Query 001207
Match_columns 1123
No_of_seqs 361 out of 2143
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 16:28:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kfn_A Klenow fragment of DNA 100.0 2E-122 8E-127 1117.2 52.9 592 342-1123 4-605 (605)
2 3pv8_A DNA polymerase I; DNA p 100.0 1E-121 4E-126 1103.1 51.6 560 369-1123 31-592 (592)
3 4dfk_A DNA polymerase I, therm 100.0 4E-117 1E-121 1053.8 44.2 525 368-1123 11-539 (540)
4 1bgx_T TAQ DNA polymerase; DNA 100.0 1E-109 4E-114 1030.8 34.2 524 368-1123 305-831 (832)
5 1x9m_A DNA polymerase; DNA plo 100.0 2E-106 7E-111 991.2 37.2 578 369-1123 1-698 (698)
6 3ikm_A DNA polymerase subunit 100.0 6.2E-44 2.1E-48 435.5 2.8 234 820-1086 769-1081(1172)
7 1yt3_A Ribonuclease D, RNAse D 99.8 4.5E-19 1.5E-23 203.3 18.8 208 344-629 2-219 (375)
8 3saf_A Exosome component 10; e 99.8 3.7E-18 1.3E-22 198.6 17.2 173 343-581 108-281 (428)
9 2e6m_A Werner syndrome ATP-dep 99.7 1.8E-17 6.1E-22 174.6 13.3 182 337-580 9-198 (208)
10 2hbj_A Exosome complex exonucl 99.7 1.9E-16 6.6E-21 183.7 17.9 171 344-580 86-257 (410)
11 3cym_A Uncharacterized protein 99.5 7.1E-14 2.4E-18 163.6 15.4 176 336-580 12-190 (440)
12 1vk0_A Hypothetical protein; h 99.4 1.2E-12 4.2E-17 138.7 10.9 170 346-575 22-205 (206)
13 3v9w_A Ribonuclease T; DEDD nu 98.9 3.8E-09 1.3E-13 113.1 11.4 165 347-580 20-224 (235)
14 2p1j_A POLIII, DNA polymerase 98.3 8.4E-07 2.9E-11 91.8 8.4 110 368-490 13-147 (186)
15 3mxm_B Three prime repair exon 98.3 5.5E-07 1.9E-11 97.4 7.1 120 368-490 13-185 (242)
16 2gui_A DNA polymerase III epsi 98.2 9.3E-06 3.2E-10 84.1 13.7 111 368-490 10-154 (194)
17 1y97_A Three prime repair exon 98.2 1.3E-06 4.6E-11 93.3 6.7 65 423-490 98-180 (238)
18 2f96_A Ribonuclease T; RNAse, 98.1 9E-06 3.1E-10 86.4 11.0 112 368-490 30-182 (224)
19 3u3y_B Three prime repair exon 98.1 4.1E-06 1.4E-10 94.0 7.7 120 368-490 13-185 (314)
20 1w0h_A 3'-5' exonuclease ERI1; 97.8 5.9E-06 2E-10 86.1 2.4 68 421-490 85-165 (204)
21 1wlj_A Interferon stimulated g 97.8 7.2E-05 2.5E-09 77.5 10.6 63 421-490 70-136 (189)
22 3tr8_A Oligoribonuclease; tran 97.7 2.7E-05 9.3E-10 81.2 6.2 103 368-475 10-150 (186)
23 2qxf_A Exodeoxyribonuclease I; 97.6 0.00018 6.1E-09 85.2 10.5 118 368-490 10-172 (482)
24 2igi_A Oligoribonuclease; RNAs 97.4 0.00021 7.1E-09 73.0 7.6 102 368-474 6-145 (180)
25 1zbh_A 3'-5' exonuclease ERI1; 97.4 0.00025 8.7E-09 78.8 7.7 67 421-490 153-233 (299)
26 2xri_A ERI1 exoribonuclease 3; 97.1 0.00042 1.4E-08 73.7 5.5 110 368-490 32-184 (224)
27 1zbu_A ERI-1 homolog, 3'-5' ex 97.0 0.00019 6.4E-09 81.8 2.2 68 421-490 203-283 (349)
28 3cg7_A CRN-4, cell death-relat 96.9 0.00012 4.1E-09 82.0 -0.5 68 421-490 95-179 (308)
29 2gbz_A Oligoribonuclease; ORN, 96.9 0.001 3.5E-08 69.2 6.6 81 368-453 10-121 (194)
30 4gmj_B CCR4-NOT transcription 92.9 2.6 9.1E-05 46.6 17.1 52 434-490 148-215 (285)
31 1noy_A Protein (DNA polymerase 92.8 1.2 4E-05 51.2 14.8 107 422-573 192-335 (388)
32 1qht_A Protein (DNA polymerase 92.8 0.94 3.2E-05 56.7 14.9 153 367-575 135-328 (775)
33 3qex_A DNA polymerase, GP43; d 90.6 2.5 8.5E-05 53.7 15.3 107 422-573 195-338 (903)
34 1s5j_A DNA polymerase I; repli 87.6 11 0.00037 47.6 18.1 36 421-457 257-297 (847)
35 3k59_A POL II, DNA polymerase 80.4 17 0.00058 45.6 15.2 65 422-490 205-302 (786)
36 2d5r_A CCR4-NOT transcription 78.4 53 0.0018 35.6 16.4 53 433-490 137-205 (252)
37 3iay_A DNA polymerase delta ca 78.1 18 0.0006 46.2 14.4 111 422-574 314-466 (919)
38 3spa_A Mtrpol, DNA-directed RN 67.1 1.3E+02 0.0045 39.0 18.3 134 868-1013 821-981 (1134)
39 2py5_A DNA polymerase; protein 59.6 8.7 0.0003 46.4 5.7 66 368-453 7-72 (575)
40 1msw_D DNA-directed RNA polyme 52.4 2.1E+02 0.0073 36.3 16.6 133 868-1002 532-708 (883)
41 2gv9_A DNA polymerase; polymer 45.1 52 0.0018 43.2 9.7 23 553-575 530-552 (1193)
42 4hec_A Putative uncharacterize 31.2 63 0.0022 33.6 6.0 32 422-453 89-123 (190)
43 3ikm_A DNA polymerase subunit 28.3 1.5E+02 0.005 38.5 9.4 72 552-645 322-399 (1172)
44 3i71_A Ethanolamine utilizatio 20.1 78 0.0027 27.0 3.3 29 956-984 16-44 (68)
No 1
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=100.00 E-value=2.2e-122 Score=1117.23 Aligned_cols=592 Identities=29% Similarity=0.406 Sum_probs=521.1
Q ss_pred CCCeEEecCHHHHHHHHHHHHccccCceEEEeecccccccccCccccCcceEEEEeeeCCCcccCCCceEEEEeCCC---
Q 001207 342 YSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD--- 418 (1123)
Q Consensus 342 p~~y~lV~t~e~L~~lv~~L~~a~~~~~VAfDTETtGLd~~~d~Ivg~g~ii~~sl~~~~~I~I~~~~~~~~ID~~~--- 418 (1123)
|.+|.+|++.+++.++++.+... ++++|||||||++++.+++++ +++++.. +..+|++...
T Consensus 4 ~~~y~~I~~~~~l~~~~~~l~~~---~~va~DtEttgl~~~~~~iv~----I~~~~~~---------g~~~yip~~~~~~ 67 (605)
T 2kfn_A 4 YDNYVTILDEETLKAWIAKLEKA---PVFAFDTETDSLDNISANLVG----LSFAIEP---------GVAAYIPVAHDYL 67 (605)
T ss_dssp SSSSEECCSHHHHHHHHHHHHTS---SSEEEEEEESCSCTTTCCEEE----EEEEEET---------TEEEEEECCCCST
T ss_pred hhheEEecCHHHHHHHHHhcccC---CeEEEEEecCCCCcccCceEE----EEEEEcC---------CcEEEEecccccc
Confidence 56689999999999999988664 589999999999998888876 4454422 2245663321
Q ss_pred -----CChhhhHhhhhhhhcCCCceEEEeccHHHHHHHHHcCCCCCCccchHHHHHHhcCCCCCCCCCCCHHHHhhcccc
Q 001207 419 -----GGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKV 493 (1123)
Q Consensus 419 -----~~~~evl~~Lk~~Led~~i~KV~HNaKfDl~vL~r~GI~l~~~vfDTmIAAyLLdp~~~~~gs~sLd~La~~~~~ 493 (1123)
.+..++++.|+++|+++.+.||+||++||+.+|.++|+.+.+++||||+|+||++|... +|+|++|+.+
T Consensus 68 ~~~~~l~~~~vl~~L~~~L~d~~i~kV~hnak~D~~~L~~~Gi~l~~~~~DT~laayLL~p~~~---~~~L~~La~~--- 141 (605)
T 2kfn_A 68 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAG---RHDMDSLAER--- 141 (605)
T ss_dssp TCCCCCCHHHHHHHHHHHHTCTTSCEEESSHHHHHHHHHTTTCCCCCEEEEHHHHHHHHCTTSS---CCSHHHHHHH---
T ss_pred ccccccCHHHHHHHHHHHHcCCCCeEEEECcHHHHHHHHHCCCCCCCccccHHHHHHHhCCCCC---CCCHHHHHHH---
Confidence 12355678899999999899999999999999999999998889999999999999764 6999999987
Q ss_pred cccccccccccccCCCCccccccccchhhhhcccccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001207 494 MSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573 (1123)
Q Consensus 494 ~~~~~Lg~~~~l~k~~~~eel~GK~s~k~lfgK~k~kkq~s~~kdw~~~pl~~l~~~~~e~~l~YAA~DA~~tlrL~e~L 573 (1123)
||++. . ..+++++||++.+ .+|..+|+ +.+..||+.||.++++||+.|
T Consensus 142 ----~Lg~~-----~---------i~~~~~~gKg~~~------~~~~~~~l--------e~~~~yAa~Da~~~~~L~~~L 189 (605)
T 2kfn_A 142 ----WLKHK-----T---------ITFEEIAGKGKNQ------LTFNQIAL--------EEAGRYAAEDADVTLQLHLKM 189 (605)
T ss_dssp ----HSCCC-----C---------CCHHHHHCSSTTC------CCGGGSCH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ----hcCCC-----c---------ccHHHHhCCCccc------CCcccCCH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 44442 1 1133455654311 14655553 457899999999999999999
Q ss_pred HHHHhh-cccccCCCCCCCchHHHHHHHHhcchHHHHHHhhhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 001207 574 KKKLLE-MSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD 652 (1123)
Q Consensus 574 ~~kL~e-~~~~~~~~~~~~~~l~~Ly~~IEmPLv~VLa~ME~~GI~VD~e~L~~l~~~l~~e~e~le~~i~~~~~~~~~~ 652 (1123)
.++|++ . ++++||.++||||++||++||.+||+||.+.|.++..++..+++.++++++++ +
T Consensus 190 ~~~L~~~~------------~l~~L~~~iE~Pl~~vLa~ME~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~------~ 251 (605)
T 2kfn_A 190 WPDLQKHK------------GPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEI------A 251 (605)
T ss_dssp HHHTTSCH------------HHHHHHHHTHHHHHHHHHHHHHHCBCBCHHHHHHHHHHHHHHHHHHHHHHHHH------S
T ss_pred HHHHHHHh------------hHHHHHHHHHhHHHHHHHHHHHcCeEeCHHHHHHHHHHHHHHHHHHHHHHHHH------h
Confidence 999975 4 68999999999999999999999999999999999999999999999999877 4
Q ss_pred CccccCCCHHHHHHhhcCCCCCCCCCCCCCCcccccccCCCccccccCCCCCcccccchhcccccCCCCccccccCCCCC
Q 001207 653 AKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSV 732 (1123)
Q Consensus 653 g~~fNi~S~kQl~~lLFe~~~~~k~~~l~lp~er~~k~~~~~~~~~~~kk~~~~~~~~~l~~~Gi~lp~~~~TktG~~St 732 (1123)
|++||++|||||+++||+ ++|||+ .++|+||+|||
T Consensus 252 g~~fN~~Spkql~~~Lf~--------~lglp~-------------------------------------~kktk~g~~st 286 (605)
T 2kfn_A 252 GEEFNLSSTKQLQTILFE--------KQGIKP-------------------------------------LKKTPGGAPST 286 (605)
T ss_dssp SSCCCSCTTTTSHHHHTT--------TSSCSC-------------------------------------CCCCC----TT
T ss_pred CCCCCCCCHHHHHHHHHH--------hcCCCC-------------------------------------CCcCCCCCccc
Confidence 789999999999999998 678752 34688999999
Q ss_pred cHHHHHHHHhccCccccccCCCCCCCCCCCcccccccccccccchhhhhHHHHHHHhHHHHHHHHHHhHhhhHhhhhccc
Q 001207 733 GGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPL 812 (1123)
Q Consensus 733 ~~~vLe~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lle~r~l~Kl~styi~~l 812 (1123)
+++||++|+..||+ ++.||+||+++|++|||+++|
T Consensus 287 ~~~vL~~l~~~~p~---------------------------------------------~~~il~~r~l~Kl~sty~~~l 321 (605)
T 2kfn_A 287 SEEVLEELALDYPL---------------------------------------------PKVILEYRGLAKLKSTYTDKL 321 (605)
T ss_dssp TCCHHHHHTTTCSH---------------------------------------------HHHHHHHHHHHHHHHHTTTTG
T ss_pred cHHHHHHHHhcChH---------------------------------------------HHHHHHHHHHHHHhccHHHHH
Confidence 99999999866653 577999999999999999999
Q ss_pred ccCCccCCCCeeeecccc-cCccccccccCCCcccCCccccchhhhhceEEcCCCCeEEeecccchhHHHHHHhcCchhH
Q 001207 813 QGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891 (1123)
Q Consensus 813 ~~~~i~~~dGRIH~~~n~-~T~TGRlSss~PNLQNIP~~~~~g~~iR~~Fia~~G~~lVsaDySQIELRIlAhlS~D~~L 891 (1123)
+. .+.+.+|||||+|+| +|+||||||++|||||||++++.|+.||+||+|+||++||+|||||||||||||||+|+.|
T Consensus 322 ~~-~v~~~~grih~~~~~~~t~TGRlss~~PnlQniP~r~~~g~~iR~~f~~~~g~~lv~aDysqiElRilA~ls~d~~l 400 (605)
T 2kfn_A 322 PL-MINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGL 400 (605)
T ss_dssp GG-GBCTTTSSBCCEEESSCCSSSCCEEESSCGGGSCSSSHHHHHHHHTBBCCTTEEEEEEEETTHHHHHHHHHTTCHHH
T ss_pred HH-hhCcccCeecceeEecccccCceecCCCCcccCCCCccchHhHhheeeCCCCCEEEEechhhhHHHHHHHHcCCHHH
Confidence 96 454445999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCchhHHHHhhhccccchhhccchhhhcccCCCCCCCCcccccchHHHHhhHHHhhhhhhCCChhhhhhhcCCC
Q 001207 892 LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971 (1123)
Q Consensus 892 i~af~~G~DIH~~tA~~if~~~~e~v~~~e~~~~w~~~~~~~v~~~~~vt~~~R~~AK~vnfGiiYG~G~~~LA~~lgiS 971 (1123)
+++|++|.|||+.||+.+||++.+ +||+++|+.||++|||++||||+++||+++|||
T Consensus 401 ~~af~~g~Dih~~tA~~~f~~~~e-----------------------~vt~~~R~~aK~~~fg~~YG~~~~~la~~l~i~ 457 (605)
T 2kfn_A 401 LTAFAEGKDIHRATAAEVFGLPLE-----------------------TVTSEQRRSAKAINFGLIYGMSAFGLARQLNIP 457 (605)
T ss_dssp HHHHHTTCCHHHHHHHHHTTCCGG-----------------------GCCHHHHHHHHHHHHHHHTTCCTTHHHHHHTCC
T ss_pred HHHHhcCCCHHHHHHHHHhCCChh-----------------------hcCHHHHhhhhhhhccccccCCHHHHHHHcCCC
Confidence 999999999999999999998654 467899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHHHHhCCeEecccCCcccCCCCCccChhhhhhhhhhhhhhhhhchHHHHHHHHH
Q 001207 972 VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAM 1051 (1123)
Q Consensus 972 ~~EAk~~i~~f~~~yP~Vk~~~~~~~~~A~~~GyV~Tl~GRrr~lp~~~s~n~~~r~~aeR~AvN~~IQGSAADI~K~AM 1051 (1123)
.+||++++++||++||+|++|++.+++.|+++|||+|++||||++|++++.|...|+.++|+|+|+|||||||||+|.||
T Consensus 458 ~~ea~~~i~~~~~~~p~v~~~~~~~~~~a~~~g~v~tl~GRrr~~p~~~s~~~~~r~~~~r~a~N~~iQgsaaDi~k~am 537 (605)
T 2kfn_A 458 RKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAM 537 (605)
T ss_dssp TTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSEEECTTCCEEECTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCccHHHHHHHHHHHHHHcCcEECCCCCeEECCcccCCCchhhhhhhhhHhhHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCceEEEEeeceEEEeCCcchHHHHHHHHHHHHcCCCCCCCCcceeEEEeccccCChhhcC
Q 001207 1052 LEISKNARLKELGWKLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123 (1123)
Q Consensus 1052 i~i~~~~~l~~~g~~llLqVHDELv~EVp~~~aeev~~~v~~~Me~a~~~~~~L~VPL~vd~~iG~nW~e~~ 1123 (1123)
+++++.+...+++++|++||||||+||||+++++++.++|+++|++++ .|+|||.|++++|+||+|+|
T Consensus 538 ~~~~~~l~~~~~~~~~~l~vHDEl~~ev~~~~~~~~~~~v~~~M~~~~----~l~vpl~v~~~~g~~W~~~~ 605 (605)
T 2kfn_A 538 IAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT----RLDVPLLVEVGSGENWDQAH 605 (605)
T ss_dssp HHHHHHHHHHCCSEEEEEEETTEEEEEEETTTHHHHHHHHHHHHHHSS----CSSSCCCEEEEEESBHHHHC
T ss_pred HHHHHHHHhcCCCceeeEEeccEEEEEcCHHHHHHHHHHHHHHHhccC----CCCCeEEEecccCCChHhcC
Confidence 999986544567789999999999999999999999999999999996 58999999999999999998
No 2
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=100.00 E-value=1.2e-121 Score=1103.15 Aligned_cols=560 Identities=29% Similarity=0.395 Sum_probs=502.8
Q ss_pred eEEEeecccccccccCccccCcceEEEEeeeCCCcccCCCceEEEEeCCCCChhhhHhhhhhhhcCCCceEEEeccHHHH
Q 001207 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDN 448 (1123)
Q Consensus 369 ~VAfDTETtGLd~~~d~Ivg~g~ii~~sl~~~~~I~I~~~~~~~~ID~~~~~~~evl~~Lk~~Led~~i~KV~HNaKfDl 448 (1123)
..++|||+++++++.++++| +++ ..++ ..+||+..+ ..+++.|+++|+|+.+.||+||+|||+
T Consensus 31 ~~aldtE~~~~~~~~a~Lvg----isl--a~~~--------~a~yIp~~~---~~~l~~Lk~lLed~~i~KV~hn~K~Dl 93 (592)
T 3pv8_A 31 KAALVVEVVEENYHDAPIVG----IAV--VNEH--------GRFFLRPET---ALADPQFVAWLGDETKKKSMFDSKRAA 93 (592)
T ss_dssp EEEEEEECCSSSCTTCCCCE----EEE--EETT--------EEEEECHHH---HTTCHHHHHHHTCTTSEEEESSHHHHH
T ss_pred CcEEEEEEcCCccCcccEEE----EEE--EcCC--------ceEEEccch---hhHHHHHHHHHhCCCCeEEEechHHHH
Confidence 47999999999999998876 444 3332 367876421 235678999999999999999999999
Q ss_pred HHHHHcCCCCCCccchHHHHHHhcCCCCCCCCCCCHHHHhhcccccccccccccccccCCCCccccccccchhhhhcccc
Q 001207 449 HVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRK 528 (1123)
Q Consensus 449 ~vL~r~GI~l~~~vfDTmIAAyLLdp~~~~~gs~sLd~La~~~~~~~~~~Lg~~~~l~k~~~~eel~GK~s~k~lfgK~k 528 (1123)
++|.++|+.+++++|||||||||++|... +|+|++|+.+ ||++. .. .+++++|+++
T Consensus 94 ~vL~~~Gi~l~g~~fDTmLAAYLL~p~~~---~~~L~~La~~-------yLg~~-----l~---------~~ee~~gkg~ 149 (592)
T 3pv8_A 94 VALKWKGIELCGVSFDLLLAAYLLDPAQG---VDDVAAAAKM-------KQYEA-----VR---------PDEAVYGKGA 149 (592)
T ss_dssp HHHHHTTCCCCCEEEEHHHHHHHHCGGGC---CCSHHHHHGG-------GTCCS-----SC---------CHHHHHCSGG
T ss_pred HHHHHcCCCCCCccchHHHHHHHcCCCCC---CCCHHHHHHH-------HcCCC-----Cc---------hHHHhcCccc
Confidence 99999999999999999999999999764 5999999987 66654 11 2345566543
Q ss_pred cccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHhcchHHH
Q 001207 529 LKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEI 608 (1123)
Q Consensus 529 ~kkq~s~~kdw~~~pl~~l~~~~~e~~l~YAA~DA~~tlrL~e~L~~kL~e~~~~~~~~~~~~~~l~~Ly~~IEmPLv~V 608 (1123)
. +. .|. .+.+..|||.||.++++|++.|.++|++ .+++++|.++||||++|
T Consensus 150 ~--~~--------~~~-------~e~~~~YAa~DA~~l~~L~~~L~~~L~e------------~~l~~l~~~~E~pl~~v 200 (592)
T 3pv8_A 150 K--RA--------VPD-------EPVLAEHLVRKAAAIWELERPFLDELRR------------NEQDRLLVELEQPLSSI 200 (592)
T ss_dssp G--CC--------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------TTCHHHHHHTHHHHHHH
T ss_pred c--cc--------Ccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHhc------------chhhhHHHHHHhHHHHH
Confidence 1 11 121 2567899999999999999999999987 37899999999999999
Q ss_pred HHHhhhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccCCCHHHHHHhhcCCCCCCCCCCCCCCccccc
Q 001207 609 LVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIF 688 (1123)
Q Consensus 609 La~ME~~GI~VD~e~L~~l~~~l~~e~e~le~~i~~~~~~~~~~g~~fNi~S~kQl~~lLFe~~~~~k~~~l~lp~er~~ 688 (1123)
|++||.+||+||.+.|+++..++..+++.+++++++.+ |+.||++||+||+++||+ ++|||.
T Consensus 201 l~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~~------g~~fN~~Spkql~~~Lf~--------~lgl~~---- 262 (592)
T 3pv8_A 201 LAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELA------GQEFNINSPKQLGVILFE--------KLQLPV---- 262 (592)
T ss_dssp HHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHH------TSCCCTTCHHHHHHHHHT--------TSCCCC----
T ss_pred HHHHhcCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCCCCCCHHHHHHHHHH--------HcCCCC----
Confidence 99999999999999999999999999999999998774 788999999999999998 688752
Q ss_pred ccCCCccccccCCCCCcccccchhcccccCCCCccccccCCCCCcHHHHHHHHhccCccccccCCCCCCCCCCCcccccc
Q 001207 689 KVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEY 768 (1123)
Q Consensus 689 k~~~~~~~~~~~kk~~~~~~~~~l~~~Gi~lp~~~~TktG~~St~~~vLe~La~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (1123)
.++|+|| |||+++||+.|+..||+
T Consensus 263 ---------------------------------~kktktg-~st~~~vL~~l~~~~p~---------------------- 286 (592)
T 3pv8_A 263 ---------------------------------LKKTKTG-YSTSADVLEKLAPYHEI---------------------- 286 (592)
T ss_dssp ---------------------------------CCEETTE-ECCCHHHHHHTTTTCTH----------------------
T ss_pred ---------------------------------CCCCCCC-CCchHHHHHHHHhhcch----------------------
Confidence 2468899 89999999999876653
Q ss_pred cccccccchhhhhHHHHHHHhHHHHHHHHHHhHhhhHhhhhcccccCCccCCCCeeeecccc-cCccccccccCCCcccC
Q 001207 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQ 847 (1123)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~i~~Lle~r~l~Kl~styi~~l~~~~i~~~dGRIH~~~n~-~T~TGRlSss~PNLQNI 847 (1123)
+..||+||+++|++|||+++|+. .+++.||||||+|+| +|+||||||++||||||
T Consensus 287 -----------------------~~~ile~R~l~kl~sty~~~l~~-~v~~~~gRih~~~~q~~t~TGRlss~~PNlQni 342 (592)
T 3pv8_A 287 -----------------------VENILHYRQLGKLQSTYIEGLLK-VVRPATKKVHTIFNQALTQTGRLSSTEPNLQNI 342 (592)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHTHHHHH-HSBTTTTEECCEEESSCCSSSCCEEESSCCSSC
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHH-hhccCCCEECceeeeCCceeeCcccccCCcccc
Confidence 57799999999999999999986 444458999999998 99999999999999999
Q ss_pred CccccchhhhhceEEc-CCCCeEEeecccchhHHHHHHhcCchhHHHHHHcCCchhHHHHhhhccccchhhccchhhhcc
Q 001207 848 PALEKDRYKIRQAFIA-VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW 926 (1123)
Q Consensus 848 P~~~~~g~~iR~~Fia-~~G~~lVsaDySQIELRIlAhlS~D~~Li~af~~G~DIH~~tA~~if~~~~e~v~~~e~~~~w 926 (1123)
|++++.|++||+||+| +|||+||+|||||||||||||||+|+.|+++|++|.|||+.||+.+||++.+
T Consensus 343 P~~~~~g~~iR~~Fv~~~~g~~lv~aDySqiElRilAhls~D~~l~~af~~g~Dih~~tA~~~fg~~~~----------- 411 (592)
T 3pv8_A 343 PIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED----------- 411 (592)
T ss_dssp CCSSHHHHGGGGGEECSSTTEEEEEEEETTHHHHHHHHHHTCHHHHHHHHTTCCHHHHHHHHHHSCCTT-----------
T ss_pred CcCchhhHhhhhEEEecCCCCEEEEechhhHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHhCCChh-----------
Confidence 9999999999999998 8999999999999999999999999999999999999999999999997543
Q ss_pred cCCCCCCCCcccccchHHHHhhHHHhhhhhhCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhCCeE
Q 001207 927 HGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006 (1123)
Q Consensus 927 ~~~~~~~v~~~~~vt~~~R~~AK~vnfGiiYG~G~~~LA~~lgiS~~EAk~~i~~f~~~yP~Vk~~~~~~~~~A~~~GyV 1006 (1123)
+|++++|+.||++|||++||||+++||+++|||.+||++++++||++||+|+.|++.+++.|+++|||
T Consensus 412 ------------~vt~~~R~~aK~~~fg~~YG~~~~~La~~l~i~~~eA~~~i~~~~~~~p~v~~~~~~~~~~a~~~Gyv 479 (592)
T 3pv8_A 412 ------------EVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYV 479 (592)
T ss_dssp ------------TCCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSEE
T ss_pred ------------hCCHHHHHHHHHHHHHHHhcCChHHHHHHcCCCHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHcCCE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCcccCCCCCccChhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHHHHhhccCCceEEEEeeceEEEeCCcchHHH
Q 001207 1007 HTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESAEV 1086 (1123)
Q Consensus 1007 ~Tl~GRrr~lp~~~s~n~~~r~~aeR~AvN~~IQGSAADI~K~AMi~i~~~~~l~~~g~~llLqVHDELv~EVp~~~aee 1086 (1123)
+|++||||++|+++++|...|++++|+|+|+|||||||||+|.||+++++.+.-.+.+++|++||||||+||||++++++
T Consensus 480 ~Tl~GRrr~~p~i~s~n~~~r~~~eR~a~N~~iQGsaAdi~k~ami~i~~~l~~~~~~~~l~lqVHDElv~ev~~~~~~~ 559 (592)
T 3pv8_A 480 TTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMER 559 (592)
T ss_dssp ECTTCCEEECGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSEEEEEEEGGGHHH
T ss_pred ECCCCCeeeCCCccccchhhhhhhhhhhhchhhhhHHHHHHHHHHHHHHHHHHhcCCCceEEEEEcceeEEEeCHHHHHH
Confidence 99999999999999999999999999999999999999999999999998655455778999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCcceeEEEeccccCChhhcC
Q 001207 1087 AKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123 (1123)
Q Consensus 1087 v~~~v~~~Me~a~~~~~~L~VPL~vd~~iG~nW~e~~ 1123 (1123)
+.++|+++|++++ .|+|||.|++++|+||+|+|
T Consensus 560 ~~~~v~~~Me~a~----~l~VPl~v~~~~G~~W~ea~ 592 (592)
T 3pv8_A 560 LCRLVPEVMEQAV----TLRVPLKVDYHYGSTWYDAK 592 (592)
T ss_dssp HHHHHHHHHHTSS----CCSSCCCEEEEEESSTTTCC
T ss_pred HHHHHHHHHhhcc----cCCCcEEEEecccCCHHHhC
Confidence 9999999999986 69999999999999999998
No 3
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=100.00 E-value=4.3e-117 Score=1053.82 Aligned_cols=525 Identities=29% Similarity=0.412 Sum_probs=477.2
Q ss_pred ceEEEeecccccccccCccccCcceEEEEeeeCCCcccCCCceEEEEeCCCCChhhhHhhhhhhhcCCCceEEEeccHHH
Q 001207 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFD 447 (1123)
Q Consensus 368 ~~VAfDTETtGLd~~~d~Ivg~g~ii~~sl~~~~~I~I~~~~~~~~ID~~~~~~~evl~~Lk~~Led~~i~KV~HNaKfD 447 (1123)
+.+++|||+.+++++.++++| ++++ .+ +..++++ .+++.|++||+| +.||+||+|||
T Consensus 11 ~~valDtE~~~~~~~~a~Lvg----i~la--~~--------~~a~~i~-------~~l~~l~~~l~d--~~kV~hn~K~D 67 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMWADLLA----LAAA--RG--------GRVHRAP-------EPYKALRDLKEA--RGLLAKDLSVL 67 (540)
T ss_dssp TTCEEEEEESSSCTTTCCEEE----EEEE--ET--------TEEEECS-------SHHHHHTTCSSB--CSTTHHHHHHH
T ss_pred CceEEEEEecCCccCcccEEE----EEEE--cC--------CEEEEeh-------hhHHHHHHHHcC--CCEEEeccHHH
Confidence 569999999999999988876 4444 32 2345554 367889999998 67999999999
Q ss_pred HHHHHHcCCCCCCccchHHHHHHhcCCCCCCCCCCCHHHHhhcccccccccccccccccCCCCccccccccchhhhhccc
Q 001207 448 NHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR 527 (1123)
Q Consensus 448 l~vL~r~GI~l~~~vfDTmIAAyLLdp~~~~~gs~sLd~La~~~~~~~~~~Lg~~~~l~k~~~~eel~GK~s~k~lfgK~ 527 (1123)
+. ++|+.+. ++||||+||||++|+ + |+|++|+.+ |+++ +++
T Consensus 68 l~---~~Gi~~~-~~fDT~laAyLL~p~-~----~~L~~La~~-------yl~~----------------------~gk- 108 (540)
T 4dfk_A 68 AL---REGLGLP-PGDDPMLLAYLLDPS-N----TTPEGVARR-------YGGE----------------------WTE- 108 (540)
T ss_dssp HH---HTTCCCC-BCCCHHHHHHHHCTT-C----CCHHHHHHH-------HTSC----------------------CCS-
T ss_pred HH---HcCCCCC-cceeHHHHHHHhCCC-C----CCHHHHHHH-------Hhhh----------------------hcc-
Confidence 99 7899987 899999999999998 5 999999987 3321 111
Q ss_pred ccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccCCCCCCCchHHHHHHHHhcchH
Q 001207 528 KLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKL-LEMSWKLDGKPVPGKSMFDFYQEYWQPFG 606 (1123)
Q Consensus 528 k~kkq~s~~kdw~~~pl~~l~~~~~e~~l~YAA~DA~~tlrL~e~L~~kL-~e~~~~~~~~~~~~~~l~~Ly~~IEmPLv 606 (1123)
+|+.||.++++||+.|.++| ++ .+++++|.+|||||+
T Consensus 109 ------------------------------~a~~DA~~t~~L~~~L~~~L~~~------------~~~~~~~~~iE~pl~ 146 (540)
T 4dfk_A 109 ------------------------------EAGERAALSERLFANLWGRLEGE------------ERLLWLYREVERPLS 146 (540)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHTTTC------------HHHHHHHHHTHHHHH
T ss_pred ------------------------------chHHHHHHHHHHHHHHHHHHHhh------------hhhHHHHHHHHhHHH
Confidence 24579999999999999999 54 489999999999999
Q ss_pred HHHHHhhhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccCCCHHHHHHhhcCCCCCCCCCCCCCCccc
Q 001207 607 EILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIER 686 (1123)
Q Consensus 607 ~VLa~ME~~GI~VD~e~L~~l~~~l~~e~e~le~~i~~~~~~~~~~g~~fNi~S~kQl~~lLFe~~~~~k~~~l~lp~er 686 (1123)
+||++||.+||+||.+.|+++..++..+++.+++++++.+ |..||++||+||+++||+ ++|||.
T Consensus 147 ~vl~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~~------g~~fN~~Spkql~~~Lf~--------~lgl~~-- 210 (540)
T 4dfk_A 147 AVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA------GHPFNLNSRDQLERVLFD--------ELGLPA-- 210 (540)
T ss_dssp HHHHHHHHHCBEECHHHHHHHHHHHHHHHHHHHHHHHHHH------TSCCCTTCHHHHHHHHHT--------TSCCCC--
T ss_pred HHHHHHHhcCEEECHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCCCCCCHHHHHHHHHH--------hcCCCC--
Confidence 9999999999999999999999999999999999998874 678999999999999998 688753
Q ss_pred ccccCCCccccccCCCCCcccccchhcccccCCCCcccc-ccCCCCCcHHHH-HHHHhccCccccccCCCCCCCCCCCcc
Q 001207 687 IFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYT-ATGWPSVGGDAL-KTLARNISAEYDCVDGAHDLDDSGCTE 764 (1123)
Q Consensus 687 ~~k~~~~~~~~~~~kk~~~~~~~~~l~~~Gi~lp~~~~T-ktG~~St~~~vL-e~La~~~~~~~~~~~~~~~~~~~~~~~ 764 (1123)
.++| ||| +||+++|| +.|+..||+
T Consensus 211 -----------------------------------~~kt~ktg-~st~~~vL~e~L~~~~p~------------------ 236 (540)
T 4dfk_A 211 -----------------------------------IGKTEKTG-KRSTSAAVLEALREAHPI------------------ 236 (540)
T ss_dssp -----------------------------------CCBCTTTC-CBCCCHHHHHHTTTTCTH------------------
T ss_pred -----------------------------------CCCCCCCC-CCCcHHHHHHHhhhcChH------------------
Confidence 2357 789 99999999 999877653
Q ss_pred cccccccccccchhhhhHHHHHHHhHHHHHHHHHHhHhhhHhhhhcccccCCccCCCCeeeecccc-cCccccccccCCC
Q 001207 765 ETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPN 843 (1123)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lle~r~l~Kl~styi~~l~~~~i~~~dGRIH~~~n~-~T~TGRlSss~PN 843 (1123)
+..||+||+++|++|||+++|+. .+++.|||||++||| +|+||||||++||
T Consensus 237 ---------------------------~~~ile~R~l~Kl~sty~~~l~~-~v~~~~gRih~~~~q~~t~TGRlSs~~PN 288 (540)
T 4dfk_A 237 ---------------------------VEKILQYRELTKLKSTYIDPLPD-LIHPRTGRLHTRFNQTATATGRLSSSDPN 288 (540)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHTTTTGGG-GCCTTTCSBCCEEESSCCSSSCCEEESSC
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCEEeeeeecCcccccCccccCCc
Confidence 57799999999999999999996 455578999999998 8999999999999
Q ss_pred cccCCccccchhhhhceEEcCCCCeEEeecccchhHHHHHHhcCchhHHHHHHcCCchhHHHHhhhccccchhhccchhh
Q 001207 844 LQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923 (1123)
Q Consensus 844 LQNIP~~~~~g~~iR~~Fia~~G~~lVsaDySQIELRIlAhlS~D~~Li~af~~G~DIH~~tA~~if~~~~e~v~~~e~~ 923 (1123)
|||||++++.|++||+||+|++||+||++||||||||||||||+|+.|+++|++|.|||+.||+.+||++.+
T Consensus 289 lQniP~~~~~g~~iR~~f~a~~G~~lv~aDySqiElRvlAhls~D~~l~~af~~g~Dih~~tA~~~fg~~~~-------- 360 (540)
T 4dfk_A 289 LQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPRE-------- 360 (540)
T ss_dssp CSCCCCSSHHHHHHHTTEECCTTEEEEEEEETTHHHHHHHHHHCCHHHHHHHHTTCCHHHHHHHHHHTCCGG--------
T ss_pred ceeeeccCcchHhhhheEeCCCCCEEEEecHHHHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHcCCChh--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999997554
Q ss_pred hcccCCCCCCCCcccccchHHHHhhHHHhhhhhhCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhC
Q 001207 924 LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRID 1003 (1123)
Q Consensus 924 ~~w~~~~~~~v~~~~~vt~~~R~~AK~vnfGiiYG~G~~~LA~~lgiS~~EAk~~i~~f~~~yP~Vk~~~~~~~~~A~~~ 1003 (1123)
+|++++|+.||++|||++||||+++||+++|||.+||++++++||++||+|++|++.++++|+++
T Consensus 361 ---------------~v~~~~R~~aK~~~fg~~YG~~~~~La~~lgis~~eA~~~i~~~~~~~p~v~~~~~~~~~~a~~~ 425 (540)
T 4dfk_A 361 ---------------AVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRR 425 (540)
T ss_dssp ---------------GCCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHH
T ss_pred ---------------hcCHHHHhHHHHHHHhhhhCCchhHHHHHcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEecccCCcccCCCCCccChhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHHHHhhccCCceEEEEeeceEEEeCCcch
Q 001207 1004 NHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSES 1083 (1123)
Q Consensus 1004 GyV~Tl~GRrr~lp~~~s~n~~~r~~aeR~AvN~~IQGSAADI~K~AMi~i~~~~~l~~~g~~llLqVHDELv~EVp~~~ 1083 (1123)
|||+|++||||++|++++.|...|+.++|+|+|+|||||||||+|.||+++++. +.+.|++|++||||||+||||+++
T Consensus 426 Gyv~Tl~GRrr~~p~~~s~~~~~r~~aeR~a~N~~iQGsaAdi~K~ami~~~~~--l~~~~~~l~lqVHDElv~ev~~~~ 503 (540)
T 4dfk_A 426 GYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPR--LEEMGARMLLQVHDELVLEAPKER 503 (540)
T ss_dssp SEEECTTCCEEECGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTCEEEEECSSEEEEEEEGGG
T ss_pred CcEECCCCCeecCCccccccHHHHhhhhhhHhhhhhHhHHHHHHHHHHHHHHHH--HHhcCCeEEEEEcceEEEEeCHHH
Confidence 999999999999999999999999999999999999999999999999999984 444569999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcceeEEEeccccCChhhcC
Q 001207 1084 AEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123 (1123)
Q Consensus 1084 aeev~~~v~~~Me~a~~~~~~L~VPL~vd~~iG~nW~e~~ 1123 (1123)
+++++++|+++|++++ .|+|||.|++++|+||+|+|
T Consensus 504 ~~~~~~~v~~~Me~a~----~l~VPl~v~~~~G~~W~e~~ 539 (540)
T 4dfk_A 504 AEAVARLAKEVMEGVY----PLAVPLEVEVGIGEDWLSAK 539 (540)
T ss_dssp HHHHHHHHHHHHHTSS----CCSSCCCEEEEEESBHHHHH
T ss_pred HHHHHHHHHHHHhccc----CCCCceEEeeeecCCHHHhC
Confidence 9999999999999986 68999999999999999987
No 4
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=100.00 E-value=1.3e-109 Score=1030.75 Aligned_cols=524 Identities=29% Similarity=0.393 Sum_probs=466.9
Q ss_pred ceEEEeecccccccccCccccCcceEEEEeeeCCCcccCCCceEEEEeCCCCChhhhHhhhhhhhcCCCceEEEeccHHH
Q 001207 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFD 447 (1123)
Q Consensus 368 ~~VAfDTETtGLd~~~d~Ivg~g~ii~~sl~~~~~I~I~~~~~~~~ID~~~~~~~evl~~Lk~~Led~~i~KV~HNaKfD 447 (1123)
+.++|||||++ ++.+++| ++|++. + +..+|++. + . +.|+++|+|+.+ |+|||
T Consensus 305 ~~va~d~et~~--~~~~~l~-----vg~a~~--~-------g~a~yvp~-~----~--~~Lk~lLed~~i-----n~K~d 356 (832)
T 1bgx_T 305 AFVGFVLSRKE--PMWADLL-----ALAAAR--G-------GRVHRAPE-P----Y--KALRDLKEARGL-----LAKDL 356 (832)
T ss_dssp CCBEEECSSSC--TTTCCCC-----EEECBS--S-------SEEECCSC-H----H--HHHHHCSSBCBT-----THHHH
T ss_pred ceEEEEEecCC--cccCcee-----EEEEEc--C-------CCEEEEEC-C----H--HHHHHHHhCCCC-----ChHHH
Confidence 46999999998 5555551 233332 1 23567654 1 1 569999999874 99999
Q ss_pred HHHHHHcCCCCCCccchHHHHHHhcCCCCCCCCCCCHHHHhhcccccccccccccccccCCCCccccccccchhhhhccc
Q 001207 448 NHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR 527 (1123)
Q Consensus 448 l~vL~r~GI~l~~~vfDTmIAAyLLdp~~~~~gs~sLd~La~~~~~~~~~~Lg~~~~l~k~~~~eel~GK~s~k~lfgK~ 527 (1123)
+++|.++||.+. .+||||||+||++|. . |+|++|+.+| |+
T Consensus 357 ~~~L~~~Gi~~~-~~~Dt~laayLl~p~-~----~~l~~l~~~~---------------------------------gk- 396 (832)
T 1bgx_T 357 SVLALREGLGLP-PGDDPMLLAYLLDPS-N----TTPEGVARRY---------------------------------GG- 396 (832)
T ss_dssp HHHHHHHTCCCC-BCCCHHHHHHHHCTT-C----CSTTHHHHHH---------------------------------SC-
T ss_pred HHHHHHcCCccC-cccCHHHHHHHcCCC-C----CCHHHHHHHh---------------------------------CC-
Confidence 999999999998 899999999999997 4 8999999752 11
Q ss_pred ccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccCCCCCCCchHHHHHHHHhcchH
Q 001207 528 KLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLL-EMSWKLDGKPVPGKSMFDFYQEYWQPFG 606 (1123)
Q Consensus 528 k~kkq~s~~kdw~~~pl~~l~~~~~e~~l~YAA~DA~~tlrL~e~L~~kL~-e~~~~~~~~~~~~~~l~~Ly~~IEmPLv 606 (1123)
.|. + + || .||.++++|++.|.++|. + .+++++|.++||||+
T Consensus 397 ----------~~~--~---------~----ya-~da~~~~~l~~~l~~~L~~~------------~~~~~l~~~iE~pl~ 438 (832)
T 1bgx_T 397 ----------EWT--E---------E----AG-ERAALSERLFANLWGRLEGE------------ERLLWLYREVERPLS 438 (832)
T ss_dssp ----------CCC--S---------S----HH-HHHHHHHHHHHHHHHHHTTC------------HHHHHHHHTTHHHHH
T ss_pred ----------Cch--H---------H----HH-HHHHHHHHHHHHHHHHHhhh------------hhhHHHHHHHHHHHH
Confidence 010 1 1 77 699999999999999998 5 478999999999999
Q ss_pred HHHHHhhhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccCCCHHHHHHhhcCCCCCCCCCCCCCCccc
Q 001207 607 EILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIER 686 (1123)
Q Consensus 607 ~VLa~ME~~GI~VD~e~L~~l~~~l~~e~e~le~~i~~~~~~~~~~g~~fNi~S~kQl~~lLFe~~~~~k~~~l~lp~er 686 (1123)
+||++||++||+||.+.|+++..++..+++.++++++++ +|.+||++||+||+++||+ ++|||.
T Consensus 439 ~vl~~mE~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~------~g~~fN~~Spkql~~~Lf~--------~lglp~-- 502 (832)
T 1bgx_T 439 AVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRL------AGHPFNLNSRDQLERVLFD--------ELGLPA-- 502 (832)
T ss_dssp HHHHHHHHHCBCBCTTTHHHHHHHHHHHHHHHHHHHHHS------SSSCCCCSCHHHHTTTTTT--------SCCCCC--
T ss_pred HHHHHHHHcCeeecHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCcCCCCHHHHHHHHHH--------hcCCCC--
Confidence 999999999999999999999999999999999999766 5789999999999999998 678752
Q ss_pred ccccCCCccccccCCCCCcccccchhcccccCCCCcccc-ccCCCCCcHHHHHHHHhccCccccccCCCCCCCCCCCccc
Q 001207 687 IFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYT-ATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEE 765 (1123)
Q Consensus 687 ~~k~~~~~~~~~~~kk~~~~~~~~~l~~~Gi~lp~~~~T-ktG~~St~~~vLe~La~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1123)
.++| +||++||+++||++|+..||+
T Consensus 503 -----------------------------------~kkt~ktG~~sT~~~vL~~l~~~~p~------------------- 528 (832)
T 1bgx_T 503 -----------------------------------IGKTEKTGKRSTSAAVLEALREAHPI------------------- 528 (832)
T ss_dssp -----------------------------------CCSSCCSSSSGGGTSTTTTGGGTCST-------------------
T ss_pred -----------------------------------cccccccCCccchHHHHHHhHhcCcH-------------------
Confidence 2457 899999999999999876664
Q ss_pred ccccccccccchhhhhHHHHHHHhHHHHHHHHHHhHhhhHhhhhcccccCCccCCCCeeeecccc-cCccccccccCCCc
Q 001207 766 TEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNL 844 (1123)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lle~r~l~Kl~styi~~l~~~~i~~~dGRIH~~~n~-~T~TGRlSss~PNL 844 (1123)
++.||+||+++|++|||+++|+. .+.+.||||||+|+| +|+||||||++|||
T Consensus 529 --------------------------~~~ile~R~l~Kl~sty~~~l~~-~v~~~~gRih~~~~q~~t~TGRlSs~~PNL 581 (832)
T 1bgx_T 529 --------------------------VEKILQYRELTKLKSTYIDPLPD-LIHPRTGRLHTRFNQTATATGRLSSSDPNL 581 (832)
T ss_dssp --------------------------THHHHTHHHHSCSBTTBCCCTTT-SSCTTTCSBCCEEESSCCSSSCCEEESSCT
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHHH-hhCCCCCEEeeeeEecccceeeeecCCccc
Confidence 35699999999999999999996 455578999999998 99999999999999
Q ss_pred ccCCccccchhhhhceEEcCCCCeEEeecccchhHHHHHHhcCchhHHHHHHcCCchhHHHHhhhccccchhhccchhhh
Q 001207 845 QNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLL 924 (1123)
Q Consensus 845 QNIP~~~~~g~~iR~~Fia~~G~~lVsaDySQIELRIlAhlS~D~~Li~af~~G~DIH~~tA~~if~~~~e~v~~~e~~~ 924 (1123)
||||++++.|++||+||+|+|||+||+|||||||||||||||+|+.|+++|++|.|||+.||+.+||++.+
T Consensus 582 QNiP~~~~~g~~iR~~Fva~~G~~lv~aDySqiElRilAhls~D~~l~~af~~g~Dih~~tA~~~fg~~~e--------- 652 (832)
T 1bgx_T 582 QNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPRE--------- 652 (832)
T ss_dssp TSCCCSSTTTTTTGGGBCCCSSCCEEEEEESSHHHHHHHHTTTCTTHHHHHHHTCCHHHHHHHHHHTCCTT---------
T ss_pred cccccCchhhHHhhheEeCCCCCEEEEechhhhHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHhCCChh---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999997653
Q ss_pred cccCCCCCCCCcccccchHHHHhhHHHhhhhhhCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhCC
Q 001207 925 EWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDN 1004 (1123)
Q Consensus 925 ~w~~~~~~~v~~~~~vt~~~R~~AK~vnfGiiYG~G~~~LA~~lgiS~~EAk~~i~~f~~~yP~Vk~~~~~~~~~A~~~G 1004 (1123)
+|++++|+.||++|||++||||+++||+++|||.+||++++++||++||+|++|++++++.|+++|
T Consensus 653 --------------~vt~~~R~~aK~~nfgi~YG~~~~gLa~~lgis~~eA~~~i~~~~~~~p~v~~~~~~~~~~a~~~G 718 (832)
T 1bgx_T 653 --------------AVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRG 718 (832)
T ss_dssp --------------SCCTTHHHHHHHHHHHTTSCCCHHHHHHHSSCCHHHHHHHHHHHHHHCHHHHHHHHHHTHHHHTTS
T ss_pred --------------hcCHHHHHHHHHHHHhhhcCCchhHHHHHcCCCHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHCC
Confidence 467789999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecccCCcccCCCCCccChhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHHHHhhccCCceEEEEeeceEEEeCCcchH
Q 001207 1005 HVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPSESA 1084 (1123)
Q Consensus 1005 yV~Tl~GRrr~lp~~~s~n~~~r~~aeR~AvN~~IQGSAADI~K~AMi~i~~~~~l~~~g~~llLqVHDELv~EVp~~~a 1084 (1123)
||+|++||||++|++++.|...|+.++|+|+|+|||||||||+|.||+++++.+. +.+++|++||||||+||||++++
T Consensus 719 yv~Tl~GRrr~~p~i~s~~~~~r~~~eR~a~N~~iQGsAADiik~Ami~~~~~l~--~~~~~lvlqVHDElv~evp~~~~ 796 (832)
T 1bgx_T 719 YVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLE--EMGARMLLQVHDELVLEAPKERA 796 (832)
T ss_dssp SCCCSSCCCCCCGGGSCSSHHHHHHHHHHHTTHHHHTHHHHHHHTHHHHHHHHHH--HHTCEEEEEETTEEEEEC----C
T ss_pred eEEecCCCEEECCcccCCCcchhhhhhhhhccHhhHHHHHHHHHHHHHHHHHHHH--hCCCeEEEEeccEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999999999999999998543 35789999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCcceeEEEeccccCChhhcC
Q 001207 1085 EVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123 (1123)
Q Consensus 1085 eev~~~v~~~Me~a~~~~~~L~VPL~vd~~iG~nW~e~~ 1123 (1123)
++++++|+++|++++ .|+|||.|++++|+||+|+|
T Consensus 797 ~~~~~~v~~~M~~a~----~l~VPl~v~~~~G~~W~e~~ 831 (832)
T 1bgx_T 797 EAVARLAKEVMEGVY----PLAVPLEVEVGIGEDWLSAK 831 (832)
T ss_dssp HHHHHHHHHHHHSSS----CCSSCCCEECCEESSHHHHC
T ss_pred HHHHHHHHHHHhccC----CCCCeEEEecccCCCHHHhc
Confidence 999999999999986 58999999999999999997
No 5
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=100.00 E-value=2.1e-106 Score=991.23 Aligned_cols=578 Identities=20% Similarity=0.176 Sum_probs=467.8
Q ss_pred eEEEeecccccccccCccccCcceEEEEeeeCCCcccCCCceEEEEeCCCCChhhhHhhhhhhhcCCCceEEEecc-HHH
Q 001207 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNY-SFD 447 (1123)
Q Consensus 369 ~VAfDTETtGLd~~~d~Ivg~g~ii~~sl~~~~~I~I~~~~~~~~ID~~~~~~~evl~~Lk~~Led~~i~KV~HNa-KfD 447 (1123)
+|+|||||||+++..++| .++++.... ....+.+|+. ....+++.|+++|+ +.+.||+||+ +||
T Consensus 1 ~vv~D~ETtGl~~~~d~i------~~iqi~~~~------~~~~~~~~p~--~i~~~l~~L~~~l~-~~~~kV~HNa~kfD 65 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKF------HCGVIYDYS------TAEYVSYRPS--DFGAYLDALEAEVA-RGGLIVFHNGHKYD 65 (698)
T ss_dssp CEEEEEEESSCGGGCCCE------EEEEEEETT------TTEEEEECGG--GHHHHHHHHHHHHH-TTCCEEESSTTTTH
T ss_pred CEEEEcCCCCcCCCCCEE------EEEEEEecC------CCcEEEEChH--HHHHHHHHHHHHHh-cCCeEEEcCChHHH
Confidence 489999999999987665 456665421 1224445543 23456889999998 8889999999 999
Q ss_pred HHHHHHc-------CCCCC-CccchHHHHHHhcCCCCCCCCCCCHHHHhhcccccccccccccccccCCCCccccccccc
Q 001207 448 NHVLENY-------GLKVS-GFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKIS 519 (1123)
Q Consensus 448 l~vL~r~-------GI~l~-~~vfDTmIAAyLLdp~~~~~gs~sLd~La~~~~~~~~~~Lg~~~~l~k~~~~eel~GK~s 519 (1123)
+.+|.++ |+.++ +.+||||+||||++|... +|+|++|+.+|...+..-+++... ..|..
T Consensus 66 ~~~L~~~~~~~~~~Gi~l~~~~~~DTmlaayLL~p~~~---~~~L~~La~~~L~~sL~~~g~~lg----------~~Ki~ 132 (698)
T 1x9m_A 66 VPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLK---DTDMGLLRSGKLPGALEAWGYRLG----------EMKGE 132 (698)
T ss_dssp HHHHHHHHHHHHCCCCCCCGGGEEEHHHHHHHHTTTSC---CCTTTTSCGGGSCSCCCHHHHHHH----------HHHHH
T ss_pred HHHHHHhhhhcccCCccCCCCcchhHHHHHHHhCCCCC---CCCHHHHHHHHcccchhhhccccc----------ccccC
Confidence 9999876 99888 789999999999999764 699999998731000000022100 00122
Q ss_pred hhhhhc-----ccccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cCCCCCCCc
Q 001207 520 MKDIFG-----RRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWK--LDGKPVPGK 592 (1123)
Q Consensus 520 ~k~lfg-----K~k~kkq~s~~kdw~~~pl~~l~~~~~e~~l~YAA~DA~~tlrL~e~L~~kL~e~~~~--~~~~~~~~~ 592 (1123)
+.+++| +++.. +. +.+|...+ +.+..||+.||.++++|++.|.++|++.++. +++. ..
T Consensus 133 ~~~~~g~~~~~kg~~~-~~--~~~~~~~~---------~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~~l~~~~~---~~ 197 (698)
T 1x9m_A 133 YKDDFKRMLEEQGEEY-VD--GMEWWNFN---------EEMMDYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDV---GY 197 (698)
T ss_dssp HHHHHHHHHHHTTCCC-CT--TGGGTSCC---------HHHHHHHHHHHHHHHHHHHHHHTCTTTSCTTSCTTSS---CH
T ss_pred HHHHhCcccccccccc-cc--cCCccccC---------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc---cc
Confidence 334444 22110 10 11454322 4688999999999999999999999875321 0000 01
Q ss_pred hHH----HHHHHHhcchHHHHHHhhhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcC-----------------
Q 001207 593 SMF----DFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWAS-KHC----------------- 650 (1123)
Q Consensus 593 ~l~----~Ly~~IEmPLv~VLa~ME~~GI~VD~e~L~~l~~~l~~e~e~le~~i~~~~~-~~~----------------- 650 (1123)
.+. ++|.++||||++||++||++||+||.+.|+++..++..+++.+++++++.+. |+.
T Consensus 198 ~~~~~~~~l~~~~E~pl~~vLa~ME~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 277 (698)
T 1x9m_A 198 TTFWSESLEAVDIEHRAAWLLAKQERNGFPFDTKAIEELYVELAARRSELLRKLTETFGSWYQPKGGTEMFCHPRTGKPL 277 (698)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHCEEBCHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEECSCCBCCBCTTTCCBC
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHcCeEeCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhccccccchh
Confidence 222 6899999999999999999999999999999999999999999999998731 000
Q ss_pred ---------CCC------------------------------------ccccCCCHHHHHHhhcCCCCCCCCCCCCCCcc
Q 001207 651 ---------PDA------------------------------------KYMNVGSDTQLRQLLFGGKPNSKDDSESLPIE 685 (1123)
Q Consensus 651 ---------~~g------------------------------------~~fNi~S~kQl~~lLFe~~~~~k~~~l~lp~e 685 (1123)
.+| ..||++||+||+++||+ +|||
T Consensus 278 ~~~p~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fn~~S~~ql~~~L~~---------lgl~-- 346 (698)
T 1x9m_A 278 PKYPRIKTPKVGGIFKKPKNKAQREGREPCELDTREYVAGAPYTPVEHVVFNPSSRDHIQKKLQE---------AGWV-- 346 (698)
T ss_dssp TTSCCBBCCSSCCSBC-------------CCBCCCSBCTTCCBEEEEEECCCTTCHHHHHHHHHH---------TTCC--
T ss_pred cccccccccccccccccccccccccccccccccchhhccccccccccccccCCCCHHHHHHHHHH---------CCCC--
Confidence 134 68999999999999995 5664
Q ss_pred cccccCCCccccccCCCCCcccccchhcccccCCCCccccccCCCCCcHHHHHHHHhccCccccccCCCCCCCCCCCccc
Q 001207 686 RIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEE 765 (1123)
Q Consensus 686 r~~k~~~~~~~~~~~kk~~~~~~~~~l~~~Gi~lp~~~~TktG~~St~~~vLe~La~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1123)
+.++|+||+|||+++||+.|+.+.+
T Consensus 347 -----------------------------------~~~~t~~G~~st~~~vL~~l~~~~~-------------------- 371 (698)
T 1x9m_A 347 -----------------------------------PTKYTDKGAPVVDDEVLEGVRVDDP-------------------- 371 (698)
T ss_dssp -----------------------------------CCCBCTTSCBCCSHHHHHHCCCSCH--------------------
T ss_pred -----------------------------------CCCcCCCCCcCCCHHHHHHHHhhcc--------------------
Confidence 2357899999999999999975311
Q ss_pred ccccccccccchhhhhHHHHHHHhHHHHHHHHHHhHhhhHhhhh---cccccCCccCCCCeeeecccc-cCccccccccC
Q 001207 766 TEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI---LPLQGSNVSGKNGRVHCSLNI-NTETGRLSARR 841 (1123)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lle~r~l~Kl~styi---~~l~~~~i~~~dGRIH~~~n~-~T~TGRlSss~ 841 (1123)
+..+.++.|++||+++|++|||+ ++|+. .+.+|||||++||+ +|+||||||++
T Consensus 372 ---------------------~~~p~~~~lle~r~l~kl~sty~~~~~~l~~--~v~~dgrih~~~~~~gt~TGRlSs~~ 428 (698)
T 1x9m_A 372 ---------------------EKQAAIDLIKEYLMIQKRIGQSAEGDKAWLR--YVAEDGKIHGSVNPNGAVTGRATHAF 428 (698)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHTTSTTCHHH--HCCTTSEECCEEETTCSTTSCCEEES
T ss_pred ---------------------cCChHHHHHHHHHHHHHHHHhhhhhHHHHHH--hcCCCCeEeeeEEeccccccccccCC
Confidence 01345788999999999999999 78886 34578999999998 89999999999
Q ss_pred CCcccCCc-cccchhhhhceEEc--------CCCCeEEeecccchhHHHHHHhc---CchhHHHHHHcCCchhHHHHhhh
Q 001207 842 PNLQNQPA-LEKDRYKIRQAFIA--------VPGNSLIVADYGQLELRILAHLA---NCKSMLDAFKAGGDFHSRTAMNM 909 (1123)
Q Consensus 842 PNLQNIP~-~~~~g~~iR~~Fia--------~~G~~lVsaDySQIELRIlAhlS---~D~~Li~af~~G~DIH~~tA~~i 909 (1123)
|||||||+ +++.|++||+||+| +||++||+||||||||||||||| +|+.|+++|++| |||+.||+ +
T Consensus 429 PNlQniP~~~~~~g~~iR~~F~a~~~~~~~~~~G~~lv~aDySqiElRilAhls~~~~D~~l~~af~~g-DiH~~tA~-~ 506 (698)
T 1x9m_A 429 PNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHFMARFDNGEYAHEILNG-DIHTKNQI-A 506 (698)
T ss_dssp SCTTCCCCTTSTTHHHHHHTBSGGGSBCTTTCCBCEEEEEEETTHHHHHHHHHHHHHHTTHHHHHHHHS-CHHHHHHH-H
T ss_pred ccceeecccccccchhhhheeecCcccccCCCCCCEEEEEehhhhHHHHHHHHhhhcCcHHHHHHHhCC-CHhHHHHH-H
Confidence 99999999 88999999999999 99999999999999999999999 999999999999 99999999 9
Q ss_pred ccccchhhccchhhhcccCCCCCCCCcccccchHHHHhhHHHhhhhhhCCChhhhhhhcCCCHHHHHHHHHHHHHhChhH
Q 001207 910 YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEV 989 (1123)
Q Consensus 910 f~~~~e~v~~~e~~~~w~~~~~~~v~~~~~vt~~~R~~AK~vnfGiiYG~G~~~LA~~lgiS~~EAk~~i~~f~~~yP~V 989 (1123)
||+ | .|+.||++|||++||||+++||+++|||.+||++++++||++||+|
T Consensus 507 ~gv----------------------~--------~R~~aK~~nfg~~YG~g~~~La~~lgis~~eA~~~i~~~~~~~p~v 556 (698)
T 1x9m_A 507 AEL----------------------P--------TRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAI 556 (698)
T ss_dssp SCC----------------------S--------SHHHHHHHHHHHHTTCCHHHHHTTTTCCHHHHHHHHHHHHHTCHHH
T ss_pred hCC----------------------c--------hHhhhHHHHHccccCCCHHHHHHHcCCCHHHHHHHHHHHHHHCcCH
Confidence 984 1 2999999999999999999999999999999999999999999999
Q ss_pred HHH--------------HHHHHHHHHhCCeEecccCCcccCCCCCccChhhhhhhhhhhhhhhhhchHHHHHHHHHHHHH
Q 001207 990 LTW--------------QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055 (1123)
Q Consensus 990 k~~--------------~~~~~~~A~~~GyV~Tl~GRrr~lp~~~s~n~~~r~~aeR~AvN~~IQGSAADI~K~AMi~i~ 1055 (1123)
+.| ++.+++.|+++|||+|++||||++. + +|+|+|+|||||||||+|.||++++
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~gyv~tl~GRrr~~r----------~--~r~a~N~~iQGsaAdi~k~am~~i~ 624 (698)
T 1x9m_A 557 AALRESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVR----------S--PHAALNTLLQSAGALICKLWIIKTE 624 (698)
T ss_dssp HHHHHHHHHTTBC----------CCBSCSEEECTTSCEEECS----------C--GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhhhhhhhhHHHHHHHHHHhCCeEEccCCCeeecc----------c--hhhHhhhhhhHHHHHHHHHHHHHHH
Confidence 999 7777788889999999999999983 2 7999999999999999999999999
Q ss_pred HHHhhccC------CceEEEEeeceEEEeCCcch-HHHHHHHHHHHHcCCCCCCCCcceeEEEeccccCChhhcC
Q 001207 1056 KNARLKEL------GWKLLLQVHDEVILEGPSES-AEVAKAIVVECMSKPFNGKNNLRVDLSVDAKCAQNWYSAK 1123 (1123)
Q Consensus 1056 ~~~~l~~~------g~~llLqVHDELv~EVp~~~-aeev~~~v~~~Me~a~~~~~~L~VPL~vd~~iG~nW~e~~ 1123 (1123)
+.+...++ +++|++||||||+||||+++ +++++++|+++|+++.. .+.++|||.||+++|+||+|||
T Consensus 625 ~~l~~~~~~~~~~~~~~lvl~VHDElv~ev~~~~~~~~~~~~~~~~M~~a~~-~~~l~vPl~~~~~~G~~W~~~~ 698 (698)
T 1x9m_A 625 EMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGD-HWNFRCLLDTEGKMGPNWAICH 698 (698)
T ss_dssp HHHHHTTCCBSTTSSEEEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHHHH-HTTCSSCCCEEEEEESSTTTTC
T ss_pred HHHHhcCCCcccCcceeEEEEeccEEEEEecchhHHHHHHHHHHHHHHhhhh-ccCCCeeEEEecccCcCHHhcC
Confidence 86544445 67999999999999999998 99999999999999842 1258999999999999999998
No 6
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=100.00 E-value=6.2e-44 Score=435.48 Aligned_cols=234 Identities=18% Similarity=0.176 Sum_probs=194.3
Q ss_pred CCCeeeecccc-cCccccccccCCCcccCCccccchhhhhceEEcCCCCeEEeecccchhHHHHHHhcCchhH-------
Q 001207 820 KNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM------- 891 (1123)
Q Consensus 820 ~dGRIH~~~n~-~T~TGRlSss~PNLQNIP~~~~~g~~iR~~Fia~~G~~lVsaDySQIELRIlAhlS~D~~L------- 891 (1123)
..||||+.+++ ||+|||..++.||..+.|.....|++||+||+|++||+||+|||||||||| ||+++|+.|
T Consensus 769 ~~g~I~p~v~~~GtvT~Ra~~~~~~tas~~~~~~~GreiR~aFva~~G~~lvsADySQIELRI-Aals~D~~l~~~~g~~ 847 (1172)
T 3ikm_A 769 LYGAILPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWI-AAVLGDAHFAGMHGCT 847 (1172)
T ss_dssp CCCBCCCCCCSSCTTTCCCCCTTGGGCCCCSSCSTTSCCHHHHCCCTTEEEEEEECTTHHHHH-HHHHHHHHSSSTTCST
T ss_pred cCceeeeeeeecCccccccccCCcceecCCCCChhhHHhHheEeCCCCCEEEEecccHHHHHH-HHHcCChhhccccccc
Confidence 46999999998 999999888888877777777778899999999999999999999999998 889999988
Q ss_pred -------HHHHHcCCchhHHHHhhhccccchhhccchhhhcccCCCCCCCCcccccchHHHHhhHHHhhhhhhCCCh---
Q 001207 892 -------LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP--- 961 (1123)
Q Consensus 892 -------i~af~~G~DIH~~tA~~if~~~~e~v~~~e~~~~w~~~~~~~v~~~~~vt~~~R~~AK~vnfGiiYG~G~--- 961 (1123)
+.+|.+|.|||+.||+.+ |+ .|+.||++|||+|||||+
T Consensus 848 A~~~~~L~~af~~g~DIH~~TA~~v-gi-------------------------------~Rr~AK~vNFGiIYG~g~~~a 895 (1172)
T 3ikm_A 848 AFGWMTLQGRKSRGTDLHSKTATTV-GI-------------------------------SREHAKIFNYGRIYGAGQPFA 895 (1172)
T ss_dssp TTTTTCSCCTTTCTHHHHHHHHHTT-CC-------------------------------CSHHHHHHHHHHHHSCCTHHH
T ss_pred chhhhhhhhhhccCCcHHHHHHHHh-CC-------------------------------ChhhchheeeehhcCCchHHH
Confidence 456899999999999976 42 299999999999999997
Q ss_pred hhhhhhcC--CCHHHHHHHHHHHHHhChhHHHHHH-----HHHH------HHHhCCeEe--------------------c
Q 001207 962 VGLARDWK--VSVEEAKKTVDLWYNERQEVLTWQE-----ARKK------ESRIDNHVH--------------------T 1008 (1123)
Q Consensus 962 ~~LA~~lg--iS~~EAk~~i~~f~~~yP~Vk~~~~-----~~~~------~A~~~GyV~--------------------T 1008 (1123)
++|++++| ||.+||+++|++||++||+|+.|+. .... .+.++||+. +
T Consensus 896 ~gL~~ql~~~is~~eAk~~i~~yf~~y~gv~~y~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~r~~~~~~~~~s~~~~~~ 975 (1172)
T 3ikm_A 896 ERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKWE 975 (1172)
T ss_dssp HHHHHHHSCTTHHHHHHHHHHHHHHHHHCSSSSCSSSCHHHHHHHHHSSSSCCCCSSCCCCCCCHHHHSCSSSCHHHHTT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhCcChhhhhhccccchhhhhccccccccccccchhhhhhhhhhcccccccccccc
Confidence 99999988 9999999999999999999998741 1111 134567766 6
Q ss_pred ccCCcccCCCCCc---------------cCh-------------hhhhhhhhhhhhhhhhchHHHHHHHHHHHHHHHHhh
Q 001207 1009 LLGRARRFPAIKS---------------LTR-------------SQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060 (1123)
Q Consensus 1009 l~GRrr~lp~~~s---------------~n~-------------~~r~~aeR~AvN~~IQGSAADI~K~AMi~i~~~~~l 1060 (1123)
++||++++.+..| +.. ..++...|+++|++|||||+|++|++||.++..+..
T Consensus 976 ~~~r~~w~GGtES~mFNkLE~iA~s~~P~TP~LGc~It~AL~~~~~~~~~~~sriNw~iQsSa~D~lhl~~v~m~~l~~~ 1055 (1172)
T 3ikm_A 976 VVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEE 1055 (1172)
T ss_dssp TTTTHHHHHHHHHHHHSCSSSSSCCSSSCCCC---------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccceecCChhHHHHHHHHHHhccCCCCCCcccchhhhhhCccccccchhhhhhchhccchHHHHHHHHHHHHHHHHHH
Confidence 8888876522111 111 134556789999999999999999999999976555
Q ss_pred ccCCceEEEEeeceEEEeCCcchHHH
Q 001207 1061 KELGWKLLLQVHDEVILEGPSESAEV 1086 (1123)
Q Consensus 1061 ~~~g~~llLqVHDELv~EVp~~~aee 1086 (1123)
.+..++|++||||||+|+|++++.-.
T Consensus 1056 ~~l~ar~~l~vHDEl~~~v~~~dkyR 1081 (1172)
T 3ikm_A 1056 FAIDGRFCISIHDEVRYLVREEDRYR 1081 (1172)
T ss_dssp SSCCCBCCCCBTTEEEEEEESTTHHH
T ss_pred hCCCceEEEEEcceEEEeccHHHHHH
Confidence 66789999999999999999987643
No 7
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.80 E-value=4.5e-19 Score=203.32 Aligned_cols=208 Identities=15% Similarity=0.102 Sum_probs=156.3
Q ss_pred CeEEecCHHHHHHHHHHHHccccCceEEEeecccccccccCccccCcceEEEEeeeCCCcccCCCceEEEEeCCCCChhh
Q 001207 344 NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRD 423 (1123)
Q Consensus 344 ~y~lV~t~e~L~~lv~~L~~a~~~~~VAfDTETtGLd~~~d~Ivg~g~ii~~sl~~~~~I~I~~~~~~~~ID~~~~~~~e 423 (1123)
+|.+|++.+++.++++.+... ++++||||+++.+++.+.+++ +++..+ +..+++|+... .
T Consensus 2 ~~~~I~t~~~l~~~~~~l~~~---~~va~D~E~~~~~~~~~~l~l------iqla~~--------~~~~lid~~~l---~ 61 (375)
T 1yt3_A 2 NYQMITTDDALASLCEAVRAF---PAIALDTEFVRTRTYYPQLGL------IQLFDG--------EHLALIDPLGI---T 61 (375)
T ss_dssp CCEEECSHHHHHHHHHHHTTS---SEEEEEEEEECCSCSSCEEEE------EEEECS--------SCEEEECGGGC---S
T ss_pred CeEEeCCHHHHHHHHHHHcCC---CeEEEEeeecCCCcCCCceEE------EEEecC--------CcEEEEeCCCC---C
Confidence 578999999999999988664 589999999998877666543 444322 23566664322 1
Q ss_pred hHhhhhhhhcCCCceEEEeccHHHHHHHHH-cCCCCCCccchHHHHHHhcCCCCCCCCCCCHHHHhhccccccccccccc
Q 001207 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLEN-YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502 (1123)
Q Consensus 424 vl~~Lk~~Led~~i~KV~HNaKfDl~vL~r-~GI~l~~~vfDTmIAAyLLdp~~~~~gs~sLd~La~~~~~~~~~~Lg~~ 502 (1123)
.++.|+++|+|+.+.||+||+++|+.+|.+ +|+.+. .+|||++|+|++++.. ++||++|+++ ++++.
T Consensus 62 ~~~~L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~Gi~~~-~~fDt~lAa~lL~~~~----~~~L~~L~~~-------~l~~~ 129 (375)
T 1yt3_A 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQ-PLIDTQILAAFCGRPM----SWGFASMVEE-------YSGVT 129 (375)
T ss_dssp CCHHHHHHHHCTTSEEEESSCHHHHHHHHHHHSSCCS-SEEEHHHHHHHTTCCT----TCCHHHHHHH-------HHCCC
T ss_pred ChHHHHHHHcCCCceEEEeeHHHHHHHHHHHcCCCCC-cEEEcHHHHHHcCCCC----ChhHHHHHHH-------HcCCC
Confidence 456799999999999999999999999986 899886 6899999999999853 5999999987 55543
Q ss_pred ccccCCCCccccccccchhhhhcccccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001207 503 KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW 582 (1123)
Q Consensus 503 ~~l~k~~~~eel~GK~s~k~lfgK~k~kkq~s~~kdw~~~pl~~l~~~~~e~~l~YAA~DA~~tlrL~e~L~~kL~e~~~ 582 (1123)
+ .|+. +. .+|..+|++ +.+..|||.||.++++||+.|.++|++.
T Consensus 130 --l-------------------~K~~---~~---sdw~~rpL~-------~~q~~YAa~Da~~l~~L~~~L~~~L~~~-- 173 (375)
T 1yt3_A 130 --L-------------------DKSE---SR---TDWLARPLT-------ERQCEYAAADVWYLLPITAKLMVETEAS-- 173 (375)
T ss_dssp --C-------------------CCTT---TT---SCTTSSSCC-------HHHHHHHHHHHHTHHHHHHHHHHHHHHT--
T ss_pred --C-------------------CCCc---cc---CCCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 1 0111 11 278888874 4689999999999999999999999874
Q ss_pred ccCCCCCCCchHHHH-HHHHhcchHHHHHHhhh-------cC-cccCHHHHHHHHH
Q 001207 583 KLDGKPVPGKSMFDF-YQEYWQPFGEILVKMET-------EG-MLVDREYLSEIEK 629 (1123)
Q Consensus 583 ~~~~~~~~~~~l~~L-y~~IEmPLv~VLa~ME~-------~G-I~VD~e~L~~l~~ 629 (1123)
++.++ |+++|+|+..+...+.. .| ..++...+..++.
T Consensus 174 ----------g~~~l~~~e~E~pl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (375)
T 1yt3_A 174 ----------GWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQL 219 (375)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHCCCCGGGGGGGSTTGGGSCHHHHHHHHH
T ss_pred ----------CcHHHHHHHHHHHHhhcccCCCchHHHHhccCcccCCHHHHHHHHH
Confidence 55666 99999999998754322 23 3445555544443
No 8
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.76 E-value=3.7e-18 Score=198.62 Aligned_cols=173 Identities=21% Similarity=0.187 Sum_probs=139.7
Q ss_pred CCeEEecCHHHHHHHHHHHHccccCceEEEeecccccccccCccccCcceEEEEeeeCCCcccCCCceEEEEeCCCCChh
Q 001207 343 SNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGR 422 (1123)
Q Consensus 343 ~~y~lV~t~e~L~~lv~~L~~a~~~~~VAfDTETtGLd~~~d~Ivg~g~ii~~sl~~~~~I~I~~~~~~~~ID~~~~~~~ 422 (1123)
..|.+|+++++|.++++.+... +.+|||||+++.+++.+.+++ +++... +..+++|+... .
T Consensus 108 ~~y~~I~t~e~L~~~l~~L~~~---~~vavDtE~~~~~~~~~~l~l------IQLa~~--------~~~~lidpl~l--~ 168 (428)
T 3saf_A 108 TPCHFISSLDELVELNEKLLNC---QEFAVNLEHHSYRSFLGLTCL------MQISTR--------TEDFIIDTLEL--R 168 (428)
T ss_dssp SCEEEECSHHHHHHHHHHHTTC---SEEEEEEEEECTTCSSCEEEE------EEEECS--------SCEEEEETTTT--G
T ss_pred CCcEEECCHHHHHHHHHHHhcC---CeEEEEEEecCCCCCCCeEEE------EEEEeC--------CcEEEEEeccc--h
Confidence 3588999999999999999875 589999999999988776654 444332 23678887643 2
Q ss_pred hhHhhhhhhhcCCCceEEEeccHHHHHHHH-HcCCCCCCccchHHHHHHhcCCCCCCCCCCCHHHHhhcccccccccccc
Q 001207 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLE-NYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAY 501 (1123)
Q Consensus 423 evl~~Lk~~Led~~i~KV~HNaKfDl~vL~-r~GI~l~~~vfDTmIAAyLLdp~~~~~gs~sLd~La~~~~~~~~~~Lg~ 501 (1123)
.++..|+++|+|+.+.||+||+++|+.+|. .+|+.+.+ +||||+|+|++++. .+||++|+++ +|++
T Consensus 169 ~~l~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~-~fDT~lAa~lL~~~-----~~gL~~Lv~~-------~Lg~ 235 (428)
T 3saf_A 169 SDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVN-MFDTHQAARLLNLG-----RHSLDHLLKL-------YCNV 235 (428)
T ss_dssp GGGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSS-EEEHHHHHHHTTCS-----CCSHHHHHHH-------HHCC
T ss_pred hhHHHHHHHHcCCCceEEEeehHHHHHHHHHHcCCCcCc-eeechhHHHHhCCC-----CCCHHHHHHH-------HcCC
Confidence 467889999999999999999999999995 79998755 89999999999975 3899999987 6765
Q ss_pred cccccCCCCccccccccchhhhhcccccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001207 502 QKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMS 581 (1123)
Q Consensus 502 ~~~l~k~~~~eel~GK~s~k~lfgK~k~kkq~s~~kdw~~~pl~~l~~~~~e~~l~YAA~DA~~tlrL~e~L~~kL~e~~ 581 (1123)
. + + |+. +. .+|..+|++ +.+..|||.||.++++||+.|.++|.+.+
T Consensus 236 ~--l----------~---------K~~---~~---sdW~~rpLs-------~~q~~YAA~DA~~ll~L~~~L~~~L~~~g 281 (428)
T 3saf_A 236 D--S----------N---------KQY---QL---ADWRIRPLP-------EEMLSYARDDTHYLLYIYDKMRLEMWERG 281 (428)
T ss_dssp C--C----------C---------CTT---TT---SCTTCSSCC-------HHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred C--C----------C---------ccc---cc---cccccCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4 1 1 111 11 279999874 57899999999999999999999998753
No 9
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.72 E-value=1.8e-17 Score=174.56 Aligned_cols=182 Identities=17% Similarity=0.144 Sum_probs=132.8
Q ss_pred hhhccCCCeEEecCHHHHHHHH----HHHHccccCceEEEeeccccc--ccccCccccCcceEEEEeeeCCCcccCCCce
Q 001207 337 KLASFYSNVMVVDNVSAAKKVV----WMLTNKYKHLVHACDTEVAKI--DVKQETPVDHGEVICFSIYSGPEADFGNGKS 410 (1123)
Q Consensus 337 ~l~~~p~~y~lV~t~e~L~~lv----~~L~~a~~~~~VAfDTETtGL--d~~~d~Ivg~g~ii~~sl~~~~~I~I~~~~~ 410 (1123)
|...++.++.+|++++++..++ +.+... ++++||+|+++. +++.+.+++ ++++.. .+.
T Consensus 9 p~~~f~g~i~~i~~~~~~~~~~~~~~~~l~~~---~~v~~D~E~~~~~~~~~~~~~~~------iqla~~-------~~~ 72 (208)
T 2e6m_A 9 PFLEFPGSIVYSYEASDCSFLSEDISMRLSDG---DVVGFDMEWPPIYKPGKRSRVAV------IQLCVS-------ESK 72 (208)
T ss_dssp CBCCCCSEEEEECSHHHHHHHHHHHHHHCCTT---CEEEEEEECCC---CCSCCCCCE------EEEECS-------SSE
T ss_pred CccccCCcEEEEeCHHHHHHHHHHHHHHhccC---CEEEEEeecCCCCCCCCCCCeEE------EEEecC-------CCe
Confidence 4556778899999999999544 444442 579999999987 555555543 443321 124
Q ss_pred EEEEeCCCCChhhhHhhhhhhhcCCCceEEEeccHHHHHHHHH-cCCCCCCccch-HHHHHHhcCCCCCCCCCCCHHHHh
Q 001207 411 CIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN-YGLKVSGFHAD-TMHMARLWDSSRRTEGGYSLEALT 488 (1123)
Q Consensus 411 ~~~ID~~~~~~~evl~~Lk~~Led~~i~KV~HNaKfDl~vL~r-~GI~l~~~vfD-TmIAAyLLdp~~~~~gs~sLd~La 488 (1123)
++|+|.... ....+.|+++|+|+.+.||+||+|+|+++|.+ +|+.+.+ +|| ||+|+||++|.. +++|++|+
T Consensus 73 ~~~i~~~~~--~~~~~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~-~fDlt~lAayll~~~~----~~~L~~L~ 145 (208)
T 2e6m_A 73 CYLFHISSM--SVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLES-FVELTDVANEKLKCAE----TWSLNGLV 145 (208)
T ss_dssp EEEECGGGC--SSCCHHHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCS-EEEHHHHHHHHTTCCC----CCCHHHHH
T ss_pred EEEEECccc--ccchHHHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCC-EEEHHHHHHHHccCCC----ChhHHHHH
Confidence 677765432 12456799999999999999999999999987 8999988 999 999999999843 59999999
Q ss_pred hcccccccccccccccccCCCCccccccccchhhhhcccccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHH
Q 001207 489 GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLK 568 (1123)
Q Consensus 489 ~~~~~~~~~~Lg~~~~l~k~~~~eel~GK~s~k~lfgK~k~kkq~s~~kdw~~~pl~~l~~~~~e~~l~YAA~DA~~tlr 568 (1123)
.+ +|++. + . | +|.. +. .+|..+|++ +.+..|||.||.++++
T Consensus 146 ~~-------~l~~~--~---------~-K-------~k~~---~~---s~W~~~~L~-------~~q~~YAa~Da~~~~~ 186 (208)
T 2e6m_A 146 KH-------VLGKQ--L---------L-K-------DKSI---RC---SNWSNFPLT-------EDQKLYAATDAYAGLI 186 (208)
T ss_dssp HH-------HHSCB--C---------C-C-------CHHH---HT---SCTTSSSCC-------HHHHHHHHHHHHHHHH
T ss_pred HH-------HcCCC--c---------C-C-------CCCe---ee---CCCCCCCCC-------HHHHHHHHHHHHHHHH
Confidence 87 55543 1 0 1 1110 11 279888874 5689999999999999
Q ss_pred HHHHHHHHHhhc
Q 001207 569 LYKSLKKKLLEM 580 (1123)
Q Consensus 569 L~e~L~~kL~e~ 580 (1123)
|++.|.++|++.
T Consensus 187 L~~~L~~~L~~~ 198 (208)
T 2e6m_A 187 IYQKLGNLGDTV 198 (208)
T ss_dssp HHHHHHTCC---
T ss_pred HHHHHHhccchh
Confidence 999999999874
No 10
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.69 E-value=1.9e-16 Score=183.69 Aligned_cols=171 Identities=24% Similarity=0.231 Sum_probs=134.0
Q ss_pred CeEEecCHHHHHHHHHHHHccccCceEEEeecccccccccCccccCcceEEEEeeeCCCcccCCCceEEEEeCCCCChhh
Q 001207 344 NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRD 423 (1123)
Q Consensus 344 ~y~lV~t~e~L~~lv~~L~~a~~~~~VAfDTETtGLd~~~d~Ivg~g~ii~~sl~~~~~I~I~~~~~~~~ID~~~~~~~e 423 (1123)
.+.+|++.+++.++++.|... +.|+||||+++.+++.+.+++ +++..+ +..+++|.... ..
T Consensus 86 ~~~~I~t~~~L~~~~~~L~~~---~~vavDtE~~~~~~~~~~l~l------iQla~~--------~~~ylid~l~l--~~ 146 (410)
T 2hbj_A 86 VPIWVDTSTELESMLEDLKNT---KEIAVDLEHHDYRSYYGIVCL------MQISTR--------ERDYLVDTLKL--RE 146 (410)
T ss_dssp CCEEECSHHHHHHHHHHHTTC---SEEEEEEEEECSSSSSCEEEE------EEEECS--------SCEEEEETTTT--TT
T ss_pred CcEEeCCHHHHHHHHHHHhhC---CceEEEeeecCCcCCCCcEEE------EEEEEC--------CcEEEEechhh--hh
Confidence 467899999999999988764 589999999998776655543 444322 23566775432 23
Q ss_pred hHhhhhhhhcCCCceEEEeccHHHHHHHHH-cCCCCCCccchHHHHHHhcCCCCCCCCCCCHHHHhhccccccccccccc
Q 001207 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLEN-YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502 (1123)
Q Consensus 424 vl~~Lk~~Led~~i~KV~HNaKfDl~vL~r-~GI~l~~~vfDTmIAAyLLdp~~~~~gs~sLd~La~~~~~~~~~~Lg~~ 502 (1123)
.+..|+++|+|+.+.||+||+++|+.+|.+ +|+.+.+ +||||+|+||+++. ++||+.|+.+ +|++.
T Consensus 147 ~l~~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi~~~~-~fDt~lAa~LL~~~-----~~~L~~L~~~-------~lg~~ 213 (410)
T 2hbj_A 147 NLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVG-LFDTYHASKAIGLP-----RHSLAYLLEN-------FANFK 213 (410)
T ss_dssp TGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSS-EEEHHHHHHHHTCS-----CCSHHHHHHH-------HSCCC
T ss_pred hHHHHHHHHcCCCceEEEEehHHHHHHHHHHcCCCcCC-EEEcHHHHHHhCCC-----ccCHHHHHHH-------HcCCC
Confidence 567899999999999999999999999977 8999887 99999999999986 3899999987 55543
Q ss_pred ccccCCCCccccccccchhhhhcccccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001207 503 KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEM 580 (1123)
Q Consensus 503 ~~l~k~~~~eel~GK~s~k~lfgK~k~kkq~s~~kdw~~~pl~~l~~~~~e~~l~YAA~DA~~tlrL~e~L~~kL~e~ 580 (1123)
+ +|+. +. .+|..+|++ +.+..|||.||.++++||+.|.++|++.
T Consensus 214 --l-------------------~K~~---~~---sdW~~rpL~-------~~q~~YAa~Da~~ll~L~~~L~~~L~~~ 257 (410)
T 2hbj_A 214 --T-------------------SKKY---QL---ADWRIRPLS-------KPMTAAARADTHFLLNIYDQLRNKLIES 257 (410)
T ss_dssp --C-------------------CCTT---TT---SCTTCSSCC-------HHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred --C-------------------Cccc---cc---cCCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 1221 11 279888874 4689999999999999999999999874
No 11
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.51 E-value=7.1e-14 Score=163.57 Aligned_cols=176 Identities=18% Similarity=0.128 Sum_probs=131.4
Q ss_pred hhhhccCCCeEEecCHHHHHHHHHHHHccccCceEEEeecccccccccCccccCcceEEEEeeeCCCcccCCCceEEEEe
Q 001207 336 SKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVD 415 (1123)
Q Consensus 336 ~~l~~~p~~y~lV~t~e~L~~lv~~L~~a~~~~~VAfDTETtGLd~~~d~Ivg~g~ii~~sl~~~~~I~I~~~~~~~~ID 415 (1123)
.+.+..| .+|++.+++.++++.+... .+.|+||||+++.+++.+.+++ ++|+.. . ...+|||
T Consensus 12 ~p~~~~~---~~I~t~e~L~~~~~~L~~~--~~~vavDtE~~~~~~~~~~l~l----iQla~~--~-------~~~~lid 73 (440)
T 3cym_A 12 EPREGVP---NVIDTLPAFRDYCSELASS--HGSLAADAERASGFRYGHEDWL----VQFKRD--G-------AGIGLLD 73 (440)
T ss_dssp SCTTCCC---CEECSHHHHHHHHHHHHSC--EEEEEEEEEECTTTSSSCCEEE----EEEEEE--T-------TEEEEEC
T ss_pred CCCCCCC---EeeCCHHHHHHHHHHHHhc--CCeEEEEeeecCCCCCCCCEEE----EEEEEC--C-------CcEEEEE
Confidence 3444444 4899999999999988663 1579999999988776666553 334332 1 2367777
Q ss_pred CCCCChh---hhHhhhhhhhcCCCceEEEeccHHHHHHHHHcCCCCCCccchHHHHHHhcCCCCCCCCCCCHHHHhhccc
Q 001207 416 LLDGGGR---DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRK 492 (1123)
Q Consensus 416 ~~~~~~~---evl~~Lk~~Led~~i~KV~HNaKfDl~vL~r~GI~l~~~vfDTmIAAyLLdp~~~~~gs~sLd~La~~~~ 492 (1123)
... .. ..+..|+++|+|+ .||+|++++|+.+|..+|+.+. .+|||++|+|++++. ++||+.|++.
T Consensus 74 ~l~--~~~~~~~l~~L~~lL~d~--~KV~h~~k~Dl~~L~~~gi~~~-~~fDt~lAa~lL~~~-----~~gL~~L~~~-- 141 (440)
T 3cym_A 74 PQA--LAAAGADWNDFNRAVGDA--VWILHDSLQDLPGFDELGMEPQ-RLFDTEIAARLLGLK-----RFGLAAVTEH-- 141 (440)
T ss_dssp HHH--HHHTTCCHHHHHHHHTTC--EEEESSHHHHHHHHHHHTCCCC-EEEEHHHHHHHTTCS-----SCSHHHHHHH--
T ss_pred cCC--ccccccCHHHHHHHHCCC--CEEEEcCHHHHHHHHHcCCcCC-ceehHHHHHHHhCCC-----CCCHHHHHHH--
Confidence 521 01 1356899999996 6999999999999988899886 689999999999984 4999999987
Q ss_pred ccccccccccccccCCCCccccccccchhhhhcccccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 001207 493 VMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKS 572 (1123)
Q Consensus 493 ~~~~~~Lg~~~~l~k~~~~eel~GK~s~k~lfgK~k~kkq~s~~kdw~~~pl~~l~~~~~e~~l~YAA~DA~~tlrL~e~ 572 (1123)
++++. +. |+. +. .+|..+|++ +.+..|||.||.++++||+.
T Consensus 142 -----~lg~~--~~-------------------K~~---~~---sdw~~rpLs-------~~q~~YAa~Da~~Ll~L~~~ 182 (440)
T 3cym_A 142 -----FLGLT--LA-------------------KEH---SA---ADWSYRPLP-------RDWRNYAALDVELLIELETK 182 (440)
T ss_dssp -----HHCEE--CC-------------------CCC---TT---CCTTCSSCC-------HHHHHHHHHHHHTHHHHHHH
T ss_pred -----HhCCC--cc-------------------ccc---cc---CCCcCCCCC-------HHHHHHHHHHHHHHHHHHHH
Confidence 55543 10 111 11 268888874 46899999999999999999
Q ss_pred HHHHHhhc
Q 001207 573 LKKKLLEM 580 (1123)
Q Consensus 573 L~~kL~e~ 580 (1123)
|..+|.+.
T Consensus 183 L~~~L~~~ 190 (440)
T 3cym_A 183 MRAELKRQ 190 (440)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99999874
No 12
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.37 E-value=1.2e-12 Score=138.67 Aligned_cols=170 Identities=11% Similarity=0.014 Sum_probs=114.6
Q ss_pred EEecCHHHHHHHHHHHHcc---ccCceEEEeecccccc------ccc--CccccCcceEEEEeeeCCCcccCCCceEEEE
Q 001207 346 MVVDNVSAAKKVVWMLTNK---YKHLVHACDTEVAKID------VKQ--ETPVDHGEVICFSIYSGPEADFGNGKSCIWV 414 (1123)
Q Consensus 346 ~lV~t~e~L~~lv~~L~~a---~~~~~VAfDTETtGLd------~~~--d~Ivg~g~ii~~sl~~~~~I~I~~~~~~~~I 414 (1123)
..|.+.+++..+++.+... ....+|+||||+.... .+. +++ ..++++. +..++.+
T Consensus 22 ~~v~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~------~LiQla~--------~~~~~l~ 87 (206)
T 1vk0_A 22 IDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSL------SSVKLST--------RNLCLFL 87 (206)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEE------EEEEEEC--------SSEEEEE
T ss_pred EEEecHHHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCce------EEEEEec--------CCCeEEE
Confidence 4567777777777766221 0125899999998432 122 122 2344443 3445666
Q ss_pred eCCCCChhhhHhhhhhhhcCCCceEEEeccHHHHHHHHH-cCCCCCCccchHH-HHHHhcCCC-CCCCCCCCHHHHhhcc
Q 001207 415 DLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN-YGLKVSGFHADTM-HMARLWDSS-RRTEGGYSLEALTGDR 491 (1123)
Q Consensus 415 D~~~~~~~evl~~Lk~~Led~~i~KV~HNaKfDl~vL~r-~GI~l~~~vfDTm-IAAyLLdp~-~~~~gs~sLd~La~~~ 491 (1123)
+... .....+..|+++|+|+.+.||+|++++|+..|++ +|+.+. .+|||. +|+.+++.. .. .+||+.|+++
T Consensus 88 ~l~~-~~~~~L~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~-~~~Dl~~la~~~lg~~~~~---~~gL~~Lv~~- 161 (206)
T 1vk0_A 88 RLPK-PFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIR-NAINVGKLAAEARGTLVLE---FLGTRELAHR- 161 (206)
T ss_dssp ECCS-SCCGGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCS-SEEEHHHHHHHHHTCGGGG---GCCHHHHHHH-
T ss_pred eccc-cCCccHHHHHHHhcCCCceEEEeccHHHHHHHHHhcCCCcC-CeeeHHHHHHHHcCCCCCC---CccHHHHHHH-
Confidence 6521 1123455588999999999999999999999976 798775 489986 777766631 12 5999999987
Q ss_pred cccccccccccccccCCCCccccccccchhhhhcccccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 001207 492 KVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYK 571 (1123)
Q Consensus 492 ~~~~~~~Lg~~~~l~k~~~~eel~GK~s~k~lfgK~k~kkq~s~~kdw~~~pl~~l~~~~~e~~l~YAA~DA~~tlrL~e 571 (1123)
+||.. + | .|.. +. .+|.. || ++.|+.|||.||.++++||+
T Consensus 162 ------~lg~~-----------l--K-------~k~~---~~---SdW~~-pL-------s~~Qi~YAA~Da~~l~~l~~ 201 (206)
T 1vk0_A 162 ------VLWSD-----------L--G-------QLDS---IE---AKWEK-AG-------PEEQLEAAAIEGWLIVNVWD 201 (206)
T ss_dssp ------HHCCC-----------C--H-------HHHH---HH---HTGGG-SC-------HHHHHHHHHHHHHHHHHHHH
T ss_pred ------HhCCc-----------C--C-------CCCc---cc---CCCCC-cC-------CHHHHHHHHHHHHHHHHHHH
Confidence 55543 1 1 0100 11 28999 98 57899999999999999999
Q ss_pred HHHH
Q 001207 572 SLKK 575 (1123)
Q Consensus 572 ~L~~ 575 (1123)
.|.+
T Consensus 202 ~L~~ 205 (206)
T 1vk0_A 202 QLSD 205 (206)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9864
No 13
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.91 E-value=3.8e-09 Score=113.13 Aligned_cols=165 Identities=14% Similarity=0.074 Sum_probs=102.2
Q ss_pred EecCHHHHHHHHHHHHccccCceEEEeecccccccccCccccCcceEEEEeee--CCCcccCCCceEEEEeCC-------
Q 001207 347 VVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS--GPEADFGNGKSCIWVDLL------- 417 (1123)
Q Consensus 347 lV~t~e~L~~lv~~L~~a~~~~~VAfDTETtGLd~~~d~Ivg~g~ii~~sl~~--~~~I~I~~~~~~~~ID~~------- 417 (1123)
-|++.+++..+...+... .+++||+||||+++..++||++| ++.+.. +..+.+. ..-..+|.+.
T Consensus 20 ~~~~~~~~~~l~~~l~~~---~~vviD~ETTGl~~~~~~IieIg---av~~~~~~~g~i~~~-~~f~~~v~P~~~~~i~~ 92 (235)
T 3v9w_A 20 HMSDNAQLTGLCDRFRGF---YPVVIDVETAGFNAKTDALLEIA---AITLKMDEQGWLMPD-TTLHFHVEPFVGANLQP 92 (235)
T ss_dssp ---------CHHHHTTTE---EEEEEEEEESSSCTTTBCEEEEE---EEEEEECTTSCEEEE-EEEEEEBCCCTTCBCCH
T ss_pred cccccccccCchhcccCC---cEEEEEEeCCCCCCCCCeEEEEE---EEEEEEcCCCccccc-ceEEEEECCCCCCCCCH
Confidence 456777788888888775 69999999999999888887622 222210 1001000 0001122220
Q ss_pred ----------------CCChhhhHhhhhhhhcC-------CCceEEEeccHHHHHHHHH----cCCCCC----CccchHH
Q 001207 418 ----------------DGGGRDLLNEFAPFFED-------PSIKKVWHNYSFDNHVLEN----YGLKVS----GFHADTM 466 (1123)
Q Consensus 418 ----------------~~~~~evl~~Lk~~Led-------~~i~KV~HNaKfDl~vL~r----~GI~l~----~~vfDTm 466 (1123)
..+..+++..|.+++.+ ....+|+||++||+.+|.+ +|+... ..++||+
T Consensus 93 ~~~~i~GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~ 172 (235)
T 3v9w_A 93 EALAFNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTA 172 (235)
T ss_dssp HHHHHHCCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHH
T ss_pred HHHHHhCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhH
Confidence 01123467778887752 3457899999999999864 588542 3589999
Q ss_pred HHHHhcCCCCCCCCCCCHHHHhhcccccccccccccccccCCCCccccccccchhhhhcccccccCCCCCccccccchhH
Q 001207 467 HMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546 (1123)
Q Consensus 467 IAAyLLdp~~~~~gs~sLd~La~~~~~~~~~~Lg~~~~l~k~~~~eel~GK~s~k~lfgK~k~kkq~s~~kdw~~~pl~~ 546 (1123)
.+++++.|. ++|+.|+++| ++. .+ +
T Consensus 173 ~la~~~~p~------~~L~~l~~~~--------gi~--------~~---~------------------------------ 197 (235)
T 3v9w_A 173 ALAGLALGQ------TVLSKACQTA--------GMD--------FD---S------------------------------ 197 (235)
T ss_dssp HHHHHHHSC------CSHHHHHHHH--------TCC--------CC---T------------------------------
T ss_pred HHHHHHhCC------CCHHHHHHHc--------CCC--------CC---C------------------------------
Confidence 999988763 7999999752 221 00 0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001207 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEM 580 (1123)
Q Consensus 547 l~~~~~e~~l~YAA~DA~~tlrL~e~L~~kL~e~ 580 (1123)
....+|..||.++.+|+..|.++|++.
T Consensus 198 -------~~~H~Al~DA~~ta~l~~~l~~~l~~~ 224 (235)
T 3v9w_A 198 -------TQAHSALYDTERTAVLFCEIVNRWKRL 224 (235)
T ss_dssp -------TTTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------CCCcChHHHHHHHHHHHHHHHHHHHhc
Confidence 002468899999999999999999864
No 14
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=98.33 E-value=8.4e-07 Score=91.78 Aligned_cols=110 Identities=23% Similarity=0.239 Sum_probs=72.6
Q ss_pred ceEEEeecccccccccCccccCcceEEEEeeeCCCcccCCCceEEEEeCC--------------------CCChhhhHhh
Q 001207 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL--------------------DGGGRDLLNE 427 (1123)
Q Consensus 368 ~~VAfDTETtGLd~~~d~Ivg~g~ii~~sl~~~~~I~I~~~~~~~~ID~~--------------------~~~~~evl~~ 427 (1123)
.+++||+||||+++..++|+.+| ++.+..+. + +. .-..+|.+. ..+..++++.
T Consensus 13 ~~v~iD~ETTGl~~~~~~IieIg---~v~~~~g~-i-~~--~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~ 85 (186)
T 2p1j_A 13 TFVVLDFETTGLDPQVDEIIEIG---AVKIQGGQ-I-VD--EYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPE 85 (186)
T ss_dssp CEEEEEEEESCSCTTTCCEEEEE---EEEEETTE-E-EE--EEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHH
T ss_pred CEEEEEEECCCCCCCCCeEEEEE---EEEEECCE-E-EE--EEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHH
Confidence 58999999999999888887622 22222111 0 00 011223221 0124567788
Q ss_pred hhhhhcCCCceEEEeccHHHHHHHHH----cCCCC-CCccchHHHHHHhcCCCCCCCCCCCHHHHhhc
Q 001207 428 FAPFFEDPSIKKVWHNYSFDNHVLEN----YGLKV-SGFHADTMHMARLWDSSRRTEGGYSLEALTGD 490 (1123)
Q Consensus 428 Lk~~Led~~i~KV~HNaKfDl~vL~r----~GI~l-~~~vfDTmIAAyLLdp~~~~~gs~sLd~La~~ 490 (1123)
|..|+++. .+|+||+.||+.+|.+ +|+.+ ...++||+.+++.+. ... +++|++|++.
T Consensus 86 ~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~-~~~---~~~L~~l~~~ 147 (186)
T 2p1j_A 86 FLGFLEDS--IIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLL-KLR---SYSLDSVVEK 147 (186)
T ss_dssp HHHHSSSC--EEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHT-CCS---CCSHHHHHHH
T ss_pred HHHHHCCC--EEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHh-hcC---CCCHHHHHHH
Confidence 88888753 6899999999999863 57764 456899999888765 322 6999999974
No 15
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=98.32 E-value=5.5e-07 Score=97.42 Aligned_cols=120 Identities=14% Similarity=0.122 Sum_probs=73.0
Q ss_pred ceEEEeecccccccccCccccCcceEEEEeeeCC--------Cccc-----CCC--ceEEEEeCCC--------------
Q 001207 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGP--------EADF-----GNG--KSCIWVDLLD-------------- 418 (1123)
Q Consensus 368 ~~VAfDTETtGLd~~~d~Ivg~g~ii~~sl~~~~--------~I~I-----~~~--~~~~~ID~~~-------------- 418 (1123)
.+|+||+||||+++..++||++| ++.+..+. +.++ +.- .-..+|.+..
T Consensus 13 ~~vv~D~ETTGl~~~~d~IiEIg---av~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~~~~~i~GIt~ 89 (242)
T 3mxm_B 13 TLIFLDLEATGLPSSRPEVTELC---LLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSK 89 (242)
T ss_dssp EEEEEEEEESSCGGGCCCEEEEE---EEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCHHHHHHHCCCH
T ss_pred eEEEEEeecCCCCCCCCeeEEEE---EEEecCCcccccccccccccccccccchhheeEEEECCCCCCCHHHHHhcCCCH
Confidence 58999999999999989998732 33332220 0000 000 1122333210
Q ss_pred -----C---Chh-hhHhhhhhhhcCC--CceEEEecc-HHHHHHHHH----cCCCCC--C-ccchHHHHHHhcC----CC
Q 001207 419 -----G---GGR-DLLNEFAPFFEDP--SIKKVWHNY-SFDNHVLEN----YGLKVS--G-FHADTMHMARLWD----SS 475 (1123)
Q Consensus 419 -----~---~~~-evl~~Lk~~Led~--~i~KV~HNa-KfDl~vL~r----~GI~l~--~-~vfDTmIAAyLLd----p~ 475 (1123)
. ... ++++.|..|+++. ....|+||+ .||+.+|.+ +|+... + .++||+.+++.+. |.
T Consensus 90 ~~l~~~g~p~~~~ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~ 169 (242)
T 3mxm_B 90 AELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS 169 (242)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC-
T ss_pred HHHHhcCCCchhHHHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCcc
Confidence 1 122 6778888888762 246899996 999999863 687642 3 5789999888433 21
Q ss_pred C-CCCCCCCHHHHhhc
Q 001207 476 R-RTEGGYSLEALTGD 490 (1123)
Q Consensus 476 ~-~~~gs~sLd~La~~ 490 (1123)
. ...++|+|++|+++
T Consensus 170 ~~~~~~~~~L~~l~~~ 185 (242)
T 3mxm_B 170 GNGSRKSYSLGSIYTR 185 (242)
T ss_dssp -----CCCSHHHHHHH
T ss_pred ccCCCCCcCHHHHHHH
Confidence 0 01136999999975
No 16
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=98.23 E-value=9.3e-06 Score=84.12 Aligned_cols=111 Identities=17% Similarity=0.225 Sum_probs=72.9
Q ss_pred ceEEEeeccccccc-----ccCccccCcceEEEEeeeCCCcccCCCceEEEEeCCC--------------------CChh
Q 001207 368 LVHACDTEVAKIDV-----KQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD--------------------GGGR 422 (1123)
Q Consensus 368 ~~VAfDTETtGLd~-----~~d~Ivg~g~ii~~sl~~~~~I~I~~~~~~~~ID~~~--------------------~~~~ 422 (1123)
.+++||+||||+++ ..++|+..| ++.+..+ .+ +. ..-..+|.+.. .+..
T Consensus 10 ~~vviD~ETTGl~~~~~~~~~~~Iieig---~v~~~~~-~~-~~-~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~ 83 (194)
T 2gui_A 10 RQIVLDTETTGMNQIGAHYEGHKIIEIG---AVEVVNR-RL-TG-NNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFA 83 (194)
T ss_dssp EEEEEEEEESCCCSSSSTTTTCCEEEEE---EEEEETT-EE-CS-CCEEEECCCSSCCCHHHHHHHCCCHHHHTTSCCHH
T ss_pred CEEEEEeeCCCCCCcccCCCCCEEEEEE---EEEEECC-eE-ec-cEEEEEECcCCcCCHHHHHhhCcCHHHHhCCCCHH
Confidence 58999999999998 447776522 2222211 11 11 01123333211 1235
Q ss_pred hhHhhhhhhhcCCCceEEEeccHHHHHHHHH----cCCCCC-----CccchHHHHHHhcCCCCCCCCCCCHHHHhhc
Q 001207 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN----YGLKVS-----GFHADTMHMARLWDSSRRTEGGYSLEALTGD 490 (1123)
Q Consensus 423 evl~~Lk~~Led~~i~KV~HNaKfDl~vL~r----~GI~l~-----~~vfDTmIAAyLLdp~~~~~gs~sLd~La~~ 490 (1123)
++++.|..|+.+. .+|+||+.||+.+|.+ +|+..+ ..++||+..++.+.|.. +++|++|++.
T Consensus 84 ~v~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~----~~~L~~l~~~ 154 (194)
T 2gui_A 84 EVADEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGK----RNSLDALCAR 154 (194)
T ss_dssp HHHHHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTS----CCSHHHHHHH
T ss_pred HHHHHHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCC----CCCHHHHHHH
Confidence 6777888898764 5799999999999864 687733 36899998888777764 4899999975
No 17
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=98.20 E-value=1.3e-06 Score=93.32 Aligned_cols=65 Identities=28% Similarity=0.378 Sum_probs=46.7
Q ss_pred hhHhhhhhhhcCC--CceEEEecc-HHHHHHHHH----cCCCCC--CccchHHHHHHhcC---------CCCCCCCCCCH
Q 001207 423 DLLNEFAPFFEDP--SIKKVWHNY-SFDNHVLEN----YGLKVS--GFHADTMHMARLWD---------SSRRTEGGYSL 484 (1123)
Q Consensus 423 evl~~Lk~~Led~--~i~KV~HNa-KfDl~vL~r----~GI~l~--~~vfDTmIAAyLLd---------p~~~~~gs~sL 484 (1123)
++.+.|..|++.- ....|+||+ .||+.+|.+ +|+.++ ..++||+.+++.+. |... +++|
T Consensus 98 ~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~---~~~L 174 (238)
T 1y97_A 98 AVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQ---GYSL 174 (238)
T ss_dssp HHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC-------------CCSH
T ss_pred HHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCCCC---CCCH
Confidence 4567788888752 146899999 999999863 687764 35899998887664 4333 6999
Q ss_pred HHHhhc
Q 001207 485 EALTGD 490 (1123)
Q Consensus 485 d~La~~ 490 (1123)
++|+++
T Consensus 175 ~~l~~~ 180 (238)
T 1y97_A 175 GSLFHR 180 (238)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 18
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=98.12 E-value=9e-06 Score=86.36 Aligned_cols=112 Identities=18% Similarity=0.075 Sum_probs=68.7
Q ss_pred ceEEEeecccccccccCccccCcceEEEEee---eCCCcccCCCceEEEEeCC-------------C----------CCh
Q 001207 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIY---SGPEADFGNGKSCIWVDLL-------------D----------GGG 421 (1123)
Q Consensus 368 ~~VAfDTETtGLd~~~d~Ivg~g~ii~~sl~---~~~~I~I~~~~~~~~ID~~-------------~----------~~~ 421 (1123)
.+++||+||||+++..++||.+| ++.+. .+. +.+.. .-..+|.+. + .+.
T Consensus 30 ~~vviD~ETTGl~~~~~~IieIg---~v~~~~~~~g~-i~~~~-~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~ 104 (224)
T 2f96_A 30 LPVVVDVETGGFNSATDALLEIA---ATTVGMDEKGF-LFPEH-TYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQE 104 (224)
T ss_dssp EEEEEEEEESSSCTTTBCEEEEE---EEEEEECTTSC-EEEEE-EEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCH
T ss_pred cEEEEEeeCCCCCCCCCeeEEEE---EEEEEEcCCCc-ccccc-eEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCH
Confidence 58999999999999888887622 22222 111 10000 011223221 0 112
Q ss_pred hhhHhhhhhhhcC-------CCceEEEeccHHHHHHHHH----cCCCC----CCccchHHHHHHhcCCCCCCCCCCCHHH
Q 001207 422 RDLLNEFAPFFED-------PSIKKVWHNYSFDNHVLEN----YGLKV----SGFHADTMHMARLWDSSRRTEGGYSLEA 486 (1123)
Q Consensus 422 ~evl~~Lk~~Led-------~~i~KV~HNaKfDl~vL~r----~GI~l----~~~vfDTmIAAyLLdp~~~~~gs~sLd~ 486 (1123)
.+++..|.+++.+ ....+|+||+.||+.+|.+ +|+.. ...++||+.+++.+.| .++|+.
T Consensus 105 ~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~------~~~L~~ 178 (224)
T 2f96_A 105 EAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG------QTVLAK 178 (224)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS------CCSHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC------CCCHHH
Confidence 3455666666641 2346899999999999863 57752 2358999998886654 378999
Q ss_pred Hhhc
Q 001207 487 LTGD 490 (1123)
Q Consensus 487 La~~ 490 (1123)
|++.
T Consensus 179 l~~~ 182 (224)
T 2f96_A 179 ACQA 182 (224)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 19
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=98.08 E-value=4.1e-06 Score=94.02 Aligned_cols=120 Identities=14% Similarity=0.130 Sum_probs=72.1
Q ss_pred ceEEEeecccccccccCccccCcceEEEEeeeCC----------Cccc---CC--CceEEEEeCCC--------------
Q 001207 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGP----------EADF---GN--GKSCIWVDLLD-------------- 418 (1123)
Q Consensus 368 ~~VAfDTETtGLd~~~d~Ivg~g~ii~~sl~~~~----------~I~I---~~--~~~~~~ID~~~-------------- 418 (1123)
.+|+||+||||+++..++||++| ++.+..+. ...+ +. ..-..+|.+..
T Consensus 13 tfVv~DlETTGL~~~~d~IIEIg---aV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhGIT~ 89 (314)
T 3u3y_B 13 TLIFLDLEATGLPSSRPEVTELC---LLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSK 89 (314)
T ss_dssp EEEEEEEEESSCGGGCCCEEEEE---EEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHSCCH
T ss_pred CEEEEEEECCCCCCCCCeEEEEE---EEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcCCCH
Confidence 58999999999999999998732 33332210 0000 00 01122333310
Q ss_pred -----C---Ch-hhhHhhhhhhhcCC--CceEEEec-cHHHHHHHHH----cCCCCC---CccchHHHHHH-h---cCCC
Q 001207 419 -----G---GG-RDLLNEFAPFFEDP--SIKKVWHN-YSFDNHVLEN----YGLKVS---GFHADTMHMAR-L---WDSS 475 (1123)
Q Consensus 419 -----~---~~-~evl~~Lk~~Led~--~i~KV~HN-aKfDl~vL~r----~GI~l~---~~vfDTmIAAy-L---Ldp~ 475 (1123)
. .. .++++.|.+|+++. ...+|+|| +.||+.+|.+ +|+... ..++||+.+.+ | +.|.
T Consensus 90 e~l~~aG~P~f~~ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~ 169 (314)
T 3u3y_B 90 AELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS 169 (314)
T ss_dssp HHHHHTTCCBSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC---
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCcc
Confidence 0 12 36777888888762 24689999 9999999863 687653 34789998665 3 2332
Q ss_pred C-CCCCCCCHHHHhhc
Q 001207 476 R-RTEGGYSLEALTGD 490 (1123)
Q Consensus 476 ~-~~~gs~sLd~La~~ 490 (1123)
. ...++|+|++|+++
T Consensus 170 ~~~~~~~~~L~~L~~~ 185 (314)
T 3u3y_B 170 GNGSRKSYSLGSIYTR 185 (314)
T ss_dssp ----CCCCSHHHHHHH
T ss_pred ccccCCCCCHHHHHHH
Confidence 1 00136999999976
No 20
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=97.80 E-value=5.9e-06 Score=86.10 Aligned_cols=68 Identities=10% Similarity=0.001 Sum_probs=47.7
Q ss_pred hhhhHhhhhhhhcCCC-----ceEEEeccHHHHH-HHHH----cCCCCCC---ccchHHHHHHhcCCCCCCCCCCCHHHH
Q 001207 421 GRDLLNEFAPFFEDPS-----IKKVWHNYSFDNH-VLEN----YGLKVSG---FHADTMHMARLWDSSRRTEGGYSLEAL 487 (1123)
Q Consensus 421 ~~evl~~Lk~~Led~~-----i~KV~HNaKfDl~-vL~r----~GI~l~~---~vfDTmIAAyLLdp~~~~~gs~sLd~L 487 (1123)
..++++.|..|+.+.. ...|+||+.||+. +|.+ +|+..+. .++||+..++.+.+.. .++++|++|
T Consensus 85 ~~~v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~--~~~~~L~~l 162 (204)
T 1w0h_A 85 FPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVP--RSQTKLTIM 162 (204)
T ss_dssp HHHHHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCC--GGGCSHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCC--CccchHHHH
Confidence 3567778888887542 3479999999996 8853 5777553 5899998776443321 124899999
Q ss_pred hhc
Q 001207 488 TGD 490 (1123)
Q Consensus 488 a~~ 490 (1123)
++.
T Consensus 163 ~~~ 165 (204)
T 1w0h_A 163 LEK 165 (204)
T ss_dssp HHH
T ss_pred HHH
Confidence 974
No 21
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=97.80 E-value=7.2e-05 Score=77.50 Aligned_cols=63 Identities=19% Similarity=-0.026 Sum_probs=42.4
Q ss_pred hhhhHhhhhhhhcCCCceEEEeccHHHHHHHHHcCCCCCCccchHHHHHHh----cCCCCCCCCCCCHHHHhhc
Q 001207 421 GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL----WDSSRRTEGGYSLEALTGD 490 (1123)
Q Consensus 421 ~~evl~~Lk~~Led~~i~KV~HNaKfDl~vL~r~GI~l~~~vfDTmIAAyL----Ldp~~~~~gs~sLd~La~~ 490 (1123)
..++++.|..|+.+ ..+|+||+.||+.+|.+.- ....++||+....+ ..|... +++|+.|+++
T Consensus 70 ~~~v~~~~~~~l~~--~~lV~hn~~fD~~~L~~~~--~~~~~idt~~~~~~~~~~~~p~~~---~~~L~~l~~~ 136 (189)
T 1wlj_A 70 FAVARLEILQLLKG--KLVVGHDLKHDFQALKEDM--SGYTIYDTSTDRLLWREAKLDHCR---RVSLRVLSER 136 (189)
T ss_dssp HHHHHHHHHHHHTT--SEEEESSHHHHHHHTTCCC--TTCEEEEGGGCHHHHHHHTC--------CCHHHHHHH
T ss_pred HHHHHHHHHHHHCC--CEEEECCcHHHHHHHHHhC--CCCceechHhhhhhhhcccCCCCC---CccHHHHHHH
Confidence 45677888899975 3689999999999997531 12357899865321 223322 6999999975
No 22
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=97.74 E-value=2.7e-05 Score=81.20 Aligned_cols=103 Identities=13% Similarity=0.113 Sum_probs=65.8
Q ss_pred ceEEEeecccccccccCccccCcceEEEEeeeCCCcccCCCceEEEEe-CC-----------------C---------CC
Q 001207 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVD-LL-----------------D---------GG 420 (1123)
Q Consensus 368 ~~VAfDTETtGLd~~~d~Ivg~g~ii~~sl~~~~~I~I~~~~~~~~ID-~~-----------------~---------~~ 420 (1123)
.+|+||+||||+++..++|+++| ++ +.++....+... ..++|. +. + .+
T Consensus 10 ~~v~~D~ETTGL~p~~d~IiEIg---aV-~~d~~~~i~~~~-~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~ 84 (186)
T 3tr8_A 10 NLIWLDLEMTGLDPERDRIIEIA---TI-VTNSHLDILAEG-PAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVD 84 (186)
T ss_dssp CEEEEEEEESSSCTTTCCEEEEE---EE-EECTTCCEEEEC-CCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCC
T ss_pred cEEEEEEECCCCCCCCCceEEEE---EE-EEcCCeEEeeee-EEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCC
Confidence 68999999999999999998732 33 333321111110 012231 10 1 12
Q ss_pred hhhhHhhhhhhhcC----CCceEEEeccHHHHHHHHH----cCCCCCCccch--HHH-HHHhcCCC
Q 001207 421 GRDLLNEFAPFFED----PSIKKVWHNYSFDNHVLEN----YGLKVSGFHAD--TMH-MARLWDSS 475 (1123)
Q Consensus 421 ~~evl~~Lk~~Led----~~i~KV~HNaKfDl~vL~r----~GI~l~~~vfD--TmI-AAyLLdp~ 475 (1123)
..++++.|.+|+.. ....+|+||+.||+.+|.+ .|..+...++| |+- +++.+.|.
T Consensus 85 ~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~P~ 150 (186)
T 3tr8_A 85 EVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWAPQ 150 (186)
T ss_dssp HHHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHCcc
Confidence 45677888888831 2246899999999999965 35445667889 886 88877764
No 23
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=97.56 E-value=0.00018 Score=85.24 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=72.0
Q ss_pred ceEEEeecccccccccCccccCcceEEEEeeeCCCcccCCCceEEEEeCCC-------------C----------Chhhh
Q 001207 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD-------------G----------GGRDL 424 (1123)
Q Consensus 368 ~~VAfDTETtGLd~~~d~Ivg~g~ii~~sl~~~~~I~I~~~~~~~~ID~~~-------------~----------~~~ev 424 (1123)
.+++||+||||+++..++||.+| ++.+ ...+..+.. .-..+|.+.. + ...++
T Consensus 10 ~~vv~DlETTGl~p~~d~IIEIg---aV~v-d~~g~ii~~-~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~ev 84 (482)
T 2qxf_A 10 TFLFHDYETFGTHPALDRPAQFA---AIRT-DSEFNVIGE-PEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAF 84 (482)
T ss_dssp EEEEEEEEESSSCTTTSCEEEEE---EEEE-CTTSCBCSC-CEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHH
T ss_pred CEEEEEEECCCCCCCCCeEEEEE---EEEE-ECCCeEEee-eeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHH
Confidence 58999999999999888887622 2222 212211211 0123332211 1 12456
Q ss_pred HhhhhhhhcCCCceEEEec-cHHHHHHHH----HcCCCC-C------CccchHHHHHHhcCCC----------CCCCCCC
Q 001207 425 LNEFAPFFEDPSIKKVWHN-YSFDNHVLE----NYGLKV-S------GFHADTMHMARLWDSS----------RRTEGGY 482 (1123)
Q Consensus 425 l~~Lk~~Led~~i~KV~HN-aKfDl~vL~----r~GI~l-~------~~vfDTmIAAyLLdp~----------~~~~gs~ 482 (1123)
+..|..++..+....|+|| +.||+.+|. ++|+.. . +..+||+-.++.+.+. ....+++
T Consensus 85 l~~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~ 164 (482)
T 2qxf_A 85 AARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSF 164 (482)
T ss_dssp HHHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCC
T ss_pred HHHHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCC
Confidence 6778888874455789999 899999985 356652 2 4567998877764320 0012368
Q ss_pred CHHHHhhc
Q 001207 483 SLEALTGD 490 (1123)
Q Consensus 483 sLd~La~~ 490 (1123)
+|+.|+..
T Consensus 165 kL~~L~~~ 172 (482)
T 2qxf_A 165 RLEHLTKA 172 (482)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99999864
No 24
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=97.43 E-value=0.00021 Score=73.05 Aligned_cols=102 Identities=15% Similarity=0.091 Sum_probs=59.9
Q ss_pred ceEEEeecccccccccCccccCcceEEEEeeeCCCcccCCCceEEEEeCC------------------C---------CC
Q 001207 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL------------------D---------GG 420 (1123)
Q Consensus 368 ~~VAfDTETtGLd~~~d~Ivg~g~ii~~sl~~~~~I~I~~~~~~~~ID~~------------------~---------~~ 420 (1123)
.+++||+||||+++..++|+++ +.....+.+..+.. .-..+|.+. + .+
T Consensus 6 ~~v~iD~ETTGl~~~~~~IieI----g~v~~~~~~~~~~~-~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~~ 80 (180)
T 2igi_A 6 NLIWIDLEMTGLDPERDRIIEI----ATLVTDANLNILAE-GPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMG 80 (180)
T ss_dssp CEEEEEEEESSSCTTTCCEEEE----EEEEECTTCCEEEE-EEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCC
T ss_pred cEEEEEeeCCCCCCCCCceEEE----EEEEEcCCCcEecC-CcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCCC
Confidence 5899999999999988888762 22222211111100 011222211 1 12
Q ss_pred hhhhHhhhhhhhcCC----CceEEEeccHHHHHHHHH----cCCCCCCccch--HHH-HHHhcCC
Q 001207 421 GRDLLNEFAPFFEDP----SIKKVWHNYSFDNHVLEN----YGLKVSGFHAD--TMH-MARLWDS 474 (1123)
Q Consensus 421 ~~evl~~Lk~~Led~----~i~KV~HNaKfDl~vL~r----~GI~l~~~vfD--TmI-AAyLLdp 474 (1123)
..++++.|.+|+++. ...+|+||+.||+.+|.+ +|..+...++| |+. +++.+.|
T Consensus 81 ~~~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl~~l~~~~~p 145 (180)
T 2igi_A 81 DREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKP 145 (180)
T ss_dssp HHHHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHHHHHHHHhCh
Confidence 456777888888751 246899999999999975 23334445678 763 4554443
No 25
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=97.35 E-value=0.00025 Score=78.81 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=46.6
Q ss_pred hhhhHhhhhhhhcCCC-----ceEEEeccHHHHH-HHHH----cCCCCCC---ccchHHHHHH-hcCCCCCCCCCCCHHH
Q 001207 421 GRDLLNEFAPFFEDPS-----IKKVWHNYSFDNH-VLEN----YGLKVSG---FHADTMHMAR-LWDSSRRTEGGYSLEA 486 (1123)
Q Consensus 421 ~~evl~~Lk~~Led~~-----i~KV~HNaKfDl~-vL~r----~GI~l~~---~vfDTmIAAy-LLdp~~~~~gs~sLd~ 486 (1123)
..+++..|..|+.+.. ...|+||+.||+. +|.+ +|+..+. .++||+.... +.+... +.++|++
T Consensus 153 ~~evl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~---~~~~L~~ 229 (299)
T 1zbh_A 153 FPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR---SQTKLTI 229 (299)
T ss_dssp HHHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG---GGCSHHH
T ss_pred HHHHHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCC---CCccHHH
Confidence 4567788888887641 3689999999999 9854 6777542 4889986554 332111 2489999
Q ss_pred Hhhc
Q 001207 487 LTGD 490 (1123)
Q Consensus 487 La~~ 490 (1123)
|++.
T Consensus 230 l~~~ 233 (299)
T 1zbh_A 230 MLEK 233 (299)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9975
No 26
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=97.08 E-value=0.00042 Score=73.67 Aligned_cols=110 Identities=12% Similarity=0.076 Sum_probs=65.2
Q ss_pred ceEEEeecccccccccC--ccccCcceEEEEeeeCCCcccCCCceEEEEeCCC----------------------CChhh
Q 001207 368 LVHACDTEVAKIDVKQE--TPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD----------------------GGGRD 423 (1123)
Q Consensus 368 ~~VAfDTETtGLd~~~d--~Ivg~g~ii~~sl~~~~~I~I~~~~~~~~ID~~~----------------------~~~~e 423 (1123)
.+++||+||||+++..+ +||++| ++.+..+.+ .+.. .-..+|.+.. .+..+
T Consensus 32 ~~vviD~ETTGl~~~~d~~~IieIg---av~v~~~~~-~i~~-~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~ 106 (224)
T 2xri_A 32 YFLVLDFEATCDKPQIHPQEIIEFP---ILKLNGRTM-EIES-TFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQ 106 (224)
T ss_dssp EEEEECCEECCCC-CCSSCCEEEEE---EEEEETTTC-CEEE-EEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHH
T ss_pred eEEEEEEEcCCCCCCCCCcceEEEE---EEEEecCCc-EEee-eeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHH
Confidence 48999999999998764 676522 222221100 0000 0112332210 12456
Q ss_pred hHhhhhhhhcCCCceEEEecc--------HHHHHH-HH----HcCCCCC---Cccch---HHHHHHhcCCCCCCCCCCCH
Q 001207 424 LLNEFAPFFEDPSIKKVWHNY--------SFDNHV-LE----NYGLKVS---GFHAD---TMHMARLWDSSRRTEGGYSL 484 (1123)
Q Consensus 424 vl~~Lk~~Led~~i~KV~HNa--------KfDl~v-L~----r~GI~l~---~~vfD---TmIAAyLLdp~~~~~gs~sL 484 (1123)
+++.|..|+++. ..|+||+ .||+.+ |. ++|+..+ ..++| |+-.++-+.| .++|
T Consensus 107 v~~~f~~~l~~~--~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p------~~~L 178 (224)
T 2xri_A 107 VLERVDEWMAKE--GLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWP------KNGL 178 (224)
T ss_dssp HHHHHHHHHHHT--TTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCC------TTTH
T ss_pred HHHHHHHHHhhc--ccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCC------CCCH
Confidence 778888898865 3689999 999996 63 3587764 25789 5555553333 3899
Q ss_pred HHHhhc
Q 001207 485 EALTGD 490 (1123)
Q Consensus 485 d~La~~ 490 (1123)
..|++.
T Consensus 179 ~~l~~~ 184 (224)
T 2xri_A 179 LDMNKG 184 (224)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 27
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=97.01 E-value=0.00019 Score=81.77 Aligned_cols=68 Identities=10% Similarity=-0.007 Sum_probs=46.4
Q ss_pred hhhhHhhhhhhhcCCC-----ceEEEeccHHHHH-HHHH----cCCCCCC---ccchHHHHHHhcCCCCCCCCCCCHHHH
Q 001207 421 GRDLLNEFAPFFEDPS-----IKKVWHNYSFDNH-VLEN----YGLKVSG---FHADTMHMARLWDSSRRTEGGYSLEAL 487 (1123)
Q Consensus 421 ~~evl~~Lk~~Led~~-----i~KV~HNaKfDl~-vL~r----~GI~l~~---~vfDTmIAAyLLdp~~~~~gs~sLd~L 487 (1123)
..+++..|..|+.+.. ...|+||+.||+. +|.+ +|+..+. .++||+....-+... . .+.++|+.|
T Consensus 203 ~~eVl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~-~-~~~~~L~~l 280 (349)
T 1zbu_A 203 FPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKV-P-RSQTKLTIM 280 (349)
T ss_dssp HHHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTC-C-GGGGSHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcC-C-CCCCCHHHH
Confidence 3567778888887641 3689999999999 9854 6776542 478998765432111 1 114899999
Q ss_pred hhc
Q 001207 488 TGD 490 (1123)
Q Consensus 488 a~~ 490 (1123)
+..
T Consensus 281 ~~~ 283 (349)
T 1zbu_A 281 LEK 283 (349)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 28
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=96.92 E-value=0.00012 Score=81.96 Aligned_cols=68 Identities=3% Similarity=-0.069 Sum_probs=45.5
Q ss_pred hhhhHhhhhhhhcCCCceEEEecc------HHHH-HHHH----HcCCCCC---CccchHHHHHHhcCCCCC---CCCCCC
Q 001207 421 GRDLLNEFAPFFEDPSIKKVWHNY------SFDN-HVLE----NYGLKVS---GFHADTMHMARLWDSSRR---TEGGYS 483 (1123)
Q Consensus 421 ~~evl~~Lk~~Led~~i~KV~HNa------KfDl-~vL~----r~GI~l~---~~vfDTmIAAyLLdp~~~---~~gs~s 483 (1123)
..++++.|..|+++.. .|+||+ .||+ .+|. ++|+.++ ..++||+-.++.+.+... ..++++
T Consensus 95 ~~evl~~f~~~l~~~~--lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~ 172 (308)
T 3cg7_A 95 FDVVYEQFQQWLITLG--LEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTN 172 (308)
T ss_dssp HHHHHHHHHHHHHHHC--CCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSH
T ss_pred HHHHHHHHHHHHHhCC--cCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcC
Confidence 4567788888887643 478888 9999 5774 4688765 247899976664433211 012478
Q ss_pred HHHHhhc
Q 001207 484 LEALTGD 490 (1123)
Q Consensus 484 Ld~La~~ 490 (1123)
|+++++.
T Consensus 173 L~~l~~~ 179 (308)
T 3cg7_A 173 IGKMNEY 179 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
No 29
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=96.92 E-value=0.001 Score=69.18 Aligned_cols=81 Identities=7% Similarity=0.010 Sum_probs=49.8
Q ss_pred ceEEEeecccccccccCccccCcceEEEEeeeCCCcccCCCceEEEEeCC------------------C---------CC
Q 001207 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL------------------D---------GG 420 (1123)
Q Consensus 368 ~~VAfDTETtGLd~~~d~Ivg~g~ii~~sl~~~~~I~I~~~~~~~~ID~~------------------~---------~~ 420 (1123)
.+++||+||||+++..++|+++| ++. ..+....+.. .-..+|.+. + .+
T Consensus 10 ~~vviD~ETTGl~p~~d~IieIg---av~-~~~~~~~~~~-~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p~ 84 (194)
T 2gbz_A 10 RLIWIDLEMTGLDTDRDSIIEIA---TIV-TDAQLNVLAE-GPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVT 84 (194)
T ss_dssp EEEEEEEEESCSCTTTCCEEEEE---EEE-EETTCCEEEE-CCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCCC
T ss_pred CEEEEEeECCCCCCCCCccEEEE---EEE-EcCCcceecc-CceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCCC
Confidence 68999999999999888888732 222 2222101110 001223211 0 12
Q ss_pred hhhhHhhhhhhhcCCC----ceEEEeccHHHHHHHHH
Q 001207 421 GRDLLNEFAPFFEDPS----IKKVWHNYSFDNHVLEN 453 (1123)
Q Consensus 421 ~~evl~~Lk~~Led~~----i~KV~HNaKfDl~vL~r 453 (1123)
..++++.|.+|+++.. ..+|+||+.||+.+|.+
T Consensus 85 ~~ev~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~ 121 (194)
T 2gbz_A 85 HAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHR 121 (194)
T ss_dssp HHHHHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHH
Confidence 3467778888887642 24899999999999975
No 30
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=92.89 E-value=2.6 Score=46.57 Aligned_cols=52 Identities=10% Similarity=0.027 Sum_probs=35.1
Q ss_pred CCCceEEEeccHHHHHHHHH--cCCCCCC--------------ccchHHHHHHhcCCCCCCCCCCCHHHHhhc
Q 001207 434 DPSIKKVWHNYSFDNHVLEN--YGLKVSG--------------FHADTMHMARLWDSSRRTEGGYSLEALTGD 490 (1123)
Q Consensus 434 d~~i~KV~HNaKfDl~vL~r--~GI~l~~--------------~vfDTmIAAyLLdp~~~~~gs~sLd~La~~ 490 (1123)
++.+.+|.|+..+|+..|.+ .|-.++. .++||..++..+..- .-||+.||+.
T Consensus 148 ~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l-----~ggL~~lA~~ 215 (285)
T 4gmj_B 148 CEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNL-----KGGLQEVAEQ 215 (285)
T ss_dssp CTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTC-----CSCHHHHHHH
T ss_pred cCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhcccc-----CChHHHHHHh
Confidence 56788999998999988754 2434432 367888777765432 2478888764
No 31
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=92.82 E-value=1.2 Score=51.20 Aligned_cols=107 Identities=20% Similarity=0.305 Sum_probs=65.9
Q ss_pred hhhHhhhhhhh--cCCCceEEEecc-HHHHHHHH----H-cCC---------------------------CCCCc-cchH
Q 001207 422 RDLLNEFAPFF--EDPSIKKVWHNY-SFDNHVLE----N-YGL---------------------------KVSGF-HADT 465 (1123)
Q Consensus 422 ~evl~~Lk~~L--ed~~i~KV~HNa-KfDl~vL~----r-~GI---------------------------~l~~~-vfDT 465 (1123)
.+.+..|..++ .||. .++|||. .||+.+|. . +|+ .+++. .+|+
T Consensus 192 ~~LL~~f~~~i~~~dPD-ii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i~GR~~lD~ 270 (388)
T 1noy_A 192 RDMLMEYINLWEQKRPA-IFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSIDGVSILDY 270 (388)
T ss_dssp HHHHHHHHHHHHHSCCS-EEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEETTSEECCH
T ss_pred HHHHHHHHHHHHHhCCc-EEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEEcCeEEeEH
Confidence 34666777777 3565 4789996 79999873 2 342 11222 6899
Q ss_pred HHHHHhcCCC-CCCCCCCCHHHHhhcccccccccccccccccCCCCccccccccchhhhhcccccccCCCCCccccccch
Q 001207 466 MHMARLWDSS-RRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544 (1123)
Q Consensus 466 mIAAyLLdp~-~~~~gs~sLd~La~~~~~~~~~~Lg~~~~l~k~~~~eel~GK~s~k~lfgK~k~kkq~s~~kdw~~~pl 544 (1123)
+.+.+-+.-. .. +|+|++++.. +|+.. | .++ . . .+..+
T Consensus 271 ~~~~k~~~~~~l~---sysL~~Va~~-------~Lg~~----K----~d~----------~-----~--------~i~~~ 309 (388)
T 1noy_A 271 LDLYKKFAFTNLP---SFSLESVAQH-------ETKKG----K----LPY----------D-----G--------PINKL 309 (388)
T ss_dssp HHHHHHHTCCCCS---CCSHHHHHHH-------HHSCC----C----CCC----------S-----S--------CGGGH
T ss_pred HHHHhhcCcCccc---CCCHHHHHHH-------HhCCC----C----CCc----------H-----H--------HHHHH
Confidence 9888764322 33 6999999986 45432 0 000 0 0 00011
Q ss_pred hHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001207 545 EELQREERELWISYSAFDSINTLKLYKSL 573 (1123)
Q Consensus 545 ~~l~~~~~e~~l~YAA~DA~~tlrL~e~L 573 (1123)
..........|+..||..+++|+.++
T Consensus 310 ---~~~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 310 ---RETNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11235678899999999999999874
No 32
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=92.76 E-value=0.94 Score=56.66 Aligned_cols=153 Identities=18% Similarity=0.185 Sum_probs=86.4
Q ss_pred CceEEEeecccc---cccccCccccCcceEEEEeeeCCCcccCCCceEEEE-eCC-------CCChhhhHhhhhhhhc--
Q 001207 367 HLVHACDTEVAK---IDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV-DLL-------DGGGRDLLNEFAPFFE-- 433 (1123)
Q Consensus 367 ~~~VAfDTETtG---Ld~~~d~Ivg~g~ii~~sl~~~~~I~I~~~~~~~~I-D~~-------~~~~~evl~~Lk~~Le-- 433 (1123)
..+++||+||++ .++..+.| +++++....+ ..++. ... ..+..+.+..|..++.
T Consensus 135 l~ilsfDIEt~~~~~p~~~~d~I------i~Is~~~~~~-------~~~~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~ 201 (775)
T 1qht_A 135 LTMLAFAIATLYHEGEEFGTGPI------LMISYADGSE-------ARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREK 201 (775)
T ss_dssp CCEEEEEEEECCCTTCCTTCSCE------EEEEEECSSC-------EEEEESSCCCCSSEEECSCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEEEcCCCCCCCCCCcE------EEEEEEecCC-------CeeEeeccccccceEEcCCHHHHHHHHHHHHHhc
Confidence 368999999998 44444443 5566543221 01111 000 0122345666766665
Q ss_pred CCCceEEEecc-HHHHHHHH----HcCCCCC----------------------C-ccchHHHHHHhcCCCCCCCCCCCHH
Q 001207 434 DPSIKKVWHNY-SFDNHVLE----NYGLKVS----------------------G-FHADTMHMARLWDSSRRTEGGYSLE 485 (1123)
Q Consensus 434 d~~i~KV~HNa-KfDl~vL~----r~GI~l~----------------------~-~vfDTmIAAyLLdp~~~~~gs~sLd 485 (1123)
||+ .+|+||. .||+.+|. .+|+.+. + ..+|++...+-.. ... +++|+
T Consensus 202 dPD-iivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~-~l~---sysL~ 276 (775)
T 1qht_A 202 DPD-VLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTI-NLP---TYTLE 276 (775)
T ss_dssp CCS-EEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHS-CCS---CCCHH
T ss_pred CCC-EEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhc-CcC---cCCHH
Confidence 565 4799995 79999884 2566532 2 2569887666422 222 59999
Q ss_pred HHhhcccccccccccccccccCCCCccccccccchhhhhcccccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHH
Q 001207 486 ALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSIN 565 (1123)
Q Consensus 486 ~La~~~~~~~~~~Lg~~~~l~k~~~~eel~GK~s~k~lfgK~k~kkq~s~~kdw~~~pl~~l~~~~~e~~l~YAA~DA~~ 565 (1123)
+++.. +||.. .+++-+. ....+| ...+ .......|+..||..
T Consensus 277 ~Va~~-------~Lg~~--------K~dv~~~-~i~~~~---------------~~~~-------~l~~l~~Y~~~Da~l 318 (775)
T 1qht_A 277 AVYEA-------VFGKP--------KEKVYAE-EIAQAW---------------ESGE-------GLERVARYSMEDAKV 318 (775)
T ss_dssp HHHHH-------HHCCC--------CCCCCHH-HHHHHH---------------TTTC-------SHHHHHHHHHHHHHH
T ss_pred HHHHH-------HhCCC--------CCccCHH-HHHHHH---------------hcCc-------cHHHHHHHHHHHHHH
Confidence 99976 55543 0111010 011111 1111 135678999999999
Q ss_pred HHHHHHHHHH
Q 001207 566 TLKLYKSLKK 575 (1123)
Q Consensus 566 tlrL~e~L~~ 575 (1123)
+++|+..+.+
T Consensus 319 t~~L~~~~~~ 328 (775)
T 1qht_A 319 TYELGREFFP 328 (775)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhH
Confidence 9999876543
No 33
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=90.57 E-value=2.5 Score=53.67 Aligned_cols=107 Identities=21% Similarity=0.390 Sum_probs=65.5
Q ss_pred hhhHhhhhhhhc--CCCceEEEecc-HHHHHHHH----H-cCCC---------------------------CCCc-cchH
Q 001207 422 RDLLNEFAPFFE--DPSIKKVWHNY-SFDNHVLE----N-YGLK---------------------------VSGF-HADT 465 (1123)
Q Consensus 422 ~evl~~Lk~~Le--d~~i~KV~HNa-KfDl~vL~----r-~GI~---------------------------l~~~-vfDT 465 (1123)
.+.+..|..++. ||.+ ++|||. .||+..|. + +|+. +.+. .+|+
T Consensus 195 ~eLL~~F~~~I~~~DPDI-ItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~~~~~i~GRv~lDl 273 (903)
T 3qex_A 195 KELLMEYLNFWQQKTPVI-LTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIITLFGISVLDY 273 (903)
T ss_dssp HHHHHHHHHHHHHTCCSE-EECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEEEEETTCEECCH
T ss_pred HHHHHHHHHHHHHhCCCE-EEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCCceeEEEeCeEEeeH
Confidence 345666777665 6664 678995 79999873 2 3642 1222 6798
Q ss_pred HHHHHhcC-CCCCCCCCCCHHHHhhcccccccccccccccccCCCCccccccccchhhhhcccccccCCCCCccccccch
Q 001207 466 MHMARLWD-SSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544 (1123)
Q Consensus 466 mIAAyLLd-p~~~~~gs~sLd~La~~~~~~~~~~Lg~~~~l~k~~~~eel~GK~s~k~lfgK~k~kkq~s~~kdw~~~pl 544 (1123)
+-+.+-.. .... +|+|+.+|.. +|+..+ +++ . . .+
T Consensus 274 ~~~~k~~~~~~l~---SYsLd~VA~~-------lLg~~K--------~d~----------~-------------~---~I 309 (903)
T 3qex_A 274 IDLYKKFSFTNQP---SYSLDYISEF-------ELNVGK--------LKY----------D-------------G---PI 309 (903)
T ss_dssp HHHHHHHSCCCCS---CCCHHHHHHH-------HHCCCC--------CCC----------S-------------S---CG
T ss_pred HHHHHHhCccCcC---CCCHHHHHHH-------HcCCCc--------ccc----------H-------------H---HH
Confidence 87776432 2232 6999999986 454320 000 0 0 01
Q ss_pred hHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001207 545 EELQREERELWISYSAFDSINTLKLYKSL 573 (1123)
Q Consensus 545 ~~l~~~~~e~~l~YAA~DA~~tlrL~e~L 573 (1123)
.++..........|+..||..+++|+.++
T Consensus 310 ~~~~~~d~~~L~~Ycl~Da~Lt~~L~~Kl 338 (903)
T 3qex_A 310 SKLRESNHQRYISYNIIAVYRVLQIDAKR 338 (903)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122235678899999999999999863
No 34
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=87.57 E-value=11 Score=47.62 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=27.6
Q ss_pred hhhhHhhhhhhhcCCCceEEEecc-HHHHHHHH----HcCCC
Q 001207 421 GRDLLNEFAPFFEDPSIKKVWHNY-SFDNHVLE----NYGLK 457 (1123)
Q Consensus 421 ~~evl~~Lk~~Led~~i~KV~HNa-KfDl~vL~----r~GI~ 457 (1123)
..+.+..|..++.+.. .+++||. .||+.+|. ++|+.
T Consensus 257 E~~LL~~f~~~i~~~d-iivgyN~~~FDlPyL~~Ra~~lgi~ 297 (847)
T 1s5j_A 257 EYELLGRFFDILLEYP-IVLTFNGDDFDLPYIYFRALKLGYF 297 (847)
T ss_dssp HHHHHHHHHHHHTTCS-EEEESSTTTTHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhccCC-EEEEeCCCCchHHHHHHHHHHcCCC
Confidence 3467888888888875 6899995 79999984 25764
No 35
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=80.43 E-value=17 Score=45.55 Aligned_cols=65 Identities=25% Similarity=0.381 Sum_probs=40.8
Q ss_pred hhhHhhhhhhhc--CCCceEEEecc-HHHHHHHHH----cCCCC-------------------------CCc-cchHHHH
Q 001207 422 RDLLNEFAPFFE--DPSIKKVWHNY-SFDNHVLEN----YGLKV-------------------------SGF-HADTMHM 468 (1123)
Q Consensus 422 ~evl~~Lk~~Le--d~~i~KV~HNa-KfDl~vL~r----~GI~l-------------------------~~~-vfDTmIA 468 (1123)
.+.+..|..++. ||+ .+++||. .||+.+|.+ +|+.+ .+. .+|++-+
T Consensus 205 ~~lL~~f~~~i~~~dPD-ii~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~ 283 (786)
T 3k59_A 205 PQLLEKLNAWFANYDPD-VIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEA 283 (786)
T ss_dssp HHHHHHHHHHHHHHCCS-EEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHH
T ss_pred HHHHHHHHHHHHHcCCC-EEEecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHH
Confidence 456666666665 565 4799996 689999842 45432 111 5687665
Q ss_pred HHhcCCCCCCCCCCCHHHHhhc
Q 001207 469 ARLWDSSRRTEGGYSLEALTGD 490 (1123)
Q Consensus 469 AyLLdp~~~~~gs~sLd~La~~ 490 (1123)
.+-...... +|+|+++|..
T Consensus 284 lk~~~~~l~---SysL~~Va~~ 302 (786)
T 3k59_A 284 LKSAFWNFS---SFSLETVAQE 302 (786)
T ss_dssp HHHTTCCCS---CCSHHHHHHH
T ss_pred HHhccCCCC---CCCHHHHHHH
Confidence 553222233 6999999986
No 36
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=78.44 E-value=53 Score=35.62 Aligned_cols=53 Identities=9% Similarity=0.008 Sum_probs=35.9
Q ss_pred cCCCceEEEeccHHHHHHHHH--cCCCCCC--------------ccchHHHHHHhcCCCCCCCCCCCHHHHhhc
Q 001207 433 EDPSIKKVWHNYSFDNHVLEN--YGLKVSG--------------FHADTMHMARLWDSSRRTEGGYSLEALTGD 490 (1123)
Q Consensus 433 ed~~i~KV~HNaKfDl~vL~r--~GI~l~~--------------~vfDTmIAAyLLdp~~~~~gs~sLd~La~~ 490 (1123)
-++++.+|.|+..+|+..|-+ .|-+++. .++||..++..+.. . .-||..|++.
T Consensus 137 l~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~-l----~~gL~~la~~ 205 (252)
T 2d5r_A 137 LCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKN-L----KGGLQEVAEQ 205 (252)
T ss_dssp SSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTT-C----CSSHHHHHHH
T ss_pred cCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhcc-c----CCCHHHHHHH
Confidence 345689999999999988754 2444442 36788877776642 2 2468888764
No 37
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=78.06 E-value=18 Score=46.23 Aligned_cols=111 Identities=23% Similarity=0.286 Sum_probs=65.3
Q ss_pred hhhHhhhhhhhc--CCCceEEEecc-HHHHHHHH----HcCCCC----------------------------------CC
Q 001207 422 RDLLNEFAPFFE--DPSIKKVWHNY-SFDNHVLE----NYGLKV----------------------------------SG 460 (1123)
Q Consensus 422 ~evl~~Lk~~Le--d~~i~KV~HNa-KfDl~vL~----r~GI~l----------------------------------~~ 460 (1123)
.+.+..|..++. ||++ +++||. .||+.+|. .+|+.. .+
T Consensus 314 ~eLL~~F~~~i~~~DPDI-IvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~G 392 (919)
T 3iay_A 314 EEMLSNWRNFIIKVDPDV-IIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDG 392 (919)
T ss_dssp HHHHHHHHHHHHHHCCSE-EEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTT
T ss_pred HHHHHHHHHHHHHhCCCE-EEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcC
Confidence 456667777764 6764 789996 79999984 245541 11
Q ss_pred -ccchHHHHHHhcCCCCCCCCCCCHHHHhhcccccccccccccccccCCCCccccccccchhhhhcccccccCCCCCccc
Q 001207 461 -FHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKIS 539 (1123)
Q Consensus 461 -~vfDTmIAAyLLdp~~~~~gs~sLd~La~~~~~~~~~~Lg~~~~l~k~~~~eel~GK~s~k~lfgK~k~kkq~s~~kdw 539 (1123)
..+|++-...-.. ... +|+|++++.. +||..+ +++-+. .+.+++.
T Consensus 393 R~~lDl~~~~k~~~-~l~---sysL~~Va~~-------~Lg~~K--------~dv~~~-~I~~l~~-------------- 438 (919)
T 3iay_A 393 RLQLDLLQFIQREY-KLR---SYTLNAVSAH-------FLGEQK--------EDVHYS-IISDLQN-------------- 438 (919)
T ss_dssp CEEEEHHHHHHHHC-CCS---CCCHHHHHHH-------HHCCC--------------C-CHHHHHT--------------
T ss_pred eEEEEhHHHHHhhc-CCC---CCCHHHHHHH-------hcccCC--------CCCCHH-HHHHHHh--------------
Confidence 2568887765322 222 6999999986 554320 111010 0111110
Q ss_pred cccchhHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001207 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLK 574 (1123)
Q Consensus 540 ~~~pl~~l~~~~~e~~l~YAA~DA~~tlrL~e~L~ 574 (1123)
..+ ........|+..||..+++|+.++.
T Consensus 439 -~~~------~~~~~L~~Y~~~Da~l~~~L~~kl~ 466 (919)
T 3iay_A 439 -GDS------ETRRRLAVYCLKDAYLPLRLMEKLM 466 (919)
T ss_dssp -SCH------HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -cCh------hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 001 1245678999999999999998763
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=67.07 E-value=1.3e+02 Score=38.99 Aligned_cols=134 Identities=15% Similarity=0.041 Sum_probs=86.8
Q ss_pred eEEeecccchhHHHHHHhcCchhHHHHHH-----cCCchhHHHHhhhccccchhhccchhhhcccCCCCCCCCcccccch
Q 001207 868 SLIVADYGQLELRILAHLANCKSMLDAFK-----AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFA 942 (1123)
Q Consensus 868 ~lVsaDySQIELRIlAhlS~D~~Li~af~-----~G~DIH~~tA~~if~~~~e~v~~~e~~~~w~~~~~~~v~~~~~vt~ 942 (1123)
+=|.-|-|-==|-.+|.|.+|....++.+ .-.|||+.+|..+-.........+..+++|.. ..
T Consensus 821 lPVhqDGSCNGLQHyAALgrD~~Ga~~VNL~psd~PqDvYs~Va~~V~~~~~~Da~~~~~~a~~l~------------~~ 888 (1134)
T 3spa_A 821 LPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGMRVAQVLE------------GF 888 (1134)
T ss_dssp CEEEECCSSHHHHHHHHHTTCHHHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHTT------------TC
T ss_pred CccccCCCCcHHHHHHHHccChhhHHHhCCCCCCCcccHHHHHHHHHHHHHHhhhhcChHHHHHhh------------CC
Confidence 46889999888999999999998887765 23699999998653321111111111222211 12
Q ss_pred HHHHhhHHHhhhhhhCCChhhhhhhc--------CCCHH--------HHHHHHHHHHHhChhHH---HHHHHHHHHHHhC
Q 001207 943 SERRKAKMLNFSIAYGKTPVGLARDW--------KVSVE--------EAKKTVDLWYNERQEVL---TWQEARKKESRID 1003 (1123)
Q Consensus 943 ~~R~~AK~vnfGiiYG~G~~~LA~~l--------giS~~--------EAk~~i~~f~~~yP~Vk---~~~~~~~~~A~~~ 1003 (1123)
..|+..|+.+--++||.+.+|...++ .++.+ -|+.+.++..+.||+.+ .|+..+.......
T Consensus 889 I~RKvVKqtVMT~vYGvT~~Gar~QI~~~L~e~~~~~~~~~~~~a~Yla~~i~~si~e~f~~a~~im~WL~~~A~~i~~~ 968 (1134)
T 3spa_A 889 ITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHM 968 (1134)
T ss_dssp CCHHHHHHHHHHHHHCCSSSHHHHHHHHHHHTCTTSCTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred CChhhcccceEEeeecceehhHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45999999999999999999887654 12221 25677788888888654 5666665554443
Q ss_pred Ce---EecccCCc
Q 001207 1004 NH---VHTLLGRA 1013 (1123)
Q Consensus 1004 Gy---V~Tl~GRr 1013 (1123)
+- =.|+.|-.
T Consensus 969 ~~pV~WtTPlGlp 981 (1134)
T 3spa_A 969 GSVVEWVTPLGVP 981 (1134)
T ss_dssp TCCCEEECTTSCE
T ss_pred CCCEEEECCCCCE
Confidence 31 14566653
No 39
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=59.55 E-value=8.7 Score=46.38 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=38.6
Q ss_pred ceEEEeecccccccccCccccCcceEEEEeeeCCCcccCCCceEEEEeCCCCChhhhHhhhhhhhcCCCceEEEeccHHH
Q 001207 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFD 447 (1123)
Q Consensus 368 ~~VAfDTETtGLd~~~d~Ivg~g~ii~~sl~~~~~I~I~~~~~~~~ID~~~~~~~evl~~Lk~~Led~~i~KV~HNaKfD 447 (1123)
.+++||+||+. |+.... ++++++..+.. ...+|.+. .+..|..++.+.+...++||++||
T Consensus 7 ~i~~~D~Et~~-d~~~~~------~~~i~~~~~~~------~~~~~~~~-------~l~~fi~~~~~~~~~i~~hNl~FD 66 (575)
T 2py5_A 7 KMYSCAFETTT-KVEDCR------VWAYGYMNIED------HSEYKIGN-------SLDEFMAWVLKVQADLYFHNLKFA 66 (575)
T ss_dssp CEEEEEEEECC-BTTBCC------EEEEEEEESSC------TTCEEEES-------CHHHHHHHHHHHCCEEEETTHHHH
T ss_pred eEEEEEEEeec-CCCCCc------eEEEEEEeCCc------eEEEEech-------hHHHHHHHHHHcCCEEEEEChhhh
Confidence 58999999963 443333 24555554321 12344432 133444455444455889999999
Q ss_pred HHHHHH
Q 001207 448 NHVLEN 453 (1123)
Q Consensus 448 l~vL~r 453 (1123)
..+|.+
T Consensus 67 ~~~l~~ 72 (575)
T 2py5_A 67 GAFIIN 72 (575)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999853
No 40
>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A
Probab=52.42 E-value=2.1e+02 Score=36.26 Aligned_cols=133 Identities=13% Similarity=0.072 Sum_probs=77.7
Q ss_pred eEEeecccchhHHHHHHhcCchhHHHHHH-----cCCchhHHHHhhhccccchhhccchhh--hcccCCCCCCCC-----
Q 001207 868 SLIVADYGQLELRILAHLANCKSMLDAFK-----AGGDFHSRTAMNMYPHIRNAVETGQVL--LEWHGEDKPPVP----- 935 (1123)
Q Consensus 868 ~lVsaDySQIELRIlAhlS~D~~Li~af~-----~G~DIH~~tA~~if~~~~e~v~~~e~~--~~w~~~~~~~v~----- 935 (1123)
+=|..|-|-==|-.+|.|.+|.....+.+ .-.|||+.+|..+-.........+... ..-.+....+++
T Consensus 532 lPVhqDgSCnGLQHyAALgrD~~ga~~VNL~psd~PqDvYs~Va~~v~~~~~~da~~g~~~~~~~~~d~~~g~i~e~~~~ 611 (883)
T 1msw_D 532 LPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKL 611 (883)
T ss_dssp CCEEEECSCHHHHHHHHHHTCTTHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHTTSCCCCCCCSSSSSSCCSSCCCCC
T ss_pred cccccCCCCcHHHHHHHHhcChhhhhHhCCCCCCCCcchHHHHHHHHHHHHHHHHhcccccccccccccccccchhhccc
Confidence 34667777777888999999988776654 236999999976533211111000000 000000000000
Q ss_pred --------cccccchHHHHhhHHHhhhhhhCCChhhhhhhcCCC---------------------HHHHHHHHHHHHHhC
Q 001207 936 --------LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS---------------------VEEAKKTVDLWYNER 986 (1123)
Q Consensus 936 --------~~~~vt~~~R~~AK~vnfGiiYG~G~~~LA~~lgiS---------------------~~EAk~~i~~f~~~y 986 (1123)
.++ ....|+..|+.+-=++||.+..|...++.-. .--|+.+.+...+.|
T Consensus 612 ~~~~l~~~~l~--~~i~RKvvKqtVMT~vYGvT~~Ga~~qI~~~l~~~~~~~~~~~~~~~~~~~a~yla~~i~~ai~~~f 689 (883)
T 1msw_D 612 GTKALAGQWLA--YGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTV 689 (883)
T ss_dssp CHHHHHHHHHT--TCCCHHHHHHHHHGGGGTCCHHHHHHHHHHHTHHHHHHTSCCCSCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHh--cCCCHHHhccceeeeeeCCcchhhHHHHHHHHhhhhccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 000 1236999999999999999999987554200 012577788888889
Q ss_pred hh---HHHHHHHHHHHHHh
Q 001207 987 QE---VLTWQEARKKESRI 1002 (1123)
Q Consensus 987 P~---Vk~~~~~~~~~A~~ 1002 (1123)
|+ +..|+..+......
T Consensus 690 ~~a~~im~wL~~~a~~i~~ 708 (883)
T 1msw_D 690 VAAVEAMNWLKSAAKLLAA 708 (883)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 97 45666666554433
No 41
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=45.05 E-value=52 Score=43.18 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001207 553 ELWISYSAFDSINTLKLYKSLKK 575 (1123)
Q Consensus 553 e~~l~YAA~DA~~tlrL~e~L~~ 575 (1123)
.....|+..||..+++|+.++..
T Consensus 530 ~~L~~Ycl~Da~lt~~L~~kl~~ 552 (1193)
T 2gv9_A 530 GVIGEYCIQDSLLVGQLFFKFLP 552 (1193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999887743
No 42
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=31.20 E-value=63 Score=33.57 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=21.0
Q ss_pred hhhHhhhhhhhcC---CCceEEEeccHHHHHHHHH
Q 001207 422 RDLLNEFAPFFED---PSIKKVWHNYSFDNHVLEN 453 (1123)
Q Consensus 422 ~evl~~Lk~~Led---~~i~KV~HNaKfDl~vL~r 453 (1123)
.++...|..||.. +.+.++++...||..+|..
T Consensus 89 ~~i~~~L~~FL~~~~~~~~eLwa~~~~yD~~~L~q 123 (190)
T 4hec_A 89 QQIRLDLEEFLRIDGTDSIELWAWVGAYDHVALCQ 123 (190)
T ss_dssp HHHHHHHHHHTTTTSSCEEEEEESSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecccccHHHHHH
Confidence 4555667777753 2345677778888887764
No 43
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=28.26 E-value=1.5e+02 Score=38.46 Aligned_cols=72 Identities=22% Similarity=0.278 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHhcchHHHHHHhhhcC---cccC---HHHHH
Q 001207 552 RELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEG---MLVD---REYLS 625 (1123)
Q Consensus 552 ~e~~l~YAA~DA~~tlrL~e~L~~kL~e~~~~~~~~~~~~~~l~~Ly~~IEmPLv~VLa~ME~~G---I~VD---~e~L~ 625 (1123)
..+...|||.||.+|+++|..+.+...++ |+ +|. -++.|-.-| .+|| ..+++
T Consensus 322 fq~Lm~YCA~DV~aTh~V~~kl~P~F~er------cP--------------HPV--sfAgml~mgs~~LPVn~~W~~Yi~ 379 (1172)
T 3ikm_A 322 FQDLMQYCAQDVWATHEVFQQQLPLFLER------CP--------------HPV--TLAGMLEMGVSYLPVNQNWERYLA 379 (1172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT------SC--------------CSH--HHHHHHHHHSCCCCCCTHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHh------CC--------------Cch--hHHHHHHhCCccccCCccHHHHHH
Confidence 45678999999999999999999886653 21 233 355555555 6888 44555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001207 626 EIEKVARAEQEAAVNRFRKW 645 (1123)
Q Consensus 626 ~l~~~l~~e~e~le~~i~~~ 645 (1123)
+-+..++.-...+++.+...
T Consensus 380 ~ae~~Y~~~~~ev~~~L~~l 399 (1172)
T 3ikm_A 380 EAQGTYEELQREMKKSLMDL 399 (1172)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55544443333334344333
No 44
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=20.08 E-value=78 Score=26.95 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=25.2
Q ss_pred hhCCChhhhhhhcCCCHHHHHHHHHHHHH
Q 001207 956 AYGKTPVGLARDWKVSVEEAKKTVDLWYN 984 (1123)
Q Consensus 956 iYG~G~~~LA~~lgiS~~EAk~~i~~f~~ 984 (1123)
--||.+...|..+|+|.+.|+..++..|.
T Consensus 16 ~QGMTaGEVAA~f~w~Le~ar~aLeqLf~ 44 (68)
T 3i71_A 16 RQGMTAGEVAAHFGWPLEKARNALEQLFS 44 (68)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHhCCcHHHHHHHHHHHHh
Confidence 35999999999999999999998887653
Done!