BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001207
(1123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19821|DPO1_THEAQ DNA polymerase I, thermostable OS=Thermus aquaticus GN=polA PE=1 SV=1
Length = 832
Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 122/345 (35%), Positives = 181/345 (52%), Gaps = 31/345 (8%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L S +I PL + + GR+H N T TGRLS
Sbjct: 517 AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 575
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AFIA G L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 576 SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 635
Query: 899 GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
D H+ TA M+ R AV+ PL+ RR AK +NF + YG
Sbjct: 636 RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 672
Query: 959 KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
+ L+++ + EEA+ ++ ++ +V W E +E R +V TL GR R P
Sbjct: 673 MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 732
Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
+++ +S R ER A N PVQG+AAD+ AM+++ RL+E+G ++LLQVHDE++LE
Sbjct: 733 LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLEEMGARMLLQVHDELVLE 790
Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
P E AE + E M G L V L V+ ++W SAK
Sbjct: 791 APKERAEAVARLAKEVM----EGVYPLAVPLEVEVGIGEDWLSAK 831
>sp|Q9CDS1|DPO1_LACLA DNA polymerase I OS=Lactococcus lactis subsp. lactis (strain IL1403)
GN=polA PE=3 SV=1
Length = 877
Score = 193 bits (490), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 115/345 (33%), Positives = 183/345 (53%), Gaps = 35/345 (10%)
Query: 788 ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
A D + L + + + I + I +Q + V G +G++H + T+TGRLS
Sbjct: 559 AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 618
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P ++ KIR+AF+ + L+ +DY Q+ELR+LAH++ + ++DAFK G
Sbjct: 619 SVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHG 678
Query: 899 GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
D H+ TAM ++ +E + D A++RR AK +NF + YG
Sbjct: 679 ADIHTSTAMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 716
Query: 959 KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
+ GLAR+ ++ ++AK ++ ++ + T+ E +E+R V T+ R R+ P
Sbjct: 717 ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 776
Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
I + + R ER AIN+P+QGSAAD+ AM+ + K ++ KLLLQVHDE+IL+
Sbjct: 777 INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALSARDFKSKLLLQVHDEIILD 836
Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
P E + K +V + M + L V L VD + WY AK
Sbjct: 837 VPLEELDEIKVLVKQTMEEAI----ELAVPLKVDENTGKTWYEAK 877
>sp|O32801|DPO1_LACLM DNA polymerase I OS=Lactococcus lactis subsp. cremoris (strain
MG1363) GN=polA PE=3 SV=2
Length = 877
Score = 193 bits (490), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 117/345 (33%), Positives = 184/345 (53%), Gaps = 35/345 (10%)
Query: 788 ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
A D + L + + + I + I +Q + V G +G++H + T+TGRLS
Sbjct: 559 AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 618
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P ++ KIR+AF+ + L+ +DY Q+ELR+LAH++ + ++DAFK G
Sbjct: 619 SVDPNLQNIPVRLEEGRKIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHG 678
Query: 899 GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
D H+ TAM ++ +E + D A++RR AK +NF + YG
Sbjct: 679 ADIHTSTAMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 716
Query: 959 KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
+ GLAR+ ++ ++AK ++ ++ + T+ E +E+R V T+ R R+ P
Sbjct: 717 ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 776
Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
I + + R ER AIN+P+QGSAAD+ AM+ + K ++ KLLLQVHDE+IL+
Sbjct: 777 INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALTERQSKSKLLLQVHDEIILD 836
Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
P E E KA+V + M + L V L VD + WY AK
Sbjct: 837 VPLEELEDIKALVKQTMEEAI----ELAVPLKVDDNTGKTWYEAK 877
>sp|P30313|DPO1F_THETH DNA polymerase I, thermostable OS=Thermus thermophilus GN=polA PE=1
SV=1
Length = 831
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 122/345 (35%), Positives = 180/345 (52%), Gaps = 31/345 (8%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L + +I PL + V K GR+H N T TGRLS
Sbjct: 516 AVLEALREAHPIVDRILQYRELTKLKNTYIDPLP-ALVHPKTGRLHTRFNQTATATGRLS 574
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G L+V DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 575 SSDPNLQNIPVRTPLGQRIRRAFVAEEGWVLVVLDYSQIELRVLAHLSGDENLIRVFQEG 634
Query: 899 GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
D H++TA M+ V+ PL+ RR AK +NF + YG
Sbjct: 635 RDIHTQTASWMFGVSPEGVD----------------PLM-------RRAAKTINFGVLYG 671
Query: 959 KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
+ L+ + + EEA ++ ++ +V W E +E R +V TL GR R P
Sbjct: 672 MSAHRLSGELSIPYEEAVAFIERYFQSYPKVRAWIEGTLEEGRRRGYVETLFGRRRYVPD 731
Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
+ + +S R ER A N PVQG+AAD+ AM+ + RL+ELG ++LLQVHDE++LE
Sbjct: 732 LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVRLFP--RLQELGARMLLQVHDELVLE 789
Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
P + AE A+ E M G L+V L V+ ++W SAK
Sbjct: 790 APKDRAERVAALAKEVM----EGVWPLQVPLEVEVGLGEDWLSAK 830
>sp|P52026|DPO1_GEOSE DNA polymerase I OS=Geobacillus stearothermophilus GN=polA PE=1 SV=2
Length = 876
Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 116/305 (38%), Positives = 171/305 (56%), Gaps = 29/305 (9%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLE 878
G+VH N T+TGRLS+ PNLQN P ++ KIRQAF+ + LI ADY Q+E
Sbjct: 599 TGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIE 658
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
LR+LAH+A ++++AF+ G D H++TAM+++ H+ +
Sbjct: 659 LRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIF-HVSE----------------------E 695
Query: 939 DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
D A+ RR+AK +NF I YG + GLA++ ++ +EA + ++ ++ V + + +
Sbjct: 696 DVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQ 755
Query: 999 ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
E++ +V TLL R R P I S + R+ ER A+NTP+QGSAAD+ AM+++S
Sbjct: 756 EAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDLSVRL 815
Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
R + L +LLLQVHDE+ILE P E E +V E M + LRV L VD
Sbjct: 816 REERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQAV----TLRVPLKVDYHYGPT 871
Query: 1119 WYSAK 1123
WY AK
Sbjct: 872 WYDAK 876
>sp|P52028|DPO1T_THET8 DNA polymerase I, thermostable OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=polA PE=3 SV=2
Length = 834
Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 182/345 (52%), Gaps = 31/345 (8%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L + ++ PL S V + GR+H N T TGRLS
Sbjct: 519 AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G +L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 578 SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637
Query: 899 GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
D H++TA M+ AV+ PL+ RR AK +NF + YG
Sbjct: 638 KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 674
Query: 959 KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
+ L+++ + EEA ++ ++ +V W E +E R +V TL GR R P
Sbjct: 675 MSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 734
Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
+ + +S R ER A N PVQG+AAD+ AM+++ RL+E+G ++LLQVHDE++LE
Sbjct: 735 LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLREMGARMLLQVHDELLLE 792
Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
P AE A+ E M K + L V L V+ ++W SAK
Sbjct: 793 APQARAEEVAALAKEAMEKAY----PLAVPLEVEVGMGEDWLSAK 833
>sp|O52225|DPO1_THEFI DNA polymerase I, thermostable OS=Thermus filiformis GN=polA PE=1
SV=1
Length = 833
Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 128/349 (36%), Positives = 180/349 (51%), Gaps = 35/349 (10%)
Query: 780 ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
+T Q A EA + E+ + L S ++ PL V + GR+H N T T
Sbjct: 513 STAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLP-RLVHPRTGRLHTRFNQTATAT 571
Query: 835 GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
GRLS+ PNLQN P +IR+AF+A G L+ ADY Q+ELR+LAHL+ +++
Sbjct: 572 GRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRV 631
Query: 895 FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
F+ G D H+ TA M+ G D P L D RR AK +NF
Sbjct: 632 FREGKDIHTETAAWMF-----------------GLD----PALVDP--KMRRAAKTVNFG 668
Query: 955 IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
+ YG + L+++ + +EA+ ++ ++ +V W E +E R +V TL GR R
Sbjct: 669 VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728
Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDE 1074
P + S RS R ER A N PVQG+AAD+ AM+++ RLK LG LLLQVHDE
Sbjct: 729 YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLF--PRLKPLGAHLLLQVHDE 786
Query: 1075 VILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
++LE P + AE AKA+V E M + L V L V+ ++W AK
Sbjct: 787 LVLEVPEDRAEEAKALVKEVMENAY----PLDVPLEVEVGVGRDWLEAK 831
>sp|P80194|DPO1_THECA DNA polymerase I, thermostable OS=Thermus caldophilus GN=polA PE=1
SV=2
Length = 834
Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 181/345 (52%), Gaps = 31/345 (8%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L + ++ PL S V GR+H N T TGRLS
Sbjct: 519 AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPNTGRLHTRFNQTATATGRLS 577
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G +L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 578 SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637
Query: 899 GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
D H++TA M+ AV+ PL+ RR AK +NF + YG
Sbjct: 638 KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 674
Query: 959 KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
+ L+++ + EEA ++ ++ +V W E +E R +V TL GR R P
Sbjct: 675 MSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 734
Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE 1078
+ + +S R ER A N PVQG+AAD+ AM+++ RL+E+G ++LLQVHDE++LE
Sbjct: 735 LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLREMGARMLLQVHDELLLE 792
Query: 1079 GPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
P AE A+ E M K + L V L V+ ++W SAK
Sbjct: 793 APQAGAEEVAALAKEAMEKAY----PLAVPLEVEVGMGEDWLSAK 833
>sp|Q9S1G2|DPO1_RHILE DNA polymerase I OS=Rhizobium leguminosarum GN=polA PE=3 SV=1
Length = 1016
Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 159/302 (52%), Gaps = 30/302 (9%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 736 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 795
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
LAH+A + AF+ G D H+ TA M+ G + GE
Sbjct: 796 LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 834
Query: 942 ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
RR+AK +NF I YG + GLA + EA + ++ + + E+RK +R
Sbjct: 835 --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 892
Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
+V T+ GR +P I+S S R ERAAIN P+QGSAADV AM++I L
Sbjct: 893 DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPA--LV 950
Query: 1062 ELGW----KLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQ 1117
E+G ++LLQVHDE+I E + E A ++V M +RV L VDA+ A
Sbjct: 951 EVGLADRVRMLLQVHDELIFEVEDQDVEKAMPVIVSVMENATMPALEMRVPLRVDARAAT 1010
Query: 1118 NW 1119
NW
Sbjct: 1011 NW 1012
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 102/256 (39%), Gaps = 71/256 (27%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
RD L ED S+ KV N +D +L+ YG++ F DTM ++ + D+ G
Sbjct: 482 RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETRSFD-DTMLISYVLDAG---TGA 537
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
+ ++ L+ E F+G I KD+ G +GK +
Sbjct: 538 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 565
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ ++ R Y+A D+ TL+L+ LK +L + Y+
Sbjct: 566 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 608
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
+P +L +ME G+ VDR+ LS + + AR E E V ++
Sbjct: 609 RLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERF--------- 659
Query: 655 YMNVGSDTQLRQLLFG 670
N+GS QL +LFG
Sbjct: 660 --NIGSPKQLGDILFG 673
>sp|Q04957|DPO1_BACCA DNA polymerase I OS=Bacillus caldotenax GN=polA PE=1 SV=1
Length = 877
Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/305 (39%), Positives = 172/305 (56%), Gaps = 33/305 (10%)
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
+VH N T+TGRLS+ PNLQN P ++ KIRQAF+ + LI ADY Q+ELR
Sbjct: 602 KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 661
Query: 881 ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
+LAH+A ++++AF+ D H++TAM+++ QV ED +
Sbjct: 662 VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 698
Query: 941 FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
+ RR+AK +NF I YG + GLA++ +S +EA + ++ ++ V + E +E+
Sbjct: 699 TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 758
Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
+ +V TLL R R P I S + R+ ER A+NTP+QGSAAD+ AM+++ NARL
Sbjct: 759 KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 816
Query: 1061 KE--LGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
KE L +LLLQVHDE+ILE P E E +V E M + LRV L VD
Sbjct: 817 KEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV----TLRVPLKVDYHYGST 872
Query: 1119 WYSAK 1123
WY AK
Sbjct: 873 WYDAK 877
>sp|O34996|DPO1_BACSU DNA polymerase I OS=Bacillus subtilis (strain 168) GN=polA PE=3 SV=1
Length = 880
Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/347 (33%), Positives = 182/347 (52%), Gaps = 38/347 (10%)
Query: 788 ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCSLN-INTETGRL 837
+ D + L + I I + I LQ + + G + +VH N T+TGRL
Sbjct: 561 SADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTGRL 620
Query: 838 SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFK 896
S+ PNLQN P ++ KIRQAF+ + LI ADY Q+ELR+LAH++ +++++AF
Sbjct: 621 SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFT 680
Query: 897 AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
D H++TAM+++ ++ V + RR+AK +NF I
Sbjct: 681 NDMDIHTKTAMDVFHVAKDEVTSAM-----------------------RRQAKAVNFGIV 717
Query: 957 YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
YG + GL+++ ++ +EA +D + Q V + E +E++ +V TL+ R R
Sbjct: 718 YGISDYGLSQNLGITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYI 777
Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
P + S + R+ ER A+NTP+QGSAAD+ AM++++ + K+L +LLLQVHDE+I
Sbjct: 778 PELTSRNFNIRSFAERTAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELI 837
Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
E P E E+ + +V E M L V L VD +WY AK
Sbjct: 838 FEAPKEEIEILEKLVPEVMEHAL----ALDVPLKVDFASGPSWYDAK 880
>sp|Q59156|DPO1_CALBD DNA polymerase I OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888
/ DSM 6725 / Z-1320) GN=polA PE=3 SV=2
Length = 850
Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/313 (36%), Positives = 167/313 (53%), Gaps = 30/313 (9%)
Query: 812 LQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
LQ N S GRVH + + T TGRL++ PNLQN P + IR+ F+ G+ LI
Sbjct: 567 LQAINPSS--GRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEGGHVLI 624
Query: 871 VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
ADY Q+ELRILAH++ + ++ AFK D HS+TA ++ G D
Sbjct: 625 DADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVF-----------------GVD 667
Query: 931 KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVL 990
+ D R +AK +NF I YG + GLARD K+S +EA + ++ ++ +V
Sbjct: 668 ------IADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVK 721
Query: 991 TWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCA 1050
+ + K +R + V TL R R IKS R+ R + ER A+N+P+QGSAAD+ A
Sbjct: 722 EYLDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLA 781
Query: 1051 MLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLS 1110
M+++ + + L K++LQVHDE+++E P E ++ K IV M L+V L
Sbjct: 782 MIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKEIVKREMENAV----ALKVPLV 837
Query: 1111 VDAKCAQNWYSAK 1123
V+ K NWY K
Sbjct: 838 VEVKEGLNWYETK 850
>sp|P59199|DPO1_STRPN DNA polymerase I OS=Streptococcus pneumoniae serotype 4 (strain ATCC
BAA-334 / TIGR4) GN=polA PE=3 SV=1
Length = 877
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 116/347 (33%), Positives = 180/347 (51%), Gaps = 38/347 (10%)
Query: 788 ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
A D + L + I I ++ I +Q + V G +G++H + T+TGRLS
Sbjct: 558 AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617
Query: 839 ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
+ PNLQN PA LE+ R IR+AF+ +S++++ DY Q+ELR+LAH++ + ++ AF+
Sbjct: 618 SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676
Query: 897 AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
G D H+ TAM ++ G ++P D A++RR AK +NF +
Sbjct: 677 EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 714
Query: 957 YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
YG + GL+ + +S +EAK +D ++ + + + +E+R +V TL R R
Sbjct: 715 YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774
Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
P I S + R ER AIN+P+QGSAAD+ AM+++ K K+LLQVHDE++
Sbjct: 775 PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIV 834
Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
LE P K +V + M + L V L D WY AK
Sbjct: 835 LEVPKSELVEMKKLVKQTMEEAI----QLSVPLIADENEGATWYEAK 877
>sp|P52027|DPO1_DEIRA DNA polymerase I OS=Deinococcus radiodurans (strain ATCC 13939 / DSM
20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 /
R1 / VKM B-1422) GN=polA PE=3 SV=2
Length = 956
Score = 177 bits (448), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 172/339 (50%), Gaps = 31/339 (9%)
Query: 786 REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL-NINTETGRLSARRPNL 844
R+A I + E +D L ++ P+ + V+ GR+H + TGRLS+ PNL
Sbjct: 648 RDAHPIIPLVLEFRELDKLRGTYLDPIP-NLVNPHTGRLHTTFAQTAVATGRLSSLNPNL 706
Query: 845 QNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSR 904
QN P + +IR+ FIA G +LI ADY Q+ELR+LAH+A+ M AF G D H R
Sbjct: 707 QNIPIRSELGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRR 766
Query: 905 TAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGL 964
TA QVL G D+ V A++RR AK +NF + YG + L
Sbjct: 767 TA-------------AQVL----GLDEATVD------ANQRRAAKTVNFGVLYGMSAHRL 803
Query: 965 ARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTR 1024
+ D + EA +++++ + + R +V TL GR R P + S R
Sbjct: 804 SNDLGIPYAEAATFIEIYFATYPGIRRYINHTLDFGRTHGYVETLYGRRRYVPGLSSRNR 863
Query: 1025 SQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESA 1084
QR ER A N P+QG+AAD+ AM+++ + +L +G ++LLQVHDE+++E P + A
Sbjct: 864 VQREAEERLAYNMPIQGTAADIMKLAMVQL--DPQLDAIGARMLLQVHDELLIEAPLDKA 921
Query: 1085 EVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
E A+ + M L+V L+V+ NW+ K
Sbjct: 922 EQVAALTKKVMENVV----QLKVPLAVEVGTGPNWFDTK 956
>sp|P59200|DPO1_STRR6 DNA polymerase I OS=Streptococcus pneumoniae (strain ATCC BAA-255 /
R6) GN=polA PE=3 SV=1
Length = 877
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/347 (33%), Positives = 180/347 (51%), Gaps = 38/347 (10%)
Query: 788 ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
A D + L + I I ++ I +Q + V G +G++H + T+TGRLS
Sbjct: 558 AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617
Query: 839 ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
+ PNLQN PA LE+ R IR+AF+ +S++++ DY Q+ELR+LAH++ + ++ AF+
Sbjct: 618 SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676
Query: 897 AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
G D H+ TAM ++ G ++P + A++RR AK +NF +
Sbjct: 677 EGADIHTSTAMRVF-----------------GIERP-----DNVTANDRRNAKAVNFGVV 714
Query: 957 YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
YG + GL+ + +S +EAK +D ++ + + + +E+R +V TL R R
Sbjct: 715 YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774
Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVI 1076
P I S + R ER AIN+P+QGSAAD+ AM+++ K K+LLQVHDE++
Sbjct: 775 PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIV 834
Query: 1077 LEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
LE P K +V + M + L V L D WY AK
Sbjct: 835 LEVPKSELVEMKKLVKQTMEEAI----QLSVPLIADENEGATWYEAK 877
>sp|Q9HT80|DPO1_PSEAE DNA polymerase I OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1
/ 1C / PRS 101 / LMG 12228) GN=polA PE=3 SV=1
Length = 913
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 154/305 (50%), Gaps = 28/305 (9%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ + GR+H S + TGRLS+ PNLQN P + +IRQAF+A G L+ ADY
Sbjct: 632 QINPRTGRIHTSYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADY 691
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
Q+ELRI+AHLA +LDAF+ D H TA ++ V
Sbjct: 692 SQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVFG----------------------V 729
Query: 935 PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
PL +D +RR AK +NF + YG + GLA+ V +EA+ +D ++ VL + E
Sbjct: 730 PL-EDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEAQAYIDRYFARYPGVLAYME 788
Query: 995 ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
+ ++ V TL GR P I S + R ER AIN P+QG+AAD+ AM+ +
Sbjct: 789 RTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAINAPMQGTAADIMKRAMVAV 848
Query: 1055 SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAK 1114
+ L +++LQVHDE++LE + E V E + +G L V L V+A
Sbjct: 849 DNWLQESGLDARVILQVHDELVLEVREDLVEQ----VCEGIRPLMSGAATLDVPLVVEAG 904
Query: 1115 CAQNW 1119
NW
Sbjct: 905 VGSNW 909
>sp|P43741|DPO1_HAEIN DNA polymerase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=polA PE=3 SV=1
Length = 930
Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 159/304 (52%), Gaps = 29/304 (9%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P ++ IRQAFIA G S++ ADY
Sbjct: 651 VNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRHIRQAFIAREGYSIVAADYS 710
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
Q+ELRI+AHL+ + +++AF G D H TA ++ G L E E
Sbjct: 711 QIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIF---------GVSLDEVTSE------ 755
Query: 936 LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
+RR AK +NF + YG + GL+R +S +A+K +DL++ V +
Sbjct: 756 --------QRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMDLYFQRYPSVQQFMTD 807
Query: 996 RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
+++++ +V TL GR P I S +R ER AIN P+QG+AAD+ AM+++
Sbjct: 808 IREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKLD 867
Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
+ R + ++++QVHDE++ E SE A E + + L V L V+
Sbjct: 868 EVIR-HDPDIEMIMQVHDELVFEVRSEKV----AFFREQIKQHMEAAAELVVPLIVEVGV 922
Query: 1116 AQNW 1119
QNW
Sbjct: 923 GQNW 926
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/383 (21%), Positives = 159/383 (41%), Gaps = 97/383 (25%)
Query: 299 SFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMV---VDNVSAAK 355
S ++ ++ K + + T Q++ A EN + K++I R+K + + + ++ ++AAK
Sbjct: 297 SITQTTEQPVKMNQYKATSQDQSAVEN--TPKIQIDRTKYETLLTQADLTRWIEKLNAAK 354
Query: 356 KVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVD 415
+ A DTE +D V I F++ +G A + +D
Sbjct: 355 LI-------------AVDTETDSLDYMSANLVG----ISFALENGEAAYL-----PLQLD 392
Query: 416 LLDGGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
LD L P E+P+I K+ N FD + +G+++ G DTM ++
Sbjct: 393 YLDAPKTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYT 452
Query: 472 WDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
+S+ G ++++ L ++ + + A++ KG + +++ I
Sbjct: 453 LNST----GRHNMDDLA--KRYLGHETIAFESLAGKGKS------QLTFNQI-------- 492
Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVP 590
P+E+ Y+A D+ T+KL ++L W KL +P
Sbjct: 493 -----------PLEQ--------ATEYAAEDADVTMKLQQAL--------WLKLQEEP-- 523
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWA 646
++ + Y+ P +L +ME G+L+D + L +EI A ++ A +A
Sbjct: 524 --TLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQA------YA 575
Query: 647 SKHCPDAKYMNVGSDTQLRQLLF 669
P N+ S QL+++LF
Sbjct: 576 LAGQP----FNLASTKQLQEILF 594
>sp|P0A550|DPO1_MYCTU DNA polymerase I OS=Mycobacterium tuberculosis GN=polA PE=3 SV=1
Length = 904
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 158/304 (51%), Gaps = 29/304 (9%)
Query: 821 NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
+GR+H + N TGRLS+ PNLQN P +IR AF+ G + L+ ADY Q+E
Sbjct: 626 DGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIE 685
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
+RI+AHL+ + +++AF G D HS A + G + E GE
Sbjct: 686 MRIMAHLSGDEGLIEAFNTGEDLHSFVASRAF---------GVPIDEVTGE--------- 727
Query: 939 DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
RR+ K +++ +AYG + GL++ K+S EEA + +D ++ V + A +
Sbjct: 728 -----LRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAYFARFGGVRDYLRAVVE 782
Query: 999 ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
+R D + T+LGR R P + S R R ERAA+N P+QGSAAD+ AM+++ K
Sbjct: 783 RARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIQVDKAL 842
Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
+L ++LLQVHDE++ E E +A+V + M G L V L V ++
Sbjct: 843 NEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKM----GGAYPLDVPLEVSVGYGRS 898
Query: 1119 WYSA 1122
W +A
Sbjct: 899 WDAA 902
>sp|P0A551|DPO1_MYCBO DNA polymerase I OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=polA PE=3 SV=1
Length = 904
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 158/304 (51%), Gaps = 29/304 (9%)
Query: 821 NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
+GR+H + N TGRLS+ PNLQN P +IR AF+ G + L+ ADY Q+E
Sbjct: 626 DGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIE 685
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
+RI+AHL+ + +++AF G D HS A + G + E GE
Sbjct: 686 MRIMAHLSGDEGLIEAFNTGEDLHSFVASRAF---------GVPIDEVTGE--------- 727
Query: 939 DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
RR+ K +++ +AYG + GL++ K+S EEA + +D ++ V + A +
Sbjct: 728 -----LRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAYFARFGGVRDYLRAVVE 782
Query: 999 ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
+R D + T+LGR R P + S R R ERAA+N P+QGSAAD+ AM+++ K
Sbjct: 783 RARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIQVDKAL 842
Query: 1059 RLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQN 1118
+L ++LLQVHDE++ E E +A+V + M G L V L V ++
Sbjct: 843 NEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKM----GGAYPLDVPLEVSVGYGRS 898
Query: 1119 WYSA 1122
W +A
Sbjct: 899 WDAA 902
>sp|Q1RH76|DPO1_RICBR DNA polymerase I OS=Rickettsia bellii (strain RML369-C) GN=polA PE=3
SV=1
Length = 871
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/312 (33%), Positives = 159/312 (50%), Gaps = 35/312 (11%)
Query: 810 LPLQGSNVSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q N++ R+H + + T GRLS++ PNLQN P + KIRQAF+A G
Sbjct: 589 LPKQIDNITR---RIHTTFLQTSTTTGRLSSQEPNLQNVPIRSGEGNKIRQAFVAEQGYK 645
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
LI ADY Q+ELRIL+H+A+ K++ AF D H++TA ++
Sbjct: 646 LISADYSQIELRILSHIADIKALKQAFINKDDIHTQTACQIF------------------ 687
Query: 929 EDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
L K+ SE RRKAK +NF I YG + GLA+ VS EA + + ++ E +
Sbjct: 688 ------NLQKEELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNTEAAEYIKKYFAEYK 741
Query: 988 EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
V + EA K ++ + +V GR P I + + ERAAIN P+QG+ AD+
Sbjct: 742 GVQEYMEATKSFAQANGYVTDFFGRKCFVPLIND--KRLKQFAERAAINAPIQGTNADII 799
Query: 1048 MCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRV 1107
AM + + ++L +L+LQ+HDE++ E P + E I+ + M N+ V
Sbjct: 800 KIAMTLLDREIEKRKLKTRLVLQIHDELLFEAPIDEIETIMPIIKQIME----NSTNMDV 855
Query: 1108 DLSVDAKCAQNW 1119
+ + + NW
Sbjct: 856 PIITEIRAGNNW 867
>sp|P46835|DPO1_MYCLE DNA polymerase I OS=Mycobacterium leprae (strain TN) GN=polA PE=3
SV=1
Length = 911
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 159/312 (50%), Gaps = 32/312 (10%)
Query: 816 NVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS----LI 870
N +GR+H + N TGRLS+ PNLQN P +IR AF+ N+ L+
Sbjct: 625 NAVAADGRIHTTFNQTIATTGRLSSTEPNLQNIPIRTNAGRQIRDAFVVGSENNGYTELM 684
Query: 871 VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
ADY Q+E+RI+AHL+ + +++AF G D HS A +
Sbjct: 685 TADYSQIEMRIMAHLSRDEGLIEAFHTGEDLHSFVASRAFG------------------- 725
Query: 931 KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVL 990
+P+ +D RR+ K +++ +AYG + GLA K+S EEAK ++ ++ V
Sbjct: 726 ---IPI-EDITPELRRRVKAMSYGLAYGLSAYGLATQLKISTEEAKLQMEQYFARFGGVR 781
Query: 991 TWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCA 1050
+ +++R D + T+LGR R P + S R R ERAA+N P+QGSAAD+ A
Sbjct: 782 DYLMDVVEQARKDGYTSTVLGRRRYLPELDSSNRQIREAAERAALNAPIQGSAADIIKVA 841
Query: 1051 MLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLS 1110
M+ + K+ + +L ++LLQVHDE++ E E +A+V E M + L V L
Sbjct: 842 MIAVDKSLKQAKLASRMLLQVHDELLFEVAIGEREQIEAMVREQMGSAY----PLDVPLE 897
Query: 1111 VDAKCAQNWYSA 1122
V ++W +A
Sbjct: 898 VSVGFGRSWGAA 909
>sp|P74933|DPO1_TREPA DNA polymerase I OS=Treponema pallidum (strain Nichols) GN=polA PE=3
SV=2
Length = 997
Score = 163 bits (413), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 153/296 (51%), Gaps = 24/296 (8%)
Query: 815 SNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ + GRVH S + I T TGRLS+R PNLQN P + KIRQAF A G+ LI AD
Sbjct: 715 AKLADQTGRVHTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAFQATVGHELISAD 774
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
Y Q+EL +LAHL+ +++L+AF+ D H+ TA +I N
Sbjct: 775 YTQIELVVLAHLSQDRNLLNAFRQHIDIHALTA----AYIFNVS---------------- 814
Query: 934 VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
+ D + RR AK +NF I YG + L+ + K+S +EA+ + ++ V +
Sbjct: 815 ---IDDVQPAMRRIAKTINFGIVYGMSAFRLSDELKISQKEAQSFIYRYFETYPGVYAFS 871
Query: 994 EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
+++R +V +L GR R I S +R ER A+NT +Q SAAD+ AM+
Sbjct: 872 TQVAEQTRKTGYVTSLAGRRRYIRTIDSRNTLERARAERMALNTQIQSSAADIVKIAMIA 931
Query: 1054 ISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDL 1109
I + + L +LLLQVHDE+I E P+ + K I+ M LR+ +
Sbjct: 932 IQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVELSIPLRIHV 987
>sp|Q9RAA9|DPO1_RICFE DNA polymerase I OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=polA PE=3 SV=1
Length = 922
Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 106/312 (33%), Positives = 155/312 (49%), Gaps = 35/312 (11%)
Query: 810 LPLQGSNVSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q N++ RVH + + T GRLS++ PNLQN P + KIRQAFIA G
Sbjct: 640 LPKQIDNITH---RVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNKIRQAFIAEEGYK 696
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
LI ADY Q+ELRIL+H+AN ++ AF D H++TA ++
Sbjct: 697 LISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIF------------------ 738
Query: 929 EDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
L K SE RRKAK +NF I YG + GLA+ VS EA + + ++ E +
Sbjct: 739 ------NLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNGEASEYIKKYFAEYK 792
Query: 988 EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
V + E K + + +V GR P I + + ERAAIN P+QG+ AD+
Sbjct: 793 GVQEYMEQTKAFASSNGYVINFFGRKCFVPLIHD--KKLKQFAERAAINAPIQGTNADII 850
Query: 1048 MCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRV 1107
AM+ + + L +L+LQ+HDE++ E P + E+ I+ + M N+ V
Sbjct: 851 KIAMINLDQEIEKNNLKTRLVLQIHDELLFEVPEDEVELVTPIIKKIME----NSTNMDV 906
Query: 1108 DLSVDAKCAQNW 1119
+ + + NW
Sbjct: 907 PIITEIRVGNNW 918
>sp|Q9F173|DPO1_SALTY DNA polymerase I OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=polA PE=3 SV=2
Length = 928
Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 171/317 (53%), Gaps = 37/317 (11%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 644 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 699
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH 927
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++ ++V TG+
Sbjct: 700 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSV-TGE------ 752
Query: 928 GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
+RR AK +NF + YG + GL+R + +EA+K +DL++
Sbjct: 753 ----------------QRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYMDLYFERYP 796
Query: 988 EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
VL + E + +++ +V TL GR P IKS ++R ERAAIN P+QG+AAD+
Sbjct: 797 GVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPMQGTAADII 856
Query: 1048 MCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRV 1107
AM+ + + ++ ++++QVHDE++ E + + + + M +N R+
Sbjct: 857 KRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM------ENCTRI 910
Query: 1108 D--LSVDAKCAQNWYSA 1122
D L V+ +NW A
Sbjct: 911 DVPLLVEVGSGENWDQA 927
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 11/136 (8%)
Query: 340 SFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
S+ + V ++D+V+ W+ K K V A DTE +D V + F+I
Sbjct: 326 SYENYVTILDDVTLES---WIEKLK-KAPVFAFDTETDSLDNIAANLVG----LSFAIEP 377
Query: 400 GPEADFGNGKSCIWVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKV 458
G A ++D D R L P ED ++KV N +D VL+NYG+++
Sbjct: 378 GVAAYVPVAHD--YLDAPDQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIEL 435
Query: 459 SGFHADTMHMARLWDS 474
G DTM + + +S
Sbjct: 436 RGIAFDTMLESYILNS 451
>sp|Q9RLA0|DPO1_RICTY DNA polymerase I OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=polA PE=3 SV=1
Length = 872
Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 158/312 (50%), Gaps = 35/312 (11%)
Query: 810 LPLQGSNVSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q +N++ R+H + + T GRLS++ PNLQN P D KIRQAFIA G
Sbjct: 590 LPKQINNITK---RIHTTFLQTSTTTGRLSSQEPNLQNIPTRSSDGNKIRQAFIAEDGYK 646
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
LI ADY Q+ELRIL+H+AN + AF D H++TA ++
Sbjct: 647 LISADYSQIELRILSHIANVDVLKQAFINKEDIHTQTACQIF------------------ 688
Query: 929 EDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
L K SE RRKAK +NF I YG + GLA+ VS A + + ++ E +
Sbjct: 689 ------NLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNGTAAEYIKQYFAEYK 742
Query: 988 EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
+ + K + + +V GR P I + + ERAAIN P+QG++AD+
Sbjct: 743 GMQEYMVQTKAYANRNGYVTNFFGRKCFIPLIHD--KKLKQFAERAAINAPIQGTSADII 800
Query: 1048 MCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRV 1107
AM+++++ ++L +L+LQ+HDE++ E P E+ +V+ + K N+ V
Sbjct: 801 KIAMIKLAQEIEKRKLKTRLILQIHDELLFEVP----EIELELVIPIIKKIMEYSTNIDV 856
Query: 1108 DLSVDAKCAQNW 1119
+ + + NW
Sbjct: 857 PIITEIRAGNNW 868
>sp|P00582|DPO1_ECOLI DNA polymerase I OS=Escherichia coli (strain K12) GN=polA PE=1 SV=1
Length = 928
Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 108/314 (34%), Positives = 164/314 (52%), Gaps = 31/314 (9%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA
Sbjct: 644 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYV 700
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 701 IVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFG----------------- 743
Query: 929 EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
+PL + + +RR AK +NF + YG + GLAR + +EA+K +DL++
Sbjct: 744 -----LPL-ETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPG 797
Query: 989 VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
VL + E + +++ +V TL GR P IKS ++R ERAAIN P+QG+AAD+
Sbjct: 798 VLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIK 857
Query: 1049 CAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVD 1108
AM+ + + ++ ++++QVHDE++ E + + + + M L V
Sbjct: 858 RAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMEN----CTRLDVP 913
Query: 1109 LSVDAKCAQNWYSA 1122
L V+ +NW A
Sbjct: 914 LLVEVGSGENWDQA 927
Score = 37.0 bits (84), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
L P ED KV N +D +L NYG+++ G DTM + + +S
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNS 451
>sp|Q92GB7|DPO1_RICCN DNA polymerase I OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=polA PE=3 SV=1
Length = 875
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 156/312 (50%), Gaps = 35/312 (11%)
Query: 810 LPLQGSNVSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q N++ RVH + + T GRLS++ PNLQN P + +IR+AFIA G
Sbjct: 593 LPKQIDNITH---RVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNQIRKAFIAEEGYK 649
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
LI ADY Q+ELRIL+H+AN ++ AF D H++TA ++
Sbjct: 650 LISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIF------------------ 691
Query: 929 EDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
L K SE RRKAK +NF I YG + GLA+ V+ EA + + ++ E +
Sbjct: 692 ------NLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYK 745
Query: 988 EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
V + E K + + +V GR P I + + ERAAIN P+QG+ D+
Sbjct: 746 GVQEYMEQTKAFASSNGYVTNCFGRKCFVPLIHD--KKLKQFAERAAINAPIQGTNTDII 803
Query: 1048 MCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRV 1107
AM+ + + ++L +L+LQ+HDE++ E P + E+ I+ + M N+ V
Sbjct: 804 KIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIME----NSTNMAV 859
Query: 1108 DLSVDAKCAQNW 1119
+ + + NW
Sbjct: 860 PIITEIRAGNNW 871
>sp|O08307|DPO1_CHLAA DNA polymerase I OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM
635 / J-10-fl) GN=polA PE=3 SV=1
Length = 942
Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 162/304 (53%), Gaps = 28/304 (9%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GR+H S N + TGRLS+ PNLQN P ++ +IR+AF+A PG + ADY
Sbjct: 657 VNPRTGRIHTSYNQLGAATGRLSSNNPNLQNIPVRTEEGREIRRAFVAEPGWRFVAADYS 716
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
Q+ELR+LAH++ ++++ AF+ G D H+ TA ++ AV+ Q
Sbjct: 717 QIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQ-------------- 762
Query: 936 LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
RR AK + F + YG + GLA+ + + A++ +D + + + + +
Sbjct: 763 ---------RRVAKTVVFGVIYGISAFGLAQRLGIERDLARQLIDNLFAQFPGIRRYIDQ 813
Query: 996 RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
+ R +V TL GR RR + ++R ER AIN P+QG+AAD+ AM+ +
Sbjct: 814 TLEFGRQHGYVQTLFGR-RRVMEDLRASGARRAAAEREAINAPIQGTAADLMKMAMVNVH 872
Query: 1056 KNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKC 1115
+ R + L +LLLQVHDE+I E P + E A ++ + MS + +L V LSV+ +
Sbjct: 873 RALREQGLRTRLLLQVHDELIAEAPEDEVEPAARLLRDVMSSVY---RDLVVPLSVNLEV 929
Query: 1116 AQNW 1119
NW
Sbjct: 930 GPNW 933
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 107/248 (43%), Gaps = 56/248 (22%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
+++ APFF +P K HN FD VL G+KVSG DTM A
Sbjct: 406 EVVTALAPFFANPQQPKFAHNAKFDMEVLAGAGIKVSGLAFDTMIAA------------- 452
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
A+ G R+ + +D Y+ + + T +++D+ GR K S ++
Sbjct: 453 ---AMLGKRQGL-KDLAFYELKLPEPPT--------TIEDLIGRG--NKQISFAEV---- 494
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
PVE+ Y+A D++ TL+L + L++ +L+ +P ++ D Y
Sbjct: 495 PVEQ--------AAPYAAADALYTLRLTERLQR-------QLEAEP----ALHDLYYRVE 535
Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
P E+L ME G+ +D+EYL E+ + V R + A N+ S
Sbjct: 536 LPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQAGGP------FNINSGQ 589
Query: 663 QLRQLLFG 670
QL +LFG
Sbjct: 590 QLNDVLFG 597
>sp|Q9RLB6|DPO1_RICHE DNA polymerase I OS=Rickettsia helvetica GN=polA PE=3 SV=1
Length = 921
Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 157/312 (50%), Gaps = 35/312 (11%)
Query: 810 LPLQGSNVSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q N++ RVH + + T GRLS++ PNLQN P + KIRQAFIA G
Sbjct: 639 LPKQIDNITH---RVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNKIRQAFIAEEGYK 695
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
LI ADY Q+ELRIL+H+AN ++ AF D H++TA ++
Sbjct: 696 LISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIF------------------ 737
Query: 929 EDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
L K +E RRKAK +NF I YG + GLA+ V+ EA + + ++ E +
Sbjct: 738 ------NLQKHELTNEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYK 791
Query: 988 EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
V + E K + + +V GR P I + + ERAAIN P+QG+ AD+
Sbjct: 792 GVQEYMEQTKAFASSNGYVTNFFGRKCFVPLIHD--KKLKQFAERAAINAPIQGTNADII 849
Query: 1048 MCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRV 1107
AM+ + + ++L +L+LQ+HDE++ E P + E+ I+ + M N+ V
Sbjct: 850 KIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIIIPIIKKIMEY----STNMDV 905
Query: 1108 DLSVDAKCAQNW 1119
+ + + NW
Sbjct: 906 PIITEIRTGNNW 917
Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 103/242 (42%), Gaps = 46/242 (19%)
Query: 434 DPSIKKVWHNYSFDNHVLENYGLK-VSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRK 492
D SIKK+ Y LK + F+A+ H + + Y+L A +
Sbjct: 383 DKSIKKI------------TYSLKPLLKFYANQSHEITAIEDLELMQ--YALSAGLSQKN 428
Query: 493 VMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREER 552
+ E K + +SK E F G + + + +++D S G S + P+E ++ +R
Sbjct: 429 LFEEALKEDNRPLSKLAYREEFKGD-TERSTAAYKSVREDASTGSTSKL-PLE-VEFGKR 485
Query: 553 ELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKM 612
+ I+ SA N + LYK + +LE+ D K F Y + P IL KM
Sbjct: 486 PIVINESARIVANFISLYK---QNILELK---DNKA------FRLYSDIDLPICFILDKM 533
Query: 613 ETEGMLVDREYLSEIE-----KVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
E G+ VD YL ++ ++ + E+E F +K N+GS QL ++
Sbjct: 534 EKVGIKVDANYLKQLSTEFGAEILKLEEEI----FALSGTK-------FNIGSLKQLGEI 582
Query: 668 LF 669
LF
Sbjct: 583 LF 584
>sp|O51498|DPO1_BORBU DNA polymerase I OS=Borrelia burgdorferi (strain ATCC 35210 / B31 /
CIP 102532 / DSM 4680) GN=polA PE=3 SV=1
Length = 908
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 176/348 (50%), Gaps = 32/348 (9%)
Query: 773 ASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNIN 831
+++ K+ + +E E+ + + ++ + S ++ ++ L ++ K R+H S +
Sbjct: 588 STDIKVLESLREQHESIENLIKYRQIAKLKSTYTDNLIEL----INYKTNRLHTSFIQTK 643
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGR+++ PNLQN P ++ KIR+AF GN I ADY Q+EL ILAHL+ + +
Sbjct: 644 TATGRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVL 703
Query: 892 LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
+ AF+ D H+ TA ++ E+K P L RR AK +
Sbjct: 704 IKAFENNKDIHTETASKLF----------------KIEEKEITPNL-------RRIAKSI 740
Query: 952 NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
NF I Y + LA++ ++ EEAK ++ +++ ++ + + R + T+L
Sbjct: 741 NFGIIYRMSDFRLAKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVRNAGYSETILK 800
Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
R R I S +R+ ER AIN+ +QGSAAD+ AM+++ + K++ K+LLQV
Sbjct: 801 RRRYIKEINSNNYLERSAAERIAINSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQV 860
Query: 1072 HDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
HDE+++E P E K I+ M + L + L + + ++W
Sbjct: 861 HDEMLIESPIEEENEVKKILKIMMETAY----TLNLPLRANIETGKSW 904
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 92/247 (37%), Gaps = 63/247 (25%)
Query: 424 LLNEFAPFFE-DPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
++ +F FE +P I + NY FD +L+N G + DTM A L D++ + +
Sbjct: 389 IIQKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPPYFDTMIAAYLIDTNSKVSLDF 446
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
E + + ED ++K+ + IS
Sbjct: 447 LAEKYLMHKNIKYEDV------------------------------IQKNDNFANISL-- 474
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
E+ SYS+ D+ T +L+ KKL E E
Sbjct: 475 ----------EMATSYSSEDADITFRLFNIFTKKLKEDKLDKL------------MHEIE 512
Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
PF +++++ME G+ +D+EYL E K E EA N K N+ S
Sbjct: 513 MPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIKSIGID------FNLNSPK 566
Query: 663 QLRQLLF 669
Q+ ++LF
Sbjct: 567 QMHEILF 573
>sp|O05949|DPO1_RICPR DNA polymerase I OS=Rickettsia prowazekii (strain Madrid E) GN=polA
PE=3 SV=1
Length = 867
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/312 (33%), Positives = 155/312 (49%), Gaps = 35/312 (11%)
Query: 810 LPLQGSNVSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q +N++ R+H + + T GRLS++ PNLQN P D KIR+AFIA G
Sbjct: 585 LPKQINNITK---RIHTTFLQTSTTTGRLSSQEPNLQNVPIRSSDGNKIREAFIAEEGYK 641
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
LI ADY Q+ELRIL+H+AN + AF D H++TA ++
Sbjct: 642 LISADYSQIELRILSHIANIDVLKQAFINKEDIHTQTACQIF------------------ 683
Query: 929 EDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
L K SE RRKAK +NF I YG + GLA+ VS A + + ++ E +
Sbjct: 684 ------NLKKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNSTASEYIKQYFAEYK 737
Query: 988 EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
V + K + + +V GR P I + + ERAAIN P+QG+ AD+
Sbjct: 738 GVQEYMTQTKACASRNGYVTNFFGRKCFIPLIHD--KKLKQFAERAAINAPIQGTNADII 795
Query: 1048 MCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRV 1107
AM+++ K ++L +L+LQ+HDE++ E P E+ I+ + M N+ V
Sbjct: 796 KIAMIKLDKEIEERKLKTRLILQIHDELLFEVPEIEVEIVIPIIKKIMEHS----TNMNV 851
Query: 1108 DLSVDAKCAQNW 1119
+ + K NW
Sbjct: 852 PIITEIKAGNNW 863
>sp|Q55971|DPO1_SYNY3 DNA polymerase I OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=polA PE=3 SV=1
Length = 986
Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 161/353 (45%), Gaps = 55/353 (15%)
Query: 792 ISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQP 848
I A+ E ++ L S ++ LP V+G+ R+H N T TGRLS+ PNLQN P
Sbjct: 668 IDAILEHRTLAKLKSTYVDALP---ELVNGQTQRIHTDFNQAVTSTGRLSSSNPNLQNIP 724
Query: 849 ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
+IR+AF+ L+ ADY Q+ELRILAHL+ +L A+ D H TA
Sbjct: 725 IRSDFSRQIRRAFLPQKDWLLVSADYSQIELRILAHLSQEPVLLQAYGDRQDVHGVTAK- 783
Query: 909 MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
L + ED P +ER K +NF + YG AR+
Sbjct: 784 ---------------LLFGKEDITP---------AERNLGKTINFGVIYGMGAQRFARET 819
Query: 969 KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
+S E ++ +D ++ +V + E K E+ +V T++GR R F + R R
Sbjct: 820 GISAVEGREFIDRYHRTYAQVFDYLETMKLEAIAKGYVTTIVGRRRYFNFVTEALRQLRG 879
Query: 1029 ------------------HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQ 1070
+ R+A N P+QGS+AD+ AM++++K L+ ++LLQ
Sbjct: 880 KTVTELDLVDVKMNYNDAQLLRSAANAPIQGSSADIIKIAMVKLAK--LLESYQTRMLLQ 937
Query: 1071 VHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
VHDE+I E P E E ++ M + L V L V+ NW AK
Sbjct: 938 VHDELIFEMPPEEWEELAPLIQNTMEQAL----TLSVPLVVEMHRGSNWMEAK 986
>sp|P56105|DPO1_HELPY DNA polymerase I OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=polA PE=3 SV=2
Length = 891
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 154/337 (45%), Gaps = 47/337 (13%)
Query: 791 AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
+I+ + E ++ L + + PL + K+ ++H + + T TGRLS+ PNLQN P
Sbjct: 589 SIALILEYRELNKLFNTYTTPLL--RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPV 646
Query: 850 LEKDRYKIRQAFIAVPGN-SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
IR+ FIA L+ DY Q+ELR+LAH + K +++AF G D H T+
Sbjct: 647 RSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKA 706
Query: 909 MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK-AKMLNFSIAYGKTPVGLARD 967
++ G+ L A E+R AK +NF + YG L+
Sbjct: 707 LF---------GEYL------------------AKEKRSIAKSINFGLVYGMGSKKLSET 739
Query: 968 WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
+S+ EAK ++ ++ + + K+E + TLLGR R F + +
Sbjct: 740 LNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYVKG 799
Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE-----GPSE 1082
N++ R +N QGSA+D+ ML++S+ + +LLLQVHDE+I E P
Sbjct: 800 NYL-REGVNAIFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPEL 857
Query: 1083 SAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
E+ + + E LRV L A A+ W
Sbjct: 858 QQEIQRILNDEVYP--------LRVPLETSAFIAKRW 886
>sp|Q9ZJE9|DPO1_HELPJ DNA polymerase I OS=Helicobacter pylori (strain J99) GN=polA PE=3
SV=1
Length = 897
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 152/341 (44%), Gaps = 47/341 (13%)
Query: 791 AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
+I + E ++ L + + PL + K+ ++H + + T TGRLS+ PNLQN P
Sbjct: 595 SIPLILEYRELNKLFNTYTTPLL--RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPV 652
Query: 850 LEKDRYKIRQAFIAVPGN-SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
IR+ FIA L+ DY Q+ELR+LAH + K +++AF G D H T+
Sbjct: 653 RSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKA 712
Query: 909 MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK-AKMLNFSIAYGKTPVGLARD 967
++ GED A E+R AK +NF + YG L+
Sbjct: 713 LF-----------------GED----------LAKEKRSIAKSINFGLVYGMGSKKLSET 745
Query: 968 WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
+ + EAK ++ ++ + + ++E + TLLGR R F +
Sbjct: 746 LSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVFDFTGVNDYVKG 805
Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILE-----GPSE 1082
N++ R +N QGSA+D+ ML++S+ + +LLLQVHDE+I E P
Sbjct: 806 NYL-REGVNAIFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPEL 863
Query: 1083 SAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123
E+ + + E LRV L A A+ W K
Sbjct: 864 QQEIQRILNDEVYP--------LRVPLETSAFIAKRWNELK 896
>sp|P30314|DPOL_BPSP1 DNA polymerase OS=Bacillus phage SP01 GN=31 PE=3 SV=2
Length = 924
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 153/316 (48%), Gaps = 40/316 (12%)
Query: 790 DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQ--- 845
D + L E + L +NF+ L S + + VH S NI+ T TGRLS+ PN Q
Sbjct: 545 DFVKVLMEFRKANHLYNNFVSKL--SLMIDPDNIVHPSYNIHGTVTGRLSSNEPNAQQFP 602
Query: 846 ---NQPALEKDRYKIRQAFIAVPGNSLIVA--DYGQLELRILAHLANCKSMLDAFKAGGD 900
N P L + ++I++ F + G+ ++ DY QLELRIL + +D +++G D
Sbjct: 603 RKVNTPTLFQYNFEIKKMFNSRFGDGGVIVQFDYSQLELRILVCYYSRPYTIDLYRSGAD 662
Query: 901 FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
H A + + V +E +D +R +K + F I Y ++
Sbjct: 663 LHKAVASDAF----------GVAIEEVSKD-------------QRTASKKIQFGIVYQES 699
Query: 961 PVGLARDWK-----VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARR 1015
GL+ D + +S +E + + ++ +V W KK + + V TL G R
Sbjct: 700 ARGLSEDLRAEGITMSEDECEIFIKKYFKRFPKVSKWIRDTKKHVKDISTVKTLTGATRN 759
Query: 1016 FPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEV 1075
P I S+ +S+ N ER A+NTP+QG+ +D + +++ I++ R L ++ + VHD +
Sbjct: 760 LPDIDSIDQSKANEAERQAVNTPIQGTGSDCTLMSLILINQWLRESGLRSRICITVHDSI 819
Query: 1076 ILEGP-SESAEVAKAI 1090
+L+ P E EVAK +
Sbjct: 820 VLDCPKDEVLEVAKKV 835
>sp|O67779|DPO1_AQUAE DNA polymerase I OS=Aquifex aeolicus (strain VF5) GN=polA PE=3 SV=1
Length = 574
Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 107/361 (29%), Positives = 169/361 (46%), Gaps = 61/361 (16%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
KG V++++K + Q+ + + + E+ + + L+ KNGRV+
Sbjct: 262 KGNVSTDDKALTSYQD----VEPVKLVLEIRKLKKIADK----LKELKEHLKNGRVYPEF 313
Query: 829 -NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
I TGR+S+ PN+QN + +D +R F A GN+ +++D+ Q+ELRI A
Sbjct: 314 KQIGAVTGRMSSAHPNIQN---IHRD---MRGIFKAEEGNTFVISDFSQIELRIAAEYVK 367
Query: 888 CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
MLDAFK G D H TA +V G+ ++ ER+
Sbjct: 368 DPLMLDAFKKGKDMHRYTA---------SVVLGKK--------------EEEITKEERQL 404
Query: 948 AKMLNFSIAYGKTPVGLARDWK------VSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
AK +NF + YG + GLA K +S+EEA+ + ++ + W + KKE +
Sbjct: 405 AKAINFGLIYGISAKGLAEYAKLGYGVEISLEEAQVLRERFFKNFKAFKEWHDRVKKELK 464
Query: 1002 IDNHV--HTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
V HTLLG RRF A + A+N P+QG+ AD+ A+L N +
Sbjct: 465 EKGEVKGHTLLG--RRFSA----------NTFNDAVNYPIQGTGADLLKLAVLLFDANLQ 512
Query: 1060 LKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLR-VDLSVDAKCAQN 1118
K + KL+ VHDE+++E E AE K I+ + M GK L+ V + V++ +
Sbjct: 513 KKGIDAKLVNLVHDEIVVECEKEKAEEVKEILEKSMKTA--GKIILKEVPVEVESVINER 570
Query: 1119 W 1119
W
Sbjct: 571 W 571
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 118/296 (39%), Gaps = 60/296 (20%)
Query: 857 IRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNA 916
+R AF+ PG S++ ADY QLELRILAHL++ + ++ G D A
Sbjct: 2314 MRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA---------- 2363
Query: 917 VETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAK 976
E + E G+D R++AK + + I YG L + +A
Sbjct: 2364 AEWKMIEPESVGDDL-------------RQQAKQICYGIIYGMGAKSLGEQMGIKENDAA 2410
Query: 977 KTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAIN 1036
+D + + + + K + D V T+LGR R P IK ++ H ER AIN
Sbjct: 2411 CYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAIN 2470
Query: 1037 TPVQGSAADVAMCAMLEISKN-------------------------ARLKEL-------- 1063
T VQGSAAD+ A + I K +R ++L
Sbjct: 2471 TIVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLSRKRKLQGMFCPIR 2530
Query: 1064 GWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNW 1119
G +LQ+HDE++ E E IV M L V L V K +W
Sbjct: 2531 GGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAV----KLSVKLKVKVKIGASW 2582
>sp|Q7TQ07|DPOLN_MOUSE DNA polymerase nu OS=Mus musculus GN=Poln PE=2 SV=2
Length = 864
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 150/323 (46%), Gaps = 47/323 (14%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQ-------------NQPALEKDRYKI--RQAFIA 863
K G + + N T TGRLSA+ PN+Q N E++ I R F++
Sbjct: 553 KKGSISSTWNQTGTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISPRTLFVS 612
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG---GDFHSRTAMNMYPHIRNAVETG 920
G++ + AD+ Q+ELRILAHL+ +L F+ F + T+
Sbjct: 613 SEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTS-------------- 658
Query: 921 QVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVD 980
+W +D P ++ +R + K + +S+ YG LA V+V EA ++
Sbjct: 659 ----QW--KDIP----IERVTHMDREQTKKVVYSVVYGAGKERLAACLGVTVLEATHFLE 708
Query: 981 LWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQ 1040
+ + +++ + + + +V ++LGR R P I + + R ER A+N VQ
Sbjct: 709 RFLQKYKKIKDFAQTVIGQCHSAGYVTSILGRRRPLPRICAQDQQLRAQAERQAVNFVVQ 768
Query: 1041 GSAADVAMCAMLEISKN-ARLKELGWKLLLQVHDEVILEGP-SESAEVAKAI--VVECMS 1096
GSAAD+ AM+ IS A L +L+ Q+HDE++ E ++ E A + ++E +
Sbjct: 769 GSAADLCKLAMIRISTAVATSPTLTARLVAQIHDELLFEVEDTQVPEFAALVRRIMESLQ 828
Query: 1097 KPFNGKNNLRVDLSVDAKCAQNW 1119
+ + L+V L V+ ++W
Sbjct: 829 QVQTLELQLQVPLKVNLSVGRSW 851
>sp|Q7Z5Q5|DPOLN_HUMAN DNA polymerase nu OS=Homo sapiens GN=POLN PE=1 SV=2
Length = 900
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 145/326 (44%), Gaps = 53/326 (16%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKI------------------RQA 860
K G + + N T TGRLSA+ PN+Q + K +I R
Sbjct: 554 KKGSISSTWNQTGTVTGRLSAKHPNIQ---GISKHPIQITTPKNFKGKEDKILTISPRAM 610
Query: 861 FIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG---GDFHSRTAMNMYPHIRNAV 917
F++ G++ + AD+ Q+ELRIL HL+ +L F+ F + T+
Sbjct: 611 FVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTS----------- 659
Query: 918 ETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKK 977
+W +D P ++ ++R + K + +++ YG LA V ++EA +
Sbjct: 660 -------QW--KDVP----VEQVTHADREQTKKVVYAVVYGAGKERLAACLGVPIQEAAQ 706
Query: 978 TVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINT 1037
++ + + +++ + A + V +++GR R P I + + R ER A+N
Sbjct: 707 FLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNF 766
Query: 1038 PVQGSAADVAMCAMLEI-SKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIV---VE 1093
VQGSAAD+ AM+ + + A L +L+ Q+HDE++ E A+V +E
Sbjct: 767 VVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVEDPQIPECAALVRRTME 826
Query: 1094 CMSKPFNGKNNLRVDLSVDAKCAQNW 1119
+ + + L+V L V ++W
Sbjct: 827 SLEQVQALELQLQVPLKVSLSAGRSW 852
>sp|O64235|DPOL_BPMD2 DNA polymerase OS=Mycobacterium phage D29 GN=44 PE=3 SV=1
Length = 607
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 120/266 (45%), Gaps = 48/266 (18%)
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
R H +N + T R+S Q PA + + +R+ F+A PG+ + DY ELR+
Sbjct: 347 RCHTFVNPLQARTSRMSITGIPAQTLPASD---WTVRRCFLADPGHVMASIDYQAQELRV 403
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY-PHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
LA L+ ++M+ AFK G D H TA + HI +D P
Sbjct: 404 LAALSGDRTMIQAFKDGADLHLMTARAAFGDHIT--------------KDDP-------- 441
Query: 941 FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
ER+ AK +NF YG +A +S+E AK+ VD + V + E+
Sbjct: 442 ---ERKYAKTVNFGRVYGGGANTVAEQTGISIETAKQVVDGFDKAYPGVTRYSRKLANEA 498
Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
+ + ++ +GR R P +S T S A+N +Q ++ DV A++ RL
Sbjct: 499 KRNGYIINPMGR--RLPVDRSRTYS--------ALNYQIQSTSRDVTCKALI------RL 542
Query: 1061 KELGWK--LLLQVHDEVILEGPSESA 1084
E G+ L L +HDE++ P+E A
Sbjct: 543 HEAGFTPYLRLPIHDEIVASLPAEKA 568
>sp|Q05254|DPOL_BPML5 DNA polymerase OS=Mycobacterium phage L5 GN=44 PE=3 SV=1
Length = 595
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 116/278 (41%), Gaps = 54/278 (19%)
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
R H +N + T R+S Q P+ + + +R+ FIA PG+ + DY ELR+
Sbjct: 343 RCHTFINPLQARTSRMSITGIPAQTLPSSD---WIVRRCFIAEPGDVMASVDYQAQELRV 399
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
LA L+ ++M++AF+ G D H TA D VP
Sbjct: 400 LAALSGDRNMIEAFENGADLHQMTA-----------------------DAAQVP------ 430
Query: 942 ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
R+ K NF YG LA +S+ AK+ + + V + E+
Sbjct: 431 ---RKVGKTANFQKVYGGGAKALAEAVGISIPVAKRVHEAFSATYPGVERLSKKLAMEAG 487
Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
+ ++ +GR R P S T S A+N +Q S+ DV A++ RL
Sbjct: 488 RNGYIVNAMGR--RLPVDSSRTYS--------ALNYMIQSSSRDVTCRALI------RLH 531
Query: 1062 ELGWK--LLLQVHDEVILEGPSESAEVAKAIVVECMSK 1097
E G+ L L +HDE++ P+ AE A A + M +
Sbjct: 532 EAGYTPYLRLPIHDEIVASLPASEAERAAAHIGHLMQE 569
Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 92/218 (42%), Gaps = 52/218 (23%)
Query: 431 FFEDPSI------KKVWHNYSFDNHVLEN-YGLKVSGFHA---DTMHMARLWDSSRRTEG 480
F ED I + V N SFD VL+ +G+++ G DT +A+L D G
Sbjct: 78 FIEDVRIAIGALKRMVLQNASFDLQVLDQCFGIEMEGLWPRVLDTQILAKLVDPRPFEAG 137
Query: 481 GY--SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKI 538
G+ SLE L K +SED+ K + M K++ + K A
Sbjct: 138 GFGHSLEELIA--KFISEDQAENVKKL---------MAKLAAE--------HKTTKAKIW 178
Query: 539 STIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFY 598
STI +L E ++ Y+ D+I T ++ KSL + ++S L VP
Sbjct: 179 STI----DLFHPE---YLLYAGMDTIFTARVCKSLTPLVPDVSRSL----VP-------- 219
Query: 599 QEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQE 636
Y EI ++ +G L+D EY + + A+QE
Sbjct: 220 --YEHKISEICSYIDRQGFLLDVEYSRSLAEKWLADQE 255
>sp|P19822|DPOL_BPT5 DNA polymerase OS=Enterobacteria phage T5 PE=3 SV=2
Length = 825
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 41/268 (15%)
Query: 832 TETGRLSAR-RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKS 890
T +GRLS+ + NLQ P +D I+ +A PG +I D E+ A L+ ++
Sbjct: 458 TTSGRLSSSGKLNLQQLP---RDESIIKGCVVAPPGYRVIAWDLTTAEVYYAAVLSGDRN 514
Query: 891 MLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKM 950
M F + R + YP + + L+ D +K F + R+ AK
Sbjct: 515 MQQVF-----INMRNEPDKYPDFHSNIAHMVFKLQCEPRD------VKKLFPALRQAAKA 563
Query: 951 LNFSIAYGKTPVGLARDW----------------KVSVEEAKKTVDLWYNERQEVLTWQE 994
+ F I YG P +A + +V +AK+ ++ ++ + ++ W +
Sbjct: 564 ITFGILYGSGPAKVAHSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKRWID 623
Query: 995 ARKKESRIDNH--VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
K +I NH +++ GR RR I S R + R+ N +Q +++D +
Sbjct: 624 --KCHDQIKNHGFIYSHFGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLG-- 679
Query: 1053 EISKNARLKELGW----KLLLQVHDEVI 1076
+ + + LG K+++ VHD V+
Sbjct: 680 AVDADNEIISLGLEQEMKIVMLVHDSVV 707
>sp|P06225|DPOL_BPSP2 DNA polymerase OS=Bacillus phage SP02 GN=L PE=3 SV=1
Length = 648
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 106/284 (37%), Gaps = 55/284 (19%)
Query: 857 IRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNA 916
+R AFI GN V+D+ +E R++A LA + L+ F G + +A M+ +
Sbjct: 370 VRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEEWRLEVFNTHGKIYEASAAQMFKVPVES 429
Query: 917 VETGQVLLEWHGEDKPPVPLLKDAFASERR---KAKMLNFSIAYGKTPVGLARDWKVSVE 973
+ G L K V L + + + LN +A G+ P L + W+ +
Sbjct: 430 ITKGSPL-----RQKGKVAELALGYQGGKGALIQMGALNMGLAEGELP-ELVKAWRTA-- 481
Query: 974 EAKKTVDLWYNERQEVLTWQEARKK-----------ESRIDNHVHTLLGRARRFPAIK-- 1020
KK V WY+ + + RK ES I + L RR K
Sbjct: 482 -NKKIVKFWYDVEAAAIKAVKERKPVKLQHGLTFLYESGI---LFVQLPSGRRLAYAKPK 537
Query: 1021 ----------SLTRSQR---------NHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
+LT + N + VQ +A D ++ RL
Sbjct: 538 LELDERFGKEALTYEGKLESGKWGRLNTYGGKLVENIVQATARDCLAITLM------RLD 591
Query: 1062 ELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNL 1105
G+K ++ VHDE +L+ P E+ K V M +P + L
Sbjct: 592 NAGYKTVMHVHDEAVLDVPRGKNELDK--VEAIMGEPISWAKGL 633
>sp|Q8VZD5|KSG5_ARATH Shaggy-related protein kinase epsilon OS=Arabidopsis thaliana
GN=ASK5 PE=2 SV=1
Length = 410
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 360 MLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDG 419
+L N + H V CD AK+ VK E + + IC Y PE FG + +D+
Sbjct: 205 LLVNPHTHQVKLCDFGSAKVLVKGEPNISY---ICSRYYRAPELIFGATEYTTTIDIWSA 261
Query: 420 G 420
G
Sbjct: 262 G 262
>sp|Q40518|MSK1_TOBAC Shaggy-related protein kinase NtK-1 OS=Nicotiana tabacum GN=NTK-1
PE=2 SV=1
Length = 409
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 360 MLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDG 419
+L N + H V CD AK+ VK E + + IC Y PE FG + +D+
Sbjct: 204 LLVNPHTHQVKLCDFGSAKVLVKGEPNISY---ICSRYYRAPELIFGATEYTTAIDIWSA 260
Query: 420 G 420
G
Sbjct: 261 G 261
>sp|P43289|KSG3_ARATH Shaggy-related protein kinase gamma OS=Arabidopsis thaliana GN=ASK3
PE=2 SV=1
Length = 409
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 360 MLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDG 419
+L N + H V CD AK+ VK E + + IC Y PE FG + +D+
Sbjct: 204 LLVNPHTHQVKLCDFGSAKVLVKGEPNISY---ICSRYYRAPELIFGATEYTTAIDVWSA 260
Query: 420 G 420
G
Sbjct: 261 G 261
>sp|P43288|KSG1_ARATH Shaggy-related protein kinase alpha OS=Arabidopsis thaliana GN=ASK1
PE=2 SV=3
Length = 405
Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 360 MLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDG 419
+L N + H V CD AK+ VK E + + IC Y PE FG + +D+
Sbjct: 200 LLVNPHTHQVKLCDFGSAKVLVKGEPNISY---ICSRYYRAPELIFGATEYTTAIDVWSA 256
Query: 420 G 420
G
Sbjct: 257 G 257
>sp|Q754R5|UBP4_ASHGO Ubiquitin carboxyl-terminal hydrolase 4 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=DOA4 PE=3 SV=2
Length = 852
Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 30/132 (22%)
Query: 564 INTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEI-------LVKME--- 613
++TL Y+ KK+ +S KPVP K ++D Y+ + F + + K+E
Sbjct: 43 VDTLSNYQDECKKIKSVS-----KPVPSKELYDLYETAYVYFKIVSLIVLNKIPKLEEYA 97
Query: 614 -TEGMLVDRE-------YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD---- 661
+ VDR Y + ++ + ++ A + RF K S+ P+AK +G +
Sbjct: 98 RAKSDAVDRTGKQLLEIYNMLVNRLVKDDRIAEIKRFVKENSRRDPEAKNEQIGVESGKS 157
Query: 662 ---TQLRQLLFG 670
T LR LL G
Sbjct: 158 IPATLLRNLLMG 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,799,374
Number of Sequences: 539616
Number of extensions: 18101453
Number of successful extensions: 48759
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 48565
Number of HSP's gapped (non-prelim): 113
length of query: 1123
length of database: 191,569,459
effective HSP length: 128
effective length of query: 995
effective length of database: 122,498,611
effective search space: 121886117945
effective search space used: 121886117945
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)