BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001208
         (1123 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
           Cellular Modulator Of Immune Recognition Protein
          Length = 80

 Score = 76.6 bits (187), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/52 (55%), Positives = 37/52 (71%)

Query: 71  VCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAF 122
           +CRIC   GD E+PL  PC C+GS+ FVHQ CL QW+  S+ R CE+CK+ F
Sbjct: 17  ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68


>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
          Length = 60

 Score = 38.5 bits (88), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 71  VCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVC 118
           VC IC    +  N     C C+G ++ VH+ CL  WL  S    C++C
Sbjct: 8   VCWICNE--ELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQIC 53


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,087,040
Number of Sequences: 62578
Number of extensions: 1146569
Number of successful extensions: 2428
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2426
Number of HSP's gapped (non-prelim): 3
length of query: 1123
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1014
effective length of database: 8,152,335
effective search space: 8266467690
effective search space used: 8266467690
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)