Query 001208
Match_columns 1123
No_of_seqs 320 out of 934
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 16:31:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.6 5.5E-17 1.9E-21 139.6 3.5 58 66-125 3-60 (60)
2 2d8s_A Cellular modulator of i 99.6 1.3E-15 4.5E-20 138.4 4.7 64 66-129 12-75 (80)
3 2ct0_A Non-SMC element 1 homol 97.9 8.4E-06 2.9E-10 72.9 4.5 53 67-125 13-65 (74)
4 2ep4_A Ring finger protein 24; 97.8 1.3E-05 4.6E-10 70.3 4.4 53 65-124 11-64 (74)
5 2kiz_A E3 ubiquitin-protein li 97.8 1.3E-05 4.6E-10 69.4 3.7 54 64-124 9-63 (69)
6 2ect_A Ring finger protein 126 97.8 1.3E-05 4.5E-10 71.1 3.5 57 64-127 10-67 (78)
7 2ecl_A Ring-box protein 2; RNF 97.7 1.3E-05 4.4E-10 72.4 2.4 53 68-126 14-78 (81)
8 2ct2_A Tripartite motif protei 97.6 4.3E-05 1.5E-09 69.0 4.4 57 65-126 11-70 (88)
9 2yur_A Retinoblastoma-binding 97.6 4.7E-05 1.6E-09 67.2 4.5 53 65-124 11-64 (74)
10 3dpl_R Ring-box protein 1; ubi 97.5 5.4E-05 1.8E-09 72.2 3.8 52 68-126 36-103 (106)
11 2l0b_A E3 ubiquitin-protein li 97.5 3.1E-05 1.1E-09 71.3 2.0 51 66-123 37-88 (91)
12 1x4j_A Ring finger protein 38; 97.5 2.8E-05 9.5E-10 68.6 1.5 51 66-123 20-71 (75)
13 2ysl_A Tripartite motif-contai 97.5 6.3E-05 2.1E-09 65.7 3.7 55 64-125 15-70 (73)
14 2ecm_A Ring finger and CHY zin 97.5 4.4E-05 1.5E-09 63.0 2.5 50 67-123 3-54 (55)
15 1iym_A EL5; ring-H2 finger, ub 97.4 4.4E-05 1.5E-09 63.1 2.1 51 67-123 3-54 (55)
16 2ecy_A TNF receptor-associated 97.4 7.6E-05 2.6E-09 64.2 3.4 55 65-127 11-65 (66)
17 2d8t_A Dactylidin, ring finger 97.4 4.6E-05 1.6E-09 66.6 2.0 53 66-127 12-64 (71)
18 2csy_A Zinc finger protein 183 97.4 9.8E-05 3.3E-09 66.1 4.1 51 64-123 10-60 (81)
19 2ea6_A Ring finger protein 4; 97.4 5.1E-05 1.7E-09 65.2 1.8 51 66-123 12-67 (69)
20 1v87_A Deltex protein 2; ring- 97.3 0.00011 3.9E-09 69.8 4.0 52 69-125 25-95 (114)
21 3k1l_B Fancl; UBC, ring, RWD, 97.3 9.3E-05 3.2E-09 83.1 3.3 61 64-124 303-373 (381)
22 2ecw_A Tripartite motif-contai 97.2 0.00041 1.4E-08 61.8 5.8 53 66-125 16-72 (85)
23 2ecn_A Ring finger protein 141 97.2 8.3E-05 2.8E-09 64.5 0.9 49 66-124 12-60 (70)
24 1e4u_A Transcriptional repress 97.1 0.00047 1.6E-08 62.0 5.4 59 67-129 9-67 (78)
25 2ysj_A Tripartite motif-contai 97.1 0.0005 1.7E-08 58.4 5.0 48 64-118 15-63 (63)
26 4a0k_B E3 ubiquitin-protein li 97.1 9.3E-05 3.2E-09 71.8 0.4 54 68-126 47-114 (117)
27 2djb_A Polycomb group ring fin 97.1 0.00037 1.3E-08 61.0 4.1 53 65-126 11-64 (72)
28 2ecv_A Tripartite motif-contai 97.1 0.00073 2.5E-08 60.1 6.1 53 66-125 16-72 (85)
29 3ztg_A E3 ubiquitin-protein li 97.1 0.00028 9.5E-09 64.5 3.3 53 64-123 8-61 (92)
30 2ecj_A Tripartite motif-contai 97.0 0.00059 2E-08 56.6 4.3 46 66-118 12-58 (58)
31 1chc_A Equine herpes virus-1 r 96.8 0.00046 1.6E-08 59.4 2.7 50 67-124 3-52 (68)
32 3ng2_A RNF4, snurf, ring finge 96.8 0.00027 9.1E-09 61.2 0.7 52 67-125 8-64 (71)
33 2egp_A Tripartite motif-contai 96.8 0.00041 1.4E-08 61.3 1.7 53 66-125 9-66 (79)
34 1t1h_A Gspef-atpub14, armadill 96.5 0.0019 6.5E-08 57.0 4.5 52 66-125 5-56 (78)
35 2xeu_A Ring finger protein 4; 96.5 0.00047 1.6E-08 58.2 0.6 51 68-125 2-57 (64)
36 2ckl_B Ubiquitin ligase protei 96.4 0.0015 5.1E-08 66.3 3.0 51 67-125 52-103 (165)
37 3lrq_A E3 ubiquitin-protein li 96.2 0.0014 4.7E-08 61.3 1.8 54 65-126 18-72 (100)
38 3fl2_A E3 ubiquitin-protein li 96.2 0.0014 4.9E-08 63.3 1.6 50 67-124 50-99 (124)
39 1jm7_A BRCA1, breast cancer ty 95.9 0.0053 1.8E-07 57.7 4.1 52 67-125 19-71 (112)
40 2y43_A E3 ubiquitin-protein li 95.8 0.0037 1.3E-07 57.8 2.8 49 67-124 20-69 (99)
41 4ayc_A E3 ubiquitin-protein li 95.7 0.0016 5.3E-08 64.4 -0.3 49 67-124 51-99 (138)
42 1z6u_A NP95-like ring finger p 95.7 0.0027 9.3E-08 63.8 1.5 52 67-126 76-127 (150)
43 1g25_A CDK-activating kinase a 95.7 0.0034 1.2E-07 53.6 1.9 52 68-125 2-56 (65)
44 2y1n_A E3 ubiquitin-protein li 95.6 0.0041 1.4E-07 71.5 2.6 52 68-127 331-382 (389)
45 1rmd_A RAG1; V(D)J recombinati 95.5 0.0046 1.6E-07 58.9 2.1 53 66-126 20-72 (116)
46 2ckl_A Polycomb group ring fin 95.1 0.0064 2.2E-07 57.2 1.7 51 66-125 12-63 (108)
47 3hct_A TNF receptor-associated 94.9 0.0085 2.9E-07 57.4 2.1 54 66-127 15-68 (118)
48 3l11_A E3 ubiquitin-protein li 94.9 0.0027 9.2E-08 60.4 -1.6 50 67-124 13-62 (115)
49 2ea5_A Cell growth regulator w 94.7 0.024 8.1E-07 49.4 4.0 54 64-129 10-64 (68)
50 4ic3_A E3 ubiquitin-protein li 94.6 0.0026 8.9E-08 56.2 -2.4 46 66-124 21-67 (74)
51 4ap4_A E3 ubiquitin ligase RNF 94.5 0.006 2.1E-07 58.6 -0.2 53 67-126 5-62 (133)
52 1bor_A Transcription factor PM 94.2 0.012 4E-07 49.1 0.9 48 66-125 3-50 (56)
53 2vje_B MDM4 protein; proto-onc 93.8 0.018 6.2E-07 49.3 1.3 50 65-123 3-55 (63)
54 3nw0_A Non-structural maintena 93.7 0.034 1.2E-06 60.1 3.6 52 68-125 179-230 (238)
55 4ap4_A E3 ubiquitin ligase RNF 93.4 0.011 3.6E-07 56.8 -0.8 52 67-125 70-126 (133)
56 1wgm_A Ubiquitin conjugation f 93.1 0.063 2.2E-06 50.1 3.9 51 67-125 20-70 (98)
57 1jm7_B BARD1, BRCA1-associated 93.0 0.035 1.2E-06 53.0 2.0 47 67-124 20-67 (117)
58 2c2l_A CHIP, carboxy terminus 92.7 0.054 1.8E-06 58.4 3.2 52 66-125 205-256 (281)
59 2ecg_A Baculoviral IAP repeat- 92.4 0.028 9.4E-07 49.6 0.5 45 67-124 23-68 (75)
60 2kre_A Ubiquitin conjugation f 92.3 0.097 3.3E-06 49.0 4.1 51 66-125 26-76 (100)
61 2kr4_A Ubiquitin conjugation f 92.2 0.095 3.2E-06 47.5 3.8 51 66-125 11-61 (85)
62 3knv_A TNF receptor-associated 91.9 0.037 1.3E-06 55.0 0.7 52 65-124 27-78 (141)
63 2vje_A E3 ubiquitin-protein li 91.3 0.081 2.8E-06 45.3 2.1 48 67-123 6-56 (64)
64 3hcs_A TNF receptor-associated 89.0 0.12 4.3E-06 52.2 1.6 53 66-126 15-67 (170)
65 2f42_A STIP1 homology and U-bo 88.9 0.16 5.4E-06 52.6 2.3 52 66-125 103-154 (179)
66 3htk_C E3 SUMO-protein ligase 88.0 0.27 9.1E-06 53.8 3.4 54 67-126 179-234 (267)
67 2lri_C Autoimmune regulator; Z 87.8 0.19 6.6E-06 43.7 1.8 49 66-121 9-59 (66)
68 1wev_A Riken cDNA 1110020M19; 87.7 0.062 2.1E-06 49.3 -1.5 58 65-125 12-76 (88)
69 2l43_A N-teminal domain from h 86.4 0.16 5.4E-06 46.7 0.5 54 66-122 22-76 (88)
70 3t6p_A Baculoviral IAP repeat- 84.7 0.12 4.1E-06 58.7 -1.5 45 67-124 293-338 (345)
71 2ku3_A Bromodomain-containing 84.1 0.18 6.2E-06 44.5 -0.3 53 66-121 13-66 (71)
72 1wen_A Inhibitor of growth fam 83.5 0.45 1.5E-05 42.0 2.0 50 64-121 11-65 (71)
73 2yu4_A E3 SUMO-protein ligase 82.5 0.7 2.4E-05 42.4 3.0 51 67-124 5-63 (94)
74 1wim_A KIAA0161 protein; ring 81.9 0.48 1.6E-05 43.3 1.6 53 68-125 4-65 (94)
75 1weu_A Inhibitor of growth fam 81.8 0.61 2.1E-05 43.2 2.3 50 65-122 32-86 (91)
76 2k16_A Transcription initiatio 81.5 0.2 6.9E-06 44.2 -1.0 55 65-123 14-70 (75)
77 2yho_A E3 ubiquitin-protein li 79.2 0.16 5.6E-06 45.3 -2.4 52 66-129 15-67 (79)
78 3u5n_A E3 ubiquitin-protein li 74.2 0.32 1.1E-05 51.2 -2.3 52 65-123 3-56 (207)
79 2bay_A PRE-mRNA splicing facto 72.1 1.4 4.8E-05 37.4 1.6 49 70-126 4-52 (61)
80 2l5u_A Chromodomain-helicase-D 67.6 1.4 4.9E-05 37.4 0.7 50 65-121 7-58 (61)
81 2e6r_A Jumonji/ARID domain-con 65.8 0.57 1.9E-05 43.3 -2.3 52 66-121 13-66 (92)
82 1wep_A PHF8; structural genomi 64.1 2.8 9.6E-05 37.3 2.0 55 65-123 8-65 (79)
83 1weo_A Cellulose synthase, cat 63.1 14 0.00046 34.1 6.1 55 67-124 14-70 (93)
84 3ql9_A Transcriptional regulat 61.1 5.1 0.00017 39.3 3.3 48 65-119 53-109 (129)
85 2lbm_A Transcriptional regulat 60.7 4.3 0.00015 40.5 2.7 47 66-119 60-115 (142)
86 2ri7_A Nucleosome-remodeling f 59.5 1.4 5E-05 44.7 -0.9 52 67-122 6-60 (174)
87 1mm2_A MI2-beta; PHD, zinc fin 59.2 1.3 4.6E-05 37.6 -1.0 49 66-121 6-56 (61)
88 3o36_A Transcription intermedi 56.0 1.5 5.3E-05 45.0 -1.4 48 68-122 3-52 (184)
89 3kv5_D JMJC domain-containing 55.9 1.5 5.2E-05 52.0 -1.7 52 67-122 35-89 (488)
90 2vnf_A ING 4, P29ING4, inhibit 53.8 1.2 4.2E-05 37.8 -2.2 47 66-120 7-58 (60)
91 2vpb_A Hpygo1, pygopus homolog 52.7 4.9 0.00017 34.7 1.4 51 66-119 5-64 (65)
92 1wee_A PHD finger family prote 51.9 4.3 0.00015 35.5 1.0 58 60-121 7-66 (72)
93 1we9_A PHD finger family prote 51.5 2.3 7.8E-05 36.2 -0.9 54 66-122 3-59 (64)
94 1f62_A Transcription factor WS 49.9 4.3 0.00015 32.9 0.6 46 71-120 2-49 (51)
95 2ysm_A Myeloid/lymphoid or mix 49.5 2.8 9.5E-05 39.6 -0.7 39 66-108 4-42 (111)
96 2yt5_A Metal-response element- 47.0 1.8 6.2E-05 37.0 -2.2 54 66-122 3-62 (66)
97 4gne_A Histone-lysine N-methyl 46.5 4.4 0.00015 38.5 0.2 46 66-118 12-59 (107)
98 2yql_A PHD finger protein 21A; 45.5 2 6.9E-05 35.8 -2.1 48 66-120 6-55 (56)
99 1xwh_A Autoimmune regulator; P 44.4 2.2 7.4E-05 36.8 -2.1 48 67-121 6-55 (66)
100 1fp0_A KAP-1 corepressor; PHD 44.3 4.8 0.00016 37.0 0.0 52 65-123 21-74 (88)
101 2jmi_A Protein YNG1, ING1 homo 42.3 2.5 8.6E-05 39.0 -2.2 49 65-120 22-75 (90)
102 2puy_A PHD finger protein 21A; 41.6 2.3 7.8E-05 35.9 -2.4 49 67-122 3-53 (60)
103 3v43_A Histone acetyltransfera 41.4 10 0.00035 35.9 1.8 35 67-104 3-42 (112)
104 3ask_A E3 ubiquitin-protein li 41.0 6 0.0002 42.3 0.2 49 69-121 174-225 (226)
105 2kwj_A Zinc finger protein DPF 40.5 6.4 0.00022 37.5 0.3 34 70-106 2-41 (114)
106 3c6w_A P28ING5, inhibitor of g 38.8 3 0.0001 35.4 -2.1 46 67-120 7-57 (59)
107 2lv9_A Histone-lysine N-methyl 38.6 6.2 0.00021 36.7 -0.1 48 68-120 27-75 (98)
108 1wem_A Death associated transc 38.4 21 0.00071 31.3 3.2 51 67-122 14-71 (76)
109 2ro1_A Transcription intermedi 38.3 5.4 0.00018 41.4 -0.7 48 69-123 2-51 (189)
110 3v43_A Histone acetyltransfera 37.7 5.7 0.0002 37.7 -0.6 49 70-121 62-112 (112)
111 3i2d_A E3 SUMO-protein ligase 31.8 39 0.0013 38.6 4.9 43 82-127 256-303 (371)
112 2g6q_A Inhibitor of growth pro 27.0 4.1 0.00014 34.9 -3.2 48 66-120 8-59 (62)
113 3o70_A PHD finger protein 13; 23.4 23 0.00077 30.8 0.8 52 64-120 14-66 (68)
114 2e6s_A E3 ubiquitin-protein li 22.7 12 0.0004 33.4 -1.2 47 70-120 27-76 (77)
115 3kqi_A GRC5, PHD finger protei 22.6 11 0.00039 33.0 -1.3 52 68-123 9-63 (75)
116 3lqh_A Histone-lysine N-methyl 22.2 23 0.0008 36.6 0.8 51 69-122 2-64 (183)
117 1wew_A DNA-binding family prot 22.1 66 0.0022 28.4 3.6 53 66-121 13-72 (78)
118 1wil_A KIAA1045 protein; ring 22.1 75 0.0026 29.0 3.9 54 66-124 12-79 (89)
119 4fo9_A E3 SUMO-protein ligase 21.6 77 0.0026 36.1 4.8 42 82-126 222-268 (360)
120 3asl_A E3 ubiquitin-protein li 21.6 8.8 0.0003 33.5 -2.2 47 71-121 20-69 (70)
121 1x4i_A Inhibitor of growth pro 20.1 14 0.0005 32.2 -1.2 51 67-124 4-58 (70)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.64 E-value=5.5e-17 Score=139.59 Aligned_cols=58 Identities=31% Similarity=0.756 Sum_probs=52.1
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
+++++.||||++++ +++++.||+|+||+++||++||++|++++++.+||+|+++|+++
T Consensus 3 ~~~~~~CrIC~~~~--~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~r 60 (60)
T 1vyx_A 3 DEDVPVCWICNEEL--GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNTR 60 (60)
T ss_dssp TCSCCEETTTTEEC--SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCCC
T ss_pred CCCCCEeEEeecCC--CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeecC
Confidence 46778999999864 45789999999999999999999999999999999999999863
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-15 Score=138.36 Aligned_cols=64 Identities=45% Similarity=1.038 Sum_probs=56.9
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeeccccc
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYA 129 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~iy~ 129 (1123)
+++++.|+||+++.+++++++.||+|+|++|++|++||++|+..+++.+||+|+++|.+...+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~ 75 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLS 75 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccC
Confidence 3556889999988877788999999999999999999999999998899999999999876543
No 3
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.88 E-value=8.4e-06 Score=72.88 Aligned_cols=53 Identities=15% Similarity=0.475 Sum_probs=42.3
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
+..+.|-||++...++. +|..+.+.+|..|+.+|++.+++.+||+|++++.+.
T Consensus 13 ~~i~~C~IC~~~i~~g~------~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ------SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSE------ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCC------ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 55688999998765432 244556789999999999988778999999998864
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=1.3e-05 Score=70.34 Aligned_cols=53 Identities=28% Similarity=0.724 Sum_probs=39.0
Q ss_pred cccCCCcceEecCCCCCCCCc-ccccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 65 EEEEEEVCRICRNPGDPENPL-RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L-~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
+.+++..|.||++.......+ ..|| .|.+|.+|+.+|++.+ ..||+|++++.-
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C-----~H~f~~~Ci~~~~~~~--~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPC-----KHAFHRKCLIKWLEVR--KVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETT-----TEEEEHHHHHHHHHHC--SBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCC-----CCEecHHHHHHHHHcC--CcCCCcCccccc
Confidence 345568999999876543332 2365 3679999999999875 489999998753
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.76 E-value=1.3e-05 Score=69.39 Aligned_cols=54 Identities=33% Similarity=0.753 Sum_probs=40.5
Q ss_pred ccccCCCcceEecCCCCCC-CCcccccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 64 EEEEEEEVCRICRNPGDPE-NPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~-~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
++.++...|.||++....+ .+...||. |.+|..|+.+|++.+ ..||+|+.++..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITN--KKCPICRVDIEA 63 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCSBSCS
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcC--CCCcCcCccccC
Confidence 3445668899999876433 34456763 679999999999875 479999998864
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.75 E-value=1.3e-05 Score=71.14 Aligned_cols=57 Identities=21% Similarity=0.644 Sum_probs=42.2
Q ss_pred ccccCCCcceEecCCCCCCCC-cccccccCCccccccHHHHHHHHHccCCCcccccccceeeccc
Q 001208 64 EEEEEEEVCRICRNPGDPENP-LRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPV 127 (1123)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~-L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~i 127 (1123)
+..++...|.||++....... ...||. |.+|.+|+.+|++.+ ..||+|+.++....+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTGQNT 67 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCCSCS
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCCccc
Confidence 344567899999987654333 235654 679999999999754 699999999876543
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=1.3e-05 Score=72.38 Aligned_cols=53 Identities=23% Similarity=0.661 Sum_probs=37.6
Q ss_pred CCCcceEecCCCCC-----------CC-CcccccccCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001208 68 EEEVCRICRNPGDP-----------EN-PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1123)
Q Consensus 68 ~~~~CRIC~~~~~~-----------~~-~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1123)
+++.|.||+++.+. ++ ....| .|. |.+|.+|+.+|++.+ .+||+|++++.++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~-~C~---H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWG-ECN---HSFHNCCMSLWVKQN--NRCPLCQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEE-TTS---CEEEHHHHHHHTTTC--CBCTTTCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeC-CCC---CccChHHHHHHHHhC--CCCCCcCCCcchhh
Confidence 34668888876532 22 22333 333 679999999999875 59999999998754
No 8
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=4.3e-05 Score=69.00 Aligned_cols=57 Identities=25% Similarity=0.479 Sum_probs=43.5
Q ss_pred cccCCCcceEecCCCCCCC--CcccccccCCccccccHHHHHHHHHcc-CCCcccccccceeecc
Q 001208 65 EEEEEEVCRICRNPGDPEN--PLRYPCACSGSIKFVHQDCLLQWLNHS-NARQCEVCKHAFSFSP 126 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~--~L~~PC~C~Gsi~~vH~~CL~~Wl~~s-~~~~CelC~~~f~~~~ 126 (1123)
..++...|.||++....++ +...||. |.+|.+|+.+|++.+ +...||+|+..+....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred hccCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 3456688999998765433 5566663 679999999999875 4679999999987653
No 9
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.58 E-value=4.7e-05 Score=67.22 Aligned_cols=53 Identities=21% Similarity=0.480 Sum_probs=41.2
Q ss_pred cccCCCcceEecCCCCCCCCcccc-cccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 65 EEEEEEVCRICRNPGDPENPLRYP-CACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~P-C~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
+.+++..|.||++... +|...| |. |.+|+.|+.+|++.++...||+|+.++..
T Consensus 11 ~~~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 11 PIPDELLCLICKDIMT--DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CSCGGGSCSSSCCCCT--TCEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cCCCCCCCcCCChHHh--CCeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3455688999987543 466666 53 67999999999998777899999997654
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.49 E-value=5.4e-05 Score=72.15 Aligned_cols=52 Identities=23% Similarity=0.490 Sum_probs=37.8
Q ss_pred CCCcceEecCCCCCCC---------------Cc-ccccccCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001208 68 EEEVCRICRNPGDPEN---------------PL-RYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1123)
Q Consensus 68 ~~~~CRIC~~~~~~~~---------------~L-~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1123)
+.+.|-||++..+... ++ ..|| .|.+|..|+.+|+.. +.+||+|+.+|.++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C-----~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~~~ 103 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC-----NHAFHFHCISRWLKT--RQVCPLDNREWEFQK 103 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETT-----SCEEEHHHHHHHHTT--CSBCSSSCSBCCEEE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeeccc-----CcEECHHHHHHHHHc--CCcCcCCCCcceeec
Confidence 4578999997654221 11 2343 378999999999986 468999999998753
No 11
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.48 E-value=3.1e-05 Score=71.28 Aligned_cols=51 Identities=29% Similarity=0.739 Sum_probs=38.6
Q ss_pred ccCCCcceEecCCCCCCC-CcccccccCCccccccHHHHHHHHHccCCCccccccccee
Q 001208 66 EEEEEVCRICRNPGDPEN-PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~-~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1123)
.+++..|.||+++...++ +...||. |.+|..|+.+|++.+ ..||+|++++.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCC
Confidence 355688999997665433 3346754 679999999999754 59999998874
No 12
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.47 E-value=2.8e-05 Score=68.65 Aligned_cols=51 Identities=24% Similarity=0.671 Sum_probs=38.6
Q ss_pred ccCCCcceEecCCCCCCCC-cccccccCCccccccHHHHHHHHHccCCCccccccccee
Q 001208 66 EEEEEVCRICRNPGDPENP-LRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~-L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1123)
.++...|.||++..+..+. ...||. |.+|.+|+.+|++.+ ..||+|++++.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCC
Confidence 4556889999987554333 346654 679999999999864 58999998875
No 13
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=6.3e-05 Score=65.67 Aligned_cols=55 Identities=22% Similarity=0.471 Sum_probs=41.7
Q ss_pred ccccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc-cCCCcccccccceeec
Q 001208 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH-SNARQCEVCKHAFSFS 125 (1123)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~-s~~~~CelC~~~f~~~ 125 (1123)
++.++...|.||++... +|...||. |.+|.+|+.+|++. +++..||+|+.++...
T Consensus 15 ~~~~~~~~C~IC~~~~~--~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQ--KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCCCBCTTTCSBCS--SEEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred HhCccCCEeccCCcccC--CeEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 33456789999997643 46656653 67999999999975 4567999999998753
No 14
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.46 E-value=4.4e-05 Score=62.97 Aligned_cols=50 Identities=22% Similarity=0.519 Sum_probs=38.2
Q ss_pred cCCCcceEecCCCCC--CCCcccccccCCccccccHHHHHHHHHccCCCccccccccee
Q 001208 67 EEEEVCRICRNPGDP--ENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~--~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1123)
+++..|.||++.... +.+...||. |.+|.+|+.+|++.+ ..||+|+.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 345789999987533 224557763 679999999999876 79999998763
No 15
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.43 E-value=4.4e-05 Score=63.06 Aligned_cols=51 Identities=20% Similarity=0.552 Sum_probs=37.3
Q ss_pred cCCCcceEecCCCCCCC-CcccccccCCccccccHHHHHHHHHccCCCccccccccee
Q 001208 67 EEEEVCRICRNPGDPEN-PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~-~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1123)
+++..|.||+++.+.++ +...| .| .|.+|.+|+.+|++. +.+||+|+.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~-~C---~H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLP-RC---GHGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECS-SS---CCEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECC-CC---CCcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 45578999998765433 33444 23 267999999999975 468999998764
No 16
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=7.6e-05 Score=64.19 Aligned_cols=55 Identities=20% Similarity=0.453 Sum_probs=40.7
Q ss_pred cccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeeccc
Q 001208 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPV 127 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~i 127 (1123)
..++...|.||++.. .+|...||. |.+|.+|+.+|++ +++..||+|+.++....+
T Consensus 11 ~~~~~~~C~IC~~~~--~~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVL--CSPKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCEECTTTCCEE--SSCCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCTTTC
T ss_pred cCCcCCCCCCCChHh--cCeeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCChhhc
Confidence 345568899998754 345555654 5699999999997 345689999999876543
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=4.6e-05 Score=66.59 Aligned_cols=53 Identities=17% Similarity=0.412 Sum_probs=40.8
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeeccc
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPV 127 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~i 127 (1123)
.++...|.||++.. .++...||. |.+|.+|+.+|+..+ ..|++|+.++....+
T Consensus 12 ~~~~~~C~IC~~~~--~~~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 12 SLTVPECAICLQTC--VHPVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPEDFL 64 (71)
T ss_dssp SSSCCBCSSSSSBC--SSEEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCHHHH
T ss_pred CCCCCCCccCCccc--CCCEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCHhhc
Confidence 45567899998764 346666764 679999999999754 699999999876443
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=9.8e-05 Score=66.09 Aligned_cols=51 Identities=29% Similarity=0.648 Sum_probs=40.1
Q ss_pred ccccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCccccccccee
Q 001208 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1123)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1123)
++.++...|.||++.. .+|...||. |.+|..|+.+|++. ...||+|+.++.
T Consensus 10 ~~~~~~~~C~IC~~~~--~~p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 10 EEEEIPFRCFICRQAF--QNPVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp SCCCCCSBCSSSCSBC--CSEEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred ccCCCCCCCcCCCchh--cCeeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 4455668999998764 346677764 67899999999975 469999999985
No 19
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=5.1e-05 Score=65.24 Aligned_cols=51 Identities=20% Similarity=0.475 Sum_probs=37.6
Q ss_pred ccCCCcceEecCCCCC----CC-CcccccccCCccccccHHHHHHHHHccCCCccccccccee
Q 001208 66 EEEEEVCRICRNPGDP----EN-PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~----~~-~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1123)
.++...|.||++.... .+ +...||. |.+|.+|+.+|++. +..||+|+.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 4566889999986431 11 1445664 67999999999986 469999998875
No 20
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.34 E-value=0.00011 Score=69.78 Aligned_cols=52 Identities=29% Similarity=0.536 Sum_probs=37.6
Q ss_pred CCcceEecCCCCCCC------------C-c---ccccccCCccccccHHHHHHHHHc---cCCCcccccccceeec
Q 001208 69 EEVCRICRNPGDPEN------------P-L---RYPCACSGSIKFVHQDCLLQWLNH---SNARQCEVCKHAFSFS 125 (1123)
Q Consensus 69 ~~~CRIC~~~~~~~~------------~-L---~~PC~C~Gsi~~vH~~CL~~Wl~~---s~~~~CelC~~~f~~~ 125 (1123)
++.|-||++..+... + . ..||. |.+|.+||.+|+.. +++..||+|+..|..+
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 358999997643211 1 1 34543 78999999999975 3467999999999765
No 21
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.30 E-value=9.3e-05 Score=83.12 Aligned_cols=61 Identities=28% Similarity=0.499 Sum_probs=45.2
Q ss_pred ccccCCCcceEecCCCCCCCCc-ccccccCCccccccHHHHHHHHHccCC---------Ccccccccceee
Q 001208 64 EEEEEEEVCRICRNPGDPENPL-RYPCACSGSIKFVHQDCLLQWLNHSNA---------RQCEVCKHAFSF 124 (1123)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L-~~PC~C~Gsi~~vH~~CL~~Wl~~s~~---------~~CelC~~~f~~ 124 (1123)
+++++...|-||++...+++.+ ...|.-..+.+.+|+.||.+|+++.++ ..||.|+++.+.
T Consensus 303 e~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 303 EEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp TCCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3456788999999876543444 345765566788999999999986532 589999998764
No 22
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.20 E-value=0.00041 Score=61.80 Aligned_cols=53 Identities=23% Similarity=0.555 Sum_probs=41.4
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHcc----CCCcccccccceeec
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS----NARQCEVCKHAFSFS 125 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s----~~~~CelC~~~f~~~ 125 (1123)
.++...|.||++.. .+|...||. |.+|..|+.+|+..+ +...||+|+.++...
T Consensus 16 ~~~~~~C~IC~~~~--~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELL--KEPVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCC--SSCEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhh--CcceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 34567899998764 346666754 569999999999885 378999999998754
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.16 E-value=8.3e-05 Score=64.54 Aligned_cols=49 Identities=31% Similarity=0.713 Sum_probs=38.6
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
.++...|.||++.... ...||. |.+|.+|+.+|+. ++..||+|+.++.-
T Consensus 12 ~~~~~~C~IC~~~~~~---~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD---LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCCS---EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCccC---cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 3556899999986543 567764 6799999999998 46799999988764
No 24
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.11 E-value=0.00047 Score=62.02 Aligned_cols=59 Identities=19% Similarity=0.533 Sum_probs=46.6
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeeccccc
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYA 129 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~iy~ 129 (1123)
+++..|-||++..+.+++...||.|. |.+++.|+.++... +...||+|+.+|...++..
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSSCSSCC
T ss_pred ccCCcCCccCccCccccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCCCchhh
Confidence 45578999999765556778899885 46999999999764 5679999999998766543
No 25
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.08 E-value=0.0005 Score=58.38 Aligned_cols=48 Identities=25% Similarity=0.544 Sum_probs=36.4
Q ss_pred ccccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHcc-CCCccccc
Q 001208 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS-NARQCEVC 118 (1123)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s-~~~~CelC 118 (1123)
++.+++..|.||++... +|...||. |.+|++|+.+|++.+ ++..||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQ--KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCS--SCEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhC--CeEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 33456789999997643 46666654 679999999999853 56799998
No 26
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.07 E-value=9.3e-05 Score=71.76 Aligned_cols=54 Identities=22% Similarity=0.413 Sum_probs=0.9
Q ss_pred CCCcceEecCCCCCCC--------------CcccccccCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001208 68 EEEVCRICRNPGDPEN--------------PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1123)
Q Consensus 68 ~~~~CRIC~~~~~~~~--------------~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1123)
+.+.|-||+++.+... -.+....| .|.+|..|+.+|++.+ ..||+|+.+|.+++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C---~H~FH~~CI~~Wl~~~--~~CP~Cr~~~~~~k 114 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC---NHAFHFHCISRWLKTR--QVCPLDNREWEFQK 114 (117)
T ss_dssp CC-----------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCc---CceEcHHHHHHHHHcC--CcCCCCCCeeeeec
Confidence 4578999998754211 01111123 2679999999999874 68999999998753
No 27
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.07 E-value=0.00037 Score=60.98 Aligned_cols=53 Identities=15% Similarity=0.375 Sum_probs=39.7
Q ss_pred cccCCCcceEecCCCCCCCCcc-cccccCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001208 65 EEEEEEVCRICRNPGDPENPLR-YPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~-~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1123)
+.++...|.||++... +|.. .||. |.+|.+|+.+|++. +..||+|+.++....
T Consensus 11 ~~~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 11 ELTPYILCSICKGYLI--DATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCGGGSCTTTSSCCS--SCEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCSSC
T ss_pred hcCCCCCCCCCChHHH--CcCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCccc
Confidence 3455688999987543 3544 3654 67999999999976 469999999987643
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.06 E-value=0.00073 Score=60.13 Aligned_cols=53 Identities=26% Similarity=0.533 Sum_probs=41.2
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc----cCCCcccccccceeec
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH----SNARQCEVCKHAFSFS 125 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~----s~~~~CelC~~~f~~~ 125 (1123)
.++...|.||++... +|...||. |.+|.+|+.+|++. .+...||+|+.++...
T Consensus 16 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 16 VKEEVTCPICLELLT--QPLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCCTTTCSCCS--SCBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred ccCCCCCCCCCcccC--CceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 455688999998653 46666654 56999999999987 3478999999998754
No 29
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.06 E-value=0.00028 Score=64.50 Aligned_cols=53 Identities=21% Similarity=0.514 Sum_probs=42.2
Q ss_pred ccccCCCcceEecCCCCCCCCcccc-cccCCccccccHHHHHHHHHccCCCccccccccee
Q 001208 64 EEEEEEEVCRICRNPGDPENPLRYP-CACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFS 123 (1123)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~P-C~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1123)
++.+++-.|.||++.. .+|...| |. |.+++.|+.+|+..+++..||+|+.++.
T Consensus 8 ~~~~~~~~C~IC~~~~--~~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 8 DPIPDELLCLICKDIM--TDAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCTTTEETTTTEEC--SSCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred ccCCcCCCCCCCChhh--cCceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3456678999998754 3577677 43 6699999999999887889999999974
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.96 E-value=0.00059 Score=56.60 Aligned_cols=46 Identities=22% Similarity=0.619 Sum_probs=35.1
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc-cCCCccccc
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH-SNARQCEVC 118 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~-s~~~~CelC 118 (1123)
.++...|.||++... +|...||. |.+|.+|+.+|++. +++..||+|
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLK--EPVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCS--SCCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccC--ccEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 455689999997653 45666654 56999999999875 456799998
No 31
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.85 E-value=0.00046 Score=59.37 Aligned_cols=50 Identities=22% Similarity=0.610 Sum_probs=37.8
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
+++..|.||++... +.....||. |.+|.+|+.+|++.+ ..||+|+.++..
T Consensus 3 ~~~~~C~IC~~~~~-~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPS-NYSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCC-SCEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred CCCCCCeeCCcccc-CCcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence 45578999998643 212556764 679999999999764 699999998763
No 32
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=96.78 E-value=0.00027 Score=61.19 Aligned_cols=52 Identities=17% Similarity=0.461 Sum_probs=38.2
Q ss_pred cCCCcceEecCCCCC----CC-CcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 67 EEEEVCRICRNPGDP----EN-PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~----~~-~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
+++..|-||++.... ++ ....||. |.+|.+|+.+|++.+ ..||+|+.++..+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccChh
Confidence 456789999976421 11 1455654 679999999999865 5999999998754
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.75 E-value=0.00041 Score=61.30 Aligned_cols=53 Identities=26% Similarity=0.578 Sum_probs=41.2
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHcc-----CCCcccccccceeec
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS-----NARQCEVCKHAFSFS 125 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s-----~~~~CelC~~~f~~~ 125 (1123)
.+++..|.||++.. .+|...||. |.+|.+|+.+|++.+ +...||+|+.++...
T Consensus 9 ~~~~~~C~IC~~~~--~~p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 9 VQEEVTCPICLELL--TEPLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCEETTTTEEC--SSCCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cccCCCCcCCCccc--CCeeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 45568899999764 346666654 679999999999874 367999999998764
No 34
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.54 E-value=0.0019 Score=57.03 Aligned_cols=52 Identities=13% Similarity=0.296 Sum_probs=40.5
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
..++-.|.||++.. .+|...||. |.+++.|+.+|++. ++.+||+|+.++...
T Consensus 5 ~~~~~~C~IC~~~~--~~Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELM--KDPVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCC--SSEEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccc--cCCEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCChh
Confidence 45668999998754 357666654 67999999999974 467999999998754
No 35
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=96.53 E-value=0.00047 Score=58.18 Aligned_cols=51 Identities=20% Similarity=0.456 Sum_probs=37.2
Q ss_pred CCCcceEecCCCCC-----CCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 68 EEEVCRICRNPGDP-----ENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 68 ~~~~CRIC~~~~~~-----~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
++..|.||++.... ..+...||. |.+|.+|+.+|++. +..||+|+.++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCcc
Confidence 45789999976421 112345654 67999999999986 46999999988643
No 36
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.36 E-value=0.0015 Score=66.27 Aligned_cols=51 Identities=22% Similarity=0.574 Sum_probs=37.7
Q ss_pred cCCCcceEecCCCCCCCCccc-ccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 67 EEEEVCRICRNPGDPENPLRY-PCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~-PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
++...|.||++... +|... || .|.+|..|+.+|+.. ++..||+|+.++.-.
T Consensus 52 ~~~~~C~IC~~~~~--~p~~~~~C-----gH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 52 HSELMCPICLDMLK--NTMTTKEC-----LHRFCADCIITALRS-GNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHHBCTTTSSBCS--SEEEETTT-----CCEEEHHHHHHHHHT-TCCBCTTTCCBCCSG
T ss_pred CCCCCCcccChHhh--CcCEeCCC-----CChhHHHHHHHHHHh-CcCCCCCCCCcCCCc
Confidence 45578999987543 34433 44 367999999999985 357899999998643
No 37
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.23 E-value=0.0014 Score=61.27 Aligned_cols=54 Identities=22% Similarity=0.482 Sum_probs=40.8
Q ss_pred cccCCCcceEecCCCCCCCCcc-cccccCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001208 65 EEEEEEVCRICRNPGDPENPLR-YPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~-~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1123)
.-+++..|.||++... +|.. .|| .|.+|..|+.+|++.++ ..||+|+.++....
T Consensus 18 ~l~~~~~C~IC~~~~~--~p~~~~~C-----gH~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLR--DARLCPHC-----SKLCCFSCIRRWLTEQR-AQCPHCRAPLQLRE 72 (100)
T ss_dssp HHHHHTBCTTTCSBCS--SEEECTTT-----CCEEEHHHHHHHHHHTC-SBCTTTCCBCCGGG
T ss_pred cCCCCCCCccCCcccc--CccccCCC-----CChhhHHHHHHHHHHCc-CCCCCCCCcCCHHH
Confidence 3456688999987542 3444 454 47799999999999764 69999999997643
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.15 E-value=0.0014 Score=63.27 Aligned_cols=50 Identities=24% Similarity=0.457 Sum_probs=39.2
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
++...|.||++... +|...||. |.+|..|+.+|+.. +...||+|+.++..
T Consensus 50 ~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVF--RPITTVCQ-----HNVCKDCLDRSFRA-QVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCS--SEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHc--CcEEeeCC-----CcccHHHHHHHHhH-CcCCCCCCCccCCC
Confidence 45579999987643 56666764 56999999999983 45699999999875
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.88 E-value=0.0053 Score=57.72 Aligned_cols=52 Identities=25% Similarity=0.576 Sum_probs=39.9
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHcc-CCCcccccccceeec
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHS-NARQCEVCKHAFSFS 125 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s-~~~~CelC~~~f~~~ 125 (1123)
++...|.||++.. .+|...||. |.+|..|+.+|+..+ +...||+|+.++...
T Consensus 19 ~~~~~C~IC~~~~--~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 19 QKILECPICLELI--KEPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HHHTSCSSSCCCC--SSCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred cCCCCCcccChhh--cCeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 3457899998754 346666654 679999999999875 356899999988754
No 40
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=95.85 E-value=0.0037 Score=57.85 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=37.5
Q ss_pred cCCCcceEecCCCCCCCCccc-ccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 67 EEEEVCRICRNPGDPENPLRY-PCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~-PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
++...|.||++... +|... ||. |.+|..|+.+|+.. +..||+|+.++..
T Consensus 20 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFN--IAMIIPQCS-----HNYCSLCIRKFLSY--KTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCS--SEEECTTTC-----CEEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhC--CcCEECCCC-----CHhhHHHHHHHHHC--CCCCCCCCCcCCh
Confidence 45678999987643 35443 554 67999999999985 4699999999875
No 41
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=95.73 E-value=0.0016 Score=64.37 Aligned_cols=49 Identities=22% Similarity=0.579 Sum_probs=37.8
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
+++..|.||++.. .+|...||. |.+|..|+.+|+.. +..||+|+.++.-
T Consensus 51 ~~~~~C~iC~~~~--~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 51 ENELQCIICSEYF--IEAVTLNCA-----HSFCSYCINEWMKR--KIECPICRKDIKS 99 (138)
T ss_dssp HHHSBCTTTCSBC--SSEEEETTS-----CEEEHHHHHHHTTT--CSBCTTTCCBCCC
T ss_pred cccCCCcccCccc--CCceECCCC-----CCccHHHHHHHHHc--CCcCCCCCCcCCC
Confidence 3446799998764 356667763 67999999999975 4689999998754
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=95.73 E-value=0.0027 Score=63.81 Aligned_cols=52 Identities=23% Similarity=0.515 Sum_probs=40.1
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1123)
++...|.||++.. .+|...||. +.++..|+.+|+.. +...||+|+..+...+
T Consensus 76 ~~~~~C~IC~~~~--~~pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~ 127 (150)
T 1z6u_A 76 EQSFMCVCCQELV--YQPVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQNY 127 (150)
T ss_dssp HHHTBCTTTSSBC--SSEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTTC
T ss_pred ccCCEeecCChhh--cCCEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCCC
Confidence 3457899998754 356667764 56999999999985 4458999999987653
No 43
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.72 E-value=0.0034 Score=53.56 Aligned_cols=52 Identities=17% Similarity=0.429 Sum_probs=36.6
Q ss_pred CCCcceEecC-CCC-CCCC-cccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 68 EEEVCRICRN-PGD-PENP-LRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 68 ~~~~CRIC~~-~~~-~~~~-L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
++..|.||++ ... +..+ ...||. |.+|++|+.+|+.. ++..||+|+.++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCccccc
Confidence 3568999987 322 2111 345654 56999999999875 457899999998643
No 44
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.61 E-value=0.0041 Score=71.51 Aligned_cols=52 Identities=19% Similarity=0.608 Sum_probs=40.4
Q ss_pred CCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeeccc
Q 001208 68 EEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPV 127 (1123)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~i 127 (1123)
+...|.||++.. .++...||. |.+|..|+.+|+.. ++..||+|+.++....+
T Consensus 331 ~~~~C~ICle~~--~~pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 331 TFQLCKICAEND--KDVKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSSBCTTTSSSB--CCEEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCEEEE
T ss_pred CCCCCCccCcCC--CCeEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCCcee
Confidence 347999998754 457778875 45799999999984 45799999999876543
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=95.51 E-value=0.0046 Score=58.90 Aligned_cols=53 Identities=19% Similarity=0.442 Sum_probs=40.5
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1123)
-++...|.||++.. .+|...||. |.+|..|+.+|+..+ +..||+|+.++....
T Consensus 20 ~~~~~~C~IC~~~~--~~p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 20 FVKSISCQICEHIL--ADPVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHHHTBCTTTCSBC--SSEEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCGGG
T ss_pred ccCCCCCCCCCcHh--cCcEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCHhh
Confidence 34568899998754 346666653 679999999999874 458999999987643
No 46
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=95.11 E-value=0.0064 Score=57.20 Aligned_cols=51 Identities=16% Similarity=0.443 Sum_probs=39.0
Q ss_pred ccCCCcceEecCCCCCCCCccc-ccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 66 EEEEEVCRICRNPGDPENPLRY-PCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~-PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
-++...|.||++... +|... ||. |.+|..|+.+|+..+ ..||+|+..+...
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFI--DATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCS--SEEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHh--CcCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCcccccc
Confidence 355688999987543 45543 654 679999999999865 7999999998753
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=94.95 E-value=0.0085 Score=57.40 Aligned_cols=54 Identities=17% Similarity=0.410 Sum_probs=40.4
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeeccc
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPV 127 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~i 127 (1123)
-++.-.|.||++.. .+|...||. +.++..|+.+|++.++. .||+|+.++....+
T Consensus 15 ~~~~~~C~IC~~~~--~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~~~ 68 (118)
T 3hct_A 15 LESKYECPICLMAL--REAVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLENQL 68 (118)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCGGGC
T ss_pred CCCCCCCCcCChhh--cCeEECCcC-----ChhhHHHHHHHHhhCCC-CCCCCCCCcCHHhc
Confidence 34557899998754 346666653 67999999999987643 89999999876433
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=94.90 E-value=0.0027 Score=60.44 Aligned_cols=50 Identities=22% Similarity=0.496 Sum_probs=38.9
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
+++..|.||++.. .+|...||. |.+|..|+.+|+.. ++..|++|+..+..
T Consensus 13 ~~~~~C~iC~~~~--~~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEIL--VEPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBC--SSCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCCccCCccc--CceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 4457899998754 357666764 56999999999975 34799999999875
No 49
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.69 E-value=0.024 Score=49.44 Aligned_cols=54 Identities=22% Similarity=0.489 Sum_probs=37.7
Q ss_pred ccccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceee-ccccc
Q 001208 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF-SPVYA 129 (1123)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~-~~iy~ 129 (1123)
...++...|.||++.. .++...||.-.. +-.+|+.+ ...||+|+.++.- .++|.
T Consensus 10 ~~~~~~~~C~IC~~~~--~~~v~~pCgH~~----~C~~C~~~------~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGT--VNWVLLPCRHTC----LCDGCVKY------FQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp CSCCCSSCCSSSSSSC--CCCEETTTTBCC----SCTTHHHH------CSSCTTTCCCCCCEECCCS
T ss_pred ccCCCCCCCCCcCcCC--CCEEEECCCChh----hhHHHHhc------CCCCCCCCcchhceEEeec
Confidence 4455678999998753 457788987321 66788873 3699999998754 34554
No 50
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=94.58 E-value=0.0026 Score=56.18 Aligned_cols=46 Identities=24% Similarity=0.661 Sum_probs=36.5
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCcccc-ccHHHHHHHHHccCCCcccccccceee
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKF-VHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~-vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
.+++..|.||++.. .++...||. |. +..+|+.+| ..||+|+.++.-
T Consensus 21 ~~~~~~C~iC~~~~--~~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRN--IAIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSB--CCEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCC--CCEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccC
Confidence 34568999999753 457778885 55 899999999 699999998864
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=94.53 E-value=0.006 Score=58.60 Aligned_cols=53 Identities=17% Similarity=0.433 Sum_probs=38.9
Q ss_pred cCCCcceEecCCCCC-----CCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001208 67 EEEEVCRICRNPGDP-----ENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~-----~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1123)
+++..|-||++.... +.+...||. |.+|.+|+.+|++.+ ..||+|+..+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTC--SBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhC--CCCCCCCCcCcccc
Confidence 345789999976421 112456664 679999999999865 49999999987654
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.21 E-value=0.012 Score=49.13 Aligned_cols=48 Identities=23% Similarity=0.580 Sum_probs=36.1
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
+++...|.||++... +|...||. |.+++.|+.+ .+..|++|++++...
T Consensus 3 e~~~~~C~IC~~~~~--~p~~l~Cg-----H~fC~~Ci~~-----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 3 EFQFLRCQQCQAEAK--CPKLLPCL-----HTLCSGCLEA-----SGMQCPICQAPWPLG 50 (56)
T ss_dssp SCCCSSCSSSCSSCB--CCSCSTTS-----CCSBTTTCSS-----SSSSCSSCCSSSSCC
T ss_pred cccCCCceEeCCccC--CeEEcCCC-----CcccHHHHcc-----CCCCCCcCCcEeecC
Confidence 456678999987653 46777865 4588999877 356899999998763
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=93.78 E-value=0.018 Score=49.30 Aligned_cols=50 Identities=12% Similarity=0.301 Sum_probs=36.4
Q ss_pred cccCCCcceEecCCCCCCCCcc--cccccCCcccc-ccHHHHHHHHHccCCCccccccccee
Q 001208 65 EEEEEEVCRICRNPGDPENPLR--YPCACSGSIKF-VHQDCLLQWLNHSNARQCEVCKHAFS 123 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~--~PC~C~Gsi~~-vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1123)
.++....|.||++.. .++.+ .||. |. +-.+|..+|.+.+ ..||+|+.++.
T Consensus 3 ~~~~~~~C~IC~~~~--~~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CPiCR~~i~ 55 (63)
T 2vje_B 3 CQNLLKPCSLCEKRP--RDGNIIHGRTG-----HLVTCFHCARRLKKAG--ASCPICKKEIQ 55 (63)
T ss_dssp CGGGGSBCTTTSSSB--SCEEEEETTEE-----EEEECHHHHHHHHHTT--CBCTTTCCBCC
T ss_pred CCCcCCCCcccCCcC--CCeEEEecCCC-----CHhHHHHHHHHHHHhC--CcCCCcCchhh
Confidence 345668999999753 23333 4876 33 6789999998754 68999999875
No 54
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.70 E-value=0.034 Score=60.10 Aligned_cols=52 Identities=15% Similarity=0.447 Sum_probs=40.1
Q ss_pred CCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 68 EEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
.-..|.||.+--..+ .-| ..+...+|..|+.+|++++++..||.|+..+...
T Consensus 179 ~i~~C~iC~~iv~~g----~~C--~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG----QSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC----EEC--SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC----ccc--CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 478999998765532 223 2334579999999999988888999999998764
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=93.44 E-value=0.011 Score=56.84 Aligned_cols=52 Identities=17% Similarity=0.483 Sum_probs=37.2
Q ss_pred cCCCcceEecCCCCC---CCC--cccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 67 EEEEVCRICRNPGDP---ENP--LRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~---~~~--L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
++...|-||++..+. .+. ...||. +.+|..|+.+|++.+ .+||+|+..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHC--SBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcC--CCCCCCCCcCChh
Confidence 456789999875421 111 234442 679999999999865 5999999998754
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=93.06 E-value=0.063 Score=50.10 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=39.2
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
.++-.|-||++-- .+|...||. | +-+-+.|+.+|+.. ..+||+|+.++...
T Consensus 20 p~~~~CpI~~~~m--~dPV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLM--CDPVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccc--cCCeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCChh
Confidence 4568999998753 468887754 1 45789999999985 46899999998754
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.97 E-value=0.035 Score=53.02 Aligned_cols=47 Identities=21% Similarity=0.481 Sum_probs=37.2
Q ss_pred cCCCcceEecCCCCCCCCccc-ccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 67 EEEEVCRICRNPGDPENPLRY-PCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~-PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
++.-.|.||++.. .+|... ||. |.+++.|+.+|+. ..||+|+..+..
T Consensus 20 ~~~~~C~IC~~~~--~~pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 20 EKLLRCSRCTNIL--REPVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAWI 67 (117)
T ss_dssp HHTTSCSSSCSCC--SSCBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCSC
T ss_pred hhCCCCCCCChHh--hCccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCcc
Confidence 5668999998764 346655 664 6799999999987 689999999854
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=92.66 E-value=0.054 Score=58.44 Aligned_cols=52 Identities=10% Similarity=0.019 Sum_probs=40.0
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
..+.-.|-||++-- .+|.+.||. +-+-+.|+.+|+.+++. +||+|+.++...
T Consensus 205 ~~~~~~c~i~~~~~--~dPv~~~~g-----h~f~~~~i~~~~~~~~~-~cP~~~~~~~~~ 256 (281)
T 2c2l_A 205 IPDYLCGKISFELM--REPCITPSG-----ITYDRKDIEEHLQRVGH-FNPVTRSPLTQE 256 (281)
T ss_dssp CCSTTBCTTTCSBC--SSEEECSSC-----CEEETTHHHHHHHHTCS-SCTTTCCCCCGG
T ss_pred CCcccCCcCcCCHh--cCCeECCCC-----CEECHHHHHHHHHHCCC-CCcCCCCCCchh
Confidence 34567899998753 468888863 45778999999987554 499999998754
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.44 E-value=0.028 Score=49.56 Aligned_cols=45 Identities=24% Similarity=0.716 Sum_probs=34.1
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCcccc-ccHHHHHHHHHccCCCcccccccceee
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKF-VHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~-vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
++...|.||++.. .++...||. |. +..+|+.+ ...||+|+.++.-
T Consensus 23 ~~~~~C~IC~~~~--~~~~~~pCg-----H~~~C~~C~~~------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRN--IAIVFVPCG-----HLVTCKQCAEA------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSC--CCBCCSSSC-----CCCBCHHHHHH------CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCC--CCEEEecCC-----CHHHHHHHhhC------CCCCccCCceecC
Confidence 4457899998753 457778885 45 78999853 3699999998864
No 60
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=92.32 E-value=0.097 Score=49.02 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=39.9
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
..++-.|-||++-- .+|...||. +-+-+.|+.+|+.. ..+||+|+.++...
T Consensus 26 ~p~~~~CpI~~~~m--~dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 26 APDEFRDPLMDTLM--TDPVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTES 76 (100)
T ss_dssp CSTTTBCTTTCSBC--SSEEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCTT
T ss_pred CcHhhCCcCccCcc--cCCeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCChh
Confidence 34568999998653 468888863 45889999999984 57999999998753
No 61
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=92.24 E-value=0.095 Score=47.46 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=40.0
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
..++-.|-||++-- .+|...||. +-+-+.|+.+|+.. ..+||+|+.++...
T Consensus 11 ~p~~~~CpI~~~~m--~dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLM--TDPVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBC--SSEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCGG
T ss_pred CchheECcccCchh--cCCeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCChH
Confidence 34578999998753 468888853 45889999999984 46999999998764
No 62
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=91.91 E-value=0.037 Score=55.00 Aligned_cols=52 Identities=25% Similarity=0.542 Sum_probs=38.1
Q ss_pred cccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
.-++.-.|-||++.. .+|...||. +.+++.|+.+|++. +...|++|+.+..+
T Consensus 27 ~l~~~~~C~IC~~~~--~~pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 27 KLEAKYLCSACRNVL--RRPFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEGIY 78 (141)
T ss_dssp GCCGGGBCTTTCSBC--SSEEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTTCC
T ss_pred cCCcCcCCCCCChhh--cCcEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCcccc
Confidence 345667899998754 346555543 56999999999974 34689999997644
No 63
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=91.31 E-value=0.081 Score=45.34 Aligned_cols=48 Identities=19% Similarity=0.437 Sum_probs=34.9
Q ss_pred cCCCcceEecCCCCCCCCccc--ccccCCcccc-ccHHHHHHHHHccCCCccccccccee
Q 001208 67 EEEEVCRICRNPGDPENPLRY--PCACSGSIKF-VHQDCLLQWLNHSNARQCEVCKHAFS 123 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~--PC~C~Gsi~~-vH~~CL~~Wl~~s~~~~CelC~~~f~ 123 (1123)
+++..|.||++.. .++.+. ||. |. +=.+|+.+|.+. +..||+|+.++.
T Consensus 6 ~~~~~C~IC~~~~--~~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRP--KNGCIVHGKTG-----HLMACFTCAKKLKKR--NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSC--SCEEEEETTEE-----EEEECHHHHHHHHHT--TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCC--CCEEEECCCCC-----ChhhHHHHHHHHHHc--CCcCCCcCcchh
Confidence 4557899999753 344544 876 33 347999999975 358999999875
No 64
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=89.02 E-value=0.12 Score=52.21 Aligned_cols=53 Identities=17% Similarity=0.416 Sum_probs=39.2
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1123)
-++.-.|-||++.. .+|...||. +.+...|+.+|++.++ ..||+|+..+....
T Consensus 15 ~~~~~~C~IC~~~~--~~pv~~~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 15 LESKYECPICLMAL--REAVQTPCG-----HRFCKACIIKSIRDAG-HKCPVDNEILLENQ 67 (170)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTS-----CEEEHHHHHHHHHHHC-SBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCChhh--cCcEECCCC-----CHHHHHHHHHHHHhCC-CCCCCCccCcchhh
Confidence 34567899998754 346655542 6699999999998754 49999999886543
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=88.92 E-value=0.16 Score=52.65 Aligned_cols=52 Identities=10% Similarity=0.011 Sum_probs=40.3
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~ 125 (1123)
..+.-.|-||.+-- .+|.+.||. +-+=+.|+.+|+...+. +||+|+.++...
T Consensus 103 ip~~f~CPI~~elm--~DPV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~~ 154 (179)
T 2f42_A 103 IPDYLCGKISFELM--REPCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQD 154 (179)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCGG
T ss_pred CcHhhcccCccccC--CCCeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCChh
Confidence 34568899998754 468888863 45889999999987554 799999998754
No 66
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=87.99 E-value=0.27 Score=53.77 Aligned_cols=54 Identities=20% Similarity=0.397 Sum_probs=39.8
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccc--cccceeecc
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEV--CKHAFSFSP 126 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~Cel--C~~~f~~~~ 126 (1123)
..+-.|-||.+- +..|+..+.|.|-+=+.|+.+|+..++...||+ |++.+....
T Consensus 179 ~~el~CPIcl~~------f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 179 KIELTCPITCKP------YEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp BCCSBCTTTSSB------CSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred ceeeECcCccCc------ccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 455789999864 333443333346789999999998777789999 999887643
No 67
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=87.80 E-value=0.19 Score=43.71 Aligned_cols=49 Identities=14% Similarity=0.349 Sum_probs=36.5
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc--cCCCcccccccc
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHA 121 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~ 121 (1123)
......|.||.+.+ .++. |.++-+.+|..||.-.+.. ++.++|+.|...
T Consensus 9 ~~~~~~C~vC~~~~----~ll~---Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 9 LAPGARCGVCGDGT----DVLR---CTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCCCTTTSCCT----TCEE---CSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCCcCCCCCCC----eEEE---CCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 44567899997542 3432 7788889999999877765 367999999865
No 68
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.67 E-value=0.062 Score=49.34 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=41.7
Q ss_pred cccCCCcceEecCCCC-CCCCcccccccCCccccccHHHHHHHHH------ccCCCcccccccceeec
Q 001208 65 EEEEEEVCRICRNPGD-PENPLRYPCACSGSIKFVHQDCLLQWLN------HSNARQCEVCKHAFSFS 125 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~-~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~------~s~~~~CelC~~~f~~~ 125 (1123)
..++...|.+|..... .++.++. |.++-+.+|+.|+.-=+. -.+.+.|..|....+..
T Consensus 12 ~~e~~~~C~vC~~~~~~~~~~ll~---CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 12 AMEMGLACVVCRQMTVASGNQLVE---CQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp HHHHCCSCSSSCCCCCCTTCCEEE---CSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred cCCCCCcCCCCCCCCCCCCCceEE---CCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 4456789999987643 2355644 677778899999865443 24689999998876654
No 69
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=86.41 E-value=0.16 Score=46.70 Aligned_cols=54 Identities=24% Similarity=0.437 Sum_probs=37.6
Q ss_pred ccCCCcceEecCCCC-CCCCcccccccCCccccccHHHHHHHHHccCCCcccccccce
Q 001208 66 EEEEEVCRICRNPGD-PENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAF 122 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~-~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f 122 (1123)
.++...|.||...++ .++.++. |.++-..+|+.|+.-=..-.+.+.|+.|...-
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~---CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILF---CDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEE---CSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEE---CCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 456689999987652 3345543 56777789999985323345789999997653
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=84.72 E-value=0.12 Score=58.72 Aligned_cols=45 Identities=27% Similarity=0.724 Sum_probs=35.5
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCcccc-ccHHHHHHHHHccCCCcccccccceee
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKF-VHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~-vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
+++..|.||++.. .++...||. |. +...|+.+| ..||+|+..+.-
T Consensus 293 ~~~~~C~IC~~~~--~~~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKE--VSVVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSB--CCEEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcC--CceEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccC
Confidence 4668999998754 457777886 44 788999888 689999998864
No 71
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=84.14 E-value=0.18 Score=44.52 Aligned_cols=53 Identities=25% Similarity=0.468 Sum_probs=37.2
Q ss_pred ccCCCcceEecCCC-CCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccc
Q 001208 66 EEEEEVCRICRNPG-DPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHA 121 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~-~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~ 121 (1123)
.++.+.|.||...+ +.++.++. |.++-..+|+.|+.-=..-++.+.|+.|..+
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~---CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILF---CDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEE---CSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEE---CCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 35568999998765 23445543 6677788999998532234578999999754
No 72
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=83.51 E-value=0.45 Score=41.97 Aligned_cols=50 Identities=18% Similarity=0.478 Sum_probs=33.3
Q ss_pred ccccCCCcceEecCCCCCCCCcccccccCC--cc-ccccHHHHHHHHHc--cCCCcccccccc
Q 001208 64 EEEEEEEVCRICRNPGDPENPLRYPCACSG--SI-KFVHQDCLLQWLNH--SNARQCEVCKHA 121 (1123)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~G--si-~~vH~~CL~~Wl~~--s~~~~CelC~~~ 121 (1123)
.++++...| ||+.... +.++. |.+ +- .++|..|+. +.. +++..|+.|...
T Consensus 11 ~d~~~~~~C-~C~~~~~--g~MI~---CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 11 VDPNEPTYC-LCHQVSY--GEMIG---CDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CCTTSCCCS-TTCCCSC--SSEEC---CSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred cCCCCCCEE-ECCCCCC--CCEeE---eeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 344566788 8987543 34543 444 33 689999987 443 368999999764
No 73
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.52 E-value=0.7 Score=42.40 Aligned_cols=51 Identities=16% Similarity=0.457 Sum_probs=37.7
Q ss_pred cCCCcceEecCCCCCCCCcccc-cccCCccccccHHHHHHHHHcc----CCCcccc--cccc-eee
Q 001208 67 EEEEVCRICRNPGDPENPLRYP-CACSGSIKFVHQDCLLQWLNHS----NARQCEV--CKHA-FSF 124 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~P-C~C~Gsi~~vH~~CL~~Wl~~s----~~~~Cel--C~~~-f~~ 124 (1123)
.++-.|-||++.. .+|...| |. +-+-+.|+.+|+... +..+||+ |+.. +..
T Consensus 5 ~~~~~CPI~~~~~--~dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEM--KKPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBC--SSEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchh--cCCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 4557899998653 3577665 53 568899999999864 3579999 9877 543
No 74
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=81.93 E-value=0.48 Score=43.26 Aligned_cols=53 Identities=19% Similarity=0.341 Sum_probs=36.7
Q ss_pred CCCcceEecCCCCCCCCcc-cccccCCccccccHHHHHHHHHcc---C---CCcccc--cccceeec
Q 001208 68 EEEVCRICRNPGDPENPLR-YPCACSGSIKFVHQDCLLQWLNHS---N---ARQCEV--CKHAFSFS 125 (1123)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L~-~PC~C~Gsi~~vH~~CL~~Wl~~s---~---~~~Cel--C~~~f~~~ 125 (1123)
+.-.|.||++.....+... .||. |.+.++|+.+++..+ + ...||. |+..+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~ 65 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQ 65 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEEC
T ss_pred CCcCCcccCcccccccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccC
Confidence 3567999998654322221 3665 569999999999753 2 368999 99986543
No 75
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.82 E-value=0.61 Score=43.16 Aligned_cols=50 Identities=18% Similarity=0.472 Sum_probs=32.5
Q ss_pred cccCCCcceEecCCCCCCCCcccccccCC--cc-ccccHHHHHHHHHc--cCCCcccccccce
Q 001208 65 EEEEEEVCRICRNPGDPENPLRYPCACSG--SI-KFVHQDCLLQWLNH--SNARQCEVCKHAF 122 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~G--si-~~vH~~CL~~Wl~~--s~~~~CelC~~~f 122 (1123)
++++...| ||+.... +.++. |.+ +. .++|..|+. +.. +++.+|+.|+..-
T Consensus 32 d~~e~~yC-iC~~~~~--g~MI~---CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSY--GEMIG---CDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCBCS-TTCCBCC--SCCCC---CSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCCCcEE-ECCCCCC--CCEeE---ecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34556778 9987543 23433 444 33 689999987 433 3679999998643
No 76
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=81.47 E-value=0.2 Score=44.23 Aligned_cols=55 Identities=18% Similarity=0.378 Sum_probs=37.3
Q ss_pred cccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc--cCCCccccccccee
Q 001208 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHAFS 123 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~f~ 123 (1123)
+.++...|.+|....+ ++.++. |.++-.++|..|+.-=... .+...|+.|..+..
T Consensus 14 ~~~~~~~C~~C~~~~~-~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 14 WGNQIWICPGCNKPDD-GSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SSCEEECBTTTTBCCS-SCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred cCCCCcCCCCCCCCCC-CCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3455678999987654 334433 7788899999997533322 25789999987654
No 77
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=79.20 E-value=0.16 Score=45.32 Aligned_cols=52 Identities=25% Similarity=0.553 Sum_probs=36.4
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeec-cccc
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFS-PVYA 129 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~-~iy~ 129 (1123)
.+++..|.||++.. .++...||.-.. +=.+|+.+| ..||+|+.++.-. ++|.
T Consensus 15 l~~~~~C~IC~~~~--~~~v~~pCgH~~----~C~~C~~~~------~~CP~Cr~~i~~~~~i~~ 67 (79)
T 2yho_A 15 LKEAMLCMVCCEEE--INSTFCPCGHTV----CCESCAAQL------QSCPVCRSRVEHVQHVYL 67 (79)
T ss_dssp HHHHTBCTTTSSSB--CCEEEETTCBCC----BCHHHHTTC------SBCTTTCCBCCEEEECBC
T ss_pred CCCCCEeEEeCccc--CcEEEECCCCHH----HHHHHHHhc------CcCCCCCchhhCeEEEEe
Confidence 34557899998753 457788987321 457898876 3999999987653 3454
No 78
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=74.22 E-value=0.32 Score=51.15 Aligned_cols=52 Identities=27% Similarity=0.579 Sum_probs=37.4
Q ss_pred cccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc--cCCCccccccccee
Q 001208 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHAFS 123 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~f~ 123 (1123)
+++..+.|.+|..++ .++ .|.++-+.+|..|+.--+.. ++.+.|+.|...-+
T Consensus 3 ~d~~~~~C~~C~~~g----~ll---~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 3 DDPNEDWCAVCQNGG----DLL---CCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp CCSSCSSBTTTCCCE----EEE---ECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCCCC----ceE---EcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 345668899998653 243 27788889999998665543 46799999987654
No 79
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=72.11 E-value=1.4 Score=37.42 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=34.1
Q ss_pred CcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceeecc
Q 001208 70 EVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSP 126 (1123)
Q Consensus 70 ~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~~~ 126 (1123)
-.|.||.+.- ++|.+.| -|-+-+=++|+++|++..+ +|++++.+...+.
T Consensus 4 ~~CpIs~~~m--~dPV~~~----~sG~~yer~~I~~~l~~~~--~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVP--RRPVLSP----KSRTIFEKSLLEQYVKDTG--NDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCC--SSEEEET----TTTEEEEHHHHHHHHHHHS--BCTTTCCBCCGGG
T ss_pred EEecCCCCCC--CCCEEeC----CCCcEEcHHHHHHHHHhCC--CCcCCcCCCChhh
Confidence 4688887643 3465541 2224588999999998653 5999999887653
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=67.60 E-value=1.4 Score=37.45 Aligned_cols=50 Identities=18% Similarity=0.513 Sum_probs=35.5
Q ss_pred cccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHH--ccCCCcccccccc
Q 001208 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN--HSNARQCEVCKHA 121 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~--~s~~~~CelC~~~ 121 (1123)
++++.+.|.+|... +.++. |.++-+.+|..|+.-=+. -++.+.|+.|..+
T Consensus 7 ~~~~~~~C~vC~~~----g~ll~---CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG----GEIIL---CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSCCCSSCTTTSCC----SSEEE---CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred cCCCCCCCccCCCC----CcEEE---CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 34566899999864 23433 667778999999875433 2468999999754
No 81
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.83 E-value=0.57 Score=43.30 Aligned_cols=52 Identities=25% Similarity=0.460 Sum_probs=34.7
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHH--ccCCCcccccccc
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN--HSNARQCEVCKHA 121 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~--~s~~~~CelC~~~ 121 (1123)
..+...|.||...++. +.++ .|.++-+.+|..||.-=+. -++.+.|+.|...
T Consensus 13 ~~~~~~C~vC~~~~~~-~~ll---~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDED-DKLL---FCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGG-GGCE---ECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCC-CCEE---EcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4556789999876542 3343 2667778899999852111 2467899999764
No 82
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.14 E-value=2.8 Score=37.35 Aligned_cols=55 Identities=18% Similarity=0.395 Sum_probs=36.3
Q ss_pred cccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc---cCCCccccccccee
Q 001208 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH---SNARQCEVCKHAFS 123 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~---s~~~~CelC~~~f~ 123 (1123)
.+++...| ||....+.++.++. |..+..++|..|+.-=-.. -.+..|+.|.....
T Consensus 8 ~~~~~~~C-~C~~~~d~~~~MIq---Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 8 MALVPVYC-LCRQPYNVNHFMIE---CGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCCCCS-TTSCSCCSSSCEEE---BTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred ccCCccEE-EcCCccCCCCceEE---cCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 34566778 99876554445554 5566789999997421111 25689999997653
No 83
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=63.12 E-value=14 Score=34.06 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=35.7
Q ss_pred cCCCcceEecCCC--CCCCCcccccccCCccccccHHHHHHHHHccCCCcccccccceee
Q 001208 67 EEEEVCRICRNPG--DPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSF 124 (1123)
Q Consensus 67 ~~~~~CRIC~~~~--~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~s~~~~CelC~~~f~~ 124 (1123)
....+|.||-++- +.+..++--|+ -+---|=+.|.+-=.+. ++..|+.||++|+-
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~--eC~FPvCrpCyEYErke-G~q~CpqCktrYkr 70 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACN--ECGFPACRPCYEYERRE-GTQNCPQCKTRYKR 70 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCS--SSCCCCCHHHHHHHHHT-SCSSCTTTCCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeee--ccCChhhHHHHHHHHhc-cCccccccCCcccc
Confidence 3568999997652 23334444332 22223778997654444 67899999999973
No 84
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=61.10 E-value=5.1 Score=39.32 Aligned_cols=48 Identities=27% Similarity=0.609 Sum_probs=34.6
Q ss_pred cccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHH------H---ccCCCcccccc
Q 001208 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWL------N---HSNARQCEVCK 119 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl------~---~s~~~~CelC~ 119 (1123)
++..++.|++|.+++ .|+ -|+++-+-+|.+||..=+ + .++.+.|..|.
T Consensus 53 ~Dg~~~~C~vC~dGG----~Ll---cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 53 SDGMDEQCRWCAEGG----NLI---CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp TTSCBSSCTTTCCCS----EEE---ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCCCCcCeecCCCC----eeE---ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 345667899998753 343 245677889999998642 2 36789999995
No 85
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=60.72 E-value=4.3 Score=40.47 Aligned_cols=47 Identities=28% Similarity=0.620 Sum_probs=35.1
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHH---------ccCCCcccccc
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN---------HSNARQCEVCK 119 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~---------~s~~~~CelC~ 119 (1123)
+..++.|++|.+++ .|+ -|.++-+-+|..||..=+. .++.+.|..|.
T Consensus 60 Dg~~d~C~vC~~GG----~Ll---cCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 60 DGMDEQCRWCAEGG----NLI---CCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp TSCBCSCSSSCCCS----SEE---ECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCCeecccCCCC----cEE---eCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 45678999998764 354 2556667899999986542 46789999996
No 86
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=59.52 E-value=1.4 Score=44.67 Aligned_cols=52 Identities=19% Similarity=0.443 Sum_probs=35.2
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHH---ccCCCcccccccce
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN---HSNARQCEVCKHAF 122 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~---~s~~~~CelC~~~f 122 (1123)
++...| +|...+++++.++. |.++-.++|..|+.-=-. ..+...|+.|+..-
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~---Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIG---CDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEE---CTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeE---CCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 556789 99876554445543 667889999999842111 24578999998653
No 87
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=59.22 E-value=1.3 Score=37.62 Aligned_cols=49 Identities=27% Similarity=0.581 Sum_probs=33.9
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc--cCCCcccccccc
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHA 121 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~ 121 (1123)
++++..|.+|...+ .|+ .|.++-+.+|..|+.-=+.. ++.+.|+.|..+
T Consensus 6 d~~~~~C~vC~~~g----~ll---~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDGG----ELL---CCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCCS----SCB---CCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCCC----CEE---EcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45568899997642 343 26677778999998643332 367899999754
No 88
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=55.96 E-value=1.5 Score=44.99 Aligned_cols=48 Identities=29% Similarity=0.648 Sum_probs=34.8
Q ss_pred CCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc--cCCCcccccccce
Q 001208 68 EEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHAF 122 (1123)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~f 122 (1123)
.++.|.+|..++ .++ .|.++-+.+|..|+.--+.. ++.+.|+.|+..=
T Consensus 3 ~~~~C~~C~~~g----~ll---~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGG----ELL---CCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCS----SCE---ECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCC----eee---ecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 457899998653 242 37778888999998655543 4679999999754
No 89
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=55.91 E-value=1.5 Score=51.99 Aligned_cols=52 Identities=21% Similarity=0.427 Sum_probs=32.8
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc---cCCCcccccccce
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH---SNARQCEVCKHAF 122 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~---s~~~~CelC~~~f 122 (1123)
.+...| ||....++++.++. |..|-.++|..|+--=-.. -++..|+.|+...
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIq---Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIE---CDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEE---BTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCCeEE-eCCCcCCCCCCeEE---ccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 444556 88765544555654 5667789999997321111 1458999998653
No 90
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=53.85 E-value=1.2 Score=37.82 Aligned_cols=47 Identities=19% Similarity=0.502 Sum_probs=30.0
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCC--cc-ccccHHHHHHHHHc--cCCCccccccc
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSG--SI-KFVHQDCLLQWLNH--SNARQCEVCKH 120 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~G--si-~~vH~~CL~~Wl~~--s~~~~CelC~~ 120 (1123)
+++...| ||+.... +.++. |.+ .. .++|..|+. +.. +++..|+.|..
T Consensus 7 ~~e~~~C-~C~~~~~--g~mi~---CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC-LCHQVSY--GEMIG---CDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET-TTTEECC--SEEEE---CSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEE-ECCCcCC--CCEEE---eCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4456777 8986533 34442 444 33 689999987 543 36789999975
No 91
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=52.67 E-value=4.9 Score=34.72 Aligned_cols=51 Identities=24% Similarity=0.490 Sum_probs=30.8
Q ss_pred ccCCCcceEecCCCCCCCCcccccccC-CccccccHHHHH------HHHH--ccCCCcccccc
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACS-GSIKFVHQDCLL------QWLN--HSNARQCEVCK 119 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~-Gsi~~vH~~CL~------~Wl~--~s~~~~CelC~ 119 (1123)
+++...|-+|+...+++..++. |. ++.+++|..|.- +=+. .+....|+-|.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~---CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAIL---CEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEE---BTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEe---cccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 4556789999987665555543 55 677899999962 1111 11256788775
No 92
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=51.93 E-value=4.3 Score=35.51 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=36.0
Q ss_pred CCccccccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHH--ccCCCcccccccc
Q 001208 60 DIEEEEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN--HSNARQCEVCKHA 121 (1123)
Q Consensus 60 ~~~~~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~--~s~~~~CelC~~~ 121 (1123)
+.|++++++...| ||....+.++.++. |..+..++|..|+--=-. ...+..|+.|+.+
T Consensus 7 ~~e~~~~~~~~~C-~C~~~~~~g~~mI~---Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 7 GMERGVDNWKVDC-KCGTKDDDGERMLA---CDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp CCSCSSCSSEECC-TTCCCSCCSSCEEE---CSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cccCCCCCcceEe-eCCCccCCCCcEEE---CCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3344445566788 79775443434544 667778999999642111 1246789999754
No 93
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=51.49 E-value=2.3 Score=36.23 Aligned_cols=54 Identities=13% Similarity=0.285 Sum_probs=36.3
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc---cCCCcccccccce
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH---SNARQCEVCKHAF 122 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~---s~~~~CelC~~~f 122 (1123)
++++..|.+|....++++.++. |...-.++|..|+.---.. -.+..|+.|..+.
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~---Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWIC---CDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEE---CSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCCccCCCCCEEE---ccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 3566789999877654445544 6677789999997432211 2568899997643
No 94
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=49.88 E-value=4.3 Score=32.94 Aligned_cols=46 Identities=30% Similarity=0.659 Sum_probs=31.1
Q ss_pred cceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc--cCCCccccccc
Q 001208 71 VCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKH 120 (1123)
Q Consensus 71 ~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~ 120 (1123)
.|.+|...++++ .++. |.+.-+.+|..|+.-=+.. ++.+.|+.|..
T Consensus 2 ~C~vC~~~~~~~-~ll~---Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLIL---CDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEE---CTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEE---CCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 589998765433 4432 6677789999998431222 35789999974
No 95
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=49.53 E-value=2.8 Score=39.58 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=27.6
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHH
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN 108 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~ 108 (1123)
.++++.|.+|.+.++. ++|+ .|.+.-+.+|..||.-...
T Consensus 4 ~~~~~~C~~C~~~g~~-~~ll---~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDL-LDQF---FCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCT-TTSE---ECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCC-cCCe---ECCCCCCCcChHHhCCccc
Confidence 3466899999877643 3443 3577778899999976553
No 96
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=47.05 E-value=1.8 Score=37.05 Aligned_cols=54 Identities=22% Similarity=0.417 Sum_probs=37.3
Q ss_pred ccCCCcceEecCCCC-CCCCcccccccCCccccccHHHHHHHH-----HccCCCcccccccce
Q 001208 66 EEEEEVCRICRNPGD-PENPLRYPCACSGSIKFVHQDCLLQWL-----NHSNARQCEVCKHAF 122 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~-~~~~L~~PC~C~Gsi~~vH~~CL~~Wl-----~~s~~~~CelC~~~f 122 (1123)
++++..|.+|....+ .++.++. |.+.-+.+|+.|+.-=+ ..++.+.|+.|...-
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~---Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVI---CDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEE---CSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEE---CCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 356689999987532 3345543 66777889999986422 245789999997643
No 97
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=46.51 E-value=4.4 Score=38.51 Aligned_cols=46 Identities=24% Similarity=0.379 Sum_probs=29.0
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc--cCCCccccc
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVC 118 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC 118 (1123)
.++++.|.+|.+. ++|+ -|..++.-+.+|..||. +.. +++++|+-|
T Consensus 12 ~~~~~~C~~C~~~----G~ll-~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c 59 (107)
T 4gne_A 12 QMHEDYCFQCGDG----GELV-MCDKKDCPKAYHLLCLN--LTQPPYGKWECPWH 59 (107)
T ss_dssp CSSCSSCTTTCCC----SEEE-ECCSTTCCCEECTGGGT--CSSCCSSCCCCGGG
T ss_pred CCCCCCCCcCCCC----CcEe-EECCCCCCcccccccCc--CCcCCCCCEECCCC
Confidence 4566889999853 2343 36633556789999997 543 245555533
No 98
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.53 E-value=2 Score=35.78 Aligned_cols=48 Identities=29% Similarity=0.663 Sum_probs=33.0
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc--cCCCccccccc
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKH 120 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~ 120 (1123)
+++++.|.+|...+ .++. |.+.-+.+|..|+.-=+.. ++.+.|+.|..
T Consensus 6 ~~~~~~C~vC~~~g----~ll~---Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSG----QLLM---CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSS----CCEE---CSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCC----eEEE---cCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45568899998642 3432 6677789999998643322 36788999864
No 99
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=44.37 E-value=2.2 Score=36.84 Aligned_cols=48 Identities=33% Similarity=0.725 Sum_probs=33.8
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHH--ccCCCcccccccc
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN--HSNARQCEVCKHA 121 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~--~s~~~~CelC~~~ 121 (1123)
.+++.|.+|...+ .|+ .|.++-+.+|..|+.-=+. -++.+.|+.|...
T Consensus 6 ~~~~~C~vC~~~g----~ll---~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDGG----ELI---CCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCCS----SCE---ECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCCC----CEE---EcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 4568999998642 343 2667778899999864332 2367899999754
No 100
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=44.28 E-value=4.8 Score=37.00 Aligned_cols=52 Identities=27% Similarity=0.651 Sum_probs=36.6
Q ss_pred cccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc--cCCCccccccccee
Q 001208 65 EEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHAFS 123 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~f~ 123 (1123)
.++..+.|.+|...+ .|+ .|.++-+-+|..||.-=+.. ++.+.|+.|...-.
T Consensus 21 ~d~n~~~C~vC~~~g----~LL---~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 21 LDDSATICRVCQKPG----DLV---MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSSSSCCSSSCSSS----CCE---ECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred cCCCCCcCcCcCCCC----CEE---ECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 345668999998653 343 27788889999998443322 36799999986543
No 101
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=42.32 E-value=2.5 Score=39.00 Aligned_cols=49 Identities=31% Similarity=0.626 Sum_probs=30.5
Q ss_pred cccCCCcceEecCCCCCCCCcc--cccccCCccccccHHHHHHHHHc--cCCCcccc-ccc
Q 001208 65 EEEEEEVCRICRNPGDPENPLR--YPCACSGSIKFVHQDCLLQWLNH--SNARQCEV-CKH 120 (1123)
Q Consensus 65 ~~~~~~~CRIC~~~~~~~~~L~--~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~Cel-C~~ 120 (1123)
++++...| ||+.... + .++ --|.|.. .++|..|+- |.. +++.+|+. |..
T Consensus 22 ~~~~~~yC-iC~~~~~-g-~MI~CD~c~C~~--eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 22 NNQEEVYC-FCRNVSY-G-PMVACDNPACPF--EWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp --CCSCCS-TTTCCCS-S-SEECCCSSSCSC--SCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCCCcEE-EeCCCCC-C-CEEEecCCCCcc--ccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34556788 9986533 2 344 2233442 689999985 332 36799999 984
No 102
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=41.55 E-value=2.3 Score=35.91 Aligned_cols=49 Identities=29% Similarity=0.640 Sum_probs=34.0
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHH--ccCCCcccccccce
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN--HSNARQCEVCKHAF 122 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~--~s~~~~CelC~~~f 122 (1123)
..++.|.+|...+ .++. |.++-+.+|..|+.-=+. -++.+.|+.|..+.
T Consensus 3 ~~~~~C~vC~~~g----~ll~---Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 3 IHEDFCSVCRKSG----QLLM---CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCCSSCTTTCCCS----SCEE---CSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCCcCCCCCC----cEEE---cCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 4568899998642 3432 667778999999874332 23678999997654
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=41.44 E-value=10 Score=35.91 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=24.9
Q ss_pred cCCCcceEecCCCC-----CCCCcccccccCCccccccHHHHH
Q 001208 67 EEEEVCRICRNPGD-----PENPLRYPCACSGSIKFVHQDCLL 104 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~-----~~~~L~~PC~C~Gsi~~vH~~CL~ 104 (1123)
+....|.+|...++ ..++|+. |.+.-+.+|..||.
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~---C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELIS---CADCGNSGHPSCLK 42 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEE---CTTTCCEECHHHHT
T ss_pred ccCccccccCCchhhCcCCCchhceE---hhhcCCCCCCchhc
Confidence 35688999987542 2235654 77777889999995
No 104
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=41.00 E-value=6 Score=42.33 Aligned_cols=49 Identities=24% Similarity=0.462 Sum_probs=29.8
Q ss_pred CCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHH--ccC-CCcccccccc
Q 001208 69 EEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN--HSN-ARQCEVCKHA 121 (1123)
Q Consensus 69 ~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~--~s~-~~~CelC~~~ 121 (1123)
...|.+|....++ +.++ .|.++-+.+|..||.-=+. -++ .+.|+.|..+
T Consensus 174 ~c~C~vC~~~~~~-~~lL---~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDP-DKQL---MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC---CCE---ECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCC-CCeE---EcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 4578888765443 3443 3778888999999862222 235 7899999753
No 105
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=40.52 E-value=6.4 Score=37.48 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=23.3
Q ss_pred CcceEecCCCC------CCCCcccccccCCccccccHHHHHHH
Q 001208 70 EVCRICRNPGD------PENPLRYPCACSGSIKFVHQDCLLQW 106 (1123)
Q Consensus 70 ~~CRIC~~~~~------~~~~L~~PC~C~Gsi~~vH~~CL~~W 106 (1123)
+.|.+|+.++. ..++|+. |++.-+.+|..||.-.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~---C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVS---CADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEE---CSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeE---eCCCCCccchhhCCCh
Confidence 67999987542 1235544 6666778999998754
No 106
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=38.76 E-value=3 Score=35.36 Aligned_cols=46 Identities=20% Similarity=0.503 Sum_probs=29.7
Q ss_pred cCCCcceEecCCCCCCCCcccccccCC--cc-ccccHHHHHHHHHc--cCCCccccccc
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSG--SI-KFVHQDCLLQWLNH--SNARQCEVCKH 120 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~G--si-~~vH~~CL~~Wl~~--s~~~~CelC~~ 120 (1123)
++...| ||+.... +.++. |.+ .. .++|..|+. +.. +++..|+.|+.
T Consensus 7 ~e~~yC-~C~~~~~--g~mi~---CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSY--GEMIG---CDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECC--SEEEE---CSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCC--CCeeE---eeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 455677 8986532 34443 444 33 689999987 443 36789999975
No 107
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=38.63 E-value=6.2 Score=36.66 Aligned_cols=48 Identities=23% Similarity=0.468 Sum_probs=30.4
Q ss_pred CCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHH-ccCCCccccccc
Q 001208 68 EEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN-HSNARQCEVCKH 120 (1123)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~-~s~~~~CelC~~ 120 (1123)
+.-.| ||....+ ++.++. |.++-.++|..|+.-=.. ......|+.|+.
T Consensus 27 d~vrC-iC~~~~~-~~~mi~---Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHD-DGYMIC---CDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSC-SSCEEE---BTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccC-CCcEEE---cCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34557 7876543 335543 778888999999742111 124689999973
No 108
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.36 E-value=21 Score=31.34 Aligned_cols=51 Identities=24% Similarity=0.512 Sum_probs=32.6
Q ss_pred cCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHH------H-HccCCCcccccccce
Q 001208 67 EEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQW------L-NHSNARQCEVCKHAF 122 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~W------l-~~s~~~~CelC~~~f 122 (1123)
++...| ||....+ ++.++. |.++..++|..|+--= + ....+..|+.|+.+.
T Consensus 14 ~~~~~C-~C~~~~~-~~~MI~---Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 14 PNALYC-ICRQPHN-NRFMIC---CDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TTCCCS-TTCCCCC-SSCEEE---CSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCCEE-ECCCccC-CCCEEE---eCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 345677 8877554 334443 5567789999997311 1 123578999998654
No 109
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=38.29 E-value=5.4 Score=41.36 Aligned_cols=48 Identities=29% Similarity=0.679 Sum_probs=34.0
Q ss_pred CCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHH--ccCCCccccccccee
Q 001208 69 EEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN--HSNARQCEVCKHAFS 123 (1123)
Q Consensus 69 ~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~--~s~~~~CelC~~~f~ 123 (1123)
++.|.+|..++ .++. |.++-+.+|..|+.-=+. -++.+.|+.|...-.
T Consensus 2 ~~~C~~C~~~g----~ll~---Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 2 ATICRVCQKPG----DLVM---CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp CCCBTTTCCCS----SCCC---CTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCC
T ss_pred CCcCccCCCCC----ceeE---CCCCCchhccccCCCCcccCCCCCCCCcCccCCCC
Confidence 57899998653 2332 788888999999743222 246789999987643
No 110
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=37.72 E-value=5.7 Score=37.65 Aligned_cols=49 Identities=20% Similarity=0.593 Sum_probs=32.3
Q ss_pred CcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc--cCCCcccccccc
Q 001208 70 EVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHA 121 (1123)
Q Consensus 70 ~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~ 121 (1123)
..|.+|...++.++.++. |.+.-+.+|..||.-=+.. ++.+.|+.|+.+
T Consensus 62 ~~C~vC~~~~~~~~~ll~---Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~k 112 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLF---CDSCDRGFHMECCDPPLTRMPKGMWICQICRPR 112 (112)
T ss_dssp CCBTTTCCCCCTTCCCEE---CTTTCCEECGGGCSSCCSSCCSSCCCCTTTSCC
T ss_pred CccccccCcCCCccceEE---cCCCCCeeecccCCCCCCCCCCCCeECCCCCCc
Confidence 367777765444445543 6666678999998543433 357899999853
No 111
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=31.81 E-value=39 Score=38.59 Aligned_cols=43 Identities=23% Similarity=0.548 Sum_probs=30.8
Q ss_pred CCCcccccccCCccccccHHH--HHHHHH---ccCCCcccccccceeeccc
Q 001208 82 ENPLRYPCACSGSIKFVHQDC--LLQWLN---HSNARQCEVCKHAFSFSPV 127 (1123)
Q Consensus 82 ~~~L~~PC~C~Gsi~~vH~~C--L~~Wl~---~s~~~~CelC~~~f~~~~i 127 (1123)
..++..||+...| -|-.| +..|+. .++++.||+|+....+..+
T Consensus 256 ~~ri~~PvRg~~C---~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 256 YTRMKYPSKSINC---KHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp SSBCSSEEEETTC---CSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred cccccccCcCCcC---CCcceECHHHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 4568899987765 67777 344553 4578999999998876543
No 112
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=26.96 E-value=4.1 Score=34.88 Aligned_cols=48 Identities=21% Similarity=0.516 Sum_probs=29.2
Q ss_pred ccCCCcceEecCCCCCCCCccc--ccccCCccccccHHHHHHHHHc--cCCCccccccc
Q 001208 66 EEEEEVCRICRNPGDPENPLRY--PCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKH 120 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~--PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~ 120 (1123)
.++...| +|+.... +.++. -|.|+ +.++|-.|+. +.. +++..|+.|..
T Consensus 8 ~~e~~yC-~C~~~~~--g~MI~CD~c~C~--~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 8 PNEPTYC-LCNQVSY--GEMIGCDNEQCP--IEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp --CCEET-TTTEECC--SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCCcEE-ECCCCCC--CCeeeeeCCCCC--cccEecccCC--cCcCCCCCEECcCccc
Confidence 3455777 8987432 23443 22243 2699999986 433 36789999975
No 113
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=23.37 E-value=23 Score=30.76 Aligned_cols=52 Identities=19% Similarity=0.419 Sum_probs=33.3
Q ss_pred ccccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHH-HccCCCccccccc
Q 001208 64 EEEEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWL-NHSNARQCEVCKH 120 (1123)
Q Consensus 64 ~~~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl-~~s~~~~CelC~~ 120 (1123)
+.+.+...| ||....+ ++.++. |.++..++|-.|+.-=- ...++..|+.|+.
T Consensus 14 ~~~~~~~~C-iC~~~~~-~~~MIq---Cd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 14 LYFQGLVTC-FCMKPFA-GRPMIE---CNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CTTTTCCCS-TTCCCCT-TCCEEE---CTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCCCceEe-ECCCcCC-CCCEEE---CCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 445667888 9987544 445554 56667899999974211 1124678888864
No 114
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.67 E-value=12 Score=33.42 Aligned_cols=47 Identities=26% Similarity=0.446 Sum_probs=30.9
Q ss_pred CcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc--cC-CCccccccc
Q 001208 70 EVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SN-ARQCEVCKH 120 (1123)
Q Consensus 70 ~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~-~~~CelC~~ 120 (1123)
..|.+|...++ ++.++. |.+.-+.+|..||.-=+.. ++ .+.|+.|..
T Consensus 27 c~C~vC~~~~~-~~~ll~---CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHE-PNMQLL---CDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCC-STTEEE---CSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCC-CCCEEE---cCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 48899976543 334542 6677788999997522221 35 789999964
No 115
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=22.57 E-value=11 Score=33.03 Aligned_cols=52 Identities=19% Similarity=0.429 Sum_probs=32.0
Q ss_pred CCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc---cCCCccccccccee
Q 001208 68 EEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH---SNARQCEVCKHAFS 123 (1123)
Q Consensus 68 ~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~---s~~~~CelC~~~f~ 123 (1123)
+...| ||....++++.++. |..+..++|..|+.-=-.. .....|+.|.....
T Consensus 9 ~~~yC-iC~~~~~~~~~MI~---Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~ 63 (75)
T 3kqi_A 9 VPVYC-VCRLPYDVTRFMIE---CDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHG 63 (75)
T ss_dssp CCEET-TTTEECCTTSCEEE---CTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHC
T ss_pred CeeEE-ECCCcCCCCCCEEE---cCCCCCCEecccccccccccCCCCEEECCCCcccCC
Confidence 33445 77765444455655 5566689999997422111 14678999986643
No 116
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=22.21 E-value=23 Score=36.55 Aligned_cols=51 Identities=24% Similarity=0.511 Sum_probs=33.9
Q ss_pred CCcceEecCCCCCCC---CcccccccCCccccccHHHHHH------HHH---ccCCCcccccccce
Q 001208 69 EEVCRICRNPGDPEN---PLRYPCACSGSIKFVHQDCLLQ------WLN---HSNARQCEVCKHAF 122 (1123)
Q Consensus 69 ~~~CRIC~~~~~~~~---~L~~PC~C~Gsi~~vH~~CL~~------Wl~---~s~~~~CelC~~~f 122 (1123)
+..|-||....++++ +++ .|.++-.++|..|..- =++ ....-.|+.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MI---qCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMM---QCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEE---ECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeE---ECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 467999987655443 343 5889999999999631 111 11267999998654
No 117
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=22.09 E-value=66 Score=28.36 Aligned_cols=53 Identities=19% Similarity=0.447 Sum_probs=31.2
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc-------cCCCcccccccc
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH-------SNARQCEVCKHA 121 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~-------s~~~~CelC~~~ 121 (1123)
+++...| ||....+ ++.++. |.-..+..++|-.|+--=-.. ..+..|+.|+.+
T Consensus 13 ~~~~~~C-iC~~~~~-~g~MI~-CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 13 PEIKVRC-VCGNSLE-TDSMIQ-CEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCCC-SSCCCCC-CSCEEE-CSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCCEEe-ECCCcCC-CCCEEE-ECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 3466788 8987633 334443 431145569999996311111 136899999864
No 118
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=22.06 E-value=75 Score=28.99 Aligned_cols=54 Identities=19% Similarity=0.481 Sum_probs=35.1
Q ss_pred ccCCCcceEecCCCCCCCCcccccccCCccccccHHHHHHHHH--------------ccCCCcccccccceee
Q 001208 66 EEEEEVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLN--------------HSNARQCEVCKHAFSF 124 (1123)
Q Consensus 66 ~~~~~~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~--------------~s~~~~CelC~~~f~~ 124 (1123)
....+.|-||-. .+. .-..||+ -+-+-+|..||.+==. ....++|.-|+.-...
T Consensus 12 ~~~D~~C~VC~~-~t~--~~l~pCR--vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~lL 79 (89)
T 1wil_A 12 VVNDEMCDVCEV-WTA--ESLFPCR--VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLL 79 (89)
T ss_dssp CCCSCCCTTTCC-CCS--SCCSSCS--SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCCSS
T ss_pred CCCCcccCcccc-ccc--cceeccc--cccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhhhh
Confidence 346689999953 222 2346765 3446799999988511 1235899999876655
No 119
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=21.62 E-value=77 Score=36.10 Aligned_cols=42 Identities=21% Similarity=0.539 Sum_probs=30.2
Q ss_pred CCCcccccccCCccccccHHH--HHHHHH---ccCCCcccccccceeecc
Q 001208 82 ENPLRYPCACSGSIKFVHQDC--LLQWLN---HSNARQCEVCKHAFSFSP 126 (1123)
Q Consensus 82 ~~~L~~PC~C~Gsi~~vH~~C--L~~Wl~---~s~~~~CelC~~~f~~~~ 126 (1123)
...+..||+-..| -|-.| +..|+. .++++.||+|+....+..
T Consensus 222 ~~ri~~P~Rg~~C---~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 222 KMRLTIPCRAVTC---THLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp CSBCSSEEEETTC---CCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred cceeccCCcCCCC---CCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 4567889886655 67777 445553 457899999999887654
No 120
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=21.61 E-value=8.8 Score=33.55 Aligned_cols=47 Identities=23% Similarity=0.465 Sum_probs=29.0
Q ss_pred cceEecCCCCCCCCcccccccCCccccccHHHHHHHHHc--cC-CCcccccccc
Q 001208 71 VCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNH--SN-ARQCEVCKHA 121 (1123)
Q Consensus 71 ~CRIC~~~~~~~~~L~~PC~C~Gsi~~vH~~CL~~Wl~~--s~-~~~CelC~~~ 121 (1123)
.|.+|...++ ++.++ .|.+.-+.+|..||.-=+.. ++ ...|+.|..+
T Consensus 20 ~C~~C~~~~~-~~~ll---~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQL---MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSC-GGGEE---ECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCC-CCCEE---EcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 4566665433 23443 26677788999997622221 35 7899999754
No 121
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.07 E-value=14 Score=32.21 Aligned_cols=51 Identities=22% Similarity=0.469 Sum_probs=31.3
Q ss_pred cCCCcceEecCCCCCCCCccc--ccccCCccccccHHHHHHHHHc--cCCCcccccccceee
Q 001208 67 EEEEVCRICRNPGDPENPLRY--PCACSGSIKFVHQDCLLQWLNH--SNARQCEVCKHAFSF 124 (1123)
Q Consensus 67 ~~~~~CRIC~~~~~~~~~L~~--PC~C~Gsi~~vH~~CL~~Wl~~--s~~~~CelC~~~f~~ 124 (1123)
++...| ||+.... +.++. -|.|+ ..++|.+|+- +.. .++.+|+.|...-.-
T Consensus 4 ~~~~yC-~C~~~~~--g~MI~CD~cdC~--~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~~k 58 (70)
T 1x4i_A 4 GSSGYC-ICNQVSY--GEMVGCDNQDCP--IEWFHYGCVG--LTEAPKGKWYCPQCTAAMKR 58 (70)
T ss_dssp SCCCCS-TTSCCCC--SSEECCSCTTCS--CCCEEHHHHT--CSSCCSSCCCCHHHHHHHHH
T ss_pred CCCeEE-EcCCCCC--CCEeEeCCCCCC--ccCCcccccc--cCcCCCCCEECCCCCccccc
Confidence 455677 4876532 24442 23343 3699999986 332 357899999876543
Done!