PL+       RR AK +NF I YG +  GL+++  ++ ++AK+ ++ ++ +  ++  
Sbjct: 705  QVTPLM-------RRHAKAVNFGIVYGISDYGLSKNLGITRKQAKEFIENYFEQYPQIKQ 757

Query: 992  WQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAM 1051
            + +   K +R + +  TL+ R R  P I +   + R+  ER AIN+P+QGSAAD+   AM
Sbjct: 758  YMDDAIKMARENGYAETLMHRRRYLPDIHAKNFTVRSFAERTAINSPIQGSAADIIKVAM 817

Query: 1052 LEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSV 1111
            + + K     +L  K++LQVHDE+I + P +  E+ K IV E M         L V L  
Sbjct: 818  INMQKKLVELKLKSKMILQVHDELIFDVPKDELEIMKRIVPEVMQDAI----TLDVPLIA 873

Query: 1112 DAKCAQNWYSAK 1123
            D+    NWY AK
Sbjct: 874  DSGWGHNWYDAK 885


>gi|422871953|ref|ZP_16918446.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1087]
 gi|328945225|gb|EGG39379.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1087]
          Length = 880

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 178/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  +  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  +  ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQVHDE++LE P++     +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  QLVKETMEAAI----ELAVPLVADENTGQTWYEAK 880


>gi|357634312|ref|ZP_09132190.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
 gi|357582866|gb|EHJ48199.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
          Length = 878

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/348 (33%), Positives = 173/348 (49%), Gaps = 34/348 (9%)

Query: 780  ATEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
            +T QEA E        +  + E   ++ L S ++ PL    ++   GR+H + N + T T
Sbjct: 559  STSQEALERLAGENPLVDRILEFRKLEKLRSTYLDPL--PRLADAAGRIHTTFNNLATAT 616

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+  PNLQN P       ++R+ F+A  G  L+ ADY Q+ELR+LAHL+   ++L A
Sbjct: 617  GRLSSSNPNLQNIPIRGTLGRRMRECFVAAAGKKLVAADYSQIELRVLAHLSGEPALLAA 676

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F+ G D H+RTA  ++                   DK    +  D    ERR+AK +NF 
Sbjct: 677  FEQGADIHARTAAILF-------------------DKAEADIRPD----ERRQAKTINFG 713

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            + YG  P  L+RD  + ++ AK  ++ ++     + T+ +     ++    V TL GR R
Sbjct: 714  LLYGMGPQKLSRDLGIKLDAAKAFIEKYFERLSGLSTFYQGIVDTAKAQGFVTTLAGRRR 773

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDE 1074
              P I S      +   R AINT VQG AAD+   AML    +  L  LG  ++LQVHDE
Sbjct: 774  LLPEIHSANSQLASQARRQAINTVVQGGAADIIKMAMLAAHNDPELAGLGAAMVLQVHDE 833

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            ++LE P  +A+ A     E +S    G   L V L+VD    Q W  A
Sbjct: 834  LLLETPEAAAQAAG----ERLSALMCGVVALAVPLAVDWGAGQTWGQA 877


>gi|209558735|ref|YP_002285207.1| DNA polymerase I [Streptococcus pyogenes NZ131]
 gi|209539936|gb|ACI60512.1| DNA polymerase I [Streptococcus pyogenes NZ131]
          Length = 880

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 182/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCSLNIN-TETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H     + T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 621  SVDPNLQNIPIRLEQGRL-IRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFN 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK       D  A++RR AK +NF I 
Sbjct: 680  EGADIHTSTAMRVF-----------------GIDKAA-----DVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  +      K LLQVHDE++
Sbjct: 778  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKCLLQVHDEIV 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P++     K +V + M        +L V L VD    Q+WY AK
Sbjct: 838  LEVPNDELTAIKKLVKDTMEAAV----DLAVPLCVDESTGQSWYEAK 880


>gi|161507870|ref|YP_001577834.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348859|gb|ABX27533.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 887

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 175/334 (52%), Gaps = 30/334 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            +S + +   I  + S ++  L   +V   +GRVH   L   T TGRLS+  PNLQN P  
Sbjct: 582  VSKILDYRQIAKIQSTYVKGLL--DVIQPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTR 639

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AF+ + P   +   DY Q+ELR+LAH++  ++M +AFK G D HS TAM +
Sbjct: 640  TEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKI 699

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            + H+ +  E                PL+       RR AK +NF I YG +  GL+++  
Sbjct: 700  F-HLESPDEV--------------TPLM-------RRHAKAVNFGIVYGISDYGLSKNLG 737

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            +S + A++ +D ++ +  ++  +     +E+R   +  T++ R R  P I +   + R  
Sbjct: 738  ISRKRAQEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAF 797

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER AIN+P+QGSAAD+   AM+ + K      L  K+++QVHDE+I + P +  E  K 
Sbjct: 798  AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKK 857

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            IV E M         L V L  D+    NWY AK
Sbjct: 858  IVPEVMQSAV----KLDVPLIADSGWGHNWYDAK 887


>gi|299688922|pdb|3HP6|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus
            Stearothermophilus F710y Mutant Bound To G:t Mismatch
 gi|299688923|pdb|3HP6|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From Bacillus
            Stearothermophilus F710y Mutant Bound To G:t Mismatch
          Length = 580

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 171/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 305  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 364

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 365  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 401

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +N+ I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 402  TPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 461

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 462  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 519

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L   LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 520  KEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 575

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 576  WYDAK 580


>gi|119470389|ref|ZP_01613117.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
            3'->5' polymerase; 3'->5' exonuclease (C-terminal)
            [Alteromonadales bacterium TW-7]
 gi|119446314|gb|EAW27590.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
            3'->5' polymerase; 3'->5' exonuclease (C-terminal)
            [Alteromonadales bacterium TW-7]
          Length = 911

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/323 (36%), Positives = 168/323 (52%), Gaps = 48/323 (14%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K  RVH S +   T TGRLS+  PNLQN P   ++  +IR+AFIA  G  
Sbjct: 626  LPLM---VNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L+AF  G D HS TA  ++                 G
Sbjct: 683  IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF-----------------G 725

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
             D      L D     RRKAK +NF + YG +  GLAR   V   EA+  +D ++     
Sbjct: 726  VD------LDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFERFPG 779

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++++  + +V T+ GR    P I +   ++R   ERAAIN P+QG+AAD+  
Sbjct: 780  VLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAADIIK 839

Query: 1049 CAMLEISKNARLKELGW---------KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPF 1099
             AML +++        W         KLL+QVHDE++ E  ++ AE     + E MS+  
Sbjct: 840  KAMLSVNQ--------WVYEQAPNTVKLLMQVHDELVFEIKTDCAEAYTKQICELMSQ-- 889

Query: 1100 NGKNNLRVDLSVDAKCAQNWYSA 1122
                +L V L V+A   +NW  A
Sbjct: 890  --AASLDVPLIVEADEGENWEQA 910


>gi|301300333|ref|ZP_07206538.1| DNA-directed DNA polymerase [Lactobacillus salivarius
            ACS-116-V-Col5a]
 gi|300852069|gb|EFK79748.1| DNA-directed DNA polymerase [Lactobacillus salivarius
            ACS-116-V-Col5a]
          Length = 416

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 170/309 (55%), Gaps = 28/309 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            VS K+G+ H       T TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  +DY
Sbjct: 134  VSKKDGKAHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDY 193

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++  K+M +AFK G D H+ TAM ++                   D P  
Sbjct: 194  SQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIF-----------------NVDSP-- 234

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                +   + RR+AK +NF I YG +  GL+++  +S ++AK+ +D + +    V  + E
Sbjct: 235  ---DEVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYME 291

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               + ++ + +V T+  R R  P IKS   + R+  ER A+N+P+QGSAAD+   AM+ +
Sbjct: 292  KIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSAADIIKVAMINM 351

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
             +  + K L  K+LLQVHDE+I E P++   + + +V + M         L V L V++K
Sbjct: 352  QEMLKEKNLQAKMLLQVHDELIFEAPTKEIPLLEDMVPKVMDSAV----KLDVPLKVESK 407

Query: 1115 CAQNWYSAK 1123
              Q W+  K
Sbjct: 408  HGQTWFDTK 416


>gi|22536572|ref|NP_687423.1| DNA polymerase I [Streptococcus agalactiae 2603V/R]
 gi|25010498|ref|NP_734893.1| DNA polymerase I [Streptococcus agalactiae NEM316]
 gi|76786985|ref|YP_329109.1| DNA polymerase I [Streptococcus agalactiae A909]
 gi|77406448|ref|ZP_00783505.1| DNA polymerase I [Streptococcus agalactiae H36B]
 gi|77411656|ref|ZP_00787996.1| DNA polymerase I [Streptococcus agalactiae CJB111]
 gi|406708910|ref|YP_006763636.1| DNA polymerase I [Streptococcus agalactiae GD201008-001]
 gi|424050307|ref|ZP_17787854.1| DNA polymerase I [Streptococcus agalactiae ZQ0910]
 gi|22533407|gb|AAM99295.1|AE014209_8 DNA polymerase I [Streptococcus agalactiae 2603V/R]
 gi|23094851|emb|CAD46069.1| DNA polymerase I [Streptococcus agalactiae NEM316]
 gi|76562042|gb|ABA44626.1| DNA polymerase I [Streptococcus agalactiae A909]
 gi|77162300|gb|EAO73271.1| DNA polymerase I [Streptococcus agalactiae CJB111]
 gi|77174950|gb|EAO77762.1| DNA polymerase I [Streptococcus agalactiae H36B]
 gi|389648224|gb|EIM69735.1| DNA polymerase I [Streptococcus agalactiae ZQ0910]
 gi|406649795|gb|AFS45196.1| DNA polymerase I [Streptococcus agalactiae GD201008-001]
          Length = 880

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/337 (33%), Positives = 183/337 (54%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VTKILEYRQITKLQSTYIIGLQDYIL--EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    N+++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     ++   ++RR AK +NF I YG +  GL+ + 
Sbjct: 692  VF-----------------GIEKP-----ENVTPNDRRNAKAVNFGIVYGISDFGLSHNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +  + AK+ +D ++     +  + E   +E++   +V TL  R R  P I S   + R 
Sbjct: 730  GIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQ 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + +   L + G+  K+LLQVHDE++LE P+E    
Sbjct: 790  FAERTAINSPIQGSAADILKIAMINLDR--VLDKGGYKSKMLLQVHDEIVLEVPNEEIGA 847

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             + +V + M        +L V L  D    + WY AK
Sbjct: 848  IRELVTKTMESAI----SLSVPLIADENAGETWYEAK 880


>gi|158320241|ref|YP_001512748.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
 gi|158140440|gb|ABW18752.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
          Length = 894

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 182/357 (50%), Gaps = 34/357 (9%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++N  +    Q+  E    IS   +V  + +   + +L    S ++    R+H S 
Sbjct: 570  KTGYSTNADVLEKLQDQHEIIPKISEYRQVTKLKTTYVDGLL----SIINPVTNRIHSSF 625

Query: 829  NIN-TETGRLSARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLA 886
            N   T TGR+S+  PNLQN P  LE  R ++R+ FI+  G+  I ADY Q+ELR+LAH+A
Sbjct: 626  NQTVTATGRISSTEPNLQNIPVRLEMGR-RLRKVFISKEGHEFIDADYSQIELRVLAHIA 684

Query: 887  NCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERR 946
               +++DAF    D H+RTA  ++                       VP+ ++  +  R 
Sbjct: 685  KDDNLIDAFIKNQDIHTRTASEIFE----------------------VPM-EEVTSLMRG 721

Query: 947  KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006
             AK +NF I YG +  GL+++  + V +AKK ++ ++ +   +  +     +E +   +V
Sbjct: 722  DAKAVNFGIVYGISDFGLSQNLNIPVSKAKKYIESYFEKYPSIKEYMHNIVEEGKEKGYV 781

Query: 1007 HTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK 1066
             TLL R R  P +KS   + R+  ER A+NTP+QGSAAD+   AM+ +    + +    K
Sbjct: 782  VTLLNRRRYLPELKSSNFNIRSFGERIAMNTPIQGSAADIIKIAMIAVYNRLKAENYDAK 841

Query: 1067 LLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            L+LQVHDE+I+E P    E    I+ E M         L+VDLS     A NWY AK
Sbjct: 842  LILQVHDELIIECPENEIEEVSKILKESMENAIEMVVPLKVDLS----YANNWYDAK 894


>gi|387930085|ref|ZP_10132762.1| DNA polymerase I [Bacillus methanolicus PB1]
 gi|387586903|gb|EIJ79227.1| DNA polymerase I [Bacillus methanolicus PB1]
          Length = 877

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/310 (36%), Positives = 165/310 (53%), Gaps = 31/310 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADY 874
            V  K  +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAFI    + +I  ADY
Sbjct: 596  VDPKTDKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSEKDWVIFAADY 655

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+AN + ++ AFK   D H++TAM ++ H+                     
Sbjct: 656  SQIELRVLAHIANDEKLIQAFKEDLDIHTKTAMEVF-HVE-------------------- 694

Query: 935  PLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
               KD   S  RR AK +NF I YG +  GL++   ++ +EA K ++ +      V  + 
Sbjct: 695  ---KDEVTSNMRRHAKAVNFGIVYGISDYGLSQSLGITRKEAAKFIERYLESYPGVKEYM 751

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E   KE++   +V T+L R R  P I S   + R+  ER A+NTP+QGSAAD+   AM++
Sbjct: 752  EEIVKEAKQIGYVSTILHRRRYLPEITSRNYNVRSFAERTAMNTPIQGSAADIIKKAMID 811

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            +++  + + L  +LLLQVHDE+I E P +  E    IV + M         L+V L VD 
Sbjct: 812  MAERLKAEGLKTRLLLQVHDELIFEAPKDEIEKLTEIVPDVMENAV----ELKVPLKVDY 867

Query: 1114 KCAQNWYSAK 1123
                 W+ AK
Sbjct: 868  SFGPTWFDAK 877


>gi|266618521|pdb|3EYZ|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
            With Duplex Dna (Open Form)
          Length = 580

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 171/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 305  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 364

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 365  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 401

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +N+ I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 402  TPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 461

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 462  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 519

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L   LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 520  KEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 575

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 576  WYDAK 580


>gi|259500513|ref|ZP_05743415.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335]
 gi|259167897|gb|EEW52392.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335]
          Length = 890

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 170/305 (55%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
            +G++H   L   T TGRLS+  PNLQN P   ++  +IR+AF+    +S L   DY Q+E
Sbjct: 612  DGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVE 671

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+++ K+ML+AFK G D H+ TAM ++  + N  E                PL+ 
Sbjct: 672  LRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFG-LSNLDEV--------------TPLM- 715

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GLA++  +S +EA+  ++ ++ +  ++  + +A  K
Sbjct: 716  ------RRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVK 769

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R   +  T++ R R  P I +   + R+  ER AIN+P+QGSAAD+   AM+++    
Sbjct: 770  LAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSEL 829

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              ++L  K++LQ+HDE++ + PSE  ++ + +V E M +       L V L  DA    N
Sbjct: 830  ERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQA----AQLDVPLIADANWGHN 885

Query: 1119 WYSAK 1123
            WY  K
Sbjct: 886  WYEVK 890


>gi|333897428|ref|YP_004471302.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
 gi|38146977|gb|AAR11873.1| DNA polymerase I [Thermoanaerobacterium thermosulfurigenes]
 gi|333112693|gb|AEF17630.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 867

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 173/310 (55%), Gaps = 31/310 (10%)

Query: 817  VSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADY 874
            +  +N RVH +       TGR+S+  PNLQN P  E+   +IR+AF++   + LI+ ADY
Sbjct: 586  IMDENNRVHSTFKQTVAATGRISSTEPNLQNIPVREEFGRRIRKAFVSSYEDGLIISADY 645

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAHL+  + ++++F    D H RTA  ++                        
Sbjct: 646  SQIELRVLAHLSEDEKLIESFLNNEDIHLRTASEVFK----------------------- 682

Query: 935  PLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             + K+   SE RR+AK +NF I YG +  GL++D K+S +EAK+ +D +++  + V  + 
Sbjct: 683  -VSKEEVTSEMRRRAKAVNFGIVYGISDYGLSKDLKISRKEAKEYIDNYFDRYKGVKNYI 741

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            ++  K ++ + +V T+L R R  P I S   +QR+  ER A+NTP+QGSAAD+   +M++
Sbjct: 742  DSIVKFAKENGYVTTILNRRRYIPEINSKNFNQRSFGERMAMNTPIQGSAADIIKMSMVK 801

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            +    + + L  +L+LQVHDE+I++   +  E+ K ++   M         L+V L VD 
Sbjct: 802  VYNELKERGLKSRLILQVHDELIIDTHPDEVEIVKELLKSIMENII----KLKVPLVVDI 857

Query: 1114 KCAQNWYSAK 1123
               +NWY AK
Sbjct: 858  GQGKNWYDAK 867


>gi|122920458|pdb|2HVH|A Chain A, Ddctp:o6meg Pair In The Polymerase Active Site (0 Position)
 gi|122920459|pdb|2HVH|D Chain D, Ddctp:o6meg Pair In The Polymerase Active Site (0 Position)
 gi|122920465|pdb|2HVI|A Chain A, Ddctp:g Pair In The Polymerase Active Site (0 Position)
 gi|122920466|pdb|2HVI|D Chain D, Ddctp:g Pair In The Polymerase Active Site (0 Position)
 gi|266618524|pdb|3EZ5|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
            With Duplex Dna , Dctp, And Zinc (Closed Form).
 gi|266618525|pdb|3EZ5|D Chain D, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
            With Duplex Dna , Dctp, And Zinc (Closed Form)
          Length = 580

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 171/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 305  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 364

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 365  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 401

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +N+ I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 402  TPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 461

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 462  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 519

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L   LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 520  KEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 575

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 576  WYDAK 580


>gi|289166948|ref|YP_003445215.1| DNA-directed DNA polymerase [Streptococcus mitis B6]
 gi|288906513|emb|CBJ21345.1| DNA-directed DNA polymerase [Streptococcus mitis B6]
          Length = 877

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/348 (34%), Positives = 186/348 (53%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWENSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P     +D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----EDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQVHDE++
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIV 834

Query: 1077 LEGP-SESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P SE AE+ K +V + M +       L V L  D      WY AK
Sbjct: 835  LEVPKSELAEM-KKLVKQTMEEAI----QLSVPLIADENEGATWYEAK 877


>gi|407452638|ref|YP_006724363.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain-containing
            protein [Riemerella anatipestifer RA-CH-1]
 gi|403313622|gb|AFR36463.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain protein
            [Riemerella anatipestifer RA-CH-1]
          Length = 935

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 174/336 (51%), Gaps = 33/336 (9%)

Query: 790  DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSL-NINTETGRLSARRPNLQN 846
            + I  + E   +  L S ++  LP Q   +S  +GRVH S       TGRL++  PNLQN
Sbjct: 629  EIIKLILEYRQLQKLKSTYVDALPNQ---ISPIDGRVHTSFAQTVAATGRLASNNPNLQN 685

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
             P   +   ++R AF+A  G  ++ ADY Q+ELR++A ++  ++M++AFK G D H+ TA
Sbjct: 686  IPIRTERGQQVRGAFVASKGAKIVSADYSQIELRLIAEISGEETMINAFKEGQDIHASTA 745

Query: 907  MNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLAR 966
              ++                   D P    L +   ++R +AK +NF I YG++   LA 
Sbjct: 746  SKLF-------------------DVP----LSEVSKTQRSQAKTVNFGIIYGQSAFALAD 782

Query: 967  DWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQ 1026
               +S  +AK+ +D +Y    ++  +   + + +R   +V T++GR R    I S     
Sbjct: 783  QTGLSRTDAKQLIDSYYETYPKLKAFMAEQVQVARKKGYVETIMGRRRHLKDINSNNFVV 842

Query: 1027 RNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEV 1086
            R H ER A+N P+QGSAAD+   AM++I    + + L  K+LLQVHDE+I E P+E  EV
Sbjct: 843  RGHAERNAVNAPIQGSAADIIKLAMIKIDSEIKAQGLKTKMLLQVHDELIFEVPNEEIEV 902

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            A  ++ + M   ++ K    V L  +     NW  A
Sbjct: 903  ATTLIKQEMETAYSTK----VPLLTEVGVGDNWLEA 934



 Score = 47.8 bits (112), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
           ++  F PFFE  SI K+ HN  +D  VL NYG++V+G   DTM    L +   R
Sbjct: 408 IVERFRPFFEKESILKIAHNLKYDYKVLLNYGIEVTGNLFDTMIAHYLLNPDGR 461


>gi|312871738|ref|ZP_07731826.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a]
 gi|311092680|gb|EFQ51036.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a]
          Length = 883

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 170/305 (55%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
            +G++H   L   T TGRLS+  PNLQN P   ++  +IR+AF+    +S L   DY Q+E
Sbjct: 605  DGKIHTRFLQTLTATGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVE 664

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+++ K+ML+AFK G D H+ TAM ++  + N  E                PL+ 
Sbjct: 665  LRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFG-LSNLDEV--------------TPLM- 708

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GLA++  +S +EA+  ++ ++ +  ++  + +A  K
Sbjct: 709  ------RRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVK 762

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R   +  T++ R R  P I +   + R+  ER AIN+P+QGSAAD+   AM+++    
Sbjct: 763  LAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSEL 822

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              ++L  K++LQ+HDE++ + PSE  ++ + +V E M +       L V L  DA    N
Sbjct: 823  ERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQA----AQLDVPLIADANWGHN 878

Query: 1119 WYSAK 1123
            WY  K
Sbjct: 879  WYEVK 883


>gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5]
 gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5]
          Length = 915

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 155/301 (51%), Gaps = 28/301 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S +   T TGRLS+  PNLQN P    +  +IR+AFIA PG +LI ADY Q+ELR+
Sbjct: 641  RVHTSFSQAITTTGRLSSNEPNLQNIPIRTSEGARIRRAFIAAPGKALISADYSQIELRL 700

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+  ++ ++F  G D H+RTA  ++             L   G D    P++    
Sbjct: 701  LAHVADIPALKESFAKGEDIHARTAAEVFG------------LPMEGMD----PMV---- 740

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLAR   +   EAK+ +D ++    E+  +     + +R
Sbjct: 741  ---RRRAKAINFGIIYGISAFGLARQLGIENSEAKRFIDAYFARYPEIRRYMNETAEFAR 797

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T  GR    P I     ++R + ER AIN P+QG AAD+   AM+ +    R  
Sbjct: 798  THGYVLTPFGRRCYVPGITEKNPARRGYAERQAINAPLQGGAADIIKRAMVRLPAAIRDA 857

Query: 1062 ELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYS 1121
             L   +LLQVHDE++ E P + AE    +    M     G  +L V L V+     NW  
Sbjct: 858  GLDAVMLLQVHDELVFEAPKDQAEATAKLACAVM----QGAASLSVPLLVETGIGANWSD 913

Query: 1122 A 1122
            A
Sbjct: 914  A 914



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 61/133 (45%), Gaps = 18/133 (13%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDL-----L 425
           A DTE   ++ +      H +++  S+ + P      G++  +V L    G  L     L
Sbjct: 343 AIDTETTGLNPR------HAKLVGISVATAP------GRAA-YVPLGHEDGPQLPRPLAL 389

Query: 426 NEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLE 485
              AP   DPSI K++HN  FD HVLE  GL  +    DTM M+    + R   G   L 
Sbjct: 390 ERLAPVLADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGMDELS 449

Query: 486 ALTGDRKVMSEDK 498
           AL  D + +S D+
Sbjct: 450 ALHLDHRPISYDE 462


>gi|122920421|pdb|2HHW|A Chain A, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active Site,
            In The Closed Conformation
 gi|122920422|pdb|2HHW|D Chain D, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active Site,
            In The Closed Conformation
          Length = 580

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 171/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 305  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 364

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 365  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 401

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +N+ I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 402  TPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 461

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 462  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 519

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L   LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 520  KEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 575

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 576  WYDAK 580


>gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium hydrogeniformans]
 gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium hydrogeniformans]
          Length = 880

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 179/330 (54%), Gaps = 33/330 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            IS   E+  + S   + + PL    ++ + G++H S N + T TGRLS+  PNLQN P  
Sbjct: 570  ISEYRELAKLKSTYIDSLPPL----INSETGKIHTSFNQMVTATGRLSSTNPNLQNIPIR 625

Query: 851  EKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AFI    N +++A DY Q+ELR+ AHL+  K + +AF +G D H+ TA  +
Sbjct: 626  TEEGREIRKAFIPSSDNMILLAVDYSQIELRVFAHLSGDKRLKEAFNSGRDIHTETASEI 685

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +      VE  QV         P +          RR AK++NF +AYG +  GL++D  
Sbjct: 686  F-----EVEAEQV--------SPNL----------RRHAKVINFGLAYGMSAYGLSQDLD 722

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            + VEEA+  +D ++     V  + +   ++ +   +  TL GR R  P I S    +R+ 
Sbjct: 723  IPVEEAQDYIDKYFERFSGVKKYMDETIQKVKEKGYAETLYGRKRYIPEINSSNYHRRSF 782

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER+AINTPVQG+AAD+   +ML++  + +  +L   +LLQVHDE++ E  ++  E A  
Sbjct: 783  AERSAINTPVQGTAADIMKKSMLDVYDSLKDIDLEINILLQVHDELVFEVANKDLEKAAL 842

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            ++ + M         L V L VD + A+NW
Sbjct: 843  LIKDKME----AAAELDVPLLVDLQIAENW 868


>gi|312872962|ref|ZP_07733022.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1]
 gi|311091484|gb|EFQ49868.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1]
          Length = 883

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 170/305 (55%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
            +G++H   L   T TGRLS+  PNLQN P   ++  +IR+AF+    +S L   DY Q+E
Sbjct: 605  DGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVE 664

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+++ K+ML+AFK G D H+ TAM ++  + N  E                PL+ 
Sbjct: 665  LRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFG-LSNLDEV--------------TPLM- 708

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GLA++  +S +EA+  ++ ++ +  ++  + +A  K
Sbjct: 709  ------RRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVK 762

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R   +  T++ R R  P I +   + R+  ER AIN+P+QGSAAD+   AM+++    
Sbjct: 763  LAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSEL 822

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              ++L  K++LQ+HDE++ + PSE  ++ + +V E M +       L V L  DA    N
Sbjct: 823  ERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQA----AQLDVPLIADANWGHN 878

Query: 1119 WYSAK 1123
            WY  K
Sbjct: 879  WYEVK 883


>gi|312875574|ref|ZP_07735575.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b]
 gi|311088828|gb|EFQ47271.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b]
          Length = 883

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 170/305 (55%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
            +G++H   L   T TGRLS+  PNLQN P   ++  +IR+AF+    +S L   DY Q+E
Sbjct: 605  DGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVE 664

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+++ K+ML+AFK G D H+ TAM ++  + N  E                PL+ 
Sbjct: 665  LRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFG-LSNLDEV--------------TPLM- 708

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GLA++  +S +EA+  ++ ++ +  ++  + +A  K
Sbjct: 709  ------RRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVK 762

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R   +  T++ R R  P I +   + R+  ER AIN+P+QGSAAD+   AM+++    
Sbjct: 763  LAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSEL 822

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              ++L  K++LQ+HDE++ + PSE  ++ + +V E M +       L V L  DA    N
Sbjct: 823  ERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQA----AQLDVPLIADANWGHN 878

Query: 1119 WYSAK 1123
            WY  K
Sbjct: 879  WYEVK 883


>gi|302191203|ref|ZP_07267457.1| DNA polymerase I [Lactobacillus iners AB-1]
          Length = 883

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 170/305 (55%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
            +G++H   L   T TGRLS+  PNLQN P   ++  +IR+AF+    +S L   DY Q+E
Sbjct: 605  DGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVE 664

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+++ K+ML+AFK G D H+ TAM ++  + N  E                PL+ 
Sbjct: 665  LRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFG-LSNLDEV--------------TPLM- 708

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GLA++  +S +EA+  ++ ++ +  ++  + +A  K
Sbjct: 709  ------RRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVK 762

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R   +  T++ R R  P I +   + R+  ER AIN+P+QGSAAD+   AM+++    
Sbjct: 763  LAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSEL 822

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              ++L  K++LQ+HDE++ + PSE  ++ + +V E M +       L V L  DA    N
Sbjct: 823  ERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQA----AQLDVPLIADANWGHN 878

Query: 1119 WYSAK 1123
            WY  K
Sbjct: 879  WYEVK 883


>gi|94971505|ref|YP_593553.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345]
 gi|94553555|gb|ABF43479.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345]
          Length = 929

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 159/300 (53%), Gaps = 27/300 (9%)

Query: 821  NGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GR+H +     T TGRLS+  PNLQN P   +   +IR AF+A  GN L+ ADY Q+EL
Sbjct: 652  TGRLHTTFAQAATSTGRLSSVNPNLQNIPIRTELGREIRAAFVAEKGNVLLAADYSQIEL 711

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAH +  + ++DA+    D H+ TA  ++                     PP  ++ D
Sbjct: 712  RLLAHFSQDRLLVDAYNNDRDIHALTASEVF-------------------GVPP--MMID 750

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
            A    RR+AK +NF I YG +P GL++   +  +E+K+ ++ ++     V  W  +  ++
Sbjct: 751  A--EHRRRAKAVNFGIVYGISPFGLSQQLGIDTKESKRYIESYFERYSGVREWLNSVLEQ 808

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
             R D  V TL GR R  P I S   + R   ER A NTP+QG+AAD+   AM+ I ++  
Sbjct: 809  VRKDEKVSTLFGRIRPIPDIHSRNPNLRGFAERTATNTPLQGTAADLIKLAMIRIHRDLI 868

Query: 1060 LKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             ++L  ++LLQVHDE++ E P    E  +A+V + M    N    L V L VD    +NW
Sbjct: 869  ERKLKTRMLLQVHDELVFEVPQAEVEEVRALVQDRME---NVHPELTVPLKVDVGVGKNW 925


>gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301]
 gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301]
          Length = 892

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 155/301 (51%), Gaps = 28/301 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S +   T TGRLS+  PNLQN P    +  +IR+AFIA PG +LI ADY Q+ELR+
Sbjct: 618  RVHTSFSQAITTTGRLSSNEPNLQNIPIRTSEGARIRRAFIAAPGKALISADYSQIELRL 677

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+  ++ ++F  G D H+RTA  ++             L   G D    P++    
Sbjct: 678  LAHVADIPALKESFAKGEDIHARTAAEVFG------------LPMEGMD----PMV---- 717

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLAR   +   EAK+ +D ++    E+  +     + +R
Sbjct: 718  ---RRRAKAINFGIIYGISAFGLARQLGIENSEAKRFIDAYFARYPEIRRYMNETAEFAR 774

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T  GR    P I     ++R + ER AIN P+QG AAD+   AM+ +    R  
Sbjct: 775  THGYVLTPFGRRCYVPGITEKNPARRGYAERQAINAPLQGGAADIIKRAMVRLPAAIRDA 834

Query: 1062 ELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYS 1121
             L   +LLQVHDE++ E P + AE    +    M     G  +L V L V+     NW  
Sbjct: 835  GLDAVMLLQVHDELVFEAPKDQAEATAKLACAVM----QGAASLSVPLLVETGIGANWSD 890

Query: 1122 A 1122
            A
Sbjct: 891  A 891



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 18/133 (13%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDL-----L 425
           A DTE   ++ +      H +++  S+ + P      G++  ++ L    G  L     L
Sbjct: 320 AIDTETTGLNPR------HAKLVGISVATAP------GRAA-YIPLGHEDGPQLPRPLAL 366

Query: 426 NEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLE 485
              AP   DPSI K++HN  FD HVLE  GL  +    DTM M+    + R   G   L 
Sbjct: 367 ERLAPVLADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGMDELS 426

Query: 486 ALTGDRKVMSEDK 498
           AL  D + +S D+
Sbjct: 427 ALHLDHRPISYDE 439


>gi|755588|gb|AAA85558.1| DNA polymerase [Geobacillus stearothermophilus]
          Length = 954

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/305 (37%), Positives = 168/305 (55%), Gaps = 29/305 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLE 878
             G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+E
Sbjct: 677  TGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIE 736

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+A   ++++AF+   D H++TAM+++ H+                        +
Sbjct: 737  LRVLAHIAEDDNLIEAFRRWLDIHTKTAMDIF-HVSE----------------------E 773

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + +   +
Sbjct: 774  DVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQ 833

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            E++   +V TLL R R  P I S   + R   ER A+NTP+QGSAAD+   AM+++S + 
Sbjct: 834  EAKQKGYVTTLLHRRRYLPDITSRNFNVRTFAERTAMNTPIQGSAADIIKKAMIDLSVSV 893

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            R + L  +LLLQ HDE+ILE P E       +V E M +       LRV L VD      
Sbjct: 894  REERLQARLLLQGHDELILEAPKEEIGRLCRLVPEVMEQAV----TLRVPLKVDYHYGPT 949

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 950  WYDAK 954


>gi|393782517|ref|ZP_10370700.1| DNA polymerase I [Bacteroides salyersiae CL02T12C01]
 gi|392672744|gb|EIY66210.1| DNA polymerase I [Bacteroides salyersiae CL02T12C01]
          Length = 935

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/351 (34%), Positives = 176/351 (50%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+       +  + E   +  L+  +I  LPL    ++ + GRVH S N   
Sbjct: 614  YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLL---INPRTGRVHTSFNQTV 670

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  +++  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M
Sbjct: 671  TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 730

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y   +  +E                    D  +  RRKAK  
Sbjct: 731  IDAFLSGYDIHAATAAKVY---KTNIE--------------------DVNSDMRRKAKTA 767

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ ++ ++    +V  + +   + +R   +V T+  
Sbjct: 768  NFGIIYGISVFGLAERMNVDRKEAKELIEGYFETYPQVKAYMDKSIEVAREKGYVETIFH 827

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV
Sbjct: 828  RKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKREGLKAKMILQV 887

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+    P E  E  +  V+E M K +     + V L  D    +NW  A
Sbjct: 888  HDELNFSVPIEERERVEQAVIEEMEKAY----KMHVPLKADCGWGKNWLEA 934


>gi|429727615|ref|ZP_19262379.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius VPI 4330]
 gi|429151919|gb|EKX94760.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius VPI 4330]
          Length = 909

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/364 (33%), Positives = 187/364 (51%), Gaps = 48/364 (13%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSL----ISNFILPLQGSNVSGKNGRV 824
            K   ++N ++    ++     D I+    V  + S     I+N I PL        +GR+
Sbjct: 585  KTGYSTNAEVLEKLRDKHPIIDMITDYRTVVKLKSTYVEGINNLINPL--------DGRI 636

Query: 825  HCSLN--INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRIL 882
            H S N  I T TGR+S+  PN+QN P       ++R+ F+A  G+ L+ ADY Q+ELR+L
Sbjct: 637  HSSFNQAIAT-TGRISSTDPNMQNIPVRTDLGRQLRRVFVAGQGSKLVDADYSQVELRVL 695

Query: 883  AHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFA 942
            A ++  + M++AF  G D H  TA  ++                       VP   D  +
Sbjct: 696  ADMSGDEDMIEAFDRGVDIHRNTASQVFG----------------------VPF--DEVS 731

Query: 943  SE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
            +E R  AK +NF I YGK+  GLA+D  +S+  AK+ +D ++    ++  + +    ++ 
Sbjct: 732  AELRSAAKAVNFGIIYGKSDFGLAKDLDISIARAKEYIDNYFARFPKIKGFMDHIVSDAE 791

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +  T+ GR R  P IKS    ++N   RAA+N P+QGSAAD+   AM+ +  + RL+
Sbjct: 792  EKGYSTTIFGRRRYIPEIKSSNFVEKNRGIRAAMNAPIQGSAADIIKIAMVNV--HNRLE 849

Query: 1062 ELGWK--LLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            E G K  L+LQVHDE+I+E P E  E  + ++ E M    N K NL VDL+V      +W
Sbjct: 850  EEGLKSNLILQVHDELIVESPIEEVERVRELLKEEMENAVNLKVNLDVDLNV----GDSW 905

Query: 1120 YSAK 1123
            Y  K
Sbjct: 906  YETK 909


>gi|317154192|ref|YP_004122240.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
 gi|316944443|gb|ADU63494.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
          Length = 887

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/332 (33%), Positives = 169/332 (50%), Gaps = 30/332 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            +  + E   ++ L S ++ PL    + G++ R+H   N + T TGRLS+ +PNLQN P  
Sbjct: 584  VEDILEYRMLEKLRSTYLEPL--PKLVGEDSRLHTHFNQLATATGRLSSSQPNLQNIPIR 641

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
             K   ++R  FIA PG  L  ADY Q+ELR+LAH +   +++DAF+   D H+RTA  + 
Sbjct: 642  GKHGPRMRACFIAGPGAMLAAADYSQIELRVLAHFSGDPALIDAFRNDEDIHTRTAALL- 700

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                               DK P    +D  A ERR AK +NF + YG  P  LAR+  +
Sbjct: 701  ------------------TDKQP----QDVLADERRNAKTINFGLIYGMGPQKLARELDI 738

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
            +V +AK+ ++ ++++   +  + +   K++     V TL GR R  P + S      +  
Sbjct: 739  TVNQAKEFIERYFDKLATLKAYYDTIVKDAESHGFVTTLAGRRRLLPELHSRNTQLVSQA 798

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAI 1090
             R A+NT +QGSAAD+   AM+   K+  L  LG  ++LQVHDE+I+E P  S   A   
Sbjct: 799  RRQAVNTVIQGSAADIIKMAMVAAHKDKDLAALGAHVILQVHDELIIEAPEASIRPAG-- 856

Query: 1091 VVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
              E +        +L V L VD    + W  A
Sbjct: 857  --ERLKTIMQSVADLAVPLKVDLGLGRTWAEA 886


>gi|170739017|ref|YP_001767672.1| DNA polymerase I [Methylobacterium sp. 4-46]
 gi|168193291|gb|ACA15238.1| DNA polymerase I [Methylobacterium sp. 4-46]
          Length = 1016

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 154/301 (51%), Gaps = 24/301 (7%)

Query: 823  RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  +  T TGRLS+  PNLQN P   ++  +IRQAF+A  G+ LI ADY Q+ELR+
Sbjct: 738  RVHTSFALAATTTGRLSSSDPNLQNIPIRTEEGRRIRQAFVADAGHQLISADYSQIELRL 797

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+      V  G++  +                
Sbjct: 798  LAHMADIPQLRQAFADGLDIHAATASAMF-----GVPLGEMTPDL--------------- 837

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E  KK  R
Sbjct: 838  ---RRRAKTINFGIIYGISAFGLADRLGIPQGEASAFIKQYFERFPGIRAYIEDTKKACR 894

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V TL GR   +P I+S    +R  +ER AIN P+QG+AAD+   AM+ +       
Sbjct: 895  DKGYVTTLFGRVCHYPQIRSNNPQERASVERQAINAPIQGTAADIIRRAMVRMEGALAGA 954

Query: 1062 ELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYS 1121
             L  ++LLQVHDE++ E P +    A  I+   M +       L V L+V+AK A NW  
Sbjct: 955  GLTTRMLLQVHDELVFEAPQDEVARALPIIARVMEEAPQPAVRLTVPLAVEAKAAANWQE 1014

Query: 1122 A 1122
            A
Sbjct: 1015 A 1015


>gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
 gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
          Length = 945

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/315 (36%), Positives = 166/315 (52%), Gaps = 32/315 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ ++GRVH S +  N  TGRLS+  PNLQN P   ++  +IR AFIA  G  
Sbjct: 660  LPLM---VNAQSGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAQEGKK 716

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF  G D H  TA  ++      V+  +V  E   
Sbjct: 717  VLAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVF-----GVDFSEVTTE--- 768

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                           +RR+AK +NF + YG +  GLAR   +   EA+K +D +++    
Sbjct: 769  ---------------QRRRAKAVNFGLIYGMSAFGLARQLDIPRGEAQKYIDTYFDRYPG 813

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  + E+    +V TL GR    PAIK     +R   ERAAIN P+QG+AAD+  
Sbjct: 814  VLKYMEDTRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIK 873

Query: 1049 CAMLEISKNARLKELG-WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRV 1107
             AM+ I+     +  G   +++QVHDE++ E  S+ AE  K  + + M+       +L V
Sbjct: 874  KAMINIASWIESETHGEITMIMQVHDELVFEVDSDKAEALKEQICKMMADAV----SLDV 929

Query: 1108 DLSVDAKCAQNWYSA 1122
            +L  +     NW  A
Sbjct: 930  ELLAEGGIGDNWEQA 944



 Score = 47.8 bits (112), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 144/363 (39%), Gaps = 87/363 (23%)

Query: 317 GQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEV 376
           G + ++S+N   E+ E++   + + Y  ++  +   A  K +  LT   K  + A DTE 
Sbjct: 322 GSSAQSSDNSADEE-EVVPQAIDAEYETILTHE---ALDKWIEQLT---KADLIAIDTET 374

Query: 377 AKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGR----DLLNEFAPFF 432
             +D      V     I F++  G  A        +  D LD   +    + + +  P  
Sbjct: 375 TSLDYMTAKLVG----ISFAVEVGKAAYL-----PLAHDYLDAPEQLDFDEAIAKLKPLL 425

Query: 433 EDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRK 492
           EDP +KKV  N  +D  +  N G+K+ G   DTM  + +++S                  
Sbjct: 426 EDPKLKKVGQNLKYDISIFANVGIKLQGVAFDTMLESYVFNSVA---------------- 469

Query: 493 VMSEDKKAYQKDMSKGNTDE---GFMG--KISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
                        SK N D+    ++G   IS ++I G+   +   +   + T AP    
Sbjct: 470 -------------SKHNMDDLALKYLGHKNISFEEIAGKGAKQLTFNQIDLETAAP---- 512

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFG 606
                     Y+A D+  TL+L++ L        W +L+ +P     +   + +   P  
Sbjct: 513 ----------YAAEDADITLRLHQHL--------WARLEKEP----KLASVFTDIELPLV 550

Query: 607 EILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQ 666
           ++L K+E +G+L+D   L +        QE A++  +          +  N+ S  QL+ 
Sbjct: 551 QVLSKIERQGVLIDSMMLGQ------QSQEIAISIDKLEQDAFEIAGETFNLSSPKQLQA 604

Query: 667 LLF 669
           L F
Sbjct: 605 LFF 607


>gi|386289429|ref|ZP_10066559.1| DNA polymerase I [gamma proteobacterium BDW918]
 gi|385277492|gb|EIF41474.1| DNA polymerase I [gamma proteobacterium BDW918]
          Length = 894

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/311 (35%), Positives = 158/311 (50%), Gaps = 31/311 (9%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPLQ   +  K GR+H S +     TGRLS+  PNLQN P    +  +IRQAFIA PG  
Sbjct: 610  LPLQ---IDPKTGRIHTSYHQAVAATGRLSSSDPNLQNIPIRSAEGRRIRQAFIAPPGYV 666

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  + ++DAF  G D H  TA  ++      V T +V  E   
Sbjct: 667  ILAADYSQIELRIMAHLSGDRGLVDAFSRGEDIHRATAAEVF-----GVSTDEVSDE--- 718

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                           +RR AK +NF + YG +  GLAR   +  +EA++ +DL++     
Sbjct: 719  ---------------QRRNAKAINFGLIYGMSAFGLARQLHLGRKEAQQYIDLYFERYPG 763

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + +  +  +    +V TL GR    P I +    +R   ER AIN P+QG+AAD+  
Sbjct: 764  VLRYMDETRVSASEKGYVETLFGRRLHLPEINARNGMRRQAAERTAINAPMQGTAADIIK 823

Query: 1049 CAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVD 1108
             AM+ + K      +  K+++QVHDE++LE      E  +  VV  M        +L V 
Sbjct: 824  RAMIAVDKYLSGSSVDAKMIMQVHDELVLEVAPADLETVQTEVVRLMM----AAADLAVP 879

Query: 1109 LSVDAKCAQNW 1119
            L V      NW
Sbjct: 880  LEVGVGVGANW 890



 Score = 60.5 bits (145), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 104/259 (40%), Gaps = 56/259 (21%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV-DLLDGGGRDLLNE 427
           + A DTE   ++  Q   V     + F++ +G  A    G   + V D LD     +L +
Sbjct: 317 IFAFDTETTSLNYMQARIVG----VSFAVKAGEAAYLPFGHDYLDVPDQLDEA--HVLAQ 370

Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEAL 487
             P  EDP + KV  N  +D +VL N+G+ + G H DTM  + + DS             
Sbjct: 371 LKPLLEDPELYKVGQNLKYDANVLLNHGIALRGIHDDTMLASYVLDS------------- 417

Query: 488 TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
           TG R  M      Y  D S  +  E   GK + +  F +  L++ G              
Sbjct: 418 TGSRHDMDTLALKYL-DHSTIHF-EDIAGKGAKQITFNQIALEQAG-------------- 461

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
                     Y+A D+  TL+LY++L  K+ +            + +   Y+    P   
Sbjct: 462 ---------PYAAEDADITLRLYQALLPKIQQH-----------EGLLAVYRNIELPLVP 501

Query: 608 ILVKMETEGMLVDREYLSE 626
           +L ++E  G  VDRE L +
Sbjct: 502 VLSRIERNGAYVDRELLGK 520


>gi|451345941|ref|YP_007444572.1| DNA polymerase I [Bacillus amyloliquefaciens IT-45]
 gi|449849699|gb|AGF26691.1| DNA polymerase I [Bacillus amyloliquefaciens IT-45]
          Length = 879

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 178/336 (52%), Gaps = 30/336 (8%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQP 848
            D ++ + +   I  L S +I  L      G + +VH   N   T+TGRLS+  PNLQN P
Sbjct: 572  DIVAYILQYRQIGKLQSTYIEGLLKVTRKGSH-KVHTRFNQALTQTGRLSSTDPNLQNIP 630

Query: 849  ALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
               ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF    D H++TAM
Sbjct: 631  IRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAM 690

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
            +++ H+    E  Q +                     RR+AK +NF I YG +  GL+++
Sbjct: 691  DVF-HVSED-EVTQAM---------------------RRQAKAVNFGIVYGISDYGLSQN 727

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ +EA   +D +      V  + E   +E++   +V TL+ R R  P + S   + R
Sbjct: 728  LGITRKEAGAFIDRYLESFPGVKAYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNLR 787

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVA 1087
            +  ER A+NTP+QGSAAD+   AM++++   + K L  +LLLQVHDE+I E P E  E+ 
Sbjct: 788  SFAERTAMNTPIQGSAADIIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIEIL 847

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + +V E M         L V L  D     +WY AK
Sbjct: 848  EKLVPEVMEHAL----ALDVPLKADYASGPSWYDAK 879


>gi|386856645|ref|YP_006260822.1| DNA polymerase I [Deinococcus gobiensis I-0]
 gi|380000174|gb|AFD25364.1| DNA polymerase I [Deinococcus gobiensis I-0]
          Length = 900

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/339 (34%), Positives = 174/339 (51%), Gaps = 31/339 (9%)

Query: 786  REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL-NINTETGRLSARRPNL 844
            R+    +  + E   +D L   ++ PL  + V+   GR+H +       TGRLS+  PNL
Sbjct: 592  RDEHPIVPLVLEFRELDKLRGTYLDPLP-NLVNPATGRLHTTFAQTAVATGRLSSLNPNL 650

Query: 845  QNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSR 904
            QN P       +IR+ FIA  G  L+ ADY Q+ELR+LAH+A+ K M  AF+ G D H R
Sbjct: 651  QNIPIRSDLGREIRKGFIADDGFVLVSADYSQIELRLLAHIADDKLMQQAFQEGADIHRR 710

Query: 905  TAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGL 964
            TA              QVL    G D+  V       A++RR AK +NF + YG +   L
Sbjct: 711  TA-------------SQVL----GLDEATV------TANQRRAAKTVNFGVLYGMSAHRL 747

Query: 965  ARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTR 1024
            + D  +   EA   ++ +++    +  + +A  +  R + +V TL GR R  P + +  R
Sbjct: 748  SNDLAIPFAEASGFIETYFSTYPGIRGYIDATLEFGRTNGYVETLYGRRRYVPELVASNR 807

Query: 1025 SQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESA 1084
            + R   ER A N P+QG+AAD+   AM+ + +  RL  LG +LLLQVHDE+++E P + A
Sbjct: 808  TLREAGERLAYNMPIQGTAADIIKYAMIRLDE--RLDALGARLLLQVHDELLIEAPEDRA 865

Query: 1085 EVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            E    +  E M     G  +L V L+V+     NWY  K
Sbjct: 866  EEVARVTREIM----EGAASLSVPLAVEVGIGPNWYDTK 900


>gi|313895447|ref|ZP_07829004.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
            F0430]
 gi|312976342|gb|EFR41800.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
            F0430]
          Length = 893

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 170/314 (54%), Gaps = 33/314 (10%)

Query: 814  GSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG---NSL 869
            G+ +    GRVH S N   T TGRLS+  PNLQN P   ++   +R  F   PG   ++L
Sbjct: 609  GALIRPDTGRVHTSFNQTVTATGRLSSSDPNLQNIPVRTEEGRAVRALF--EPGEGYDAL 666

Query: 870  IVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGE 929
            + ADY Q+ELRILAH++  ++++DAF  G D H+RTA  ++                   
Sbjct: 667  LSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTASEVFG------------------ 708

Query: 930  DKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEV 989
                VPL  +  +++RR AK +NF I YG +  GL++D  +  +EA   ++ ++     V
Sbjct: 709  ----VPL-AEVTSAQRRSAKAVNFGIVYGLSDYGLSQDLGIPRKEAAGYIERYFERYHGV 763

Query: 990  LTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMC 1049
              + +    ++  +  V TL GR R  PAI S    QR++ ER A+NTP+QG+AAD+   
Sbjct: 764  RAFLDRVVADAHTNGFVTTLYGRRRALPAINSRNFMQRSNAERMAMNTPIQGTAADLIKI 823

Query: 1050 AMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDL 1109
            AM+      R   +  ++LLQVHDE++LE  ++  E+A+  V E ++   +G   L V L
Sbjct: 824  AMIRADAALRAAGVKSRILLQVHDELVLEVVND--EIAQ--VTELLTAAMSGAAQLAVPL 879

Query: 1110 SVDAKCAQNWYSAK 1123
            +VD    +NW  AK
Sbjct: 880  AVDVHTGKNWAEAK 893


>gi|295098757|emb|CBK87846.1| DNA polymerase I [Eubacterium cylindroides T2-87]
          Length = 687

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 163/305 (53%), Gaps = 28/305 (9%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            ++ ++H   N   T+TGRLS+  PNLQN    ++   +IR+AF+A  G  L+ ADY Q+E
Sbjct: 410  QDSKIHTCFNQAMTQTGRLSSSDPNLQNISVRDEQGREIRKAFVAQKGYKLLSADYSQIE 469

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+AN   M++AFK G D H+RTA +++ H+               ED  P     
Sbjct: 470  LRMLAHMANETHMIEAFKEGADIHNRTASHIF-HVSQ-------------EDVTP----- 510

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG+T  GL++  K+S +EA + ++ ++     +  +      
Sbjct: 511  ----DMRRVAKTVNFGIVYGQTEFGLSQQLKISRKEAGEFMETYFASYPNIHQFMNQLID 566

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
              + + +V T+  R R  P I       R   +RAA+N P+QGSAAD+   AM+ + +  
Sbjct: 567  FCKENGYVETMFHRRRMIPEINDKNFMTREFGKRAAMNAPIQGSAADLIKIAMIRVDQAM 626

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            + K +  K+LLQ+HDE+I   P +  EV +A+V E M +       L+V L       Q+
Sbjct: 627  KEKNVKSKMLLQIHDELIFLVPDDELEVMQALVKEAMEQAM----ELKVPLKASINFGQS 682

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 683  WYEAK 687


>gi|320529716|ref|ZP_08030795.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
 gi|320138077|gb|EFW29980.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
          Length = 893

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 170/314 (54%), Gaps = 33/314 (10%)

Query: 814  GSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG---NSL 869
            G+ +    GRVH S N   T TGRLS+  PNLQN P   ++   +R  F   PG   ++L
Sbjct: 609  GALIRPDTGRVHTSFNQTVTATGRLSSSDPNLQNIPVRTEEGRAVRALF--EPGEGYDAL 666

Query: 870  IVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGE 929
            + ADY Q+ELRILAH++  ++++DAF  G D H+RTA  ++                   
Sbjct: 667  LSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTASEVFG------------------ 708

Query: 930  DKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEV 989
                VPL  +  +++RR AK +NF I YG +  GL++D  +  +EA   ++ ++     V
Sbjct: 709  ----VPL-AEVTSAQRRSAKAVNFGIVYGLSDYGLSQDLGIPRKEAAGYIERYFERYHGV 763

Query: 990  LTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMC 1049
              + +    ++  +  V TL GR R  PAI S    QR++ ER A+NTP+QG+AAD+   
Sbjct: 764  RAFLDRVVADAHTNGFVTTLYGRRRALPAINSRNFMQRSNAERMAMNTPIQGTAADLIKI 823

Query: 1050 AMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDL 1109
            AM+      R   +  ++LLQVHDE++LE  ++  E+A+  V E ++   +G   L V L
Sbjct: 824  AMIRADAALRAAGVKSRILLQVHDELVLEVVND--EIAQ--VTELLTAAMSGAAQLAVPL 879

Query: 1110 SVDAKCAQNWYSAK 1123
            +VD    +NW  AK
Sbjct: 880  AVDVHTGKNWAEAK 893


>gi|325912689|ref|ZP_08175072.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B]
 gi|325478110|gb|EGC81239.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B]
          Length = 883

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 170/305 (55%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
            +G++H   L   T TGRLS+  PNLQN P   ++  +IR+AF+    +S L   DY Q+E
Sbjct: 605  DGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVE 664

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+++ K+ML+AFK G D H+ TAM ++  + N  E                PL+ 
Sbjct: 665  LRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFG-LSNLDEV--------------TPLM- 708

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GLA++  +S +EA+  ++ ++ +  ++  + +A  K
Sbjct: 709  ------RRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVK 762

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R   +  T++ R R  P I +   + R+  ER AIN+P+QGSAAD+   AM+++    
Sbjct: 763  LAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSEL 822

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              ++L  K++LQ+HDE++ + PSE  ++ + +V E M +       L V L  DA    N
Sbjct: 823  ERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQA----AQLDVPLIADANWGHN 878

Query: 1119 WYSAK 1123
            WY  K
Sbjct: 879  WYEVK 883


>gi|423069710|ref|ZP_17058495.1| DNA polymerase I [Streptococcus intermedius F0395]
 gi|355364132|gb|EHG11866.1| DNA polymerase I [Streptococcus intermedius F0395]
          Length = 901

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 179/347 (51%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 582  AVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRYLQDLTQTGRLS 641

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + +++AF+
Sbjct: 642  SVDPNLQNIPIRLEQGRL-IRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDEHLIEAFR 700

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                   ++P     +D   ++RR AK +NF + 
Sbjct: 701  HGADIHTSTAMRVF-----------------NIERP-----EDVTPNDRRNAKAVNFGVV 738

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 739  YGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVETLFHRRREI 798

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         ++LLQVHDE++
Sbjct: 799  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALTDGNFKTRMLLQVHDEIV 858

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P+      K +V E M         L V L  D    + WY AK
Sbjct: 859  LEVPANELTAIKTLVKEIMESAI----ELSVPLKADESAGKTWYEAK 901


>gi|452975465|gb|EME75284.1| DNA polymerase I [Bacillus sonorensis L12]
          Length = 879

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 168/303 (55%), Gaps = 29/303 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 604  KVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSQKDWLIFAADYSQIELR 663

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH++  K++++AF    D H++TAM+++                H  ++   P +   
Sbjct: 664  VLAHISKDKNLIEAFTHDMDVHTKTAMDVF----------------HVSEEEVTPAM--- 704

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
                RR+AK +NF I YG +  GL+++  ++ +EA   ++ +++  Q V  + E   +E+
Sbjct: 705  ----RRQAKAVNFGIVYGISDYGLSQNLGITRKEAAAFIERYFHSFQGVKEYMEETVQEA 760

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P + S   + R+  ER A+NTP+QGSAAD+   AM+ +++  + 
Sbjct: 761  KQKGYVTTLLARRRYIPELTSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIAMAEKLKE 820

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
            K L  KLLLQVHDE+I E P E  +  + +V E M         L V L VD     +WY
Sbjct: 821  KNLQAKLLLQVHDELIFEAPEEEIKELEKLVPEVMENAL----QLDVPLKVDYSSGPSWY 876

Query: 1121 SAK 1123
             AK
Sbjct: 877  DAK 879


>gi|167644193|ref|YP_001681856.1| DNA polymerase I [Caulobacter sp. K31]
 gi|167346623|gb|ABZ69358.1| DNA polymerase I [Caulobacter sp. K31]
          Length = 973

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/310 (35%), Positives = 155/310 (50%), Gaps = 26/310 (8%)

Query: 812  LQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
            L  +   G   RVH S  +  T TGRLS+  PNLQN P   ++  KIR+AF+A PG  LI
Sbjct: 684  LIAAIAPGGGNRVHTSYALAATTTGRLSSSDPNLQNIPIRTEEGRKIRKAFVAAPGKVLI 743

Query: 871  VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
             ADY Q+ELR+LAH+ +   +  AF+ G D H+ TA  M+                    
Sbjct: 744  SADYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMFN------------------- 784

Query: 931  KPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEV 989
               VP+  +   SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +
Sbjct: 785  ---VPI--EGMPSEVRRRAKAINFGIVYGISAFGLANQLSIPQGEAGAYIKTYFERFPGI 839

Query: 990  LTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMC 1049
              + EA K   R   +V T+ GR    P I   + + R   ERAAIN P+QG+AADV   
Sbjct: 840  QAYMEATKAFVREHGYVTTIFGRKINIPDIGGKSVAHRQFAERAAINAPIQGAAADVMRR 899

Query: 1050 AMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDL 1109
            AM+ +    +   L  ++LLQVHDE++ E P   A+    +  E M         + V L
Sbjct: 900  AMVRMPGALKAAGLSSRMLLQVHDELVFEAPEAEAQATIDVAREVMQGAAAPAVTISVPL 959

Query: 1110 SVDAKCAQNW 1119
            +V+A+ A NW
Sbjct: 960  TVEARAAANW 969


>gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer ATCC 11845 = DSM 15868]
 gi|383485028|ref|YP_005393940.1| DNA polymerase i [Riemerella anatipestifer ATCC 11845 = DSM 15868]
 gi|386322304|ref|YP_006018466.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
            [Riemerella anatipestifer RA-GD]
 gi|416111293|ref|ZP_11592550.1| DNA polymerase I [Riemerella anatipestifer RA-YM]
 gi|442315114|ref|YP_007356417.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
            [Riemerella anatipestifer RA-CH-2]
 gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer ATCC 11845 = DSM 15868]
 gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM]
 gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
            [Riemerella anatipestifer RA-GD]
 gi|380459713|gb|AFD55397.1| DNA polymerase i [Riemerella anatipestifer ATCC 11845 = DSM 15868]
 gi|441484037|gb|AGC40723.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
            [Riemerella anatipestifer RA-CH-2]
          Length = 935

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 174/336 (51%), Gaps = 33/336 (9%)

Query: 790  DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSL-NINTETGRLSARRPNLQN 846
            + I  + E   +  L S ++  LP Q   +S  +GRVH S       TGRL++  PNLQN
Sbjct: 629  EIIKLILEYRQLQKLKSTYVDALPNQ---ISPIDGRVHTSFAQTVAATGRLASNNPNLQN 685

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
             P   +   ++R AF+A  G+ ++ ADY Q+ELR++A ++  ++M+ AFK G D H+ TA
Sbjct: 686  IPIRTERGQQVRGAFVAPKGSKIVSADYSQIELRLIAEISGEETMIKAFKEGQDIHASTA 745

Query: 907  MNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLAR 966
              ++                   D P    L +   ++R +AK +NF I YG++   LA 
Sbjct: 746  SKLF-------------------DVP----LNEVSKTQRSQAKTVNFGIIYGQSAFALAD 782

Query: 967  DWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQ 1026
               +S  +AK+ +D +Y    ++  +   + + +R   +V T++GR R    I S     
Sbjct: 783  QTGLSRTDAKQLIDSYYETYPKLKAFMTEQVQVARKKGYVETIMGRKRHLKDINSNNFVV 842

Query: 1027 RNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEV 1086
            R H ER A+N P+QGSAAD+   AM++I    + + L  K+LLQVHDE++ E P+E  EV
Sbjct: 843  RGHAERNAVNAPIQGSAADIIKLAMIKIDSEIKAQGLKTKMLLQVHDELVFEVPNEEIEV 902

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            A  ++ + M   ++ K    V L  +     NW  A
Sbjct: 903  ATTLIKQEMETAYSTK----VPLLTEVGVGDNWLEA 934



 Score = 47.8 bits (112), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
           ++  F PFFE  SI K+ HN  +D  VL NYG++V+G   DTM    L +   R
Sbjct: 408 IVERFRPFFEKESILKIAHNLKYDYKVLLNYGIEVTGNLFDTMIAHYLLNPDGR 461


>gi|410629263|ref|ZP_11339967.1| DNA polymerase I [Glaciecola mesophila KMM 241]
 gi|410151059|dbj|GAC26736.1| DNA polymerase I [Glaciecola mesophila KMM 241]
          Length = 928

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/310 (35%), Positives = 169/310 (54%), Gaps = 33/310 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ ++GRVH S +   T TGRLS+  PNLQN P   +   ++RQAFIA PG  ++ ADY 
Sbjct: 647  INPRSGRVHTSYHQAITATGRLSSTEPNLQNIPIRTEQGRRVRQAFIARPGYKIVAADYS 706

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  + +L AF  G D H+ TA  ++ +I                      
Sbjct: 707  QIELRIMAHLSQDEGLLKAFSQGKDIHTATAAEVF-NIS--------------------- 744

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             L D    +RR AK +NF + YG +  GL++   VS  +A+  +DL++     VL + E 
Sbjct: 745  -LTDVTTEQRRNAKAINFGLIYGMSAFGLSKQLNVSRHDAQHYMDLYFERYPGVLKYMED 803

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +  ++ + +V T+ GR    P I +    +R   ERAAIN P+QG+AAD+   AML++ 
Sbjct: 804  SRIVAKENGYVSTVFGRRLYLPEINASNGLRRKGAERAAINAPMQGTAADIIKKAMLKV- 862

Query: 1056 KNARLKEL---GWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
             +A +  L     ++++QVHDE+I E   +S E  K+ +V+ M K      +L V L V+
Sbjct: 863  -DAWIDTLPSDQTRMIMQVHDELIFEIKEQSVESDKSTIVDLMEKAV----SLDVPLIVE 917

Query: 1113 AKCAQNWYSA 1122
            A   +NW  A
Sbjct: 918  AGVGENWDQA 927


>gi|222151604|ref|YP_002560760.1| DNA polymerase I [Macrococcus caseolyticus JCSC5402]
 gi|222120729|dbj|BAH18064.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402]
          Length = 875

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/326 (34%), Positives = 168/326 (51%), Gaps = 31/326 (9%)

Query: 800  SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIR 858
            ++  L S ++  LQ   + G + ++H   N +  +TGRLS+  PNLQN P    +  KIR
Sbjct: 579  TLSKLQSTYVEGLQ--KLIGDDDKIHTRFNQVIAQTGRLSSIDPNLQNIPVRLDEGRKIR 636

Query: 859  QAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAV 917
            +AF+    NS+I  ADY Q+ELR+LAH+   K ML+AF  G D H++TAM ++   R  V
Sbjct: 637  KAFVPSEPNSVIFAADYSQIELRVLAHITGDKGMLEAFNQGIDIHTKTAMKVFNVEREEV 696

Query: 918  ETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKK 977
             +                         RR+AK +NF I YG +  GL++   ++ ++A+ 
Sbjct: 697  TSDM-----------------------RRQAKAVNFGIVYGISDYGLSQSLGITRKDAQA 733

Query: 978  TVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINT 1037
             +D +     +V  +     +E++   +V TLL R R  P I S   + R   ER A+NT
Sbjct: 734  FIDNYLESFPDVKAYMHDIIQEAKQQGYVTTLLNRRRYIPDITSRNFNLRGFAERTAMNT 793

Query: 1038 PVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSK 1097
            P+QGSAAD+   AM+  ++  +  +   KLLLQVHDE+I E P +  E     V   M  
Sbjct: 794  PIQGSAADIIKLAMVHYNEQVKETDFKAKLLLQVHDELIFEVPKDELEAFSLFVKHVMEN 853

Query: 1098 PFNGKNNLRVDLSVDAKCAQNWYSAK 1123
                   L+V L V+    ++WY AK
Sbjct: 854  AL----ELKVPLEVEYDSGESWYEAK 875


>gi|378581671|ref|ZP_09830315.1| DNA polymerase I [Pantoea stewartii subsp. stewartii DC283]
 gi|377815585|gb|EHT98696.1| DNA polymerase I [Pantoea stewartii subsp. stewartii DC283]
          Length = 927

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/317 (37%), Positives = 165/317 (52%), Gaps = 36/317 (11%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + V+G   RVH S +   T TGRLS+  PNLQN P    +  +IRQAF+A  GN 
Sbjct: 642  LPLMINPVTG---RVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNR 698

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +LDAF  G D H  TA  ++                  
Sbjct: 699  IVAADYSQIELRIMAHLSQDKGLLDAFSQGEDIHRATAAEVF------------------ 740

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                 VPL K     +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 741  ----GVPLSK-VTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 795

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++ +  + +V TL GR    P IKS    +R   ERAAIN P+QG+AAD+  
Sbjct: 796  VLRYMENTRQLAASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIK 855

Query: 1049 CAMLEISKNARLKEL---GWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNL 1105
             AM  I+ +  L+E      K+++QVHDE++ E   E+ E A   +   M     G   L
Sbjct: 856  RAM--IAVDNWLQEQRSDAVKMIMQVHDELVFEIKEEAVEAASKQIRTLM----EGSMAL 909

Query: 1106 RVDLSVDAKCAQNWYSA 1122
             V L V+     NW  A
Sbjct: 910  DVPLLVEVGVGDNWEQA 926



 Score = 48.1 bits (113), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 110/261 (42%), Gaps = 68/261 (26%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L +  P  EDP + KV  N  +D  VL+NY ++++G   DTM  + + +S     G + 
Sbjct: 399 VLAQLKPLLEDPDVSKVGQNLKYDRGVLKNYDIELAGIKYDTMLESYILNS---VVGKHD 455

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L+   + ++     +++   KG     F  +I++                       
Sbjct: 456 MDSLSA--RWLNHKTVTFEEIAGKGKNQLTF-NQIAL----------------------- 489

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
                    E    Y+A D+  TL+L+       L+M  +L+ +  P K     +++   
Sbjct: 490 ---------EQAAHYAAEDADVTLQLH-------LKMWPELEKEAGPKK----VFEQIEM 529

Query: 604 PFGEILVKMETEGMLVDREYLSE-----IEKVARAEQEAAVNRFRKWASKHCPDAKYMNV 658
           P   ++ ++E  G+L+D+  L++       ++A  E+EA           H    +  N+
Sbjct: 530 PLLRVISRIERNGVLIDQAILAQHSKELTARLAELEREA-----------HELAGEPFNL 578

Query: 659 GSDTQLRQLLF---GGKPNSK 676
            S  QL+ +LF   G KP  K
Sbjct: 579 SSTKQLQVILFEKQGIKPTKK 599


>gi|392399288|ref|YP_006435889.1| DNA polymerase I [Flexibacter litoralis DSM 6794]
 gi|390530366|gb|AFM06096.1| DNA polymerase I [Flexibacter litoralis DSM 6794]
          Length = 1002

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/315 (34%), Positives = 164/315 (52%), Gaps = 32/315 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    +S K+ +VH S N   T TGRLS+  PNLQN P   +   ++R+AFI    N 
Sbjct: 717  LPLL---LSSKDNKVHTSFNQAVTSTGRLSSTNPNLQNIPIRTERGREVRKAFIPSDENH 773

Query: 869  LIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH 927
            +++A DY Q+ELR++A  A   +M++AFK   D H+ TA  ++          +V +E  
Sbjct: 774  VLLAVDYSQIELRLMASFAEDPTMIEAFKNNRDIHTATAAKIF----------KVTIE-- 821

Query: 928  GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
                       D     RR AK  NF I YG + +GL +   +   EAKK +D ++ E  
Sbjct: 822  -----------DVTPEMRRSAKTANFGIIYGVSAMGLGQRLNIKTTEAKKLIDSYFAEFS 870

Query: 988  EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
             +  + +    E+R +  V TLLGR R    I S   +QR   ER A+N P+QG+AAD+ 
Sbjct: 871  SIKNYMDKIINEARDNESVQTLLGRKRPLRDINSRNMTQRGFAERNAVNMPIQGTAADII 930

Query: 1048 MCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRV 1107
              AM+++ +      L   ++LQVHDE++ + P    E+ K  ++E MSK +     + V
Sbjct: 931  KLAMVKVQEYLEENNLKTTMVLQVHDELVFDVPKAELEIVKPKIMEIMSKTY----QIDV 986

Query: 1108 DLSVDAKCAQNWYSA 1122
             L V+A   QNW  A
Sbjct: 987  PLDVEAGIGQNWLEA 1001



 Score = 48.5 bits (114), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 103/249 (41%), Gaps = 56/249 (22%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           +++LNEF    E+P I K+  N  +D  +   YG+++ G   DTM    + +   R    
Sbjct: 467 KNILNEFRSVLENPKILKIGQNIKYDYQIFYKYGIELKGQFFDTMLAHYVLEPELRHNMD 526

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
           Y  + +             YQ               IS  +I G  K        KI T+
Sbjct: 527 YLAQTILD-----------YQ--------------TISYSEIVGTGK--------KIKTM 553

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG-KSMFDFYQE 600
           A       E +E+ ++Y+A D+  TL+    LK KL   S++L+ +   G KS+F    +
Sbjct: 554 ADF-----EPKEI-LNYAAEDADITLR----LKNKL---SFELEKEENKGLKSVF---YD 597

Query: 601 YWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
              P   +L K+E  GM +D + L+E       + E       + A +        N+ S
Sbjct: 598 IEIPLVSVLAKIEMNGMNIDTKALAEFSIELGKDVEVVEKEIYQIAGEE------FNIAS 651

Query: 661 DTQLRQLLF 669
             QL ++LF
Sbjct: 652 PKQLGEILF 660


>gi|345017321|ref|YP_004819674.1| 5'-3' exonuclease [Thermoanaerobacter wiegelii Rt8.B1]
 gi|344032664|gb|AEM78390.1| LOW QUALITY PROTEIN: 5'-3' exonuclease, resolvase-like
            domain-containing protein [Thermoanaerobacter wiegelii
            Rt8.B1]
          Length = 872

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/354 (33%), Positives = 188/354 (53%), Gaps = 41/354 (11%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI---LPLQGSNVSGKNGRVHCSL-NI 830
            ++T+ E  E      D +S + E   +  L S +I   LPL       +N RVH +   +
Sbjct: 551  YSTDSEVLEQLVPYNDVVSDIIEYRQLTKLKSTYIDGFLPLMD-----ENNRVHSNFKQM 605

Query: 831  NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCK 889
             T TGR+S+  PNLQN P  E+   +IR+AFI    +  IV ADY Q+ELR+LAH++  +
Sbjct: 606  VTATGRISSTEPNLQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDE 665

Query: 890  SMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAK 949
             ++++F    D H RTA  ++                       VP+ K      RR AK
Sbjct: 666  KLIESFMNNEDIHLRTAAEVFK----------------------VPMEK-VTPEMRRAAK 702

Query: 950  MLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTL 1009
             +NF I YG +  GL+RD K+S +EAK+ ++ ++   + V  + E   + ++ + +V T+
Sbjct: 703  AVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTI 762

Query: 1010 LGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLL 1069
            + R R  P I S   +QR+  ER A+N P+QGSAAD+   AM+++ ++ +  +L  +L+L
Sbjct: 763  MNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLIL 822

Query: 1070 QVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            QVHDE++++   +  E+ K I+ E M         L+V L V+     NW+ AK
Sbjct: 823  QVHDELVVDTYKDEVEIVKKILKENMENVI----KLKVPLVVEIGIGPNWFLAK 872


>gi|410584031|ref|ZP_11321136.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
 gi|410504893|gb|EKP94403.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
          Length = 1072

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/350 (33%), Positives = 179/350 (51%), Gaps = 40/350 (11%)

Query: 779  FATEQEAREACDAISALCE-VCSIDSLISNFILPLQGSNVSG------KNGRVHCSLNIN 831
            ++T+ E  E   A   + E V    SL+      LQG+ V G       +GR+H +    
Sbjct: 746  YSTDAEVLETLAARHPIAELVLEYRSLVK-----LQGTYVDGLAEHIGPDGRIHTTFQQT 800

Query: 832  TE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKS 890
               TGRLS+ +PNLQN P  ++    +R+AF+A PG+ L+ ADY Q+ELR+LAH +    
Sbjct: 801  VAATGRLSSTQPNLQNIPIRDEPGRSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDPG 860

Query: 891  MLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKM 950
            +++AF  G D H+RTA  ++                       VPL +     +RR AK 
Sbjct: 861  LVEAFAQGQDVHARTASEIFG----------------------VPL-EQVTPEQRRVAKA 897

Query: 951  LNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLL 1010
            +NF +AYG+T  GLAR  ++   +A++ ++ ++     V  + E   + +R    V TLL
Sbjct: 898  VNFGLAYGQTDFGLARALRIDRADARRFMERYFERYPGVKRYMEETVRRARQQGEVTTLL 957

Query: 1011 GRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQ 1070
            GR R  P I+      R + ER AINTP+QG+AAD+   AM+ + +    + L  +++LQ
Sbjct: 958  GRRRPVPEIRHRVFHIRQNAERVAINTPIQGTAADIMKLAMIRVHRALAEEGLRARIVLQ 1017

Query: 1071 VHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
            VHDE+++E P        A++   M   F     L V L V+ K   NWY
Sbjct: 1018 VHDELLVEAPDAEVAAVAALLRREMEGAF----RLDVPLVVEVKSGANWY 1063


>gi|422861221|ref|ZP_16907863.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK330]
 gi|327467325|gb|EGF12825.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK330]
          Length = 880

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 178/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  +  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  +  ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQVHDE++LE P++     +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  QLVKETMEAAI----ELAVPLVADENAGQAWYEAK 880


>gi|390136443|pdb|4DQQ|A Chain A, Ternary Complex Of Bacillus Dna Polymerase I Large Fragment
            E658a, Dna Duplex, And Rctp (Paired With Dg Of Template)
            In Presence Of Mg2+
 gi|390136444|pdb|4DQQ|D Chain D, Ternary Complex Of Bacillus Dna Polymerase I Large Fragment
            E658a, Dna Duplex, And Rctp (Paired With Dg Of Template)
            In Presence Of Mg2+
 gi|390136449|pdb|4DQR|A Chain A, Ternary Complex Of Bacillus Dna Polymerase I Large Fragment
            E658a, Dna Duplex, And Rctp (Paired With Dg Of Template)
            In Presence Of Mn2+
 gi|390136450|pdb|4DQR|D Chain D, Ternary Complex Of Bacillus Dna Polymerase I Large Fragment
            E658a, Dna Duplex, And Rctp (Paired With Dg Of Template)
            In Presence Of Mn2+
 gi|390136520|pdb|4E0D|A Chain A, Binary Complex Of Bacillus Dna Polymerase I Large Fragment
            E658a And Duplex Dna
          Length = 592

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 170/305 (55%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ LR
Sbjct: 317  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIALR 376

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 377  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 413

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 414  TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 473

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 474  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 531

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L   LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 532  KEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 587

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 588  WYDAK 592


>gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32]
 gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32]
          Length = 922

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 168/329 (51%), Gaps = 34/329 (10%)

Query: 795  LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
            + E  S+  L S +   LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P   
Sbjct: 620  ILEHRSLSKLKSTYTDKLPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRT 676

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
            ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++ 
Sbjct: 677  EEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFG 736

Query: 912  HIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971
               +AV T Q                       RR+AK +NF + YG +  GLAR   + 
Sbjct: 737  TDFDAVTTEQ-----------------------RRRAKAVNFGLIYGMSAFGLARQLDIP 773

Query: 972  VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIE 1031
              EA+  +D ++     VL + E  +  +    +V TL GR    P I+     +R   E
Sbjct: 774  RNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQGAE 833

Query: 1032 RAAINTPVQGSAADVAMCAMLEISKNARLKELG-WKLLLQVHDEVILEGPSESAEVAKAI 1090
            RAAIN P+QG+AAD+   AM+ I++  + +  G   +++QVHDE++ E  ++ AE  K  
Sbjct: 834  RAAINAPMQGTAADIIKKAMINIAQWIKTETQGEIAMIMQVHDELVFEVDADKAETLKQK 893

Query: 1091 VVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            V E M+K       L V L  +A    NW
Sbjct: 894  VCELMAK----AAILDVALLAEAGIGDNW 918



 Score = 49.3 bits (116), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 131/343 (38%), Gaps = 95/343 (27%)

Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
           W+   K   L+ A DTE   +D      V     + F++ +G  A        +      
Sbjct: 335 WIAKLKQASLI-AVDTETTSLDYMVAELVG----MSFAVEAGKAAYLPLAHDYV------ 383

Query: 419 GGGRDLLNEFA-----PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
           G  + L  +FA     P  ED  +KKV  N  +D  VL N G+K+ G   DTM  + +++
Sbjct: 384 GAPQQLDKQFALEKLRPILEDDKVKKVGQNLKYDISVLANAGIKLQGVVFDTMLESYVFN 443

Query: 474 S--SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
           S  SR    G +++ L                    G+ + GF      +DI G+   + 
Sbjct: 444 SVASRHDMDGLAIKYL--------------------GHKNIGF------EDIAGKGAKQL 477

Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVP 590
             +   +   AP              Y+A D+  TL+L++ L        W +L+ +P  
Sbjct: 478 TFNQIPLEVAAP--------------YAAEDADITLRLHQHL--------WPRLEKEP-- 513

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSE--------IEKVARAEQEAAVNRF 642
              +   + E   P  ++L  +E +G+L+D   L +        I+ +     E A  +F
Sbjct: 514 --QLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIAGEKF 571

Query: 643 RKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSKDDSESLP 683
                         N+GS  QL+ L F   G P +K   +  P
Sbjct: 572 --------------NLGSPKQLQVLFFEKLGYPITKKTPKGAP 600


>gi|422877753|ref|ZP_16924223.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1056]
 gi|332358870|gb|EGJ36692.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1056]
          Length = 880

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 178/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  +  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KSEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  +  ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIQTYFERFPGIKNYMETIVREARDKAYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQVHDE++LE P++     +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  QLVKETMEAAI----ELAVPLVADENAGQTWYEAK 880


>gi|402303845|ref|ZP_10822929.1| DNA-directed DNA polymerase [Selenomonas sp. FOBRC9]
 gi|400377349|gb|EJP30228.1| DNA-directed DNA polymerase [Selenomonas sp. FOBRC9]
          Length = 893

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 170/314 (54%), Gaps = 33/314 (10%)

Query: 814  GSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG---NSL 869
            G+ +    GRVH S N   T TGRLS+  PNLQN P   ++   +R  F   PG   ++L
Sbjct: 609  GALIRPDTGRVHTSFNQTVTATGRLSSSDPNLQNIPVRTEEGRAVRALF--EPGEGYDAL 666

Query: 870  IVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGE 929
            + ADY Q+ELRILAH++  ++++DAF  G D H+RTA  ++                   
Sbjct: 667  LSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTASEVFG------------------ 708

Query: 930  DKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEV 989
                VPL  +  +++RR AK +NF I YG +  GL++D  +  +EA   ++ ++     V
Sbjct: 709  ----VPL-AEVTSAQRRSAKAVNFGIVYGLSDYGLSQDLGIPRKEAAGYIERYFERYHGV 763

Query: 990  LTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMC 1049
              + +    ++  +  V TL GR R  PAI S    QR++ ER A+NTP+QG+AAD+   
Sbjct: 764  RAFLDRVVADAHTNGFVTTLYGRRRALPAINSRNFMQRSNAERMAMNTPIQGTAADLIKI 823

Query: 1050 AMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDL 1109
            AM+      R   +  ++LLQVHDE++LE  ++  E+A+  V E ++   +G   L V L
Sbjct: 824  AMIRADAALRAAGVKSRILLQVHDELVLEVVND--EIAQ--VTELLTAAMSGAAQLAVPL 879

Query: 1110 SVDAKCAQNWYSAK 1123
            +VD    +NW  AK
Sbjct: 880  AVDVHTGKNWAEAK 893


>gi|392531515|ref|ZP_10278652.1| DNA polymerase I [Carnobacterium maltaromaticum ATCC 35586]
          Length = 886

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 167/309 (54%), Gaps = 28/309 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            ++G  G+VH   +   T+TGRLS+  PNLQN P   ++  KIRQAF+ +  G  +  +DY
Sbjct: 604  INGNTGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQAFVPSHEGWKIFASDY 663

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LA ++N + + +AF  G D HS TAM ++      +E  +             
Sbjct: 664  SQIELRVLADISNDQHLKEAFLEGQDIHSSTAMRVF-----GIEKAE------------- 705

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                D   + RR+AK +NF I YG +  GL+++  ++ +EA+  +D ++ +   V  +  
Sbjct: 706  ----DVTGNMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAQTFIDTYFEKYPGVKQYMS 761

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TL  R R    I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 762  DIVREAKDKGYVETLFHRRRFLKDINSRNFNLRSFAERTAMNTPIQGSAADIIKVAMIQM 821

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
             +  + + L  K+LLQVHDE+I E P E   + + +V E M         L V L VD+ 
Sbjct: 822  DRRLKAENLKTKMLLQVHDELIFEAPEEEIAILEKLVPEVMESAV----KLNVPLKVDSS 877

Query: 1115 CAQNWYSAK 1123
               +WY AK
Sbjct: 878  YGDSWYDAK 886


>gi|417848742|ref|ZP_12494674.1| putative DNA-directed DNA polymerase [Streptococcus mitis SK1080]
 gi|339457490|gb|EGP70057.1| putative DNA-directed DNA polymerase [Streptococcus mitis SK1080]
          Length = 877

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 181/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+   G+S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPVRLEQGRL-IRKAFVPEWGDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P     +D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----EDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQVHDE++
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGAYQTKMLLQVHDEIV 834

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P       K +V + M +       L V L  D      WY AK
Sbjct: 835  LEVPKSELVEMKKLVKQTMEEAI----QLSVPLIADENEGATWYEAK 877


>gi|384439822|ref|YP_005654546.1| DNA polymerase I, thermostable [Thermus sp. CCB_US3_UF1]
 gi|359290955|gb|AEV16472.1| DNA polymerase I, thermostable [Thermus sp. CCB_US3_UF1]
          Length = 833

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/339 (34%), Positives = 174/339 (51%), Gaps = 31/339 (9%)

Query: 786  REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNL 844
            REA   ++ + E   +  L S +I PL  + V  + GR+H   N   T TGRLS+  PNL
Sbjct: 524  REAHPIVARILEYRELTKLKSTYIDPLP-ALVHPRTGRLHTRFNQTATATGRLSSSDPNL 582

Query: 845  QNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSR 904
            QN P       +IR+AF+A  G  L+  DY Q+ELR+LAHL+  ++++  F+ G D H++
Sbjct: 583  QNIPVRTPLGQRIRRAFVAEEGWVLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTQ 642

Query: 905  TAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGL 964
            TA  M+     AV+                PL+       RR AK +NF + YG +   L
Sbjct: 643  TASWMFGVPPEAVD----------------PLM-------RRAAKTINFGVLYGMSAHRL 679

Query: 965  ARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTR 1024
            + +  +  EEA   ++ ++    +V  W E   +E R   +V TL GR R  P + +  +
Sbjct: 680  SGELAIPYEEAVAFIERYFQSYPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLNARVK 739

Query: 1025 SQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESA 1084
            S R   ER A N PVQG+AAD+   AM+ +     L  +G ++LLQVHDE++LE P E A
Sbjct: 740  SVREAAERMAFNMPVQGTAADLMKLAMVRLFPL--LPGVGARMLLQVHDELLLEAPKERA 797

Query: 1085 EVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            E    +  E M     G   L V L V+    ++W +AK
Sbjct: 798  EEVARLAREVM----EGVWPLAVPLEVEVGIGEDWLAAK 832


>gi|262281777|ref|ZP_06059546.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA]
 gi|262262231|gb|EEY80928.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA]
          Length = 880

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/335 (33%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  +  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +K      +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----------------GIEKT-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    +    ++LLQVHDE++LE P++     +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEENFKSRMLLQVHDEIVLEVPNDELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  QLVKETMEAAI----ELAVPLVADENAGQTWYEAK 880


>gi|78045179|ref|YP_360471.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997294|gb|ABB16193.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
          Length = 831

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/330 (34%), Positives = 174/330 (52%), Gaps = 35/330 (10%)

Query: 797  EVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPA-LEKDR 854
            ++  + S  ++ ++PL    ++ + G++H + N   T TGRL++  PNLQN P  LE  R
Sbjct: 534  QLMKLKSTYTDGLMPL----INERTGKLHTTFNQTGTLTGRLASSEPNLQNIPIRLELGR 589

Query: 855  YKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
             K+R+ FI  PG   IV ADY Q+ELR+LAH +    +++A++ G D H +TA  ++   
Sbjct: 590  -KLRKMFIPSPGYDYIVSADYSQIELRLLAHFSEEPKLIEAYQKGEDIHRKTASEVF--- 645

Query: 914  RNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVE 973
               V   +V  E                   R  AK +NF I YG +  GL RD K+  E
Sbjct: 646  --GVSLEEVTPEM------------------RAHAKSVNFGIVYGISDFGLGRDLKIPRE 685

Query: 974  EAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERA 1033
             A K +  ++    +V  + +   + +R   +V TL GR R  P + S  R+ +   ER 
Sbjct: 686  VAGKYIKNYFANYPKVREYLDELVRTAREKGYVTTLFGRRRYIPELSSKNRTVQGFGERT 745

Query: 1034 AINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVE 1093
            A+NTP+QGSAAD+   AM+ + K  + ++L  +LLL VHDE++LE P+E  E  KA+V  
Sbjct: 746  AMNTPLQGSAADIIKLAMINVEKELKARKLKSRLLLSVHDELVLEVPAEELEEVKALVKG 805

Query: 1094 CMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             M         L+V L  +    +NWY AK
Sbjct: 806  VMESVV----ELKVPLIAEVGAGKNWYEAK 831


>gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
 gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
          Length = 885

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 166/307 (54%), Gaps = 31/307 (10%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA-LEKDRYKIRQAFIA-VPGNSLIVAD 873
            V+ + G +H S N   T TGRLS+  PNLQN P  LE  R ++R+AF+   PG  L+ AD
Sbjct: 600  VNPRTGSLHTSFNQTVTATGRLSSSEPNLQNIPVRLELGR-RLRKAFVPHGPGRLLLAAD 658

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELRILAH++  ++M+ AF+ G D H+RTA  ++      V  G+V           
Sbjct: 659  YSQIELRILAHISGDEAMIAAFRRGEDIHARTAAEVF-----GVPLGEVT---------- 703

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                     + RR AK +NF I YG +  GL+RD  +S  EA   ++ ++   + V  + 
Sbjct: 704  --------PAMRRSAKAVNFGIVYGISDYGLSRDLGISRSEAHDYIERYFRRYRGVKAYL 755

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E     +R + +V TLLGR R  P + S  R+ R+  ER A+NTP+QG+AAD+   AM++
Sbjct: 756  EEIVARARQEGYVTTLLGRRRYLPDLFSSNRNVRSFGERTAMNTPIQGTAADIIKMAMVK 815

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            I +    +    +++LQVHDE+I + P +       +V + M         L+V L VD 
Sbjct: 816  IFRLLEAQYPAARMILQVHDELIFDVPDDDLPAVAGLVKDTMEHTL----ELQVPLQVDL 871

Query: 1114 KCAQNWY 1120
            K   NWY
Sbjct: 872  KAGPNWY 878


>gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205]
 gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205]
          Length = 923

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 167/341 (48%), Gaps = 29/341 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARR 841
            Q+ R     I  +     +  L+  +I  L    ++ + G +H S N   T TGRLS+  
Sbjct: 610  QQLRSKSPIIDEILNYRGLKKLLGTYIDALPKL-INSRTGHIHASFNQAITATGRLSSSD 668

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQN P  + D  +IR+ FI  PG     ADY Q+ELRI+AHL+   +M++AF+ G D 
Sbjct: 669  PNLQNIPVRDDDGKEIRRCFIPEPGCLFFSADYSQIELRIMAHLSQDPNMVEAFREGSDI 728

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TA  +                WH ED      +K+   ++R+KAK  NF I YG T 
Sbjct: 729  HAATAAKI----------------WH-ED------IKEVTDAQRKKAKTANFGIIYGITT 765

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA+   +   EAK+ ++ ++     V  + E  K+ +R   +  TL  R R  P I S
Sbjct: 766  FGLAQRMNIENREAKQIIEDYFRTFPGVQAYMEKAKEMAREKGYAETLFHRRRYLPDINS 825

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPS 1081
               + R   ER AIN P+QGS AD+   AM+ I    R + +  K+++QVHDE+      
Sbjct: 826  KNGTVRGFAERNAINAPIQGSEADIIKVAMIRIFNRFRAEGIRSKMIIQVHDELNFSVYP 885

Query: 1082 ESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            E  E  + IVVE M   +     L V L  DA    NW  A
Sbjct: 886  EEKEKVEKIVVEEMQNAY----QLSVPLVADAGWGNNWLEA 922



 Score = 48.5 bits (114), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 93/249 (37%), Gaps = 60/249 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           ++N F P +E+P I KV  N  +D  VL NYG+++ G   DTM    L          Y 
Sbjct: 396 IVNIFKPLYENPEILKVGQNIKYDYEVLINYGIEIQGKMFDTMLAHYLIQPELYHNMDYL 455

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
            E     + +  E+         KG   +      SM+D                  +AP
Sbjct: 456 AEVFLNYQTIHIEELIG-----PKGKNQK------SMRD------------------LAP 486

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            +  +         Y+A D+  TL+L   L+ KL E+  +            D +     
Sbjct: 487 SDIYE---------YAAEDADITLRLKNVLESKLKEIDCE------------DLFWNVEM 525

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
           P   +L  ME  G+ +D + L E         E   NR  +    H  +   +  N+ S 
Sbjct: 526 PLVPVLAHMEMTGVCIDTDTLKET-------SENLTNRLNE-IEHHIYELAGESFNIASP 577

Query: 662 TQLRQLLFG 670
            Q+ ++LFG
Sbjct: 578 RQVGEILFG 586


>gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1]
 gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1]
          Length = 922

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 168/329 (51%), Gaps = 34/329 (10%)

Query: 795  LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
            + E  S+  L S +   LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P   
Sbjct: 620  ILEHRSLSKLKSTYTDKLPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRT 676

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
            ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++ 
Sbjct: 677  EEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFG 736

Query: 912  HIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971
               +AV T Q                       RR+AK +NF + YG +  GLAR   + 
Sbjct: 737  TDFDAVTTEQ-----------------------RRRAKAVNFGLIYGMSAFGLARQLDIP 773

Query: 972  VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIE 1031
              EA+  +D ++     VL + E  +  +    +V TL GR    P I+     +R   E
Sbjct: 774  RNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQGAE 833

Query: 1032 RAAINTPVQGSAADVAMCAMLEISKNARLKELG-WKLLLQVHDEVILEGPSESAEVAKAI 1090
            RAAIN P+QG+AAD+   AM+ I++  + +  G   +++QVHDE++ E  ++ AE  K  
Sbjct: 834  RAAINAPMQGTAADIIKKAMINIAQWIKTETQGEIAMIMQVHDELVFEVDADKAETLKQK 893

Query: 1091 VVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            V E M+K       L V L  +A    NW
Sbjct: 894  VCELMAK----AAILDVALLAEAGIGDNW 918



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 131/343 (38%), Gaps = 95/343 (27%)

Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
           W+   K   L+ A DTE   +D      V     + F++ +G  A        +      
Sbjct: 335 WIAKLKQASLI-AVDTETTSLDYMVAELVG----MSFAVEAGKAAYLPLAHDYV------ 383

Query: 419 GGGRDLLNEFA-----PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
           G  + L  +FA     P  ED  +KKV  N  +D  VL N G+K+ G   DTM  + +++
Sbjct: 384 GAPQQLDKQFALEKLRPILEDDKVKKVGQNLKYDISVLANAGIKLQGVVFDTMLESYVFN 443

Query: 474 S--SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
           S  SR    G +L+ L                    G+ + GF      +DI G+   + 
Sbjct: 444 SVASRHDMDGLALKYL--------------------GHKNIGF------EDIAGKGAKQL 477

Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVP 590
             +   +   AP              Y+A D+  TL+L++ L        W +L+ +P  
Sbjct: 478 TFNQIPLEVAAP--------------YAAEDADITLRLHQHL--------WPRLEKEP-- 513

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSE--------IEKVARAEQEAAVNRF 642
              +   + E   P  ++L  +E +G+L+D   L +        I+ +     E A  +F
Sbjct: 514 --QLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIAGEKF 571

Query: 643 RKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSKDDSESLP 683
                         N+GS  QL+ L F   G P +K   +  P
Sbjct: 572 --------------NLGSPKQLQVLFFEKLGYPITKKTPKGAP 600


>gi|338983099|ref|ZP_08632330.1| DNA polymerase I [Acidiphilium sp. PM]
 gi|338207974|gb|EGO95880.1| DNA polymerase I [Acidiphilium sp. PM]
          Length = 915

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 155/301 (51%), Gaps = 28/301 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S +   T TGRLS+  PNLQN P    +  +IR+AFIA PG +LI ADY Q+ELR+
Sbjct: 641  RVHTSFSQAITTTGRLSSNEPNLQNIPIRTSEGARIRRAFIAAPGKALISADYSQIELRL 700

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+  ++ ++F  G D H+RTA  ++             L   G D    P++    
Sbjct: 701  LAHVADIPALKESFAKGEDIHARTAAEVFG------------LPMEGMD----PMV---- 740

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLAR   +   EAK+ +D ++    E+  +     + +R
Sbjct: 741  ---RRRAKAINFGIIYGISAFGLARQLGIENSEAKRFIDAYFARYPEIRRYMNETAEFAR 797

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T  GR    P I     ++R + ER AIN P+QG AAD+   AM+ +    R  
Sbjct: 798  THGYVLTPFGRRCYVPGITEKNPARRGYAERQAINAPLQGGAADIIKRAMVRLPAAIRDV 857

Query: 1062 ELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYS 1121
             L   +LLQVHDE++ E P + AE    +    M     G  +L V L V+     NW  
Sbjct: 858  GLDAVMLLQVHDELVFEAPKDQAEATAKLACAVM----QGAASLSVPLLVETGIGANWSD 913

Query: 1122 A 1122
            A
Sbjct: 914  A 914



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 18/133 (13%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDL-----L 425
           A DTE   ++ +      H +++  S+ + P      G++  ++ L    G  L     L
Sbjct: 343 AIDTETTGLNPR------HAKLVGISVATAP------GRAA-YIPLGHEVGPQLPRPLAL 389

Query: 426 NEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLE 485
              AP   DPSI K++HN  FD HVLE  GL  +    DTM M+    + R   G   L 
Sbjct: 390 ERLAPVLADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGMDELS 449

Query: 486 ALTGDRKVMSEDK 498
           AL  D + +S D+
Sbjct: 450 ALHLDHRPISYDE 462


>gi|386311837|ref|YP_006008002.1| DNA polymerase I [Shewanella putrefaciens 200]
 gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200]
          Length = 922

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 168/329 (51%), Gaps = 34/329 (10%)

Query: 795  LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
            + E  S+  L S +   LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P   
Sbjct: 620  ILEHRSLSKLKSTYTDKLPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRT 676

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
            ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++ 
Sbjct: 677  EEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFG 736

Query: 912  HIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971
               +AV T Q                       RR+AK +NF + YG +  GLAR   + 
Sbjct: 737  TDFDAVTTEQ-----------------------RRRAKAVNFGLIYGMSAFGLARQLDIP 773

Query: 972  VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIE 1031
              EA+  +D ++     VL + E  +  +    +V TL GR    P I+     +R   E
Sbjct: 774  RNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQGAE 833

Query: 1032 RAAINTPVQGSAADVAMCAMLEISKNARLKELG-WKLLLQVHDEVILEGPSESAEVAKAI 1090
            RAAIN P+QG+AAD+   AM+ I++  + +  G   +++QVHDE++ E  ++ AE  K  
Sbjct: 834  RAAINAPMQGTAADIIKKAMINIAQWIKTETQGEIAMIMQVHDELVFEVDADKAETLKQK 893

Query: 1091 VVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            V E M+K       L V L  +A    NW
Sbjct: 894  VCELMAK----AAILDVALLAEAGIGDNW 918



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 131/343 (38%), Gaps = 95/343 (27%)

Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
           W+   K   L+ A DTE   +D      V     + F++ +G  A        +      
Sbjct: 335 WIAKLKQASLI-AVDTETTSLDYMVAELVG----MSFAVEAGKAAYLPLAHDYV------ 383

Query: 419 GGGRDLLNEFA-----PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
           G  + L  +FA     P  ED  +KKV  N  +D  VL N G+K+ G   DTM  + +++
Sbjct: 384 GAPQQLDKQFALEKLRPILEDDKVKKVGQNLKYDISVLANAGIKLQGVVFDTMLESYVFN 443

Query: 474 S--SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
           S  SR    G +L+ L                    G+ + GF      +DI G+   + 
Sbjct: 444 SVASRHDMDGLALKYL--------------------GHKNIGF------EDIAGKGAKQL 477

Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVP 590
             +   +   AP              Y+A D+  TL+L++ L        W +L+ +P  
Sbjct: 478 TFNQIPLEVAAP--------------YAAEDADITLRLHQHL--------WPRLEKEP-- 513

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSE--------IEKVARAEQEAAVNRF 642
              +   + E   P  ++L  +E +G+L+D   L +        I+ +     E A  +F
Sbjct: 514 --QLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIAGEKF 571

Query: 643 RKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSKDDSESLP 683
                         N+GS  QL+ L F   G P +K   +  P
Sbjct: 572 --------------NLGSPKQLQVLFFEKLGYPITKKTPKGAP 600


>gi|410495790|ref|YP_006905636.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
            AC-2713]
 gi|410440950|emb|CCI63578.1| K02335 DNA polymerase I [Streptococcus dysgalactiae subsp.
            equisimilis AC-2713]
          Length = 834

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 180/347 (51%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 515  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQDLTQTGRLS 574

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 575  SVDPNLQNIPIRLEQGRL-IRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFN 633

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK       D  A++RR AK +NF I 
Sbjct: 634  EGADIHTSTAMRVF-----------------GIDKAA-----DVTANDRRNAKAVNFGIV 671

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 672  YGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL 731

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ +    +      K+LLQVHDE++
Sbjct: 732  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDNALQAGGFKAKMLLQVHDEIV 791

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P+      K +V E M        +L V L  D    Q+WY AK
Sbjct: 792  LEVPNTELAAVKKLVKETMEAAV----DLAVPLRADENAGQSWYEAK 834


>gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 976

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/304 (36%), Positives = 156/304 (51%), Gaps = 26/304 (8%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GRVH S + +   TGRLS+  PN+QN P    +  +IR AFIA  G  LI  DY Q+EL
Sbjct: 696  TGRVHTSFSMVGASTGRLSSSDPNVQNIPIRTSEGRQIRTAFIAAEGCKLISVDYSQIEL 755

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R++AH+A  +SM++AFK G D H+RTA  ++                       +PL  D
Sbjct: 756  RLVAHVAGEQSMIEAFKDGIDIHARTASEVFG----------------------IPL--D 791

Query: 940  AFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               SE RR+AK +NF I YG +  GLAR   +   EA+  +  ++     +  + E  K 
Sbjct: 792  QMDSETRRRAKAINFGIIYGISAFGLARQLSIPQGEARDYIASYFENFPGIRAYMERIKT 851

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            E+R D  V TL GR      +   + + R   ER AIN P+QGSAAD+   AM+ I    
Sbjct: 852  EAREDGFVETLFGRRIHITGMAGGSAAHRGFAERQAINAPIQGSAADIIKRAMIRIPPAL 911

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            +  ++   +LLQVHDE+I E P+  A+ A   +   M        +L+V L  +A  A +
Sbjct: 912  QAADIRADMLLQVHDELIFEAPAADADNAVKHITRIMEAAAAPVVDLKVPLVAEAGIADS 971

Query: 1119 WYSA 1122
            W  A
Sbjct: 972  WADA 975


>gi|288553689|ref|YP_003425624.1| DNA polymerase I [Bacillus pseudofirmus OF4]
 gi|288544849|gb|ADC48732.1| DNA polymerase I [Bacillus pseudofirmus OF4]
          Length = 875

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 162/303 (53%), Gaps = 29/303 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELR 880
            ++H   N   T+TGRLS+  PNLQN P   ++  KIR+AFI +  G  ++ ADY Q+ELR
Sbjct: 600  KIHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRKAFIPSEEGWKILAADYSQIELR 659

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A  + ++ AFK   D H++TAM+++ H+                        +D 
Sbjct: 660  VLAHIAQDEKLITAFKEDMDVHTKTAMDVF-HVSE----------------------EDV 696

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             +  RR AK +NF I YG +  GL++   ++ +EA K ++ +      V  + E   +E+
Sbjct: 697  TSMMRRSAKAVNFGIVYGISDYGLSQSLGITRKEAAKFIERYLASYPNVAEYMERIIEEA 756

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V TLL R R  P + S   +QR+  ER A+NTP+QG+AAD+   AM+E++     
Sbjct: 757  RENGYVSTLLNRRRYLPELTSRNFNQRSFAERTAMNTPIQGTAADIIKKAMVEMALRLEE 816

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
              L  +LLLQVHDE+I E P E  +    IV E M         L V L VD      WY
Sbjct: 817  ANLKSRLLLQVHDELIFEVPPEEVDEMMKIVPEVMENAV----ELAVPLKVDISAGDTWY 872

Query: 1121 SAK 1123
             AK
Sbjct: 873  DAK 875


>gi|308068368|ref|YP_003869973.1| DNA polymerase I [Paenibacillus polymyxa E681]
 gi|305857647|gb|ADM69435.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681]
          Length = 884

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/351 (32%), Positives = 184/351 (52%), Gaps = 34/351 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTE- 833
            ++T+ E  E      D +  + +  +I  L S ++  L    +SGK G+VH         
Sbjct: 562  YSTDAEVLEKLAPYHDIVQNILQYRTIAKLQSTYVEGLL-KEISGKTGKVHTYFRQTVAA 620

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSML 892
            TGRLS++ PNLQN P   ++  KIR+ F+ + PG S++ ADY Q+ELR+LA +++ + + 
Sbjct: 621  TGRLSSQFPNLQNIPIRLEEGRKIRKVFVPSEPGWSILAADYSQIELRVLADISDDERLK 680

Query: 893  DAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLN 952
            +AF    D H++TA +++      V++                         RR AK +N
Sbjct: 681  EAFVHDMDIHTKTASDVFGVAAEDVDSNM-----------------------RRSAKAVN 717

Query: 953  FSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGR 1012
            F I YG +  GL+++  ++ +EA + +D +++  Q V  + +   K+++ D +V TLL R
Sbjct: 718  FGIVYGISDYGLSQNLNITRKEAARFIDQYFDVFQGVRRYMDDIVKDAKRDGYVKTLLER 777

Query: 1013 ARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVH 1072
             R  P I +   + R+  ER A+NTP+QG+AAD+   AM+++ K  R + L  ++LLQVH
Sbjct: 778  RRYLPEINASNFNLRSFAERTAMNTPIQGTAADIIKLAMVQMDKVLRERNLRSRMLLQVH 837

Query: 1073 DEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            DE++ E P E  E  K +V   M         L V L  +     NWY AK
Sbjct: 838  DELVFEVPPEEMETMKELVPATMEAAL----ELAVPLKAEVSYGSNWYEAK 884


>gi|414083232|ref|YP_006991940.1| DNA polymerase I family protein [Carnobacterium maltaromaticum LMA28]
 gi|412996816|emb|CCO10625.1| DNA polymerase I family protein [Carnobacterium maltaromaticum LMA28]
          Length = 856

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 167/309 (54%), Gaps = 28/309 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            ++G  G+VH   +   T+TGRLS+  PNLQN P   ++  KIRQAF+ +  G  +  +DY
Sbjct: 574  INGNTGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQAFVPSHEGWKIFASDY 633

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LA ++N + + +AF  G D HS TAM ++      +E  +             
Sbjct: 634  SQIELRVLADISNDQHLKEAFLEGQDIHSSTAMRVF-----GIEKAE------------- 675

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                D   + RR+AK +NF I YG +  GL+++  ++ +EA+  +D ++ +   V  +  
Sbjct: 676  ----DVTGNMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAQTFIDTYFEKYPGVKQYMS 731

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TL  R R    I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 732  DIVREAKDKGYVETLFHRRRFLKDINSRNFNLRSFAERTAMNTPIQGSAADIIKVAMIQM 791

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
             +  + + L  K+LLQVHDE+I E P E   + + +V E M         L V L VD+ 
Sbjct: 792  DRRLKAENLKTKMLLQVHDELIFEAPEEEIAILEKLVPEVMESAV----KLNVPLKVDSS 847

Query: 1115 CAQNWYSAK 1123
               +WY AK
Sbjct: 848  YGDSWYDAK 856


>gi|325957304|ref|YP_004292716.1| DNA polymerase I [Lactobacillus acidophilus 30SC]
 gi|325333869|gb|ADZ07777.1| DNA polymerase I [Lactobacillus acidophilus 30SC]
          Length = 887

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 176/336 (52%), Gaps = 34/336 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            +S + +   I  + S ++  L   +V   +GRVH   L   T TGRLS+  PNLQN P  
Sbjct: 582  VSEILDYRQIAKIQSTYVKGLL--DVIQPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTR 639

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AF+ + P   +   DY Q+ELR+LAH++  ++M +AFK G D HS TAM +
Sbjct: 640  TEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKI 699

Query: 910  YPHIRNAVETGQVLLEWHGEDKPP--VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
            + H+                D P    PL+       RR AK +NF I YG +  GL+++
Sbjct: 700  F-HL----------------DSPDQVTPLM-------RRHAKAVNFGIVYGISDYGLSKN 735

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              +S + A++ +D ++ +  ++  + +   +E+R   +  T++ R R  P I +   + R
Sbjct: 736  LGISRKRAQEFIDNYFEQYPQIKDYMDKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVR 795

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVA 1087
               ER AIN+P+QGSAAD+   AM+ + K      L  K+++QVHDE+I + P +  E  
Sbjct: 796  AFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETI 855

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            K IV E M         L V L  D+    NWY AK
Sbjct: 856  KKIVPEVMQSAV----KLDVPLIADSGWGHNWYDAK 887


>gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73]
 gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73]
          Length = 968

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/312 (38%), Positives = 165/312 (52%), Gaps = 30/312 (9%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S +  K GRVH + ++  T TGRLS+  PNLQN PA   +  KIR AFIA  G+ L+ AD
Sbjct: 682  SYILTKTGRVHTNYSLATTSTGRLSSSEPNLQNIPARTAEGRKIRAAFIASEGHILLSAD 741

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELRILAH A+  ++ +AF  G D H+ TA  M+           V +E    D   
Sbjct: 742  YSQIELRILAHFADIGALKEAFLQGQDIHAMTASQMF----------GVAVEGMPSDI-- 789

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       R++AK +NF I YG +  GLA    +S +EA   + L++     +  + 
Sbjct: 790  -----------RQRAKAINFGIIYGISSFGLANQLGISRKEAGNYIRLYFERFPGIEDYM 838

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K  +R   +V T+ GR   +P IK+     R   ERAAIN P+QGSAAD+   AM++
Sbjct: 839  EKTKMFARHHGYVETIFGRRIHYPEIKTANPQIRAFNERAAINAPIQGSAADIIRRAMIQ 898

Query: 1054 ISKNARLKELGWKLLLQVHDEVILE-GPSESAEVAKAI--VVECMSKPFNGKNNLRVDLS 1110
            +      ++L  K+LLQVHDE+I E   SES + A  I  V+E  + P     +L V L 
Sbjct: 899  VENALEKEKLSAKMLLQVHDELIFEVSKSESTKTAILIKKVMENATMP---ALSLSVPLE 955

Query: 1111 VDAKCAQNWYSA 1122
            V    AQNW  A
Sbjct: 956  VKVIAAQNWNEA 967



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 159/389 (40%), Gaps = 89/389 (22%)

Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGP-EADFGNGKSCIWVDLL 417
           W+L  + K    A DTE   +D  Q       +++ FS+   P +A +   +     D L
Sbjct: 371 WLLEAE-KQGYFAFDTETTSLDPMQ------AKLVGFSLALQPGKAAYIPLEHTAGEDGL 423

Query: 418 DGGGRDL--------LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMA 469
             GGR +        L    P  E+ +I K+  N  +D  V++ Y + +  F  DTM + 
Sbjct: 424 LAGGRIVPQIETQKALALLKPILENQAILKIGQNIKYDWLVMKQYDIVMRSFD-DTMLL- 481

Query: 470 RLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKL 529
                S   E G S   +     V+SE    ++               I+ KD+    K 
Sbjct: 482 -----SYALEAGISTHGI----DVLSERWLGHKP--------------ITYKDLTYNGK- 517

Query: 530 KKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPV 589
                  KI + A ++  Q         Y+A D+  TL+L++ LK +L+           
Sbjct: 518 -------KIVSFAQIDLKQAT------LYAAEDADITLRLWQVLKPQLV----------- 553

Query: 590 PGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKH 649
             + M   Y+   +P  EIL +ME  G+LVDR+ LS   +++    +AA+N   +    +
Sbjct: 554 -AQRMTKIYERLDRPLIEILARMEERGILVDRQILS---RLSGELAQAALNLEEEI---Y 606

Query: 650 CPDAKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTP 704
               +  N+ S  QL  +LFG     G   +K+   S   + +      E +  EG   P
Sbjct: 607 QLVGERFNIASPKQLGDILFGKMGLPGGAKTKNGQWSTSAQTL------EELATEGHILP 660

Query: 705 SK---FRNIT-LRSIGVD-LPTEMYTATG 728
            K   +R +  L+S   D LP+ + T TG
Sbjct: 661 RKIVDWRQLAKLKSTYTDALPSYILTKTG 689


>gi|403070339|ref|ZP_10911671.1| DNA polymerase I [Oceanobacillus sp. Ndiop]
          Length = 879

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 170/304 (55%), Gaps = 31/304 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN-SLIVADYGQLELR 880
            ++H   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    +  +  ADY Q+ELR
Sbjct: 604  KIHTRFNQALTQTGRLSSIDPNLQNIPIRLEEGRKIRQAFVPAKKDWIMFAADYSQIELR 663

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+AN + ++ AF+   D H++TAM+++ H+                        KD 
Sbjct: 664  VLAHIANDEKLVAAFQNDLDIHTQTAMDVF-HVE-----------------------KDE 699

Query: 941  FASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
              S  RR+AK +NF I YG +  GL+++  ++ + AK  ++ +++    V  + +   +E
Sbjct: 700  VTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAKNFIERYFDSYPGVRLYMDEIVQE 759

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            ++   +V TL+ R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++    +
Sbjct: 760  AKHKGYVTTLMNRRRYLPEINSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDLHWKLK 819

Query: 1060 LKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             ++L  ++LLQVHDE+ILE P E  +  K IV E M K      NL V L VD +   +W
Sbjct: 820  DEKLESRMLLQVHDELILEAPKEELDKLKEIVPEMMEKTV----NLNVPLKVDYEYGNSW 875

Query: 1120 YSAK 1123
            + AK
Sbjct: 876  FDAK 879


>gi|104774358|ref|YP_619338.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
            11842]
 gi|116514452|ref|YP_813358.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
            BAA-365]
 gi|418035776|ref|ZP_12674218.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
            bulgaricus CNCM I-1519]
 gi|103423439|emb|CAI98312.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
            11842]
 gi|116093767|gb|ABJ58920.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
            BAA-365]
 gi|354689342|gb|EHE89340.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
            bulgaricus CNCM I-1519]
          Length = 886

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 184/344 (53%), Gaps = 33/344 (9%)

Query: 784  EAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRP 842
            + +E    +S + E   I  + S ++  L    +  ++GR+H   L   T TGRLS+  P
Sbjct: 572  QLKEQSPVVSDILEYRQISKIQSTYVKGLLDV-IDERDGRIHTRYLQTLTATGRLSSVDP 630

Query: 843  NLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            NLQN P   ++  +IR+AF+ + P   +   DY Q+ELR+LAH++   +M +AFK G D 
Sbjct: 631  NLQNIPTRTEEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDI 690

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TAM ++ H+ +  E   +                     +RR+AK +NF I YG + 
Sbjct: 691  HAHTAMKIF-HLSSVDEVTSL---------------------QRRRAKAVNFGIVYGISD 728

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GL+++  +S ++AK+ ++ ++++   +  + +   K++R   +  T++ R R  P I +
Sbjct: 729  YGLSKNLDISRKQAKEFINEYFDQYPGIQAYMDWAVKDAREKGYAETIMHRRRYLPDIHA 788

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEG 1079
               + R+  ER AIN+P+QGSAAD+   AM+ + K  +L ELG   K+++QVHDE+I + 
Sbjct: 789  KNFNVRSFAERTAINSPIQGSAADIMKIAMINMQK--KLDELGLKTKMVVQVHDELIFDV 846

Query: 1080 PSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            P++  E  + IV   M         L V L  DA    +WY AK
Sbjct: 847  PADELETIQKIVPSVMQAAV----KLDVPLVADASWGHDWYEAK 886


>gi|251771629|gb|EES52205.1| DNA polymerase I [Leptospirillum ferrodiazotrophum]
          Length = 831

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 181/348 (52%), Gaps = 37/348 (10%)

Query: 780  ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLNINTE-T 834
            +T++EA E   A+  L ++      +   +S ++LP++     G +GR+H   N     T
Sbjct: 513  STDEEALEGLAALHPLPKLILSFRQLRKFLSTYLLPMEEGR--GSDGRLHGQFNQTVAAT 570

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+ RPNLQN PA  +    +R+ F+A  G  L+ ADY Q+ELR+LAH +    + +A
Sbjct: 571  GRLSSSRPNLQNIPARTELGLLVRRCFVAPQGGCLLSADYSQIELRLLAHFSGDPFLREA 630

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F  G D H+RTA  ++                 GE   PV       +  RR+AK +NF 
Sbjct: 631  FSRGEDIHARTAALLF-----------------GE---PV------TSESRRRAKTINFG 664

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            I YG +   L++D  V   EA+  +D +++    V  + E  ++E+R    + TLLGR R
Sbjct: 665  ILYGMSAYSLSQDLGVEPAEAQGIIDRYFSVVAGVGPYFEKIREEARRTGRIRTLLGRIR 724

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDE 1074
              P I+S  R+ R + ER A+N+ +QGSAAD+   AM+++S+      L  +LLLQVHDE
Sbjct: 725  PIPEIRSDNRNVREYGERMAVNSVLQGSAADLVKKAMVDLSQAVASSGLKARLLLQVHDE 784

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            ++ E   + AE   A+V + M     G   L V L V      +W  A
Sbjct: 785  LLFEVSEDQAESLSAVVRKTM----EGAIPLSVPLPVSIGRGADWVEA 828


>gi|422343362|ref|ZP_16424290.1| hypothetical protein HMPREF9432_00350 [Selenomonas noxia F0398]
 gi|355378669|gb|EHG25849.1| hypothetical protein HMPREF9432_00350 [Selenomonas noxia F0398]
          Length = 876

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 168/314 (53%), Gaps = 33/314 (10%)

Query: 814  GSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG---NSL 869
            G+ +  + GRV+ S N   T TGRLS+  PNLQN P   ++   +R  F   PG   ++L
Sbjct: 592  GALIHPETGRVYTSFNQTVTATGRLSSSDPNLQNIPVRTEEGRAVRALF--EPGEGYDAL 649

Query: 870  IVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGE 929
            + ADY Q+ELRILAH++   +++DAF+ G D H+RTA  ++    +AV TG+        
Sbjct: 650  LSADYSQIELRILAHMSGDATLIDAFRHGQDIHARTAAEVFGVPIDAV-TGE-------- 700

Query: 930  DKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEV 989
                          +RR+AK +NF I YG +  GL+RD ++  +EA   ++ ++     V
Sbjct: 701  --------------QRRRAKAVNFGIVYGLSDYGLSRDLRIPRKEAAGYIERYFERYHGV 746

Query: 990  LTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMC 1049
              + +    ++  + +V TL GR R  PAI S    QR+  ER A+NTP+QG+AAD+   
Sbjct: 747  REFLDKTVADAHANGYVTTLYGRRRELPAINSRNYMQRSFAERMAMNTPIQGTAADLIKI 806

Query: 1050 AMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDL 1109
            AM+          +  ++LLQVHDE++L    E+AE   A V   +    +G   L V L
Sbjct: 807  AMIRAHDALHAAGVKSRILLQVHDELVL----EAAEAEIAQVSSLLRTAMSGAAELAVPL 862

Query: 1110 SVDAKCAQNWYSAK 1123
            +VD    +NW  AK
Sbjct: 863  AVDVHIGKNWAEAK 876


>gi|336053750|ref|YP_004562037.1| DNA polymerase I [Lactobacillus kefiranofaciens ZW3]
 gi|333957127|gb|AEG39935.1| DNA polymerase I [Lactobacillus kefiranofaciens ZW3]
          Length = 887

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 174/334 (52%), Gaps = 30/334 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            +S + +   I  + S ++  L   +V   +GRVH   L   T TGRLS+  PNLQN P  
Sbjct: 582  VSEILDYRQIAKIQSTYVKGL--LDVIQPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTR 639

Query: 851  EKDRYKIRQAFIAV-PGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AF+   P   +   DY Q+ELR+LAH++    M +AFK G D HS TAM +
Sbjct: 640  TEEGKQIRKAFVPTDPDGYIFSCDYSQVELRVLAHVSGDAHMQEAFKTGYDIHSHTAMKI 699

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            + H+ +  E                PL+       RR AK +NF I YG +  GL+++  
Sbjct: 700  F-HLDSPDEV--------------TPLM-------RRHAKAVNFGIVYGISDYGLSKNLG 737

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            +S ++AK+ ++ ++ +  ++  + +   +E+R   +  T++ R R  P I +   + R  
Sbjct: 738  ISRKQAKEFINNYFEQYPQIKDYMDKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAF 797

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER AIN+P+QGSAAD+   AM+ + K      L  K+++QVHDE+I + P +  E  K 
Sbjct: 798  AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKK 857

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            IV E M         L V L  D+    NWY AK
Sbjct: 858  IVPEVMQSAV----KLDVPLIADSGWGHNWYDAK 887


>gi|422849674|ref|ZP_16896350.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK115]
 gi|325689238|gb|EGD31244.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK115]
          Length = 880

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 178/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  +  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +         ++LLQVHDE++LE P++     +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTENNFKSRMLLQVHDEIVLEVPNDELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  QLVKETMEAAI----ELAVPLVADENAGQTWYEAK 880


>gi|315038863|ref|YP_004032431.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
 gi|312276996|gb|ADQ59636.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
          Length = 887

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 176/336 (52%), Gaps = 34/336 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            +S + +   I  + S ++  L   +V   +GRVH   L   T TGRLS+  PNLQN P  
Sbjct: 582  VSEILDYRQIAKIQSTYVKGLL--DVIQPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTR 639

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AF+ + P   +   DY Q+ELR+LAH++  ++M +AFK G D HS TAM +
Sbjct: 640  TEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKI 699

Query: 910  YPHIRNAVETGQVLLEWHGEDKPP--VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
            + H+                D P    PL+       RR AK +NF I YG +  GL+++
Sbjct: 700  F-HL----------------DSPDQVTPLM-------RRHAKAVNFGIVYGISDYGLSKN 735

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              +S + A++ +D ++ +  ++  + +   +E+R   +  T++ R R  P I +   + R
Sbjct: 736  LGISRKRAQEFIDNYFEQYPQIKDYMDKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVR 795

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVA 1087
               ER AIN+P+QGSAAD+   AM+ + K      L  K+++QVHDE+I + P +  E  
Sbjct: 796  AFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETI 855

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            K IV E M         L V L  D+    NWY AK
Sbjct: 856  KKIVPEVMQSAV----KLDVPLIADSGWGHNWYDAK 887


>gi|405375773|ref|ZP_11029795.1| DNA polymerase I [Chondromyces apiculatus DSM 436]
 gi|397085938|gb|EJJ17096.1| DNA polymerase I [Myxococcus sp. (contaminant ex DSM 436)]
          Length = 909

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 174/330 (52%), Gaps = 30/330 (9%)

Query: 794  ALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEK 852
            A+ E  S+  L S ++  L    +   +GR+H + +   T TGRLS+  PNLQN P   +
Sbjct: 608  AIIEYRSLSKLKSTYLDTL--PTLVAADGRIHTTYHQAATATGRLSSTDPNLQNIPVRTE 665

Query: 853  DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
               +IR+AF+A  G+ L+ ADY Q+ELR+LAH+A+   +++AF+   D H+RTA  ++  
Sbjct: 666  LGREIRRAFVAAEGHQLVSADYSQVELRLLAHIADDAVLIEAFRHDEDIHTRTAAEVF-- 723

Query: 913  IRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSV 972
                V T +V  E                  +RR AKM+NF IAYG +P GL+    ++ 
Sbjct: 724  ---GVPTDKVDRE------------------QRRVAKMVNFGIAYGLSPHGLSARLGIAQ 762

Query: 973  EEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIER 1032
            + A+  ++ ++     +  + E     +R   +V TL GR R    + S  R      ER
Sbjct: 763  DVARDIIERYFIRYAGIKRYLEETVSVARKTGYVETLYGRRRYMADLNSKNRGVAQAAER 822

Query: 1033 AAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVV 1092
            AAIN P+QG+AAD+   AML +      ++L  ++LLQVHDE++ E P    E  KA+ V
Sbjct: 823  AAINMPIQGTAADLIKKAMLAVDAALTAQKLRTRMLLQVHDELLFEAPDAEVEQVKALAV 882

Query: 1093 ECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            + MS       +L+V L VD    ++W  A
Sbjct: 883  QAMS----SVADLKVPLKVDVGAGRSWADA 908


>gi|315653652|ref|ZP_07906572.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195]
 gi|315489014|gb|EFU78656.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195]
          Length = 890

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 170/305 (55%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
            +G++H   L   T TGRLS+  PNLQN P   ++  +IR+AF+    +S L   DY Q+E
Sbjct: 612  DGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVE 671

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+++ K+ML+AFK G D H+ TAM ++  + N  E                PL+ 
Sbjct: 672  LRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFG-LSNLDEV--------------TPLM- 715

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GLA++  +S +EA+  ++ ++ +  ++  + +A  K
Sbjct: 716  ------RRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVK 769

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R   +  T++ R R  P I +   + R+  ER AIN+P+QGSAAD+   AM+++    
Sbjct: 770  LAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSEL 829

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              ++L  K++LQ+HDE++ + PSE  ++ K +V + M +       L V L  DA    N
Sbjct: 830  ERRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQA----AQLDVPLIADANWGHN 885

Query: 1119 WYSAK 1123
            WY  K
Sbjct: 886  WYEVK 890


>gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|387869289|ref|YP_005700758.1| DNA polymerase I [Edwardsiella tarda FL6-60]
 gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60]
          Length = 930

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/356 (33%), Positives = 176/356 (49%), Gaps = 35/356 (9%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCS 827
            GA ++N ++ A   +   A   +  + E  ++  L S +   LP     V+   GRVH S
Sbjct: 606  GAPSTNEEVLAELADQGYALPQV--ILEYRTLAKLKSTYTDKLP---QMVNPLTGRVHTS 660

Query: 828  LN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLA 886
             +   T TGRLS+  PNLQN P    +  +IRQAFIA  G+ ++ ADY Q+ELRI+AHL+
Sbjct: 661  YHQAVTATGRLSSSDPNLQNIPVRSDEGRRIRQAFIAPAGSRIVAADYSQIELRIMAHLS 720

Query: 887  NCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERR 946
              K +L AF AG D H  TA  ++     AV                        A +RR
Sbjct: 721  GDKGLLAAFAAGKDIHRATAAEVFGLPLEAVS-----------------------ADQRR 757

Query: 947  KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006
             AK +NF + YG +  GLAR   +   EA++ +DL++     VL + E  ++ +    +V
Sbjct: 758  SAKAINFGLIYGMSAFGLARQLNIGRGEAQRYMDLYFERYPGVLAYMERTRQLASDQGYV 817

Query: 1007 HTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK 1066
             TL GR    P I +    +R   ERAAIN P+QG+AAD+   AM+ +    +  +   +
Sbjct: 818  ETLDGRRLYLPEINARNGMRRKAAERAAINAPMQGTAADIIKRAMIAVDGWLQEAQPEVR 877

Query: 1067 LLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            +++QVHDE++ E P    E     V   M        +L V L VD  C +NW  A
Sbjct: 878  MIMQVHDELVFEVPESQVEAVVCQVRALMENSL----SLAVPLKVDIGCGENWDQA 929


>gi|257865986|ref|ZP_05645639.1| DNA polymerase I [Enterococcus casseliflavus EC30]
 gi|257872319|ref|ZP_05651972.1| DNA polymerase I [Enterococcus casseliflavus EC10]
 gi|257799920|gb|EEV28972.1| DNA polymerase I [Enterococcus casseliflavus EC30]
 gi|257806483|gb|EEV35305.1| DNA polymerase I [Enterococcus casseliflavus EC10]
          Length = 881

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 181/346 (52%), Gaps = 36/346 (10%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLKEQAPIVEDILTYRQIAKIQSTYVEGLLKVIQGDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P   ++  KIR+AF+    + +I + DY Q+ELR+LAH+++   + +AF  
Sbjct: 622  SVDPNLQNIPIRLEEGRKIREAFVPREADWVIYSSDYSQIELRVLAHISDDTHLKEAFIE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHSSTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  ++ + A++ +D ++ +   V T+ E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVIL 1077
             I S   + R   ER AINTP+QGSAAD+   AM++++K  + ++L   +LLQVHDE++ 
Sbjct: 780  DINSRNFNIRTFAERTAINTPIQGSAADILKIAMIDLAKRLKEEKLAATMLLQVHDELVF 839

Query: 1078 EGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            E P        A+V E M +       L V L  D+   + WY AK
Sbjct: 840  EVPESELPRLDALVKEVMEQAV----ALHVPLLTDSNWGKTWYDAK 881


>gi|300361188|ref|ZP_07057365.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03]
 gi|300353807|gb|EFJ69678.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03]
          Length = 886

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/305 (35%), Positives = 163/305 (53%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLE 878
            +GR+H   L   T TGRLS+  PNLQN P    +  +IR+AF+    +  I + DY Q+E
Sbjct: 608  DGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTDEGKQIRKAFVPSTKDGYIFSCDYSQVE 667

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH++  + M +AFK+G D H+ TAM ++ H+ +  E                PL+ 
Sbjct: 668  LRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIF-HLDSPDEV--------------TPLM- 711

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GL+++  +S ++AK  +D ++ +  ++  + +   K
Sbjct: 712  ------RRHAKAVNFGIVYGISDYGLSKNLGISRKQAKTFIDNYFEQYPQIKDYMDKAIK 765

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            E+R   +  T++ R R  P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  
Sbjct: 766  EAREKGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKL 825

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
                L  K++LQVHDE+I + P    +  K IV E M         L V L  D+    N
Sbjct: 826  DELHLKTKMVLQVHDELIFDVPKAELDTIKKIVPEVMQSAV----TLDVPLIADSNWGHN 881

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 882  WYDAK 886


>gi|311031365|ref|ZP_07709455.1| DNA polymerase I [Bacillus sp. m3-13]
          Length = 877

 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 167/303 (55%), Gaps = 29/303 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            ++H   N   T+TGRLS+  PNLQN P   ++  KIR+AFI    + +I  ADY Q+ELR
Sbjct: 602  KIHTRFNQALTQTGRLSSIDPNLQNIPVRLEEGRKIREAFIPSHEDWVIFAADYSQIELR 661

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+AN + +++AFK   D H++TAM+++ H+               ED        + 
Sbjct: 662  VLAHIANDEKLIEAFKEDADIHTKTAMDVF-HV--------------SED--------EV 698

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             ++ RR+AK +NF I YG +  GL++   ++ ++AK  +D +      V  + E    ++
Sbjct: 699  TSNMRRQAKAVNFGIVYGISDYGLSQSLGITRKDAKTFIDRYLESFPGVKEYMEDSVLDA 758

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM++++     
Sbjct: 759  KDKGYVTTLLHRRRYLPEITSSNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMANRLEE 818

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
            + +  K+LLQVHDE++ E P +  E  K IV E M +       L+V L VD      WY
Sbjct: 819  ENMKSKVLLQVHDELVFEAPKDEIEKLKKIVPEVMEQAV----ELKVPLKVDYSYGSTWY 874

Query: 1121 SAK 1123
             AK
Sbjct: 875  DAK 877


>gi|309803215|ref|ZP_07697312.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d]
 gi|308164723|gb|EFO66973.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d]
          Length = 883

 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 170/305 (55%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
            +G++H   L   T TGRLS+  PNLQN P   ++  +IR+AF+    +S L   DY Q+E
Sbjct: 605  DGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVE 664

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+++ K+ML+AFK G D H+ TAM ++  + N  E                PL+ 
Sbjct: 665  LRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFG-LSNLDEV--------------TPLM- 708

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GLA++  +S +EA+  ++ ++ +  ++  + +A  K
Sbjct: 709  ------RRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVK 762

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R   +  T++ R R  P I +   + R+  ER AIN+P+QGSAAD+   AM+++    
Sbjct: 763  LAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSEL 822

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              ++L  K++LQ+HDE++ + PSE  ++ K +V + M +       L V L  DA    N
Sbjct: 823  ERRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQA----AQLDVPLIADANWGHN 878

Query: 1119 WYSAK 1123
            WY  K
Sbjct: 879  WYEVK 883


>gi|418028681|ref|ZP_12667235.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
            bulgaricus CNCM I-1632]
 gi|354691519|gb|EHE91440.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
            bulgaricus CNCM I-1632]
          Length = 896

 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 184/344 (53%), Gaps = 33/344 (9%)

Query: 784  EAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRP 842
            + +E    +S + E   I  + S ++  L    +  ++GR+H   L   T TGRLS+  P
Sbjct: 582  QLKEQSPVVSDILEYRQISKIQSTYVKGLLDV-IDERDGRIHTRYLQTLTATGRLSSVDP 640

Query: 843  NLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            NLQN P   ++  +IR+AF+ + P   +   DY Q+ELR+LAH++   +M +AFK G D 
Sbjct: 641  NLQNIPTRTEEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDI 700

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TAM ++ H+ +  E   +                     +RR+AK +NF I YG + 
Sbjct: 701  HAHTAMKIF-HLSSVDEVTSL---------------------QRRRAKAVNFGIVYGISD 738

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GL+++  +S ++AK+ ++ ++++   +  + +   K++R   +  T++ R R  P I +
Sbjct: 739  YGLSKNLDISRKQAKEFINEYFDQYPGIQAYMDWAVKDAREKGYAETIMHRRRYLPDIHA 798

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEG 1079
               + R+  ER AIN+P+QGSAAD+   AM+ + K  +L ELG   K+++QVHDE+I + 
Sbjct: 799  KNFNVRSFAERTAINSPIQGSAADIMKIAMINMQK--KLDELGLKTKMVVQVHDELIFDV 856

Query: 1080 PSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            P++  E  + IV   M         L V L  DA    +WY AK
Sbjct: 857  PADELETIQKIVPSVMQAAV----KLDVPLVADASWGHDWYEAK 896


>gi|417794008|ref|ZP_12441271.1| DNA-directed DNA polymerase [Streptococcus oralis SK255]
 gi|334271118|gb|EGL89512.1| DNA-directed DNA polymerase [Streptococcus oralis SK255]
          Length = 877

 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/349 (34%), Positives = 184/349 (52%), Gaps = 42/349 (12%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPVRLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P     +D   ++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----EDVTPNDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S ++AK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDE 1074
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K   L E G+  K+LLQVHDE
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDK--ALVEGGYQTKMLLQVHDE 832

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            ++LE P       KA+V + M +       L V L  D      WY AK
Sbjct: 833  IVLEVPKSELAAVKALVKQTMEEAI----QLSVPLIADENEGATWYEAK 877


>gi|329920128|ref|ZP_08276959.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G]
 gi|328936582|gb|EGG33026.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G]
          Length = 883

 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 170/305 (55%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
            +G++H   L   T TGRLS+  PNLQN P   ++  +IR+AF+    +S L   DY Q+E
Sbjct: 605  DGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVE 664

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+++ K+ML+AFK G D H+ TAM ++  + N  E                PL+ 
Sbjct: 665  LRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFG-LSNLDEV--------------TPLM- 708

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GLA++  +S +EA+  ++ ++ +  ++  + +A  K
Sbjct: 709  ------RRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVK 762

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R   +  T++ R R  P I +   + R+  ER AIN+P+QGSAAD+   AM+++    
Sbjct: 763  LAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSEL 822

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              ++L  K++LQ+HDE++ + PSE  ++ K +V + M +       L V L  DA    N
Sbjct: 823  ERRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQA----AQLDVPLIADANWGHN 878

Query: 1119 WYSAK 1123
            WY  K
Sbjct: 879  WYEVK 883


>gi|385818096|ref|YP_005854486.1| DNA polymerase I [Lactobacillus amylovorus GRL1118]
 gi|327184034|gb|AEA32481.1| DNA polymerase I [Lactobacillus amylovorus GRL1118]
          Length = 886

 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 176/336 (52%), Gaps = 34/336 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            +S + +   I  + S ++  L   +V   +GRVH   L   T TGRLS+  PNLQN P  
Sbjct: 581  VSEILDYRQIAKIQSTYVKGLL--DVIQPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTR 638

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AF+ + P   +   DY Q+ELR+LAH++  ++M +AFK G D HS TAM +
Sbjct: 639  TEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKI 698

Query: 910  YPHIRNAVETGQVLLEWHGEDKPP--VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
            + H+                D P    PL+       RR AK +NF I YG +  GL+++
Sbjct: 699  F-HL----------------DSPDQVTPLM-------RRHAKAVNFGIVYGISDYGLSKN 734

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              +S + A++ +D ++ +  ++  + +   +E+R   +  T++ R R  P I +   + R
Sbjct: 735  LGISRKRAQEFIDNYFEQYPQIKDYMDKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVR 794

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVA 1087
               ER AIN+P+QGSAAD+   AM+ + K      L  K+++QVHDE+I + P +  E  
Sbjct: 795  AFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETI 854

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            K IV E M         L V L  D+    NWY AK
Sbjct: 855  KKIVPEVMQSAV----KLDVPLIADSGWGHNWYDAK 886


>gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
 gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
          Length = 976

 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 158/301 (52%), Gaps = 26/301 (8%)

Query: 821  NGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GR+H S ++ +T TGRLS+  PNLQN P   ++   IR AF+A  G+SL+ ADY Q+EL
Sbjct: 696  QGRIHTSYSMASTTTGRLSSSEPNLQNIPVRTEEGRAIRTAFVAPAGHSLVSADYSQIEL 755

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RILAH+A+   + +AF+ G D H+ TA  M+                       VP+  +
Sbjct: 756  RILAHIADIPQLKEAFREGLDIHAMTASEMFG----------------------VPV--E 791

Query: 940  AFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               SE RR+AK +NF I YG +  GLA    +  +EA   +  ++     +  + ++ K 
Sbjct: 792  GMPSEIRRRAKAINFGIIYGISAFGLANQLSIPRDEAGTYIKRYFERFPGIRDYMDSTKA 851

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             ++   HV TL GR   +P I+S   S R   ERAAIN P+QG+AAD+   AM+ +    
Sbjct: 852  FAKEHGHVETLFGRRVHYPDIRSPNASVRAFNERAAINAPIQGTAADIIRRAMIRMEPAL 911

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
                L  ++LLQVHDE+I E   +  +    +V   M +       L V + VDAK A N
Sbjct: 912  ADAGLSARMLLQVHDELIFEVEDDQIDATLPVVRRVMEEAALPVVQLSVPIEVDAKAAAN 971

Query: 1119 W 1119
            W
Sbjct: 972  W 972



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 104/251 (41%), Gaps = 61/251 (24%)

Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
           P  ED ++ K+  N  +D  V+  +G+ ++ F  DTM ++   D+S  +  G+ ++ L+ 
Sbjct: 451 PVLEDDAVLKIGQNVKYDYLVMRRHGITMAPFD-DTMLISYALDASA-SLAGHGMDELS- 507

Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
                                 E F+G   +S K++ G  K  +  +A  I  +      
Sbjct: 508 ----------------------ERFLGHKPMSYKELCGSGKGARPIAACAIDKVT----- 540

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
                    +Y+A D+  TL+L++ LK +L+             + +   Y+   +P   
Sbjct: 541 ---------AYAAEDADVTLRLWQVLKPRLV------------AEGLATVYERLERPLVA 579

Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
           +L +ME  G+ VDR+ LS +      +Q        + A       +  N GS  QL ++
Sbjct: 580 VLARMEERGIKVDRQILSRLSGRFAQKQAGLEAEIAEIA------GETFNPGSPKQLGEV 633

Query: 668 LFG--GKPNSK 676
           LFG  G P  K
Sbjct: 634 LFGKLGLPGGK 644


>gi|403514605|ref|YP_006655425.1| DNA polymerase I [Lactobacillus helveticus R0052]
 gi|403080043|gb|AFR21621.1| DNA polymerase I [Lactobacillus helveticus R0052]
          Length = 887

 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/310 (34%), Positives = 165/310 (53%), Gaps = 28/310 (9%)

Query: 816  NVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVAD 873
            +V   +GRVH   L   T TGRLS+  PNLQN P   ++  +IR+AF+ + P   +   D
Sbjct: 604  DVIQPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSDPDGYIFSCD 663

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH++  ++M +AFK G D HS TAM ++ H+ +  E               
Sbjct: 664  YSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIF-HLESPDEV-------------- 708

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             PL+       RR AK +NF I YG +  GL+++  +S + A++ +D ++ +  ++  + 
Sbjct: 709  TPLM-------RRHAKAVNFGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIKDYM 761

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
                +E+R   +  T++ R R  P I +   + R   ER AIN+P+QGSAAD+   AM+ 
Sbjct: 762  NKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMIN 821

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            + K      L  K+++QVHDE+I + P +  E  K IV E M         L V L  D+
Sbjct: 822  MQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAV----KLDVPLIADS 877

Query: 1114 KCAQNWYSAK 1123
                NWY AK
Sbjct: 878  GWGHNWYDAK 887


>gi|385265800|ref|ZP_10043887.1| hypothetical protein MY7_2569 [Bacillus sp. 5B6]
 gi|385150296|gb|EIF14233.1| hypothetical protein MY7_2569 [Bacillus sp. 5B6]
          Length = 879

 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 180/337 (53%), Gaps = 32/337 (9%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNG-RVHCSLN-INTETGRLSARRPNLQNQ 847
            D ++ + +   I  L S +I  L    V+ K+  +VH   N   T+TGRLS+  PNLQN 
Sbjct: 572  DIVAYILQYRQIGKLQSTYIEGLL--KVTRKDSHKVHTRFNQALTQTGRLSSTDPNLQNI 629

Query: 848  PALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
            P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF    D H++TA
Sbjct: 630  PIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTA 689

Query: 907  MNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLAR 966
            M+++ H+    E  Q +                     RR+AK +NF I YG +  GL++
Sbjct: 690  MDVF-HVSED-EVTQAM---------------------RRQAKAVNFGIVYGISDYGLSQ 726

Query: 967  DWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQ 1026
            +  ++ +EA   +D +      V  + E   +E++   +V TL+ R R  P + S   + 
Sbjct: 727  NLGITRKEAGAFIDRYLESFPGVKAYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNL 786

Query: 1027 RNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEV 1086
            R+  ER A+NTP+QGSAAD+   AM++++   + K L  +LLLQVHDE+I E P E  E+
Sbjct: 787  RSFAERTAMNTPIQGSAADIIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIEI 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             + +V E M         L V L  D     +WY AK
Sbjct: 847  LEKLVPEVMEHAL----TLDVPLKADYASGPSWYDAK 879


>gi|397904016|ref|ZP_10504947.1| DNA polymerase I [Caloramator australicus RC3]
 gi|343178762|emb|CCC57846.1| DNA polymerase I [Caloramator australicus RC3]
          Length = 850

 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/310 (37%), Positives = 175/310 (56%), Gaps = 37/310 (11%)

Query: 820  KNGRVHCSLNIN-TETGRLSARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIV-ADYGQ 876
            ++G++H + N   T TGR+S+  PNLQN P  LE+ R +IR+AF+    + +I+ ADY Q
Sbjct: 572  EDGKIHSNFNQTVTATGRISSTEPNLQNIPIKLEQGR-QIRRAFVPTDDDYVILSADYSQ 630

Query: 877  LELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPL 936
            +ELR+LAHL+  ++++DAF  G D H+RTA  ++      V+  +V            PL
Sbjct: 631  IELRVLAHLSKDENLIDAFTKGQDIHTRTASEVF-----GVKMEEV-----------TPL 674

Query: 937  LKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEV---LTWQ 993
                   +R +AK +NF I YG +  GLA+D K+S +EAK+ ++ ++   + V   L W 
Sbjct: 675  -------QRSRAKAVNFGIVYGLSDFGLAKDLKISRKEAKEYIENYFERYKGVRNYLDWI 727

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
                KE     +V T++ R R  P I+S  ++ +   ER A+NTPVQGSAAD+   AM++
Sbjct: 728  VDFAKEK---GYVTTIMNRIRYIPEIRSTNKTVKMLGERLAMNTPVQGSAADIIKIAMIK 784

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            + K  + + L  +++LQVHDE+I+E   +  E  K IV   M         L V L VD 
Sbjct: 785  VFKRLKTEGLKSRIILQVHDELIIETYKDELENVKKIVKYEMENAV----KLVVPLVVDI 840

Query: 1114 KCAQNWYSAK 1123
                NWY+AK
Sbjct: 841  HVGDNWYNAK 850


>gi|385813378|ref|YP_005849771.1| DNA polymerase I [Lactobacillus helveticus H10]
 gi|323466097|gb|ADX69784.1| DNA polymerase I [Lactobacillus helveticus H10]
          Length = 887

 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/312 (35%), Positives = 165/312 (52%), Gaps = 32/312 (10%)

Query: 816  NVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVAD 873
            +V   +GRVH   L   T TGRLS+  PNLQN P   ++  +IR+AF+ + P   +   D
Sbjct: 604  DVIQPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSDPDGYIFSCD 663

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH++    M +AFK G D HS TAM ++ H+                D P 
Sbjct: 664  YSQVELRVLAHVSGDVHMQEAFKTGYDIHSHTAMKIF-HL----------------DSPD 706

Query: 934  --VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLT 991
               PL+       RR AK +NF I YG +  GL+++  +S ++AK+ +D ++ +  ++  
Sbjct: 707  KVTPLM-------RRHAKAVNFGIVYGISDYGLSKNLGISRKQAKEFIDNYFEQYPQIKD 759

Query: 992  WQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAM 1051
            + +   +E+R   +  T++ R R  P I +   + R   ER AIN+P+QGSAAD+   AM
Sbjct: 760  YMDKAVQEAREKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAM 819

Query: 1052 LEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSV 1111
            + + K      L  K+++QVHDE+I + P +  E  K IV E M         L V L  
Sbjct: 820  INMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAV----KLDVPLIA 875

Query: 1112 DAKCAQNWYSAK 1123
            D+    NWY AK
Sbjct: 876  DSGWGHNWYDAK 887


>gi|386816130|ref|ZP_10103348.1| DNA polymerase I [Thiothrix nivea DSM 5205]
 gi|386420706|gb|EIJ34541.1| DNA polymerase I [Thiothrix nivea DSM 5205]
          Length = 927

 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 157/308 (50%), Gaps = 28/308 (9%)

Query: 816  NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
             ++ + GRVH S +     TGRLS+  PNLQN P   ++  +IRQAFIA  G  L+ ADY
Sbjct: 646  QINPRTGRVHTSYHQAVASTGRLSSTDPNLQNIPVRNEEGRRIRQAFIAEKGCKLLAADY 705

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELRI+AHL+  K +LDAF  G D H  TA  ++    + V T Q             
Sbjct: 706  SQIELRIMAHLSGDKGLLDAFAHGLDVHRATAAEVFGTPLDEVSTEQ------------- 752

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                      RR AK +NF + YG +  GLA+   V   +A+  V+L++     V  + +
Sbjct: 753  ----------RRAAKAINFGLIYGMSAFGLAKQLGVDRRDAQDYVNLYFARYPGVKQYMD 802

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              ++++R    V TL GR    P IKS   + R + ER AIN P+QG+AAD+   AM+ +
Sbjct: 803  DTREQARAQGFVETLFGRRLFLPDIKSKNAATRQYAERTAINAPMQGTAADIIKKAMIAV 862

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
                R   L  ++++QVHDE++ E P    +  +A +   M+        L V L VD+ 
Sbjct: 863  DAWLRDSGLQTRMIMQVHDELVFEVPEAELDAVRAKITALMTN----AAKLDVPLVVDSG 918

Query: 1115 CAQNWYSA 1122
               NW  A
Sbjct: 919  IGDNWDEA 926


>gi|115424492|dbj|BAF33374.1| DNA polymerase I [Bacillus smithii]
          Length = 876

 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 172/303 (56%), Gaps = 29/303 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + +I  ADY Q+ELR
Sbjct: 601  KVHTRFNQALTQTGRLSSADPNLQNIPIRLEEGRKIRQAFVPSEKDWVIFSADYSQIELR 660

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH++  + +++AF+   D H++TAM+++ H++                       ++ 
Sbjct: 661  VLAHISGDQKLIEAFREDMDIHTKTAMDVF-HVQK----------------------EEV 697

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             ++ RR+AK +NF I YG +  GL+++  ++ +EA + ++ ++    +V  + +   +E+
Sbjct: 698  TSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGQFIERYFASYPDVKEYMDEIVREA 757

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++++  + 
Sbjct: 758  KRKGYVTTLLHRRRYLPEITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDMAERLKK 817

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
            ++L  ++LLQVHDE+I E P +  E  K IV + M         L+V L VD      WY
Sbjct: 818  EQLKSRMLLQVHDELIFEVPPDEIETMKKIVPDVMEHAV----ELKVPLKVDYAYGPTWY 873

Query: 1121 SAK 1123
             AK
Sbjct: 874  DAK 876


>gi|422847977|ref|ZP_16894660.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK72]
 gi|325686398|gb|EGD28428.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK72]
          Length = 880

 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 177/335 (52%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  +  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  +  ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQVHDE++LE P+      +
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNGELTAVR 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    Q WY AK
Sbjct: 850  QLVKETMEAAI----ELAVPLVADENAGQTWYEAK 880


>gi|389573843|ref|ZP_10163914.1| DNA polymerase I [Bacillus sp. M 2-6]
 gi|388426413|gb|EIL84227.1| DNA polymerase I [Bacillus sp. M 2-6]
          Length = 879

 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 168/303 (55%), Gaps = 29/303 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+ +  G  +  ADY Q+ELR
Sbjct: 604  KVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEGWLMFAADYSQIELR 663

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH++  +++++AF    D H++TAM+++ H+                        ++ 
Sbjct: 664  VLAHISQDENLIEAFTQDMDIHTKTAMDVF-HVSE----------------------EEV 700

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             +S RR+AK +NF I YG +  GL+++  ++ +EA   ++ +    + V T+ E   +E+
Sbjct: 701  TSSMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAAAFIERYLTSFKGVKTYMEDIVQEA 760

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + ++  ER A+NTP+QGSAAD+   AM+++++  + 
Sbjct: 761  KQKGYVTTLLKRRRYIPDITSRNFNVKSFAERTAMNTPIQGSAADIIKKAMIDMARKLKE 820

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
            + L   LLLQVHDE+I E P E   + + IV E M         L V L VD     +WY
Sbjct: 821  ENLQANLLLQVHDELIFEAPQEEIAILEKIVPEVMENAL----QLDVPLKVDYASGPSWY 876

Query: 1121 SAK 1123
             AK
Sbjct: 877  DAK 879


>gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
 gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
          Length = 901

 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 172/328 (52%), Gaps = 33/328 (10%)

Query: 795  LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
            L E  ++  L S +   LPLQ   V+ + GRVH S +   T TGRLS+  PNLQN P   
Sbjct: 600  LLEYRALSKLKSTYTDRLPLQ---VNPRTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRS 656

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
             +  +IRQAFIA PG  L+ ADY Q+ELRI+AHL++ + +L AF+AG D H RTA  ++ 
Sbjct: 657  AEGRRIRQAFIAPPGYCLLAADYSQIELRIMAHLSDDEGLLAAFEAGEDIHQRTAAEIF- 715

Query: 912  HIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971
                               + P   L+     +RR AK +NF + YG +  GLA+   +S
Sbjct: 716  -------------------RTP---LEGVTPEQRRSAKAINFGLIYGMSAHGLAQQLGIS 753

Query: 972  VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIE 1031
               A+  ++ +++    V  + +A  +++R   +V TL GR    P I S    +RN  E
Sbjct: 754  RSAAQHYIERYFHRYPGVKAYMDAICQQARQKGYVETLFGRRLYLPEIHSRQAQRRNQAE 813

Query: 1032 RAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIV 1091
            R AIN P+QG+AAD+   AML   +  + +    ++++QVHDE++ E      +   A +
Sbjct: 814  RMAINAPMQGTAADIIKRAMLRADQWLQKQGSNARMIMQVHDELVFEVAEAELDTTTAAI 873

Query: 1092 VECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             E M+    G   ++V L V+     NW
Sbjct: 874  RENMA----GAAQIKVPLIVEMGSGANW 897


>gi|160947654|ref|ZP_02094821.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270]
 gi|158446788|gb|EDP23783.1| DNA-directed DNA polymerase [Parvimonas micra ATCC 33270]
          Length = 888

 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 180/350 (51%), Gaps = 34/350 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL-NINTE 833
            ++T+ E  E      + +  + +  S++ LIS ++  +    +   +GRV  S   + T 
Sbjct: 568  YSTDVEVLEKLSKKHEIVDYILKYRSLNKLISTYLDGILEYIMD--DGRVRTSFKQMITA 625

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P   ++   IR+ F+A      I ADY Q+ELR+LAHL+    M+D
Sbjct: 626  TGRLSSVDPNLQNIPIRSEEGKNIRKVFVADKNKVFIDADYSQIELRVLAHLSKDSVMID 685

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            +FK   D H +TA  ++    N V   Q                       RR AK +NF
Sbjct: 686  SFKNDLDIHYKTASEVFGVPINEVTDNQ-----------------------RRSAKAVNF 722

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GL++D  ++  EA++ +D + N    + ++ E    +++ D  V T+L R 
Sbjct: 723  GIVYGISDYGLSKDLNITRNEARQYIDGYLNTYPSIKSYMEEIVNKAKKDGFVTTILDRK 782

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHD 1073
            R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++ +  +++++  KL+LQ+HD
Sbjct: 783  RYIPEINSKNFNIRSFGERIALNTPIQGSAADIIKLAMIKVYERLKIEKVNAKLILQIHD 842

Query: 1074 EVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            E+I+E      E  K I+   M   +     L + L VD    +NWY +K
Sbjct: 843  ELIVECEESEKETVKKILKNSMENVY----KLDLPLKVDICEGRNWYESK 888


>gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4]
 gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4]
          Length = 930

 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/332 (35%), Positives = 173/332 (52%), Gaps = 34/332 (10%)

Query: 795  LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
            + E  S+  L S +   LPL    V GK GRVH S +     TGRLS+  PNLQN P   
Sbjct: 628  ILEHRSLSKLKSTYTDKLPLM---VDGKTGRVHTSYHQAIAATGRLSSSEPNLQNIPIRT 684

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
            ++  +IR AF+A  G  ++ ADY Q+ELRI+AHL+  K +L AF  G D H  TA  ++ 
Sbjct: 685  EEGRRIRHAFVAPEGRKILAADYSQIELRIMAHLSQDKGLLSAFAEGKDIHRATAAEVFD 744

Query: 912  HIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971
                 V+  +V  E                  +RR+AK +NF + YG +  GLAR   + 
Sbjct: 745  -----VDFSEVTSE------------------QRRRAKAVNFGLIYGMSAFGLARQLDIP 781

Query: 972  VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIE 1031
              EA++ +D+++     VL + E  +  +    +V TL GR    PAIK     +R   E
Sbjct: 782  RHEAQQYIDIYFKRYPGVLKYMEDTRAAAAEQGYVSTLYGRRLYLPAIKDRNAMRRQAAE 841

Query: 1032 RAAINTPVQGSAADVAMCAMLEISKNARLKELG-WKLLLQVHDEVILEGPSESAEVAKAI 1090
            RAAIN P+QG+AAD+   AM+ I++    +  G   +++QVHDE++ E  ++ A+  K  
Sbjct: 842  RAAINAPMQGTAADIIKKAMINIAQWIETETQGEITMIMQVHDELVFEVDADKADSLKLK 901

Query: 1091 VVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            V E M++      +L V+L  +A    NW  A
Sbjct: 902  VCELMAQ----AASLDVELLAEAGIGDNWEQA 929


>gi|417009817|ref|ZP_11945932.1| DNA polymerase I, partial [Lactobacillus helveticus MTCC 5463]
 gi|328464768|gb|EGF36086.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463]
          Length = 650

 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 175/334 (52%), Gaps = 30/334 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            +S + +   I  + S ++  L   +V   +GRVH   L   T TGRLS+  PNLQN P  
Sbjct: 345  VSEILDYRQIAKIQSTYVKGL--LDVIQPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTR 402

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AF+ + P   +   DY Q+ELR+LAH++  ++M +AFK G D HS TAM +
Sbjct: 403  TEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKI 462

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            + H+ +  E                PL+       RR AK +NF I YG +  GL+++  
Sbjct: 463  F-HLESPDEV--------------TPLM-------RRHAKAVNFGIVYGISDYGLSKNLG 500

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            +S + A++ +D ++ +  ++  +     +E+R   +  T++ R R  P I +   + R  
Sbjct: 501  ISRKRAQEFIDNYFEQYPQIEDYMNKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAF 560

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER AIN+P+QGSAAD+   AM+ + K      L  K+++QVHDE+I + P +  E  K 
Sbjct: 561  AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKK 620

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            IV E M         L V L  D+    NWY AK
Sbjct: 621  IVPEVMQSAV----KLDVPLIADSGWGHNWYDAK 650


>gi|325912106|ref|ZP_08174504.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D]
 gi|325476056|gb|EGC79224.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D]
          Length = 883

 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 170/305 (55%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
            +G++H   L   T TGRLS+  PNLQN P   ++  +IR+AF+    +S L   DY Q+E
Sbjct: 605  DGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVE 664

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+++ K+ML+AFK G D H+ TAM ++  + N  E                PL+ 
Sbjct: 665  LRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFG-LSNLDEV--------------TPLM- 708

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GLA++  +S +EA+  ++ ++ +  ++  + +A  K
Sbjct: 709  ------RRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVK 762

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R   +  T++ R R  P I +   + R+  ER AIN+P+QGSAAD+   AM+++    
Sbjct: 763  LAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSEL 822

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              ++L  K++LQ+HDE++ + PSE  ++ K +V + M +       L V L  DA    N
Sbjct: 823  ERRKLKTKMILQIHDELLFDVPSEELDLIKILVPKIMQQA----AQLDVPLIADANWGHN 878

Query: 1119 WYSAK 1123
            WY  K
Sbjct: 879  WYEVK 883


>gi|357030774|ref|ZP_09092718.1| DNA polymerase I [Gluconobacter morbifer G707]
 gi|356415468|gb|EHH69111.1| DNA polymerase I [Gluconobacter morbifer G707]
          Length = 924

 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 162/303 (53%), Gaps = 32/303 (10%)

Query: 823  RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  +  T TGRLS+  PNLQN P   ++  +IR+AF+A PG  L+ ADY Q+ELR+
Sbjct: 650  RVHTSYQMAVTTTGRLSSNEPNLQNIPIRTEEGGRIRKAFVAAPGYVLLSADYSQIELRL 709

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A  + +L+AF+ G D H+RTA  ++             +   G D    PL     
Sbjct: 710  LAHVAKIEPLLEAFRLGQDIHARTASEVFG------------IPLEGMD----PL----- 748

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLAR  ++S  EA+  +D ++     +  + E  K+E++
Sbjct: 749  --TRRRAKAINFGIIYGISAFGLARQLQISAGEARSYIDAYFARYPGIRDYMERTKEEAK 806

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T  GR    P I+  +  +R + ER AIN P+QG AAD+   AM+ +++  RL 
Sbjct: 807  KHGYVMTPFGRRCYVPGIREKSGVRRAYAERQAINAPLQGGAADIIKRAMVHLAR--RLP 864

Query: 1062 ELGW--KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            E G   ++LLQVHDE++ E   + A    A V     +   G   L V L V+     NW
Sbjct: 865  ETGLNARMLLQVHDELLFEVTEQDAAGLAAFV----RREMEGAATLDVALEVETGVGSNW 920

Query: 1120 YSA 1122
              A
Sbjct: 921  ADA 923


>gi|335047502|ref|ZP_08540523.1| DNA-directed DNA polymerase [Parvimonas sp. oral taxon 110 str.
            F0139]
 gi|333761310|gb|EGL38865.1| DNA-directed DNA polymerase [Parvimonas sp. oral taxon 110 str.
            F0139]
          Length = 875

 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 105/304 (34%), Positives = 159/304 (52%), Gaps = 28/304 (9%)

Query: 821  NGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            +GRV  S   + T TGRLS+  PNLQN P   ++   IR+ F+A      I ADY Q+EL
Sbjct: 599  DGRVRTSFKQMITATGRLSSVDPNLQNIPIRSEEGKNIRKVFVADKNKVFIDADYSQIEL 658

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAHL+    M+D+FK   D H +TA  ++    N V   Q                  
Sbjct: 659  RVLAHLSKDSVMIDSFKNDLDIHYKTASEVFGVPINEVTDNQ------------------ 700

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RR AK +NF I YG +  GL++D  ++  EA++ +D + N    +  + E    +
Sbjct: 701  -----RRSAKAVNFGIVYGISDYGLSKDLNITRNEARQYIDGYLNTYPSIKKYMEEIVNK 755

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            ++ D +V T+L R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++ +   
Sbjct: 756  AKKDGYVTTILDRKRYIPEINSKNFNIRSFGERIALNTPIQGSAADIIKLAMIKVYERLN 815

Query: 1060 LKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             + +  KL+LQ+HDE+I+E      E+ K I+ + M   +     L + L VD    +NW
Sbjct: 816  SENVNAKLILQIHDELIIECEESEKEIVKKILKDSMENVY----KLDLPLKVDVCEGRNW 871

Query: 1120 YSAK 1123
            Y +K
Sbjct: 872  YESK 875


>gi|417928676|ref|ZP_12572064.1| DNA-directed DNA polymerase [Streptococcus dysgalactiae subsp.
            equisimilis SK1250]
 gi|340766550|gb|EGR89076.1| DNA-directed DNA polymerase [Streptococcus dysgalactiae subsp.
            equisimilis SK1250]
          Length = 905

 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 180/347 (51%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCSLNIN-TETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H     + T+TGRLS
Sbjct: 586  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYVLADGKIHTRYVQDLTQTGRLS 645

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 646  SVDPNLQNIPIRLEQGRL-IRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFN 704

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK       D  A++RR AK +NF I 
Sbjct: 705  EGADIHTSTAMRVF-----------------GIDKAA-----DVTANDRRNAKAVNFGIV 742

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 743  YGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL 802

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ +    +      K+LLQVHDE++
Sbjct: 803  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDNALQAGGFKAKMLLQVHDEIV 862

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P+      K +V E M        +L V L  D    Q+WY AK
Sbjct: 863  LEVPNTELAAVKKLVKETMEAAV----DLAVPLRADENAGQSWYEAK 905


>gi|289423054|ref|ZP_06424870.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L]
 gi|289156527|gb|EFD05176.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L]
          Length = 909

 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 121/364 (33%), Positives = 188/364 (51%), Gaps = 48/364 (13%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSL----ISNFILPLQGSNVSGKNGRV 824
            K   ++N ++    ++     D I+    V  + S     I+N I PL        +GR+
Sbjct: 585  KTGYSTNAEVLEKLRDKHPIIDMITDYRTVVKLKSTYVEGINNLINPL--------DGRI 636

Query: 825  HCSLN--INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRIL 882
            H S N  I T TGR+S+  PN+QN P       ++R+ F+A  G+ L+ ADY Q+ELR+L
Sbjct: 637  HSSFNQAIAT-TGRISSTDPNMQNIPVRTDLGRQLRRVFVAGQGSKLVDADYSQVELRVL 695

Query: 883  AHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFA 942
            A ++  + M++AF  G D H  TA  ++                       VP   D  +
Sbjct: 696  ADMSGDEDMIEAFDRGVDIHRNTASQVFG----------------------VPF--DEVS 731

Query: 943  SE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
            +E R  AK +NF I YGK+  GLA+D  +S+ +AK+ ++ ++    ++  + +    ++ 
Sbjct: 732  AELRSAAKAVNFGIIYGKSDFGLAKDLDISIAKAKEYIENYFARFPKIKGFMDHIVSDAE 791

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +  T+ GR R  P IKS    ++N   RAA+N P+QGSAAD+   AM+ +  + RL+
Sbjct: 792  EKGYSTTIFGRRRYIPEIKSSNFVEKNRGIRAAMNAPIQGSAADIIKIAMVNV--HNRLE 849

Query: 1062 ELGWK--LLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            E G K  L+LQVHDE+I+E P E  E  + ++ E M    N K NL VDL+V      +W
Sbjct: 850  EEGLKSNLILQVHDELIVESPIEEVERVRVLLKEEMENAVNLKVNLDVDLNV----GDSW 905

Query: 1120 YSAK 1123
            Y  K
Sbjct: 906  YETK 909


>gi|352107004|ref|ZP_08961725.1| DNA polymerase I [Halomonas sp. HAL1]
 gi|350597455|gb|EHA13594.1| DNA polymerase I [Halomonas sp. HAL1]
          Length = 929

 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 163/303 (53%), Gaps = 28/303 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GRVH S +   T TGRLS+  PNLQN P   ++  KIRQAFIA PG  ++ ADY Q+EL
Sbjct: 653  TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAFIARPGYRIVAADYSQIEL 712

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K +L+AF  G D H+ TA  ++         G  L +  G+          
Sbjct: 713  RIMAHLSEDKGLLEAFAEGRDIHTATAAEVF---------GTSLEKVSGD---------- 753

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                +RR AK +NF + YG +  GLAR  ++   +A+  +D +++    V  + E  + +
Sbjct: 754  ----QRRSAKAINFGLIYGMSAWGLARQLRIERNQAQTYIDRYFDRYPGVARYMERIRSQ 809

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +  D  V T+LGR    P I+S  R++R   ER AIN P+QG+AAD+   AM+++     
Sbjct: 810  AAEDGFVETVLGRRLYLPEIQSQNRNRRQGAERTAINAPMQGTAADIIKQAMIDVDAWLE 869

Query: 1060 LKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
              E    +++QVHDE++ E   +  E   A + +  ++   G   L+V L V+A+   NW
Sbjct: 870  EGEFDALMVMQVHDELVFEVAEKQVE---AFIKQVQTR-MQGAAALKVPLIVEAESGANW 925

Query: 1120 YSA 1122
              A
Sbjct: 926  DEA 928


>gi|408402494|ref|YP_006860458.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
            RE378]
 gi|283131335|dbj|BAI63340.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis]
 gi|407968723|dbj|BAM61961.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
            RE378]
          Length = 924

 Score =  180 bits (456), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 182/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 605  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQDLTQTGRLS 664

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 665  SVDPNLQNIPIRLEQGRL-IRKAFTPSQEDAVLLSSDYSQIELRVLAHISGDEHLIAAFN 723

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK      +D  A++RR AK +NF I 
Sbjct: 724  EGADIHTSTAMRVF-----------------GIDKA-----EDVTANDRRNAKAVNFGIV 761

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 762  YGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL 821

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ +    +      K+LLQVHDE++
Sbjct: 822  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDNALQAGGFKAKMLLQVHDEIV 881

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P++     K +V + M        +L V L  D    Q+WY AK
Sbjct: 882  LEVPNDELTAIKKLVKDTMEAAV----DLAVPLRADENAGQSWYEAK 924


>gi|365158108|ref|ZP_09354349.1| DNA polymerase I [Bacillus smithii 7_3_47FAA]
 gi|363621937|gb|EHL73119.1| DNA polymerase I [Bacillus smithii 7_3_47FAA]
          Length = 876

 Score =  180 bits (456), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 172/303 (56%), Gaps = 29/303 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + +I  ADY Q+ELR
Sbjct: 601  KVHTRFNQALTQTGRLSSADPNLQNIPIRLEEGRKIRQAFVPSEKDWVIFSADYSQIELR 660

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH++  + +++AF+   D H++TAM+++ H++                       ++ 
Sbjct: 661  VLAHISGDQKLIEAFREDMDIHTKTAMDVF-HVQK----------------------EEV 697

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             ++ RR+AK +NF I YG +  GL+++  ++ +EA + ++ ++    +V  + +   +E+
Sbjct: 698  TSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGQFIERYFASYPDVKEYMDEIVREA 757

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++++  + 
Sbjct: 758  KRKGYVTTLLHRRRYLPEITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDMAERLKK 817

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
            ++L  ++LLQVHDE+I E P +  E  K IV + M         L+V L VD      WY
Sbjct: 818  EQLKSRMLLQVHDELIFEVPPDEIETMKKIVPDVMEHAV----ELKVPLKVDYAYGPTWY 873

Query: 1121 SAK 1123
             AK
Sbjct: 874  DAK 876


>gi|407978365|ref|ZP_11159197.1| DNA polymerase I [Bacillus sp. HYC-10]
 gi|407415133|gb|EKF36746.1| DNA polymerase I [Bacillus sp. HYC-10]
          Length = 879

 Score =  180 bits (456), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 168/303 (55%), Gaps = 29/303 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAFI +  G  +  ADY Q+ELR
Sbjct: 604  KVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSKEGWLMFAADYSQIELR 663

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH++  +++++AF    D H++TAM+++ H+                        ++ 
Sbjct: 664  VLAHISQDENLIEAFTQDMDIHTKTAMDVF-HVSE----------------------EEV 700

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             +S RR+AK +NF I YG +  GL+++  ++ +EA   ++ +    + V T+ E   +E+
Sbjct: 701  TSSMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAAAFIERYLTSFKGVKTYMEEIVQEA 760

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + ++  ER A+NTP+QGSAAD+   AM+++ +  + 
Sbjct: 761  KQKGYVTTLLKRRRYIPDITSRNFNIKSFAERTAMNTPIQGSAADIIKKAMIDMVRKLKE 820

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
            + L   LLLQVHDE+I E P E   + + IV E M        +L V L VD     +WY
Sbjct: 821  ENLQANLLLQVHDELIFEAPKEEIAILEKIVPEVMENTL----HLDVPLKVDFASGPSWY 876

Query: 1121 SAK 1123
             AK
Sbjct: 877  DAK 879


>gi|282880586|ref|ZP_06289293.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
 gi|281305689|gb|EFA97742.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
          Length = 920

 Score =  180 bits (456), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/308 (37%), Positives = 159/308 (51%), Gaps = 30/308 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + G +H S N   T TGRLS+  PNLQN P   +D  +IR+ FI   G     ADY 
Sbjct: 640  INPQTGHIHTSFNQTVTATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEDGCLFFSADYS 699

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR++AHL+  K M++AF+ G D H+ TA  MY                 G++     
Sbjct: 700  QIELRVMAHLSGDKHMIEAFQEGYDIHAATAAKMY-----------------GKE----- 737

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +KD    ER KAK  NF I YG T  GLA    +   EAK+ +D ++    +V ++ E 
Sbjct: 738  -MKDVTRDERTKAKRANFGIIYGITVFGLAERLGIDRGEAKQLIDGYFTTFPQVQSYMEQ 796

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             K  +R   +V T   R R  P I S   + R   ER AIN P+QGSAAD+   AM+ I 
Sbjct: 797  AKDMAREKGYVETFFHRRRYLPDINSQNATVRGFAERNAINAPIQGSAADIIKVAMIRIY 856

Query: 1056 KNARLKELGWKLLLQVHDEVILEG-PSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
            +  + + +  K++LQVHDE+     PSE  +V + IV+E M   +     L+V L  DA 
Sbjct: 857  ERFKRENIQSKMILQVHDELNFSVLPSEKEQVER-IVLEEMQNAY----QLKVPLVADAG 911

Query: 1115 CAQNWYSA 1122
               NW  A
Sbjct: 912  WGHNWLEA 919


>gi|448748354|ref|ZP_21729991.1| DNA polymerase 1 [Halomonas titanicae BH1]
 gi|445564056|gb|ELY20186.1| DNA polymerase 1 [Halomonas titanicae BH1]
          Length = 931

 Score =  180 bits (456), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 161/303 (53%), Gaps = 28/303 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GRVH S +   T TGRLS+  PNLQN P   ++  KIRQAFIA PG  ++ ADY Q+EL
Sbjct: 655  TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAFIARPGYRIVAADYSQIEL 714

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K +L+AF  G D H+ TA  ++         G  L +  G+          
Sbjct: 715  RIMAHLSEDKGLLEAFAEGRDIHTATAAEVF---------GTSLDKVSGD---------- 755

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                +RR AK +NF + YG +  GL+R   +   +A+  +D +++    V  + E  + +
Sbjct: 756  ----QRRSAKAINFGLIYGMSAWGLSRQLHIERNQAQTYIDRYFDRYPGVARYMERIRSQ 811

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +  D  V T+LGR    P I+S  R++R   ER AIN P+QG+AAD+   AM+++     
Sbjct: 812  AGEDGFVETVLGRRLYLPEIQSQNRNRRQGAERTAINAPMQGTAADIIKQAMIDVDAWLA 871

Query: 1060 LKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
              E    +++QVHDE++ E   +  E      +E + K   G   L+V L V+A+   NW
Sbjct: 872  EGEFDALMVMQVHDELVFEVAEKQVEA----FIEQVQKRMQGAAALKVPLIVEAESGANW 927

Query: 1120 YSA 1122
              A
Sbjct: 928  DEA 930


>gi|410594057|ref|YP_006950784.1| DNA polymerase [Streptococcus agalactiae SA20-06]
 gi|410517696|gb|AFV71840.1| DNA polymerase [Streptococcus agalactiae SA20-06]
          Length = 880

 Score =  180 bits (456), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 182/337 (54%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ   +  ++G++H     + T+TGRLS+  PNLQN P  
Sbjct: 575  VTKILEYRQITKLQSTYIIGLQDYIL--EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    N+++++ DY Q+ELR+LAH++  K ++ AFK G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDKHLIAAFKEGADIHTSTAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     ++   ++RR AK +NF I YG +  GL+ + 
Sbjct: 692  VF-----------------GIEKP-----ENVTPNDRRNAKAVNFGIVYGISDFGLSHNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +  + AK+ +D ++     +  + E   +E++   +V TL  R R  P I S   + R 
Sbjct: 730  GIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQ 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + +   L + G+  K+LLQVHDE++LE  +E    
Sbjct: 790  FAERTAINSPIQGSAADILKIAMINLDR--VLDKGGYKSKMLLQVHDEIVLEVLNEEIGA 847

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             K +V + M        +L V L  D    + WY AK
Sbjct: 848  IKELVTKTMESAI----SLSVPLIADENAGETWYEAK 880


>gi|417838013|ref|ZP_12484251.1| DNA polymerase I [Lactobacillus johnsonii pf01]
 gi|338761556|gb|EGP12825.1| DNA polymerase I [Lactobacillus johnsonii pf01]
          Length = 886

 Score =  180 bits (456), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 167/305 (54%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLE 878
            +GR+H   L   T TGRLS+  PNLQN P   ++  +IR+AF+    +  I + DY Q+E
Sbjct: 608  DGRIHTRYLQTLTTTGRLSSVDPNLQNIPTKTEEGKQIRKAFVPSTKDGYIFSCDYSQVE 667

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH++  + M +AFK+G D H+ TAM ++ H+ +  E                PL+ 
Sbjct: 668  LRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIF-HLDSPDEV--------------TPLM- 711

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GL+++  +S ++AK  ++ ++ +  ++ ++ +   K
Sbjct: 712  ------RRHAKAVNFGIVYGISDYGLSKNLGISRKQAKTFIENYFEQYPQIKSYMDEAIK 765

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R + +  T++ R R  P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  
Sbjct: 766  KARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKL 825

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
                L  K++LQVHDE+I + P +  +  K IV E M         L V L  D+    N
Sbjct: 826  DELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAV----KLDVPLIADSNWGHN 881

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 882  WYDAK 886


>gi|374996095|ref|YP_004971594.1| DNA polymerase I [Desulfosporosinus orientis DSM 765]
 gi|357214461|gb|AET69079.1| DNA polymerase I [Desulfosporosinus orientis DSM 765]
          Length = 874

 Score =  180 bits (456), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 176/346 (50%), Gaps = 36/346 (10%)

Query: 781  TEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSA 839
            T ++ R     ++ + +   ++ LIS ++    G     K GR+H +     T TGRLS+
Sbjct: 556  TLEDLRSVHPIVAKILDYRQLNKLISTYV---NGLLAQAKEGRIHTTFQQTVTATGRLSS 612

Query: 840  RRPNLQNQPA-LEKDRYKIRQAFIAV-PGNSLIVADYGQLELRILAHLANCKSMLDAFKA 897
              PNLQN P  LE+ R ++R+ F    PG  L+ ADY Q+ELRILAH +    + ++F  
Sbjct: 613  TEPNLQNIPIRLEQGR-QLRKVFHPTEPGWVLLSADYSQIELRILAHYSQDPLLCESFAL 671

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+RTA  ++                          L +     RR AK +NF + Y
Sbjct: 672  GQDVHTRTAAEVFGIS-----------------------LDEVTPDMRRSAKAVNFGLVY 708

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G T  GL+RD  +  +EAK  V+ ++     V  + E    +++ D  V TLL R RR P
Sbjct: 709  GLTEFGLSRDLGIPRKEAKFYVEQYFKRYSGVKRYLEGVVTQAKQDGQVRTLLNRLRRIP 768

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVIL 1077
             +    R QR   ER A+NTPVQG+AAD+   AML++++   +K     +LLQVHDE++L
Sbjct: 769  ELMHSNRVQRQFGERIAMNTPVQGTAADIMKLAMLKVAEG--IKPYKADMLLQVHDELLL 826

Query: 1078 EGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +   E  E    ++ E M K +    +L V ++V+ K   NWY  K
Sbjct: 827  QVAPEDLESVACVLKENMEKAY----SLSVPMTVECKVGPNWYDMK 868


>gi|251783393|ref|YP_002997698.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
            GGS_124]
 gi|242392025|dbj|BAH82484.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
            GGS_124]
          Length = 880

 Score =  180 bits (456), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 181/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 621  SVDPNLQNIPIRLEQGRL-IRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFN 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G DK       D  A++RR AK +NF I 
Sbjct: 680  EGADIHTSTAMRVF-----------------GIDKAA-----DVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ +    +      K+LLQVHDE++
Sbjct: 778  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDNALQAGGFKAKMLLQVHDEIV 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P++     K +V + M        +L V L  D    Q+WY AK
Sbjct: 838  LEVPNDELTAIKKLVKDTMEAAV----DLAVPLRADENAGQSWYEAK 880


>gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
 gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
          Length = 899

 Score =  180 bits (456), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 160/307 (52%), Gaps = 28/307 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  ++GR+H + +     TGRLS+  PNLQN P   +   +IR AF+A PG  L+ ADY 
Sbjct: 619  VDPRDGRIHTTFHQAGAATGRLSSSDPNLQNIPVRTELSRRIRAAFVAPPGWRLLSADYS 678

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRILAH ++  ++L+AF+   D H+RTA   +      V TG+V  +          
Sbjct: 679  QIELRILAHYSDDPALLEAFRLREDVHTRTAAETF-----GVATGEVTSDM--------- 724

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR AK+LNF IAYG +  GL++   +   EA+  +D ++     V  + E 
Sbjct: 725  ---------RRIAKVLNFGIAYGLSAFGLSQRLDLPGAEAQGIIDRYFARYAGVRRYVEK 775

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +++R      TL GRAR  P I +   + RN  ER AINTP+QG+AAD+   AM+ + 
Sbjct: 776  AVEDARATGESRTLFGRARAMPEIAARNPALRNAAERTAINTPIQGTAADIVKVAMIRVH 835

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
                      +LLLQVHDE++LE P +     +A+V   M     G   L+V L V+   
Sbjct: 836  DALAGDARRARLLLQVHDELVLEVPEDELAPVEALVRREM----GGAAQLKVPLDVEVGV 891

Query: 1116 AQNWYSA 1122
              +W  A
Sbjct: 892  GHSWAEA 898


>gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
 gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
          Length = 920

 Score =  180 bits (456), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/307 (35%), Positives = 158/307 (51%), Gaps = 28/307 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            +  +   +H S N   T TGRLS+  PNLQN P   +D  +IR+ F+  PG     ADY 
Sbjct: 640  IHKRTQHIHTSFNQALTATGRLSSSDPNLQNIPVRSEDGKEIRKCFVPEPGCLFFSADYS 699

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  ++M++AF+ G D H+ TA  +                WH +      
Sbjct: 700  QIELRIMAHLSGDENMIEAFREGFDIHAATAAKI----------------WHKQ------ 737

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             + D    ER+KAK  NF I YG T  GLA+   +  +EA+  ++ ++    +V  + E 
Sbjct: 738  -IADVTPEERKKAKQANFGIIYGITTYGLAQRMGIDNKEARMLIEDYFTTFPKVKAYMEQ 796

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             K+E+R   +  TL GR R  P I S   + R   ER AIN P+QGS AD+   AM+ I 
Sbjct: 797  AKEEARQKGYAVTLFGRRRYLPDINSKNGTVRGFAERNAINAPIQGSEADIIKIAMIRIW 856

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
            +  + + +  K++LQVHDE+      E  E  + IV+E M     G   L+V L+ DA  
Sbjct: 857  QRFKAENIRSKMILQVHDELNFSVYPEEKERVEKIVLEEMQ----GACQLKVPLTADAGW 912

Query: 1116 AQNWYSA 1122
              NW  A
Sbjct: 913  GNNWLEA 919



 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 146/393 (37%), Gaps = 84/393 (21%)

Query: 283 ECFEDGSSYTPPPKLVSFKRSNQK--NPKNDA-AEGTGQNKKASENENSEKLEILRSKLA 339
           E F D    T   K+++     QK  N + D  A+    ++ +SEN + E L+ ++ +  
Sbjct: 270 EIFADLEFKTLANKILNKTEQKQKSVNVERDLFADIPSNSQVSSENASFESLKTIKHEYK 329

Query: 340 SFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
                  ++DN   A+++      K    + + DTE    D  +   V     +CF++  
Sbjct: 330 -------LIDNQEEAQRICDFFKTKQ---ILSLDTETTSTDAIEAELVG----LCFAV-- 373

Query: 400 GPEADFGNGKSCIWVDLLDGGGRDL--LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLK 457
                        +V + +   + L  +N F   +EDPSI K+  N  +D  VL+NYG+ 
Sbjct: 374 -------EEHKAFYVAIPNDRKQALQYVNIFKSVYEDPSILKIGQNIKYDYEVLKNYGVT 426

Query: 458 VSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK 517
           + G   DTM    +     R    Y  E L   + +  E+         K          
Sbjct: 427 LQGKMFDTMLAHYVLQPELRHNMDYMAETLLNYKTIHIEELIGAPGKHQK---------- 476

Query: 518 ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKL 577
            SM+D                  IAP         E    Y A D+  TL+L   L+ KL
Sbjct: 477 -SMRD------------------IAP---------EDAYEYGAEDADITLQLRNVLEPKL 508

Query: 578 LEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEA 637
            E+            +M   + +   P   +L  ME  G+ VD   L +  ++       
Sbjct: 509 KEV------------AMEALFWDIETPLIPVLADMELNGVRVDTATLHDTAEIFTER--- 553

Query: 638 AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
            +NR  +   +   +    N+ S  Q+  +LFG
Sbjct: 554 -MNRLERHIYEEAGET--FNIASPKQVGDILFG 583


>gi|227877046|ref|ZP_03995135.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256850116|ref|ZP_05555546.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|262047415|ref|ZP_06020372.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|227863364|gb|EEJ70794.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256713088|gb|EEU28079.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|260572389|gb|EEX28952.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
          Length = 887

 Score =  180 bits (456), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 176/334 (52%), Gaps = 30/334 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            +S + +   I  + S ++  L   +V   +GRVH   L   T TGRLS+  PNLQN P  
Sbjct: 582  VSEILDYRQIAKIQSTYVKGLL--DVIQSDGRVHTRYLQTLTATGRLSSVDPNLQNIPTR 639

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AF+ + P   +   DY Q+ELR+LAH++  ++M +AFK G D HS TAM +
Sbjct: 640  TEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKI 699

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            + H+ +  E                PL+       RR AK +NF I YG +  GL+++  
Sbjct: 700  F-HLDSPDEV--------------TPLM-------RRHAKAVNFGIVYGISDYGLSKNLG 737

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            +S + A++ +D ++ +  ++  + +   + +R   +  T++ R R  P I +   + R+ 
Sbjct: 738  ISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSF 797

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER AIN+P+QGSAAD+   AM+ + K      L  K+++QVHDE+I + P +  E  K 
Sbjct: 798  AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKIVVQVHDELIFDVPKDELETIKK 857

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            IV E M         L V L  D+    NWY AK
Sbjct: 858  IVPEVMQSAV----KLDVPLIADSGWGHNWYDAK 887


>gi|365896869|ref|ZP_09434920.1| DNA polymerase I (POL I) [Bradyrhizobium sp. STM 3843]
 gi|365422366|emb|CCE07462.1| DNA polymerase I (POL I) [Bradyrhizobium sp. STM 3843]
          Length = 1025

 Score =  180 bits (456), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/308 (37%), Positives = 160/308 (51%), Gaps = 26/308 (8%)

Query: 817  VSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+ +  RVH +  +   T GRLS+  PNLQN P   +D  KIR+AFIA PG+ L+ ADY 
Sbjct: 741  VNAQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIATPGHKLVSADYS 800

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LA +A+   +  AFK G D H+ TA  M+                       VP
Sbjct: 801  QIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFG----------------------VP 838

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            + KD  +  RR+AK +NF I YG +  GLA    +  EEA   +  ++     +  + +A
Sbjct: 839  I-KDMPSEVRRRAKAINFGIIYGISAFGLANQLGIPREEASAYIKRYFERFPGIRDYMDA 897

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             K+  R   +V TL GR   +P IK+   S R+  ERAAIN  +QG+AAD+   AM  + 
Sbjct: 898  TKEFCRKHGYVTTLFGRKCHYPEIKASNASVRSFNERAAINARLQGTAADIIRRAMTRVE 957

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMS-KPFNGKNNLRVDLSVDAK 1114
                  +L  ++LLQVHDE+I E P E  E    +V   M   PF     L V L VDA+
Sbjct: 958  DALARHKLSAQMLLQVHDELIFEVPDEEVEATLPVVRHVMQDAPFPAV-LLSVPLHVDAR 1016

Query: 1115 CAQNWYSA 1122
             A NW  A
Sbjct: 1017 AATNWDEA 1024


>gi|256843650|ref|ZP_05549138.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|293381755|ref|ZP_06627732.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1]
 gi|256615070|gb|EEU20271.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|290921675|gb|EFD98700.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1]
          Length = 887

 Score =  180 bits (456), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 176/334 (52%), Gaps = 30/334 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            +S + +   I  + S ++  L   +V   +GRVH   L   T TGRLS+  PNLQN P  
Sbjct: 582  VSEILDYRQIAKIQSTYVKGLL--DVIQSDGRVHTRYLQTLTATGRLSSVDPNLQNIPTR 639

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AF+ + P   +   DY Q+ELR+LAH++  ++M +AFK G D HS TAM +
Sbjct: 640  TEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKI 699

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            + H+ +  E                PL+       RR AK +NF I YG +  GL+++  
Sbjct: 700  F-HLDSPDEV--------------TPLM-------RRHAKAVNFGIVYGISDYGLSKNLG 737

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            +S + A++ +D ++ +  ++  + +   + +R   +  T++ R R  P I +   + R+ 
Sbjct: 738  ISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSF 797

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER AIN+P+QGSAAD+   AM+ + K      L  K+++QVHDE+I + P +  E  K 
Sbjct: 798  AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKIVVQVHDELIFDVPKDELETIKK 857

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            IV E M         L V L  D+    NWY AK
Sbjct: 858  IVPEVMQSAV----KLDVPLIADSGWGHNWYDAK 887


>gi|421532935|ref|ZP_15979275.1| DNA polymerase I [Streptococcus agalactiae STIR-CD-17]
 gi|403641762|gb|EJZ02688.1| DNA polymerase I [Streptococcus agalactiae STIR-CD-17]
          Length = 880

 Score =  180 bits (456), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 182/337 (54%), Gaps = 36/337 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ   +  ++G++H     + T+TGRLS+  PNLQN P  
Sbjct: 575  VTKILEYRQITKLQSTYIIGLQDYIL--EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    N+++++ DY Q+ELR+LAH++  K ++ AFK G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDKHLIAAFKEGADIHTSTAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     ++   ++RR AK +NF I YG +  GL+ + 
Sbjct: 692  VF-----------------GIEKP-----ENVTPNDRRNAKAVNFGIVYGISDFGLSHNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +  + AK+ +D ++     +  + E   +E++   +V TL  R R  P I S   + R 
Sbjct: 730  GIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQ 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEV 1086
              ER AIN+P+QGSAAD+   AM+ + +   L + G+  K+LLQVHDE++LE  +E    
Sbjct: 790  FAERTAINSPIQGSAADILKIAMINLDR--VLDKGGYKSKMLLQVHDEIVLEVLNEEIGA 847

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             K +V + M        +L V L  D    + WY AK
Sbjct: 848  IKELVTKTMESAI----SLSVPLIADENAGETWYEAK 880


>gi|94985766|ref|YP_605130.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
 gi|94556047|gb|ABF45961.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
          Length = 907

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 115/333 (34%), Positives = 169/333 (50%), Gaps = 31/333 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPAL 850
            I AL E   ++ L   ++ PL  + V+ + GR+H + +  T  TGRLS+  PNLQN P  
Sbjct: 605  IPALLEYRELEKLRGTYLDPLP-NLVNPRTGRLHTTFSQTTAATGRLSSLNPNLQNIPIR 663

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
             +   +IR+ FIA  G  LI ADY Q+ELR+LA +A+   M  AF+ G D H RTA  + 
Sbjct: 664  SELGREIRKGFIADEGYCLISADYSQIELRLLAAIADDPLMQQAFREGADIHRRTAAQVL 723

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                +A+   Q                       RR AK +NF + YG +   L+ +  +
Sbjct: 724  GLAEDAITPNQ-----------------------RRAAKTVNFGVLYGMSAHRLSNELGI 760

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
               EA + +D+++N    +  + E      R   +V TL GR R  P +KS  R  R   
Sbjct: 761  PYAEAAQFIDVYFNTYPGIRRYIERTLDFGREHGYVETLYGRRRYVPELKSQNRVIREAG 820

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAI 1090
            ER A N P+QG+AAD+   AM+ + +   L  LG +LLLQVHDE+++E P+  A+   A+
Sbjct: 821  ERLAYNMPIQGTAADIIKIAMVRLDQE--LDALGARLLLQVHDELLIEAPATQADRVAAL 878

Query: 1091 VVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
              E M +      +L V L+V+     NWY  K
Sbjct: 879  TREVMEQ----AAHLSVPLAVEVGTGPNWYDTK 907


>gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14]
 gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14]
          Length = 920

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 175/351 (49%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREACDAISALCEVC----SIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-IN 831
            + T +E  ++  A + + E       +  L+S ++  LP   + ++ + G +H S N   
Sbjct: 599  YVTSEEVLQSIRAKNPIVENILNYRGMKKLLSTYVDNLP---TLINKRTGHIHTSFNQAL 655

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P    D  +IR+ FI  PG     ADY Q+ELRI+AHL+  ++M
Sbjct: 656  TATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSGDENM 715

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AF+ G D H  TA  +                WH E       +     S+R+KAK  
Sbjct: 716  IEAFREGFDIHRATAAKI----------------WHEE-------IDKVTDSQRKKAKQA 752

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG T  GLA+   +S  EAK  +  ++    +V  + E  K+ +R + +  T+ G
Sbjct: 753  NFGIIYGITTYGLAQRMNISNSEAKDLITDYFKTFPKVQAYMEKAKEAARKNGYAETIFG 812

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R    I S   + R   ER AIN P+QGS AD+   AM++I    R + +  K++LQV
Sbjct: 813  RRRYLADINSHNGTVRGFAERNAINAPIQGSEADIIKVAMIKIWNRFRQEGIKSKMILQV 872

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+      E  E  + IV++ M   F    +L V L+ DA    NW  A
Sbjct: 873  HDELNFSVYPEEKEKVEQIVIQEMQNAF----HLDVPLTADAGWGNNWLEA 919


>gi|422440254|ref|ZP_16517068.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3]
 gi|422471378|ref|ZP_16547878.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2]
 gi|313837440|gb|EFS75154.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2]
 gi|314971647|gb|EFT15745.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3]
          Length = 883

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 171/306 (55%), Gaps = 33/306 (10%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 605  DGRVHTTYMQTIAATGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 664

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 665  MRIMAHVSGDQSLIDAFRSGQDFHTVTASHVF---------------------GVAP--E 701

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 702  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMAGYFSRFGKVHEYLEEVVD 761

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AM  ++ + 
Sbjct: 762  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAM--VATDQ 819

Query: 1059 RLKELGW--KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCA 1116
            +L E G   ++LLQVHDE+ILE   +  E  + IV + M         L V L+V     
Sbjct: 820  KLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHAM----ELSVPLTVSIGVG 875

Query: 1117 QNWYSA 1122
            ++W+ A
Sbjct: 876  RSWFEA 881


>gi|312874207|ref|ZP_07734241.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d]
 gi|311090277|gb|EFQ48687.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d]
          Length = 883

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 170/305 (55%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
            +G++H   L   T TGRLS+  PNLQN P   ++  +IR+AF+    +S L   DY Q+E
Sbjct: 605  DGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVE 664

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+++ K+ML+AFK G D H+ TAM ++  + N  E                PL+ 
Sbjct: 665  LRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFG-LSNLDEV--------------TPLM- 708

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GLA++  +S +EA+  ++ ++ +  ++  + +A  K
Sbjct: 709  ------RRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVK 762

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R   +  T++ R R  P I +   + R+  ER AIN+P+QGSAAD+   AM+++    
Sbjct: 763  LAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSEL 822

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              ++L  K++LQ+HDE++ + PSE  ++ K +V + M +       L V L  DA    N
Sbjct: 823  ERRKLKTKMILQIHDELLFDVPSEELDLIKILVPKIMQQA----AQLDVPLIADANWGHN 878

Query: 1119 WYSAK 1123
            WY  K
Sbjct: 879  WYEVK 883


>gi|384085835|ref|ZP_09997010.1| DNA polymerase I [Acidithiobacillus thiooxidans ATCC 19377]
          Length = 907

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 28/307 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH         TGRLS+  PNLQN P   +   +IRQAF+A  G  L+ ADY 
Sbjct: 626  INSRTGRVHTHFQQAVAATGRLSSSAPNLQNIPVRTEQGRRIRQAFVAEDGFYLLSADYS 685

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+    +L AF  G D H+ TA  ++     AV++                
Sbjct: 686  QIELRIMAHLSRDARLLQAFAEGQDIHAATAAEVFNLAPEAVDS---------------- 729

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
               DA    RR AK +NF + YG+TP GLA+   +    A+  +D ++     VLT+ E 
Sbjct: 730  ---DA----RRAAKAINFGLIYGQTPYGLAQQLGIEQSAARAYMDRYFERYPGVLTYMEQ 782

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +  +R   +V TL GR    P I+S   ++RN+ ERAAIN P+QG+AAD+   AM+ + 
Sbjct: 783  TRVLARQQGYVETLFGRRLYVPEIRSSNAARRNYAERAAINAPMQGTAADLIKKAMIAVD 842

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
               +      +++LQVHDE+ILE P    E A+A + E M     G  +L V L V    
Sbjct: 843  AWLQENPARGRMILQVHDELILEVPESGLEAARAALKERM----EGVADLAVPLLVGLGV 898

Query: 1116 AQNWYSA 1122
             ++W +A
Sbjct: 899  GKHWDAA 905


>gi|227892837|ref|ZP_04010642.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047]
 gi|227865339|gb|EEJ72760.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047]
          Length = 886

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/336 (33%), Positives = 173/336 (51%), Gaps = 34/336 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            +S + +   I  + S ++  L   +V   +GRVH   L   T TGRLS+  PNLQN P  
Sbjct: 581  VSEILDYRQIAKIQSTYVKGLL--DVIQPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTR 638

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AF+ + P   +   DY Q+ELR+LAH++    M +AFK G D HS TAM +
Sbjct: 639  TEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDAHMQEAFKTGYDIHSHTAMKI 698

Query: 910  YPHIRNAVETGQVLLEWHGEDKPP--VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
            + H+                D P    PL+       RR AK +NF I YG +  GL+++
Sbjct: 699  F-HL----------------DSPDQVTPLM-------RRHAKAVNFGIVYGISDYGLSKN 734

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              +S + AK+ +D ++ +  ++  +     +E+R   +  T++ R R  P I +   + R
Sbjct: 735  LGISRKRAKEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVR 794

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVA 1087
               ER AIN+P+QGSAAD+   AM+ + K      L  K+++QVHDE+I + P +  E  
Sbjct: 795  AFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETI 854

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            K IV E M         L V L  D+    NWY AK
Sbjct: 855  KKIVPEVMQSAV----KLDVPLIADSGWGHNWYDAK 886


>gi|390452160|ref|ZP_10237712.1| DNA polymerase I [Nitratireductor aquibiodomus RA22]
 gi|389660134|gb|EIM71852.1| DNA polymerase I [Nitratireductor aquibiodomus RA22]
          Length = 970

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 113/310 (36%), Positives = 159/310 (51%), Gaps = 29/310 (9%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AF+A  G  LI ADY 
Sbjct: 685  INPQTKRVHTSYALASTTTGRLSSSEPNLQNIPIRTAEGRKIRTAFVAPEGTKLISADYS 744

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+              +   E  PP  
Sbjct: 745  QIELRVLAHVADIPELKKAFADGLDIHAMTASEMF--------------DVPVEGMPP-- 788

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR+AK +NF I YG +  GLA    +  EEA   +  ++     +  + ++
Sbjct: 789  -------EVRRRAKAINFGIIYGISAFGLANQLGIPREEASAYIKRYFERFPGIKDYMDS 841

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADV---AMCAML 1052
             K ++R   +V T+ GR   +P I+S     R   ERAAIN P+QGSAAD+   AM  M 
Sbjct: 842  TKAQAREQGYVETVFGRRAHYPEIRSSNPQLRAFNERAAINAPIQGSAADIIRRAMARME 901

Query: 1053 EISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
                +A L+++  ++LLQVHDE+I E P    E A  ++ E M         L V L V+
Sbjct: 902  GALADAGLEDV--QMLLQVHDELIFEAPESKVEKAIPVICEVMKNAALPARALSVPLQVE 959

Query: 1113 AKCAQNWYSA 1122
            A+ A NW  A
Sbjct: 960  ARAASNWDEA 969



 Score = 45.4 bits (106), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 99/251 (39%), Gaps = 56/251 (22%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           +D L        +P++ K+  N  +D  ++   G+++ G   DTM M+            
Sbjct: 432 KDALEAIKAVMANPAVLKIGQNLKYDWLLMYRLGVEIVGVD-DTMLMS------------ 478

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
           Y L+A TG    +S    A           E ++G   I  K++ G          G+  
Sbjct: 479 YVLDAGTGSHGTVSHGMDALS---------ERWLGHKPIPYKELTG---------TGRKQ 520

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + +L+R       +Y+A D+  TL+L++ LK +L              + +   Y+
Sbjct: 521 VTFDMVDLERA-----TAYAAEDADITLRLWQVLKPRLA------------AEGLVSVYE 563

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   ++ +ME  G+ VDR+ LS +            +   + A +         +G
Sbjct: 564 RLERPMIPVIGRMEHRGVAVDRQILSRLSGDFAQTAAGIEDEIYELAGER------FTIG 617

Query: 660 SDTQLRQLLFG 670
           S  QL ++LFG
Sbjct: 618 SPKQLGEILFG 628


>gi|325570069|ref|ZP_08145994.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC 12755]
 gi|325156897|gb|EGC69068.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC 12755]
          Length = 881

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 181/346 (52%), Gaps = 36/346 (10%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLKEQAPIVEDILTYRQIAKIQSTYVEGLLKVIQGDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P   ++  KIR+AF+    + +I + DY Q+ELR+LAH+++   + +AF  
Sbjct: 622  SVDPNLQNIPIRLEEGRKIREAFVPRETDWVIYSSDYSQIELRVLAHISDDTHLKEAFIE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHSSTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  ++ + A++ +D ++ +   V T+ E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVIL 1077
             I S   + R   ER AINTP+QGSAAD+   AM++++K  + ++L   +LLQVHDE++ 
Sbjct: 780  DINSRNFNIRTFAERTAINTPIQGSAADILKIAMIDLAKRLKEEKLAATMLLQVHDELVF 839

Query: 1078 EGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            E P        A+V E M +       L V L  D+   + WY AK
Sbjct: 840  EVPESELPRLDALVKEVMEQAV----ALHVPLLTDSNWGKTWYDAK 881


>gi|422572448|ref|ZP_16648018.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1]
 gi|314929350|gb|EFS93181.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1]
          Length = 892

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 171/306 (55%), Gaps = 33/306 (10%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 614  DGRVHTTYMQTIAATGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 673

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 674  MRIMAHVSGDQSLIDAFRSGQDFHTVTASHVF---------------------GVAP--E 710

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 711  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMAGYFSRFGKVHEYLEEVVD 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AM  ++ + 
Sbjct: 771  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAM--VATDQ 828

Query: 1059 RLKELGW--KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCA 1116
            +L E G   ++LLQVHDE+ILE   +  E  + IV + M         L V L+V     
Sbjct: 829  KLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHAM----ELSVPLTVSIGVG 884

Query: 1117 QNWYSA 1122
            ++W+ A
Sbjct: 885  RSWFEA 890


>gi|381211869|ref|ZP_09918940.1| DNA polymerase I [Lentibacillus sp. Grbi]
          Length = 879

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 107/311 (34%), Positives = 172/311 (55%), Gaps = 33/311 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS---LIVA 872
            V   N ++H   N   T+TGRLS+  PNLQN P   ++  KIRQAF  VP      +  A
Sbjct: 598  VDQDNHKIHTRYNQALTQTGRLSSVDPNLQNIPIRLEEGRKIRQAF--VPSRKDWVMFAA 655

Query: 873  DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKP 932
            DY Q+ELR+LAH+A  + +++AF    D H++TAM+++   R  V +             
Sbjct: 656  DYSQIELRVLAHIAGDEKLVEAFTNNLDIHTQTAMDVFHVEREEVTSNM----------- 704

Query: 933  PVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
                        RR+AK +NF I YG +  GL++   ++ +EAK+ ++ +++   +V  +
Sbjct: 705  ------------RRQAKAVNFGIVYGISDYGLSQSLGITRKEAKQFIERYFDSYPDVKAY 752

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             +   +E++   +V T++ R R  P I S   ++R+  ER A+NTP+QGSAAD+   AM+
Sbjct: 753  MDDIVQEAKHQGYVTTIMNRRRYLPEITSRNFNRRSFAERTAMNTPIQGSAADIIKKAMI 812

Query: 1053 EISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
            ++ +  + ++L  ++LLQVHDE+ILE P E  +  K IV   M        +L V L VD
Sbjct: 813  DLHEKLKDEKLEARMLLQVHDELILEAPKEEIKQLKEIVPAVMENTV----DLNVPLKVD 868

Query: 1113 AKCAQNWYSAK 1123
             +   +W++AK
Sbjct: 869  YEYGDSWFNAK 879


>gi|346313979|ref|ZP_08855503.1| hypothetical protein HMPREF9022_01160 [Erysipelotrichaceae bacterium
            2_2_44A]
 gi|345907120|gb|EGX76836.1| hypothetical protein HMPREF9022_01160 [Erysipelotrichaceae bacterium
            2_2_44A]
          Length = 861

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 163/305 (53%), Gaps = 28/305 (9%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            K+G++H   N I T+TGRLS+  PNLQN    +++  +IR+AF+A  G+ L+ ADY Q+E
Sbjct: 584  KDGKIHTIFNQIQTQTGRLSSSEPNLQNISVRDEEGKEIRKAFVASAGHVLLSADYSQIE 643

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+A+ + M+DAF  G D H++TAM ++    +AV+                    
Sbjct: 644  LRMLAHMADEEVMIDAFNHGIDIHTKTAMQIFDVEHDAVD-------------------- 683

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               A+ RR AK +NF I YG++  GL+    ++ +EA   +D ++     + ++ +    
Sbjct: 684  ---ANMRRSAKTVNFGIVYGQSDFGLSEQLGITRKEAHAFIDKYFASYPNIKSFMDTTIA 740

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
                  +V TL  R R    I       R   +RAA+N P+QGSAAD+   AM+ I K  
Sbjct: 741  FCEEHGYVKTLFNRRRYIKEISDKNYMMREFGKRAAMNAPIQGSAADLIKLAMIHIYKKM 800

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            + +++  +++LQ+HDE+I +   +  E  + IV E M         LRV L  +A   + 
Sbjct: 801  QEEQVKSRMILQIHDELIFDVWEDELEQMRTIVEEGMQHAM----KLRVPLIAEANIGRT 856

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 857  WYDAK 861


>gi|417916933|ref|ZP_12560499.1| DNA-directed DNA polymerase [Streptococcus mitis bv. 2 str. SK95]
 gi|342827680|gb|EGU62062.1| DNA-directed DNA polymerase [Streptococcus mitis bv. 2 str. SK95]
          Length = 877

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 183/349 (52%), Gaps = 42/349 (12%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVVGLQDWILDDGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPVRLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P     +D   ++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----EDVTPNDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLANNLGISRKEAKTYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDE 1074
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K   L E G+  K+LLQVHDE
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDK--ALVEGGYQTKMLLQVHDE 832

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            ++LE P       K +V + M +       L V L  D      WY AK
Sbjct: 833  IVLEVPKSELAAVKVLVKQTMEEAI----QLSVPLIADENEGATWYEAK 877


>gi|310641223|ref|YP_003945981.1| DNA polymerase i [Paenibacillus polymyxa SC2]
 gi|386040274|ref|YP_005959228.1| DNA polymerase I [Paenibacillus polymyxa M1]
 gi|309246173|gb|ADO55740.1| DNA polymerase I [Paenibacillus polymyxa SC2]
 gi|343096312|emb|CCC84521.1| DNA polymerase I [Paenibacillus polymyxa M1]
          Length = 884

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 113/351 (32%), Positives = 184/351 (52%), Gaps = 34/351 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTE- 833
            ++T+ E  E      D +  + +  +I  L S ++  L    +S K G+VH         
Sbjct: 562  YSTDAEVLEKLAPYHDIVQNILQYRTIAKLQSTYVEGLL-KEISEKTGKVHTYFRQTVAA 620

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSML 892
            TGRLS++ PNLQN P   ++  KIR+ F+ + PG S++ ADY Q+ELR+LA +++ + + 
Sbjct: 621  TGRLSSQFPNLQNIPIRLEEGRKIRKVFVPSEPGWSILAADYSQIELRVLADISDDERLK 680

Query: 893  DAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLN 952
            +AF    D H++TA +++     AV++                         RR AK +N
Sbjct: 681  EAFVHDMDIHTKTASDVFGVPAEAVDSDM-----------------------RRSAKAVN 717

Query: 953  FSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGR 1012
            F I YG +  GL+++  ++ +EA + +D +++  Q V  + +   K+++ D +V TLL R
Sbjct: 718  FGIVYGISDYGLSQNLNITRKEAARFIDQYFDVFQGVRRYMDDIVKDAKRDGYVKTLLER 777

Query: 1013 ARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVH 1072
             R  P I +   +QR+  ER A+NTP+QG+AAD+   AM+++    R + L  ++LLQVH
Sbjct: 778  RRYLPEINASNFNQRSFAERTAMNTPIQGTAADIIKLAMVQMDAALRERNLRSRMLLQVH 837

Query: 1073 DEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            DE++ E P E  E  K +V   M         L V L  +     NWY AK
Sbjct: 838  DELVFEVPPEEMETMKELVPATMEAAL----KLAVPLKAEVSYGSNWYEAK 884


>gi|377809859|ref|YP_005005080.1| DNA polymerase I [Pediococcus claussenii ATCC BAA-344]
 gi|361056600|gb|AEV95404.1| DNA polymerase I [Pediococcus claussenii ATCC BAA-344]
          Length = 885

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 180/343 (52%), Gaps = 29/343 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARR 841
            ++ R   D +  +    +I  + S ++  L    V  K+ ++H + +   T+TGRLS+  
Sbjct: 570  EKLRGESDIVDDILNYRTISKIQSTYVEGLLKV-VHSKDQKIHTTYIQTLTQTGRLSSIE 628

Query: 842  PNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
            PNLQN P    +  KIRQAF+ +  G  ++ +DY Q+ELR+LAHL   K+M +AF    D
Sbjct: 629  PNLQNIPVRIDEGKKIRQAFVPSKEGWHILSSDYSQIELRVLAHLTGDKNMQEAFIENQD 688

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H+ TA+ ++  +++A E             P +          RR+AK +NF I YG +
Sbjct: 689  IHASTAVRIFG-LKDASEV-----------TPNI----------RRQAKAVNFGIVYGIS 726

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GL+++  +S  +AKK ++ ++ E   V  + +   K ++   +V T+  R R  P I 
Sbjct: 727  DYGLSQNIGISRSDAKKFIETYFQEFPGVKNYVDNIVKVAKEQGYVETISHRRRYLPDIN 786

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGP 1080
            S   SQR+  ER A+NTP+QGSAAD+   AM+++ +    + L  K+LLQVHDE+I E P
Sbjct: 787  SSNFSQRSFAERTAMNTPIQGSAADIIKIAMIKMQQELESRNLKTKMLLQVHDELIFEVP 846

Query: 1081 SESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E     K +V   M         L+V L V+     NWY AK
Sbjct: 847  DEEMNEIKKLVPSVMDSAM----KLKVPLKVETSWGNNWYEAK 885


>gi|345100617|pdb|2Y1I|A Chain A, Crystal Structure Of A S-Diastereomer Analogue Of The Spore
            Photoproduct In Complex With Fragment Dna Polymerase I
            From Bacillus Stearothermophilus
 gi|345100620|pdb|2Y1J|A Chain A, Crystal Structure Of A R-Diastereomer Analogue Of The Spore
            Photoproduct In Complex With Fragment Dna Polymerase I
            From Bacillus Stearothermophilus
          Length = 580

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 171/305 (56%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 305  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 364

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 365  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 401

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +N  I YG +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 402  TPNMRRQAKAVNKGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 461

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 462  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 519

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L  +LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 520  KEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 575

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 576  WYDAK 580


>gi|309807121|ref|ZP_07701098.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b]
 gi|308166472|gb|EFO68674.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b]
          Length = 512

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 170/305 (55%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
            +G++H   L   T TGRLS+  PNLQN P   ++  +IR+AF+    +S L   DY Q+E
Sbjct: 234  DGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVE 293

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+++ K+ML+AFK G D H+ TAM ++  + N  E                PL+ 
Sbjct: 294  LRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFG-LSNLDEV--------------TPLM- 337

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GLA++  +S +EA+  ++ ++ +  ++  + +A  K
Sbjct: 338  ------RRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVK 391

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R   +  T++ R R  P I +   + R+  ER AIN+P+QGSAAD+   AM+++    
Sbjct: 392  LAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSEL 451

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              ++L  K++LQ+HDE++ + PSE  ++ + +V E M +       L V L  DA    N
Sbjct: 452  ERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQA----AQLDVPLIADANWGHN 507

Query: 1119 WYSAK 1123
            WY  K
Sbjct: 508  WYEVK 512


>gi|395204352|ref|ZP_10395292.1| DNA polymerase I [Propionibacterium humerusii P08]
 gi|328907014|gb|EGG26780.1| DNA polymerase I [Propionibacterium humerusii P08]
          Length = 920

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 171/306 (55%), Gaps = 33/306 (10%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 642  DGRVHTTYMQTIAATGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 701

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                      P    +
Sbjct: 702  MRIMAHVSGDQSLIDAFRSGQDFHTVTASHVF-------------------GVAP----E 738

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 739  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMAGYFSRFGKVHEYLEEVVD 798

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AM  ++ + 
Sbjct: 799  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAM--VATDQ 856

Query: 1059 RLKELGW--KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCA 1116
            +L E G   ++LLQVHDE+ILE   +  E  + IV + M         L V L+V     
Sbjct: 857  KLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHAM----ELSVPLTVSIGVG 912

Query: 1117 QNWYSA 1122
            ++W+ A
Sbjct: 913  RSWFEA 918


>gi|154687041|ref|YP_001422202.1| DNA polymerase I [Bacillus amyloliquefaciens FZB42]
 gi|154352892|gb|ABS74971.1| PolA [Bacillus amyloliquefaciens FZB42]
          Length = 879

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 180/337 (53%), Gaps = 32/337 (9%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNG-RVHCSLN-INTETGRLSARRPNLQNQ 847
            D ++ + +   I  L S +I  L    V+ K+  +VH   N   T+TGRLS+  PNLQN 
Sbjct: 572  DIVAHILQYRQIGKLQSTYIEGLL--KVTRKDSHKVHTRFNQALTQTGRLSSTDPNLQNI 629

Query: 848  PALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
            P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF    D H++TA
Sbjct: 630  PIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTA 689

Query: 907  MNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLAR 966
            M+++ H+    E  Q +                     RR+AK +NF I YG +  GL++
Sbjct: 690  MDVF-HVSED-EVTQAM---------------------RRQAKAVNFGIVYGISDYGLSQ 726

Query: 967  DWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQ 1026
            +  ++ +EA   +D +      V  + E   +E++   +V TL+ R R  P + S   + 
Sbjct: 727  NLGITRKEAGAFIDRYLESFPGVKAYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNL 786

Query: 1027 RNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEV 1086
            R+  ER A+NTP+QGSAAD+   AM++++   + K L  +LLLQVHDE+I E P E  E+
Sbjct: 787  RSFAERTAMNTPIQGSAADIIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIEI 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             + +V E M         L V L  D     +WY AK
Sbjct: 847  LEKLVPEVMEHAL----ALDVPLKADYASGPSWYDAK 879


>gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
 gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
          Length = 914

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 155/294 (52%), Gaps = 24/294 (8%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++  +GR+H S N   T TGRLS+  PNLQN P   ++  +IR AFIA PG+  + ADY 
Sbjct: 634  INPADGRIHTSFNQTVTATGRLSSSNPNLQNIPVRTQEGRRIRGAFIAAPGHRFLAADYS 693

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q++LR+LAH +    +L+AF+   D H RTA  ++  +  A+ T                
Sbjct: 694  QIDLRVLAHYSADPMLLEAFQQDQDIHRRTAAEIF-RVNPAMVT---------------- 736

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                  A  RR AK +NF I YG +  GLA   + S +EA+  +D ++   + V T+ E 
Sbjct: 737  ------ADMRRVAKTINFGIIYGMSAFGLAEQLRCSRKEAQVFIDRYFELYRGVKTFMEE 790

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +++R D  V TLL R R+ P I S  + +R   ER AINTP+QG+AAD+   A +   
Sbjct: 791  IVEQARRDGFVRTLLKRRRQLPEINSSNKLRREFAERTAINTPIQGTAADIIKLAAIACD 850

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDL 1109
            +  R K    + LLQ+HDE+I E P +       +V + M         LRV+L
Sbjct: 851  RELRRKNFNTEALLQIHDELIFEVPEDEQAAVGKLVQQAMENVMELTVPLRVNL 904


>gi|448821039|ref|YP_007414201.1| DNA polymerase [Lactobacillus plantarum ZJ316]
 gi|448274536|gb|AGE39055.1| DNA polymerase [Lactobacillus plantarum ZJ316]
          Length = 887

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 180/334 (53%), Gaps = 29/334 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            ++ + +   I  + S +++ L  + +   + +VH   L   T+TGRLS+  PNLQN P  
Sbjct: 581  VANILQYRQISKIQSTYVIGLLDA-IHSADQKVHTRYLQTLTQTGRLSSVDPNLQNIPVR 639

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  KIRQAF+ +  G  +  +DY Q+ELR+LAH+ + ++M  AFKAG D H+ TAM +
Sbjct: 640  LEEGRKIRQAFVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAMRI 699

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            + H+ +A E             P +          RR+AK +NF I YG +  GL+++  
Sbjct: 700  F-HLNSAEEV-----------TPNI----------RRQAKAVNFGIVYGISDYGLSQNIG 737

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            ++ ++A+  +D ++ E   V  + +   + ++   +V T+  R R  P I S + +QR+ 
Sbjct: 738  ITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVETISHRRRYLPDINSKSFNQRSF 797

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER A+NTP+QGSAAD+   AM+++    +   L   +LLQVHDE+I E P E   V + 
Sbjct: 798  AERTAMNTPIQGSAADIIKIAMIKMQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVLEK 857

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +V   M    +    L V L V++     WY AK
Sbjct: 858  LVPSVM----DSAVQLAVPLKVESHYGDTWYDAK 887


>gi|452856558|ref|YP_007498241.1| DNA polymerase I [Bacillus amyloliquefaciens subsp. plantarum
            UCMB5036]
 gi|452080818|emb|CCP22583.1| DNA polymerase I [Bacillus amyloliquefaciens subsp. plantarum
            UCMB5036]
          Length = 879

 Score =  179 bits (455), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 180/337 (53%), Gaps = 32/337 (9%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNG-RVHCSLN-INTETGRLSARRPNLQNQ 847
            D ++ + +   I  L S +I  L    V+ K+  +VH   N   T+TGRLS+  PNLQN 
Sbjct: 572  DIVAHILQYRQIGKLQSTYIEGLL--KVTRKDSHKVHTRFNQALTQTGRLSSTDPNLQNI 629

Query: 848  PALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
            P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF    D H++TA
Sbjct: 630  PIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTA 689

Query: 907  MNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLAR 966
            M+++ H+    E  Q +                     RR+AK +NF I YG +  GL++
Sbjct: 690  MDVF-HVSED-EVTQAM---------------------RRQAKAVNFGIVYGISDYGLSQ 726

Query: 967  DWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQ 1026
            +  ++ +EA   +D +      V  + E   +E++   +V TL+ R R  P + S   + 
Sbjct: 727  NLGITRKEAGAFIDRYLESFPGVKAYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNL 786

Query: 1027 RNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEV 1086
            R+  ER A+NTP+QGSAAD+   AM++++   + K L  +LLLQVHDE+I E P E  E+
Sbjct: 787  RSFAERTAMNTPIQGSAADIIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIEI 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             + +V E M         L V L  D     +WY AK
Sbjct: 847  LEKLVPEVMEHAL----ALDVPLKADYASGPSWYDAK 879


>gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
 gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
          Length = 920

 Score =  179 bits (455), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 170/343 (49%), Gaps = 33/343 (9%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN-TETGRLSA 839
            Q+ R   + +  + +   +  L+  ++  LP     ++ + GR+H S N   T TGRLS+
Sbjct: 607  QQLRGKHEIVGDILDYRGLKKLLGTYVDALP---KLINTRTGRIHTSFNQTVTATGRLSS 663

Query: 840  RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
              PNLQN P   +D  +IR+AFI   G     ADY Q+ELR++AHL+    M++AF+ G 
Sbjct: 664  SEPNLQNIPVRGEDGKEIRKAFIPEEGCLFFSADYSQIELRVMAHLSGDAHMIEAFREGY 723

Query: 900  DFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGK 959
            D H+ TA  +Y     AVE                    D    ER KAK  NF I YG 
Sbjct: 724  DIHAATAAKIYG---RAVE--------------------DVTRDERTKAKRANFGIIYGI 760

Query: 960  TPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAI 1019
            T  GLA    +   EAK+ +D ++    +V  + E  K+ +R   +V T+  R R  P I
Sbjct: 761  TVFGLAERLDIDRNEAKQLIDGYFMMFPQVKDYMEHSKEVARTHGYVETIFHRRRYLPDI 820

Query: 1020 KSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEG 1079
             S   + R   ER AIN P+QGSAAD+   AM+ I +    + +  K++LQVHDE+    
Sbjct: 821  NSHNATVRGFAERNAINAPIQGSAADIIKVAMIRIYRRFMKEGIRSKMILQVHDELNFSV 880

Query: 1080 PSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
              E  E  + IV+E M + +     LRV L  D+    NW  A
Sbjct: 881  FPEEKERVERIVMEEMQQAY----PLRVPLVADSGWGTNWLEA 919


>gi|300767153|ref|ZP_07077065.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
            plantarum ATCC 14917]
 gi|300494972|gb|EFK30128.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
            plantarum ATCC 14917]
          Length = 887

 Score =  179 bits (455), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 180/334 (53%), Gaps = 29/334 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            ++ + +   I  + S +++ L  + +   + +VH   L   T+TGRLS+  PNLQN P  
Sbjct: 581  VANILQYRQISKIQSTYVIGLLDA-IHSADQKVHTRYLQTLTQTGRLSSVDPNLQNIPVR 639

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  KIRQAF+ +  G  +  +DY Q+ELR+LAH+ + ++M  AFKAG D H+ TAM +
Sbjct: 640  LEEGRKIRQAFVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAMRI 699

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            + H+ +A E             P +          RR+AK +NF I YG +  GL+++  
Sbjct: 700  F-HLNSAEEV-----------TPNI----------RRQAKAVNFGIVYGISDYGLSQNIG 737

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            ++ ++A+  +D ++ E   V  + +   + ++   +V T+  R R  P I S + +QR+ 
Sbjct: 738  ITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVETISHRRRYLPDINSKSFNQRSF 797

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER A+NTP+QGSAAD+   AM+++    +   L   +LLQVHDE+I E P E   V + 
Sbjct: 798  AERTAMNTPIQGSAADIIKIAMIKMQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVLEK 857

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +V   M    +    L V L V++     WY AK
Sbjct: 858  LVPSVM----DSAVQLAVPLKVESHYGDTWYDAK 887


>gi|375363320|ref|YP_005131359.1| DNA polymerase I [Bacillus amyloliquefaciens subsp. plantarum CAU
            B946]
 gi|371569314|emb|CCF06164.1| DNA polymerase I [Bacillus amyloliquefaciens subsp. plantarum CAU
            B946]
          Length = 879

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 180/337 (53%), Gaps = 32/337 (9%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNG-RVHCSLN-INTETGRLSARRPNLQNQ 847
            D ++ + +   I  L S +I  L    V+ K+  +VH   N   T+TGRLS+  PNLQN 
Sbjct: 572  DIVAYILQYRQIGKLQSTYIEGLL--KVTRKDSHKVHTRFNQALTQTGRLSSTDPNLQNI 629

Query: 848  PALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
            P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF    D H++TA
Sbjct: 630  PIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTA 689

Query: 907  MNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLAR 966
            M+++ H+    E  Q +                     RR+AK +NF I YG +  GL++
Sbjct: 690  MDVF-HVSED-EVTQAM---------------------RRQAKAVNFGIVYGISDYGLSQ 726

Query: 967  DWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQ 1026
            +  ++ +EA   +D +      V  + E   +E++   +V TL+ R R  P + S   + 
Sbjct: 727  NLGITRKEAGAFIDRYLESFPGVKAYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNL 786

Query: 1027 RNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEV 1086
            R+  ER A+NTP+QGSAAD+   AM++++   + K L  +LLLQVHDE+I E P E  E+
Sbjct: 787  RSFAERTAMNTPIQGSAADIIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIEI 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             + +V E M         L V L  D     +WY AK
Sbjct: 847  LEKLVPEVMEHAL----ALDVPLKADYASGPSWYDAK 879


>gi|394991801|ref|ZP_10384599.1| DNA polymerase I [Bacillus sp. 916]
 gi|393807346|gb|EJD68667.1| DNA polymerase I [Bacillus sp. 916]
          Length = 879

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 180/337 (53%), Gaps = 32/337 (9%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNG-RVHCSLN-INTETGRLSARRPNLQNQ 847
            D ++ + +   I  L S +I  L    V+ K+  +VH   N   T+TGRLS+  PNLQN 
Sbjct: 572  DIVAHILQYRQIGKLQSTYIEGLL--KVTRKDSHKVHTRFNQALTQTGRLSSTDPNLQNI 629

Query: 848  PALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
            P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF    D H++TA
Sbjct: 630  PIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTA 689

Query: 907  MNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLAR 966
            M+++ H+    E  Q +                     RR+AK +NF I YG +  GL++
Sbjct: 690  MDVF-HVSED-EVTQAM---------------------RRQAKAVNFGIVYGISDYGLSQ 726

Query: 967  DWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQ 1026
            +  ++ +EA   +D +      V  + E   +E++   +V TL+ R R  P + S   + 
Sbjct: 727  NLGITRKEAGAFIDRYLESFPGVKAYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNL 786

Query: 1027 RNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEV 1086
            R+  ER A+NTP+QGSAAD+   AM++++   + K L  +LLLQVHDE+I E P E  E+
Sbjct: 787  RSFAERTAMNTPIQGSAADIIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIEI 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             + +V E M         L V L  D     +WY AK
Sbjct: 847  LEKLVPEVMEHAL----ALDVPLKADYASGPSWYDAK 879


>gi|373501409|ref|ZP_09591766.1| hypothetical protein HMPREF9140_01884 [Prevotella micans F0438]
 gi|371949065|gb|EHO66939.1| hypothetical protein HMPREF9140_01884 [Prevotella micans F0438]
          Length = 920

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 117/349 (33%), Positives = 171/349 (48%), Gaps = 33/349 (9%)

Query: 779  FATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTE 833
            + T +E  ++  A   + E       +  L+S +I  L    ++ + GR+H S N   T 
Sbjct: 599  YVTNEEVLQSLKAKHPIVENILAYRGMKKLLSTYIDALPKL-INKRTGRIHTSFNQAATS 657

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P    D  +IR+ FI   G     ADY Q+ELRI+AHL+   +M++
Sbjct: 658  TGRLSSSEPNLQNIPVRTDDGKEIRKCFIPEKGCLFFSADYSQIELRIMAHLSEDPNMIE 717

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF+   D H  TA  +                WH         + D   ++R+KAK  NF
Sbjct: 718  AFRNNIDIHKVTAAKI----------------WHEN-------IDDVTETQRKKAKQANF 754

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG T  GLA+   +S  EA+K +D ++N   +V  + +   K++R   +V TL  R 
Sbjct: 755  GIIYGITTFGLAQRMGISNLEARKIIDGYFNTYPKVREFIDKSIKDARKKGYVETLFNRK 814

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHD 1073
            R  P I S   + R   ER AIN P+QGS AD+   AM+ I +    + +  K++LQVHD
Sbjct: 815  RYLPDINSHNATVRGFAERNAINAPIQGSEADIIKVAMINIQQRFERENIRSKMILQVHD 874

Query: 1074 EVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            E+      E   + + IV+E M + +     L V L  DA    NW  A
Sbjct: 875  ELNFSVIPEEKNLVENIVLEEMQRAY----ELNVPLVADAGWGNNWLEA 919



 Score = 47.4 bits (111), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 89/243 (36%), Gaps = 56/243 (23%)

Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEAL 487
           F P +E+  I+K+  N  +D  VL NYG+ + G   DTM    +     R    Y  E L
Sbjct: 397 FKPLYENEEIEKIGQNIKYDYEVLRNYGITIRGEFFDTMIAHYVIQPELRHNMDYLAETL 456

Query: 488 TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
            G +                          I + ++ G     K  +   + +++P E  
Sbjct: 457 LGYK-------------------------TIHIDELIG----PKGKNQKNMRSLSPTE-- 485

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
                     Y+  D+  TL+L   LK KL     K  G         + +++   P   
Sbjct: 486 -------VCDYACEDADITLRLKNVLKDKL-----KKSGAD-------ELFRKIEMPLIP 526

Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
           +L +ME  G+ +D E L+E  ++             + A +        N+ S  Q+  +
Sbjct: 527 VLAEMEINGVCLDTEALNETSRIFNERMNGYEQNIYELAGES------FNISSPRQVGNI 580

Query: 668 LFG 670
           LFG
Sbjct: 581 LFG 583


>gi|308180373|ref|YP_003924501.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
            plantarum ST-III]
 gi|418275033|ref|ZP_12890445.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
            plantarum NC8]
 gi|308045864|gb|ADN98407.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
            plantarum ST-III]
 gi|376009504|gb|EHS82832.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
            plantarum NC8]
          Length = 882

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 180/334 (53%), Gaps = 29/334 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            ++ + +   I  + S +++ L  + +   + +VH   L   T+TGRLS+  PNLQN P  
Sbjct: 576  VANILQYRQISKIQSTYVIGLLDA-IHSADQKVHTRYLQTLTQTGRLSSVDPNLQNIPVR 634

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  KIRQAF+ +  G  +  +DY Q+ELR+LAH+ + ++M  AFKAG D H+ TAM +
Sbjct: 635  LEEGRKIRQAFVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAMRI 694

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            + H+ +A E             P +          RR+AK +NF I YG +  GL+++  
Sbjct: 695  F-HLNSAEEV-----------TPNI----------RRQAKAVNFGIVYGISDYGLSQNIG 732

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            ++ ++A+  +D ++ E   V  + +   + ++   +V T+  R R  P I S + +QR+ 
Sbjct: 733  ITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVETISHRRRYLPDINSKSFNQRSF 792

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER A+NTP+QGSAAD+   AM+++    +   L   +LLQVHDE+I E P E   V + 
Sbjct: 793  AERTAMNTPIQGSAADIIKIAMIKMQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVLEK 852

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +V   M    +    L V L V++     WY AK
Sbjct: 853  LVPSVM----DSAVQLAVPLKVESHYGDTWYDAK 882


>gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1]
 gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1]
          Length = 893

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 118/334 (35%), Positives = 175/334 (52%), Gaps = 34/334 (10%)

Query: 790  DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQN 846
            + I  + E   I  L S +I  LP     V+ K GR+H S N   T TGRLS+  PNLQN
Sbjct: 589  EIIPLILEYRKIQKLKSTYIDALP---KMVNPKTGRIHASFNQTGTATGRLSSSDPNLQN 645

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
             P   ++  +IR+A +    N  IV ADY Q+ELRILAHL+  +++L AF+ G D H+ T
Sbjct: 646  LPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLT 705

Query: 906  AMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            A  ++                    KP     ++     RR  KM+NFSI YG TP GL+
Sbjct: 706  ASRIF------------------NVKP-----EEVTEEMRRAGKMVNFSIIYGVTPYGLS 742

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
                V V+EA+K +  ++    +V  + +    E++   +V TL GR R  P + +  R+
Sbjct: 743  VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRN 802

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAE 1085
             +   ER AINTP+QG+AAD+   AM+EI +  + +++  K+++QVHDE++ E P+E   
Sbjct: 803  TQAEGERIAINTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPNEE-- 860

Query: 1086 VAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
              K  +VE +         L V L VD    + W
Sbjct: 861  --KDALVELVKDRMTNVVKLSVPLEVDVTIGKTW 892


>gi|384266458|ref|YP_005422165.1| DNA polymerase I [Bacillus amyloliquefaciens subsp. plantarum YAU
            B9601-Y2]
 gi|387899498|ref|YP_006329794.1| DNA polymerase I [Bacillus amyloliquefaciens Y2]
 gi|380499811|emb|CCG50849.1| DNA polymerase I [Bacillus amyloliquefaciens subsp. plantarum YAU
            B9601-Y2]
 gi|387173608|gb|AFJ63069.1| DNA polymerase I [Bacillus amyloliquefaciens Y2]
          Length = 879

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 180/337 (53%), Gaps = 32/337 (9%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNG-RVHCSLN-INTETGRLSARRPNLQNQ 847
            D ++ + +   I  L S +I  L    V+ K+  +VH   N   T+TGRLS+  PNLQN 
Sbjct: 572  DIVAYILQYRQIGKLQSTYIEGLL--KVTRKDSHKVHTRFNQALTQTGRLSSTDPNLQNI 629

Query: 848  PALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
            P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF    D H++TA
Sbjct: 630  PIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTA 689

Query: 907  MNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLAR 966
            M+++ H+    E  Q +                     RR+AK +NF I YG +  GL++
Sbjct: 690  MDVF-HVSED-EVTQAM---------------------RRQAKAVNFGIVYGISDYGLSQ 726

Query: 967  DWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQ 1026
            +  ++ +EA   +D +      V  + E   +E++   +V TL+ R R  P + S   + 
Sbjct: 727  NLGITRKEAGAFIDRYLESFPGVKAYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNL 786

Query: 1027 RNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEV 1086
            R+  ER A+NTP+QGSAAD+   AM++++   + K L  +LLLQVHDE+I E P E  E+
Sbjct: 787  RSFAERTAMNTPIQGSAADIIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIEI 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             + +V E M         L V L  D     +WY AK
Sbjct: 847  LEKLVPEVMEHAL----ALDVPLKADYASGPSWYDAK 879


>gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2]
 gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2]
          Length = 893

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 118/334 (35%), Positives = 174/334 (52%), Gaps = 34/334 (10%)

Query: 790  DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQN 846
            + I  + E   I  L S +I  LP     V+ K GR+H S N   T TGRLS+  PNLQN
Sbjct: 589  EIIPLILEYRKIQKLKSTYIDALP---KMVNPKTGRIHASFNQTGTATGRLSSSDPNLQN 645

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
             P   ++  +IR+A +    N  IV ADY Q+ELRILAHL+  +++L AF+ G D H+ T
Sbjct: 646  LPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLKAFEEGIDVHTLT 705

Query: 906  AMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            A  ++                    KP     ++     RR  KM+NFSI YG TP GL+
Sbjct: 706  ASRIF------------------NVKP-----EEVTEEMRRAGKMVNFSIIYGVTPYGLS 742

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
                V V+EA+K +  ++    +V  + +    E++   +V TL GR R  P + +  R+
Sbjct: 743  VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRN 802

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAE 1085
             +   ER AINTP+QG+AAD+   AM+EI +  + +++  K+++QVHDE++ E P E   
Sbjct: 803  TQAEGERIAINTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPDEE-- 860

Query: 1086 VAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
              K  +VE +         L V L VD    + W
Sbjct: 861  --KDALVELVKDRMTNVVKLSVPLEVDVTIGKTW 892



 Score = 48.9 bits (115), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 104/259 (40%), Gaps = 59/259 (22%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           +++L +     EDP  K V  N  FD  VL   G++    H DTM  A L + +   E  
Sbjct: 364 KEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPHFDTMIAAYLLEPN---EKK 420

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
           ++L+ L    K +     +YQ+ MS  +   GF    S  D+                  
Sbjct: 421 FNLDDLA--LKFLGYKMTSYQELMSFSSPLFGF----SFADV------------------ 456

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
            PVE+          +YS  D+  T +LYK L  KL E   +            + + + 
Sbjct: 457 -PVEKAA--------NYSCEDADITYRLYKILSLKLHEADLE------------NVFYKI 495

Query: 602 WQPFGEILVKMETEGMLVDREYLSEI-EKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
             P   +L +ME  G+ VD E+L ++ E+  +  +E A   +R             N+ S
Sbjct: 496 EMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRIAGEP-------FNINS 548

Query: 661 DTQLRQLLF---GGKPNSK 676
             Q+ ++LF   G KP  K
Sbjct: 549 PKQVSRILFEKLGIKPRGK 567


>gi|410459279|ref|ZP_11313031.1| DNA polymerase I [Bacillus azotoformans LMG 9581]
 gi|409930472|gb|EKN67471.1| DNA polymerase I [Bacillus azotoformans LMG 9581]
          Length = 878

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 182/347 (52%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCSLN-INTETGRL 837
            + D +  L +   +  L+ NF  +  L+ + + G          ++H   N   T+TGRL
Sbjct: 559  SADVLEKLVDAHEMIPLLLNFRQLGKLKSTYIDGLLKVVHKDTSKIHTRFNQALTQTGRL 618

Query: 838  SARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFK 896
            S+  PNLQN P   ++  KIRQAFI +  G  +  ADY Q+ELR++AH++  + ++ AF+
Sbjct: 619  SSTEPNLQNIPIRMEEGRKIRQAFIPSEQGWVIFAADYSQIELRVMAHISQDEKLMAAFR 678

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H++TAM+++ H+                        ++  ++ RR+AK +NF I 
Sbjct: 679  EGKDIHTKTAMDVF-HVNE----------------------EEVTSNMRRQAKAVNFGII 715

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+++  ++ +EA K +D +      V  + +     +R + +V T+L R R  
Sbjct: 716  YGISDFGLSQNLGITRKEAGKFIDQYLKSFPGVKKYMDDIILTARANGYVTTILNRRRYL 775

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER A+NTP+QGSAAD+   AM+++++  + ++L  +LLLQVHDE+I
Sbjct: 776  PDITSRNFNIRSFAERTAMNTPIQGSAADIIKKAMIDMAERLKKEQLQTRLLLQVHDELI 835

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E P    E  K IV E M         L V L VD      W+ AK
Sbjct: 836  FEAPENEIEKLKQIVPEVMENAV----KLDVPLKVDYCFGPTWFDAK 878


>gi|182417808|ref|ZP_02949122.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237667599|ref|ZP_04527583.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378271|gb|EDT75803.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237655947|gb|EEP53503.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 956

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 182/351 (51%), Gaps = 35/351 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            ++T QE  E      + I  +     I  + S ++  L+  NV  ++GR+H + N   T 
Sbjct: 635  YSTNQEVLEKLLDKHEIIPKIMYYRQITKISSTYVEGLK--NVIDEDGRIHSNFNQTVTT 692

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVP-GNSLIVADYGQLELRILAHLANCKSML 892
            TGRLS+  PNLQN P   +   +IR+ FI +  G++L+  DY Q+ELR+LAH+A  ++M+
Sbjct: 693  TGRLSSTDPNLQNIPIRHELGREIRKVFIPLQEGDTLVSCDYSQIELRVLAHIAGDENMI 752

Query: 893  DAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLN 952
            DAFK   D H++TA  ++                    K PV   +D  +  R +AK +N
Sbjct: 753  DAFKHHSDIHTKTASEVF--------------------KVPV---EDVTSLMRSRAKAVN 789

Query: 953  FSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGR 1012
            F I YG +   L++D K+   EA++ +++++    ++ ++ E    E+    +V T+L R
Sbjct: 790  FGIVYGISAFSLSQDLKIPKAEAQEYMNIYFERYPKIKSYLENIVSEAEEKGYVLTILNR 849

Query: 1013 ARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVH 1072
             R  P I +  +  +   ER A+N P+QGSAAD+   AM+ +    +  ++  KL+LQVH
Sbjct: 850  RRFIPEINASNKIVKALGERLAMNAPIQGSAADIIKIAMINVYNKLKESKMQSKLILQVH 909

Query: 1073 DEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            DE+IL       E  K IVV+ M         L V L VD    + WY AK
Sbjct: 910  DELILNVKENEFEEVKKIVVDEMENAI----KLSVGLDVDINSGKTWYEAK 956


>gi|350271241|ref|YP_004882549.1| DNA polymerase I [Oscillibacter valericigenes Sjm18-20]
 gi|348596083|dbj|BAL00044.1| DNA polymerase I [Oscillibacter valericigenes Sjm18-20]
          Length = 884

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 162/304 (53%), Gaps = 28/304 (9%)

Query: 821  NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            +GRV  S  +  T TGRLS+  PNLQN P       +IR+ F+  PGN L+ ADY Q+EL
Sbjct: 607  DGRVRTSFQMTVTATGRLSSTEPNLQNIPTRTDLGSEIRKMFVPEPGNVLVDADYSQIEL 666

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAH++  + M  AF +GGDFH+ TA  ++   R                       +D
Sbjct: 667  RLLAHISGDEGMRAAFLSGGDFHAETASKVFGVAR-----------------------ED 703

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RR+AK +NF I YG +   L +D  VS +EAK  +D ++     V ++ +   ++
Sbjct: 704  VTHEMRRRAKAVNFGIVYGISAFSLGQDIGVSQKEAKAYMDAYFATFPGVRSYMDRVVEQ 763

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            ++ D +V TL  R R  P + S   + R+  +R A+N P+QG+AAD+   AM+ + K  +
Sbjct: 764  AKADGYVETLYHRRRDLPELASSNFNLRSFGQRVALNMPIQGTAADIMKLAMIAVWKRLK 823

Query: 1060 LKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             +    KL+LQVHDE+I+E P   A  A  ++ E M     G  +L V L+ DA   +NW
Sbjct: 824  SELPRAKLVLQVHDELIVECPEGDARRAAVLLAEEM----EGVAHLSVPLTADAYWGKNW 879

Query: 1120 YSAK 1123
              AK
Sbjct: 880  LEAK 883


>gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
 gi|418045679|ref|ZP_12683774.1| DNA polymerase I [Thermotoga maritima MSB8]
 gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
 gi|351676564|gb|EHA59717.1| DNA polymerase I [Thermotoga maritima MSB8]
          Length = 893

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 118/334 (35%), Positives = 175/334 (52%), Gaps = 34/334 (10%)

Query: 790  DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQN 846
            + I  + E   I  L S +I  LP     V+ K GR+H S N   T TGRLS+  PNLQN
Sbjct: 589  EIIPLILEYRKIQKLKSTYIDALP---KMVNPKTGRIHASFNQTGTATGRLSSSDPNLQN 645

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
             P   ++  +IR+A +    N  IV ADY Q+ELRILAHL+  +++L AF+ G D H+ T
Sbjct: 646  LPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLT 705

Query: 906  AMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            A  ++                    KP     ++     RR  KM+NFSI YG TP GL+
Sbjct: 706  ASRIF------------------NVKP-----EEVTEEMRRAGKMVNFSIIYGVTPYGLS 742

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
                V V+EA+K +  ++    +V  + +    E++   +V TL GR R  P + +  R+
Sbjct: 743  VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRN 802

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAE 1085
             +   ER AINTP+QG+AAD+   AM+EI +  + +++  K+++QVHDE++ E P+E   
Sbjct: 803  TQAEGERIAINTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPNEE-- 860

Query: 1086 VAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
              K  +VE +         L V L VD    + W
Sbjct: 861  --KDALVELVKDRMTNVVKLSVPLEVDVTIGKTW 892


>gi|354603286|ref|ZP_09021285.1| hypothetical protein HMPREF9450_00200 [Alistipes indistinctus YIT
            12060]
 gi|353349163|gb|EHB93429.1| hypothetical protein HMPREF9450_00200 [Alistipes indistinctus YIT
            12060]
          Length = 1094

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 113/333 (33%), Positives = 170/333 (51%), Gaps = 30/333 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            I  + E   +  L+S ++  L    V+   GR+H S N   T TGRLS+  PNLQN P  
Sbjct: 789  IGMILEYRGLRKLLSTYVDALP-QLVNPLTGRIHTSFNQAVTATGRLSSTNPNLQNIPIR 847

Query: 851  EKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
            +    +IR+AFI    + +++ ADY Q+ELR++AHL+  ++M++AF  G D H+ TA   
Sbjct: 848  DDRGREIRKAFIPSSDDRVLLSADYSQVELRLMAHLSGDRAMIEAFGHGEDIHTATAA-- 905

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
                          L +H   +       D    +RR+AK  NF I YG +  GLA+   
Sbjct: 906  --------------LLFHAAKE-------DVTREQRRRAKTANFGIIYGISAFGLAQRLN 944

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            +   EAK+ +D ++    ++  + E    ++R + +V TL GR R  P I+S     R  
Sbjct: 945  IPRTEAKEIIDGYFQSYPDIRQYMERVIDQARENGYVETLFGRKRMLPDIRSGNAVVRGL 1004

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER AIN P+QG AAD+   AM+ +    R K L  K++LQVHDE++L+      E  + 
Sbjct: 1005 SERNAINAPIQGGAADIMKLAMIAVHGELRRKGLQSKIILQVHDELVLDVLLSEQEQVRE 1064

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            IV+ CM     G   L+V L  +    +NW  A
Sbjct: 1065 IVIRCM----EGAAELKVKLVAECGVGRNWLEA 1093


>gi|336322733|ref|YP_004602700.1| DNA polymerase I [Flexistipes sinusarabici DSM 4947]
 gi|336106314|gb|AEI14132.1| DNA polymerase I [Flexistipes sinusarabici DSM 4947]
          Length = 793

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 113/311 (36%), Positives = 167/311 (53%), Gaps = 28/311 (9%)

Query: 814  GSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA 872
            G  V+ K GRVH + N + T TGRLS+  PNLQN P   K   K+R AFI   G SLI  
Sbjct: 510  GDYVNSKTGRVHSTFNQVGTATGRLSSSNPNLQNIPQRGKIASKVRSAFIPEDGYSLISF 569

Query: 873  DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKP 932
            DY Q+ELR+LAHL+  +++L+A+K   D H +TA +++    N  E              
Sbjct: 570  DYSQIELRLLAHLSGDETLLEAYKKDADIHKKTAASIF----NIDE-------------- 611

Query: 933  PVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
                 KD  ++ RR AK +NF I YG +P GLARD  VS +EAK+ +D ++    +V ++
Sbjct: 612  -----KDVDSNLRRIAKAVNFGIIYGLSPYGLARDTGVSQKEAKEFIDKYFKLYPKVDSY 666

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             +   K ++   +  TL GR R    + S  ++  +  ER AIN P+QGSAAD+   AML
Sbjct: 667  IKDALKRAKEQGYTETLFGRKRFVKELSSKNKALSSRAERIAINAPIQGSAADIIKKAML 726

Query: 1053 EISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
            +       K++  +L+LQVHDE+I E      +     + + M K      +L V++SV 
Sbjct: 727  DTFAYLADKKVNGRLILQVHDELIFEIKDGEVDTVFQKLKDIMEKIV----HLDVNMSVK 782

Query: 1113 AKCAQNWYSAK 1123
             K  ++  + K
Sbjct: 783  GKIGKDLGALK 793


>gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter daltonii FRC-32]
 gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter daltonii FRC-32]
          Length = 891

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 158/307 (51%), Gaps = 28/307 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  ++GR+H S N   T TGRLS+  PNLQN P   ++   IR AFIA  G  ++ ADY 
Sbjct: 611  VYSESGRIHTSYNQAVTNTGRLSSSEPNLQNIPIRSEEGRSIRHAFIAEEGCLILSADYS 670

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAHL+  +   DAF    D H+RTA  ++      +  G V  E          
Sbjct: 671  QIELRVLAHLSQDRVFCDAFAKDEDIHTRTAAEVF-----GLFPGMVTPEM--------- 716

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR+AK +NF + YG+ P  LA++  VS + AK+ +D +++       + + 
Sbjct: 717  ---------RRQAKTINFGVIYGQGPFSLAKELGVSTKVAKEFIDNYFDRHAGARVFLDG 767

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+    HV T+LGR    P I S   + R+  +R AIN P+QGSAAD+   AM+ +S
Sbjct: 768  CVREAEAKGHVTTILGRRLPIPDINSTNGNIRSFAQRNAINYPIQGSAADIIKQAMVRVS 827

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
               R + L  +L++QVHDE++ E P E     + +V   M         LRV L VD   
Sbjct: 828  GRMRREGLKSRLIMQVHDELVFEVPLEEKLTMEKLVCHEMENAL----TLRVPLKVDVNF 883

Query: 1116 AQNWYSA 1122
              NW  A
Sbjct: 884  GSNWSEA 890



 Score = 46.2 bits (108), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 37/72 (51%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L    P   DP+IKK+  N  +D  VL   G+++ G   DTM  + L + +R + G  +
Sbjct: 364 VLQALRPLLLDPAIKKIGQNIKYDYQVLRRAGIEMEGIWCDTMLASYLLNPNRSSHGLNA 423

Query: 484 LEALTGDRKVMS 495
           L     D K++S
Sbjct: 424 LAVELLDHKMIS 435


>gi|392940657|ref|ZP_10306301.1| LOW QUALITY PROTEIN: DNA polymerase I [Thermoanaerobacter
            siderophilus SR4]
 gi|392292407|gb|EIW00851.1| LOW QUALITY PROTEIN: DNA polymerase I [Thermoanaerobacter
            siderophilus SR4]
          Length = 872

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 116/354 (32%), Positives = 188/354 (53%), Gaps = 41/354 (11%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI---LPLQGSNVSGKNGRVHCSL-NI 830
            ++T+ E  E      D +S + E   +  L S +I   LPL       +N RVH +   +
Sbjct: 551  YSTDSEVLEQLVPYNDVVSDIIEYRQLTKLKSTYIDGFLPLMD-----ENNRVHSNFKQM 605

Query: 831  NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCK 889
             T TGR+S+  PNLQN P  E+   +IR+AFI    +  IV ADY Q+ELR+LAH++  +
Sbjct: 606  VTATGRISSTEPNLQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDE 665

Query: 890  SMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAK 949
             ++++F    D H RTA  ++                       VP+ K      RR AK
Sbjct: 666  KLIESFMNNEDIHLRTAAEVFK----------------------VPMEK-VTPEMRRAAK 702

Query: 950  MLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTL 1009
             +NF I YG +  GL+RD K+S +EAK+ ++ ++   + V  + E   + ++ + +V T+
Sbjct: 703  AVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTI 762

Query: 1010 LGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLL 1069
            + R R  P I S   +QR+  ER A+N P+QGSAAD+   AM+++ ++ +  +L  +L+L
Sbjct: 763  MNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLIL 822

Query: 1070 QVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            QVHDE++++   +  ++ K I+ E M         L+V L V+     NW+ AK
Sbjct: 823  QVHDELVVDTYKDEVDIVKKILKENMENVI----KLKVPLVVEIGIGPNWFLAK 872


>gi|257875613|ref|ZP_05655266.1| DNA polymerase I [Enterococcus casseliflavus EC20]
 gi|257809779|gb|EEV38599.1| DNA polymerase I [Enterococcus casseliflavus EC20]
          Length = 881

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 180/346 (52%), Gaps = 36/346 (10%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLKEQAPIVEDILTYRQIAKIQSTYVEGLLKVIQGDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P   ++  KIR+AF+    + +I + DY Q+ELR+LAH+++   + +AF  
Sbjct: 622  SVDPNLQNIPIRLEEGRKIREAFVPREADWVIYSSDYSQIELRVLAHISDDTHLKEAFIE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHSSTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  ++ + A++ +D ++ +   V T+ E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVIL 1077
             I S   + R   ER AINTP+QGSAAD+   AM+++ K  + ++L   +LLQVHDE++ 
Sbjct: 780  DINSRNFNIRTFAERTAINTPIQGSAADILKIAMIDLVKRLKEEKLAATMLLQVHDELVF 839

Query: 1078 EGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            E P        A+V E M +       L V L  D+   + WY AK
Sbjct: 840  EVPESELPRLDALVKEVMEQAV----ALHVPLLTDSNWGKTWYDAK 881


>gi|407473451|ref|YP_006787851.1| DNA polymerase I [Clostridium acidurici 9a]
 gi|407049959|gb|AFS78004.1| DNA polymerase I [Clostridium acidurici 9a]
          Length = 889

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 110/311 (35%), Positives = 166/311 (53%), Gaps = 30/311 (9%)

Query: 816  NVSGKN-GRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN-SLIVA 872
            NV  KN  +VH S N   T TGR+S+  PNLQN P   ++  KIR+ FI    + +L  A
Sbjct: 606  NVMDKNTNKVHSSFNQTITTTGRISSTEPNLQNIPIRTEEGRKIRKVFIPKSEDYTLADA 665

Query: 873  DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKP 932
            DY Q+ELR+LAHL+N   +++AF  G D H RTA  ++                   D P
Sbjct: 666  DYSQIELRVLAHLSNDPKLIEAFFTGEDIHRRTASEVF-------------------DVP 706

Query: 933  PVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
                L +  ++ R  AK +NF I YG +  GL+RD  +S +++K+ +D ++     V  +
Sbjct: 707  ----LDEVTSTMRSNAKAVNFGIIYGISDFGLSRDLNISRKQSKEYIDNYFERYTNVKGF 762

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             ++  K+ +   +V T+L R R  P + S   + R+  ER A+NTP+QGSAAD+   AM+
Sbjct: 763  MDSIIKDGKKKGYVETILKRRRYLPELSSRNFNIRSFGERMAMNTPIQGSAADIIKVAMV 822

Query: 1053 EISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVD 1112
             +    + ++L  +L+LQVHDE+I+E   +  E  K ++   M K       L V L VD
Sbjct: 823  GVYYELKQRKLKSRLILQVHDELIVEAYKDEIEEVKELLRNIMEKSI----KLNVPLKVD 878

Query: 1113 AKCAQNWYSAK 1123
             K   +WY  K
Sbjct: 879  MKTGDSWYETK 889


>gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302]
 gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302]
          Length = 920

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 177/354 (50%), Gaps = 32/354 (9%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN 829
            G   +N ++    Q  R     ++ + +   +  L+  ++  L    ++ + G +H S N
Sbjct: 597  GQYVTNEEVL---QSLRAKHPIVADILDYRGLKKLLGTYVEALP-KLINKRTGHIHTSFN 652

Query: 830  -INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
               T TGRLS+  PNLQN P   +D  +IR+ F+         ADY Q+ELRI+AHL+  
Sbjct: 653  QALTATGRLSSSDPNLQNIPVRSEDGKEIRKCFVPEQDCMFFSADYSQIELRIMAHLSGD 712

Query: 889  KSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKA 948
            ++M++AF+ G D H+ TA  +                WH +       + D  + ER+KA
Sbjct: 713  ENMIEAFRQGFDIHAATAAKI----------------WHKD-------IADVTSEERKKA 749

Query: 949  KMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHT 1008
            K  NF I YG T  GLA+  ++   EA++ ++ ++    +V  + E  K+E+R   +  T
Sbjct: 750  KQANFGIIYGITTYGLAQRMEIDNREARELIEGYFATFPKVRAYMEQAKEEARRKGYAET 809

Query: 1009 LLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLL 1068
            L GR R  P I S   + R   ER AIN P+QGS AD+   AM+ I +  R + +  K++
Sbjct: 810  LFGRRRYLPDITSKNGTVRGFAERNAINAPIQGSEADIIKIAMIRIWQRFRAENIRSKMI 869

Query: 1069 LQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            LQVHDE+      +  E  + IV+E M     G   L+V L  DA   +NW  A
Sbjct: 870  LQVHDELNFSVYPDEKERVEKIVLEEM----QGAYQLQVPLIADAGWGKNWLEA 919



 Score = 46.2 bits (108), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           +N F P +EDPSI K+  N  +D  VL+NYG+ + G   DTM
Sbjct: 394 VNIFKPVYEDPSILKIGQNLKYDYEVLKNYGVTLGGKMFDTM 435


>gi|38146979|gb|AAR11874.1| DNA polymerase I [Thermoanaerobacterium sp. AZ3B.1]
          Length = 833

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 116/354 (32%), Positives = 188/354 (53%), Gaps = 41/354 (11%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI---LPLQGSNVSGKNGRVHCSL-NI 830
            ++T+ E  E      D +S + E   +  L S +I   LPL       +N RVH +   +
Sbjct: 512  YSTDSEVLEQLVPYNDVVSDIIEYRQLTKLKSTYIDGFLPLMD-----ENNRVHSNFKQM 566

Query: 831  NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCK 889
             T TGR+S+  PNLQN P  E+   +IR+AFI    +  IV ADY Q+ELR+LAH++  +
Sbjct: 567  VTATGRISSTEPNLQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDE 626

Query: 890  SMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAK 949
             ++++F    D H RTA  ++                       VP+ K      RR AK
Sbjct: 627  KLIESFMNNEDIHLRTAAEVFK----------------------VPMEK-VTPEMRRAAK 663

Query: 950  MLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTL 1009
             +NF I YG +  GL+RD K+S +EAK+ ++ ++   + V  + E   + ++ + +V T+
Sbjct: 664  AVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTI 723

Query: 1010 LGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLL 1069
            + R R  P I S   +QR+  ER A+N P+QGSAAD+   AM+++ ++ +  +L  +L+L
Sbjct: 724  MNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLIL 783

Query: 1070 QVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            QVHDE++++   +  ++ K I+ E M         L+V L V+     NW+ AK
Sbjct: 784  QVHDELVVDTYKDEVDIVKKILKENMENVI----KLKVPLVVEIGIGPNWFLAK 833


>gi|359396295|ref|ZP_09189347.1| DNA polymerase I [Halomonas boliviensis LC1]
 gi|357970560|gb|EHJ93007.1| DNA polymerase I [Halomonas boliviensis LC1]
          Length = 894

 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 161/303 (53%), Gaps = 28/303 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GRVH S +   T TGRLS+  PNLQN P   ++  KIRQAFIA PG  ++ ADY Q+EL
Sbjct: 618  TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAFIARPGYRIVAADYSQIEL 677

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K +L+AF  G D H+ TA  ++         G  L +  G+          
Sbjct: 678  RIMAHLSEDKGLLEAFAEGRDIHTATAAEVF---------GTSLEKVSGD---------- 718

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                +RR AK +NF + YG +  GL+R   +   +A+  +D +++    V  + E  + +
Sbjct: 719  ----QRRSAKAINFGLIYGMSAWGLSRQLHIERNQAQTYIDRYFDRYPGVARYMERIRSQ 774

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +  D  V T+LGR    P I+S  R++R   ER AIN P+QG+AAD+   AM+++     
Sbjct: 775  AAEDGFVETVLGRRLYLPEIQSQNRNRRQGAERTAINAPMQGTAADIIKQAMIDVDAWLA 834

Query: 1060 LKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
              E    +++QVHDE++     E AE      +E + K   G   L+V L V+A+   NW
Sbjct: 835  EGEFDALMVMQVHDELVF----EVAEKQVDAFIEQVQKRMQGAAALKVPLIVEAESGANW 890

Query: 1120 YSA 1122
              A
Sbjct: 891  DEA 893


>gi|222153812|ref|YP_002562989.1| DNA polymerase I [Streptococcus uberis 0140J]
 gi|222114625|emb|CAR43640.1| DNA polymerase I [Streptococcus uberis 0140J]
          Length = 881

 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 186/347 (53%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCSLNIN-TETGRLS 838
            A D +  L  +  + + I ++  I  LQ + + G      ++G++H     + T+TGRLS
Sbjct: 562  AVDVLERLAPIAPVVAKILDYRQITKLQSTYLIGLQDYIMEDGKIHTRYVQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  +E+ R  IR+AF A   ++L+++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 622  SIDPNLQNIPIRMEQGRL-IRKAFTASSEDALLLSSDYSQIELRVLAHISGDQHLITAFN 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
               D H+ TAM ++     A++  +                 D  A++RR AK +NF I 
Sbjct: 681  EDADIHTSTAMRVF-----AIDKEE-----------------DVTANDRRNAKAVNFGIV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S ++AK+ ++ +++    +  + ++  +E++   +V TL  R R  
Sbjct: 719  YGISDFGLSNNLGISRQKAKEYINTYFDRYPGIKDYMDSIVREAKDKGYVETLFKRRREL 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K         K+LLQVHDE++
Sbjct: 779  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALEEGRFKTKMLLQVHDEIV 838

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P +  E  K +V E M        +L V L  D    ++WY AK
Sbjct: 839  LEVPKDELEKVKQLVKETMEHAV----DLSVPLRADENSGKSWYEAK 881


>gi|410668137|ref|YP_006920508.1| DNA polymerase I [Thermacetogenium phaeum DSM 12270]
 gi|409105884|gb|AFV12009.1| DNA polymerase I [Thermacetogenium phaeum DSM 12270]
          Length = 875

 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 123/328 (37%), Positives = 170/328 (51%), Gaps = 30/328 (9%)

Query: 795  LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKD 853
            L E      L S ++  LQG  V  + G+VH + N   T TGRLS+  PNLQN P     
Sbjct: 566  LLEYRQFAKLKSTYVDGLQGL-VDRETGKVHTTFNQTITATGRLSSTEPNLQNIPIKMGP 624

Query: 854  RYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
              KIR+AF+ + PG  ++ ADY Q+ELR+LAH++  + ++  F  G D H+RTA  ++  
Sbjct: 625  GRKIRRAFVPSEPGWLILAADYSQIELRVLAHMSRDERLIADFLNGEDIHTRTAATVF-- 682

Query: 913  IRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSV 972
                V   +V            P L       RR+AK +N+ I YG T  GLARD  VS 
Sbjct: 683  ---GVAPEEV-----------TPDL-------RRRAKGINYGIVYGITEYGLARDIGVSR 721

Query: 973  EEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIER 1032
            EEA   +  ++ +   V  + E     +R   +V TLL R R  P + S  R+ R+  ER
Sbjct: 722  EEAALYIANYFRQYPGVKRFIEETIAAARERGYVQTLLKRRRYLPDLLSSNRNVRSFGER 781

Query: 1033 AAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVV 1092
             AINTP+QGSAAD+   AML + +  R + L  +++LQVHDE++ E P E   V   +V 
Sbjct: 782  TAINTPIQGSAADIIKLAMLRVDREMRERGLRARMILQVHDELVFELPKEELGVLVPLVR 841

Query: 1093 ECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
              M K       L V L VD +   NWY
Sbjct: 842  SGMEKIM----ELAVPLRVDIEVGPNWY 865


>gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
 gi|340783454|ref|YP_004750061.1| DNA polymerase I [Acidithiobacillus caldus SM-1]
 gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
 gi|340557605|gb|AEK59359.1| DNA polymerase I [Acidithiobacillus caldus SM-1]
          Length = 894

 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 113/307 (36%), Positives = 161/307 (52%), Gaps = 28/307 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            +  + GRVH   +     TGRLS+  PNLQN P       +IRQAF+A PG+ LI ADY 
Sbjct: 612  IQERTGRVHTHYHQAVAATGRLSSSDPNLQNIPVRSDLGRRIRQAFVAEPGHLLISADYS 671

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+    +  AF  G D H  TA  ++     A+   QV  E          
Sbjct: 672  QIELRIMAHLSGDAGLRQAFARGLDIHRATAAEVF-----AIPLEQVTPE---------- 716

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                    +RR AK +NF + YG+TP GLA+   V   EAK  ++ ++     V  + E 
Sbjct: 717  --------QRRAAKAINFGLIYGQTPYGLAQQLGVGQGEAKAYMERYFERYPGVREYMEN 768

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             ++ +R   +V TL GR    P I+S   ++RN+ ERAAIN P+QG+AAD+   AM+ + 
Sbjct: 769  TRRLARQQGYVETLFGRRLYLPEIRSQNPARRNYAERAAINAPMQGTAADLIKLAMIAVD 828

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
                 +    ++LLQVHDE+ILE P ++ + A  ++ E M     G   L V L+V    
Sbjct: 829  AWLLAQTDHGRMLLQVHDELILEVPEKAVDAACQMLREKM----EGVAELAVPLTVGLGV 884

Query: 1116 AQNWYSA 1122
              NW +A
Sbjct: 885  GANWDAA 891


>gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405]
 gi|449111795|ref|ZP_21748364.1| DNA polymerase I [Treponema denticola ATCC 33521]
 gi|449113398|ref|ZP_21749903.1| DNA polymerase I [Treponema denticola ATCC 35404]
 gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405]
 gi|448957066|gb|EMB37819.1| DNA polymerase I [Treponema denticola ATCC 33521]
 gi|448959608|gb|EMB40327.1| DNA polymerase I [Treponema denticola ATCC 35404]
          Length = 936

 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 162/304 (53%), Gaps = 28/304 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ KNGR+H S +   T TGRLS+R PNLQN P    +  KIR+AF A  G  LI ADY 
Sbjct: 656  MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 715

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+EL ILAHL+  +++++AF  G D H++TA  ++     AV+                 
Sbjct: 716  QIELVILAHLSKDQNLVEAFNTGIDVHAKTASLIF-----AVD----------------- 753

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +KD     RR AK +NF + YG +   LA   ++  + A + +  ++     V  +   
Sbjct: 754  -IKDVSQDMRRIAKTINFGVMYGMSAFRLASSLRIPRKRADEFIKAYFATYSGVSGFMAN 812

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+    +V TL+GR R  PAI S  + ++   ER A+NTP+QG+AAD+   AMLE+ 
Sbjct: 813  VCQEAEQRGYVETLMGRRRYLPAINSKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVD 872

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
            K  + ++L   +LLQVHDE+I+E      E   ++V E M     G   L V L V  + 
Sbjct: 873  KALKKQKLDASILLQVHDELIIEAAESEREKVMSLVKEKM----EGVIKLSVPLRVSIES 928

Query: 1116 AQNW 1119
              +W
Sbjct: 929  GMSW 932


>gi|342162777|ref|YP_004767416.1| DNA polymerase I [Streptococcus pseudopneumoniae IS7493]
 gi|341932659|gb|AEL09556.1| DNA polymerase I [Streptococcus pseudopneumoniae IS7493]
          Length = 877

 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 120/348 (34%), Positives = 186/348 (53%), Gaps = 40/348 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P     +D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----EDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQVHDE++
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGAYQTKMLLQVHDEIV 834

Query: 1077 LEGP-SESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P SE AE+ K +V + M +       L V L  D      WY AK
Sbjct: 835  LEVPKSELAEM-KKLVKQTMEEAI----QLSVPLIADENEGATWYEAK 877


>gi|403668450|ref|ZP_10933720.1| DNA polymerase I [Kurthia sp. JC8E]
          Length = 874

 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 117/343 (34%), Positives = 178/343 (51%), Gaps = 33/343 (9%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARR 841
            Q   E  D I A  ++  + S   + +L +    V   N ++H       T TGRLS+  
Sbjct: 563  QPEHEVIDYILAFRQLGKLKSTYIDGLLKV----VHPDNHKIHTRYQQALTATGRLSSVD 618

Query: 842  PNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
            PNLQN P   ++  KIRQAFI +  G  L  ADY Q+ELR+LAH+AN K+++DAF+   D
Sbjct: 619  PNLQNIPVRLEEGRKIRQAFIPSQKGWKLFSADYSQIELRVLAHMANEKNLIDAFRHDLD 678

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H++TAM+++                 G +K  V        + RR+AK +NF I YG +
Sbjct: 679  IHTKTAMDVF-----------------GVEKESVT------PNMRRQAKAVNFGIVYGIS 715

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GL+++  ++ +EA   ++ ++     V  +      E++   +V TLL R R  P + 
Sbjct: 716  DYGLSQNLGITRKEAADFIERYFESFPGVKDYMTNIVAEAKKAGYVTTLLNRRRYLPDLN 775

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGP 1080
            S   + R+  ER A+NTP+QGSAAD+   AM+++++  + + L  K+LLQVHDE+I E P
Sbjct: 776  SRNFNVRSFAERTAMNTPIQGSAADIIKLAMIQMNRALKEQGLRSKMLLQVHDELIFEVP 835

Query: 1081 SESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E     + +V + M         L V L  DA     WY AK
Sbjct: 836  PEEVTTMQQLVPKVMESAL----ELSVPLKADAAIGDTWYEAK 874


>gi|423230541|ref|ZP_17216945.1| DNA polymerase I [Bacteroides dorei CL02T00C15]
 gi|423244250|ref|ZP_17225325.1| DNA polymerase I [Bacteroides dorei CL02T12C06]
 gi|392630685|gb|EIY24671.1| DNA polymerase I [Bacteroides dorei CL02T00C15]
 gi|392642431|gb|EIY36197.1| DNA polymerase I [Bacteroides dorei CL02T12C06]
          Length = 971

 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 175/351 (49%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     + +  + E   +  L+  +I  LPL    ++ + G++H S N   
Sbjct: 650  YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+   +M
Sbjct: 707  TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANM 766

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AFK G D H+ TA  +Y      +   +V  E                  +R KAK  
Sbjct: 767  IEAFKEGDDIHAATAAKVY-----KISIDKVTRE------------------QRSKAKTA 803

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    ++  + +     +R   ++ T+ G
Sbjct: 804  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFG 863

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM+ I +  + + +  K++LQV
Sbjct: 864  RKRYLPDINSRNSVVRGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQV 923

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+      E  E  + IV+E M   +    +++V L  D     NW  A
Sbjct: 924  HDELNFSVLPEEKEKVQKIVIEEMENAY----HMQVPLRADCGWGSNWLEA 970


>gi|254556429|ref|YP_003062846.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1]
 gi|380032357|ref|YP_004889348.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1]
 gi|254045356|gb|ACT62149.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1]
 gi|342241600|emb|CCC78834.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1]
          Length = 882

 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 180/334 (53%), Gaps = 29/334 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            ++ + +   I  + S +++ L  + +   + +VH   L   T+TGRLS+  PNLQN P  
Sbjct: 576  VANILQYRQISKIQSTYVVGLLDA-IHSADQKVHTRYLQTLTQTGRLSSVDPNLQNIPVR 634

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  KIRQAF+ +  G  +  +DY Q+ELR+LAH+ + ++M  AFKAG D H+ TAM +
Sbjct: 635  LEEGRKIRQAFVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAMRI 694

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            + H+ +A E             P +          RR+AK +NF I YG +  GL+++  
Sbjct: 695  F-HLNSAEEV-----------TPNI----------RRQAKAVNFGIVYGISDYGLSQNIG 732

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            ++ ++A+  +D ++ E   V  + +   + ++   +V T+  R R  P I S + +QR+ 
Sbjct: 733  ITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVETISHRRRYLPDINSKSFNQRSF 792

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER A+NTP+QGSAAD+   AM+++    +   L   +LLQVHDE+I E P E   V + 
Sbjct: 793  AERTAMNTPIQGSAADIIKIAMIKMQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVLEK 852

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            +V   M    +    L V L V++     WY AK
Sbjct: 853  LVPSVM----DSAVQLAVPLKVESHYGDTWYDAK 882


>gi|320334043|ref|YP_004170754.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
 gi|319755332|gb|ADV67089.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
          Length = 857

 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 114/333 (34%), Positives = 167/333 (50%), Gaps = 31/333 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL-NINTETGRLSARRPNLQNQPAL 850
            I  L E   +  L   ++ PL  + V+   GR+H +       TGRLS+  PNLQN P  
Sbjct: 555  IPLLLEYRELTKLKGTYLDPLP-NLVNPLTGRLHTTFAQTAVATGRLSSLNPNLQNIPIR 613

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
             +   +IR+ FIA  G  LI ADY Q+ELR+LAH+A+   M +AF  G D H RTA  + 
Sbjct: 614  SETGREIRKGFIADDGFCLISADYSQIELRLLAHIADDALMQEAFVGGADIHRRTAAQVL 673

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
              + + V   Q                       RR AK +NF + YG +   L+ D  +
Sbjct: 674  GVMEDLVTPNQ-----------------------RRAAKTVNFGVLYGMSAHRLSNDLGI 710

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
            S  EA + ++ ++     +  + +A     R   +V T+ GR R  P ++S  R+ R   
Sbjct: 711  SFAEASRFIERYFATYPRIREYIDATLAFGREHGYVETMYGRRRLVPELRSANRTMREAG 770

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAI 1090
            ER A N P+QG+AAD+   AM+E+ +  +L  LG +LLLQVHDE+++E PS+ A+   A+
Sbjct: 771  ERVAYNMPIQGTAADIIKIAMVELDE--QLSALGARLLLQVHDELLIEAPSDRADEVAAL 828

Query: 1091 VVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
                M     G   L+V L V+     NWY  K
Sbjct: 829  TRRVM----EGVVTLKVPLRVEIGTGPNWYDTK 857


>gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305]
 gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305]
          Length = 950

 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 125/357 (35%), Positives = 179/357 (50%), Gaps = 36/357 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   E+ A         L E   +  L S +   LPL    ++ K GRVH 
Sbjct: 626  KGAASTNEEVL--EELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLM---INAKTGRVHT 680

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 681  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQIELRIMAHL 740

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            AN + ML AF  G D H  TA  ++         G  L E  GE              +R
Sbjct: 741  ANDEGMLKAFAEGKDIHRSTASEIF---------GVPLDEVTGE--------------QR 777

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +S  +AK+ ++ ++N    VL +    K ++    +
Sbjct: 778  RNAKAINFGLIYGMSEFGLSNQLGISRADAKQYMEAYFNRYPNVLQFMTDIKAKAAEKGY 837

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
            V TLLGR    P IKS    +R   ER AIN P+QG+AAD+   AM+ I +  +  +   
Sbjct: 838  VETLLGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKIAMIGIDRIIQHSD-EI 896

Query: 1066 KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            K+++QVHDE++ E   +  E   A++   M K       L V L  +     NW  A
Sbjct: 897  KMIMQVHDELVFEVREDKVEHYSALIKAEMEKAI----QLSVPLIAEVGIGDNWDEA 949


>gi|168187834|ref|ZP_02622469.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
 gi|169294285|gb|EDS76418.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
          Length = 878

 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 172/338 (50%), Gaps = 39/338 (11%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPAL 850
            I  + E   I  L S ++  L+  NV   +G++H S N   T TGRLS+  PNLQN P  
Sbjct: 574  IEKIIEYRQITKLDSTYVEGLK--NVIDGDGKIHSSFNQTVTTTGRLSSTEPNLQNIPIK 631

Query: 851  EKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             +   +IR+ F+     S+I  ADY Q+ELRIL+H+A+ + ++DAFK   D H+ TA  +
Sbjct: 632  HEMGREIRKVFVPNNNESVIFSADYSQIELRILSHIADDEKLIDAFKHHKDIHTITASEV 691

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPV----PLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            +                    K P+    PL+       R  AK +NF I YG     L+
Sbjct: 692  F--------------------KVPIDEVTPLM-------RSNAKAVNFGIVYGIGAFSLS 724

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
            +D  VS +EAK+ +D +++    V  + +    ++ +D  V T+L R R  P I+S  + 
Sbjct: 725  KDINVSRKEAKEYIDTYFSRYPNVKKYIDEIISKAEVDGFVTTILNRKRYIPEIQSRNKI 784

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAE 1085
             R   ER A+NTP+QGSAAD+   AM+E+    + + L   L+LQVHDE+IL    +  E
Sbjct: 785  VRGFGERLAMNTPIQGSAADIIKLAMVEVYNELKNRNLKSTLILQVHDELILNVYKDELE 844

Query: 1086 VAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
              K +VV+ M         L V L  D    + WY AK
Sbjct: 845  EVKNMVVDKMENVM----KLLVPLEADVNAGETWYEAK 878


>gi|108759777|ref|YP_631312.1| DNA polymerase I [Myxococcus xanthus DK 1622]
 gi|108463657|gb|ABF88842.1| DNA polymerase I [Myxococcus xanthus DK 1622]
          Length = 908

 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 111/330 (33%), Positives = 170/330 (51%), Gaps = 30/330 (9%)

Query: 794  ALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEK 852
            A+ E  S+  L S ++  L    +   +GR+H + +   T TGRLS+  PNLQN P    
Sbjct: 607  AIIEYRSLSKLKSTYLDTL--PTLVAADGRIHTTYHQAATATGRLSSTDPNLQNIPVRTD 664

Query: 853  DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
               +IR+AF+A  G+ L+ ADY Q+ELR+LAH+AN   +++AF    D H+RTA  ++  
Sbjct: 665  LGREIRRAFVAAEGHQLVSADYSQVELRLLAHIANDPVLIEAFLHDEDIHTRTAAEVFGV 724

Query: 913  IRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSV 972
             +  V+  Q                       RR AKM+NF IAYG +P GL     ++ 
Sbjct: 725  AKEQVDREQ-----------------------RRVAKMVNFGIAYGLSPHGLGARLGIAQ 761

Query: 973  EEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIER 1032
            + A+  ++ ++     +  + E     +R   +V TL GR R    + S  R      ER
Sbjct: 762  DVARDIIERYFTRYAGIRRYLEETVDRARKTGYVETLYGRRRYMADLNSKNRGVAQAAER 821

Query: 1033 AAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVV 1092
            AAIN P+QG+AAD+   AML + +    ++L  ++LLQVHDE++ E P    E  KA+ V
Sbjct: 822  AAINMPIQGTAADLIKKAMLAVDEALTAQKLRTRMLLQVHDELLFEAPDAEVEQVKALAV 881

Query: 1093 ECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            + MS       +L+V L V+    ++W  A
Sbjct: 882  KAMS----SVADLKVPLKVEVGAGRSWADA 907


>gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
 gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
          Length = 971

 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 175/351 (49%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     + +  + E   +  L+  +I  LPL    ++ + G++H S N   
Sbjct: 650  YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+   +M
Sbjct: 707  TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANM 766

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AFK G D H+ TA  +Y      +   +V  E                  +R KAK  
Sbjct: 767  IEAFKEGDDIHAATAAKVY-----KISIDKVTRE------------------QRSKAKTA 803

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    ++  + +     +R   ++ T+ G
Sbjct: 804  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFG 863

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM+ I +  + + +  K++LQV
Sbjct: 864  RKRYLPDINSRNSVVRGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQV 923

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+      E  E  + IV+E M   +    +++V L  D     NW  A
Sbjct: 924  HDELNFSVLPEEKEKVQKIVIEEMENAY----HMQVPLRADCGWGSNWLEA 970


>gi|42519528|ref|NP_965458.1| DNA polymerase I [Lactobacillus johnsonii NCC 533]
 gi|41583817|gb|AAS09424.1| DNA polymerase I [Lactobacillus johnsonii NCC 533]
          Length = 886

 Score =  179 bits (454), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 166/305 (54%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLE 878
            +GR+H   L   T TGRLS+  PNLQN P   ++  +IR+AF+    +  I + DY Q+E
Sbjct: 608  DGRIHTRYLQTLTTTGRLSSVDPNLQNIPTKTEEGKQIRKAFVPSTKDGYIFSCDYSQVE 667

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH++  + M +AFK+G D H+ TAM ++ H+ +  E                PL+ 
Sbjct: 668  LRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIF-HLDSPDEV--------------TPLM- 711

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GL+++  +S ++AK  ++ ++ +  ++  + +   K
Sbjct: 712  ------RRHAKAVNFGIVYGISDYGLSKNLGISRKQAKTFIENYFEQYPQIKNYMDEAIK 765

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R + +  T++ R R  P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  
Sbjct: 766  KARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKL 825

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
                L  K++LQVHDE+I + P +  +  K IV E M         L V L  D+    N
Sbjct: 826  DELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAV----KLDVPLIADSNWGHN 881

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 882  WYDAK 886


>gi|308174603|ref|YP_003921308.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|384160438|ref|YP_005542511.1| DNA polymerase I [Bacillus amyloliquefaciens TA208]
 gi|384165377|ref|YP_005546756.1| DNA polymerase I [Bacillus amyloliquefaciens LL3]
 gi|384169519|ref|YP_005550897.1| DNA polymerase I [Bacillus amyloliquefaciens XH7]
 gi|307607467|emb|CBI43838.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|328554526|gb|AEB25018.1| DNA polymerase I [Bacillus amyloliquefaciens TA208]
 gi|328912932|gb|AEB64528.1| DNA polymerase I [Bacillus amyloliquefaciens LL3]
 gi|341828798|gb|AEK90049.1| DNA polymerase I [Bacillus amyloliquefaciens XH7]
          Length = 879

 Score =  179 bits (454), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 181/337 (53%), Gaps = 32/337 (9%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNG-RVHCSLN-INTETGRLSARRPNLQNQ 847
            D ++ + +   I  L S +I  L    V+ K+  +VH   N   T+TGRLS+  PNLQN 
Sbjct: 572  DIVAYILQYRQIGKLQSTYIEGLL--KVTRKDSHKVHTRFNQALTQTGRLSSTDPNLQNI 629

Query: 848  PALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
            P   ++  KIRQAF+    + LI  ADY Q+ELR+LAH++  +++++AF    D H++TA
Sbjct: 630  PIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTA 689

Query: 907  MNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLAR 966
            M+++ H+    E  Q +                     RR+AK +NF I YG +  GL++
Sbjct: 690  MDVF-HVSED-EVTQAM---------------------RRQAKAVNFGIVYGISDYGLSQ 726

Query: 967  DWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQ 1026
            +  ++ +EA   +D +      V  + E   +E++   +V TL+ R R  P + S   + 
Sbjct: 727  NLGITRKEAGAFIDRYLESFPGVKAYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNL 786

Query: 1027 RNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEV 1086
            R+  ER A+NTP+QGSAAD+   AM++++   + K L  +LLLQVHDE+I E P E  ++
Sbjct: 787  RSFAERTAMNTPIQGSAADIIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIKI 846

Query: 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             + +V E M        +L V L  D     +WY AK
Sbjct: 847  LEKLVPEVMEHAL----DLDVPLKADYASGPSWYDAK 879


>gi|449115967|ref|ZP_21752427.1| DNA polymerase I [Treponema denticola H-22]
 gi|448955453|gb|EMB36220.1| DNA polymerase I [Treponema denticola H-22]
          Length = 944

 Score =  179 bits (454), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 162/304 (53%), Gaps = 28/304 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ KNGR+H S +   T TGRLS+R PNLQN P    +  KIR+AF A  G  LI ADY 
Sbjct: 664  MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 723

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+EL ILAHL+  +++++AF  G D H++TA  ++     AV+                 
Sbjct: 724  QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF-----AVD----------------- 761

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +KD     RR AK +NF + YG +   LA   ++  + A + +  ++     V  +   
Sbjct: 762  -IKDVSQDMRRIAKTINFGVMYGMSAFRLASSLRIPRKRADEFIKAYFATYSGVSGFMAQ 820

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+    +V TL+GR R  PAI S  + ++   ER A+NTP+QG+AAD+   AMLE+ 
Sbjct: 821  VCQEAEQRGYVETLMGRRRYLPAINSKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVD 880

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
            K  + ++L   +LLQVHDE+I+E      E   ++V E M     G   L V L V  + 
Sbjct: 881  KALKKQKLDASILLQVHDELIIEAAESEREKVMSLVKEKM----EGVIKLSVPLRVSIES 936

Query: 1116 AQNW 1119
              +W
Sbjct: 937  GMSW 940


>gi|440758546|ref|ZP_20937710.1| DNA polymerase I [Pantoea agglomerans 299R]
 gi|436427720|gb|ELP25393.1| DNA polymerase I [Pantoea agglomerans 299R]
          Length = 928

 Score =  179 bits (454), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 165/312 (52%), Gaps = 32/312 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + +SG   RVH S +   T TGRLS+  PNLQN P    +  +IRQAF+A  G+ 
Sbjct: 643  LPLMINPISG---RVHTSYHQAVTATGRLSSADPNLQNIPVRNDEGRRIRQAFVAAKGHR 699

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +LDAF  G D H  TA  ++         G  L +  G
Sbjct: 700  IVAADYSQIELRIMAHLSQDKGLLDAFAQGDDIHRATASEVF---------GVALDKVSG 750

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 751  E--------------QRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 796

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++ +  + +V TL GR    P IKS    +R   ERAAIN P+QG+AAD+  
Sbjct: 797  VLRYMENTRQLAASNGYVETLEGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIK 856

Query: 1049 CAMLEISK-NARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRV 1107
             AM+ + +   +  +   ++++QVHDE++ E  +E+ E A   +   M     G   L V
Sbjct: 857  RAMIAVDEWLEQQNDNAVRMIMQVHDELVFEVKAEAVEEASQKIRALM----EGSVQLDV 912

Query: 1108 DLSVDAKCAQNW 1119
             L V+     NW
Sbjct: 913  PLLVEVGVGNNW 924


>gi|326391770|ref|ZP_08213290.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
 gi|325992186|gb|EGD50658.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
          Length = 872

 Score =  179 bits (454), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 116/354 (32%), Positives = 188/354 (53%), Gaps = 41/354 (11%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI---LPLQGSNVSGKNGRVHCSL-NI 830
            ++T+ E  E      D +S + E   +  L S +I   LPL       +N RVH +   +
Sbjct: 551  YSTDSEVLEQLVPYNDVVSDIIEYRQLTKLKSTYIDGFLPLMD-----ENNRVHSNFKQM 605

Query: 831  NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCK 889
             T TGR+S+  PNLQN P  E+   +IR+AFI    +  IV ADY Q+ELR+LAH++  +
Sbjct: 606  VTATGRISSTEPNLQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDE 665

Query: 890  SMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAK 949
             ++++F    D H RTA  ++                       VP+ K      RR AK
Sbjct: 666  KLIESFMNNEDIHLRTAAEVFK----------------------VPMEK-VTPEMRRAAK 702

Query: 950  MLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTL 1009
             +NF I YG +  GL+RD K+S +EAK+ ++ ++   + V  + E   + ++ + +V T+
Sbjct: 703  AVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTI 762

Query: 1010 LGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLL 1069
            + R R  P I S   +QR+  ER A+N P+QGSAAD+   AM+++ ++ +  +L  +L+L
Sbjct: 763  MNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLIL 822

Query: 1070 QVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            QVHDE++++   +  ++ K I+ E M         L+V L V+     NW+ AK
Sbjct: 823  QVHDELVVDTYKDEVDIVKKILKENMENVI----KLKVPLVVEIGIGPNWFLAK 872


>gi|451947544|ref|YP_007468139.1| DNA polymerase I [Desulfocapsa sulfexigens DSM 10523]
 gi|451906892|gb|AGF78486.1| DNA polymerase I [Desulfocapsa sulfexigens DSM 10523]
          Length = 890

 Score =  179 bits (454), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 161/300 (53%), Gaps = 26/300 (8%)

Query: 821  NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            +GRVH S N   T TGRLS+  PN+QN P   ++  +IR AF+   G   + ADY Q++L
Sbjct: 615  SGRVHTSFNQTVTATGRLSSSNPNMQNIPIRTEEGNRIRHAFVPAKGLVFLSADYSQIDL 674

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAH +   ++L AF+ G D H+RTA  ++     AV                 PLL  
Sbjct: 675  RVLAHYSQDAALLHAFRNGEDIHARTAAELF-----AVS----------------PLL-- 711

Query: 940  AFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               SE RR AK +NF I YG +  GL+    +S  EA + ++ +++    V T+ E   +
Sbjct: 712  -LTSEMRRVAKSINFGIVYGMSSFGLSNQLNISRREASRFIEKYFHLYGGVKTFMEKVVE 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++RID +V TLL R R  P I    ++QR   ER AINTP+QGSAAD+   AM+++    
Sbjct: 771  QARIDEYVTTLLNRRRMLPEINVKNKTQREFAERTAINTPIQGSAADIIKLAMVKVVPAL 830

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            + + L  +LLLQ+HDE++ E P    +  + +V + M         L V+  +    A++
Sbjct: 831  QRENLSARLLLQIHDELVFELPESELKETQEVVRDSMEGALQLDVPLIVNFEIGKSLAKS 890


>gi|345891706|ref|ZP_08842544.1| hypothetical protein HMPREF1022_01204 [Desulfovibrio sp. 6_1_46AFAA]
 gi|345047998|gb|EGW51846.1| hypothetical protein HMPREF1022_01204 [Desulfovibrio sp. 6_1_46AFAA]
          Length = 922

 Score =  179 bits (454), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 182/355 (51%), Gaps = 28/355 (7%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            KG  AS ++    +   R A   + ++ +   ++ + S ++ PL    +    GR+H + 
Sbjct: 594  KGGQASTSQQTLEKLAGRHAV--VDSILQFRKLEKMRSTYLDPL--PRLVDGQGRIHTTF 649

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGRLS+  PNLQN P       ++R  FIA PG +L+ ADY Q+ELR+LAH++ 
Sbjct: 650  NQKATATGRLSSSNPNLQNIPVRGPLGKRMRACFIAGPGRTLVSADYSQVELRVLAHMSQ 709

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
              ++LDAF+ G D H+RTA  +Y      ++ G+V                     +RR 
Sbjct: 710  DAALLDAFRQGEDIHARTAALIY-----DLQAGEV------------------SPDQRRN 746

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF + YG     L ++ K+S  EAK+ +  ++     +  + E  +  ++   +V 
Sbjct: 747  AKTINFGLIYGMGAQKLGQELKISTAEAKEFITRYFERLTGLKAFYENVEATAKRQGYVT 806

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            TL GR R  P I S          R AINT +QGSAAD+   AML ++ +A L+ +  +L
Sbjct: 807  TLGGRRRLLPDILSANGQAFALARRQAINTVIQGSAADIIKLAMLAVAHDAELRRMDARL 866

Query: 1068 LLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            LLQVHDE++LE P  +AE A A V   MS    G   L V L VD     +W +A
Sbjct: 867  LLQVHDELLLETPEATAEAAGARVAALMSSVAPGGETLSVPLVVDWGVGHDWGTA 921


>gi|449131373|ref|ZP_21767589.1| DNA polymerase I [Treponema denticola SP37]
 gi|448940206|gb|EMB21117.1| DNA polymerase I [Treponema denticola SP37]
          Length = 944

 Score =  179 bits (454), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 162/304 (53%), Gaps = 28/304 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ KNGR+H S +   T TGRLS+R PNLQN P    +  KIR+AF A  G  LI ADY 
Sbjct: 664  MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 723

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+EL ILAHL+  +++++AF  G D H++TA  ++     AV+                 
Sbjct: 724  QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF-----AVD----------------- 761

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +KD     RR AK +NF + YG +   LA   ++  + A + +  ++     V  +   
Sbjct: 762  -IKDVSQDMRRIAKTINFGVMYGMSAFRLASSLRIPRKRADEFIKAYFATYSGVSGFMAQ 820

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+    +V TL+GR R  PAI S  + ++   ER A+NTP+QG+AAD+   AMLE+ 
Sbjct: 821  VCQEAEQRGYVETLMGRRRYLPAINSKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVD 880

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
            K  + ++L   +LLQVHDE+I+E      E   ++V E M     G   L V L V  + 
Sbjct: 881  KALKKQKLDASILLQVHDELIIEAAESEREKVMSLVKEKM----EGVIKLSVPLRVSIES 936

Query: 1116 AQNW 1119
              +W
Sbjct: 937  GMSW 940


>gi|422342121|ref|ZP_16423061.1| DNA polymerase I [Treponema denticola F0402]
 gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402]
          Length = 944

 Score =  179 bits (454), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 162/304 (53%), Gaps = 28/304 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ KNGR+H S +   T TGRLS+R PNLQN P    +  KIR+AF A  G  LI ADY 
Sbjct: 664  MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 723

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+EL ILAHL+  +++++AF  G D H++TA  ++     AV+                 
Sbjct: 724  QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF-----AVD----------------- 761

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +KD     RR AK +NF + YG +   LA   ++  + A + +  ++     V  +   
Sbjct: 762  -IKDVSQDMRRIAKTINFGVMYGMSAFRLASSLRIPRKRADEFIKAYFATYSGVSGFMAQ 820

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+    +V TL+GR R  PAI S  + ++   ER A+NTP+QG+AAD+   AMLE+ 
Sbjct: 821  VCQEAEQRGYVETLMGRRRYLPAINSKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVD 880

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
            K  + ++L   +LLQVHDE+I+E      E   ++V E M     G   L V L V  + 
Sbjct: 881  KALKKQKLDASILLQVHDELIIEAAESEREKVMSLVKEKM----EGVIKLSVPLRVSIES 936

Query: 1116 AQNW 1119
              +W
Sbjct: 937  GMSW 940


>gi|315612199|ref|ZP_07887114.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296]
 gi|315315760|gb|EFU63797.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296]
          Length = 889

 Score =  179 bits (454), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 184/349 (52%), Gaps = 42/349 (12%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 570  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYVQDLTQTGRLS 629

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 630  SVDPNLQNIPVRLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 688

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P     +D   ++RR AK +NF + 
Sbjct: 689  EGADIHTSTAMRVF-----------------GIERP-----EDVTPNDRRNAKAVNFGVV 726

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 727  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 786

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDE 1074
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K   L E G+  K+LLQVHDE
Sbjct: 787  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDK--ALVEGGYQTKMLLQVHDE 844

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            ++LE P       KA+V + M +       L V L  D      WY AK
Sbjct: 845  IVLEVPKSELAAVKALVKQTMEEAI----QLSVPLIADENEGATWYEAK 889


>gi|399543583|ref|YP_006556891.1| DNA polymerase I [Marinobacter sp. BSs20148]
 gi|399158915|gb|AFP29478.1| DNA polymerase I [Marinobacter sp. BSs20148]
          Length = 936

 Score =  179 bits (454), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 161/309 (52%), Gaps = 31/309 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            +  + GRVH S +   T TGRLS+  PNLQN P   +   +IRQAF+A  G  L+ ADY 
Sbjct: 655  IHHRTGRVHTSYHQAVTATGRLSSSEPNLQNIPIRSEQGRRIRQAFVAEKGYKLLAADYS 714

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +L AF  G D H  TA  ++           V LE    D     
Sbjct: 715  QIELRIMAHLSEDKGLLTAFAKGEDIHKATAAEVF----------GVTLEEVNSD----- 759

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                    +RR AK +NF + YG +  GLAR   V  + A++ +D ++     VLT+ + 
Sbjct: 760  --------QRRSAKAINFGLIYGMSAFGLARQLDVERKVAQQYIDRYFERYPGVLTYMDK 811

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +K++  D +V TL GR    P I +  +  +   ER AIN P+QG+AAD+   AM+E+ 
Sbjct: 812  IRKQAHEDGYVETLFGRRLYLPEINTRNKQLQQAAERTAINAPMQGTAADIIKLAMIEVE 871

Query: 1056 KNARLKEL--GWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            +   L E     ++ +QVHDE+I+E   E+ E  +    E + K  +G   L V L V+A
Sbjct: 872  R-WLLAEYPDSARMTMQVHDELIIEVKEEAVEAVR----EGLIKRMSGAAELAVPLLVEA 926

Query: 1114 KCAQNWYSA 1122
                NW  A
Sbjct: 927  GVGDNWDQA 935


>gi|70726235|ref|YP_253149.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435]
 gi|68446959|dbj|BAE04543.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435]
          Length = 876

 Score =  179 bits (454), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 118/334 (35%), Positives = 168/334 (50%), Gaps = 31/334 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPAL 850
            I  + E   +  L S ++  LQ   V  K+ R+H   N    +TGRLS+  PNLQN P  
Sbjct: 572  IDYILEYRQLSKLQSTYVEGLQ--KVISKDNRIHTRFNQTLAQTGRLSSVDPNLQNIPVR 629

Query: 851  EKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  KIR+AF     +S+I+ ADY Q+ELR+LAH+   +SM +AF    D H+ TAM +
Sbjct: 630  LEEGRKIRKAFKPTSNDSVILSADYSQIELRVLAHITQDESMKEAFINEKDVHTATAMKV 689

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +      VE  +V                   A  RR+AK +NF I YG +  GL++   
Sbjct: 690  FD-----VEANEV------------------NALMRRQAKAVNFGIVYGISDYGLSQSLN 726

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            ++ ++AK  +D +      V  +     K+++ D +V TLL R R  P I S   + R  
Sbjct: 727  ITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKADGYVETLLHRRRYIPDINSRNFNLRGF 786

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER A+NTP+QGSAAD+   AM+E  +  +      +LLLQVHDE+I E P+   E    
Sbjct: 787  AERTAMNTPIQGSAADIIKLAMVEFDRQIKQTSYHAQLLLQVHDELIFEVPANEVEDFSL 846

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             V E M         L V L VD+     WY AK
Sbjct: 847  FVEEIMEHAL----QLDVPLKVDSNYGSTWYDAK 876


>gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
 gi|423240816|ref|ZP_17221930.1| DNA polymerase I [Bacteroides dorei CL03T12C01]
 gi|212664838|gb|EEB25410.1| DNA-directed DNA polymerase [Bacteroides dorei DSM 17855]
 gi|392643778|gb|EIY37527.1| DNA polymerase I [Bacteroides dorei CL03T12C01]
          Length = 971

 Score =  179 bits (454), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 175/351 (49%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     + +  + E   +  L+  +I  LPL    ++ + G++H S N   
Sbjct: 650  YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+   +M
Sbjct: 707  TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANM 766

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AFK G D H+ TA  +Y      +   +V  E                  +R KAK  
Sbjct: 767  IEAFKEGDDIHAATAAKVY-----KISIDKVTRE------------------QRSKAKTA 803

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    ++  + +     +R   ++ T+ G
Sbjct: 804  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFG 863

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM+ I +  + + +  K++LQV
Sbjct: 864  RKRYLPDINSRNSVVRGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQV 923

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+      E  E  + IV+E M   +    +++V L  D     NW  A
Sbjct: 924  HDELNFSVLPEEKEKVQKIVIEEMENAY----HMQVPLRADCGWGSNWLEA 970


>gi|15674390|ref|NP_268564.1| DNA polymerase I [Streptococcus pyogenes SF370]
 gi|13621480|gb|AAK33285.1| DNA-directed DNA polymerase I [Streptococcus pyogenes M1 GAS]
          Length = 880

 Score =  179 bits (454), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + +   I  L S +++ LQ   ++  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VAKILDYRQITKLQSTYVIGLQDYILA--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AF  G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++   R A                      D  A++RR AK +NF I YG +  GL+ + 
Sbjct: 692  VFGIDRAA----------------------DVTANDRRNAKAVNFGIVYGISDFGLSNNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             ++ ++AK  +D ++     +  + E   +E++   +V TL  R R  P I S   + R+
Sbjct: 730  GITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRS 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + K  +      K+LLQVHDE++LE P++     K
Sbjct: 790  FAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIK 849

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V + M        +L V L VD     +WY AK
Sbjct: 850  KLVKDTMEAAV----DLAVPLCVDESTGHSWYEAK 880


>gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila]
          Length = 893

 Score =  179 bits (454), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 119/334 (35%), Positives = 174/334 (52%), Gaps = 34/334 (10%)

Query: 790  DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQN 846
            + I  + E   I  L S +I  LP     V+ K GR+H S N   T TGRLS+  PNLQN
Sbjct: 589  EIIPLILEYRKIQKLKSTYIDALP---KMVNPKTGRIHASFNQTGTATGRLSSSDPNLQN 645

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
             P   ++  +IR+A +    N  IV ADY Q+ELRILAHL+  +++L AF+ G D H+ T
Sbjct: 646  LPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLKAFEEGIDVHTLT 705

Query: 906  AMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            A  ++      V+  +V  E                   RR  KM+NFSI YG TP GL+
Sbjct: 706  ASRIF-----NVKPEEVTEEM------------------RRAGKMVNFSIIYGVTPYGLS 742

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
                V V+EA+K +  ++    +V  + +    E++   +V TL GR R  P + +  R+
Sbjct: 743  VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRRRDIPQLMARDRN 802

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAE 1085
             +   ER AINTP+QG+AAD+   AM+EI +  +  ++  K+++QVHDE++ E P E   
Sbjct: 803  TQAEGERIAINTPIQGTAADIIKLAMIEIDRELKESKMKTKMIIQVHDELVFEVPDEE-- 860

Query: 1086 VAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
              K  +VE +         L V L VD    + W
Sbjct: 861  --KDALVELVKDRMTNVVKLSVPLEVDVTIGKTW 892



 Score = 49.7 bits (117), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 105/259 (40%), Gaps = 59/259 (22%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           +++L +     EDP  K V  N  FD  VL   G++    H DTM  A L + +   E  
Sbjct: 364 KEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPHFDTMIAAYLIEPN---EKK 420

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
           ++L+ L    K +     +YQ+ MS  +   GF    S  D+                  
Sbjct: 421 FNLDDLA--LKFLGYKMTSYQELMSFSSPLFGF----SFADV------------------ 456

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
            PVE+          +YS  D+  T +LYK+L  KL E   +            + + + 
Sbjct: 457 -PVEKAA--------NYSCEDADITYRLYKTLSLKLHEADLE------------NVFYKI 495

Query: 602 WQPFGEILVKMETEGMLVDREYLSEI-EKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
             P   +L +ME  G+ VD E+L ++ E+  +  +E A   +R             N+ S
Sbjct: 496 EMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRIAGEP-------FNINS 548

Query: 661 DTQLRQLLF---GGKPNSK 676
             Q+ ++LF   G KP  K
Sbjct: 549 PKQVSRILFEKLGIKPRGK 567


>gi|299688943|pdb|3HPO|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus
            Stearothermophilus Y714s Mutant Bound To G:t Mismatch
          Length = 580

 Score =  179 bits (454), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 170/305 (55%), Gaps = 33/305 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 305  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 364

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+A   ++++AF+   D H++TAM+++          QV      ED        + 
Sbjct: 365  VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 401

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I  G +  GLA++  +S +EA + ++ ++     V  + E   +E+
Sbjct: 402  TPNMRRQAKAVNFGIVSGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 461

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++  NARL
Sbjct: 462  KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 519

Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            KE  L   LLLQVHDE+ILE P E  E    +V E M +       LRV L VD      
Sbjct: 520  KEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 575

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 576  WYDAK 580


>gi|295693393|ref|YP_003602003.1| DNA polymerase i [Lactobacillus crispatus ST1]
 gi|295031499|emb|CBL50978.1| DNA polymerase I [Lactobacillus crispatus ST1]
          Length = 887

 Score =  179 bits (454), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 175/334 (52%), Gaps = 30/334 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            +S + +   I  + S ++  L   +V   +GRVH   L   T TGRLS+  PNLQN P  
Sbjct: 582  VSEILDYRQIAKIQSTYVKGL--LDVIQPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTR 639

Query: 851  EKDRYKIRQAFIAV-PGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AF+   P   +   DY Q+ELR+LAH++  ++M +AFK G D HS TAM +
Sbjct: 640  TEEGKQIRKAFVPTEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMRI 699

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            + H+ +  E                PL+       RR AK +NF I YG +  GL+++  
Sbjct: 700  F-HLDSPDEV--------------TPLM-------RRHAKAVNFGIVYGISDYGLSKNLG 737

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            +S + A++ +D ++ +  ++  + +   + +R   +  T++ R R  P I +   + R+ 
Sbjct: 738  ISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSF 797

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER AIN+P+QGSAAD+   AM+ + K      L  K+++QVHDE+I + P +  E  K 
Sbjct: 798  AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKK 857

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            IV E M         L V L  D+    NWY AK
Sbjct: 858  IVPEVMQSAV----KLDVPLIADSGWGHNWYDAK 887


>gi|157693309|ref|YP_001487771.1| DNA polymerase I [Bacillus pumilus SAFR-032]
 gi|157682067|gb|ABV63211.1| DNA-directed DNA polymerase I [Bacillus pumilus SAFR-032]
          Length = 879

 Score =  179 bits (454), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 169/303 (55%), Gaps = 29/303 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+ +  G  +  ADY Q+ELR
Sbjct: 604  KVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEGWLMFAADYSQIELR 663

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH++  +++++AF    D H++TAM+++ H+                        ++ 
Sbjct: 664  VLAHISQDENLIEAFTRDMDIHTKTAMDVF-HVSE----------------------EEV 700

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             ++ RR+AK +NF I YG +  GL+++  ++ +EA   ++ +    + V T+ E   +E+
Sbjct: 701  TSAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAAAFIERYLTSFKGVKTYMEEIVQEA 760

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + ++  ER A+NTP+QGSAAD+   AM+++++  + 
Sbjct: 761  KQKGYVTTLLKRRRYIPDITSRNFNIKSFAERTAMNTPIQGSAADIIKKAMIDMARRLKE 820

Query: 1061 KELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
            ++L   LLLQVHDE+I E P E   + + IV E M         L V L VD     +WY
Sbjct: 821  EKLQTNLLLQVHDELIFEAPKEEIAILEKIVPEVMENAL----QLDVPLKVDFASGPSWY 876

Query: 1121 SAK 1123
             AK
Sbjct: 877  DAK 879


>gi|342215259|ref|ZP_08707910.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 780 str.
            F0422]
 gi|341588698|gb|EGS32081.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 780 str.
            F0422]
          Length = 847

 Score =  179 bits (454), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 176/340 (51%), Gaps = 30/340 (8%)

Query: 786  REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNL 844
            R   + +  +    S+  L+S ++   +G  V+    R+H S N + T TGRLS+  PNL
Sbjct: 536  RNDHEIVEQILAYRSVVKLVSTYLEGFEGL-VNPHTNRIHTSFNQMVTATGRLSSSDPNL 594

Query: 845  QNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHS 903
            QN P   +   +IR  F    G  + V ADY Q+ELRILAHL+   +++ AF+ G D H 
Sbjct: 595  QNIPVRSEKGREIRALFKPHDGYDMFVSADYSQIELRILAHLSEDPALIQAFQNGEDIHR 654

Query: 904  RTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVG 963
             TA  +          G+ L     E+  P+         ER  AK +NF I YG +  G
Sbjct: 655  FTAAEVL---------GKSL-----EEVTPL---------ERSHAKAINFGIIYGISDFG 691

Query: 964  LARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLT 1023
            L+RD  ++  EAK+ ++L+++   ++  + +   +E+     V T+ GR R  P I S  
Sbjct: 692  LSRDLGITRAEAKEYIELYFSRYPQIKGYMDRMVQEAHETGSVRTMFGRVRPLPDINSRN 751

Query: 1024 RSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSES 1083
             ++R+  ER A+NTP+QG+AAD+   AM ++ +    + L  ++LLQVHDE++LE     
Sbjct: 752  FNRRSFAERTAMNTPIQGTAADIIKLAMNQVEQALEEQGLQSRILLQVHDELVLEVVESE 811

Query: 1084 AEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             E  + ++  CM +       LRV L VD   AQNW   K
Sbjct: 812  QEQVETLLRNCMEQVV----TLRVPLQVDVHSAQNWADVK 847


>gi|449102534|ref|ZP_21739282.1| DNA polymerase I [Treponema denticola AL-2]
 gi|448966123|gb|EMB46781.1| DNA polymerase I [Treponema denticola AL-2]
          Length = 943

 Score =  179 bits (454), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 162/304 (53%), Gaps = 28/304 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ KNGR+H S +   T TGRLS+R PNLQN P    +  KIR+AF A  G  LI ADY 
Sbjct: 663  MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 722

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+EL ILAHL+  +++++AF  G D H++TA  ++     AV+                 
Sbjct: 723  QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF-----AVD----------------- 760

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +KD     RR AK +NF + YG +   LA   ++  + A + +  ++     V  +   
Sbjct: 761  -IKDVSQDMRRIAKTINFGVMYGMSAFRLASSLRIPRKRADEFIKAYFATYSGVSGFMAQ 819

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+    +V TL+GR R  PAI S  + ++   ER A+NTP+QG+AAD+   AMLE+ 
Sbjct: 820  VCQEAEQRGYVETLMGRRRYLPAINSKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVD 879

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
            K  + ++L   +LLQVHDE+I+E      E   ++V E M     G   L V L V  + 
Sbjct: 880  KALKKQKLDASILLQVHDELIIEAAESEREKVMSLVKEKM----EGVIKLSVPLRVSIES 935

Query: 1116 AQNW 1119
              +W
Sbjct: 936  GMSW 939


>gi|343520480|ref|ZP_08757449.1| DNA-directed DNA polymerase [Parvimonas sp. oral taxon 393 str.
            F0440]
 gi|343397438|gb|EGV09972.1| DNA-directed DNA polymerase [Parvimonas sp. oral taxon 393 str.
            F0440]
          Length = 837

 Score =  179 bits (454), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 163/304 (53%), Gaps = 28/304 (9%)

Query: 821  NGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            +GRV  S   + T TGRLS+  PNLQN P   ++   IR+ F+A      I ADY Q+EL
Sbjct: 561  DGRVRTSFKQMITATGRLSSVDPNLQNIPIRSEEGKNIRKVFVADKNKVFIDADYSQIEL 620

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAHL+    M+++FK   D H +TA  ++                      P+  + D
Sbjct: 621  RVLAHLSKDSVMIESFKNDLDIHYKTASEVFG--------------------VPIDEVTD 660

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
               ++RR AK +NF I YG +  GL++D  ++  EA++ ++ + N    +  + E     
Sbjct: 661  ---NQRRSAKAVNFGIVYGISDYGLSKDLNITRNEAREYIEGYLNTYPRIKNYMEEIVDR 717

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            ++ D  V T+L R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++ +  +
Sbjct: 718  AKKDGFVTTILDRKRYIPEINSKNFNIRSFGERIALNTPIQGSAADIIKLAMIKVYERLK 777

Query: 1060 LKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
            L+++  KL+LQ+HDE+I+E      E+ K I+ + M   +     L + L VD    +NW
Sbjct: 778  LEKVNAKLILQIHDELIIECEENEKEIVKKILKDSMENVY----KLDLPLKVDVCEGRNW 833

Query: 1120 YSAK 1123
            Y +K
Sbjct: 834  YESK 837


>gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
 gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
          Length = 971

 Score =  179 bits (454), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 175/351 (49%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     + +  + E   +  L+  +I  LPL    ++ + G++H S N   
Sbjct: 650  YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+   +M
Sbjct: 707  TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANM 766

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AFK G D H+ TA  +Y      +   +V  E                  +R KAK  
Sbjct: 767  IEAFKEGDDIHAATAAKVY-----KISIDKVTRE------------------QRSKAKTA 803

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    ++  + +     +R   ++ T+ G
Sbjct: 804  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFG 863

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM+ I +  + + +  K++LQV
Sbjct: 864  RKRYLPDINSRNSVVRGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQV 923

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+      E  E  + IV+E M   +    +++V L  D     NW  A
Sbjct: 924  HDELNFSVLPEEKEKVQKIVIEEMENAY----HMQVPLRADCGWGSNWLEA 970


>gi|345514278|ref|ZP_08793791.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4]
 gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4]
          Length = 971

 Score =  179 bits (454), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 175/351 (49%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     + +  + E   +  L+  +I  LPL    ++ + G++H S N   
Sbjct: 650  YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+   +M
Sbjct: 707  TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANM 766

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AFK G D H+ TA  +Y      +   +V  E                  +R KAK  
Sbjct: 767  IEAFKEGDDIHAATAAKVY-----KISIDKVTRE------------------QRSKAKTA 803

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    ++  + +     +R   ++ T+ G
Sbjct: 804  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFG 863

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM+ I +  + + +  K++LQV
Sbjct: 864  RKRYLPDINSRNSVVRGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQV 923

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+      E  E  + IV+E M   +    +++V L  D     NW  A
Sbjct: 924  HDELNFSVLPEEKEKVQKIVIEEMENAY----HMQVPLRADCGWGSNWLEA 970


>gi|449107484|ref|ZP_21744138.1| DNA polymerase I [Treponema denticola ASLM]
 gi|451969176|ref|ZP_21922405.1| DNA polymerase I [Treponema denticola US-Trep]
 gi|448961684|gb|EMB42379.1| DNA polymerase I [Treponema denticola ASLM]
 gi|451702044|gb|EMD56478.1| DNA polymerase I [Treponema denticola US-Trep]
          Length = 944

 Score =  179 bits (454), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 162/304 (53%), Gaps = 28/304 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ KNGR+H S +   T TGRLS+R PNLQN P    +  KIR+AF A  G  LI ADY 
Sbjct: 664  MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 723

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+EL ILAHL+  +++++AF  G D H++TA  ++     AV+                 
Sbjct: 724  QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF-----AVD----------------- 761

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +KD     RR AK +NF + YG +   LA   ++  + A + +  ++     V  +   
Sbjct: 762  -IKDVSQDMRRIAKTINFGVMYGMSAFRLASSLRIPRKRADEFIKAYFATYSGVSGFMAQ 820

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+    +V TL+GR R  PAI S  + ++   ER A+NTP+QG+AAD+   AMLE+ 
Sbjct: 821  VCQEAEQRGYVETLMGRRRYLPAINSKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVD 880

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
            K  + ++L   +LLQVHDE+I+E      E   ++V E M     G   L V L V  + 
Sbjct: 881  KALKKQKLDASILLQVHDELIIEAAESEREKVMSLVKEKM----EGVIKLSVPLRVSIES 936

Query: 1116 AQNW 1119
              +W
Sbjct: 937  GMSW 940


>gi|303327432|ref|ZP_07357873.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
 gi|302862372|gb|EFL85305.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
          Length = 922

 Score =  179 bits (454), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 182/355 (51%), Gaps = 28/355 (7%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            KG  AS ++    +   R A   + ++ +   ++ + S ++ PL    +    GR+H + 
Sbjct: 594  KGGQASTSQQTLEKLAGRHAV--VDSILQFRKLEKMRSTYLDPL--PRLVDGQGRIHTTF 649

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGRLS+  PNLQN P       ++R  FIA PG +L+ ADY Q+ELR+LAH++ 
Sbjct: 650  NQKATATGRLSSSNPNLQNIPVRGPLGKRMRACFIAGPGRTLVSADYSQVELRVLAHMSQ 709

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
              ++LDAF+ G D H+RTA  +Y      ++ G+V                     +RR 
Sbjct: 710  DAALLDAFRQGEDIHARTAALIY-----DLQAGEV------------------SPDQRRN 746

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF + YG     L ++ K+S  EAK+ +  ++     +  + E  +  ++   +V 
Sbjct: 747  AKTINFGLIYGMGAQKLGQELKISTAEAKEFITRYFERLTGLKAFYENVEATAKRQGYVT 806

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            TL GR R  P I S          R AINT +QGSAAD+   AML ++ +A L+ +  +L
Sbjct: 807  TLGGRRRLLPDILSANGQAFALARRQAINTVIQGSAADIIKLAMLAVAHDAELRRMDARL 866

Query: 1068 LLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            LLQVHDE++LE P  +AE A A V   MS    G   L V L VD     +W +A
Sbjct: 867  LLQVHDELLLETPEATAEAAGARVAALMSSVAPGGETLSVPLVVDWGVGHDWGTA 921


>gi|268608093|ref|ZP_06141821.1| DNA polymerase I [Ruminococcus flavefaciens FD-1]
          Length = 845

 Score =  179 bits (454), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 162/304 (53%), Gaps = 28/304 (9%)

Query: 821  NGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            +GR+H       T TGR+S+  PN+QN P   +   ++R+ F+A  G  L+ ADY Q+EL
Sbjct: 568  DGRIHTWFRQTETRTGRISSTEPNMQNIPVRTELGAQMRKFFVAPKGRKLVDADYSQIEL 627

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R++AHL   K+M++AF +G D H+ TA  ++                   D P + +  +
Sbjct: 628  RVMAHLCGDKNMIEAFNSGEDIHTSTAAQVF-------------------DMPSIMVTPE 668

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 R  AK +NF I YG     LA+D   SV +AKK ++ +  + ++V  + E     
Sbjct: 669  M----RSAAKAVNFGIIYGIGAFSLAKDIGTSVAKAKKYINDYLAKYEKVNEFMETTVDN 724

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +  D +V T+ GR RR P + S  +  +   +R A+NTPVQG+AAD+   AM+ +    +
Sbjct: 725  AFKDGYVTTMFGRKRRIPELSSSNKMMQAAGKRIAMNTPVQGTAADLIKIAMINVYNRLK 784

Query: 1060 LKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             +++  KL+LQVHDE+ILE     AE A  ++ E M   +     ++V LSVD     +W
Sbjct: 785  AEDIDAKLILQVHDELILEASESDAEHAAQLLKEEMQNVY----EMKVPLSVDVHTGDSW 840

Query: 1120 YSAK 1123
            Y AK
Sbjct: 841  YEAK 844


>gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168]
 gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168]
          Length = 870

 Score =  179 bits (454), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 183/355 (51%), Gaps = 37/355 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++  K+    ++       IS   ++  + S   + + P+    ++   GR+H S 
Sbjct: 540  KTGYSTGAKVLEKLEDKHPIIPLISEYRQLMKLKSTYVDALPPM----INPDTGRLHTSF 595

Query: 829  N-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN-SLIVADYGQLELRILAHLA 886
            N + T TGRLS+  PNLQN P    +  +IR+AFI    +  L+ ADY Q+ELR+LAH++
Sbjct: 596  NQMVTATGRLSSTEPNLQNIPVRTDEGREIRRAFITENEDWVLLAADYSQIELRVLAHIS 655

Query: 887  NCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERR 946
            + + +  AF  G D H++TA  ++      VE  +V                    + RR
Sbjct: 656  DDEGLKAAFNTGQDIHTQTASEVF-----EVEPDEVT------------------PNMRR 692

Query: 947  KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006
             AK++NF IAYG +P GLARD  +S +EA   ++ ++     V  + E    E++   +V
Sbjct: 693  HAKVINFGIAYGMSPYGLARDLGISRQEASDYINKYFERFTGVKDYMERVVTEAKTKGYV 752

Query: 1007 HTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELG-- 1064
             T+  R R  P I S    +R+  ER AINTP+QG+AAD+   AM+++    RLKE G  
Sbjct: 753  TTIFNRRRYIPEINSRNYHRRSFAERTAINTPIQGTAADIMKLAMIKVYN--RLKENGSP 810

Query: 1065 WKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
             ++LLQVHDE+ILE P E       IV   M K      +++V L V+ +   NW
Sbjct: 811  ARILLQVHDELILEVPREDLTEMARIVKSEMEKAV----DMKVPLVVNLESGPNW 861


>gi|312984114|ref|ZP_07791461.1| DNA polymerase I [Lactobacillus crispatus CTV-05]
 gi|423319044|ref|ZP_17296920.1| DNA polymerase I [Lactobacillus crispatus FB049-03]
 gi|423320696|ref|ZP_17298568.1| DNA polymerase I [Lactobacillus crispatus FB077-07]
 gi|310894468|gb|EFQ43543.1| DNA polymerase I [Lactobacillus crispatus CTV-05]
 gi|405590567|gb|EKB64084.1| DNA polymerase I [Lactobacillus crispatus FB049-03]
 gi|405601115|gb|EKB74279.1| DNA polymerase I [Lactobacillus crispatus FB077-07]
          Length = 887

 Score =  179 bits (454), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 175/334 (52%), Gaps = 30/334 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            +S + +   I  + S ++  L   +V   +GRVH   L   T TGRLS+  PNLQN P  
Sbjct: 582  VSEILDYRQIAKIQSTYVKGL--LDVIQPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTR 639

Query: 851  EKDRYKIRQAFIAV-PGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AF+   P   +   DY Q+ELR+LAH++  ++M +AFK G D HS TAM +
Sbjct: 640  TEEGKQIRKAFVPTNPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMRI 699

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            + H+ +  E                PL+       RR AK +NF I YG +  GL+++  
Sbjct: 700  F-HLDSPDEV--------------TPLM-------RRHAKAVNFGIVYGISDYGLSKNLG 737

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            +S + A++ +D ++ +  ++  + +   + +R   +  T++ R R  P I +   + R+ 
Sbjct: 738  ISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSF 797

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER AIN+P+QGSAAD+   AM+ + K      L  K+++QVHDE+I + P +  E  K 
Sbjct: 798  AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKK 857

Query: 1090 IVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            IV E M         L V L  D+    NWY AK
Sbjct: 858  IVPEVMQSAV----KLDVPLIADSGWGHNWYDAK 887


>gi|419778225|ref|ZP_14304120.1| DNA-directed DNA polymerase [Streptococcus oralis SK10]
 gi|383187443|gb|EIC79894.1| DNA-directed DNA polymerase [Streptococcus oralis SK10]
          Length = 889

 Score =  179 bits (454), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 180/347 (51%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 570  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYVQDLTQTGRLS 629

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 630  SVDPNLQNIPVRLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 688

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P     +D   ++RR AK +NF + 
Sbjct: 689  EGADIHTSTAMRVF-----------------GIERP-----EDVTPNDRRNAKAVNFGVV 726

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 727  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 786

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQVHDE++
Sbjct: 787  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIV 846

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P       KA+V + M +       L V L  D      WY AK
Sbjct: 847  LEVPKSELAAVKALVKQTMEEAI----QLSVPLIADENEGATWYEAK 889


>gi|299822773|ref|ZP_07054659.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
 gi|299816302|gb|EFI83540.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
          Length = 903

 Score =  179 bits (454), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 113/321 (35%), Positives = 174/321 (54%), Gaps = 36/321 (11%)

Query: 812  LQGSNVSG-------KNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFI- 862
            LQ + V G       K  +VH   N   T+TGRLS+  PNLQN P   ++  KIRQ F+ 
Sbjct: 610  LQSTYVEGLLKVTDKKTSKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVP 669

Query: 863  AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQV 922
            + PG  +  ADY Q+ELR+LAH++  ++++ AF+   D H++TAM+++ H+  A E   +
Sbjct: 670  SHPGWKMFSADYSQVELRVLAHISQDENLVYAFRNDYDIHTKTAMDVF-HVSEA-EVDSL 727

Query: 923  LLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLW 982
            +                     RR+AK +NF I YG +  GL+++  ++ + AK  +D +
Sbjct: 728  M---------------------RRQAKAVNFGIVYGISDYGLSQNLGITRKAAKDFIDRY 766

Query: 983  YNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGS 1042
            +    +V  + E   + ++   +V T+L R R  P I S   + R+  ER A+NTP+QGS
Sbjct: 767  FASYPDVKVYMEEIVRSAKEKGYVETILHRRRYIPEITSRNFNVRSFAERTAMNTPIQGS 826

Query: 1043 AADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGK 1102
            AAD+   AML + +    +++  KLLLQVHDE+I E P   AE+AK  + E +       
Sbjct: 827  AADIIKQAMLLMDERLESEQMEAKLLLQVHDELIFEAP--EAEIAK--LAEIVPDVMENA 882

Query: 1103 NNLRVDLSVDAKCAQNWYSAK 1123
              L V L VD+    +WY AK
Sbjct: 883  VALSVPLKVDSAHGDSWYDAK 903


>gi|221236513|ref|YP_002518950.1| DNA polymerase I [Caulobacter crescentus NA1000]
 gi|220965686|gb|ACL97042.1| DNA polymerase I [Caulobacter crescentus NA1000]
          Length = 982

 Score =  179 bits (454), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 163/306 (53%), Gaps = 24/306 (7%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + ++   GRVH S  +  T TGRLS+  PNLQN P   ++  KIR+AF+A PG+ LI AD
Sbjct: 696  AAIAPSTGRVHTSYALAATTTGRLSSSDPNLQNIPVRTEEGRKIRKAFVAAPGHVLISAD 755

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+ +   +  AF+ G D H+ TA  M+      +E         G D   
Sbjct: 756  YSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMF---DTPIE---------GMD--- 800

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             P++       RR+AK +NF I YG +  GLA    +S  EA   +  ++     +  + 
Sbjct: 801  -PMI-------RRRAKAINFGIVYGISAFGLANQLGISQGEAGAYIKTYFERFPGIQAYM 852

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            +A K   R   +V T+ GR    P I++ + + R   ERAAIN P+QG+AADV   AM+ 
Sbjct: 853  DATKAFVREHGYVTTIFGRKINIPDIEAKSAAHRQFAERAAINAPIQGAAADVMRRAMIR 912

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            +        L  ++LLQVHDE++ E P   AE A A+V   M K       L + L+V+A
Sbjct: 913  MPVALEAAGLSTRMLLQVHDELVFEAPEAEAERACAVVRAVMEKAAEPAVALSIPLTVEA 972

Query: 1114 KCAQNW 1119
            + A NW
Sbjct: 973  RAASNW 978


>gi|357010982|ref|ZP_09075981.1| PolA [Paenibacillus elgii B69]
          Length = 895

 Score =  179 bits (454), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 110/323 (34%), Positives = 174/323 (53%), Gaps = 40/323 (12%)

Query: 812  LQGSNVSG-------KNGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFI- 862
            LQ + V G         G+VH         TGRLS++ PNLQN P   ++  KIR+ F  
Sbjct: 602  LQSTYVEGLLKEVRPSTGKVHTYYKQTIAATGRLSSQYPNLQNIPIRLEEGRKIRKVFFP 661

Query: 863  AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQV 922
            + PG  ++ ADY Q+ELR+LAH++  + +++AF+   D H++TAM+++      V++   
Sbjct: 662  SEPGWKILTADYSQIELRVLAHISQDEKLIEAFRENMDVHTKTAMDVFGVSEAEVDSNM- 720

Query: 923  LLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLW 982
                                  RR+AK +NF I YG +  GL+++  ++ ++A K ++ +
Sbjct: 721  ----------------------RRQAKAVNFGIVYGISDYGLSQNLHITRKDAAKFIEQY 758

Query: 983  YNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGS 1042
            +   Q V  + +   K++R D +V TLL R R  P I +   + R+  ER A+NTP+QG+
Sbjct: 759  FAVFQGVRQYMDDIVKKARQDGYVTTLLQRRRYLPEITASNFNLRSFAERTAMNTPIQGT 818

Query: 1043 AADVAMCAMLEISKNARLKELGW--KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFN 1100
            AAD+   AM+++  + R+KE G   ++LLQVHDE++ E P E  ++ K +V E M     
Sbjct: 819  AADIIKLAMVQL--DNRMKEEGVRSRMLLQVHDELVFEVPEEEIDLMKRMVAEVMESAL- 875

Query: 1101 GKNNLRVDLSVDAKCAQNWYSAK 1123
                L V L VD     NWY AK
Sbjct: 876  ---KLDVPLKVDVDAGDNWYEAK 895


>gi|225027062|ref|ZP_03716254.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353]
 gi|224955526|gb|EEG36735.1| DNA-directed DNA polymerase [Eubacterium hallii DSM 3353]
          Length = 878

 Score =  179 bits (454), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 167/305 (54%), Gaps = 28/305 (9%)

Query: 820  KNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            ++G++H   +   T TGRLS+  PNLQN P        IR+ F+   G   + ADY Q+E
Sbjct: 601  EDGKIHSIFHQKVTATGRLSSSDPNLQNIPIRMPLGRAIRKVFVPDSGYVFVSADYSQIE 660

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+A  + ++DA++ G D H  TA  ++      V   +V            PLL 
Sbjct: 661  LRVLAHMAGDEHLIDAYRHGEDIHRMTASQVF-----GVPFEEV-----------TPLL- 703

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GL++D K+S +EA + +D ++     + T+ +    
Sbjct: 704  ------RRSAKAVNFGIVYGISAFGLSQDLKISRKEASEYIDKYFATYPGIKTYLDGNVA 757

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             ++ + +V TL GR R  P + S    QR+  ER A+N+ +QG+AAD+   AM+ +SK  
Sbjct: 758  FAKKEGYVKTLYGRVRPIPELSSSNFMQRSFGERVAMNSSIQGTAADIIKIAMIRVSKRL 817

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            + ++L  +L+LQ+HDE+++E   +  E  + I+ E M     G  +L+V LS+D +  + 
Sbjct: 818  QEEKLASRLILQIHDELLIETKEDEVEEVRKILKEEMM----GAADLKVPLSIDIEEGKT 873

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 874  WYEAK 878


>gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105]
 gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105]
          Length = 927

 Score =  179 bits (454), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 162/307 (52%), Gaps = 28/307 (9%)

Query: 817  VSGKNGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+ + GRVH +       TGRL++  PNLQN P    +  ++R+AFIA PG  L+ ADY 
Sbjct: 647  VNARTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRRVREAFIAAPGCVLVSADYS 706

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AH++  ++++ AF  G D HS TA  ++    N V +                
Sbjct: 707  QIELRIMAHISGDEALIHAFNEGLDIHSATASEIFGVGLNEVTS---------------- 750

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR AK++NF + YG +  GLA +  ++ E AK  +D ++     V  + + 
Sbjct: 751  -------DHRRTAKVINFGLIYGMSAFGLAGNLGITREAAKLYIDRYFARYPGVAKFMDN 803

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             + +++ D  V T+ GR    P IKS    +R   ERAAIN P+QG++AD+   AM+E+S
Sbjct: 804  VRAQAKEDGFVQTVFGRRLWLPEIKSPNGPRRAGAERAAINAPMQGTSADLIKMAMVELS 863

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
               + ++L  K+++QVHDEVI E P    E+ +  V E M++       LRV L V    
Sbjct: 864  AWLKAEKLNSKMIMQVHDEVIFEVPKGELELIQKRVPEIMTQ----VAKLRVPLEVGCGV 919

Query: 1116 AQNWYSA 1122
              NW  A
Sbjct: 920  GNNWEEA 926


>gi|359786182|ref|ZP_09289321.1| DNA polymerase I [Halomonas sp. GFAJ-1]
 gi|359296551|gb|EHK60800.1| DNA polymerase I [Halomonas sp. GFAJ-1]
          Length = 926

 Score =  179 bits (453), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 161/303 (53%), Gaps = 28/303 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GRVH S +   T TGRLS+  PNLQN P   ++  KIRQAFIA PG  ++ ADY Q+EL
Sbjct: 650  TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAFIARPGYRIVAADYSQIEL 709

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K +LDAF  G D H+ TA  ++         G  L +  G+          
Sbjct: 710  RIMAHLSEDKGLLDAFADGRDIHTATAAEVF---------GTSLDKVSGD---------- 750

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                +RR AK +NF + YG +  GL+R   +   +A+  +D +++    V  + +  + +
Sbjct: 751  ----QRRSAKAINFGLIYGMSAWGLSRQLHIDRNQAQTYIDRYFDRYPGVARYMDRIRAQ 806

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +  D  V T+LGR    P I+S  R++R   ER AIN P+QG+AAD+   AM+++     
Sbjct: 807  AAEDGFVETVLGRRLYLPEIQSQNRNRRQGAERTAINAPMQGTAADIIKQAMIDVDAWLA 866

Query: 1060 LKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
              E    +++QVHDE++     E AE      +E + +   G   L+V L V+A+   NW
Sbjct: 867  EGEFDALMVMQVHDELVF----EVAEKQVDAFIEQVQQRMQGAAELKVPLIVEAESGANW 922

Query: 1120 YSA 1122
              A
Sbjct: 923  DEA 925


>gi|386071681|ref|YP_005986577.1| DNA polymerase I [Propionibacterium acnes ATCC 11828]
 gi|353456047|gb|AER06566.1| DNA polymerase I [Propionibacterium acnes ATCC 11828]
          Length = 915

 Score =  179 bits (453), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 166/304 (54%), Gaps = 29/304 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 637  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 696

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 697  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 733

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 734  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 793

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 794  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 853

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
                L  ++LLQVHDE+ILE      E  + IV   M        +L V L+V     ++
Sbjct: 854  AEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLSVPLTVSIGVGRS 909

Query: 1119 WYSA 1122
            W+ A
Sbjct: 910  WFDA 913


>gi|197122953|ref|YP_002134904.1| DNA polymerase I [Anaeromyxobacter sp. K]
 gi|196172802|gb|ACG73775.1| DNA polymerase I [Anaeromyxobacter sp. K]
          Length = 897

 Score =  179 bits (453), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 154/304 (50%), Gaps = 28/304 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V   +GR+H + +     TGRLS+  PNLQN P   +   +IRQAF+A  G  L+ ADY 
Sbjct: 617  VDPADGRIHTTFHQAGAATGRLSSSDPNLQNIPVRTELSRRIRQAFVAPAGARLLSADYS 676

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRILAH ++   +L AF+   D H+RTA   +      V   QV             
Sbjct: 677  QIELRILAHYSDDPGLLQAFRDREDVHTRTAAETF-----GVAPEQVT------------ 719

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                    +RR AK+LNF IAYG +  GL++   +   EA+  +D ++     V  + E 
Sbjct: 720  ------PDQRRIAKVLNFGIAYGLSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRRYIEW 773

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+R      TL GRAR  P I +   + RN  ER AINTP+QG+AAD+   AM+ + 
Sbjct: 774  AVEEARAKGESRTLFGRARAMPEIGAPNPALRNAAERTAINTPIQGTAADIVKIAMIRVH 833

Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
                 +    +LLLQVHDE++LE P    E  +A+V   M     G   L+V L V    
Sbjct: 834  DALAQERRAARLLLQVHDELVLEVPERELEPVEALVRREM----EGAARLKVPLEVQVGH 889

Query: 1116 AQNW 1119
             Q W
Sbjct: 890  GQTW 893


>gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter crescentus CB15]
 gi|13425184|gb|AAK25426.1| DNA polymerase I [Caulobacter crescentus CB15]
          Length = 967

 Score =  179 bits (453), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 163/306 (53%), Gaps = 24/306 (7%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + ++   GRVH S  +  T TGRLS+  PNLQN P   ++  KIR+AF+A PG+ LI AD
Sbjct: 681  AAIAPSTGRVHTSYALAATTTGRLSSSDPNLQNIPVRTEEGRKIRKAFVAAPGHVLISAD 740

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+ +   +  AF+ G D H+ TA  M+      +E         G D   
Sbjct: 741  YSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMF---DTPIE---------GMD--- 785

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             P++       RR+AK +NF I YG +  GLA    +S  EA   +  ++     +  + 
Sbjct: 786  -PMI-------RRRAKAINFGIVYGISAFGLANQLGISQGEAGAYIKTYFERFPGIQAYM 837

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            +A K   R   +V T+ GR    P I++ + + R   ERAAIN P+QG+AADV   AM+ 
Sbjct: 838  DATKAFVREHGYVTTIFGRKINIPDIEAKSAAHRQFAERAAINAPIQGAAADVMRRAMIR 897

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            +        L  ++LLQVHDE++ E P   AE A A+V   M K       L + L+V+A
Sbjct: 898  MPVALEAAGLSTRMLLQVHDELVFEAPEAEAERACAVVRAVMEKAAEPAVALSIPLTVEA 957

Query: 1114 KCAQNW 1119
            + A NW
Sbjct: 958  RAASNW 963


>gi|422466307|ref|ZP_16542883.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4]
 gi|422470233|ref|ZP_16546754.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3]
 gi|314980950|gb|EFT25044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3]
 gi|315091681|gb|EFT63657.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4]
          Length = 892

 Score =  179 bits (453), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 166/304 (54%), Gaps = 29/304 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 614  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 673

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 674  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 710

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 711  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 771  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 830

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
                L  ++LLQVHDE+ILE      E  + IV   M        +L V L+V     ++
Sbjct: 831  AEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLSVPLTVSIGVGRS 886

Query: 1119 WYSA 1122
            W+ A
Sbjct: 887  WFDA 890


>gi|420241838|ref|ZP_14745936.1| DNA polymerase I [Rhizobium sp. CF080]
 gi|398069376|gb|EJL60735.1| DNA polymerase I [Rhizobium sp. CF080]
          Length = 996

 Score =  179 bits (453), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 156/301 (51%), Gaps = 28/301 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  + +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ ADY Q+ELR+
Sbjct: 716  RVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLVSADYSQIELRV 775

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+                       VP+  +  
Sbjct: 776  LAHVADIPQLRQAFSDGIDIHAMTASEMF----------------------GVPV--EGM 811

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+ K  +
Sbjct: 812  PSEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESTKTFA 871

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P IKS   S R   ERA+IN P+QGSAAD+   AM ++      
Sbjct: 872  RENGYVETIFGRRAHYPEIKSSNPSVRAFNERASINAPIQGSAADIIRRAMAKMEPALET 931

Query: 1061 KELGW--KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              L    ++LLQVHDE+I E   E  +    +++  M        ++RV L VDA+ A N
Sbjct: 932  AGLNGRARMLLQVHDELIFEVEDEEIDKTLPVIISTMEHAAMPAISMRVPLKVDARAASN 991

Query: 1119 W 1119
            W
Sbjct: 992  W 992



 Score = 57.4 bits (137), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 97/249 (38%), Gaps = 57/249 (22%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           R+ L    P  EDPS+ KV  N  +D  V++ +G+ V G+  DTM M+ + ++ +   G 
Sbjct: 462 REALARLKPLLEDPSVLKVAQNLKYDYLVMKRHGITVEGYD-DTMLMSYVLEAGKSNHGM 520

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
            +L     + K                         I+ K++ G       G AG     
Sbjct: 521 DALSERWLNHK------------------------PITFKEVAG------SGKAGVTFDF 550

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
             +++          +Y+A D+  TL+L+  LK +L                +   Y+  
Sbjct: 551 VDIDKAT--------AYAAEDADVTLRLWMVLKPQL------------AAAGLTRIYERL 590

Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            +P   +L +ME  G+ +DR+ LS +         A  +   + A +         +GS 
Sbjct: 591 ERPLVSVLARMEERGITIDRQILSRLSGELAQRAAAFEDEIYELAGEK------FTIGSP 644

Query: 662 TQLRQLLFG 670
            QL  +LFG
Sbjct: 645 KQLGDILFG 653


>gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925]
 gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925]
          Length = 881

 Score =  179 bits (453), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 178/346 (51%), Gaps = 37/346 (10%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
            ++ +++   IS + E   I  L S ++  L+  +V  ++G++H S N   T TGRLS+  
Sbjct: 568  EKLKDSHPIISKIIEYRQITKLDSTYVEGLK--HVIDEDGKIHSSFNQTVTTTGRLSSTE 625

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNS---LIVADYGQLELRILAHLANCKSMLDAFKAG 898
            PNLQN P   +   +IR+ F  VP N    +  ADY Q+ELR+LAH+AN + ++DAFK  
Sbjct: 626  PNLQNIPIKYEMGREIRKVF--VPNNEESVIFSADYSQIELRVLAHIANDEKLIDAFKHH 683

Query: 899  GDFHSRTAMNMYP-HIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
             D H+ TA  ++  HI                     PL+       R  AK +NF I Y
Sbjct: 684  KDIHTITASEVFKVHIDEVT-----------------PLM-------RSNAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G     L++D  VS +EAK+ +D +++    V  + +    ++  D  V T++ R R  P
Sbjct: 720  GIGAFSLSKDINVSRKEAKEYIDTYFSRYPNVKKYIDEIISKAEQDGFVTTIMNRKRYIP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVIL 1077
             ++S  +  R+  ER A+NTP+QGSAADV   AM+ + +    + L   L+LQVHDE+IL
Sbjct: 780  EVQSRNKIVRSFGERLAMNTPIQGSAADVIKLAMVHVYEELIKRNLKSTLILQVHDELIL 839

Query: 1078 EGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
                +  E  K +VV+ M     G  NL V L  D      WY AK
Sbjct: 840  NVYKDELEEVKQMVVDKME----GVMNLLVPLEADVNVGTTWYEAK 881


>gi|422459763|ref|ZP_16536411.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2]
 gi|315103141|gb|EFT75117.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2]
          Length = 892

 Score =  179 bits (453), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 166/304 (54%), Gaps = 29/304 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 614  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 673

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 674  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 710

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 711  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 771  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 830

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
                L  ++LLQVHDE+ILE      E  + IV   M        +L V L+V     ++
Sbjct: 831  AEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLSVPLTVSIGVGRS 886

Query: 1119 WYSA 1122
            W+ A
Sbjct: 887  WFDA 890


>gi|422390901|ref|ZP_16470996.1| DNA polymerase I [Propionibacterium acnes HL103PA1]
 gi|422464644|ref|ZP_16541251.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1]
 gi|422564994|ref|ZP_16640645.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2]
 gi|422576185|ref|ZP_16651723.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1]
 gi|314923227|gb|EFS87058.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1]
 gi|314966994|gb|EFT11093.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2]
 gi|315093085|gb|EFT65061.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1]
 gi|327327814|gb|EGE69590.1| DNA polymerase I [Propionibacterium acnes HL103PA1]
          Length = 892

 Score =  179 bits (453), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 166/304 (54%), Gaps = 29/304 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 614  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 673

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 674  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 710

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 711  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 771  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 830

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
                L  ++LLQVHDE+ILE      E  + IV   M        +L V L+V     ++
Sbjct: 831  AEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLSVPLTVSIGVGRS 886

Query: 1119 WYSA 1122
            W+ A
Sbjct: 887  WFDA 890


>gi|282854241|ref|ZP_06263578.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
 gi|282583694|gb|EFB89074.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
          Length = 910

 Score =  179 bits (453), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 166/304 (54%), Gaps = 29/304 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 632  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 691

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 692  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 728

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 729  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 788

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 789  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 848

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
                L  ++LLQVHDE+ILE      E  + IV   M        +L V L+V     ++
Sbjct: 849  AEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLSVPLTVSIGVGRS 904

Query: 1119 WYSA 1122
            W+ A
Sbjct: 905  WFDA 908


>gi|395783696|ref|ZP_10463545.1| DNA polymerase I [Bartonella melophagi K-2C]
 gi|395425818|gb|EJF91978.1| DNA polymerase I [Bartonella melophagi K-2C]
          Length = 968

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/316 (36%), Positives = 161/316 (50%), Gaps = 32/316 (10%)

Query: 808  FILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG 866
            +ILP        + GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA  G
Sbjct: 683  YILP--------ETGRVHTNYSLATTSTGRLSSSEPNLQNIPIRTPEGRKIRTAFIAPKG 734

Query: 867  NSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW 926
              L+ ADY Q+ELRILAH+AN  ++ +AF    D H+ TA  ++           V +E 
Sbjct: 735  CVLLSADYSQIELRILAHIANITALKEAFAQDQDIHAITASQVF----------GVAVEG 784

Query: 927  HGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNER 986
               D              RR+AK +NF I YG +  GLA    +S  EA   +D+++   
Sbjct: 785  MPSDI-------------RRRAKAINFGIIYGISAFGLANQLNISRNEASHYIDIYFERF 831

Query: 987  QEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADV 1046
              +  + E  K  +R   +V T+ GR   +P IK+     R   ERAAIN  +QGSAAD+
Sbjct: 832  PGIKGYIETTKSFARQHGYVETIFGRRIHYPEIKATNSQIRTFNERAAINATIQGSAADI 891

Query: 1047 AMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLR 1106
               AM+++    + ++L  K+LLQVHDE+I E     +E  K +V + M        +L 
Sbjct: 892  IRRAMIQMEGALKKEKLSAKMLLQVHDELIFEVLETESEKTKVLVKKVMENATMPALSLS 951

Query: 1107 VDLSVDAKCAQNWYSA 1122
            V L V    AQNW  A
Sbjct: 952  VPLKVKVVAAQNWNEA 967



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 109/268 (40%), Gaps = 74/268 (27%)

Query: 415 DLLDGG-------GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMH 467
           DLL GG        + +L    P  ED +I K+ +N  ++  +++ Y + +  F  D M 
Sbjct: 422 DLLGGGHVVTQIETQKVLTLLKPILEDQAILKIGYNMKYNWLIMKRYNIVIQPFD-DIML 480

Query: 468 MARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR 527
           ++   ++   T           DR ++SE    ++    K  T  G              
Sbjct: 481 ISYALNTGTSTH----------DRSILSERWLKHKPIAYKNLTHNG-------------- 516

Query: 528 KLKKDGSAGKISTIAPVEELQREERELWISYSAFDSIN-TLKLYKSLKKKLLEMSWKLDG 586
                    K+++ A V+  Q        ++ A +S N TL+L++ LK +L+        
Sbjct: 517 --------KKVTSFAQVDLKQA-------TFYAAESANITLRLWQVLKPQLV-------- 553

Query: 587 KPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLS----EIEKVARAEQEAAVNRF 642
                + +   Y+   +P  E+L KME  G+LVDR+ LS    E+ + A + +E      
Sbjct: 554 ----AQRVTKIYERLDRPLIEVLAKMEERGILVDRQILSRLSCELAQAALSLEE----EI 605

Query: 643 RKWASKHCPDAKYMNVGSDTQLRQLLFG 670
            K A +        N+ S  QL  +LFG
Sbjct: 606 YKLAGER------FNIASPKQLSDILFG 627


>gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB]
 gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB]
          Length = 928

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 165/312 (52%), Gaps = 32/312 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + +SG   RVH S +   T TGRLS+  PNLQN P    +  +IRQAF+A  G+ 
Sbjct: 643  LPLMINPISG---RVHTSYHQAVTATGRLSSADPNLQNIPVRNDEGRRIRQAFVAAKGHR 699

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +LDAF  G D H  TA  ++         G  L +  G
Sbjct: 700  IVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVF---------GVALDKVSG 750

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 751  E--------------QRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 796

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++ +  + +V TL GR    P IKS    +R   ERAAIN P+QG+AAD+  
Sbjct: 797  VLRYMENTRQLAASNGYVETLEGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIK 856

Query: 1049 CAMLEISK-NARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRV 1107
             AM+ + +   +  +   ++++QVHDE++ E  +E+ E A   +   M     G   L V
Sbjct: 857  RAMIAVDEWLEQQNDNAVRMIMQVHDELVFEVKAEAVEEASQKIRALM----EGSVQLDV 912

Query: 1108 DLSVDAKCAQNW 1119
             L V+     NW
Sbjct: 913  PLLVEVGVGNNW 924


>gi|421075531|ref|ZP_15536544.1| DNA polymerase I [Pelosinus fermentans JBW45]
 gi|392526529|gb|EIW49642.1| DNA polymerase I [Pelosinus fermentans JBW45]
          Length = 874

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 169/309 (54%), Gaps = 29/309 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADY 874
            +S   GR+H + N + T TGRLS+  PNLQN P   +   KIR+ FI   G + L+ ADY
Sbjct: 593  ISPATGRIHTTFNQMVTATGRLSSSEPNLQNIPIRTEIGKKIRELFIPGAGYDYLMSADY 652

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LA ++   +++++F    D H+RTA  ++                       V
Sbjct: 653  SQIELRVLADMSGDANLIESFAKEQDVHTRTAAEVFE----------------------V 690

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            P+ ++  +  R +AK +NF I YG +  GL+RD  VS +EA + ++ ++ +   V  + +
Sbjct: 691  PM-EEVTSELRSRAKAVNFGIVYGISDYGLSRDIGVSRKEASQYIENYFTKYNGVKAFMD 749

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
                 +    +V TLLGR R  P I S   +QR+  ER A+NTP+QG+AAD+   AM+++
Sbjct: 750  KAVGAAHQQGYVTTLLGRRRYLPDINSKNFNQRSFAERTAMNTPIQGTAADIIKKAMVDV 809

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
             +  + ++L  ++LLQVHDE++LE P    E    IV E M +       L+V L VD K
Sbjct: 810  YRALQKEKLQSRILLQVHDELVLEVPIGEVEQVSKIVKEAMEQSV----MLKVPLVVDVK 865

Query: 1115 CAQNWYSAK 1123
              +NW  AK
Sbjct: 866  IGKNWADAK 874


>gi|378765067|ref|YP_005193526.1| DNA polymerase I [Pantoea ananatis LMG 5342]
 gi|386017735|ref|YP_005936034.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
 gi|386077330|ref|YP_005990855.1| DNA polymerase I PolA [Pantoea ananatis PA13]
 gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
 gi|354986511|gb|AER30635.1| DNA polymerase I PolA [Pantoea ananatis PA13]
 gi|365184539|emb|CCF07489.1| DNA polymerase I [Pantoea ananatis LMG 5342]
          Length = 928

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/315 (36%), Positives = 164/315 (52%), Gaps = 32/315 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+  PNLQN P    +  +IRQAF+A  GN 
Sbjct: 643  LPLMINPVSG---RVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNR 699

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +LDAF  G D H  TA  ++                  
Sbjct: 700  IVAADYSQIELRIMAHLSQDKGLLDAFSQGEDIHRATASEVF------------------ 741

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                 VPL K     +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 742  ----GVPLSK-VTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 796

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++ +  + +V TL GR    P IKS    +R   ERAAIN P+QG+AAD+  
Sbjct: 797  VLRYMENTRQLAASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIK 856

Query: 1049 CAMLEISK-NARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRV 1107
             AM+ +     +  +   ++++QVHDE++ E  +E+ + A   +   M     G   L V
Sbjct: 857  RAMIAVDDWLQKQTDDAVRMIMQVHDELVFEIKAEAVDEASKQIRALM----EGSMALDV 912

Query: 1108 DLSVDAKCAQNWYSA 1122
             L V+     NW  A
Sbjct: 913  PLLVEVGVGDNWDQA 927



 Score = 43.9 bits (102), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 108/257 (42%), Gaps = 60/257 (23%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L +  P  EDP   KV  N  +D  VL+NY ++++G   DTM  + + +S     G + 
Sbjct: 400 VLAQLKPLLEDPDASKVGQNLKYDRGVLKNYDIELAGIKYDTMLESYILNS---VVGKHD 456

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L+   + ++     +++   KG     F  +I++                       
Sbjct: 457 MDSLSA--RWLNHKTITFEEIAGKGKNQLTF-NQIAL----------------------- 490

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
                    E    Y+A D+  TL+L+       L+M  +L+ +  P K     +++   
Sbjct: 491 ---------EQAAHYAAEDADVTLQLH-------LKMWPELEKEAGPKK----VFEQIEM 530

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASK-HCPDAKYMNVGSDT 662
           P  +++ ++E  G+L+D+  L++  K          +R  +   K H    +  N+ S  
Sbjct: 531 PLLKVISRVERNGVLIDQAILAQHSK-------ELTSRLAELELKAHELAGEPFNLSSTK 583

Query: 663 QLRQLLF---GGKPNSK 676
           QL+ +LF   G KP  K
Sbjct: 584 QLQVILFEKQGIKPTKK 600


>gi|422759941|ref|ZP_16813703.1| DNA polymerase I [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
            27957]
 gi|322412776|gb|EFY03684.1| DNA polymerase I [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
            27957]
          Length = 880

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/347 (32%), Positives = 180/347 (51%), Gaps = 38/347 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 621  SVDPNLQNIPVRLEQGRL-IRKAFTPSQEDAVLLSSDYSQIELRLLAHISGDEHLIAAFN 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++      +E  +                 D  A++RR AK +NF I 
Sbjct: 680  EGADIHTSTAMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  ++ ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ +    +      K+LLQVHDE++
Sbjct: 778  PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDNALQAGGFKAKMLLQVHDEIV 837

Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            LE P+      K +V E M        +L V L  D    Q+WY AK
Sbjct: 838  LEVPNTELAAVKKLVKETMEVAV----DLAVPLRADENAGQSWYEAK 880


>gi|167747107|ref|ZP_02419234.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662]
 gi|167654067|gb|EDR98196.1| DNA-directed DNA polymerase [Anaerostipes caccae DSM 14662]
          Length = 880

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 178/335 (53%), Gaps = 34/335 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPAL 850
            IS + E   +  L S +   L  +N  G + R+H   N   T TGR+S+  PNLQN PA 
Sbjct: 577  ISYILEYRQLTKLKSTYADGL--ANYIGDDERIHGKFNQTITATGRISSTEPNLQNIPAR 634

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
             +    IR+ F+   G + + ADY Q+ELR+LAHL+  K+++ A++   D H+RTA  ++
Sbjct: 635  VELGRAIRKVFLPEEGYTFVDADYSQIELRVLAHLSGDKNLIHAYEMEQDIHARTASEVF 694

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFAS-ERRKAKMLNFSIAYGKTPVGLARDWK 969
                                   VP+  D  +S +RR AK +NF I YG +  GL++D K
Sbjct: 695  G----------------------VPI--DQVSSIQRRDAKAVNFGIVYGLSAFGLSQDLK 730

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            ++ ++A++ +D ++    +V  +     ++ + +  V T+  R R  P +KS    QRN 
Sbjct: 731  ITRKQAQEYIDKYFETYPKVKEYLNREVEKGKEEGFVTTMFQRIRPIPELKSSNFMQRNF 790

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKA 1089
             ER A+N+P+QGSAAD+   AM+ ++   + ++L  +L+LQ+HDE+++E      E  K 
Sbjct: 791  GERVAMNSPIQGSAADIIKIAMIRVNMELKKRKLKSRLILQIHDELLIEAHDSEVEEVKG 850

Query: 1090 IVV-ECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            I+  E MS        L V LS+D     +WY AK
Sbjct: 851  ILTREMMSAA-----KLSVPLSIDIHTGNSWYEAK 880


>gi|376295933|ref|YP_005167163.1| DNA polymerase I [Desulfovibrio desulfuricans ND132]
 gi|323458494|gb|EGB14359.1| DNA polymerase I [Desulfovibrio desulfuricans ND132]
          Length = 888

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 180/354 (50%), Gaps = 33/354 (9%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN 829
            G  ++ N++    ++ R+    + A+ E   ++ L S ++ PL    + G++GR+H   N
Sbjct: 566  GLRSTANQVL---EKIRDQHPIVDAVLEFRMLEKLRSTYLEPL--PKMVGEDGRLHTHFN 620

Query: 830  -INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
             ++T TGRLS+ +PNLQN P       ++R  F A  GN L  ADY Q+ELR+LAH +  
Sbjct: 621  QLSTATGRLSSSQPNLQNIPIRGVHGPRMRACFNAAEGNMLAAADYSQIELRVLAHFSKD 680

Query: 889  KSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKA 948
              ++DAF+   D H+RTA  ++    +AV                          ERR A
Sbjct: 681  PELIDAFRHDEDIHARTAALIHDKDISAVTP-----------------------DERRGA 717

Query: 949  KMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHT 1008
            K +NF + YG     LAR+ ++   EA++  + ++ +   +  + +   K++     V T
Sbjct: 718  KTINFGLIYGMGVQKLARELQIKQTEAQEFTEKYFAKMATLKAYYDTVVKDAETHGFVTT 777

Query: 1009 LLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLL 1068
            L GR R  P + S          R A+NT +QGSAAD+   AM++  K+ RL+ELG +L+
Sbjct: 778  LAGRRRLLPELHSRNNQLSAQARRQAVNTVIQGSAADIIKMAMVQAHKDKRLRELGAQLI 837

Query: 1069 LQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            LQVHDE+I+E P  + + A   ++E M         L V L VD    +NW  A
Sbjct: 838  LQVHDELIIEAPEANIKEAGGRLLEIMQT----VAKLDVPLKVDMGVGKNWAEA 887


>gi|429766177|ref|ZP_19298451.1| DNA-directed DNA polymerase [Clostridium celatum DSM 1785]
 gi|429185157|gb|EKY26146.1| DNA-directed DNA polymerase [Clostridium celatum DSM 1785]
          Length = 869

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 171/310 (55%), Gaps = 29/310 (9%)

Query: 816  NVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-D 873
            NV  ++G +H S N   T TGRLS+  PNLQN P   +   +IR+ FI      ++++ D
Sbjct: 587  NVIDEDGAIHSSFNQTVTTTGRLSSTEPNLQNIPVKYEMGREIRKVFIPKEDTDVLLSCD 646

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+A+ K+M+DAF    D H++TA  ++                    K P
Sbjct: 647  YSQIELRVLAHMADDKNMIDAFNHHSDIHTKTASEVF--------------------KVP 686

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
            V   ++  +  R +AK +NF I YG +   L++D K++ +EA + ++++++   ++  + 
Sbjct: 687  V---EEVTSIMRSRAKAVNFGIVYGISDFSLSQDLKITKKEASEYMEIYFDRYPKIKGYL 743

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E+ K+E++   +V T+L R R  P IKS  +  +   ER A+N P+QGSAAD+   AM++
Sbjct: 744  ESAKEEAKEKGYVLTILNRRRFIPEIKSSNKIVKALGERLAMNAPIQGSAADIIKLAMVK 803

Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDA 1113
            +      ++L  +++LQVHDE+IL    +  EV KA+V E M         + V L VD 
Sbjct: 804  VYDRLNKEKLESEIILQVHDELILNVKEKELEVVKALVKEEMENVL----KMSVALEVDT 859

Query: 1114 KCAQNWYSAK 1123
                 WY AK
Sbjct: 860  NIGNTWYDAK 869


>gi|423313082|ref|ZP_17291018.1| DNA polymerase I [Bacteroides vulgatus CL09T03C04]
 gi|392686296|gb|EIY79602.1| DNA polymerase I [Bacteroides vulgatus CL09T03C04]
          Length = 971

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 174/351 (49%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     + +  + E   +  L+  +I  LPL    ++ + G++H S N   
Sbjct: 650  YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+   +M
Sbjct: 707  TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNM 766

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AFK G D H+ TA  +Y      +   +V  E                  +R KAK  
Sbjct: 767  IEAFKEGDDIHAATAAKVY-----KISIDKVTRE------------------QRSKAKTA 803

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    ++  + +     +R   ++ T+ G
Sbjct: 804  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARGQGYIETIFG 863

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM+ I +  + + +  K++LQV
Sbjct: 864  RKRYLPDINSRNSVVRGYAERNAINAPIQGSAADIIKVAMVRIYQRFQSESIKSKMILQV 923

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+      E  E  + IV+E M   +     ++V L  D     NW  A
Sbjct: 924  HDELNFSVLPEEKEKVQKIVIEEMENAY----RMQVPLRADCGWGSNWLEA 970



 Score = 43.5 bits (101), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 18/132 (13%)

Query: 342 YSNVMVVDN-------VSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
           YSN+  +DN       V   +K   +L N     + + DTE    D     P+   E++ 
Sbjct: 366 YSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDTETTGTD-----PIT-AELVG 419

Query: 395 FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY 454
            S        F      + V       + ++NEF P FE   + KV  N  +D  VL NY
Sbjct: 420 MSFSYAENQAF-----YVPVPADRAEAQKIVNEFRPAFEKEGVLKVGQNIKYDMLVLGNY 474

Query: 455 GLKVSGFHADTM 466
           G +V G   DTM
Sbjct: 475 GTEVRGPLFDTM 486


>gi|374606089|ref|ZP_09678986.1| DNA polymerase i [Paenibacillus dendritiformis C454]
 gi|374388316|gb|EHQ59741.1| DNA polymerase i [Paenibacillus dendritiformis C454]
          Length = 889

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 184/353 (52%), Gaps = 38/353 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL-NINTE 833
            ++T+ E  E      D I  +     +  L S +I  L    V    G+VH         
Sbjct: 567  YSTDAEVLEKLEPYHDIIPLILLYRQMTKLQSTYIEGLL-KEVRESTGKVHTYYRQTIAA 625

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSML 892
            TGRLS++ PNLQN P   ++  +IRQAF+ + PG  ++ ADY Q+ELR+LAH++    + 
Sbjct: 626  TGRLSSQYPNLQNIPIRLEEGRQIRQAFVPSEPGWHIVAADYSQIELRVLAHISGDDKLK 685

Query: 893  DAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLN 952
            +AF    D H++TAM+++    + V++                         RR+AK +N
Sbjct: 686  EAFIHDMDIHTKTAMDVFGVAADQVDSNM-----------------------RRQAKAVN 722

Query: 953  FSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGR 1012
            F I YG +  GL+++  ++ +EA   +D +++  + V  + +   K++R D +V TLL R
Sbjct: 723  FGIVYGISDYGLSQNLHITRKEAAAFIDQYFHVFRGVRQYMDDIVKQARQDGYVTTLLER 782

Query: 1013 ARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQ 1070
             R    I +   + R+  ER A+NTP+QG+AAD+   AM+++  +A+LKELG K  +LLQ
Sbjct: 783  RRYLKDINASNYNLRSFAERTAMNTPIQGTAADIIKLAMVQM--DAKLKELGLKSRMLLQ 840

Query: 1071 VHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            VHDE++ E P +  +  K +V E M         L V L  D     NWY AK
Sbjct: 841  VHDELVFEVPEDEVDTMKKLVPEVMEAAL----KLDVPLRADVSSGSNWYEAK 889


>gi|393774005|ref|ZP_10362387.1| DNA polymerase I [Novosphingobium sp. Rr 2-17]
 gi|392720591|gb|EIZ78074.1| DNA polymerase I [Novosphingobium sp. Rr 2-17]
          Length = 956

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/362 (32%), Positives = 177/362 (48%), Gaps = 35/362 (9%)

Query: 768  YKGAVASNNKIFATEQE-----AREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNG 822
            YKG     +  ++T+Q      A +     S + E   +  L S +   LQ + ++   G
Sbjct: 622  YKGGRKGKSGQYSTDQAILEGLAGQGAVVASKVLEWRQLSKLRSTYTEALQAA-INPATG 680

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S + +  +TGRLS+  PNLQN P   +   +IR  F+A PGN L+ ADY Q+ELR+
Sbjct: 681  RVHTSYSLVGAQTGRLSSTDPNLQNIPIRTEIGRQIRHCFVAEPGNVLLAADYSQIELRL 740

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
             AH+A+  S+ +AF AG D HSRTAM M+  +                            
Sbjct: 741  AAHMADVPSLKEAFAAGEDIHSRTAMEMFGTVDR-------------------------- 774

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               R +AK +NF+I YG +  GLA       +EA+  +D ++     +  +     +  R
Sbjct: 775  -DTRGRAKTINFAILYGISRWGLAGRLGTEADEAQAMIDRYFERFPGIQRYIHETLESVR 833

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +  TL GR   FP I S  +++R   ERAAIN P+QG++AD+   AM  ++      
Sbjct: 834  AKGYSETLFGRKTWFPRITSKNQAERQGSERAAINAPIQGTSADIIKRAMARMNPALAQA 893

Query: 1062 ELGW-KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWY 1120
             LG  ++LLQVHDE++ E P    E A  ++   MS+       L V L V+    ++W 
Sbjct: 894  GLGHVRMLLQVHDELVFELPEADVEAATPVIHAVMSEAALPAVTLDVPLGVEIGFGKSWG 953

Query: 1121 SA 1122
            +A
Sbjct: 954  AA 955


>gi|297559935|ref|YP_003678909.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM
            43111]
 gi|296844383|gb|ADH66403.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM
            43111]
          Length = 928

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 172/307 (56%), Gaps = 35/307 (11%)

Query: 821  NGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GR+H + N     TGRLS+  PNLQN P       +IR+AF+   G   L+ ADY Q+E
Sbjct: 650  DGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDVGRRIRRAFVVGEGYEELLTADYSQIE 709

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LRI+AHL+  ++++DAF +G DFH++ A  ++      VE  QV     GE         
Sbjct: 710  LRIMAHLSGEQALIDAFNSGYDFHAQMAAQIFD-----VEVEQV----DGE--------- 751

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  R + K +++ +AYG +  GL++   ++ EE+K+ ++ ++ E   V  +  A  +
Sbjct: 752  -----ARSRIKAMSYGLAYGLSAYGLSQQLGITPEESKRLMEDYFAEFGGVRDYLNAMVE 806

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            E+R   +  T+LGR R  P + S  R +R   ER A+N P+QGSAAD+   AML +  +A
Sbjct: 807  EARRVGYTETILGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADIIKVAMLRV--DA 864

Query: 1059 RLKELGW--KLLLQVHDEVILE-GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
             L E G   ++LLQVHDE+++E  P E AEV + IV   MS  +    +LRV L+V    
Sbjct: 865  ALTEGGLTSRVLLQVHDELVVEVAPGERAEV-ENIVAREMSSAY----DLRVPLAVSVGS 919

Query: 1116 AQNWYSA 1122
             QNW+ A
Sbjct: 920  GQNWHDA 926


>gi|419818326|ref|ZP_14342384.1| DNA polymerase I [Streptococcus sp. GMD4S]
 gi|404463421|gb|EKA09065.1| DNA polymerase I [Streptococcus sp. GMD4S]
          Length = 804

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 183/349 (52%), Gaps = 42/349 (12%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 485  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYVQDLTQTGRLS 544

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 545  SVDPNLQNIPVRLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 603

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P     +D   ++RR AK +NF + 
Sbjct: 604  EGADIHTSTAMRVF-----------------GIERP-----EDVTPNDRRNAKAVNFGVV 641

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S ++AK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 642  YGISDFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFKRRREL 701

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDE 1074
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K   L E G+  K+LLQVHDE
Sbjct: 702  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDK--ALVEGGYQTKMLLQVHDE 759

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            ++LE P       K +V + M +       L V L  D      WY AK
Sbjct: 760  IVLEVPKSELAAVKTLVKQTMEEAI----QLSVPLIADENEGATWYEAK 804


>gi|188532189|ref|YP_001905986.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
 gi|188027231|emb|CAO95070.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
          Length = 929

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/323 (35%), Positives = 164/323 (50%), Gaps = 48/323 (14%)

Query: 810  LPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    ++  +GRVH S +   T TGRLS+  PNLQN P    +  +IRQAFIA PG  
Sbjct: 644  LPLM---INPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPPGYR 700

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF +  D H  TA  ++         G  L +  G
Sbjct: 701  IVAADYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVF---------GVSLDKVSG 751

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 752  E--------------QRRSAKAINFGLIYGMSSFGLSRQLNIGAGEAKKYMDLYFERYPG 797

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E+ ++ +    +V TL GR    P I +    +R   ERAAIN P+QG+AAD+  
Sbjct: 798  VLQYMESTRELAAEKGYVSTLDGRRLYLPDINASNAIRRKAAERAAINAPMQGTAADIIK 857

Query: 1049 CAMLEISKNARLKELGW---------KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPF 1099
             AM+ +         GW         K+++QVHDE++ E  +++ E A A +   M    
Sbjct: 858  RAMIAVD--------GWLEQQTSPDVKMIMQVHDELVFEVRADAVEAASAQIRALM---- 905

Query: 1100 NGKNNLRVDLSVDAKCAQNWYSA 1122
             G   L V L VD     NW  A
Sbjct: 906  EGSMALDVPLRVDIGVGDNWDQA 928


>gi|268319916|ref|YP_003293572.1| DNA polymerase I [Lactobacillus johnsonii FI9785]
 gi|262398291|emb|CAX67305.1| DNA polymerase I [Lactobacillus johnsonii FI9785]
          Length = 886

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 165/305 (54%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLE 878
            +GR+H   L   T TGRLS+  PNLQN P    +  +IR+AF+    +  I + DY Q+E
Sbjct: 608  DGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTNEGKQIRKAFVPSTKDGYIFSCDYSQVE 667

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH++  + M +AFK+G D H+ TAM ++ H+ +  E                PL+ 
Sbjct: 668  LRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIF-HLDSPDEV--------------TPLM- 711

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GL+++  +S ++AK  ++ ++ +  ++  + +   K
Sbjct: 712  ------RRHAKAVNFGIVYGISDYGLSKNLGISRKQAKTFIENYFEQYPQIKNYMDDAIK 765

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R + +  T++ R R  P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  
Sbjct: 766  KARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKL 825

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
                L  K++LQVHDE+I + P +  +  K IV E M         L V L  D+    N
Sbjct: 826  DELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAV----KLDVPLIADSNWGHN 881

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 882  WYDAK 886


>gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
 gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
          Length = 971

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 174/351 (49%), Gaps = 37/351 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     + +  + E   +  L+  +I  LPL    ++ + G++H S N   
Sbjct: 650  YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+   +M
Sbjct: 707  TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNM 766

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AFK G D H+ TA  +Y      +   +V  E                  +R KAK  
Sbjct: 767  IEAFKEGDDIHAATAAKVY-----KISIDKVTRE------------------QRSKAKTA 803

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    ++  + +     +R   ++ T+ G
Sbjct: 804  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARGQGYIETIFG 863

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM+ I +  + + +  K++LQV
Sbjct: 864  RKRYLPDINSRNSVVRGYAERNAINAPIQGSAADIIKVAMVRIYQRFQSESIKSKMILQV 923

Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            HDE+      E  E  + IV+E M   +     ++V L  D     NW  A
Sbjct: 924  HDELNFSVLPEEKEKVQKIVIEEMENAY----RMQVPLRADCGWGSNWLEA 970



 Score = 43.5 bits (101), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 18/132 (13%)

Query: 342 YSNVMVVDN-------VSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
           YSN+  +DN       V   +K   +L N     + + DTE    D     P+   E++ 
Sbjct: 366 YSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDTETTGTD-----PIT-AELVG 419

Query: 395 FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY 454
            S        F      + V       + ++NEF P FE   + KV  N  +D  VL NY
Sbjct: 420 MSFSYAENQAF-----YVPVPADRAEAQKIVNEFRPAFEKEGVLKVGQNIKYDMLVLGNY 474

Query: 455 GLKVSGFHADTM 466
           G +V G   DTM
Sbjct: 475 GTEVRGPLFDTM 486


>gi|401683743|ref|ZP_10815628.1| DNA-directed DNA polymerase [Streptococcus sp. BS35b]
 gi|400186783|gb|EJO20988.1| DNA-directed DNA polymerase [Streptococcus sp. BS35b]
          Length = 889

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 183/349 (52%), Gaps = 42/349 (12%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 570  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVVGLQDWILDDGKIHTRYVQDLTQTGRLS 629

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE  R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 630  SVDPNLQNIPVRLEHGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 688

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P     +D   ++RR AK +NF + 
Sbjct: 689  EGADIHTSTAMRVF-----------------GIERP-----EDVTPNDRRNAKAVNFGVV 726

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 727  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 786

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDE 1074
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K   L E G+  K+LLQVHDE
Sbjct: 787  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDK--ALVEGGYQTKMLLQVHDE 844

Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            ++LE P       KA+V + M +       L V L  D      WY AK
Sbjct: 845  IVLEVPKSELAAVKALVKQTMEEAI----QLSVPLIADENEGATWYEAK 889


>gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010]
 gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010]
          Length = 894

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 166/314 (52%), Gaps = 31/314 (9%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPLQ   V+  +GRVH S +   T TGRLS+  PNLQN P   ++  +IR+AF+A  G +
Sbjct: 610  LPLQ---VNKSSGRVHTSYHQAVTATGRLSSSDPNLQNIPIRSENGRRIREAFVASNGYT 666

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            L+ ADY Q+ELRI+AHL+  +S+L AF AG D H  TA  ++           + LE   
Sbjct: 667  LLAADYSQIELRIMAHLSGDESLLKAFAAGEDIHRHTASEIF----------DIALE--- 713

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                      D  + +RR AK +NF + YG +  GL++   +   +A   +  +++    
Sbjct: 714  ----------DVSSDQRRSAKAINFGLIYGMSAHGLSKQLGIERHQAADYMQTYFDRYPG 763

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            V  + +  +++++   +V T+ GR    P I S    +R + ER AIN P+QGSAAD+  
Sbjct: 764  VRQYMDNTREQAKEQGYVETIFGRRLYLPEINSSNGMRRQYAERTAINAPMQGSAADIIK 823

Query: 1049 CAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVD 1108
             AM+ I       + G ++++QVHDE++ E P E  ++AK    + + K   G   L+V 
Sbjct: 824  RAMIAIHSWLSEADTGIRMIMQVHDELVFEVPLEQLDMAK----DTIEKFMMGAAELKVP 879

Query: 1109 LSVDAKCAQNWYSA 1122
            L V      NW  A
Sbjct: 880  LEVGIGVGDNWEQA 893



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 135/319 (42%), Gaps = 79/319 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           ++ +  P  EDP+  KV  N  +D HVL N+ + + G   DTM  + + DS   T   + 
Sbjct: 366 VMADLKPLLEDPTKLKVGQNLKYDRHVLLNHDINLQGIAHDTMLESYVLDS---TATRHD 422

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L          KK   +D             I  +DI G+ K +   +   +   AP
Sbjct: 423 MDSLA---------KKYLDRD------------TIHFEDIAGKGKKQLTFNQIGLEEAAP 461

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
                         Y+A D+  TL+L+++L  ++         + +P  S+   Y E   
Sbjct: 462 --------------YAAEDADITLQLHETLWPRI---------QAIP--SLVKVYSELEM 496

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
           P   +L  +E  G+ +D  ++ + +    A Q A + +       H    +  N+GS  Q
Sbjct: 497 PLLPVLNTLERNGVNIDI-WMLQSQSDNMAHQIAELEK-----QAHESAGQTFNLGSPKQ 550

Query: 664 LRQLLFGGKPNSKDDSESLPIERIFKVPN---------TEGVIAEGKKTPS---KFRNIT 711
           L+++L+        + + LP+++  K P           +G+  +G + P    ++R ++
Sbjct: 551 LQEILY--------EKQELPVKK--KTPKGQPSTAEEVLQGLADDGYELPQIIMQYRGLS 600

Query: 712 -LRSIGVD-LPTEMYTATG 728
            L+S   D LP ++  ++G
Sbjct: 601 KLKSTYTDKLPLQVNKSSG 619


>gi|227889520|ref|ZP_04007325.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849998|gb|EEJ60084.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 886

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 165/305 (54%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLE 878
            +GR+H   L   T TGRLS+  PNLQN P    +  +IR+AF+    +  I + DY Q+E
Sbjct: 608  DGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTNEGKQIRKAFVPSTKDGYIFSCDYSQVE 667

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH++  + M +AFK+G D H+ TAM ++ H+ +  E                PL+ 
Sbjct: 668  LRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIF-HLDSPDEV--------------TPLM- 711

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GL+++  +S ++AK  ++ ++ +  ++  + +   K
Sbjct: 712  ------RRHAKAVNFGIVYGISDYGLSKNLGISRKQAKTFIENYFEQYPQIKNYMDDAIK 765

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R + +  T++ R R  P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  
Sbjct: 766  KARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKL 825

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
                L  K++LQVHDE+I + P +  +  K IV E M         L V L  D+    N
Sbjct: 826  DELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAV----KLDVPLIADSNWGHN 881

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 882  WYDAK 886


>gi|452990420|emb|CCQ98373.1| DNA polymerase I [Clostridium ultunense Esp]
          Length = 894

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/311 (34%), Positives = 169/311 (54%), Gaps = 33/311 (10%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADY 874
            V  +  ++H S N   T TGR+S+  PNLQN P   ++   IR+AF+A   N ++V ADY
Sbjct: 613  VDKETNKIHSSFNQTVTNTGRISSTEPNLQNIPIKTEEGRMIRKAFVAEDENYILVDADY 672

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++    +++AF  G D H++TA  ++   ++ V                 
Sbjct: 673  SQIELRVLAHISKDPKLMEAFYHGEDIHTKTAAEVFHIPKDEV----------------T 716

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            PL+       R +AK +NF I YG +  GL++D  +  +EAK+ +D +      V  + E
Sbjct: 717  PLM-------RNRAKAVNFGIVYGISDYGLSKDLNIPRKEAKEYIDNYLKNYGMVKKYME 769

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               K  +   +V T+L R R  P +KS   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 770  GIIKIGKEKGYVETILNRRRYVPELKSRNYNVRSFGERIAMNTPIQGSAADIIKVAMVKV 829

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVD--LSVD 1112
             K    + L  +L+LQVHDE+I+E   +  E  K ++ + M      +N++++D  L VD
Sbjct: 830  FKELNKRNLKSRLILQVHDELIIEAYKDEVEEVKNLIKDIM------ENSIKLDIPLKVD 883

Query: 1113 AKCAQNWYSAK 1123
                 NWY +K
Sbjct: 884  LNTGDNWYESK 894


>gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
 gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
          Length = 893

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/334 (35%), Positives = 174/334 (52%), Gaps = 34/334 (10%)

Query: 790  DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQN 846
            + I  + E   I  L S +I  LP     V+ K GR+H S N   T TGRLS+  PNLQN
Sbjct: 589  EIIPLILEYRKIQKLKSTYIDALP---KMVNPKTGRIHASFNQTGTATGRLSSSDPNLQN 645

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
             P   ++  +IR+A +    N  IV ADY Q+ELRILAHL+  +++L AF+ G D H+ T
Sbjct: 646  LPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLT 705

Query: 906  AMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            A  ++                    KP     ++     RR  KM+NFSI YG TP GL+
Sbjct: 706  ASRIF------------------NVKP-----EEVTEEMRRAGKMVNFSIIYGVTPYGLS 742

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
                V V+EA+K +  ++    +V  + +    E++   +V TL GR R  P + +  R+
Sbjct: 743  VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRN 802

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAE 1085
             +   ER AINTP+QG+AAD+   AM+EI +  + +++  K+++QVHDE++ E P E   
Sbjct: 803  TQAEGERIAINTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPDEE-- 860

Query: 1086 VAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
              K  +VE +         L V L VD    + W
Sbjct: 861  --KDALVELVKDRMMNVVKLSVPLEVDVTIGKTW 892


>gi|422452104|ref|ZP_16528805.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2]
 gi|422501053|ref|ZP_16577307.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2]
 gi|313827841|gb|EFS65555.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2]
 gi|315108218|gb|EFT80194.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2]
          Length = 892

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 166/304 (54%), Gaps = 29/304 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 614  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 673

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 674  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 710

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 711  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 771  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 830

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
                L  ++LLQVHDE+ILE      E  + IV   M        +L V L+V     ++
Sbjct: 831  AEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLSVPLTVSIGVGRS 886

Query: 1119 WYSA 1122
            W+ A
Sbjct: 887  WFDA 890


>gi|307704639|ref|ZP_07641540.1| DNA polymerase I [Streptococcus mitis SK597]
 gi|307621792|gb|EFO00828.1| DNA polymerase I [Streptococcus mitis SK597]
          Length = 877

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/350 (34%), Positives = 189/350 (54%), Gaps = 44/350 (12%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPVRLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P     +D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----EDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDE 1074
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K   L E G+  K+LLQVHDE
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKA--LVEGGYQTKMLLQVHDE 832

Query: 1075 VILEGP-SESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            ++LE P SE AE+ K +V + M +       L V L  D      WY AK
Sbjct: 833  IVLEVPKSELAEM-KKLVKQTMEEAI----QLSVPLIADENEGATWYEAK 877


>gi|392948606|ref|ZP_10314213.1| DNA polymerase I [Lactobacillus pentosus KCA1]
 gi|392436168|gb|EIW14085.1| DNA polymerase I [Lactobacillus pentosus KCA1]
          Length = 882

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 184/336 (54%), Gaps = 33/336 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            ++ + +   I  + S +++ L  + +   + +VH   L   T+TGRLS+  PNLQN P  
Sbjct: 576  VANILQYRQISKIQSTYVVGLLDA-IHSTDQKVHTRYLQTLTQTGRLSSVDPNLQNIPVR 634

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  KIRQAF+ +  G  +  +DY Q+ELR+LAH+   ++M  AFK G D H+ TAM +
Sbjct: 635  LEEGRKIRQAFVPSHDGWQIFSSDYSQIELRVLAHITGDENMQAAFKEGDDIHAATAMRI 694

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            + ++++A            ED  P         + RR+AK +NF I YG +  GL+++  
Sbjct: 695  F-NLKSA------------EDVTP---------NIRRQAKAVNFGIVYGISDYGLSQNIG 732

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            +S ++A+  +D ++ E   V  + +   K ++   +V T+  R R  P I S + +QR+ 
Sbjct: 733  ISRKQARSFIDAYFKEYPGVKQYMDDIVKSAKEQGYVETISHRRRYLPDINSKSFNQRSF 792

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEVILEGPSESAEVA 1087
             ER A+NTP+QGSAAD+   AM+++   A LK+ G K  +LLQVHDE+I E P E   V 
Sbjct: 793  AERTAMNTPIQGSAADIIKIAMIKM--QAELKKAGLKATMLLQVHDELIFEAPKEEIPVL 850

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + +V   M    +    L V L V++     WY AK
Sbjct: 851  EKLVPSVM----DSAVKLAVPLKVESHYGDTWYDAK 882


>gi|385826323|ref|YP_005862665.1| DNA polymerase I [Lactobacillus johnsonii DPC 6026]
 gi|329667767|gb|AEB93715.1| DNA polymerase I [Lactobacillus johnsonii DPC 6026]
          Length = 886

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 165/305 (54%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLE 878
            +GR+H   L   T TGRLS+  PNLQN P   ++  +IR+AF+    +  I + DY Q+E
Sbjct: 608  DGRIHTRYLQTLTTTGRLSSVDPNLQNIPTKTEEGKQIRKAFVPSTKDGYIFSCDYSQVE 667

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH++  + M +AFK+G D H+ TAM ++ H+ +  E                PL+ 
Sbjct: 668  LRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIF-HLDSPDEV--------------TPLM- 711

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GL+++  +S ++AK  ++ ++ +  ++  + +   K
Sbjct: 712  ------RRHAKAVNFGIVYGISDYGLSKNLGISRKQAKTFIENYFEQYPQIKNYMDEAIK 765

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R + +  T++ R R  P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K  
Sbjct: 766  KARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKL 825

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
                L  K++LQVHDE+I + P +     K IV E M         L V L  D+    N
Sbjct: 826  DELHLKTKMVLQVHDELIFDVPKDELNTIKKIVPEVMQSAV----KLDVPLIADSNWGHN 881

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 882  WYDAK 886


>gi|320527462|ref|ZP_08028643.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
 gi|320132175|gb|EFW24724.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
          Length = 876

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 164/305 (53%), Gaps = 28/305 (9%)

Query: 820  KNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            ++G++H   N + T+TGRLS+  PNLQN    ++   +IR+AF+   G  LI +DY Q+E
Sbjct: 599  QDGKIHTIYNQSATQTGRLSSSEPNLQNISVRDEQGKEIRKAFLPENGCVLISSDYHQIE 658

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+AN  S+++AFK G D H++TAM+++   ++ +                     
Sbjct: 659  LRMLAHMANETSLIEAFKEGIDIHTKTAMDVFHKPQDEIT-------------------- 698

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               A +RR AK +NF I YG +  GL+    VS  EA   ++ +Y    ++  + +   K
Sbjct: 699  ---AQDRRSAKTVNFGIVYGISDFGLSEQLGVSRYEAHDFIERYYAAYPKIRIYMDQIVK 755

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            +     +V TL GR R  P I     + R   +RAA+N P+QGSAAD+   AM+ I +  
Sbjct: 756  DCEEKGYVETLCGRRREIPEIHDKNHATREFGKRAAMNAPIQGSAADLIKLAMIHIDQMM 815

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
            +  ++  K++LQVHDE+I   P E  +V   ++ + M        +L+V L+ +     +
Sbjct: 816  KDAKVKSKMILQVHDELIFNVPKEEVDVMTKLINDGMVNAM----HLQVPLTAECSIGSD 871

Query: 1119 WYSAK 1123
            WY AK
Sbjct: 872  WYEAK 876



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 108/295 (36%), Gaps = 84/295 (28%)

Query: 389 HGEVICFSIYSGPEADFGNGKSCIWVDLLDGG-GRDLLNEFAPFFEDPSIKKVWHNYSFD 447
           H  +  F++Y        NGK  +++ L+D     DLL  F+          + H Y FD
Sbjct: 337 HATINGFALY--------NGKQAVYISLVDAKKDSDLLAYFS--------SDMPHKYGFD 380

Query: 448 N----HVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQK 503
                H+ EN GL ++ FH D M  A L DSS           LT   K++         
Sbjct: 381 VKRNLHLAENEGLTLN-FHDDMMLAASLVDSS-----------LTTTAKIIER------- 421

Query: 504 DMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDS 563
                    GF   +S +D++G+                P +     + E    Y+   +
Sbjct: 422 --------YGFENTVSYEDVYGK----------------PTKPNLIIDEEKQCMYACAFA 457

Query: 564 INTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREY 623
            N  +LY  +  KL E  +K++            Y E   P   +L  ME EG+  D + 
Sbjct: 458 RNIFRLYAEITPKLQE--YKME----------KLYYEMEMPLTTVLYHMEREGIRCDIDI 505

Query: 624 LSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSK 676
           L  I     A+   A       A      AK  N+ S  QL ++LF   G P  K
Sbjct: 506 LDRIATETMAKISEAQKEIYVLA------AKEFNINSPKQLAEVLFDDLGLPTGK 554


>gi|422527006|ref|ZP_16602996.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1]
 gi|313809768|gb|EFS47489.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1]
          Length = 892

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 166/304 (54%), Gaps = 29/304 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 614  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 673

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 674  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 710

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 711  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 771  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 830

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
                L  ++LLQVHDE+ILE      E  + IV   M        +L V L+V     ++
Sbjct: 831  AEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLSVPLTVSIGVGRS 886

Query: 1119 WYSA 1122
            W+ A
Sbjct: 887  WFDA 890


>gi|309805236|ref|ZP_07699288.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c]
 gi|308165470|gb|EFO67701.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c]
          Length = 439

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 170/305 (55%), Gaps = 28/305 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
            +G++H   L   T TGRLS+  PNLQN P   ++  +IR+AF+    +S L   DY Q+E
Sbjct: 161  DGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVE 220

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+++ K+ML+AFK G D H+ TAM ++  + N  E                PL+ 
Sbjct: 221  LRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFG-LSNLDEV--------------TPLM- 264

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GLA++  +S +EA+  ++ ++ +  ++  + +A  K
Sbjct: 265  ------RRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVK 318

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R   +  T++ R R  P I +   + R+  ER AIN+P+QGSAAD+   AM+++    
Sbjct: 319  LAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSEL 378

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
              ++L  K++LQ+HDE++ + PSE  ++ K +V + M +       L V L  DA    N
Sbjct: 379  EQRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQA----AQLDVPLIADANWGHN 434

Query: 1119 WYSAK 1123
            WY  K
Sbjct: 435  WYEVK 439


>gi|365962488|ref|YP_004944054.1| DNA polymerase I [Propionibacterium acnes TypeIA2 P.acn31]
 gi|365739169|gb|AEW83371.1| DNA polymerase I [Propionibacterium acnes TypeIA2 P.acn31]
          Length = 915

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 166/304 (54%), Gaps = 29/304 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 637  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 696

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 697  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 733

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 734  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 793

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 794  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 853

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
                L  ++LLQVHDE+ILE      E  + IV   M        +L V L+V     ++
Sbjct: 854  AEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLSVPLTVSIGVGRS 909

Query: 1119 WYSA 1122
            W+ A
Sbjct: 910  WFDA 913


>gi|427408412|ref|ZP_18898614.1| DNA polymerase I [Sphingobium yanoikuyae ATCC 51230]
 gi|425712722|gb|EKU75736.1| DNA polymerase I [Sphingobium yanoikuyae ATCC 51230]
          Length = 932

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 172/338 (50%), Gaps = 38/338 (11%)

Query: 793  SALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQ 847
            SA+C +      +  L S +   LQ   ++   GRVH S ++   +TGRLS+  PNLQN 
Sbjct: 624  SAICGLVLEWRQLSKLKSTYTDALQ-QQINRDTGRVHTSYSLTGAQTGRLSSTDPNLQNI 682

Query: 848  PALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
            P   +   +IR AF+A PGN ++ ADY Q+ELR+ AH+A+  ++ DAF+ G D H+RTAM
Sbjct: 683  PIRTEIGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKDAFEQGEDIHNRTAM 742

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
             ++  +                               R +AK +NF+I YG +  GLA  
Sbjct: 743  ELFGEVNR---------------------------DTRGRAKTINFAILYGISRWGLAGR 775

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
             ++S EEA+  +  +Y     +  +     +++R +    TL GR   FP IK+  + +R
Sbjct: 776  LEISAEEAQDMISRYYERFPGISVYINETLEKARANGFTETLFGRKTWFPRIKAPVQHER 835

Query: 1028 NHIERAAINTPVQGSAADV---AMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESA 1084
               ERAAIN P+QG++AD+   AM  M    + A L  +  ++LLQVHDE++ E P    
Sbjct: 836  QGAERAAINAPIQGTSADIIKRAMARMGPALEAAGLPRV--RMLLQVHDELVFELPEADV 893

Query: 1085 EVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSA 1122
            E A  ++ + M        +L V L V+     +W +A
Sbjct: 894  EAASKVIRQVMESAAEPMVSLSVPLGVEIGIGPSWGAA 931


>gi|409387702|ref|ZP_11239882.1| DNA polymerase I [Lactococcus raffinolactis 4877]
 gi|399205259|emb|CCK20797.1| DNA polymerase I [Lactococcus raffinolactis 4877]
          Length = 871

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 185/346 (53%), Gaps = 35/346 (10%)

Query: 782  EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSAR 840
            EQ A +A   +  + +   I  + S ++  L G  ++  +G++H   +   T+TGRLS+ 
Sbjct: 557  EQLAPQAP-IVDKILKYRQISKIQSTYVTGLLGEIMA--DGKIHTRYIQDLTQTGRLSSV 613

Query: 841  RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGG 899
            +PNLQN P    +  KIR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF  G 
Sbjct: 614  QPNLQNIPVRLAEGRKIRKAFLPEKSDSVLLSSDYSQIELRVLAHISGDEHLIAAFNDGA 673

Query: 900  DFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGK 959
            D H+ TAM ++                 G +KP     +D   ++RR AK +NF + YG 
Sbjct: 674  DIHTATAMRVF-----------------GIEKP-----EDVTPNDRRNAKAVNFGVVYGI 711

Query: 960  TPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAI 1019
            +  GL+ +  ++ + AK  +D ++    ++  + E   + ++   +V TL  R R  P I
Sbjct: 712  SDFGLSNNLGITRKAAKTYIDTYFERYPDIKKYMEDIVRSAKDKGYVETLYHRRRNLPEI 771

Query: 1020 KSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQVHDEVIL 1077
             +   S R+  ER AIN+P+QGSAAD+   AM+ + +   L E G+  K+LLQVHDE++L
Sbjct: 772  NARNFSVRSFAERTAINSPIQGSAADILKVAMINLDR--ALMEGGYQTKMLLQVHDEIVL 829

Query: 1078 EGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + P +  +  K +V   M         L+V L VD    + WY AK
Sbjct: 830  DVPHDELDTIKKLVKTTMEDAI----ELKVPLLVDENSGKTWYEAK 871


>gi|357236184|ref|ZP_09123527.1| putative DNA-directed DNA polymerase [Streptococcus criceti HS-6]
 gi|356884166|gb|EHI74366.1| putative DNA-directed DNA polymerase [Streptococcus criceti HS-6]
          Length = 877

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 175/335 (52%), Gaps = 32/335 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +++ LQ  +    +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 572  VAKILEYRQIAKLQSTYVVGLQ--DFIMDDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 629

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF     +S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 630  LEQGRL-IRKAFTPEWEDSVLLSSDYSQIELRVLAHISGDEHLIAAFKNGEDIHTATAMR 688

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++   R              ED  P         ++RR AK +NF + YG +  GL+++ 
Sbjct: 689  VFNIAR-------------PEDVTP---------NDRRNAKAVNFGVVYGISDYGLSQNL 726

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  +D ++     +  + E   +E+R   +  TL  R R  P I S   + RN
Sbjct: 727  GISRKAAKHYIDTYFERFPGIKNYMERVVREARDKGYAETLFKRRRMLPDINSRNFNIRN 786

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAK 1088
              ER AIN+P+QGSAAD+   AM+ + +         K+LLQVHDE++LE P+E     K
Sbjct: 787  FAERTAINSPIQGSAADILKIAMINLDQALEAGGFKTKMLLQVHDEIVLEVPNEELVAIK 846

Query: 1089 AIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
             +V E M         L V L  D    + WY AK
Sbjct: 847  QLVKETMESAI----ELAVPLLADENTGKTWYEAK 877


>gi|422437818|ref|ZP_16514662.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1]
 gi|422493044|ref|ZP_16569344.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1]
 gi|422515990|ref|ZP_16592099.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2]
 gi|422524659|ref|ZP_16600668.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2]
 gi|422532628|ref|ZP_16608574.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1]
 gi|422537626|ref|ZP_16613514.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1]
 gi|422545688|ref|ZP_16621518.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1]
 gi|313791768|gb|EFS39879.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1]
 gi|313802145|gb|EFS43377.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2]
 gi|313838477|gb|EFS76191.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1]
 gi|314963066|gb|EFT07166.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1]
 gi|315077530|gb|EFT49588.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2]
 gi|315080314|gb|EFT52290.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1]
 gi|327452882|gb|EGE99536.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1]
          Length = 892

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 166/304 (54%), Gaps = 29/304 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 614  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 673

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 674  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 710

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 711  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 771  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 830

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
                L  ++LLQVHDE+ILE      E  + IV   M        +L V L+V     ++
Sbjct: 831  AEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLSVPLTVSIGVGRS 886

Query: 1119 WYSA 1122
            W+ A
Sbjct: 887  WFDA 890


>gi|392961136|ref|ZP_10326599.1| DNA polymerase I [Pelosinus fermentans DSM 17108]
 gi|421055126|ref|ZP_15518090.1| DNA polymerase I [Pelosinus fermentans B4]
 gi|421058994|ref|ZP_15521627.1| DNA polymerase I [Pelosinus fermentans B3]
 gi|421067087|ref|ZP_15528602.1| DNA polymerase I [Pelosinus fermentans A12]
 gi|421072006|ref|ZP_15533119.1| DNA polymerase I [Pelosinus fermentans A11]
 gi|392440229|gb|EIW17917.1| DNA polymerase I [Pelosinus fermentans B4]
 gi|392446594|gb|EIW23879.1| DNA polymerase I [Pelosinus fermentans A11]
 gi|392450875|gb|EIW27882.1| DNA polymerase I [Pelosinus fermentans A12]
 gi|392454387|gb|EIW31224.1| DNA polymerase I [Pelosinus fermentans DSM 17108]
 gi|392459733|gb|EIW36116.1| DNA polymerase I [Pelosinus fermentans B3]
          Length = 874

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 169/309 (54%), Gaps = 29/309 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADY 874
            +S   GR+H + N + T TGRLS+  PNLQN P   +   KIR+ FI   G + L+ ADY
Sbjct: 593  ISPATGRIHTTFNQMVTATGRLSSSEPNLQNIPIRTEIGKKIRELFIPGAGYDYLMSADY 652

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LA ++   +++++F    D H+RTA  ++                       V
Sbjct: 653  SQIELRVLADMSGDANLIESFDKEQDVHTRTAAEVFE----------------------V 690

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            P+ ++  +  R +AK +NF I YG +  GL+RD  VS +EA + ++ ++ +   V  + +
Sbjct: 691  PM-EEVTSELRSRAKAVNFGIVYGISDYGLSRDTGVSRKEAGRYIENYFTKYNGVKAFMD 749

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
                 +    +V TLLGR R  P I S   +QR+  ER A+NTP+QG+AAD+   AM+++
Sbjct: 750  KSVGAAHQQGYVTTLLGRRRYLPDINSKNFNQRSFAERTAMNTPIQGTAADIIKKAMVDV 809

Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
             +  + ++L  ++LLQVHDE++LE P    E    IV E M +       L+V L VD K
Sbjct: 810  YRALQKEKLKSRILLQVHDELVLEVPLGEVEQVSKIVKEAMEQSV----ALKVPLVVDVK 865

Query: 1115 CAQNWYSAK 1123
              +NW  AK
Sbjct: 866  IGKNWADAK 874


>gi|335052215|ref|ZP_08545107.1| DNA-directed DNA polymerase [Propionibacterium sp. 409-HC1]
 gi|342212065|ref|ZP_08704790.1| DNA-directed DNA polymerase [Propionibacterium sp. CC003-HC2]
 gi|333764301|gb|EGL41698.1| DNA-directed DNA polymerase [Propionibacterium sp. 409-HC1]
 gi|340767609|gb|EGR90134.1| DNA-directed DNA polymerase [Propionibacterium sp. CC003-HC2]
          Length = 908

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 166/304 (54%), Gaps = 29/304 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 630  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 689

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 690  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 726

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 727  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 786

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 787  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 846

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
                L  ++LLQVHDE+ILE      E  + IV   M        +L V L+V     ++
Sbjct: 847  AEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLSVPLTVSIGVGRS 902

Query: 1119 WYSA 1122
            W+ A
Sbjct: 903  WFDA 906


>gi|422385157|ref|ZP_16465292.1| DNA polymerase I [Propionibacterium acnes HL096PA3]
 gi|422388227|ref|ZP_16468330.1| DNA polymerase I [Propionibacterium acnes HL096PA2]
 gi|422393357|ref|ZP_16473410.1| DNA polymerase I [Propionibacterium acnes HL099PA1]
 gi|422424225|ref|ZP_16501175.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1]
 gi|422428343|ref|ZP_16505254.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1]
 gi|422431261|ref|ZP_16508140.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2]
 gi|422435480|ref|ZP_16512337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2]
 gi|422443296|ref|ZP_16520094.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1]
 gi|422445458|ref|ZP_16522205.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1]
 gi|422448812|ref|ZP_16525537.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3]
 gi|422454695|ref|ZP_16531375.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3]
 gi|422461625|ref|ZP_16538249.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1]
 gi|422474494|ref|ZP_16550958.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1]
 gi|422477818|ref|ZP_16554241.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1]
 gi|422480374|ref|ZP_16556777.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1]
 gi|422482867|ref|ZP_16559256.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1]
 gi|422485657|ref|ZP_16562019.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2]
 gi|422488905|ref|ZP_16565234.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2]
 gi|422490999|ref|ZP_16567314.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1]
 gi|422498772|ref|ZP_16575044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3]
 gi|422502585|ref|ZP_16578830.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2]
 gi|422506532|ref|ZP_16582755.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2]
 gi|422507857|ref|ZP_16584038.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2]
 gi|422510904|ref|ZP_16587050.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1]
 gi|422513118|ref|ZP_16589241.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2]
 gi|422518352|ref|ZP_16594420.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1]
 gi|422521613|ref|ZP_16597643.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1]
 gi|422529447|ref|ZP_16605413.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1]
 gi|422534095|ref|ZP_16610019.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1]
 gi|422539713|ref|ZP_16615586.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1]
 gi|422547564|ref|ZP_16623380.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3]
 gi|422549418|ref|ZP_16625218.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1]
 gi|422552503|ref|ZP_16628294.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3]
 gi|422554455|ref|ZP_16630227.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2]
 gi|422556543|ref|ZP_16632297.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2]
 gi|422561235|ref|ZP_16636922.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1]
 gi|422563326|ref|ZP_16639003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1]
 gi|422568920|ref|ZP_16644538.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2]
 gi|422569688|ref|ZP_16645295.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1]
 gi|422578946|ref|ZP_16654470.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4]
 gi|313764718|gb|EFS36082.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1]
 gi|313772534|gb|EFS38500.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1]
 gi|313807262|gb|EFS45749.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2]
 gi|313815783|gb|EFS53497.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1]
 gi|313818308|gb|EFS56022.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2]
 gi|313820070|gb|EFS57784.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1]
 gi|313823121|gb|EFS60835.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2]
 gi|313825602|gb|EFS63316.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1]
 gi|313830677|gb|EFS68391.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1]
 gi|313833897|gb|EFS71611.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1]
 gi|314915209|gb|EFS79040.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4]
 gi|314918562|gb|EFS82393.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1]
 gi|314919825|gb|EFS83656.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3]
 gi|314925492|gb|EFS89323.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3]
 gi|314931840|gb|EFS95671.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1]
 gi|314955996|gb|EFT00394.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1]
 gi|314958391|gb|EFT02494.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1]
 gi|314960256|gb|EFT04358.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2]
 gi|314973679|gb|EFT17775.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1]
 gi|314976272|gb|EFT20367.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1]
 gi|314978243|gb|EFT22337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2]
 gi|314983518|gb|EFT27610.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1]
 gi|314987707|gb|EFT31798.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2]
 gi|314990186|gb|EFT34277.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3]
 gi|315084573|gb|EFT56549.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2]
 gi|315085909|gb|EFT57885.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3]
 gi|315088673|gb|EFT60649.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1]
 gi|315096299|gb|EFT68275.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1]
 gi|315101027|gb|EFT73003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1]
 gi|327325935|gb|EGE67725.1| DNA polymerase I [Propionibacterium acnes HL096PA2]
 gi|327332192|gb|EGE73929.1| DNA polymerase I [Propionibacterium acnes HL096PA3]
 gi|327442814|gb|EGE89468.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2]
 gi|327446185|gb|EGE92839.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2]
 gi|327447832|gb|EGE94486.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1]
 gi|327451036|gb|EGE97690.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3]
 gi|327453611|gb|EGF00266.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2]
 gi|328753069|gb|EGF66685.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1]
 gi|328753724|gb|EGF67340.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1]
 gi|328759186|gb|EGF72802.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2]
 gi|328760568|gb|EGF74136.1| DNA polymerase I [Propionibacterium acnes HL099PA1]
          Length = 892

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 166/304 (54%), Gaps = 29/304 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 614  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 673

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 674  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 710

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 711  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 771  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 830

Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
                L  ++LLQVHDE+ILE      E  + IV   M        +L V L+V     ++
Sbjct: 831  AEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLSVPLTVSIGVGRS 886

Query: 1119 WYSA 1122
            W+ A
Sbjct: 887  WFDA 890


>gi|334881706|emb|CCB82606.1| DNA polymerase I [Lactobacillus pentosus MP-10]
          Length = 882

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 184/336 (54%), Gaps = 33/336 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            ++ + +   I  + S +++ L  + +   + +VH   L   T+TGRLS+  PNLQN P  
Sbjct: 576  VANILQYRQISKIQSTYVVGLLDA-IHSTDQKVHTRYLQTLTQTGRLSSVDPNLQNIPVR 634

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  KIRQAF+ +  G  +  +DY Q+ELR+LAH+   ++M  AFK G D H+ TAM +
Sbjct: 635  LEEGRKIRQAFVPSHDGWQIFSSDYSQIELRVLAHITGDENMQAAFKEGDDIHAATAMRI 694

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            + ++++A            ED  P         + RR+AK +NF I YG +  GL+++  
Sbjct: 695  F-NLKSA------------EDVTP---------NIRRQAKAVNFGIVYGISDYGLSQNIG 732

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            +S ++A+  +D ++ E   V  + +   K ++   +V T+  R R  P I S + +QR+ 
Sbjct: 733  ISRKQARSFIDAYFKEYPGVKQYMDDIVKSAKEQGYVETISHRRRYLPDINSKSFNQRSF 792

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQVHDEVILEGPSESAEVA 1087
             ER A+NTP+QGSAAD+   AM+++   A LK+ G K  +LLQVHDE+I E P E   V 
Sbjct: 793  AERTAMNTPIQGSAADIIKIAMIKM--QAELKKAGLKATMLLQVHDELIFEAPKEEIPVL 850

Query: 1088 KAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
            + +V   M    +    L V L V++     WY AK
Sbjct: 851  EKLVPSVM----DSAVKLAVPLKVESHYGDTWYDAK 882


>gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103]
 gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103]
          Length = 928

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/315 (36%), Positives = 164/315 (52%), Gaps = 32/315 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+  PNLQN P    +  +IRQAF+A  GN 
Sbjct: 643  LPLMINPVSG---RVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNR 699

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +LDAF  G D H  TA  ++                  
Sbjct: 700  IVAADYSQIELRIMAHLSQDKGLLDAFSQGEDIHRATASEVF------------------ 741

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                 VPL K     +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 742  ----GVPLSK-VTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 796

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++ +  + +V TL GR    P IKS    +R   ERAAIN P+QG+AAD+  
Sbjct: 797  VLRYMENTRQLAASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIK 856

Query: 1049 CAMLEISK-NARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRV 1107
             AM+ +     +  +   ++++QVHDE++ E  +E+ + A   +   M     G   L V
Sbjct: 857  RAMIALDDWLQKQTDDAVRMIMQVHDELVFEIKAEAVDEASKQIRALM----EGSMALDV 912

Query: 1108 DLSVDAKCAQNWYSA 1122
             L V+     NW  A
Sbjct: 913  PLLVEVGVGDNWDQA 927



 Score = 43.9 bits (102), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 108/257 (42%), Gaps = 60/257 (23%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L +  P  EDP   KV  N  +D  VL+NY ++++G   DTM  + + +S     G + 
Sbjct: 400 VLAQLKPLLEDPDASKVGQNLKYDRGVLKNYDIELAGIKYDTMLESYILNS---VVGKHD 456

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L+   + ++     +++   KG     F  +I++                       
Sbjct: 457 MDSLSA--RWLNHKTITFEEIAGKGKNQLTF-NQIAL----------------------- 490

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
                    E    Y+A D+  TL+L+       L+M  +L+ +  P K     +++   
Sbjct: 491 ---------EQAAHYAAEDADVTLQLH-------LKMWPELEKEAGPKK----VFEQIEM 530

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASK-HCPDAKYMNVGSDT 662
           P  +++ ++E  G+L+D+  L++  K          +R  +   K H    +  N+ S  
Sbjct: 531 PLLKVISRVERNGVLIDQAILAQHSK-------ELTSRLAELELKAHELAGEPFNLSSTK 583

Query: 663 QLRQLLF---GGKPNSK 676
           QL+ +LF   G KP  K
Sbjct: 584 QLQVILFEKQGIKPTKK 600


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.315    0.130    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,563,551,897
Number of Sequences: 23463169
Number of extensions: 747751436
Number of successful extensions: 1967100
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5280
Number of HSP's successfully gapped in prelim test: 508
Number of HSP's that attempted gapping in prelim test: 1943848
Number of HSP's gapped (non-prelim): 12581
length of query: 1123
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 969
effective length of database: 8,745,867,341
effective search space: 8474745453429
effective search space used: 8474745453429
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 83 (36.6 bits)