Query 001208
Match_columns 1123
No_of_seqs 320 out of 934
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 18:44:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5183 SSM4 Protein involved 100.0 3.1E-80 6.7E-85 715.3 34.9 944 68-1083 11-1168(1175)
2 PHA02862 5L protein; Provision 99.7 4E-17 8.7E-22 160.5 4.9 65 69-143 2-66 (156)
3 PHA02825 LAP/PHD finger-like p 99.6 1.9E-15 4.1E-20 151.9 4.9 63 64-129 3-65 (162)
4 smart00744 RINGv The RING-vari 99.5 5.2E-15 1.1E-19 123.4 3.0 49 71-119 1-49 (49)
5 PF12906 RINGv: RING-variant d 99.4 2E-14 4.4E-19 118.8 0.6 47 72-118 1-47 (47)
6 KOG3053 Uncharacterized conser 99.4 1.4E-13 2.9E-18 146.7 5.5 108 64-177 15-130 (293)
7 KOG1609 Protein involved in mR 99.0 2.9E-10 6.2E-15 128.5 4.6 67 65-131 74-142 (323)
8 PF12861 zf-Apc11: Anaphase-pr 97.6 7.1E-05 1.5E-09 69.5 4.5 53 69-125 21-84 (85)
9 KOG4628 Predicted E3 ubiquitin 97.4 8.9E-05 1.9E-09 84.9 2.9 49 70-124 230-279 (348)
10 KOG1493 Anaphase-promoting com 97.3 0.00018 4E-09 64.7 2.8 53 70-125 21-83 (84)
11 PF13639 zf-RING_2: Ring finge 97.3 7.5E-05 1.6E-09 60.8 0.3 43 70-119 1-44 (44)
12 COG5219 Uncharacterized conser 96.9 0.00022 4.7E-09 87.8 -0.4 61 63-124 1463-1524(1525)
13 PHA02929 N1R/p28-like protein; 96.8 0.0011 2.4E-08 73.0 4.2 52 66-124 171-228 (238)
14 COG5243 HRD1 HRD ubiquitin lig 96.7 0.0013 2.9E-08 74.5 3.9 52 66-124 284-346 (491)
15 KOG1609 Protein involved in mR 96.7 0.001 2.2E-08 75.5 2.8 226 821-1073 95-323 (323)
16 PF11793 FANCL_C: FANCL C-term 96.6 0.00072 1.6E-08 61.0 1.2 57 69-125 2-68 (70)
17 COG5540 RING-finger-containing 96.6 0.0013 2.9E-08 73.0 3.0 51 65-122 319-371 (374)
18 PF12678 zf-rbx1: RING-H2 zinc 96.5 0.0012 2.5E-08 60.1 1.9 44 69-119 19-73 (73)
19 KOG0823 Predicted E3 ubiquitin 96.4 0.0049 1.1E-07 66.8 5.6 60 65-131 43-106 (230)
20 PLN03208 E3 ubiquitin-protein 96.3 0.0036 7.7E-08 66.7 4.1 56 67-129 16-88 (193)
21 COG5194 APC11 Component of SCF 95.7 0.0071 1.5E-07 55.3 2.6 55 69-125 20-83 (88)
22 PHA02926 zinc finger-like prot 95.6 0.011 2.4E-07 63.9 3.9 56 65-125 166-232 (242)
23 KOG0802 E3 ubiquitin ligase [P 95.1 0.012 2.6E-07 72.5 2.8 54 65-125 287-343 (543)
24 PF13920 zf-C3HC4_3: Zinc fing 94.9 0.013 2.9E-07 49.0 1.5 46 69-123 2-48 (50)
25 cd00162 RING RING-finger (Real 94.9 0.022 4.8E-07 45.0 2.7 43 71-121 1-44 (45)
26 KOG0828 Predicted E3 ubiquitin 94.8 0.018 3.9E-07 67.7 2.8 52 65-122 567-633 (636)
27 smart00184 RING Ring finger. E 94.1 0.041 8.9E-07 41.8 2.6 39 72-118 1-39 (39)
28 KOG0317 Predicted E3 ubiquitin 93.5 0.08 1.7E-06 59.3 4.5 53 64-125 234-286 (293)
29 PF00097 zf-C3HC4: Zinc finger 92.6 0.066 1.4E-06 42.7 1.7 40 72-118 1-41 (41)
30 smart00504 Ubox Modified RING 91.6 0.16 3.5E-06 44.0 3.0 47 70-125 2-48 (63)
31 KOG0827 Predicted E3 ubiquitin 91.3 0.14 2.9E-06 59.3 2.8 46 69-119 4-52 (465)
32 TIGR00599 rad18 DNA repair pro 90.6 0.43 9.3E-06 56.6 6.1 50 66-124 23-72 (397)
33 PF13923 zf-C3HC4_2: Zinc fing 88.5 0.24 5.2E-06 39.4 1.4 38 72-118 1-39 (39)
34 KOG0804 Cytoplasmic Zn-finger 88.3 0.17 3.7E-06 59.6 0.6 50 67-123 173-222 (493)
35 KOG1734 Predicted RING-contain 88.1 0.59 1.3E-05 52.0 4.5 58 67-127 222-285 (328)
36 KOG0825 PHD Zn-finger protein 86.8 0.61 1.3E-05 58.1 4.1 28 96-125 146-173 (1134)
37 KOG4265 Predicted E3 ubiquitin 86.7 0.52 1.1E-05 54.5 3.3 47 65-123 286-336 (349)
38 COG5236 Uncharacterized conser 85.1 1.4 3E-05 50.5 5.5 52 65-123 57-108 (493)
39 PF14634 zf-RING_5: zinc-RING 84.6 0.72 1.6E-05 37.7 2.3 43 71-120 1-44 (44)
40 PF14570 zf-RING_4: RING/Ubox 84.0 0.71 1.5E-05 39.0 2.0 46 72-123 1-48 (48)
41 KOG2930 SCF ubiquitin ligase, 80.7 1 2.2E-05 43.6 1.9 30 95-126 82-111 (114)
42 KOG1645 RING-finger-containing 80.6 1 2.2E-05 52.7 2.4 54 67-124 2-57 (463)
43 COG5175 MOT2 Transcriptional r 77.2 1.8 3.9E-05 49.5 2.9 52 67-124 12-65 (480)
44 KOG1428 Inhibitor of type V ad 76.8 1.7 3.6E-05 57.2 2.7 56 65-124 3482-3545(3738)
45 PLN02189 cellulose synthase 76.7 1.6 3.5E-05 56.9 2.7 54 67-124 32-88 (1040)
46 PLN02436 cellulose synthase A 72.3 2.3 5.1E-05 55.6 2.5 53 68-124 35-90 (1094)
47 KOG0956 PHD finger protein AF1 69.1 2.4 5.1E-05 52.6 1.5 56 70-126 6-76 (900)
48 PLN02195 cellulose synthase A 69.1 3.7 7.9E-05 53.5 3.2 55 66-123 3-59 (977)
49 KOG1973 Chromatin remodeling p 68.9 5.1 0.00011 45.6 4.1 49 73-122 220-269 (274)
50 PF05883 Baculo_RING: Baculovi 68.9 1.9 4.2E-05 43.8 0.6 41 68-108 25-67 (134)
51 KOG3268 Predicted E3 ubiquitin 68.7 4.6 0.0001 42.6 3.3 60 66-125 162-230 (234)
52 KOG1785 Tyrosine kinase negati 68.5 2 4.3E-05 50.1 0.7 53 66-125 366-418 (563)
53 PF07800 DUF1644: Protein of u 68.4 6.6 0.00014 41.0 4.3 40 68-109 1-48 (162)
54 TIGR00570 cdk7 CDK-activating 67.4 5.5 0.00012 45.9 3.9 51 69-125 3-56 (309)
55 KOG1952 Transcription factor N 65.1 8.7 0.00019 49.1 5.2 54 68-124 190-248 (950)
56 PLN02638 cellulose synthase A 64.5 4.7 0.0001 53.0 3.0 55 67-124 15-71 (1079)
57 PF10272 Tmpp129: Putative tra 58.6 9.6 0.00021 45.0 3.8 37 86-125 306-353 (358)
58 KOG0802 E3 ubiquitin ligase [P 58.5 6.8 0.00015 48.7 2.8 51 63-126 473-523 (543)
59 PF04564 U-box: U-box domain; 57.4 3.5 7.5E-05 37.5 0.0 49 69-125 4-52 (73)
60 KOG0287 Postreplication repair 56.9 9.2 0.0002 44.2 3.2 48 68-124 22-69 (442)
61 PF15227 zf-C3HC4_4: zinc fing 56.3 5.9 0.00013 32.3 1.2 40 72-118 1-42 (42)
62 KOG4692 Predicted E3 ubiquitin 56.0 5.5 0.00012 46.1 1.3 51 64-123 417-467 (489)
63 PF13445 zf-RING_UBOX: RING-ty 55.7 6 0.00013 32.7 1.1 40 72-116 1-43 (43)
64 KOG4445 Uncharacterized conser 54.6 5.5 0.00012 45.2 1.0 57 64-125 110-188 (368)
65 COG5432 RAD18 RING-finger-cont 53.9 5.9 0.00013 44.7 1.1 49 68-125 24-72 (391)
66 KOG0320 Predicted E3 ubiquitin 53.3 12 0.00025 40.0 3.0 50 67-123 129-178 (187)
67 PLN02400 cellulose synthase 53.1 7.9 0.00017 51.1 2.1 55 68-125 35-91 (1085)
68 PF05290 Baculo_IE-1: Baculovi 50.3 11 0.00024 38.3 2.3 55 68-125 79-134 (140)
69 KOG2164 Predicted E3 ubiquitin 50.1 15 0.00032 44.8 3.6 66 69-141 186-257 (513)
70 PLN02915 cellulose synthase A 46.5 15 0.00034 48.4 3.2 54 68-124 14-69 (1044)
71 PF14569 zf-UDP: Zinc-binding 45.3 21 0.00045 33.3 3.0 56 67-125 7-64 (80)
72 PF08746 zf-RING-like: RING-li 44.1 12 0.00027 30.8 1.2 22 97-118 22-43 (43)
73 COG5574 PEX10 RING-finger-cont 43.7 19 0.0004 40.7 2.9 50 69-126 215-265 (271)
74 KOG1002 Nucleotide excision re 43.5 12 0.00025 45.5 1.4 55 64-125 531-588 (791)
75 KOG1039 Predicted E3 ubiquitin 40.5 19 0.00042 42.3 2.6 53 67-124 159-222 (344)
76 KOG0956 PHD finger protein AF1 39.5 14 0.0003 46.2 1.3 58 67-124 115-183 (900)
77 smart00249 PHD PHD zinc finger 38.8 11 0.00023 29.9 0.1 30 71-104 1-30 (47)
78 KOG0824 Predicted E3 ubiquitin 35.6 25 0.00054 40.3 2.4 47 69-125 7-55 (324)
79 KOG4172 Predicted E3 ubiquitin 34.5 15 0.00033 32.0 0.3 42 70-122 8-53 (62)
80 KOG3899 Uncharacterized conser 34.2 25 0.00054 40.1 2.0 36 89-127 323-369 (381)
81 KOG0801 Predicted E3 ubiquitin 33.9 24 0.00052 37.0 1.7 26 67-92 175-201 (205)
82 KOG1962 B-cell receptor-associ 33.1 4.1E+02 0.0088 29.6 10.9 78 534-623 5-83 (216)
83 KOG2177 Predicted E3 ubiquitin 32.6 20 0.00044 39.1 1.1 47 65-120 9-55 (386)
84 KOG2034 Vacuolar sorting prote 32.4 19 0.00041 46.5 0.9 38 66-109 814-852 (911)
85 KOG3005 GIY-YIG type nuclease 31.5 44 0.00096 37.9 3.4 54 70-123 183-243 (276)
86 KOG2660 Locus-specific chromos 31.1 33 0.00071 39.9 2.4 52 66-125 12-63 (331)
87 COG5034 TNG2 Chromatin remodel 30.3 30 0.00065 38.9 1.9 22 97-120 246-269 (271)
88 PF10367 Vps39_2: Vacuolar sor 30.2 17 0.00037 34.5 0.0 34 67-105 76-109 (109)
89 PF05529 Bap31: B-cell recepto 27.7 5.2E+02 0.011 27.6 10.8 16 534-549 8-23 (192)
90 KOG0955 PHD finger protein BR1 25.5 25 0.00054 46.8 0.3 36 66-104 216-252 (1051)
91 KOG4159 Predicted E3 ubiquitin 24.7 41 0.0009 40.4 1.8 55 60-123 75-129 (398)
92 PF04515 Choline_transpo: Plas 22.1 7.8E+02 0.017 28.3 11.6 57 589-645 109-168 (334)
93 KOG0826 Predicted E3 ubiquitin 21.8 83 0.0018 36.7 3.4 52 65-124 296-347 (357)
94 PF11789 zf-Nse: Zinc-finger o 21.2 40 0.00086 29.6 0.6 43 69-117 11-53 (57)
95 PF02891 zf-MIZ: MIZ/SP-RING z 20.7 51 0.0011 28.1 1.1 35 84-121 11-50 (50)
96 PF13764 E3_UbLigase_R4: E3 ub 20.6 69 0.0015 41.9 2.8 26 60-85 459-486 (802)
97 KOG1941 Acetylcholine receptor 20.1 37 0.00079 40.2 0.2 49 66-119 362-412 (518)
No 1
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=100.00 E-value=3.1e-80 Score=715.27 Aligned_cols=944 Identities=18% Similarity=0.200 Sum_probs=573.7
Q ss_pred CCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeecccccCCCCCCchHHHHHHHHHH
Q 001208 68 EEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFIVGMAM 147 (1123)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~iy~~~~p~~lp~~~~~~~~~~ 147 (1123)
+.+.|||||+|+.+++||.|||+|+||+||+||+||++|+.+|++.+||+||++|+|+.+|+||||+.+|+.-+++++..
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~mP~~IPfsiL~rk~a~ 90 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMPQIIPFSILIRKVAD 90 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccCCCcccceehhHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999998877665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---------HH--hhhcc---cc--hhhHHhhhcccch
Q 001208 148 KAYHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEA---------QR--LFLSH---IS--TTVILTDCLHGFL 211 (1123)
Q Consensus 148 ~~~~~~~~~~~~~~v~~~wl~~~p~~~~~~~~~~f~~s~~~~---------~~--l~~~~---~s--~~~i~~D~~~G~~ 211 (1123)
...+. -|.++-..+|-.+.|..---+|. +|+...... .. ++.+. .+ .++.+.-.-.||-
T Consensus 91 t~~~~----trvllT~~~w~VL~~v~~~~Vwn-~~G~~YTm~~~~ssf~~~~~~~~v~~~~q~t~P~LtT~~~~~q~~q~ 165 (1175)
T COG5183 91 TGWKA----TRVLLTIGLWCVLQMVKWMGVWN-MFGKLYTMMLDGSSFNGDGYLFAVSTGLQDTDPELTTRAGFYQLLQN 165 (1175)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHh-hhcceeeeeecCCccCCCCcceeeecccccCChhhhhHHHHHHhhcc
Confidence 54332 45566677898888888777787 343221110 00 00000 01 1233333334555
Q ss_pred hhhhHHHHHHHHHHHHHHHHH-----HhhhcCCCCc-------------------------------ccc-chhhhhhhh
Q 001208 212 LSASIVFIFLGATSLRDYFRH-----LREIGGQDAE-------------------------------RED-EGDRNVARA 254 (1123)
Q Consensus 212 l~~~iv~~Fi~l~~lre~i~~-----~~~~~~q~~e-------------------------------~~~-~~~r~~~~~ 254 (1123)
.+...-++.|++...++|+.| .+++.+|..| +|. +.|||++|+
T Consensus 166 ~~F~~sfI~I~v~~~~~w~~qd~V~reD~l~~qifek~g~r~s~~~~~~R~r~R~~M~~~~~~E~~~re~~~l~rn~arq 245 (1175)
T COG5183 166 SGFRNSFIWIGVGIPLTWLAQDMVNREDCLLNQIFEKFGERLSDKDLMRRLRRRMLMNPRAILESISRESAQLERNTARQ 245 (1175)
T ss_pred cceEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccChHHHHHHHHHhcccCHHHHHHHHHHHHHHHhhccccc
Confidence 454455666777777777764 1222222100 000 113343222
Q ss_pred hc--------CCCCccCccc-C--------CC--------------CCCCCC-----CCC--------------------
Q 001208 255 AR--------RPPGQANRNF-A--------GE--------------GNAEDA-----GGA-------------------- 278 (1123)
Q Consensus 255 ~~--------~~~~~~~~~~-~--------~e--------------~~~~d~-----~~~-------------------- 278 (1123)
.. +++++.|+++ + .| +++.++ +++
T Consensus 246 ~~~h~r~n~r~~~~d~Nnnv~N~~~~N~p~~d~nd~rN~en~rpv~~~dh~~~~~~r~~vds~~~~~~~d~~ssI~~gSs 325 (1175)
T COG5183 246 QGEHARENGRDLSSDSNNNVINPVSDNVPSRDMNDSRNVENVRPVRSNDHMNSFLFRPIVDSISGMTLPDSFSSIIYGSS 325 (1175)
T ss_pred chhhhhhccccccccccccccCccccCCCCcCccccccccccccccccCccccccccccccccCCCcCccccceeccCcc
Confidence 11 1222111110 0 00 000000 000
Q ss_pred -----CCC-CCcchhhhc----c-----hhhHHhHHH----HHHhhHhhhhhhh--------------------cCCCCC
Q 001208 279 -----PGI-AGAGQMIRR----N-----AENVAARWE----MQAARLEAHVEQM--------------------FDGLDD 319 (1123)
Q Consensus 279 -----~~~-~~~~~~~~~----n-----~~~~~~~~~----~~~~~~e~~~~~~--------------------~~~~~d 319 (1123)
+++ ++.++.... + .+|..+-|. ...++.+....++ +...+.
T Consensus 326 s~n~~d~~~~~~~~~~s~~~~~D~~~~Iv~n~v~~wan~s~~ee~~~~~~~~rn~i~~~~~~V~~~~~~na~~ra~~~~~ 405 (1175)
T COG5183 326 SCNPTDRIHGSFGAFLSSMGLGDLYSRIVANGVAFWANTSCTEEARKRLGIGRNRIICIFMKVYLIILLNAFFRALTFGL 405 (1175)
T ss_pred cCCCCchhhhccccccCCcccccchhhhccCchhhhcchhhhHHHHHHhccccceeecccCceeecchhHHHHhhcchhh
Confidence 000 000000000 0 001111110 0000100000000 011111
Q ss_pred CCCCCCCchhhhhccccchHHHHHHHHH----------------HHHHHHHHHHHHHhccchhhHHHHHHHHh------h
Q 001208 320 ADGAEDVPFDELVGMQGPVFHLVENAFT----------------VLASNMIFLGVVIFLPFSLGRIILYHVSW------L 377 (1123)
Q Consensus 320 ~~~~ee~~~~ellGl~Gpi~~Llen~f~----------------vl~lntlfl~vf~fiPY~iG~~~l~~~~~------~ 377 (1123)
.|+.+.+.+++..|.+||+-+-.|+..- -+.+..+|+..-...|=.+||+..--+.+ .
T Consensus 406 ~d~~dFg~i~~~~~~~~~~d~~~q~pLvi~~~~~~~~~iay~iisiv~~~i~l~f~~~fptfIl~f~~~~i~fg~~~~i~ 485 (1175)
T COG5183 406 VDHYDFGNIMNKGMYALHLDNEYQSPLVIGISFIFHMSIAYTIISIVIRNIFLRFKRCFPTFILHFIPDDIDFGMDELIE 485 (1175)
T ss_pred hhHHHHhhHhhccccccCCCccccCceEEEEEEEeeehhhhhhhhhHHHHHHHHHHHhccceeEEecchhhhhhhHHHHH
Confidence 1222234477888888887765565432 11122245555555666667644311100 0
Q ss_pred hhcCCCCccccccc---hhhhhHHHHHHHhhhhhhhhhccccccccCCcc-chhhhhhcccchhhhhhhhcccchhhhhh
Q 001208 378 LSSASGPVLSSVMP---LTETALSLANITLKNALSAVTNLTSEGQEGGLL-GQVADVLKGNASEITEAANSTSASLSADL 453 (1123)
Q Consensus 378 ~~~~~~p~l~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 453 (1123)
-+..-+|.++..+- .+.+++.-+ +..|-+|+ +|+..-......|... ++.|.|.+-++
T Consensus 486 ~~l~~l~~Ls~~~V~y~~f~~lf~~v----------------~~~m~swi~dh~~H~I~y~~~g~~~--~~~s~siF~r~ 547 (1175)
T COG5183 486 ASLIGLSRLSLRLVGYLAFFTLFYGV----------------GLMMISWICDHMGHDIRYSVRGFLK--LSLSYSIFTRL 547 (1175)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhh----------------hHHHHHHHHhhhhhheehhhhhHHH--HHHHHHHHHHH
Confidence 00011122221100 011111111 11222222 2221000001111111 11122223333
Q ss_pred hhhhhcCCCcccchHHhHHhHHHHHHHHHHHHHHHHHhhhcCCCcccccccccchhhhhhcchHHHHHHHHHHHHHhHHH
Q 001208 454 LKEATMGTSRLSDVTTLAIGYMFIFSLVFFYLGIVALIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMIK 533 (1123)
Q Consensus 454 ~~~~~~~~s~~~~~~~il~GY~~i~~~~~~~l~~~~l~~~~rg~~~~~gr~~G~~~i~~~~~~~~r~~~~~l~~~~~~~K 533 (1123)
+.... ..++ |++.|||...-+..-++|.-..+. +.| ..|-.++.+++..+..|
T Consensus 548 l~~~~---i~l~---t~v~g~c~~~~L~~r~lgrenfl~--------------------N~p-~~RL~f~~l~~~~c~~K 600 (1175)
T COG5183 548 LYSNK---IFLD---TVVKGLCKVVRLEARMLGRENFLY--------------------NAP-MERLIFDKLMLMWCANK 600 (1175)
T ss_pred HHHHH---HHHH---HHHHHHHHHHHHHHhhhchhhccc--------------------cch-HHHHHHHHHHHHhhhhh
Confidence 32110 0111 667777765555554443221110 001 12445589999999999
Q ss_pred HHHHHHHHHHHhHhHHHHHHHhhhhhhcccc-hHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCeee
Q 001208 534 VAFLLVIELGVFPLMCGWWLDVCTIRMFGKS-MSERVQFFSVSPLASSLVHWVVGIVYMLQISIFVSLLRG-VLRNGVLY 611 (1123)
Q Consensus 534 V~~i~~iEl~vfPl~cG~~LDictlplf~~t-~~~r~~~~~~~p~~s~flhW~~Gt~ym~~fA~fv~~~R~-IlRpGVL~ 611 (1123)
+.+++.||+.+||+.||..||+|..--+.++ -..-.....-+|..|+|+.|.+|++||++||.|++|.|+ |.|||||+
T Consensus 601 ~~i~f~ieL~~fpi~~g~~l~~cl~~~~~~s~~~~L~~V~~~~p~~s~fi~w~Ig~~fm~~fa~yi~m~Rk~i~Rpgvl~ 680 (1175)
T COG5183 601 NKIFFRIELKAFPIRRGTELEICLYFNTHPSSDFALFYVPKLFPLRSSFIIWSIGLCFMGLFAGYIVMARKIIERPGVLA 680 (1175)
T ss_pred ccEEEEEEeeeccccchhhhhHHHhcccCccchhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceEE
Confidence 9999999999999999999999987433322 222234557789999999999999999999999999999 99999999
Q ss_pred eecCCCCCCCchhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCccccceeeccCCCccchhhHHHHHH
Q 001208 612 FLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMATSIFPLDISVSDPFTEIPADMLLFQI 691 (1123)
Q Consensus 612 FiRdp~DP~f~pi~d~l~~p~~~qlrri~~S~~vy~~~i~~~v~~pv~~~~~~~P~~lPl~~~~~~P~~e~p~DLLll~~ 691 (1123)
|||||+|||+||+||+|++|+..||+|+.+|++.|+++|+.|++.-.-.++ -+--.+|..+....-..+-|.|||.+-.
T Consensus 681 fiRdp~DPn~~~l~dvL~~pml~qL~rl~~s~i~ya~fiI~g~gs~~~mLk-S~g~~~p~~~~~~~i~Fntv~~ll~~~~ 759 (1175)
T COG5183 681 FIRDPGDPNIKILHDVLLYPMLAQLFRLSWSVIHYAMFIIRGEGSFPFMLK-SAGELCPHGIVNVYINFNTVYPLLGSLM 759 (1175)
T ss_pred EEcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH-hccccccccceeeeeecccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986333322 2344556655433333466788888777
Q ss_pred HHHHHHhhcchhhhHHHHHHHH---HHHhhccccCccccCCC--CCCCCCCCC----------------Cccc--ccccc
Q 001208 692 CIPFAIEHFKLRTTIKSLLRYW---FTAVGWALGLTDFLLPR--PEDNGGQEN----------------GNID--IRRDR 748 (1123)
Q Consensus 692 ~lP~~l~~~~pr~~lk~~~~~W---~~~~~~~LrLssfllg~--~ee~g~~~~----------------~~~~--~~~~~ 748 (1123)
++-...+.+||... +|| ++.++|.||||||+.|+ ++|||+-.| .+.+ ..+++
T Consensus 760 ~I~lS~~~~kple~-----ryWkT~~~lf~r~lrlSS~V~g~~~s~eegyy~n~f~~~ir~l~tKPk~~Eqae~G~k~~a 834 (1175)
T COG5183 760 VIVLSNDGTKPLEM-----RYWKTPLRLFLRFLRLSSIVEGILSSSEEGYYRNLFRALIRELFTKPKTLEQAELGCKINA 834 (1175)
T ss_pred HhhhccCCccHHHH-----HHHHhHHHHHHHHHhhhHhhcccccCCcccccHHHHHHHHHHHhcCCcchhhhhhhhhhhh
Confidence 66666677776433 477 56699999999999993 577775321 0111 12344
Q ss_pred hhhhccCCcccccCCCCccccC------CccccccccccccCCCCCCCCCCCCCCCC-CCCCcchHHHHHHHHHHHHHHH
Q 001208 749 NIEIRRDGLQVIPLGPDRALIG------MPAVDDINRGALVSGNSNVSEEYDGDEQS-DSDRYGFVLRIVLLLVIAWMTL 821 (1123)
Q Consensus 749 ~~~~~~dG~~v~~p~~d~~~~~------~~~~~d~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~F~~RI~~ll~l~wl~~ 821 (1123)
...+++||-+.++|..|-+..- ..++++ -.+- ++.+...|. +++.. ...|++|+.|...++.++|..+
T Consensus 835 ~~~fV~dg~~m~~ps~d~v~~~~g~m~Vpvt~~g--yeif--~ekkk~~Eq-n~~y~i~YvP~~FykRll~ll~lvw~~~ 909 (1175)
T COG5183 835 FISFVFDGWYMYNPSTDLVGLSNGEMAVPVTVVG--YEIF--VEKKKGDEQ-NDIYSIKYVPPGFYKRLLDLLYLVWRRV 909 (1175)
T ss_pred heeeecceEEEEcchhhhcccccceEEEEEEecc--hhhh--hhhcccccc-ccceEEEecCccHHHHHHHHHHHHHHHH
Confidence 4678899999999988765431 122211 1111 122222221 22222 2357899999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhHhhhccCCccCCCCccchHHHHHHHHHHHHHHHHHHHHHH-----HHhhhhhHHHHHHHHHHH
Q 001208 822 LVINSALIVVPISLGRALFNAIPLLPITHGVKCNDLYAFIIGSYVIWTAVAGARYSI-----EHVRTKRAAILFKQIWKW 896 (1123)
Q Consensus 822 ~~~~~~~~~vPl~iGR~l~~~~~~~~i~~~~~~~DlYaf~iG~yv~w~~~~~~~~~~-----~~~~~~r~~~~~~~~~~w 896 (1123)
+..-..++++|..+||.+-+.- .+| +.-||+||+.+|.|++-..-.....++ ++.|.--.++..+-+..-
T Consensus 910 ~~i~~~vtFi~~aL~~~v~s~~-F~~----VVK~~~YsY~~~yY~l~F~~~~~HA~Ve~ve~D~~Rdi~N~iN~~I~M~~ 984 (1175)
T COG5183 910 VNIDEEVTFISQALINFVCSFG-FLP----VVKLLLYSYLNIYYVLHFTTLDEHAVVEEVEHDIERDINNAINQGIFMAI 984 (1175)
T ss_pred HHhhhhheehHHHHHHHHHHhc-ccH----HHHHHHHHHHhhheEEeechhHhhHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999999998754 222 456899999999999633321112222 222332223322233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCC-CCceeeehhhhHHHHHHHHHHHHHHHhcCCCCCccchHHH
Q 001208 897 CGIVVKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVD-ESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRI 975 (1123)
Q Consensus 897 ~~~~lk~~~~~~~~~~viPlL~GlL~EL~vviPlr~~l~-~tpvi~l~QdWaLGvL~~Ki~~~~~~~~~~~~~~~~~w~~ 975 (1123)
..+++|+.++.++-+.+.|++.|...++|+-+ +++-.| -|-.++-.|+|++|..-++.....+. ..+..|.. .
T Consensus 985 ~~M~vKY~LmvFi~I~I~~i~~~v~W~v~t~~-~~a~yN~~Ti~v~~~ss~tIG~F~~~~~~~~Vv-Ss~~~F~t----k 1058 (1175)
T COG5183 985 FSMLVKYNLMVFIAIMIAVIRTMVSWVVLTDG-ILACYNYLTIRVFGNSSYTIGWFKYDESLLFVV-SSMVNFGT----K 1058 (1175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHhcceeEEEecccceEEeeeeccceeeeee-hhhHHHHH----H
Confidence 57889999998899999999999999999887 666555 56668889999999776665554443 12223321 3
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc-c-cccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 001208 976 KFERVREDGFSRLQGLWVLREIVFPIIMKLLTALCVPYVLARGVFPVL-G-YPLVVNSAVYRFAWLGCLCFSVLWFCAKR 1053 (1123)
Q Consensus 976 ~~~~v~~dG~~~~d~~~~~r~iv~Pv~~~ll~aL~vPyvla~~v~p~~-g-~~~~~~~~v~R~~yP~~l~~~~l~~~~~~ 1053 (1123)
.++-..||-|.++...-+++...+|.+..++.++.+|.++-..-.|.+ . .++.--++.||-++|..+.+..+.-....
T Consensus 1059 ~~k~~FRnR~~k~~~L~L~Kq~~l~~v~~vl~~iiL~~VF~~Vs~~~i~dI~~S~S~TL~~~~~~PIy~~LL~~~~~~~~ 1138 (1175)
T COG5183 1059 SLKLFFRNRFLKTMALELFKQGFLHMVIYVLPIIILSLVFLDVSTKQIIDISHSRSFTLSLNESFPIYFGLLIALESFTF 1138 (1175)
T ss_pred HHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccHHHhhccccccceeehhhhccHHHHHHHHHHHhHH
Confidence 356667788999999999999999999999999999977753323321 1 11112256899999986655544444555
Q ss_pred HHHHHHHHHHhhcccccccccccccCCccc
Q 001208 1054 FHVWFTNLHNSIRDDRYLIGRRLHNFGEDI 1083 (1123)
Q Consensus 1054 ~~~~~~~l~~~IRDd~YLVG~RL~Ny~~~~ 1083 (1123)
+-.--..|.|.+||+.|+||.|+||+|+..
T Consensus 1139 F~qat~~~~Q~~ks~v~~V~~~v~t~G~a~ 1168 (1175)
T COG5183 1139 FFQATVLFIQWFKSTVQNVKDEVYTKGRAL 1168 (1175)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhccccC
Confidence 555677899999999999999999999865
No 2
>PHA02862 5L protein; Provisional
Probab=99.66 E-value=4e-17 Score=160.54 Aligned_cols=65 Identities=28% Similarity=0.778 Sum_probs=57.7
Q ss_pred CCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeecccccCCCCCCchHHHHHH
Q 001208 69 EEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFIV 143 (1123)
Q Consensus 69 ~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~iy~~~~p~~lp~~~~~~ 143 (1123)
.+.||||+++++++ .+||+|+||.|+|||+||++|+++|++.+||+||++|.+++.|. |+++|..
T Consensus 2 ~diCWIC~~~~~e~---~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~yK-------pf~kW~~ 66 (156)
T PHA02862 2 SDICWICNDVCDER---NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKTYV-------SFKKWNW 66 (156)
T ss_pred CCEEEEecCcCCCC---cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEccc-------cHHHhhc
Confidence 47899999876432 69999999999999999999999999999999999999998874 7888864
No 3
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.56 E-value=1.9e-15 Score=151.93 Aligned_cols=63 Identities=27% Similarity=0.759 Sum_probs=55.3
Q ss_pred ccccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeeccccc
Q 001208 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYA 129 (1123)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~iy~ 129 (1123)
+..+.++.||||+++++ +..+||+|+||.|+||++||++|+++|++.+||+|+++|.++..|.
T Consensus 3 ~~s~~~~~CRIC~~~~~---~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~~k 65 (162)
T PHA02825 3 DVSLMDKCCWICKDEYD---VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKNYK 65 (162)
T ss_pred CcCCCCCeeEecCCCCC---CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEecC
Confidence 34567799999998743 4569999999999999999999999999999999999999987664
No 4
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.52 E-value=5.2e-15 Score=123.38 Aligned_cols=49 Identities=53% Similarity=1.325 Sum_probs=46.0
Q ss_pred cceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccc
Q 001208 71 VCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCK 119 (1123)
Q Consensus 71 ~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~ 119 (1123)
+||||++++++++++++||+|+||++++|++||++|+..+++.+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5999999667788999999999999999999999999999999999996
No 5
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.43 E-value=2e-14 Score=118.82 Aligned_cols=47 Identities=47% Similarity=1.220 Sum_probs=39.0
Q ss_pred ceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCccccc
Q 001208 72 CRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVC 118 (1123)
Q Consensus 72 CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC 118 (1123)
||||+++++++++|++||+|+||+++||++||++|+..+++.+||+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 99999987777789999999999999999999999999999999998
No 6
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=1.4e-13 Score=146.69 Aligned_cols=108 Identities=24% Similarity=0.610 Sum_probs=71.5
Q ss_pred ccccCCCcceEecCCCCCC--CCcccccccCCccccccHHHHHHHHHccC------CCcccccccceeecccccCCCCCC
Q 001208 64 EEEEEEEVCRICRNPGDPE--NPLRYPCACSGSIKFVHQDCLLQWLNHSN------ARQCEVCKHAFSFSPVYAENAPAR 135 (1123)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~--~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~------~~~CelC~~~f~~~~iy~~~~p~~ 135 (1123)
++.+.++.||||+..+++. ..+++||+|+|+.|+|||+||.+|+.+++ ...|++|+++|.+ +| |+.
T Consensus 15 ~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii--v~----P~l 88 (293)
T KOG3053|consen 15 DNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII--VF----PQL 88 (293)
T ss_pred CccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee--ec----ccc
Confidence 4567789999999765532 24799999999999999999999998763 4689999999986 33 433
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001208 136 LPFQEFIVGMAMKAYHVLQFFLRLSFVLSVWLLIIPFITFWI 177 (1123)
Q Consensus 136 lp~~~~~~~~~~~~~~~~~~~~~~~~v~~~wl~~~p~~~~~~ 177 (1123)
-|+...+..+-.-+.+.-.+.+-..+++++++-.+.+++..+
T Consensus 89 ~~~~~~Le~~d~~i~r~cp~l~~g~~v~~iYWsAVtyGA~T~ 130 (293)
T KOG3053|consen 89 GPFDRVLERLDILIFRLCPFLAAGIFVGSIYWSAVTYGAVTV 130 (293)
T ss_pred ChHHHHHHHhhhHHhhcChHHHHHHHhheeehhhhhhcceee
Confidence 333332222211222223344555566666556666665544
No 7
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=98.98 E-value=2.9e-10 Score=128.45 Aligned_cols=67 Identities=31% Similarity=0.754 Sum_probs=57.2
Q ss_pred cccCCCcceEecCCCCCCC--CcccccccCCccccccHHHHHHHHHccCCCcccccccceeecccccCC
Q 001208 65 EEEEEEVCRICRNPGDPEN--PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAEN 131 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~--~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~iy~~~ 131 (1123)
..+++..||||+++.+..+ ++..||.|+|+.+++|+.|+++|+..+++..||+|++.|.....+.+.
T Consensus 74 ~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~ 142 (323)
T KOG1609|consen 74 SPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKP 142 (323)
T ss_pred CCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecc
Confidence 3344689999998766544 799999999999999999999999999999999999999987655433
No 8
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.59 E-value=7.1e-05 Score=69.46 Aligned_cols=53 Identities=38% Similarity=0.861 Sum_probs=39.6
Q ss_pred CCcceEecCCCCCCC----------CcccccccCCccccccHHHHHHHHHcc-CCCcccccccceeec
Q 001208 69 EEVCRICRNPGDPEN----------PLRYPCACSGSIKFVHQDCLLQWLNHS-NARQCEVCKHAFSFS 125 (1123)
Q Consensus 69 ~~~CRIC~~~~~~~~----------~L~~PC~C~Gsi~~vH~~CL~~Wl~~s-~~~~CelC~~~f~~~ 125 (1123)
++.|-||+...+..- |++ -+.|+ +.+|..|+.+|++.. .+..||+|+++|+++
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCcee-eccCc---cHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 678999998765322 221 13444 579999999999874 468999999999985
No 9
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=8.9e-05 Score=84.91 Aligned_cols=49 Identities=29% Similarity=0.735 Sum_probs=41.8
Q ss_pred CcceEecCCCCCCCCc-ccccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 70 EVCRICRNPGDPENPL-RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 70 ~~CRIC~~~~~~~~~L-~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
+.|-||+++.+.++.| +-||+ |.+|..|++.||... ...||+||+.-..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 8999999999888877 58987 679999999999876 4579999996543
No 10
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00018 Score=64.75 Aligned_cols=53 Identities=38% Similarity=0.907 Sum_probs=39.5
Q ss_pred CcceEecCCCCCCCCcccccccCC---------ccccccHHHHHHHHHcc-CCCcccccccceeec
Q 001208 70 EVCRICRNPGDPENPLRYPCACSG---------SIKFVHQDCLLQWLNHS-NARQCEVCKHAFSFS 125 (1123)
Q Consensus 70 ~~CRIC~~~~~~~~~L~~PC~C~G---------si~~vH~~CL~~Wl~~s-~~~~CelC~~~f~~~ 125 (1123)
++|-|||.+.+...|- |+=+| +.+.+|..|+.+|+..+ ++..||+|+++|+++
T Consensus 21 e~CGiCRm~Fdg~Cp~---Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 21 ETCGICRMPFDGCCPD---CKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFK 83 (84)
T ss_pred CccceEecccCCcCCC---CcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEec
Confidence 3999999876543332 33333 23679999999999875 467999999999985
No 11
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.25 E-value=7.5e-05 Score=60.81 Aligned_cols=43 Identities=28% Similarity=0.865 Sum_probs=31.6
Q ss_pred CcceEecCCCCCCC-CcccccccCCccccccHHHHHHHHHccCCCcccccc
Q 001208 70 EVCRICRNPGDPEN-PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCK 119 (1123)
Q Consensus 70 ~~CRIC~~~~~~~~-~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~ 119 (1123)
+.|-||+++.++++ ....|| .+.+|.+|+.+|++.+ .+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C-----~H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPC-----GHVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETT-----SEEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccC-----CCeeCHHHHHHHHHhC--CcCCccC
Confidence 47999998765433 344554 2789999999999885 4999996
No 12
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.88 E-value=0.00022 Score=87.84 Aligned_cols=61 Identities=26% Similarity=0.625 Sum_probs=47.4
Q ss_pred cccccCCCcceEecCCCC-CCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 63 EEEEEEEEVCRICRNPGD-PENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 63 ~~~~~~~~~CRIC~~~~~-~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
++.-++.+.|.||..--+ -++.+- -=+|..|.+.+|-.||.+|+++|++.+||+|+.++.|
T Consensus 1463 ~~~fsG~eECaICYsvL~~vdr~lP-skrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1463 DEKFSGHEECAICYSVLDMVDRSLP-SKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred hhhcCCcchhhHHHHHHHHHhccCC-ccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 345677899999986433 233332 2467777788999999999999999999999988865
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.80 E-value=0.0011 Score=73.03 Aligned_cols=52 Identities=19% Similarity=0.542 Sum_probs=38.1
Q ss_pred ccCCCcceEecCCCCCCC------CcccccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 66 EEEEEVCRICRNPGDPEN------PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~------~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
.+++..|.||+++..... ....+|. |.+|.+|+.+|++. +.+||+|+.++..
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~--~~tCPlCR~~~~~ 228 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKE--KNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhc--CCCCCCCCCEeeE
Confidence 345689999998643221 1234553 78999999999975 4699999999875
No 14
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0013 Score=74.55 Aligned_cols=52 Identities=31% Similarity=0.931 Sum_probs=39.3
Q ss_pred ccCCCcceEecCC-CCCC-CC---------cccccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 66 EEEEEVCRICRNP-GDPE-NP---------LRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 66 ~~~~~~CRIC~~~-~~~~-~~---------L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
.++...|-||++| -+++ +| -.-||. |..|-+||+.|+.++ .+||+||.+..+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERq--QTCPICr~p~if 346 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQ--QTCPICRRPVIF 346 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhc--cCCCcccCcccc
Confidence 5667999999987 2322 22 345664 679999999999965 699999988655
No 15
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=96.66 E-value=0.001 Score=75.52 Aligned_cols=226 Identities=24% Similarity=0.271 Sum_probs=150.5
Q ss_pred HHHHHHHHhhhhhhhhhhHhhhccCCccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---HH
Q 001208 821 LLVINSALIVVPISLGRALFNAIPLLPITHGVKCNDLYAFIIGSYVIWTAVAGARYSIEHVRTKRAAILFKQIWK---WC 897 (1123)
Q Consensus 821 ~~~~~~~~~~vPl~iGR~l~~~~~~~~i~~~~~~~DlYaf~iG~yv~w~~~~~~~~~~~~~~~~r~~~~~~~~~~---w~ 897 (1123)
.....+.+-..+-.++|..+..|- . +.=...+.+||..++...-.....+...... ...... +.
T Consensus 95 ~l~~pC~C~g~l~~vH~~cl~~W~--~----------~~~~~~CeiC~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 161 (323)
T KOG1609|consen 95 LLISPCSCKGSLAYVHRSCLEKWF--S----------IKGNITCEICKSFFINVGTKLKPLIVISKVR-SGALSERTLSG 161 (323)
T ss_pred ccccCccccCcHHHHHHHHHHhhh--c----------cccCeeeecccccceecceeecceeehhhhh-hHhhhheeeeh
Confidence 345566667777777888888872 1 1122334556665433211111111111100 001111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCceeeehhhhHHHHHHHHHHHHHHHhcCCCCCccchHHHHH
Q 001208 898 GIVVKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRIKF 977 (1123)
Q Consensus 898 ~~~lk~~~~~~~~~~viPlL~GlL~EL~vviPlr~~l~~tpvi~l~QdWaLGvL~~Ki~~~~~~~~~~~~~~~~~w~~~~ 977 (1123)
...++......+...+.|++.|.+.|+.+..|.+. .+.+.....++|++|+...+++.....++..+ ...+|+.++
T Consensus 162 ~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~ 237 (323)
T KOG1609|consen 162 MILLKVALLVAIIVSVLPLLLGLLFELVLGVPSLV--VESPLANPLALVALGLLGFKIWIFIILSGYIF--ILKSLKVKL 237 (323)
T ss_pred hhhhhhhhhheeeEEeehhhhhhhHHHhccccccc--cCCCccCchhheeecceechHHHHHHHHHHHH--HHHHHHHHH
Confidence 12334444444455679999999999999988877 77888888999999999999999998876544 345666778
Q ss_pred HHHHHhhccCChhhHHHHHHHHhHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001208 978 ERVREDGFSRLQGLWVLREIVFPIIMKLLTALCVPYVLARGVFPVLGYPLVVNSAVYRFAWLGCLCFSVLWFCAKRFHVW 1057 (1123)
Q Consensus 978 ~~v~~dG~~~~d~~~~~r~iv~Pv~~~ll~aL~vPyvla~~v~p~~g~~~~~~~~v~R~~yP~~l~~~~l~~~~~~~~~~ 1057 (1123)
..++..++...-..++ .+++.. .+....+++|.++...+|.++.+.. +..++........+........+
T Consensus 238 ~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 307 (323)
T KOG1609|consen 238 VLIRAVIFLLLIKVVL-AAVVIL---QLLLQRLVGYLLANSLTPLYIVSLL------MFIVISRLGLSSLEMSVPRLATL 307 (323)
T ss_pred hHhhhhccchhhhhhh-hhHHHH---HHHHhcceeEEEecccceeeecccH------HHHhhhhhhHHHHHhhHHHHHHH
Confidence 8888888888777777 666665 7778889999999999998875432 55666665556666677777777
Q ss_pred HHHHHHhhcccccccc
Q 001208 1058 FTNLHNSIRDDRYLIG 1073 (1123)
Q Consensus 1058 ~~~l~~~IRDd~YLVG 1073 (1123)
....++..++|+|-+|
T Consensus 308 ~~~~~~~~~~~~~~~~ 323 (323)
T KOG1609|consen 308 VLSSLKTVRLDRYKVG 323 (323)
T ss_pred HHHHHHHHHHHhhhcC
Confidence 7777888999988765
No 16
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.64 E-value=0.00072 Score=60.97 Aligned_cols=57 Identities=25% Similarity=0.410 Sum_probs=26.5
Q ss_pred CCcceEecCCCC-CCCCcccccccCCccccccHHHHHHHHHccC---------CCcccccccceeec
Q 001208 69 EEVCRICRNPGD-PENPLRYPCACSGSIKFVHQDCLLQWLNHSN---------ARQCEVCKHAFSFS 125 (1123)
Q Consensus 69 ~~~CRIC~~~~~-~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~---------~~~CelC~~~f~~~ 125 (1123)
+..|.||++... .++....-|.-..+.+.+|..||.+|+.... ...||.|+.+.+.+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 467999997643 2222234454444456799999999997532 13699999998764
No 17
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0013 Score=72.99 Aligned_cols=51 Identities=29% Similarity=0.630 Sum_probs=39.8
Q ss_pred cccCCCcceEecCCCCCCCC-cccccccCCccccccHHHHHHHHH-ccCCCcccccccce
Q 001208 65 EEEEEEVCRICRNPGDPENP-LRYPCACSGSIKFVHQDCLLQWLN-HSNARQCEVCKHAF 122 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~-L~~PC~C~Gsi~~vH~~CL~~Wl~-~s~~~~CelC~~~f 122 (1123)
+...+-.|-||++.....+. .+.||+ |-+|..|+++|+. ++ .+||+|+++.
T Consensus 319 ea~~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y~--~~CPvCrt~i 371 (374)
T COG5540 319 EADKGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGYS--NKCPVCRTAI 371 (374)
T ss_pred hcCCCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhhc--ccCCccCCCC
Confidence 44566899999987654444 479988 5699999999998 54 4899999764
No 18
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.54 E-value=0.0012 Score=60.08 Aligned_cols=44 Identities=36% Similarity=0.983 Sum_probs=29.8
Q ss_pred CCcceEecCCCCCC----------CCc-ccccccCCccccccHHHHHHHHHccCCCcccccc
Q 001208 69 EEVCRICRNPGDPE----------NPL-RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCK 119 (1123)
Q Consensus 69 ~~~CRIC~~~~~~~----------~~L-~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~ 119 (1123)
++.|-||+++.++. .++ ..+| .|.+|..||.+|++.++ +||+|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C-----~H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPC-----GHIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETT-----SEEEEHHHHHHHHTTSS--B-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEeccc-----CCCEEHHHHHHHHhcCC--cCCCCC
Confidence 34599999865211 111 1233 47899999999998765 999997
No 19
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0049 Score=66.83 Aligned_cols=60 Identities=30% Similarity=0.719 Sum_probs=46.6
Q ss_pred cccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHcc-CCCcccccccceeec---ccccCC
Q 001208 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS-NARQCEVCKHAFSFS---PVYAEN 131 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s-~~~~CelC~~~f~~~---~iy~~~ 131 (1123)
.+...-.|-||++.. .+|.+++|. |.+==.||.||+..+ +++.||+||.+...+ |+|--.
T Consensus 43 ~~~~~FdCNICLd~a--kdPVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG 106 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLA--KDPVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRG 106 (230)
T ss_pred CCCCceeeeeecccc--CCCEEeecc-----cceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccC
Confidence 345668899999754 579999986 667779999999876 567889999998764 566543
No 20
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.31 E-value=0.0036 Score=66.69 Aligned_cols=56 Identities=27% Similarity=0.640 Sum_probs=41.7
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHcc--------------CCCcccccccceee---ccccc
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS--------------NARQCEVCKHAFSF---SPVYA 129 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s--------------~~~~CelC~~~f~~---~~iy~ 129 (1123)
+++-.|-||++.. .+|.+.+|. |.++..|+.+|+..+ +...||+|+..+.. .|+|.
T Consensus 16 ~~~~~CpICld~~--~dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 16 GGDFDCNICLDQV--RDPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred CCccCCccCCCcC--CCcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 3457899999754 467778764 679999999998632 34689999998754 35553
No 21
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=95.72 E-value=0.0071 Score=55.28 Aligned_cols=55 Identities=24% Similarity=0.516 Sum_probs=36.8
Q ss_pred CCcceEecCCCCCCCCcccc-----cccCC----ccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 69 EEVCRICRNPGDPENPLRYP-----CACSG----SIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 69 ~~~CRIC~~~~~~~~~L~~P-----C~C~G----si~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
-+.|-|||....+..+--.+ =.|+- +.+.+|-.|+.+||+++ ..||+|+++|.+.
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk--~~CPld~q~w~~~ 83 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK--GVCPLDRQTWVLA 83 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC--CCCCCCCceeEEe
Confidence 48899998764322221000 01111 33679999999999984 5999999999874
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=95.57 E-value=0.011 Score=63.85 Aligned_cols=56 Identities=20% Similarity=0.493 Sum_probs=40.0
Q ss_pred cccCCCcceEecCCCC----C-CC--CcccccccCCccccccHHHHHHHHHccC----CCcccccccceeec
Q 001208 65 EEEEEEVCRICRNPGD----P-EN--PLRYPCACSGSIKFVHQDCLLQWLNHSN----ARQCEVCKHAFSFS 125 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~----~-~~--~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~----~~~CelC~~~f~~~ 125 (1123)
..+.++.|-||++.-. + ++ .+..+|. |.+...|+.+|.+.+. ...||+|+.+|.+-
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 3455799999997531 1 11 2455655 6799999999998642 46799999999863
No 23
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.012 Score=72.52 Aligned_cols=54 Identities=28% Similarity=0.710 Sum_probs=40.7
Q ss_pred cccCCCcceEecCCCCCC-C--CcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 65 EEEEEEVCRICRNPGDPE-N--PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~-~--~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
..+..+.|.||+++...+ + +-+.||. |.+|..||++|++. +.+||.|+.++.-.
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er--~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFER--QQTCPTCRTVLYDY 343 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHH--hCcCCcchhhhhcc
Confidence 456679999999875432 2 4456665 78999999999997 57999999954433
No 24
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=94.87 E-value=0.013 Score=49.03 Aligned_cols=46 Identities=22% Similarity=0.722 Sum_probs=36.0
Q ss_pred CCcceEecCCCCCCCCcccccccCCcccc-ccHHHHHHHHHccCCCccccccccee
Q 001208 69 EEVCRICRNPGDPENPLRYPCACSGSIKF-VHQDCLLQWLNHSNARQCEVCKHAFS 123 (1123)
Q Consensus 69 ~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~-vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1123)
+..|.||++.. .+....||. |. +..+|..+|++ ++..||+|+.+++
T Consensus 2 ~~~C~iC~~~~--~~~~~~pCg-----H~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENP--RDVVLLPCG-----HLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSB--SSEEEETTC-----EEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccC--CceEEeCCC-----ChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 47899998753 457789986 55 89999999999 5679999998764
No 25
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=94.86 E-value=0.022 Score=44.96 Aligned_cols=43 Identities=26% Similarity=0.811 Sum_probs=31.6
Q ss_pred cceEecCCCCCCCCc-ccccccCCccccccHHHHHHHHHccCCCcccccccc
Q 001208 71 VCRICRNPGDPENPL-RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHA 121 (1123)
Q Consensus 71 ~CRIC~~~~~~~~~L-~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~ 121 (1123)
.|.||++.. .++. ..||. +.+|.+|+.+|++. ++..|++|+..
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh--hCceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 488998764 2233 34454 56999999999986 56789999975
No 26
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.018 Score=67.74 Aligned_cols=52 Identities=33% Similarity=0.745 Sum_probs=38.0
Q ss_pred cccCCCcceEecCCCC------C---------CCCcccccccCCccccccHHHHHHHHHccCCCcccccccce
Q 001208 65 EEEEEEVCRICRNPGD------P---------ENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAF 122 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~------~---------~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f 122 (1123)
-.+....|-||...-+ + .+.+.+||+ |.+|..||++|+... +..|+.|+...
T Consensus 567 ~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~y-kl~CPvCR~pL 633 (636)
T KOG0828|consen 567 FVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTY-KLICPVCRCPL 633 (636)
T ss_pred hhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhh-cccCCccCCCC
Confidence 3566789999986532 1 123456876 689999999999853 36899999753
No 27
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=94.11 E-value=0.041 Score=41.82 Aligned_cols=39 Identities=31% Similarity=0.960 Sum_probs=29.6
Q ss_pred ceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCccccc
Q 001208 72 CRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVC 118 (1123)
Q Consensus 72 CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC 118 (1123)
|.||++. ..++...||. +.+|.+|+.+|++ .++..|++|
T Consensus 1 C~iC~~~--~~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE--LKDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccC--CCCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 7789876 2456667765 5699999999998 455689987
No 28
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=0.08 Score=59.30 Aligned_cols=53 Identities=26% Similarity=0.720 Sum_probs=41.4
Q ss_pred ccccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
...+....|-+|++.- ++|--.||. |.+==+|++.|.+++. .||+|+.+++-.
T Consensus 234 ~i~~a~~kC~LCLe~~--~~pSaTpCG-----HiFCWsCI~~w~~ek~--eCPlCR~~~~ps 286 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENR--SNPSATPCG-----HIFCWSCILEWCSEKA--ECPLCREKFQPS 286 (293)
T ss_pred cCCCCCCceEEEecCC--CCCCcCcCc-----chHHHHHHHHHHcccc--CCCcccccCCCc
Confidence 3445568999999753 467777876 6788899999999764 599999998754
No 29
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=92.63 E-value=0.066 Score=42.67 Aligned_cols=40 Identities=38% Similarity=1.035 Sum_probs=32.0
Q ss_pred ceEecCCCCCCCCc-ccccccCCccccccHHHHHHHHHccCCCccccc
Q 001208 72 CRICRNPGDPENPL-RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVC 118 (1123)
Q Consensus 72 CRIC~~~~~~~~~L-~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC 118 (1123)
|.||++..+ ++. ..||. |.++.+|+.+|++.++...|++|
T Consensus 1 C~iC~~~~~--~~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE--DPVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS--SEEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc--CCCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 788987543 344 67776 67999999999998888899998
No 30
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=91.57 E-value=0.16 Score=43.98 Aligned_cols=47 Identities=15% Similarity=0.305 Sum_probs=37.0
Q ss_pred CcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 70 EVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 70 ~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
-.|.||.+.- ++|...||. +-+-++|+.+|++. +..||+|+.++..+
T Consensus 2 ~~Cpi~~~~~--~~Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~~~ 48 (63)
T smart00504 2 FLCPISLEVM--KDPVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLTHE 48 (63)
T ss_pred cCCcCCCCcC--CCCEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCChh
Confidence 3699998754 458878763 67999999999986 56899999988543
No 31
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.28 E-value=0.14 Score=59.31 Aligned_cols=46 Identities=28% Similarity=0.755 Sum_probs=31.9
Q ss_pred CCcceEecCCCCCCCCc--ccccccCCccccccHHHHHHHHHccCC-Ccccccc
Q 001208 69 EEVCRICRNPGDPENPL--RYPCACSGSIKFVHQDCLLQWLNHSNA-RQCEVCK 119 (1123)
Q Consensus 69 ~~~CRIC~~~~~~~~~L--~~PC~C~Gsi~~vH~~CL~~Wl~~s~~-~~CelC~ 119 (1123)
...|.||-+.-.-+..+ ++-|. +.+|..||.||+..... +.||+|+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 36799994332222233 33332 57999999999998755 7999999
No 32
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.58 E-value=0.43 Score=56.63 Aligned_cols=50 Identities=18% Similarity=0.457 Sum_probs=39.2
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
-+..-.|.||.+.. .+|.+.||. |.+...|+.+|+... ..|++|+..+..
T Consensus 23 Le~~l~C~IC~d~~--~~PvitpCg-----H~FCs~CI~~~l~~~--~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFF--DVPVLTSCS-----HTFCSLCIRRCLSNQ--PKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhh--hCccCCCCC-----CchhHHHHHHHHhCC--CCCCCCCCcccc
Confidence 34567999998754 357777765 678899999999764 489999999864
No 33
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=88.53 E-value=0.24 Score=39.36 Aligned_cols=38 Identities=29% Similarity=0.864 Sum_probs=27.7
Q ss_pred ceEecCCCCCCCC-cccccccCCccccccHHHHHHHHHccCCCccccc
Q 001208 72 CRICRNPGDPENP-LRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVC 118 (1123)
Q Consensus 72 CRIC~~~~~~~~~-L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC 118 (1123)
|.||++.. .+| ...+|. |.+.++|+++|++. +.+|++|
T Consensus 1 C~iC~~~~--~~~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDEL--RDPVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB---SSEEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcc--cCcCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 77897653 346 356665 77999999999998 3799988
No 34
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.29 E-value=0.17 Score=59.62 Aligned_cols=50 Identities=26% Similarity=0.620 Sum_probs=35.3
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCccccccccee
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1123)
-|-++|-+|++.-+++-.-+.|=.|. |-+|-.||++|=. .+|++|++--+
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~---Hsfh~~cl~~w~~----~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCN---HSFHCSCLMKWWD----SSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecc---cccchHHHhhccc----CcChhhhhhcC
Confidence 35699999998665443333344444 3499999999965 58999997543
No 35
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.09 E-value=0.59 Score=52.00 Aligned_cols=58 Identities=22% Similarity=0.605 Sum_probs=40.8
Q ss_pred cCCCcceEecCCCC---CCCCc---ccccccCCccccccHHHHHHHHHccCCCcccccccceeeccc
Q 001208 67 EEEEVCRICRNPGD---PENPL---RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPV 127 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~---~~~~L---~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~i 127 (1123)
.+...|.+|-..-+ +++-+ .+-=.|. |-+|+.|+.-|---.++.+||-||.+...+.-
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCn---HvFHEfCIrGWcivGKkqtCPYCKekVdl~rm 285 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCN---HVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRM 285 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecc---cchHHHhhhhheeecCCCCCchHHHHhhHhhh
Confidence 44589999965432 11111 2333444 56999999999999999999999998877543
No 36
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=86.81 E-value=0.61 Score=58.06 Aligned_cols=28 Identities=21% Similarity=0.572 Sum_probs=23.6
Q ss_pred ccccHHHHHHHHHccCCCcccccccceeec
Q 001208 96 KFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 96 ~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
+|+|..|+..|-+. ..+|++|+.+|.-.
T Consensus 146 H~FC~~Ci~sWsR~--aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 146 HYFCEECVGSWSRC--AQTCPVDRGEFGEV 173 (1134)
T ss_pred cccHHHHhhhhhhh--cccCchhhhhhhee
Confidence 68999999999875 46999999999754
No 37
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.73 E-value=0.52 Score=54.51 Aligned_cols=47 Identities=28% Similarity=0.764 Sum_probs=32.0
Q ss_pred cccCCCcceEecCCCCCCCCccccc----ccCCccccccHHHHHHHHHccCCCccccccccee
Q 001208 65 EEEEEEVCRICRNPGDPENPLRYPC----ACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC----~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1123)
+.++++.|-||+++. -+.++.|| .|+| |-+.-.- .+..||+|++.+.
T Consensus 286 ~~~~gkeCVIClse~--rdt~vLPCRHLCLCs~--------Ca~~Lr~--q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 286 ESESGKECVICLSES--RDTVVLPCRHLCLCSG--------CAKSLRY--QTNNCPICRQPIE 336 (349)
T ss_pred cccCCCeeEEEecCC--cceEEecchhhehhHh--------HHHHHHH--hhcCCCccccchH
Confidence 567789999998764 33455554 5664 6555442 2358999999875
No 38
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=85.13 E-value=1.4 Score=50.49 Aligned_cols=52 Identities=23% Similarity=0.605 Sum_probs=34.2
Q ss_pred cccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCccccccccee
Q 001208 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1123)
.+|+...|-||-...+-+ -+.||.-+ .-..|-.+-..--++..|.+|+++..
T Consensus 57 tDEen~~C~ICA~~~TYs--~~~PC~H~-----~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 57 TDEENMNCQICAGSTTYS--ARYPCGHQ-----ICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred cccccceeEEecCCceEE--EeccCCch-----HHHHHHHHHHHHHhccCCCccccccc
Confidence 356678999997654322 25788632 22356555555456789999999865
No 39
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=84.58 E-value=0.72 Score=37.72 Aligned_cols=43 Identities=21% Similarity=0.607 Sum_probs=33.9
Q ss_pred cceEecCCCC-CCCCcccccccCCccccccHHHHHHHHHccCCCccccccc
Q 001208 71 VCRICRNPGD-PENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKH 120 (1123)
Q Consensus 71 ~CRIC~~~~~-~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~ 120 (1123)
.|-||++..+ ...+.+.+|. |.+.++|+.+.. .+...|++|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 3889998773 3346678875 779999999999 56789999984
No 40
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=84.01 E-value=0.71 Score=38.98 Aligned_cols=46 Identities=24% Similarity=0.691 Sum_probs=22.1
Q ss_pred ceEecCCCCCCCCcccccccCCccccccHHHHHHHHHcc--CCCccccccccee
Q 001208 72 CRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS--NARQCEVCKHAFS 123 (1123)
Q Consensus 72 CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s--~~~~CelC~~~f~ 123 (1123)
|.+|.++.+..+.-+.||.|. +|-|+.=|.... ....||-||.+|+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 567776655555567999996 456776677654 3689999999984
No 41
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=80.72 E-value=1 Score=43.59 Aligned_cols=30 Identities=20% Similarity=0.559 Sum_probs=25.8
Q ss_pred cccccHHHHHHHHHccCCCcccccccceeecc
Q 001208 95 IKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1123)
Q Consensus 95 i~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1123)
.+-+|-.|+.+|++.+ ..||||+.+..+.+
T Consensus 82 NHaFH~hCisrWlktr--~vCPLdn~eW~~qr 111 (114)
T KOG2930|consen 82 NHAFHFHCISRWLKTR--NVCPLDNKEWVFQR 111 (114)
T ss_pred chHHHHHHHHHHHhhc--CcCCCcCcceeEee
Confidence 3679999999999976 59999999988753
No 42
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.55 E-value=1 Score=52.75 Aligned_cols=54 Identities=20% Similarity=0.533 Sum_probs=39.9
Q ss_pred cCCCcceEecCCCC-CCC-CcccccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 67 EEEEVCRICRNPGD-PEN-PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~-~~~-~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
+.+.+|-||+++.+ +.+ .++.| .|. +.+-++|+++|+-.+.+..|++|+.+-..
T Consensus 2 d~g~tcpiclds~~~~g~hr~vsl-~cg---hlFgs~cie~wl~k~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 2 DCGTTCPICLDSYTTAGNHRIVSL-QCG---HLFGSQCIEKWLGKKTKMQCPLCSGKATK 57 (463)
T ss_pred CccccCceeeeeeeecCceEEeee-ccc---ccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence 45689999998865 332 44444 343 57999999999976667899999987654
No 43
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=77.19 E-value=1.8 Score=49.54 Aligned_cols=52 Identities=27% Similarity=0.664 Sum_probs=37.6
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHcc--CCCcccccccceee
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS--NARQCEVCKHAFSF 124 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s--~~~~CelC~~~f~~ 124 (1123)
++++.|-.|.++-+-.+.-+.||.|.- |-|=--|-..+ =+.+|+-|+..|.=
T Consensus 12 deed~cplcie~mditdknf~pc~cgy------~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGY------QICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccccCcccccccccccCCcccCCccc------HHHHHHHHHHHhhccCCChHhhhhccc
Confidence 445679999988776667789999963 34444465443 35799999998864
No 44
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=76.81 E-value=1.7 Score=57.21 Aligned_cols=56 Identities=18% Similarity=0.459 Sum_probs=43.5
Q ss_pred cccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHcc--------CCCcccccccceee
Q 001208 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS--------NARQCEVCKHAFSF 124 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s--------~~~~CelC~~~f~~ 124 (1123)
..+..++|.||+.+.-. -.||.--|+.+.+|-.|..+=+..+ +...||+|+.+..-
T Consensus 3482 kQD~DDmCmICFTE~L~----AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALS----AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred hcccCceEEEEehhhhC----CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 45567999999976422 3689888999999999987766544 56899999988753
No 45
>PLN02189 cellulose synthase
Probab=76.75 E-value=1.6 Score=56.92 Aligned_cols=54 Identities=22% Similarity=0.553 Sum_probs=37.7
Q ss_pred cCCCcceEecCCC--CCCCCcccccc-cCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 67 EEEEVCRICRNPG--DPENPLRYPCA-CSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 67 ~~~~~CRIC~~~~--~~~~~L~~PC~-C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
-.+..|+||-++- +.++.++-.|+ |.= -|=+.|. +.-...+++.|+.||++|+-
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~f---pvCr~Cy-eyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGF---PVCRPCY-EYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCC---ccccchh-hhhhhcCCccCcccCCchhh
Confidence 3456999998763 24455666676 542 3667897 44455578999999999984
No 46
>PLN02436 cellulose synthase A
Probab=72.31 E-value=2.3 Score=55.60 Aligned_cols=53 Identities=19% Similarity=0.506 Sum_probs=37.1
Q ss_pred CCCcceEecCCC--CCCCCcccccc-cCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 68 EEEVCRICRNPG--DPENPLRYPCA-CSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 68 ~~~~CRIC~~~~--~~~~~L~~PC~-C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
...+|.||-++- +.+++++-.|+ |.= -|=+.|. +.-...+++.|+.||++|+-
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~f---pvCr~Cy-eyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAF---PVCRPCY-EYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCC---ccccchh-hhhhhcCCccCcccCCchhh
Confidence 446999998753 34556666665 432 3667897 44455578999999999983
No 47
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=69.11 E-value=2.4 Score=52.60 Aligned_cols=56 Identities=30% Similarity=0.599 Sum_probs=40.6
Q ss_pred CcceEecCCC-CCCCCcccccccCCccccccHHHH-------HHHHHcc-------CCCcccccccceeecc
Q 001208 70 EVCRICRNPG-DPENPLRYPCACSGSIKFVHQDCL-------LQWLNHS-------NARQCEVCKHAFSFSP 126 (1123)
Q Consensus 70 ~~CRIC~~~~-~~~~~L~~PC~C~Gsi~~vH~~CL-------~~Wl~~s-------~~~~CelC~~~f~~~~ 126 (1123)
.-|-+|-+|- =.|+||++ |.=.+|---|||.|- =.|+-.+ -..+||+|-+++--.+
T Consensus 6 GGCCVCSDErGWaeNPLVY-CDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALK 76 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVY-CDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALK 76 (900)
T ss_pred cceeeecCcCCCccCceee-ecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCccccee
Confidence 3588998653 37899987 666667677999995 4688543 2479999999875433
No 48
>PLN02195 cellulose synthase A
Probab=69.07 E-value=3.7 Score=53.51 Aligned_cols=55 Identities=16% Similarity=0.413 Sum_probs=34.3
Q ss_pred ccCCCcceEecCCC--CCCCCcccccccCCccccccHHHHHHHHHccCCCccccccccee
Q 001208 66 EEEEEVCRICRNPG--DPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~--~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1123)
+.....|+||-++- +.++.+.-- |.-|---|-+.|. +.=...+++.|+.||++|+
T Consensus 3 ~~~~~~c~~cgd~~~~~~~g~~fva--C~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 3 ESGAPICATCGEEVGVDSNGEAFVA--CHECSYPLCKACL-EYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cCCCccceecccccCcCCCCCeEEE--eccCCCccccchh-hhhhhcCCccCCccCCccc
Confidence 34567999997643 233333322 3333233666887 3334447899999999998
No 49
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=68.91 E-value=5.1 Score=45.56 Aligned_cols=49 Identities=16% Similarity=0.250 Sum_probs=32.3
Q ss_pred eEecCCCCCCCCcccccccCCcc-ccccHHHHHHHHHccCCCcccccccce
Q 001208 73 RICRNPGDPENPLRYPCACSGSI-KFVHQDCLLQWLNHSNARQCEVCKHAF 122 (1123)
Q Consensus 73 RIC~~~~~~~~~L~~PC~C~Gsi-~~vH~~CL~~Wl~~s~~~~CelC~~~f 122 (1123)
++|.+.....+.++. |.|.+|- .|+|-.|.=-=..-+++++|+-|+..=
T Consensus 220 ~yC~Cnqvsyg~Mi~-CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 220 TYCICNQVSYGKMIG-CDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred EEEEecccccccccc-cCCCCCCcceEEEeccccccCCCCcccchhhhhhh
Confidence 333333333345554 9999998 999999953222335789999998653
No 50
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=68.90 E-value=1.9 Score=43.80 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=27.5
Q ss_pred CCCcceEecCCCCC-CCCcccccccCCcc-ccccHHHHHHHHH
Q 001208 68 EEEVCRICRNPGDP-ENPLRYPCACSGSI-KFVHQDCLLQWLN 108 (1123)
Q Consensus 68 ~~~~CRIC~~~~~~-~~~L~~PC~C~Gsi-~~vH~~CL~~Wl~ 108 (1123)
-.-.|+||++.-.. ++-..-+|..+-.+ |.+|.+|+.+|-+
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 35789999987654 34444554433322 6799999999953
No 51
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.69 E-value=4.6 Score=42.63 Aligned_cols=60 Identities=25% Similarity=0.443 Sum_probs=37.9
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc---cC------CCcccccccceeec
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH---SN------ARQCEVCKHAFSFS 125 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~---s~------~~~CelC~~~f~~~ 125 (1123)
+++...|-||..---++..--.-|.=..+-|-+||-||..|++. ++ ...|+-|..+..++
T Consensus 162 dd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 162 DDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred chhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 35557788887421111111234655555677999999999963 32 25899998876653
No 52
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=68.46 E-value=2 Score=50.14 Aligned_cols=53 Identities=21% Similarity=0.636 Sum_probs=39.8
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
...-..|.||-+.+ .+--+-||. |..-..||-.|..++....|+.|+.+.+=+
T Consensus 366 gsTFeLCKICaend--KdvkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 366 GSTFELCKICAEND--KDVKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred cchHHHHHHhhccC--CCccccccc-----chHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 34458899996543 234468886 455668999999888889999999987654
No 53
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=68.39 E-value=6.6 Score=41.04 Aligned_cols=40 Identities=28% Similarity=0.557 Sum_probs=28.4
Q ss_pred CCCcceEecCCCC--------CCCCcccccccCCccccccHHHHHHHHHc
Q 001208 68 EEEVCRICRNPGD--------PENPLRYPCACSGSIKFVHQDCLLQWLNH 109 (1123)
Q Consensus 68 ~~~~CRIC~~~~~--------~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~ 109 (1123)
|+..|-||++--. +-+.--.|-.|..| |-|..||+|.-+.
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts--~rhSNCLdqfkka 48 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTS--YRHSNCLDQFKKA 48 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCc--cchhHHHHHHHHH
Confidence 3468999987532 12233466778887 8999999999864
No 54
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.41 E-value=5.5 Score=45.90 Aligned_cols=51 Identities=14% Similarity=0.450 Sum_probs=35.6
Q ss_pred CCcceEecCCC--CCCCC-cccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 69 EEVCRICRNPG--DPENP-LRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 69 ~~~CRIC~~~~--~~~~~-L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
+..|-+|..+. +++-. ++++|. |.+=++|+.+.+.. +...||.|+..++..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~~-~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhcC-CCCCCCCCCCccchh
Confidence 36899999753 23322 456664 55778999997654 556999999888754
No 55
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=65.13 E-value=8.7 Score=49.06 Aligned_cols=54 Identities=20% Similarity=0.588 Sum_probs=43.1
Q ss_pred CCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHcc-----CCCcccccccceee
Q 001208 68 EEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS-----NARQCEVCKHAFSF 124 (1123)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s-----~~~~CelC~~~f~~ 124 (1123)
+.-.|.||.+.-....+.- .|+.+-+.+|-.|+.+|=+.+ +.++|+-|+..++-
T Consensus 190 ~~yeCmIC~e~I~~t~~~W---SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~ 248 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVW---SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKT 248 (950)
T ss_pred CceEEEEeeeeccccCCce---ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhcc
Confidence 4468999998776655553 477888999999999999764 36899999988773
No 56
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=64.53 E-value=4.7 Score=53.01 Aligned_cols=55 Identities=18% Similarity=0.423 Sum_probs=33.7
Q ss_pred cCCCcceEecCCC--CCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 67 EEEEVCRICRNPG--DPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 67 ~~~~~CRIC~~~~--~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
-.+.+|+||-++- +.++.++--| .-|--=|=+.|. +.=...+++.|+.||++|+-
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC--~eC~FPVCrpCY-EYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVAC--DVCAFPVCRPCY-EYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEe--ccCCCccccchh-hhhhhcCCccCCccCCchhh
Confidence 3457999998753 2334443222 222222556886 33334478999999999984
No 57
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=58.65 E-value=9.6 Score=44.95 Aligned_cols=37 Identities=19% Similarity=0.615 Sum_probs=28.0
Q ss_pred ccccccCCccccccHHHHHHHHHcc-----------CCCcccccccceeec
Q 001208 86 RYPCACSGSIKFVHQDCLLQWLNHS-----------NARQCEVCKHAFSFS 125 (1123)
Q Consensus 86 ~~PC~C~Gsi~~vH~~CL~~Wl~~s-----------~~~~CelC~~~f~~~ 125 (1123)
-.+|.|+- .-=-+|+-||+..+ ++-.||.|+.+|=+.
T Consensus 306 C~~C~CRP---mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 306 CQQCYCRP---MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred Cccccccc---hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 34677765 34568999999753 578999999999764
No 58
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.55 E-value=6.8 Score=48.75 Aligned_cols=51 Identities=27% Similarity=0.625 Sum_probs=37.1
Q ss_pred cccccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001208 63 EEEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1123)
Q Consensus 63 ~~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1123)
++..+..+.|++|..+- + .=+.||. |..|+.+|+..+ ..||+|+.......
T Consensus 473 ~~l~~~~~~~~~~~~~~--~-~~~~~~~--------~~~~l~~~~~~~--~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 473 SQLREPNDVCAICYQEM--S-ARITPCS--------HALCLRKWLYVQ--EVCPLCHTYMKEDD 523 (543)
T ss_pred hhhhcccCcchHHHHHH--H-hcccccc--------chhHHHhhhhhc--cccCCCchhhhccc
Confidence 34566789999998764 1 1134444 999999999865 58999998876643
No 59
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=57.39 E-value=3.5 Score=37.46 Aligned_cols=49 Identities=20% Similarity=0.378 Sum_probs=33.4
Q ss_pred CCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 69 EEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 69 ~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
+-.|-||.+-- .+|.+.||. +.+-++|+++|+.. +...|++|+......
T Consensus 4 ~f~CpIt~~lM--~dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELM--RDPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB---SSEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHh--hCceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCCcc
Confidence 35688886543 457777754 56899999999998 567999999887754
No 60
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=56.85 E-value=9.2 Score=44.17 Aligned_cols=48 Identities=23% Similarity=0.456 Sum_probs=36.9
Q ss_pred CCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 68 EEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
+--.|-||++=. .-|++.||. |-+-.-|+.+.++. +..||.|..+|+=
T Consensus 22 ~lLRC~IC~eyf--~ip~itpCs-----HtfCSlCIR~~L~~--~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 22 DLLRCGICFEYF--NIPMITPCS-----HTFCSLCIRKFLSY--KPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHhHHHHHh--cCceecccc-----chHHHHHHHHHhcc--CCCCCceecccch
Confidence 346899998743 348999975 34677899999985 4799999998863
No 61
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=56.28 E-value=5.9 Score=32.34 Aligned_cols=40 Identities=25% Similarity=0.690 Sum_probs=27.2
Q ss_pred ceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCC--Cccccc
Q 001208 72 CRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNA--RQCEVC 118 (1123)
Q Consensus 72 CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~--~~CelC 118 (1123)
|-||++-. .+|...+|. |-+=++||.+|.+.++. ..|++|
T Consensus 1 CpiC~~~~--~~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLF--KDPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB---SSEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhh--CCccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 67887654 468777775 55889999999987755 489988
No 62
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.04 E-value=5.5 Score=46.07 Aligned_cols=51 Identities=27% Similarity=0.595 Sum_probs=37.5
Q ss_pred ccccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCccccccccee
Q 001208 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1123)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1123)
-++.|++.|-||.... -+..+.||+-+.+ ..|+.|=+- |.+.|=.||+...
T Consensus 417 lp~sEd~lCpICyA~p--i~Avf~PC~H~SC-----~~CI~qHlm--N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 417 LPDSEDNLCPICYAGP--INAVFAPCSHRSC-----YGCITQHLM--NCKRCFFCKTTVI 467 (489)
T ss_pred CCCcccccCcceeccc--chhhccCCCCchH-----HHHHHHHHh--cCCeeeEecceee
Confidence 4556779999998642 3467899985433 468888776 4569999998876
No 63
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=55.69 E-value=6 Score=32.69 Aligned_cols=40 Identities=35% Similarity=0.796 Sum_probs=21.5
Q ss_pred ceEecCCCCCCC-CcccccccCCccccccHHHHHHHHHcc--CCCccc
Q 001208 72 CRICRNPGDPEN-PLRYPCACSGSIKFVHQDCLLQWLNHS--NARQCE 116 (1123)
Q Consensus 72 CRIC~~~~~~~~-~L~~PC~C~Gsi~~vH~~CL~~Wl~~s--~~~~Ce 116 (1123)
|-||++-.++++ |.+.||. |-+=++||+++.+.+ +.-+||
T Consensus 1 CpIc~e~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 778887333344 5778865 458899999999976 455664
No 64
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=54.65 E-value=5.5 Score=45.24 Aligned_cols=57 Identities=21% Similarity=0.481 Sum_probs=38.8
Q ss_pred ccccCCCcceEecCCCCCCC-CcccccccCCccccccHHHHHHHHHcc---------------------CCCcccccccc
Q 001208 64 EEEEEEEVCRICRNPGDPEN-PLRYPCACSGSIKFVHQDCLLQWLNHS---------------------NARQCEVCKHA 121 (1123)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~-~L~~PC~C~Gsi~~vH~~CL~~Wl~~s---------------------~~~~CelC~~~ 121 (1123)
+..-...+|-||+=+.-++. -.+++|. +|.|-.||.+.|.+- -+..|++|+.+
T Consensus 110 ~nn~p~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~ 184 (368)
T KOG4445|consen 110 ENNHPNGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRER 184 (368)
T ss_pred cCCCCCCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhh
Confidence 33445678999975443332 2367765 799999998877642 13579999988
Q ss_pred eeec
Q 001208 122 FSFS 125 (1123)
Q Consensus 122 f~~~ 125 (1123)
....
T Consensus 185 i~~e 188 (368)
T KOG4445|consen 185 IKIE 188 (368)
T ss_pred cccc
Confidence 7654
No 65
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=53.89 E-value=5.9 Score=44.75 Aligned_cols=49 Identities=24% Similarity=0.420 Sum_probs=36.6
Q ss_pred CCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 68 EEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
.-..||||.+-. .-|+..||. |-+-.-|+.+-+.. ...||+|+.++...
T Consensus 24 s~lrC~IC~~~i--~ip~~TtCg-----HtFCslCIR~hL~~--qp~CP~Cr~~~~es 72 (391)
T COG5432 24 SMLRCRICDCRI--SIPCETTCG-----HTFCSLCIRRHLGT--QPFCPVCREDPCES 72 (391)
T ss_pred hHHHhhhhhhee--ecceecccc-----cchhHHHHHHHhcC--CCCCccccccHHhh
Confidence 447899998743 246677765 44777899988875 46899999998764
No 66
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.31 E-value=12 Score=40.01 Aligned_cols=50 Identities=22% Similarity=0.589 Sum_probs=35.4
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCccccccccee
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1123)
++---|-||++..+...|.-.-|. |.+-..|++.=++ +...||+|+.+..
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCG-----HvFC~~Cik~alk--~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCG-----HVFCSQCIKDALK--NTNKCPTCRKKIT 178 (187)
T ss_pred ccccCCCceecchhhccccccccc-----hhHHHHHHHHHHH--hCCCCCCcccccc
Confidence 344789999987665444334443 6788899998887 4579999997543
No 67
>PLN02400 cellulose synthase
Probab=53.07 E-value=7.9 Score=51.10 Aligned_cols=55 Identities=16% Similarity=0.428 Sum_probs=32.5
Q ss_pred CCCcceEecCCC--CCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 68 EEEVCRICRNPG--DPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 68 ~~~~CRIC~~~~--~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
.+.+|+||-++- +.+++++--| .-|---|=+.|.+ .=...+++.|+.||++|+-.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC--~eCaFPVCRpCYE-YERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVAC--NECAFPVCRPCYE-YERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEE--ccCCCccccchhh-eecccCCccCcccCCccccc
Confidence 456999998753 2333443222 2222225557852 22233678999999999843
No 68
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=50.33 E-value=11 Score=38.32 Aligned_cols=55 Identities=27% Similarity=0.555 Sum_probs=40.1
Q ss_pred CCCcceEecCCCCCCCCcccccccCCccccccHHH-HHHHHHccCCCcccccccceeec
Q 001208 68 EEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDC-LLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~C-L~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
.-=+|-||++.. .|+....|=.|=|. -+-..| ..-|-..+-...||+||+.|+-+
T Consensus 79 ~lYeCnIC~etS-~ee~FLKPneCCgY--~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETS-AEERFLKPNECCGY--SICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCccccc-chhhcCCcccccch--HHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 446799998754 35577889888883 344455 55676666678999999999864
No 69
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.14 E-value=15 Score=44.80 Aligned_cols=66 Identities=24% Similarity=0.567 Sum_probs=44.0
Q ss_pred CCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHcc---CCCcccccccceee---cccccCCCCCCchHHHH
Q 001208 69 EEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS---NARQCEVCKHAFSF---SPVYAENAPARLPFQEF 141 (1123)
Q Consensus 69 ~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s---~~~~CelC~~~f~~---~~iy~~~~p~~lp~~~~ 141 (1123)
...|-||+++.. -|..+- |-|.+==.||.|.++.+ +...|++|+..+.. .|++-+++-..-+++..
T Consensus 186 ~~~CPICL~~~~--~p~~t~-----CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~ 257 (513)
T KOG2164|consen 186 DMQCPICLEPPS--VPVRTN-----CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLH 257 (513)
T ss_pred CCcCCcccCCCC--cccccc-----cCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHH
Confidence 678999997532 233333 33677789999988776 45799999999776 45666665333334443
No 70
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=46.45 E-value=15 Score=48.36 Aligned_cols=54 Identities=15% Similarity=0.402 Sum_probs=33.2
Q ss_pred CCCcceEecCCC--CCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 68 EEEVCRICRNPG--DPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 68 ~~~~CRIC~~~~--~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
+..+|.||-++- +.++++.-- |.-|---|-+.|. +.=...+++.|+.||++|+-
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVA--C~eC~fpvCr~cy-eye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVA--CHVCGFPVCKPCY-EYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEE--eccCCCccccchh-hhhhhcCCccCCccCCchhh
Confidence 568999997653 233334322 2222223556887 33334477899999999984
No 71
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=45.27 E-value=21 Score=33.26 Aligned_cols=56 Identities=16% Similarity=0.345 Sum_probs=21.8
Q ss_pred cCCCcceEecCCC--CCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 67 EEEEVCRICRNPG--DPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 67 ~~~~~CRIC~~~~--~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
-.+.+|.||-++- +.++.++--|+ .+---+-+.|.+-=.+. +++.|+.||++|+..
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~--eC~fPvCr~CyEYErke-g~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACH--ECAFPVCRPCYEYERKE-GNQVCPQCKTRYKRH 64 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-S--SS-----HHHHHHHHHT-S-SB-TTT--B----
T ss_pred cCCcccccccCccccCCCCCEEEEEc--ccCCccchhHHHHHhhc-CcccccccCCCcccc
Confidence 4568999997643 23334444332 33234778897654444 678999999999854
No 72
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=44.09 E-value=12 Score=30.81 Aligned_cols=22 Identities=27% Similarity=0.860 Sum_probs=16.2
Q ss_pred cccHHHHHHHHHccCCCccccc
Q 001208 97 FVHQDCLLQWLNHSNARQCEVC 118 (1123)
Q Consensus 97 ~vH~~CL~~Wl~~s~~~~CelC 118 (1123)
-+|..|+.+++++.++..||.|
T Consensus 22 r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 22 RLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp EE-HHHHHHHTTT-SS-B-TTT
T ss_pred hHHHHHHHHHHhcCCCCCCcCC
Confidence 4999999999999887799987
No 73
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.66 E-value=19 Score=40.66 Aligned_cols=50 Identities=22% Similarity=0.475 Sum_probs=36.5
Q ss_pred CCcceEecCCCCCCCCcccccccCCccccccHHHHHH-HHHccCCCcccccccceeecc
Q 001208 69 EEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQ-WLNHSNARQCEVCKHAFSFSP 126 (1123)
Q Consensus 69 ~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~-Wl~~s~~~~CelC~~~f~~~~ 126 (1123)
...|-||.+.. +.|...| +.|.+--.||.. |-..+ ...|++|+.+-..++
T Consensus 215 d~kC~lC~e~~--~~ps~t~-----CgHlFC~~Cl~~~~t~~k-~~~CplCRak~~pk~ 265 (271)
T COG5574 215 DYKCFLCLEEP--EVPSCTP-----CGHLFCLSCLLISWTKKK-YEFCPLCRAKVYPKK 265 (271)
T ss_pred ccceeeeeccc--CCccccc-----ccchhhHHHHHHHHHhhc-cccCchhhhhccchh
Confidence 46799998753 4566455 457888899999 87654 467999998776544
No 74
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=43.47 E-value=12 Score=45.52 Aligned_cols=55 Identities=24% Similarity=0.638 Sum_probs=41.9
Q ss_pred ccccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc---cCCCcccccccceeec
Q 001208 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH---SNARQCEVCKHAFSFS 125 (1123)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~---s~~~~CelC~~~f~~~ 125 (1123)
+++.++..|.+|+++. +++..+.|+ |-+-+.|+.+.+.. +++.+||.|.-..++.
T Consensus 531 ~enk~~~~C~lc~d~a--ed~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPA--EDYIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccccCceeecccCChh--hhhHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 3456778999998764 457778877 34778999998853 4679999999887763
No 75
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.55 E-value=19 Score=42.30 Aligned_cols=53 Identities=21% Similarity=0.578 Sum_probs=35.6
Q ss_pred cCCCcceEecCCCCCCC------CcccccccCCccccccHHHHHHHHHccC-----CCcccccccceee
Q 001208 67 EEEEVCRICRNPGDPEN------PLRYPCACSGSIKFVHQDCLLQWLNHSN-----ARQCEVCKHAFSF 124 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~------~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~-----~~~CelC~~~f~~ 124 (1123)
..++.|-||.+...... -...+|+ |.+=..|+.+|-+... .+.||.|+..=++
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 34689999987643211 1124455 3455689999996655 5899999977554
No 76
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=39.51 E-value=14 Score=46.23 Aligned_cols=58 Identities=29% Similarity=0.574 Sum_probs=41.4
Q ss_pred cCCCcceEecCCCCCCCC---cccccccCCccccccHHHHHHH--H-H-----ccCCCcccccccceee
Q 001208 67 EEEEVCRICRNPGDPENP---LRYPCACSGSIKFVHQDCLLQW--L-N-----HSNARQCEVCKHAFSF 124 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~---L~~PC~C~Gsi~~vH~~CL~~W--l-~-----~s~~~~CelC~~~f~~ 124 (1123)
-..+.|-||-+++-+.+. -..-|+=.||..-+|..|-++= | . ..+-+||--|+|.|+-
T Consensus 115 RfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsK 183 (900)
T KOG0956|consen 115 RFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSK 183 (900)
T ss_pred hhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHH
Confidence 345999999877543322 2467888888899999997642 1 1 1245899999999875
No 77
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.59 E-value=25 Score=40.35 Aligned_cols=47 Identities=26% Similarity=0.700 Sum_probs=28.3
Q ss_pred CCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc--cCCCcccccccceeec
Q 001208 69 EEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHAFSFS 125 (1123)
Q Consensus 69 ~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~f~~~ 125 (1123)
.+.|-||++... .|...+| .|.-|-.-=-.. .++..|.+|+.++.-+
T Consensus 7 ~~eC~IC~nt~n--~Pv~l~C--------~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGN--CPVNLYC--------FHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCC--cCccccc--------cchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 478999998532 3444454 465553321111 1456799999998643
No 79
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.52 E-value=15 Score=31.99 Aligned_cols=42 Identities=21% Similarity=0.559 Sum_probs=25.4
Q ss_pred CcceEecCCCCCCCCcc----cccccCCccccccHHHHHHHHHccCCCcccccccce
Q 001208 70 EVCRICRNPGDPENPLR----YPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAF 122 (1123)
Q Consensus 70 ~~CRIC~~~~~~~~~L~----~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f 122 (1123)
+.|.||.+..- +..+ |-|.| .+|-.+-.+. .+..||+|+.+.
T Consensus 8 dECTICye~pv--dsVlYtCGHMCmC--------y~Cg~rl~~~-~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPV--DSVLYTCGHMCMC--------YACGLRLKKA-LHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcc--hHHHHHcchHHhH--------HHHHHHHHHc-cCCcCcchhhHH
Confidence 78999987532 2233 34444 3664443332 567999998643
No 80
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.17 E-value=25 Score=40.06 Aligned_cols=36 Identities=28% Similarity=0.676 Sum_probs=27.0
Q ss_pred cccCCccccccHHHHHHHHHc-----------cCCCcccccccceeeccc
Q 001208 89 CACSGSIKFVHQDCLLQWLNH-----------SNARQCEVCKHAFSFSPV 127 (1123)
Q Consensus 89 C~C~Gsi~~vH~~CL~~Wl~~-----------s~~~~CelC~~~f~~~~i 127 (1123)
|.|+- .--.+||.||+.. .++-+||.|+.+|-+..+
T Consensus 323 c~crp---~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 323 CICRP---LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred ccccc---HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 44553 4568999999953 357899999999987543
No 81
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.89 E-value=24 Score=37.03 Aligned_cols=26 Identities=27% Similarity=0.796 Sum_probs=20.3
Q ss_pred cCCCcceEecCCCCCCCCc-ccccccC
Q 001208 67 EEEEVCRICRNPGDPENPL-RYPCACS 92 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L-~~PC~C~ 92 (1123)
++...|-||+++-++++.+ ..||-|-
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCI 201 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCI 201 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEE
Confidence 4567899999987776654 6899994
No 82
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=33.05 E-value=4.1e+02 Score=29.64 Aligned_cols=78 Identities=17% Similarity=0.296 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhHhHHHHHHHhhhhhhcccchHHHH-HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeee
Q 001208 534 VAFLLVIELGVFPLMCGWWLDVCTIRMFGKSMSERV-QFFSVSPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYF 612 (1123)
Q Consensus 534 V~~i~~iEl~vfPl~cG~~LDictlplf~~t~~~r~-~~~~~~p~~s~flhW~~Gt~ym~~fA~fv~~~R~IlRpGVL~F 612 (1123)
|+.++.+||++|=++| +|+ ......++ ......+....+.|-+.+|+.+. +-+|+--+|+|-+-+-.+
T Consensus 5 vf~iL~~Eial~~iL~--------Lpi-p~r~~~~~~~~~~~~~~~~~~~~~i~~~~~vi-lllfiDsvr~i~~~~~~~- 73 (216)
T KOG1962|consen 5 VFTILYAEIALFLILL--------LPI-PPRRRRKIFKDRLKSGLAPQVLKTIATTMIVI-LLLFIDSVRRIQKYVSEY- 73 (216)
T ss_pred HHHHHHHHHHHHHHHH--------cCC-CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhh-
Confidence 7889999999987776 677 33222222 22244555666777777776664 556777788887444443
Q ss_pred ecCCCCCCCch
Q 001208 613 LRDPADPNYNP 623 (1123)
Q Consensus 613 iRdp~DP~f~p 623 (1123)
..-..|+-+|
T Consensus 74 -~~~~n~~~~~ 83 (216)
T KOG1962|consen 74 -GSMANPTDQP 83 (216)
T ss_pred -hcccCCccch
Confidence 5555565566
No 83
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.64 E-value=20 Score=39.05 Aligned_cols=47 Identities=28% Similarity=0.579 Sum_probs=35.5
Q ss_pred cccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCccccccc
Q 001208 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKH 120 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~ 120 (1123)
..+++-.|.||++... .|.+.||. |.+=..|+.++.. ....||.|+.
T Consensus 9 ~~~~~~~C~iC~~~~~--~p~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFR--EPVLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred hccccccChhhHHHhh--cCcccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 3567789999998653 24556665 5577899999998 6689999993
No 84
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.42 E-value=19 Score=46.53 Aligned_cols=38 Identities=29% Similarity=0.726 Sum_probs=27.6
Q ss_pred ccCCCcceEecCCCCCCCCc-ccccccCCccccccHHHHHHHHHc
Q 001208 66 EEEEEVCRICRNPGDPENPL-RYPCACSGSIKFVHQDCLLQWLNH 109 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L-~~PC~C~Gsi~~vH~~CL~~Wl~~ 109 (1123)
-+..+.|.+|-..-- ..|. +.||. |.+|.+||.+=...
T Consensus 814 ~ep~d~C~~C~~~ll-~~pF~vf~Cg-----H~FH~~Cl~~~v~~ 852 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLL-IKPFYVFPCG-----HCFHRDCLIRHVLS 852 (911)
T ss_pred ecCccchHHhcchhh-cCcceeeecc-----chHHHHHHHHHHHc
Confidence 466789999965433 2354 68986 67999999887753
No 85
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=31.50 E-value=44 Score=37.89 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=40.6
Q ss_pred CcceEecCCCCCCCCcccccccCCccccccHHHHHHHH-Hcc------CCCccccccccee
Q 001208 70 EVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWL-NHS------NARQCEVCKHAFS 123 (1123)
Q Consensus 70 ~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl-~~s------~~~~CelC~~~f~ 123 (1123)
..|.+|-++.+..++.+.-|.=+++-...|-.||-.=+ ... -...|+.|+..+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 68999988775556677778888888889999998833 222 2579999998554
No 86
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=31.07 E-value=33 Score=39.88 Aligned_cols=52 Identities=15% Similarity=0.458 Sum_probs=38.1
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
-....+|++|.. .--+...+.-|-|+ +=+.||.+-+.. ..+|+.|+....-+
T Consensus 12 ~n~~itC~LC~G-YliDATTI~eCLHT-----FCkSCivk~l~~--~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 12 LNPHITCRLCGG-YLIDATTITECLHT-----FCKSCIVKYLEE--SKYCPTCDIVIHKT 63 (331)
T ss_pred cccceehhhccc-eeecchhHHHHHHH-----HHHHHHHHHHHH--hccCCccceeccCc
Confidence 456789999954 33344556778766 557999999988 57999999776644
No 87
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=30.31 E-value=30 Score=38.87 Aligned_cols=22 Identities=27% Similarity=0.676 Sum_probs=14.7
Q ss_pred cccHHHHHHHHH--ccCCCccccccc
Q 001208 97 FVHQDCLLQWLN--HSNARQCEVCKH 120 (1123)
Q Consensus 97 ~vH~~CL~~Wl~--~s~~~~CelC~~ 120 (1123)
|+|-+|.- |+ -+++++|+-||.
T Consensus 246 WFH~~CVG--Lk~pPKG~WYC~eCk~ 269 (271)
T COG5034 246 WFHLECVG--LKEPPKGKWYCPECKK 269 (271)
T ss_pred heeccccc--cCCCCCCcEeCHHhHh
Confidence 66766632 11 247899999985
No 88
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=30.15 E-value=17 Score=34.52 Aligned_cols=34 Identities=26% Similarity=0.699 Sum_probs=23.3
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHH
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQ 105 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~ 105 (1123)
+++..|.+|...-..+.=.+.||. +.+|..|..+
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCC-----eEEecccccC
Confidence 456789999876543323357764 5799999753
No 89
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.73 E-value=5.2e+02 Score=27.62 Aligned_cols=16 Identities=38% Similarity=0.393 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhHhHH
Q 001208 534 VAFLLVIELGVFPLMC 549 (1123)
Q Consensus 534 V~~i~~iEl~vfPl~c 549 (1123)
|+.++.+||+++=++|
T Consensus 8 vf~~L~~Ei~~~~lL~ 23 (192)
T PF05529_consen 8 VFGLLYAEIAVLLLLV 23 (192)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5788889999887665
No 90
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=25.48 E-value=25 Score=46.79 Aligned_cols=36 Identities=36% Similarity=0.589 Sum_probs=26.8
Q ss_pred ccCCCcceEecCCCCC-CCCcccccccCCccccccHHHHH
Q 001208 66 EEEEEVCRICRNPGDP-ENPLRYPCACSGSIKFVHQDCLL 104 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~-~~~L~~PC~C~Gsi~~vH~~CL~ 104 (1123)
.++...|-||.+.+.. .+.++ -|.||-..|||+|--
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~iv---fCD~Cnl~VHq~Cyg 252 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIV---FCDGCNLAVHQECYG 252 (1051)
T ss_pred cCCCccceeecccccCCCceEE---EcCCCcchhhhhccC
Confidence 3667999999875432 24443 388999999999986
No 91
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.69 E-value=41 Score=40.40 Aligned_cols=55 Identities=24% Similarity=0.469 Sum_probs=37.0
Q ss_pred CCccccccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCccccccccee
Q 001208 60 DIEEEEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1123)
Q Consensus 60 ~~~~~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1123)
.+..++...+-.|-||..-- -.|...||.=+-| +.||++ ..+.+..||+|+..+.
T Consensus 75 ~s~~~~~~sef~c~vc~~~l--~~pv~tpcghs~c-----~~Cl~r--~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 75 LSGPEEIRSEFECCVCSRAL--YPPVVTPCGHSFC-----LECLDR--SLDQETECPLCRDELV 129 (398)
T ss_pred hccCccccchhhhhhhHhhc--CCCcccccccccc-----HHHHHH--HhccCCCCcccccccc
Confidence 33334445667899996532 3577889875544 347777 3336689999999986
No 92
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=22.06 E-value=7.8e+02 Score=28.26 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCee--e-eecCCCCCCCchhhhhhcchHHHHHHHHHHHHHH
Q 001208 589 VYMLQISIFVSLLRGVLRNGVL--Y-FLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAV 645 (1123)
Q Consensus 589 ~ym~~fA~fv~~~R~IlRpGVL--~-FiRdp~DP~f~pi~d~l~~p~~~qlrri~~S~~v 645 (1123)
..+++...|+.-+.++.=-|+. | |-++..|..-+|+...+.+-+..|+.-++++.++
T Consensus 109 f~~~W~~~~i~~~~~~~vag~v~~WYF~~~~~~~~~~~~~~s~~~~~~~~~GSi~~gSli 168 (334)
T PF04515_consen 109 FSFFWTSQFILNVQQFTVAGVVAQWYFSRDKPNMPKSPVLRSLKRALTYHFGSICFGSLI 168 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhheecCCcccccchHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3456667777778888878874 5 4454436666788888888888888887654433
No 93
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=21.78 E-value=83 Score=36.71 Aligned_cols=52 Identities=21% Similarity=0.354 Sum_probs=40.0
Q ss_pred cccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
-+.+...|-+|+.. -.+||-|.-|-.-+-..|..+.++ +..+||+=+.+-..
T Consensus 296 l~~~~~~CpvClk~------r~Nptvl~vSGyVfCY~Ci~~Yv~--~~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 296 LPPDREVCPVCLKK------RQNPTVLEVSGYVFCYPCIFSYVV--NYGHCPVTGYPASV 347 (357)
T ss_pred CCCccccChhHHhc------cCCCceEEecceEEeHHHHHHHHH--hcCCCCccCCcchH
Confidence 34556899999753 357899988877789999999998 55799987766543
No 94
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=21.17 E-value=40 Score=29.55 Aligned_cols=43 Identities=19% Similarity=0.464 Sum_probs=27.2
Q ss_pred CCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccc
Q 001208 69 EEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEV 117 (1123)
Q Consensus 69 ~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~Cel 117 (1123)
...|-|... ++..|-+.+-+.|-+-++.+++|++.++...||+
T Consensus 11 ~~~CPiT~~------~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQ------PFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSS------B-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCC------hhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 356766654 3445555555567899999999997778889999
No 95
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=20.75 E-value=51 Score=28.06 Aligned_cols=35 Identities=23% Similarity=0.599 Sum_probs=15.6
Q ss_pred CcccccccCCccccccHHH--HHHHHHc---cCCCcccccccc
Q 001208 84 PLRYPCACSGSIKFVHQDC--LLQWLNH---SNARQCEVCKHA 121 (1123)
Q Consensus 84 ~L~~PC~C~Gsi~~vH~~C--L~~Wl~~---s~~~~CelC~~~ 121 (1123)
++..|++=+. -.|-+| |+.|+.. ++.+.|++|+++
T Consensus 11 ~i~~P~Rg~~---C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 11 RIRIPVRGKN---CKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-SSEEEETT-----SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred EEEeCccCCc---CcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 5566766443 477788 5677754 467899999863
No 96
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=20.64 E-value=69 Score=41.86 Aligned_cols=26 Identities=38% Similarity=0.728 Sum_probs=17.7
Q ss_pred CCccccccCCCcceEecCCCC--CCCCc
Q 001208 60 DIEEEEEEEEEVCRICRNPGD--PENPL 85 (1123)
Q Consensus 60 ~~~~~~~~~~~~CRIC~~~~~--~~~~L 85 (1123)
+.+|-+++++-.|.||+++.. +++.|
T Consensus 459 ~~~~l~ee~gl~C~ICrEGy~~~p~~~l 486 (802)
T PF13764_consen 459 NMEDLEEEDGLTCCICREGYKFRPDEVL 486 (802)
T ss_pred CcccccccCCCeEEEcCCccccCCccce
Confidence 334444588899999999874 44444
No 97
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=20.10 E-value=37 Score=40.20 Aligned_cols=49 Identities=31% Similarity=0.727 Sum_probs=37.3
Q ss_pred ccCCCcceEecCCCC-CCCCc-ccccccCCccccccHHHHHHHHHccCCCcccccc
Q 001208 66 EEEEEVCRICRNPGD-PENPL-RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCK 119 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~-~~~~L-~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~ 119 (1123)
++-+-.|-.|-+... .++.| --||. |.+|..|+.+.+...+.++||-|+
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHH
Confidence 345688999975432 22233 46876 789999999999888899999999
Done!