Your job contains 1 sequence.
>001209
MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH
PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHL
RLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLA
LATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK
PYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA
INLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIK
REKAQARRGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSECVGRLDNGKGTSGRP
HKVPRLSSGATIGAAIVEAENSFETDPQENKEEFKAKLKELLRDKSDAFNSDNPEEDKVK
LGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHY
APFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFY
PTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLS
HPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISPCAGDPHPPVFRSPV
ASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPH
ENGRHNPHGTISGRQLGEAAHRLVANSLQHMKVDRNGYGDRMHGSPLPYAAAPYVPPVPS
YQEYGVYDQGYNRFSQPRTDSYPAGHSQSSISAAQPPYDGGYSQHYASNTSHHPNRRYHP
QYDRNSSGEHPTHLYNPSGIHQNGGPRYPPRPMGSTSSGANLYPPQGGYSGYQSPAAGSF
NQWGGANQSMPRGYGQGQHHQRRDGGYQQYHDQQRNYSHLQGNHQQRGNQGQHQPRGNQG
QYVRDNQHRGNYGHHQQNNQQRNNQFTALDRRPKRPPPGGDGH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001209
(1123 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2005614 - symbol:XRN3 "5'-3' exoribonuclease 3... 3424 0. 2
TAIR|locus:2020073 - symbol:XRN4 "exoribonuclease 4" spec... 1465 5.7e-250 3
UNIPROTKB|F1MKX7 - symbol:XRN2 "Uncharacterized protein" ... 1197 5.3e-188 3
MGI|MGI:894687 - symbol:Xrn2 "5'-3' exoribonuclease 2" sp... 1197 5.4e-186 3
UNIPROTKB|Q5ZIP4 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 1171 2.3e-185 3
ZFIN|ZDB-GENE-040426-2874 - symbol:xrn2 "5'-3' exoribonuc... 1181 3.7e-185 3
UNIPROTKB|Q9H0D6 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 1202 9.7e-185 2
UNIPROTKB|E2RMS9 - symbol:XRN2 "Uncharacterized protein" ... 1209 1.2e-184 2
UNIPROTKB|Q5R4L5 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 1197 2.6e-184 2
UNIPROTKB|F1SAU5 - symbol:XRN2 "Uncharacterized protein" ... 1205 5.3e-184 2
RGD|1310218 - symbol:Xrn2 "5'-3' exoribonuclease 2" speci... 1200 2.9e-183 2
UNIPROTKB|F1PB11 - symbol:XRN2 "Uncharacterized protein" ... 1141 1.9e-177 2
UNIPROTKB|Q60SG7 - symbol:xrn-2 "5'-3' exoribonuclease 2 ... 1651 1.2e-173 2
FB|FBgn0031868 - symbol:Rat1 species:7227 "Drosophila mel... 1075 1.1e-168 3
WB|WBGene00006964 - symbol:xrn-2 species:6239 "Caenorhabd... 1615 1.9e-168 2
UNIPROTKB|Q9U299 - symbol:xrn-2 "5'-3' exoribonuclease 2 ... 1615 1.9e-168 2
POMBASE|SPAC26A3.12c - symbol:dhp1 "5'-3' exoribonuclease... 972 5.2e-167 3
UNIPROTKB|B4DZC3 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 994 9.5e-163 2
SGD|S000005574 - symbol:RAT1 "Nuclear 5' to 3' single-str... 976 1.6e-153 3
CGD|CAL0003816 - symbol:RAT1 species:5476 "Candida albica... 1457 4.0e-151 2
UNIPROTKB|Q5AMG5 - symbol:RAT1 "5'-3' exoribonuclease 2" ... 1457 4.0e-151 2
DICTYBASE|DDB_G0269922 - symbol:xrn2 "CCHC-type zinc fing... 939 2.4e-140 3
POMBASE|SPAC17A5.14 - symbol:exo2 "exonuclease II Exo2" s... 515 8.7e-108 4
MGI|MGI:891964 - symbol:Xrn1 "5'-3' exoribonuclease 1" sp... 506 4.2e-107 5
RGD|1309713 - symbol:Xrn1 "5'-3' exoribonuclease 1" speci... 506 8.8e-107 5
UNIPROTKB|Q8IZH2 - symbol:XRN1 "5'-3' exoribonuclease 1" ... 506 9.9e-106 4
UNIPROTKB|E1C8R7 - symbol:XRN1 "Uncharacterized protein" ... 512 1.2e-105 4
UNIPROTKB|F6XNM6 - symbol:XRN1 "Uncharacterized protein" ... 506 3.3e-105 4
UNIPROTKB|E2R2X2 - symbol:XRN1 "Uncharacterized protein" ... 506 3.6e-105 4
UNIPROTKB|J9PAD8 - symbol:XRN1 "Uncharacterized protein" ... 506 3.6e-105 4
UNIPROTKB|F1SKG4 - symbol:XRN1 "Uncharacterized protein" ... 506 6.7e-105 5
UNIPROTKB|E1BMZ8 - symbol:E1BMZ8 "Uncharacterized protein... 506 1.4e-104 5
ZFIN|ZDB-GENE-040426-1203 - symbol:xrn1 "5'-3' exoribonuc... 512 2.6e-104 5
FB|FBgn0020261 - symbol:pcm "pacman" species:7227 "Drosop... 515 5.8e-101 4
WB|WBGene00012730 - symbol:xrn-1 species:6239 "Caenorhabd... 495 6.7e-101 4
DICTYBASE|DDB_G0276137 - symbol:xrn1 "5'-3' exoribonuclea... 443 2.1e-100 5
SGD|S000003141 - symbol:XRN1 "Evolutionarily-conserved 5'... 494 2.8e-97 5
ASPGD|ASPL0000014026 - symbol:AN11052 species:162425 "Eme... 545 8.1e-95 3
GENEDB_PFALCIPARUM|PF11_0074 - symbol:PF11_0074 "exonucle... 305 2.0e-65 5
UNIPROTKB|Q8IIU0 - symbol:PF11_0074 "Exonuclease, putativ... 305 2.0e-65 5
DICTYBASE|DDB_G0289921 - symbol:DDB_G0289921 species:4468... 288 2.8e-44 2
UNIPROTKB|C9JCZ8 - symbol:XRN1 "5'-3' exoribonuclease 1" ... 274 2.1e-36 2
UNIPROTKB|F8WDA0 - symbol:XRN1 "5'-3' exoribonuclease 1" ... 216 2.3e-22 2
DICTYBASE|DDB_G0272997 - symbol:DDB_G0272997 species:4468... 149 1.8e-06 3
UNIPROTKB|Q4KGS2 - symbol:PFL_1433 "Putative lipoprotein"... 100 0.00048 1
>TAIR|locus:2005614 [details] [associations]
symbol:XRN3 "5'-3' exoribonuclease 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA;IGI;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010587 "miRNA
catabolic process" evidence=IMP] [GO:0006310 "DNA recombination"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0009887 "organ morphogenesis"
evidence=RCA] [GO:0009888 "tissue development" evidence=RCA]
[GO:0010332 "response to gamma radiation" evidence=RCA] [GO:0010638
"positive regulation of organelle organization" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0032204 "regulation of telomere maintenance" evidence=RCA]
[GO:0033044 "regulation of chromosome organization" evidence=RCA]
[GO:0042138 "meiotic DNA double-strand break formation"
evidence=RCA] [GO:0043247 "telomere maintenance in response to DNA
damage" evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF00098 Pfam:PF03159 PIRSF:PIRSF037239
PROSITE:PS50158 SMART:SM00343 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AC006434
GO:GO:0010587 eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOGENOM:HOG000205514 KO:K12619 EMBL:AF286719
EMBL:AY136383 EMBL:BT000175 IPI:IPI00542756 IPI:IPI00903453
PIR:D96786 RefSeq:NP_565114.1 UniGene:At.23685
ProteinModelPortal:Q9FQ03 SMR:Q9FQ03 STRING:Q9FQ03 PaxDb:Q9FQ03
PRIDE:Q9FQ03 EnsemblPlants:AT1G75660.1 GeneID:843900
KEGG:ath:AT1G75660 TAIR:At1g75660 InParanoid:Q9FQ03 OMA:ILREVVY
PhylomeDB:Q9FQ03 Genevestigator:Q9FQ03 Uniprot:Q9FQ03
Length = 1020
Score = 3424 (1210.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 671/1035 (64%), Positives = 768/1035 (74%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVP+FYRWLAEKYPL+VADVIEEEPV I+G+KIPVDTSKPNPN LEYDNLYLDMNGIIH
Sbjct: 1 MGVPSFYRWLAEKYPLLVADVIEEEPVEIEGIKIPVDTSKPNPNNLEYDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXX 120
PCFHPEDRP+PTTF+EVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQ
Sbjct: 61 PCFHPEDRPSPTTFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHL 180
+LPPK DSQVFDSNVITPGTEFM VLSIALQYY+HL
Sbjct: 121 SAKDASDAAAEEERLREEFEREGRRLPPKVDSQVFDSNVITPGTEFMGVLSIALQYYVHL 180
Query: 181 RLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLA 240
RLN+D GW+ IKVILSDANVPGEGEHKIMSY+RLQRNLPG+DPNTRHCLYGLDADLIML
Sbjct: 181 RLNHDVGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLG 240
Query: 241 LATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK 300
LATHEVHFSILREVV+TPGQQ++CFLCGQ GH A+NCEGK K++AGE DEKGD KK
Sbjct: 241 LATHEVHFSILREVVYTPGQQERCFLCGQMGHFASNCEGKPKKRAGESDEKGDGNDFVKK 300
Query: 301 PYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA 360
PYQFLHIW LREYL+ E RIPNPPFEIDLE IVDDFIF+CFFVGNDFLPHMPTLEIREGA
Sbjct: 301 PYQFLHIWVLREYLELEMRIPNPPFEIDLERIVDDFIFICFFVGNDFLPHMPTLEIREGA 360
Query: 361 INLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIK 420
INLLMAVYKKEFR+ GYLTDG KP+L+RVE FIQAVGS+ED+IFQKRA HQR AER+K
Sbjct: 361 INLLMAVYKKEFRSFDGYLTDGCKPNLKRVEQFIQAVGSFEDKIFQKRAMQHQRQAERVK 420
Query: 421 REKA--QARRGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSECVGRLDNGKGTSG 478
R+KA +R DD P QPD LVPV+RF GSRLAS P+PSP+Q ++ GR
Sbjct: 421 RDKAGKATKRMDDEAPTVQPD-LVPVARFSGSRLASAPTPSPFQSND--GR--------S 469
Query: 479 RPH-KVPRLSSGATIGAAIVEAENSFETDPQXXXXXXXXXXXXXXRDKSDAFNSDNPEED 537
PH KV RLS G+++GAAIV+ ENS E+D + R+KSDAFNSD EED
Sbjct: 470 APHQKVRRLSPGSSVGAAIVDVENSLESDERENKEELKTKLKELIREKSDAFNSDTTEED 529
Query: 538 KVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYP 597
KVKLG+PGW+ERYYEEKF+ TPEE E RKDVVL+YTEGLCWVMHYY EGVCSWQWFYP
Sbjct: 530 KVKLGQPGWRERYYEEKFSVVTPEEMERVRKDVVLKYTEGLCWVMHYYMEGVCSWQWFYP 589
Query: 598 YHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPIS 657
YHYAPFASDLKDL + +I FELG PFKPFNQLLGVFP+ASSHALPE YR LMTDPNSPI
Sbjct: 590 YHYAPFASDLKDLGEMDIKFELGTPFKPFNQLLGVFPAASSHALPERYRTLMTDPNSPII 649
Query: 658 DFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFV 717
DFYPTDFEVDMNGKR+SWQGIAKLPFIDE RLL+ V ++E TLT+EE RRNS M DMLF+
Sbjct: 650 DFYPTDFEVDMNGKRFSWQGIAKLPFIDERRLLEAVSEVEFTLTDEEKRRNSRMCDMLFI 709
Query: 718 LLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISPCAGDPHPPVFR 777
SH L+ +++LD HC+QL +ERV+ K ++ P+LS DGMNGY++PC+G+ HPPVFR
Sbjct: 710 ATSHRLAELVFSLDNHCRQLSARERVDFKVKIKPKLS---DGMNGYLTPCSGETHPPVFR 766
Query: 778 SPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGR 837
SP+ MEDI+ NQV+C IY+LPDAH+H+TRPP GVIFPKK V + DLKP P LWHED+GR
Sbjct: 767 SPMEGMEDILTNQVICCIYRLPDAHEHITRPPPGVIFPKKTVDIGDLKPPPALWHEDNGR 826
Query: 838 RP-HEN-------------GRHNPHGTISGRQLGEAAHRLVANSLQHMKVDRNGYGDRMH 883
RP H N GR NP G++SGR LG AAHRLV+NSLQ M DR Y
Sbjct: 827 RPMHNNHGMHNNHGMHNNQGRQNPPGSVSGRHLGNAAHRLVSNSLQ-MGTDR--YQTPTD 883
Query: 884 GXXXXXXXXXXXXXXXXXQEYGVY--DQGYNRFSQPRTDSYPAGHSQSSISAAQP--PY- 938
++G Y G ++QP G+ S P PY
Sbjct: 884 VPAPGYGYNPPQYVPPIPYQHGGYMAPPGAQGYAQPAPYQNRGGYQPRGPSGRFPSEPYQ 943
Query: 939 ----DGGYSQHYASNTSHHPNRRYHPQYD-RNSSGEHPTHLYNPSGIHQNGGPRYPPRPM 993
+G ++ + +H N+ Q+ + S ++ YN HQ GG + R
Sbjct: 944 SQSREGQHASRGGGYSGNHQNQHQQQQWHGQGGSEQNNPRGYNGQHHHQQGGD-HDRRGR 1002
Query: 994 GSTSSGANLYPPQGG 1008
G G++ + QGG
Sbjct: 1003 GR---GSHHHHDQGG 1014
Score = 61 (26.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 21/62 (33%), Positives = 25/62 (40%)
Query: 975 YNPSGIHQNGGP--RYPPRPMGSTSSGANLYPPQGGYSGYQSPAAGSFNQW---GGANQS 1029
Y G +Q GP R+P P S S GGYSG QW GG+ Q+
Sbjct: 922 YQNRGGYQPRGPSGRFPSEPYQSQSREGQHASRGGGYSGNHQNQHQQ-QQWHGQGGSEQN 980
Query: 1030 MP 1031
P
Sbjct: 981 NP 982
Score = 44 (20.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 941 GYS-QHYASNTSHHPNR-RYHPQYDRNSSGEHPTHLY 975
GY+ QH+ H R R + + G +P H Y
Sbjct: 984 GYNGQHHHQQGGDHDRRGRGRGSHHHHDQGGNPRHRY 1020
>TAIR|locus:2020073 [details] [associations]
symbol:XRN4 "exoribonuclease 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=IEA;IGI;IMP] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0009630 "gravitropism" evidence=RCA;IMP]
[GO:0009723 "response to ethylene stimulus" evidence=IMP]
[GO:0009873 "ethylene mediated signaling pathway" evidence=IGI;IMP]
[GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid"
evidence=IMP] [GO:0009826 "unidimensional cell growth"
evidence=IMP] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=IMP] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=IMP] [GO:0010587 "miRNA catabolic process"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000003
"reproduction" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006325 "chromatin organization" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006487
"protein N-linked glycosylation" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0007267 "cell-cell signaling"
evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0009616 "virus induced gene
silencing" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
evidence=RCA] [GO:0010638 "positive regulation of organelle
organization" evidence=RCA] [GO:0016049 "cell growth" evidence=RCA]
[GO:0033044 "regulation of chromosome organization" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0048589 "developmental growth"
evidence=RCA] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF00098 Pfam:PF03159 PIRSF:PIRSF037239
PROSITE:PS50158 SMART:SM00343 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0009873
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003676
EMBL:AC005287 GO:GO:0009826 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0040029 GO:GO:0031087 GO:GO:0000291 GO:GO:0010587
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 KO:K12619 EMBL:AF286718 EMBL:AY064012
EMBL:AY091411 IPI:IPI00520526 PIR:G96586 RefSeq:NP_175851.1
UniGene:At.16935 ProteinModelPortal:Q9FQ04 SMR:Q9FQ04 STRING:Q9FQ04
PaxDb:Q9FQ04 PRIDE:Q9FQ04 EnsemblPlants:AT1G54490.1 GeneID:841891
KEGG:ath:AT1G54490 TAIR:At1g54490 InParanoid:Q9FQ04 OMA:SWEWYFP
PhylomeDB:Q9FQ04 ProtClustDB:CLSN2682416 Genevestigator:Q9FQ04
Uniprot:Q9FQ04
Length = 947
Score = 1465 (520.8 bits), Expect = 5.7e-250, Sum P(3) = 5.7e-250
Identities = 276/437 (63%), Positives = 328/437 (75%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVK---IPVDTSKPNPNGLEYDNLYLDMNG 57
MGVPAFYRWLA++YP ++DV+EEEP DG + IPVD ++PNPNG E+DNLYLDMNG
Sbjct: 1 MGVPAFYRWLADRYPKSISDVVEEEPT--DGGRGDLIPVDITRPNPNGFEFDNLYLDMNG 58
Query: 58 IIHPCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXX 117
IIHPCFHPE +PAP T+D+VF+ MF+YID LF +VRPRK+LY+AIDGVAPRAKMNQQ
Sbjct: 59 IIHPCFHPEGKPAPATYDDVFKSMFEYIDHLFTLVRPRKILYLAIDGVAPRAKMNQQRSR 118
Query: 118 XXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYY 177
L K ++ DSNVITPGT FMA+LS+ALQYY
Sbjct: 119 RFRAAKDAAEAEAEEERLRKDFEMEGQILSAKEKAETCDSNVITPGTPFMAILSVALQYY 178
Query: 178 IHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLI 237
I RLN++PGW +KVILSD+NVPGEGEHKIMSY+RLQRNLPG+DPNTRHCLYGLDADLI
Sbjct: 179 IQSRLNHNPGWRYVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLI 238
Query: 238 MLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVV 297
ML+LATHEVHFSILREV+ PGQQ+KCF+CGQ GH A++C GK+ G + D + +
Sbjct: 239 MLSLATHEVHFSILREVITYPGQQEKCFVCGQTGHFASDCPGKS----GSNNAAAD-IPI 293
Query: 298 PKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIR 357
KK YQFL+IW LREYL YE IP+PPF I+ E I+DDF+F+CFFVGNDFLPHMPTLEIR
Sbjct: 294 HKKKYQFLNIWVLREYLQYELAIPDPPFMINFERIIDDFVFLCFFVGNDFLPHMPTLEIR 353
Query: 358 EGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAE 417
EGAINLLM VY+KEF A+GGYLTD + L RVEHFIQAV ED+IFQKR R+ Q
Sbjct: 354 EGAINLLMHVYRKEFTAMGGYLTDSGEVLLDRVEHFIQAVAVNEDKIFQKRTRIKQSMDN 413
Query: 418 RIKREKAQARRGDDVEP 434
+ ++ R +V P
Sbjct: 414 NEEMKQRSRRDPSEVPP 430
Score = 927 (331.4 bits), Expect = 5.7e-250, Sum P(3) = 5.7e-250
Identities = 187/366 (51%), Positives = 236/366 (64%)
Query: 523 RDKSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 582
RD S+ P +DK+KLGEPG+KERYY EKF+ PEE E+ ++D+VL+Y EGLCWV
Sbjct: 423 RDPSEV--PPEPIDDKIKLGEPGYKERYYAEKFSTTNPEETEQIKQDMVLKYVEGLCWVC 480
Query: 583 HYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALP 642
YYY+GVCSWQWFYPYHYAPFASDLK+L I+F +G PFKPF+QL+G P+ASS+ALP
Sbjct: 481 RYYYQGVCSWQWFYPYHYAPFASDLKNLPDLEITFFIGEPFKPFDQLMGTLPAASSNALP 540
Query: 643 EHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTE 702
YRKLMTDP+SPI FYP DFE+DMNGKR++WQGIAKLPFI+E LL +K+E TLT
Sbjct: 541 GEYRKLMTDPSSPILKFYPADFELDMNGKRFAWQGIAKLPFIEEKLLLAATRKLEETLTV 600
Query: 703 EEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNG 762
EE +RNS+M D+L+V +HPL I + + E + ++P S GMNG
Sbjct: 601 EEQQRNSVMLDLLYVHPAHPLGQRILQYYHFYQHMPPHECLPWM--IDPN---SSQGMNG 655
Query: 763 YISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLE 822
++ + SPV + I N+ L Y P H H++ PP G I P KI+
Sbjct: 656 FLWFSERNGFQTRVDSPVNGLPCIEQNRALNVTYLCPAKHSHISEPPRGAIIPDKILTSV 715
Query: 823 DLKPAPVLWHED-SGRRPHENGRHNPHGTISGRQLGEAAHRLVANSLQHMK--------- 872
D+KP P LWHED S RR R G I+G LGEAAHRL+ N+L +MK
Sbjct: 716 DIKPFPPLWHEDNSNRRRQARDRPQVVGAIAGPSLGEAAHRLIKNTL-NMKSSTGAASGL 774
Query: 873 VDRNGY 878
+D NGY
Sbjct: 775 IDPNGY 780
Score = 56 (24.8 bits), Expect = 5.7e-250, Sum P(3) = 5.7e-250
Identities = 25/83 (30%), Positives = 33/83 (39%)
Query: 928 QSSISAAQPPYD-GGYSQHYASNTSHHPNRR--------YHPQYDRNSSGEHPTHLYNPS 978
+SS AA D GY ++ N S+ R Y YD +SS + + +
Sbjct: 765 KSSTGAASGLIDPNGYYRNVPGNYSYGGVNRPRAPGPSPYRKAYDDDSSYYYGKYNNSTQ 824
Query: 979 GIHQNGGPRYPPRPMGSTSSGAN 1001
G NG PRYP GS N
Sbjct: 825 GTFNNG-PRYPYPSNGSQDYNRN 846
Score = 41 (19.5 bits), Expect = 3.5e-152, Sum P(2) = 3.5e-152
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 447 FHGSRLASGPSPSPYQQ------SECVGRLDNG-KGTSGRPHKVPRLSSGA 490
+ G P PSPY++ S G+ +N +GT + P S+G+
Sbjct: 790 YGGVNRPRAPGPSPYRKAYDDDSSYYYGKYNNSTQGTFNNGPRYPYPSNGS 840
Score = 38 (18.4 bits), Expect = 4.6e-248, Sum P(3) = 4.6e-248
Identities = 17/56 (30%), Positives = 21/56 (37%)
Query: 971 PTHLY-NPSGIHQNGG---PRYP-PRPMGSTSSGANLYPPQGGYSGYQSPAAGSFN 1021
P Y N G + GG PR P P P + Y Y Y + G+FN
Sbjct: 777 PNGYYRNVPGNYSYGGVNRPRAPGPSPYRKAYDDDSSYY----YGKYNNSTQGTFN 828
>UNIPROTKB|F1MKX7 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016235 "aggresome" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016070
GO:GO:0000738 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 OMA:RKRMKRD
EMBL:DAAA02035814 EMBL:DAAA02035815 IPI:IPI00699133
RefSeq:NP_001179401.1 UniGene:Bt.8587 Ensembl:ENSBTAT00000015019
GeneID:517417 KEGG:bta:517417 NextBio:20872434 Uniprot:F1MKX7
Length = 951
Score = 1197 (426.4 bits), Expect = 5.3e-188, Sum P(3) = 5.3e-188
Identities = 241/484 (49%), Positives = 308/484 (63%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPAF+RWL+ KYP ++ + +EE+P +GVKIPVD SKPNPN +E+DNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXX 120
PC HPED+PAP DE+ +F+YIDRLF +VRPR+LLYMAIDGVAPRAKMNQQ
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHL 180
LPP+ + FDSN ITPGTEFM L+ L+YYI
Sbjct: 121 ASKEGMEAEIEKQRVREEILAKGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 181 RLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLA 240
RLNNDPGW+ + VILSDA+ PGEGEHKIM Y+R QR P +DPNT HCL G DADLIML
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 241 LATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK 300
LATHE +F+I+RE F P + C LC Q GH +CEG + K G+ DE D + +
Sbjct: 241 LATHEPNFTIIREE-FKPNKPKPCGLCNQFGHDVKDCEGLPREKKGKHDELADSLPCAEG 299
Query: 301 PYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA 360
+ F+ + LREYL+ E + + PF D+E +DD++FMCFFVGNDFLPH+P+LEIREGA
Sbjct: 300 EFIFIRLSVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGA 359
Query: 361 INLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIK 420
I+ L+ +YK GGYLT+ +L+RV+ + AVG ED IF+KR R K
Sbjct: 360 IDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQK 419
Query: 421 REKAQARRGD-DVEP--LAQPDSLVPVSRFHGSRLASGPSPSPYQQSECVGRLDNGKGTS 477
++ + +R P + P +L S GS++AS P + Y+ R+ N S
Sbjct: 420 EKRKRMKRDQPSFSPGGILTPHALGSRSS-PGSQVASNPRQAAYEM-----RMQNNLSPS 473
Query: 478 GRPH 481
P+
Sbjct: 474 VSPN 477
Score = 612 (220.5 bits), Expect = 5.3e-188, Sum P(3) = 5.3e-188
Identities = 137/317 (43%), Positives = 186/317 (58%)
Query: 525 KSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHY 584
K+D +S+ ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+ Y
Sbjct: 495 KADDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVLRY 552
Query: 585 YYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHALPE 643
YY+G SW+W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + LP
Sbjct: 553 YYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPP 612
Query: 644 HYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEE 703
+RKLM+DP+S I DFYP DF +D+NGKRY+WQG+A LPF+DE RL ++++ LT E
Sbjct: 613 SWRKLMSDPDSSIIDFYPEDFAIDLNGKRYAWQGVALLPFVDERRLRAALEEVYPDLTPE 672
Query: 704 EARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGY 763
E RRNS+ D+LFV HPL I L + E V+V PEL C G+ G
Sbjct: 673 ETRRNSLGGDVLFVGKHHPLHDFILEL----YKTGSTESVDVP----PEL--CH-GIQGK 721
Query: 764 ISPCAGDPHP-PVFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKIVQL 821
S P V SP+ ++D+ N V+ +K P A ++ + V+ P
Sbjct: 722 FSLDEEAVLPNQVVCSPIPVLKDLTHNAVISINFKDPQFAEDYIFK---AVMLPGARKPA 778
Query: 822 EDLKPAPVLWHEDSGRR 838
LKP+ W + S R
Sbjct: 779 PVLKPSD--WEKSSNGR 793
Score = 52 (23.4 bits), Expect = 5.3e-188, Sum P(3) = 5.3e-188
Identities = 16/56 (28%), Positives = 22/56 (39%)
Query: 956 RRYHPQYDRNSSGEHPTHLYNPSGIHQNGGPRYPPRPMGSTSSGANLYPPQGGYSG 1011
R++ PQ N P HL +P+ G PR T +N PP + G
Sbjct: 793 RQWKPQLGFNRD-RRPVHL-DPAAFRALG--HVMPRGSSGTGVYSNAAPPPAAFQG 844
>MGI|MGI:894687 [details] [associations]
symbol:Xrn2 "5'-3' exoribonuclease 2" species:10090 "Mus
musculus" [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006281 "DNA repair" evidence=NAS]
[GO:0006310 "DNA recombination" evidence=NAS] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006353
"DNA-dependent transcription, termination" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007017 "microtubule-based process" evidence=TAS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008409 "5'-3' exonuclease
activity" evidence=ISO] [GO:0016049 "cell growth" evidence=IGI]
[GO:0016070 "RNA metabolic process" evidence=IGI] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Reactome:REACT_93132 InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 MGI:MGI:894687
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0016049
GO:GO:0008270 GO:GO:0006281 GO:GO:0006397 GO:GO:0007283
GO:GO:0003676 GO:GO:0006310 GO:GO:0016070 GO:GO:0007017
GO:GO:0000738 GO:GO:0006353 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 HOGENOM:HOG000205514
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 HOVERGEN:HBG036677
OMA:RKRMKRD OrthoDB:EOG4M0F0Z ChiTaRS:XRN2 EMBL:D38517
EMBL:AK004800 EMBL:AK031247 EMBL:AK053643 EMBL:AK133654
EMBL:AK167019 EMBL:AK168037 EMBL:BC004028 EMBL:BC054743
IPI:IPI00120046 IPI:IPI00283057 PIR:I49635 RefSeq:NP_036047.2
UniGene:Mm.3065 ProteinModelPortal:Q9DBR1 SMR:Q9DBR1 IntAct:Q9DBR1
STRING:Q9DBR1 PhosphoSite:Q9DBR1 PaxDb:Q9DBR1 PRIDE:Q9DBR1
Ensembl:ENSMUST00000028921 GeneID:24128 KEGG:mmu:24128
UCSC:uc008msq.1 InParanoid:Q9DBR1 NextBio:304163 Bgee:Q9DBR1
CleanEx:MM_XRN2 Genevestigator:Q9DBR1 GermOnline:ENSMUSG00000027433
Uniprot:Q9DBR1
Length = 951
Score = 1197 (426.4 bits), Expect = 5.4e-186, Sum P(3) = 5.4e-186
Identities = 249/514 (48%), Positives = 324/514 (63%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPAF+RWL+ KYP ++ + +EE+P +GVKIPVD SKPNPN +E+DNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXX 120
PC HPED+PAP DE+ +F+YIDRLF +VRPR+LLYMAIDGVAPRAKMNQQ
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHL 180
LPP+ + FDSN ITPGTEFM L+ L+YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 181 RLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLA 240
RLNNDPGW+ + VILSDA+ PGEGEHKIM Y+R QR P +DPNT HCL G DADLIML
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 241 LATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK 300
LATHE +F+I+RE F P + C LC Q GH +CEG + K G+ DE D + +
Sbjct: 241 LATHEPNFTIIREE-FKPNKPKPCALCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEG 299
Query: 301 PYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA 360
+ FL + LREYL+ E + + PF D+E +DD++FMCFFVGNDFLPH+P+LEIREGA
Sbjct: 300 EFIFLRLNVLREYLERELTMASLPFPFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGA 359
Query: 361 INLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIK 420
I+ L+ +YK GGYLT+ +L+RV+ + AVG ED IF+KR + + R +
Sbjct: 360 IDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKR-KDDEDSFRRRQ 418
Query: 421 REKAQARRGDDVEPLAQPDS-LVPV---SRFH-GSRLASGPSPSPYQQSECVGRLDNGKG 475
+EK + + D +P P L P SR G ++AS P + Y+ R+
Sbjct: 419 KEKRKRMKRD--QPAFTPSGILTPHALGSRNSPGCQVASNPRQAAYEM-----RMQRNSS 471
Query: 476 TSGRPH-KVPRLSSGATIGAAIVEAENSFETDPQ 508
S P+ S + +G +AE+S +++P+
Sbjct: 472 PSISPNTSFASDGSPSPLGGIKRKAEDS-DSEPE 504
Score = 598 (215.6 bits), Expect = 5.4e-186, Sum P(3) = 5.4e-186
Identities = 141/320 (44%), Positives = 186/320 (58%)
Query: 525 KSDAFNSDN-PE-EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 582
K A +SD+ PE ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+
Sbjct: 493 KRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVL 550
Query: 583 HYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHAL 641
YYY+G SW+W+YP+HYAPFASD + + + FE G PFKP QL+GVFP+AS + L
Sbjct: 551 RYYYQGCASWKWYYPFHYAPFASDFEGIADMSSEFEKGTKPFKPLEQLMGVFPAASGNFL 610
Query: 642 PEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLT 701
P +RKLM+DP+S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT
Sbjct: 611 PPTWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLT 670
Query: 702 EEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMN 761
EE RRNS+ D+LFV HPL I L Q E V+V PEL C G+
Sbjct: 671 PEENRRNSLGGDVLFVGKLHPLRDFILEL----YQTGSTEPVDVP----PEL--CH-GIQ 719
Query: 762 GYIS--PCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKI 818
G S A P V SPV + D+ N + +K P A +V + + P
Sbjct: 720 GTFSLDEEAILPDQTVC-SPVPMLRDLTQNTAVSINFKDPQFAEDYVFK---AAMLPGAR 775
Query: 819 VQLEDLKPAPVLWHEDSGRR 838
LKP W + S R
Sbjct: 776 KPATVLKPGD--WEKSSNGR 793
Score = 47 (21.6 bits), Expect = 5.4e-186, Sum P(3) = 5.4e-186
Identities = 15/50 (30%), Positives = 18/50 (36%)
Query: 975 YNPSGIHQNGGPR-YPPRPMGSTSSGANLYPPQGGYSGYQSPAAGSFNQW 1023
+ P+ GGP YPPR G YP +G Y P W
Sbjct: 904 FQPNQYQMLGGPGGYPPR-RDDHRGGRQGYPREG--RKYPLPPPSGRYSW 950
>UNIPROTKB|Q5ZIP4 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006353
"DNA-dependent transcription, termination" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0016049 "cell
growth" evidence=IEA] [GO:0016235 "aggresome" evidence=IEA]
[GO:0000738 "DNA catabolic process, exonucleolytic" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0016049 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 GO:GO:0008409 GO:GO:0000738
GO:GO:0006353 eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOGENOM:HOG000205514 GeneTree:ENSGT00670000098098
KO:K12619 EMBL:AJ720740 IPI:IPI00598321 RefSeq:NP_001026204.1
UniGene:Gga.8002 STRING:Q5ZIP4 PRIDE:Q5ZIP4
Ensembl:ENSGALT00000013637 GeneID:421236 KEGG:gga:421236 CTD:22803
HOVERGEN:HBG036677 InParanoid:Q5ZIP4 OMA:RKRMKRD OrthoDB:EOG4M0F0Z
NextBio:20824031 Uniprot:Q5ZIP4
Length = 949
Score = 1171 (417.3 bits), Expect = 2.3e-185, Sum P(3) = 2.3e-185
Identities = 231/458 (50%), Positives = 294/458 (64%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPAF+RWL+ KYP ++ + +EE+ +GVK VDTSKPNPN +E+DNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKAKECNGVKASVDTSKPNPNEVEFDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXX 120
PC HPED+PAP DE+ +F+YIDR+F +VRPR+LLYMAIDGVAPRAKMNQQ
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHL 180
LPP+ + FDSN ITPGTEFM L+ L+YYI
Sbjct: 121 ASKEGMEAAEEKQKIRQEILAKGGILPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 181 RLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLA 240
RLN+DPGW+ + VILSDA+ PGEGEHKIM Y+R QR P +DPNT HCL G DADLIML
Sbjct: 181 RLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 241 LATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK 300
LATHE HF+I+RE F P + C LC Q GH +C+G + K G+ D+ D + ++
Sbjct: 241 LATHEPHFTIIREE-FKPNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADSLPASEQ 299
Query: 301 PYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA 360
+ F+ + LREYL+ E + + PF D E VDD++FMCFFVGNDFLPH+P+LEIREGA
Sbjct: 300 EFIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGA 359
Query: 361 INLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIK 420
I+ L+ +YK GGYLT+ +L+RV+ + AVG ED IF+KR R K
Sbjct: 360 IDRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQK 419
Query: 421 REKAQARRGDDVEPLAQPDSLVPVSRFHGSRLASGPSP 458
+K + +R P S +P +F L + SP
Sbjct: 420 EKKKRMKRD-------HP-SFIPGGQFSPQALGNRSSP 449
Score = 608 (219.1 bits), Expect = 2.3e-185, Sum P(3) = 2.3e-185
Identities = 126/277 (45%), Positives = 168/277 (60%)
Query: 525 KSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHY 584
KS+ +S+ ED ++L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+ Y
Sbjct: 494 KSEDSDSEPEPEDNIRLWESGWKQRYYKNKFDVDASDEK--FRRKVVQSYVEGLCWVLRY 551
Query: 585 YYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGH-PFKPFNQLLGVFPSASSHALPE 643
YY+G SW W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + LP
Sbjct: 552 YYQGCASWNWYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMGVFPAASGNFLPP 611
Query: 644 HYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEE 703
+RKLMTDP S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT E
Sbjct: 612 TWRKLMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPE 671
Query: 704 EARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGY 763
E RRNS+ D+LFV HPL I +Q K K V + PEL C G+ G
Sbjct: 672 ENRRNSLGGDVLFVGKHHPLCDFIV------EQYKSKNTEPVD--MPPEL--CY-GIQGK 720
Query: 764 ISPCAGDPHPP-VFRSPVASMEDIMGNQVLCAIYKLP 799
++P P SPV + D+ N + +K P
Sbjct: 721 LTPNENAVLPDKTVESPVPMLRDLTQNSAVSISFKDP 757
Score = 57 (25.1 bits), Expect = 2.3e-185, Sum P(3) = 2.3e-185
Identities = 18/55 (32%), Positives = 22/55 (40%)
Query: 971 PTHLYNPSGIHQN-GGPR-YPPRPMGSTSSGANLYPPQGGYSGYQSPAAGSFNQW 1023
P P G +Q GGP YP RP G Y P Y P +G ++ W
Sbjct: 897 PAQSQYPPGQYQGLGGPMSYPQRPEDRMDRGRQAYGPGRPY--LLPPPSGRYS-W 948
>ZFIN|ZDB-GENE-040426-2874 [details] [associations]
symbol:xrn2 "5'-3' exoribonuclease 2" species:7955
"Danio rerio" [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 SMART:SM00343 ZFIN:ZDB-GENE-040426-2874
GO:GO:0005634 GO:GO:0008270 GO:GO:0003676 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 HOGENOM:HOG000205514
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 HOVERGEN:HBG036677
OMA:RKRMKRD OrthoDB:EOG4M0F0Z EMBL:BX005124 EMBL:CT573061
IPI:IPI00835014 RefSeq:NP_001001944.2 UniGene:Dr.10637
Ensembl:ENSDART00000100246 GeneID:321940 KEGG:dre:321940
NextBio:20807592 Uniprot:A5WVY7
Length = 952
Score = 1181 (420.8 bits), Expect = 3.7e-185, Sum P(3) = 3.7e-185
Identities = 231/431 (53%), Positives = 286/431 (66%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPAF+RWL+ KYP ++ +EE+ +GVKIPVDTSKPNPN +E+DNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVHCLEEKAKEYNGVKIPVDTSKPNPNEVEFDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXX 120
PC HPED+PAP DE+ +F+YIDRLF +VRPR++LYMAIDGVAPRAKMNQQ
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHL 180
LPP+ + FDSN ITPGTEFM L+ L+YY+
Sbjct: 121 ASKEGVELAEEKQKMREEVIERGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYVAD 180
Query: 181 RLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLA 240
RL NDPGW I V LSDA+VPGEGEHKIM Y+R QR P +DPNT HCL G DADLIML
Sbjct: 181 RLTNDPGWRNITVFLSDASVPGEGEHKIMDYIRRQRGQPNHDPNTHHCLCGADADLIMLG 240
Query: 241 LATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK 300
LATHE +F+I+RE F P + C LC Q GH +C+G + K GE DE D + V ++
Sbjct: 241 LATHEPNFTIIREE-FKPNKPRPCALCSQMGHEIKDCQGLPREKQGEHDEFADTIPVSEQ 299
Query: 301 PYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA 360
+ F+ + LREYL+ E + + PF E VDD++FMCFFVGNDFLPH+P+LEIREGA
Sbjct: 300 EFIFIRLAVLREYLERELTMASLPFPFSFERSVDDWVFMCFFVGNDFLPHLPSLEIREGA 359
Query: 361 INLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRAR----LHQRHA 416
I+ L+ +YK GGYLT+ +L RVE +QAVG ED IF+KR +R
Sbjct: 360 IDRLVGIYKDVVHKTGGYLTENGFVNLERVELIMQAVGVAEDNIFKKRKEDDESFKRRMK 419
Query: 417 ERIKREKAQAR 427
++ KR KA+ R
Sbjct: 420 DKKKRMKAEQR 430
Score = 604 (217.7 bits), Expect = 3.7e-185, Sum P(3) = 3.7e-185
Identities = 135/319 (42%), Positives = 183/319 (57%)
Query: 525 KSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHY 584
K+D +S+ ED V+L E GWK+RYY+ KF+ ++ E RK VV Y EGLCWV+ Y
Sbjct: 503 KADDSDSEPEPEDNVRLWEDGWKQRYYKTKFDVDATDD--EFRKKVVQSYVEGLCWVLRY 560
Query: 585 YYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHALPE 643
YY+G SW+W++P+HYAPFASD KD+ FE G PFKP QL+GVFP+AS + LP
Sbjct: 561 YYQGCASWKWYFPFHYAPFASDFKDIKGMFSDFEKGTKPFKPLEQLMGVFPAASGNFLPT 620
Query: 644 HYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEE 703
+R LM+DP S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL + ++ + LT E
Sbjct: 621 TWRALMSDPESSIIDFYPDDFAIDLNGKKYAWQGVALLPFVDERRLRAALAEVYNDLTPE 680
Query: 704 EARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGY 763
E RRNS+ +D++FV SH L C ++ R E C G+ G
Sbjct: 681 EVRRNSLGSDVMFVGRSHAL----------CDFIQELYRAESHTATEIPAEFCH-GIQGI 729
Query: 764 ISPCAGDPHPP--VFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKIVQ 820
++ DP P + SP+ + DI N + +K P A V + VI P +
Sbjct: 730 LN-LDEDPILPDKLVESPIPVLRDISSNCAIGIKFKDPQYADGFVFK---AVILPGAKIP 785
Query: 821 LEDLKPAPVLWHEDSGRRP 839
+ LKP W E S R P
Sbjct: 786 NKVLKPGD--W-EQSNRGP 801
Score = 49 (22.3 bits), Expect = 3.7e-185, Sum P(3) = 3.7e-185
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 977 PSGIHQNGGPRYPPRPMGSTSSGANLYPPQGG-YSGYQS 1014
PS H+ GG Y P + N PPQ YS QS
Sbjct: 843 PSDAHRRGGA-YSSAPPPTNYHQGNYRPPQRDHYSQSQS 880
Score = 41 (19.5 bits), Expect = 3.5e-122, Sum P(2) = 3.5e-122
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 448 HGSRLASGPSPSPYQQSECVGRLD-----NGKG-TSGRPHKVPRLS 487
HG A S YQQ++ GR D N +G SGR + +P S
Sbjct: 901 HGWDRAMQNQGSSYQQNQQRGRGDWRPQQNQQGFNSGRGYGLPPAS 946
>UNIPROTKB|Q9H0D6 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006353
"DNA-dependent transcription, termination" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IDA] [GO:0016070 "RNA metabolic
process" evidence=ISS] [GO:0016049 "cell growth" evidence=ISS]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=TAS]
[GO:0007283 "spermatogenesis" evidence=IEP] [GO:0004518 "nuclease
activity" evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006401 "RNA catabolic process" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0016235 "aggresome" evidence=IDA]
Reactome:REACT_17015 InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158
SMART:SM00343 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0016049 GO:GO:0008270 GO:GO:0006397 GO:GO:0007283
GO:GO:0003676 GO:GO:0006401 GO:GO:0006396 GO:GO:0016235
GO:GO:0000738 GO:GO:0006353 EMBL:AL158013 eggNOG:COG5049
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534 KO:K12619
CTD:22803 HOVERGEN:HBG036677 OMA:RKRMKRD OrthoDB:EOG4M0F0Z
EMBL:AF064257 EMBL:AF152169 EMBL:AY382900 EMBL:AL136841
EMBL:AL117332 EMBL:AK000084 EMBL:BC006417 IPI:IPI00100151
IPI:IPI00788157 RefSeq:NP_036387.2 UniGene:Hs.255932
ProteinModelPortal:Q9H0D6 SMR:Q9H0D6 IntAct:Q9H0D6
MINT:MINT-3065664 STRING:Q9H0D6 PhosphoSite:Q9H0D6 DMDM:30173484
SWISS-2DPAGE:Q9H0D6 PaxDb:Q9H0D6 PeptideAtlas:Q9H0D6 PRIDE:Q9H0D6
DNASU:22803 Ensembl:ENST00000377191 Ensembl:ENST00000430571
GeneID:22803 KEGG:hsa:22803 UCSC:uc002wsf.1 GeneCards:GC20P021283
HGNC:HGNC:12836 HPA:HPA047118 MIM:608851 neXtProt:NX_Q9H0D6
PharmGKB:PA37427 InParanoid:Q9H0D6 PhylomeDB:Q9H0D6 ChiTaRS:XRN2
GenomeRNAi:22803 NextBio:43160 PMAP-CutDB:Q9H0D6
ArrayExpress:Q9H0D6 Bgee:Q9H0D6 CleanEx:HS_XRN2
Genevestigator:Q9H0D6 GermOnline:ENSG00000088930 Uniprot:Q9H0D6
Length = 950
Score = 1202 (428.2 bits), Expect = 9.7e-185, Sum P(2) = 9.7e-185
Identities = 250/514 (48%), Positives = 325/514 (63%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPAF+RWL+ KYP ++ + +EE+P +GVKIPVD SKPNPN +E+DNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXX 120
PC HPED+PAP DE+ +F+YIDRLF +VRPR+LLYMAIDGVAPRAKMNQQ
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHL 180
LPP+ + FDSN ITPGTEFM L+ L+YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 181 RLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLA 240
RLNNDPGW+ + VILSDA+ PGEGEHKIM Y+R QR P +DPNT HCL G DADLIML
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 241 LATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK 300
LATHE +F+I+RE F P + C LC Q GH +CEG + K G+ DE D + +
Sbjct: 241 LATHEPNFTIIREE-FKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEG 299
Query: 301 PYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA 360
+ FL + LREYL+ E + + PF D+E +DD++FMCFFVGNDFLPH+P+LEIRE A
Sbjct: 300 EFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENA 359
Query: 361 INLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIK 420
I+ L+ +YK GGYLT+ +L+RV+ + AVG ED IF+KR + + R +
Sbjct: 360 IDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKR-KDDEDSFRRRQ 418
Query: 421 REKAQARRGDDVEPLAQPDS-LVPV---SRFH-GSRLASGPSPSPYQQSECVGRLDNGKG 475
+EK + + D +P P L P SR GS++AS P + Y+ R+ N
Sbjct: 419 KEKRKRMKRD--QPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEM-----RMQNNSS 471
Query: 476 TSGRPH-KVPRLSSGATIGAAIVEAENSFETDPQ 508
S P+ S + +G +AE+S +++P+
Sbjct: 472 PSISPNTSFTSDGSPSPLGGIKRKAEDS-DSEPE 504
Score = 612 (220.5 bits), Expect = 9.7e-185, Sum P(2) = 9.7e-185
Identities = 141/319 (44%), Positives = 187/319 (58%)
Query: 525 KSDAFNSDN-PE-EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 582
K A +SD+ PE ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+
Sbjct: 493 KRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVL 550
Query: 583 HYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHAL 641
YYY+G SW+W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + L
Sbjct: 551 RYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFL 610
Query: 642 PEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLT 701
P +RKLM+DP+S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT
Sbjct: 611 PPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLT 670
Query: 702 EEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMN 761
EE RRNS+ D+LFV HPL I L Q E VEV PEL C G+
Sbjct: 671 PEETRRNSLGGDVLFVGKHHPLHDFILEL----YQTGSTEPVEVP----PEL--CH-GIQ 719
Query: 762 GYISPCAGDPHPP-VFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKIV 819
G S P + SPV + D+ N V+ +K P A ++ + V+ P
Sbjct: 720 GKFSLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDPQFAEDYIFK---AVMLPGARK 776
Query: 820 QLEDLKPAPVLWHEDSGRR 838
LKP+ W + S R
Sbjct: 777 PAAVLKPSD--WEKSSNGR 793
Score = 38 (18.4 bits), Expect = 4.5e-124, Sum P(2) = 4.5e-124
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 648 LMTDPNSPISDFYPTDFEVDMNGKRYSWQ 676
++ P + P+D+E NG+++ Q
Sbjct: 770 MLPGARKPAAVLKPSDWEKSSNGRQWKPQ 798
>UNIPROTKB|E2RMS9 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343
GO:GO:0005634 GO:GO:0008270 GO:GO:0003676 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 GeneTree:ENSGT00670000098098
KO:K12619 CTD:22803 OMA:RKRMKRD EMBL:AAEX03013750
RefSeq:XP_534324.2 Ensembl:ENSCAFT00000008370 GeneID:477133
KEGG:cfa:477133 NextBio:20852667 Uniprot:E2RMS9
Length = 950
Score = 1209 (430.6 bits), Expect = 1.2e-184, Sum P(2) = 1.2e-184
Identities = 252/514 (49%), Positives = 326/514 (63%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPAF+RWL+ KYP ++ + +EE+P +GVKIPVD SKPNPN +E+DNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXX 120
PC HPED+PAP DE+ +F+YIDRLF +VRPR+LLYMAIDGVAPRAKMNQQ
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHL 180
LPP+ + FDSN ITPGTEFM L+ L+YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 181 RLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLA 240
RLNNDPGW+ + VILSDA+ PGEGEHKIM Y+R QR P +DPNT HCL G DADLIML
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 241 LATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK 300
LATHE +F+I+RE F P + C LC Q GH +CEG + K G+ DE D + +
Sbjct: 241 LATHEPNFTIIREE-FKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEG 299
Query: 301 PYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA 360
+ FL + LREYL+ E + + PF D+E +DD++FMCFFVGNDFLPH+P+LEIREGA
Sbjct: 300 EFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGA 359
Query: 361 INLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIK 420
I+ L+ +YK GGYLT+ +L+RV+ + AVG ED IF+KR + + R +
Sbjct: 360 IDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKR-KDDEDSFRRRQ 418
Query: 421 REKAQARRGDDVEPLAQPDS-LVPV---SRFH-GSRLASGPSPSPYQQSECVGRLDNGKG 475
+EK + + D +P P L P SR GS++AS P + Y+ R+ N
Sbjct: 419 KEKRKRMKRD--QPAFSPGGILTPHALGSRNSPGSQVASNPRQAAYEM-----RMQNNSS 471
Query: 476 TSGRPH-KVPRLSSGATIGAAIVEAENSFETDPQ 508
S P+ S + IG +AE+S +++P+
Sbjct: 472 PSISPNTSFTSDGSPSPIGGIKRKAEDS-DSEPE 504
Score = 604 (217.7 bits), Expect = 1.2e-184, Sum P(2) = 1.2e-184
Identities = 138/319 (43%), Positives = 186/319 (58%)
Query: 525 KSDAFNSDN-PE-EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 582
K A +SD+ PE ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+
Sbjct: 493 KRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVL 550
Query: 583 HYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHAL 641
YYY+G SW+W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + L
Sbjct: 551 RYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFL 610
Query: 642 PEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLT 701
P +RKLM+DP+S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT
Sbjct: 611 PPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLT 670
Query: 702 EEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMN 761
EE +RNS+ D+LFV HPL I L Q E V+V PEL C G+
Sbjct: 671 PEETKRNSLGGDVLFVGKHHPLHDFILEL----YQTGSTEPVDVP----PEL--CH-GIQ 719
Query: 762 GYISPCAGDPHPP-VFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKIV 819
G S P + SPV + D+ N + +K P A ++ + V+ P
Sbjct: 720 GKFSLDEEAVLPDQIVCSPVPMLRDLTQNAAISINFKDPQFAEDYIFK---AVMLPGARK 776
Query: 820 QLEDLKPAPVLWHEDSGRR 838
LKP+ W + S R
Sbjct: 777 PTPVLKPSD--WEKSSNGR 793
>UNIPROTKB|Q5R4L5 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9601 "Pongo
abelii" [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0008409
"5'-3' exonuclease activity" evidence=ISS] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 GO:GO:0008409 GO:GO:0000738 GO:GO:0006353
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534 KO:K12619
CTD:22803 HOVERGEN:HBG036677 EMBL:CR861231 RefSeq:NP_001126942.1
UniGene:Pab.18504 PRIDE:Q5R4L5 GeneID:100173960 KEGG:pon:100173960
InParanoid:Q5R4L5 Uniprot:Q5R4L5
Length = 950
Score = 1197 (426.4 bits), Expect = 2.6e-184, Sum P(2) = 2.6e-184
Identities = 254/542 (46%), Positives = 332/542 (61%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPAF+RWL+ KYP ++ + +EE+P +GVKIPVD SKPNPN +E+DNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXX 120
PC HPED+PAP DE+ +F+YIDRLF +VRPR+LLYMAIDGVAPRAKMNQQ
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHL 180
LPP+ + FDSN ITPGTEFM L+ L+YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 181 RLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLA 240
RLNNDPGW+ + VILSDA+ PGEGEHKIM Y+R QR P +DPNT HCL G DADLIML
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 241 LATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK 300
LATHE +F+I+RE F P + C LC Q GH +CEG + K + DE D + +
Sbjct: 241 LATHEPNFTIIREE-FKPNKPKPCGLCNQFGHEVKDCEGLLREKKVKHDELADSLPCAEG 299
Query: 301 PYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA 360
+ FL + LREYL+ E + + PF D+E +DD++FMCFFVGNDFLPH+P+LEIRE A
Sbjct: 300 EFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENA 359
Query: 361 INLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIK 420
I+ L+ +YK GGYLT+ +L+RV+ + AVG ED IF+KR + + R +
Sbjct: 360 IDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKR-KDDEDSFRRRQ 418
Query: 421 REKAQARRGDDVEPLAQPDS-LVPV---SRFH-GSRLASGPSPSPYQQSECVGRLDNGKG 475
+EK + + D +P P L P SR GS++AS P + Y+ R+ N
Sbjct: 419 KEKRKRMKRD--QPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEM-----RMQNNSS 471
Query: 476 TSGRPH-KVPRLSSGATIGAAIVEAENSFETDPQXXXXXXXXXXXXXXRDKSDAFNSDNP 534
S P+ S + IG +AE+S +++P+ R + F++D
Sbjct: 472 PSISPNTSFTSDGSPSPIGGIKRKAEDS-DSEPEPEDNVRLWEAGWKQRYYKNKFDADAA 530
Query: 535 EE 536
+E
Sbjct: 531 DE 532
Score = 613 (220.8 bits), Expect = 2.6e-184, Sum P(2) = 2.6e-184
Identities = 141/319 (44%), Positives = 188/319 (58%)
Query: 525 KSDAFNSDN-PE-EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 582
K A +SD+ PE ED V+L E GWK+RYY+ KF+A +E+ R+ VV Y EGLCWV+
Sbjct: 493 KRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDADAADEK--FRRKVVQSYVEGLCWVL 550
Query: 583 HYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHAL 641
YYY+G SW+W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + L
Sbjct: 551 RYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFL 610
Query: 642 PEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLT 701
P +RKLM+DP+S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT
Sbjct: 611 PPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLT 670
Query: 702 EEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMN 761
EE RRNS+ D+LFV HPL I L Q E V+V PEL C G+
Sbjct: 671 PEETRRNSLGGDVLFVGKHHPLHDFILEL----YQTGSTEPVDVP----PEL--CH-GIQ 719
Query: 762 GYISPCAGDPHPP-VFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKIV 819
G S P + SPV + D+ N V+ +K P A ++ + V+ P
Sbjct: 720 GKFSLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDPQFAEDYIFK---AVMLPGARK 776
Query: 820 QLEDLKPAPVLWHEDSGRR 838
LKP+ W + S R
Sbjct: 777 PAAVLKPSD--WEKSSNGR 793
Score = 38 (18.4 bits), Expect = 1.5e-123, Sum P(2) = 1.5e-123
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 648 LMTDPNSPISDFYPTDFEVDMNGKRYSWQ 676
++ P + P+D+E NG+++ Q
Sbjct: 770 MLPGARKPAAVLKPSDWEKSSNGRQWKPQ 798
>UNIPROTKB|F1SAU5 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016235 "aggresome" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016070
GO:GO:0000738 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 OMA:RKRMKRD
EMBL:CU633728 EMBL:CU459108 RefSeq:XP_003134355.2 UniGene:Ssc.7627
Ensembl:ENSSSCT00000007781 GeneID:100517201 KEGG:ssc:100517201
Uniprot:F1SAU5
Length = 950
Score = 1205 (429.2 bits), Expect = 5.3e-184, Sum P(2) = 5.3e-184
Identities = 252/515 (48%), Positives = 327/515 (63%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPAF+RWL+ KYP ++ + +EE+P +GVKIPVD SKPNPN +E+DNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXX 120
PC HPED+PAP DE+ +F+YIDRLF +VRPR+LLYMAIDGVAPRAKMNQQ
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHL 180
LPP+ + FDSN ITPGTEFM L+ L+YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 181 RLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLA 240
RLNNDPGW+ + VILSDA+ PGEGEHKIM Y+R QR P +DPNT HCL G DADLIML
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 241 LATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK 300
LATHE +F+I+RE F P + C LC Q GH +CEG + K G+ DE D + +
Sbjct: 241 LATHEPNFTIIREE-FKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPSAEG 299
Query: 301 PYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA 360
+ FL + LREYL+ E + + PF D+E +DD++FMCFFVGNDFLPH+P+LEIREGA
Sbjct: 300 EFIFLRLSVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGA 359
Query: 361 INLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIK 420
I+ L+ +YK GGYLT+ +L+RV+ + AVG ED IF+KR + + R +
Sbjct: 360 IDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKR-KDDEDSFRRRQ 418
Query: 421 REKAQARRGDDVEPLAQPDS-LVPV---SRFH-GSRLASGPSPSPYQQSECVGRLDNGKG 475
+EK + + D +P P L P SR GS++AS P + Y+ R+ N
Sbjct: 419 KEKRKRMKRD--QPSFSPGGILTPHALGSRNSPGSQVASNPRQAAYEM-----RMQNNSS 471
Query: 476 TSGRPHKVPRLSSGATI--GAAIVEAENSFETDPQ 508
S P+ +S G+ G +AE+S +++P+
Sbjct: 472 PSVSPN-TSFISDGSPSPRGGIKRKAEDS-DSEPE 504
Score = 602 (217.0 bits), Expect = 5.3e-184, Sum P(2) = 5.3e-184
Identities = 139/319 (43%), Positives = 185/319 (57%)
Query: 525 KSDAFNSDN-PE-EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 582
K A +SD+ PE ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+
Sbjct: 493 KRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVL 550
Query: 583 HYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHAL 641
YYY+G SW+W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + L
Sbjct: 551 RYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFL 610
Query: 642 PEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLT 701
P +RKLM+DP+S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT
Sbjct: 611 PPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLT 670
Query: 702 EEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMN 761
EE RRNS+ D+LFV HPL + L + E V+V PEL C G+
Sbjct: 671 PEETRRNSLGGDVLFVGKHHPLHDFVLEL----YKTGSTESVDVP----PEL--CH-GIQ 719
Query: 762 GYISPCAGDPHPP-VFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKIV 819
G S P V SPV + D+ N + +K P A +V + V+ P
Sbjct: 720 GKFSLDEEAILPDQVVCSPVPMLRDLTQNGTISINFKDPQFAEDYVFK---AVMLPGARK 776
Query: 820 QLEDLKPAPVLWHEDSGRR 838
LKP W + S R
Sbjct: 777 PAPVLKPGD--WEKSSNGR 793
>RGD|1310218 [details] [associations]
symbol:Xrn2 "5'-3' exoribonuclease 2" species:10116 "Rattus
norvegicus" [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0007283 "spermatogenesis" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISO] [GO:0016049 "cell growth"
evidence=IEA;ISO] [GO:0016070 "RNA metabolic process"
evidence=IEA;ISO] [GO:0016235 "aggresome" evidence=IEA;ISO]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 RGD:1310218
GO:GO:0005730 GO:GO:0016049 GO:GO:0008270 GO:GO:0003676
GO:GO:0016070 GO:GO:0000738 EMBL:CH474026 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 GeneTree:ENSGT00670000098098
OMA:RKRMKRD OrthoDB:EOG4M0F0Z IPI:IPI00357938 UniGene:Rn.64021
Ensembl:ENSRNOT00000016351 Uniprot:D4A914
Length = 951
Score = 1200 (427.5 bits), Expect = 2.9e-183, Sum P(2) = 2.9e-183
Identities = 249/514 (48%), Positives = 325/514 (63%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPAF+RWL+ KYP ++ + +EE+P +GVKIPVD SKPNPN +E+DNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXX 120
PC HPED+PAP DE+ +F+YIDRLF +VRPR+LLYMAIDGVAPRAKMNQQ
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHL 180
LPP+ + FDSN ITPGTEFM L+ L+YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 181 RLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLA 240
RLNNDPGW+ + VILSDA+ PGEGEHKIM Y+R QR P +DPNT HCL G DADLIML
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 241 LATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK 300
LATHE +F+I+RE F P + C LC Q GH +CEG + K G+ DE D + +
Sbjct: 241 LATHEPNFTIIREE-FKPNKPKPCALCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEG 299
Query: 301 PYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA 360
+ FL + LREYL+ E + + PF D+E +DD++FMCFFVGNDFLPH+P+LEIREGA
Sbjct: 300 EFIFLRLNVLREYLERELTMASLPFPFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGA 359
Query: 361 INLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIK 420
I+ L+ +YK GGYLT+ +L+RV+ + AVG ED IF+KR + + R +
Sbjct: 360 IDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKR-KDDEDSFRRRQ 418
Query: 421 REKAQARRGDDVEPLAQPDS-LVPV---SRFH-GSRLASGPSPSPYQQSECVGRLDNGKG 475
+EK + + D +P P L P SR G ++AS P + Y+ R+ +
Sbjct: 419 KEKRKRMKRD--QPAFTPSGILTPYALGSRNSPGCQVASNPRQAAYEM-----RMQSNSS 471
Query: 476 TSGRPH-KVPRLSSGATIGAAIVEAENSFETDPQ 508
S P+ S + +G +AE+S +++P+
Sbjct: 472 PSISPNTSFASDGSPSPLGGLKRKAEDS-DSEPE 504
Score = 600 (216.3 bits), Expect = 2.9e-183, Sum P(2) = 2.9e-183
Identities = 141/320 (44%), Positives = 187/320 (58%)
Query: 525 KSDAFNSDN-PE-EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 582
K A +SD+ PE ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+
Sbjct: 493 KRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVL 550
Query: 583 HYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHAL 641
YYY+G SW+W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + L
Sbjct: 551 RYYYQGCASWKWYYPFHYAPFASDFEGIADMPSEFEKGTKPFKPLEQLMGVFPAASGNFL 610
Query: 642 PEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLT 701
P +RKLM+DP+S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT
Sbjct: 611 PPTWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLT 670
Query: 702 EEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMN 761
EE RRNS+ +D+LFV HPL I L Q E V+V PEL C G+
Sbjct: 671 PEENRRNSLGSDVLFVGKVHPLHDFILEL----YQTGSTEPVDVP----PEL--CH-GIQ 719
Query: 762 GYIS--PCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKI 818
G S A P V SPV + D+ N + +K P A +V + ++ P
Sbjct: 720 GKFSLDEEAILPDQTVC-SPVPMLRDLTQNTAISINFKDPQFAEDYVFK---AIMLPGAR 775
Query: 819 VQLEDLKPAPVLWHEDSGRR 838
LKP W + S R
Sbjct: 776 KPAAVLKPGD--WEKSSNGR 793
>UNIPROTKB|F1PB11 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016235 "aggresome" evidence=IEA] [GO:0016070
"RNA metabolic process" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016070
GO:GO:0000738 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 EMBL:AAEX03013750
Ensembl:ENSCAFT00000008379 Uniprot:F1PB11
Length = 948
Score = 1141 (406.7 bits), Expect = 1.9e-177, Sum P(2) = 1.9e-177
Identities = 244/512 (47%), Positives = 316/512 (61%)
Query: 3 VPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIHPC 62
+P F W AE + ++ + EP +GVKIPVD SKPNPN +E+DNLYLDMNGIIHPC
Sbjct: 1 LPGFLTWTAECFENLINNSHIVEPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPC 60
Query: 63 FHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXXXX 122
HPED+PAP DE+ +F+YIDRLF +VRPR+LLYMAIDGVAPRAKMNQQ
Sbjct: 61 THPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRAS 120
Query: 123 XXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHLRL 182
LPP+ + FDSN ITPGTEFM L+ L+YYI RL
Sbjct: 121 KEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIADRL 180
Query: 183 NNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALA 242
NNDPGW+ + VILSDA+ PGEGEHKIM Y+R QR P +DPNT HCL G DADLIML LA
Sbjct: 181 NNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLA 240
Query: 243 THEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPY 302
THE +F+I+RE F P + C LC Q GH +CEG + K G+ DE D + + +
Sbjct: 241 THEPNFTIIREE-FKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGEF 299
Query: 303 QFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAIN 362
FL + LREYL+ E + + PF D+E +DD++FMCFFVGNDFLPH+P+LEIREGAI+
Sbjct: 300 IFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAID 359
Query: 363 LLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKRE 422
L+ +YK GGYLT+ +L+RV+ + AVG ED IF+KR + + R ++E
Sbjct: 360 RLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKR-KDDEDSFRRRQKE 418
Query: 423 KAQARRGDDVEPLAQPDS-LVPV---SRFH-GSRLASGPSPSPYQQSECVGRLDNGKGTS 477
K + + D +P P L P SR GS++AS P + Y+ R+ N S
Sbjct: 419 KRKRMKRD--QPAFSPGGILTPHALGSRNSPGSQVASNPRQAAYEM-----RMQNNSSPS 471
Query: 478 GRPH-KVPRLSSGATIGAAIVEAENSFETDPQ 508
P+ S + IG +AE+S +++P+
Sbjct: 472 ISPNTSFTSDGSPSPIGGIKRKAEDS-DSEPE 502
Score = 604 (217.7 bits), Expect = 1.9e-177, Sum P(2) = 1.9e-177
Identities = 138/319 (43%), Positives = 186/319 (58%)
Query: 525 KSDAFNSDN-PE-EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 582
K A +SD+ PE ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+
Sbjct: 491 KRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVL 548
Query: 583 HYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHAL 641
YYY+G SW+W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + L
Sbjct: 549 RYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFL 608
Query: 642 PEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLT 701
P +RKLM+DP+S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT
Sbjct: 609 PPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLT 668
Query: 702 EEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMN 761
EE +RNS+ D+LFV HPL I L Q E V+V PEL C G+
Sbjct: 669 PEETKRNSLGGDVLFVGKHHPLHDFILEL----YQTGSTEPVDVP----PEL--CH-GIQ 717
Query: 762 GYISPCAGDPHPP-VFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKIV 819
G S P + SPV + D+ N + +K P A ++ + V+ P
Sbjct: 718 GKFSLDEEAVLPDQIVCSPVPMLRDLTQNAAISINFKDPQFAEDYIFK---AVMLPGARK 774
Query: 820 QLEDLKPAPVLWHEDSGRR 838
LKP+ W + S R
Sbjct: 775 PTPVLKPSD--WEKSSNGR 791
>UNIPROTKB|Q60SG7 [details] [associations]
symbol:xrn-2 "5'-3' exoribonuclease 2 homolog" species:6238
"Caenorhabditis briggsae" [GO:0000738 "DNA catabolic process,
exonucleolytic" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 EMBL:HE600928 GO:GO:0008409
GO:GO:0000738 GO:GO:0006353 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 STRING:Q60SG7 PRIDE:Q60SG7
EnsemblMetazoa:CBG20900 WormBase:CBG20900 HOGENOM:HOG000205514
Uniprot:Q60SG7
Length = 976
Score = 1651 (586.2 bits), Expect = 1.2e-173, Sum P(2) = 1.2e-173
Identities = 375/878 (42%), Positives = 499/878 (56%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPAF+RWL +KYP V + E+ +DG ++PVD ++PNPN E+DNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLTKKYPATVVNANEDRQRGVDGRRVPVDCTQPNPNFQEFDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXX 120
PC HPEDRPAP DE+F +F+YIDR+F +VRPR+LLYMAIDGVAPRAKMNQQ
Sbjct: 61 PCTHPEDRPAPKNEDEMFALIFEYIDRIFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQV---FDSNVITPGTEFMAVLSIALQYY 177
+P K + FDSN ITPGT FMA L+ AL+YY
Sbjct: 121 ASKEMAEKAASIEEQRRRLIAEGIAVPQKKKDEEEAHFDSNCITPGTPFMARLADALRYY 180
Query: 178 IHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLI 237
IH R+ NDP W I++ILSDANVPGEGEHKIM Y+R QR P +DPNT HCL G DADLI
Sbjct: 181 IHDRVTNDPAWANIEIILSDANVPGEGEHKIMDYIRKQRGNPAHDPNTVHCLCGADADLI 240
Query: 238 MLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVV 297
ML +ATHE +F+I+RE F P Q C LCGQ GH C G A + GDE
Sbjct: 241 MLGIATHEANFNIIREE-FVPNQPRACELCGQYGHELKECRG-----AENDTDLGDEYCK 294
Query: 298 PK---KPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTL 354
P+ K + FL I LREYL+ E +PN PF+ +LE +DD++F+CFFVGNDFLPH+P+L
Sbjct: 295 PEQREKNFIFLRIPVLREYLEKEMAMPNLPFQFNLERALDDWVFLCFFVGNDFLPHLPSL 354
Query: 355 EIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQR 414
EIREGAI+ L+ +YK+ + GYLT P L RVE ++ +G ED IF++R + +R
Sbjct: 355 EIREGAIDRLIKLYKEMVYEMKGYLTKDGIPELDRVEMIMRGLGKVEDEIFKRRQQDEER 414
Query: 415 HAERIKREKAQAR-----RGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSECVGR 469
E K +KA+ + RG QP + VP HG LA P +P S G
Sbjct: 415 FKENQKNKKARMQQYGRGRGGRGRGRGQP-AYVPS---HGI-LA--PMSAPMHHS---GE 464
Query: 470 LDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQXXXXXXXXXXXXXXRDKSDAF 529
+ R + ++ A + + + +
Sbjct: 465 STRQMASDARQAAMQFNATNDANAQAAANLKALLNVKGEQSPAEVAAQESRKRKAEQPII 524
Query: 530 NSDNPEE--DKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYE 587
+D EE D ++L E GWKERYY KF+ + + + R V Y EGLCWV+ YYY+
Sbjct: 525 ITDEDEEPKDDIRLYESGWKERYYRAKFDVGSDDV--DFRHRVAWAYVEGLCWVLRYYYQ 582
Query: 588 GVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHALPEHYR 646
G SW W++PYHYAPFASD + + +F F PF P QL+ VFP+AS LP ++
Sbjct: 583 GCSSWDWYFPYHYAPFASDFETVGEFKPDFTRPTKPFNPLEQLMSVFPAASKQHLPVEWQ 642
Query: 647 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 706
KLMT+ SPI D YP DF +D+NGK+Y+WQG+A LPF+DE RLL+ +K + TLT+EE
Sbjct: 643 KLMTEDESPIIDLYPADFRIDLNGKKYAWQGVALLPFVDEQRLLETLKSVYPTLTDEEKY 702
Query: 707 RNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYIS- 765
RN+ + +F+ +H A + E K + V+ L+P L +G++G IS
Sbjct: 703 RNTRGPNRIFIGRNHKSFAFFQQVAES----KSNDLVD----LDPSLL---NGVSGKISY 751
Query: 766 -PCAGDPHPPVFRSPVASME--DIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLE 822
A P P F SPV+ E D+ N +C +Y+ P+ + P + K+ +
Sbjct: 752 DSTATAPGLP-FPSPVSHEECQDLPTNCGICVLYEDPEYPANYVFPAVRLDGAKEAEKT- 809
Query: 823 DLKPAPVLWHED-SGRRPHENG--RHNPHG--TISGRQ 855
L+P W+E GR G R+ P G +SG++
Sbjct: 810 -LRPED--WNERRDGRFNPTIGFNRNAPRGGLDLSGQR 844
Score = 58 (25.5 bits), Expect = 1.2e-173, Sum P(2) = 1.2e-173
Identities = 57/215 (26%), Positives = 74/215 (34%)
Query: 809 PAGVIFPKKIVQLEDLKPAP-VLWHEDSGRRPHENGRHNPHGTISGRQ------LGEAAH 861
PA +FP V+L+ K A L ED R +GR NP TI + L +
Sbjct: 790 PANYVFPA--VRLDGAKEAEKTLRPEDWNER--RDGRFNP--TIGFNRNAPRGGLDLSGQ 843
Query: 862 RLVANSLQHMKVDRNGYGDRMHGXXXXXXXXXXXXXXXXXQEYGVYDQGYNRFSQPRTDS 921
R + + ++ DR G D G + G Y GYN S+P
Sbjct: 844 RHINHHVRGAMYDRQGGNDNYRGGYRGGYQGGYDDRRGG-RGGGGYRGGYND-SRPDFGR 901
Query: 922 YPAGHSQSSISAAQPPYDGGYSQHYASNTSHHPNRRYHPQ--YDRNSSGEHPTHLYNPSG 979
AG +GG QHY + + R H Q Y N G Y+ G
Sbjct: 902 NYAGR------------EGGGPQHYHEHQPGGGHGRPHDQQPYQDNRRGGG----YHRGG 945
Query: 980 IHQNGGPRYPPRPMGSTSSGANLYPPQGGYSGYQS 1014
+ GP RP G GGY G S
Sbjct: 946 --RGNGPTGYQRPPYRGGRGRG----GGGYQGNSS 974
>FB|FBgn0031868 [details] [associations]
symbol:Rat1 species:7227 "Drosophila melanogaster"
[GO:0004534 "5'-3' exoribonuclease activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 GO:GO:0005634 EMBL:AE014134
GO:GO:0022008 GO:GO:0006355 GO:GO:0046872 GO:GO:0006397
GO:GO:0003676 GO:GO:0008409 GO:GO:0000738 GO:GO:0006353
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 KO:K12619 OMA:RKRMKRD EMBL:BT021334
EMBL:BT056259 RefSeq:NP_609082.1 UniGene:Dm.8576
ProteinModelPortal:Q9VM71 SMR:Q9VM71 MINT:MINT-855535 STRING:Q9VM71
PaxDb:Q9VM71 EnsemblMetazoa:FBtr0079345 EnsemblMetazoa:FBtr0332324
GeneID:33964 KEGG:dme:Dmel_CG10354 UCSC:CG10354-RA CTD:33964
FlyBase:FBgn0031868 InParanoid:Q9VM71 OrthoDB:EOG41VHHV
PhylomeDB:Q9VM71 GenomeRNAi:33964 NextBio:786169 Bgee:Q9VM71
GermOnline:CG10354 Uniprot:Q9VM71
Length = 908
Score = 1075 (383.5 bits), Expect = 1.1e-168, Sum P(3) = 1.1e-168
Identities = 220/432 (50%), Positives = 271/432 (62%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVID-GVKIPVDTSKPNPNGLEYDNLYLDMNGII 59
MGVPAF+RWL+ KYP V+ + E + V D G I D + PNPNG+E+DNLYLDMNGII
Sbjct: 1 MGVPAFFRWLSRKYPSVIIECNENKQVDADTGRNIYEDPTLPNPNGIEFDNLYLDMNGII 60
Query: 60 HPCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXX 119
HPC HPED+PAP DE+ +F+ IDRLF +VRPRKLLYMAIDGVAPRAKMNQQ
Sbjct: 61 HPCTHPEDKPAPKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 120
Query: 120 XXXXXXXXXXXXXXXXXXXXXXXXXKLPP-KSDSQVFDSNVITPGTEFMAVLSIALQYYI 178
KLPP K + FDSN ITPGT FM LS L Y++
Sbjct: 121 RAAKETTEKRLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFV 180
Query: 179 HLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIM 238
H R NN+P W+ IKVILSDANVPGEGEHKIM Y+R QR P +DPNT+H L G DADLIM
Sbjct: 181 HDRQNNNPAWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIM 240
Query: 239 LALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVP 298
L LATHE +F+I+RE F P + C +C GH C G + K D +
Sbjct: 241 LGLATHEPNFTIIREE-FLPNKPRPCDICNGFGHEMDKCVGLGATAPTSANFKPDVPIGA 299
Query: 299 KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIRE 358
+ + F+ + LREYL +PN PFE E +DD++FMCFFVGNDFLPH+P+LEIRE
Sbjct: 300 EVKFIFVRLSVLREYLKQTLEMPNLPFEYSFERALDDWVFMCFFVGNDFLPHLPSLEIRE 359
Query: 359 GAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAER 418
GA++ L+ +YKK GYLTD +L RV+ + +G+ ED+IF+ R R ++ R
Sbjct: 360 GAVDRLVELYKKCVYKTRGYLTDSGDVNLDRVQLIMTDLGNAEDQIFKSRQRREEQFKAR 419
Query: 419 IKREKAQARRGD 430
K K Q R D
Sbjct: 420 DKARKRQERNQD 431
Score = 542 (195.9 bits), Expect = 1.1e-168, Sum P(3) = 1.1e-168
Identities = 116/282 (41%), Positives = 166/282 (58%)
Query: 526 SDAFNSDNPEE----DKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWV 581
SD N D+ +E D+V+L E G+K+RYYE KF+ P ++ R V L+Y GLCWV
Sbjct: 471 SDMANLDDEDEEENNDEVRLWEDGFKDRYYESKFDV-APGN-QQFRYAVALQYVRGLCWV 528
Query: 582 MHYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHA 640
+ YYY+G SW W++PYHYAPFASD ++ + FE G PF P QL+GVFP+ASS
Sbjct: 529 LKYYYQGCASWNWYFPYHYAPFASDFVNIQGLSTMFEKGTKPFNPLEQLMGVFPAASSSH 588
Query: 641 LPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTL 700
+PE + KLM+DP SPI DFYP DF++D+NGK+++WQG+A LPF+DE RL + L
Sbjct: 589 VPEPWAKLMSDPESPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEKRLFKALVPYYDQL 648
Query: 701 TEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLK-IKERVEVKERLNPELSMCSDG 759
T EE +RN + L++ P H K++K I E+ + E + +S DG
Sbjct: 649 TGEEVKRNKRGDNYLYISNQSP----------HYKKVKKISEKDD--ESVCKAISF--DG 694
Query: 760 MNGYISPCA-GDPHPPVFRSPVASMEDIMGNQVLCAIYKLPD 800
M G + V +SP++ + DI N + ++ P+
Sbjct: 695 MRGTLGKTELNTAISGVLKSPISGLSDINDNITVTTTFRDPE 736
Score = 61 (26.5 bits), Expect = 1.1e-168, Sum P(3) = 1.1e-168
Identities = 21/90 (23%), Positives = 38/90 (42%)
Query: 940 GGYSQHYASNTSHHPNRRYHPQYDRNSSGEHPTHLYNPSGIHQNG-GPRYPPRPMGSTSS 998
G Q Y +N+ ++ N Y+ Y+++ G + + YN Q G R+
Sbjct: 822 GNQGQSYQNNSRNY-NYNYNNNYNQHQGGGYQNN-YNNRQQQQYGHNQRF-------NQD 872
Query: 999 GANLYPPQGGYSGYQSPAAGSFNQWGGANQ 1028
+N Q ++ Y P ++ Q GG+ Q
Sbjct: 873 NSN--QQQRNFNNYNGPRNNNYQQQGGSRQ 900
Score = 56 (24.8 bits), Expect = 3.6e-168, Sum P(3) = 3.6e-168
Identities = 12/50 (24%), Positives = 17/50 (34%)
Query: 938 YDGGYSQHYASNTSHHPNRRYHPQYDRNSSGEHPTHLYNPSGIHQNGGPR 987
Y+ Y+QH ++ N R QY N + GPR
Sbjct: 839 YNNNYNQHQGGGYQNNYNNRQQQQYGHNQRFNQDNSNQQQRNFNNYNGPR 888
Score = 45 (20.9 bits), Expect = 5.2e-167, Sum P(3) = 5.2e-167
Identities = 35/171 (20%), Positives = 67/171 (39%)
Query: 813 IFPKKIVQLED-LKPAPVLWHEDSGRRPHENGRHNPHGTISGRQLGEAAHRLVANSLQHM 871
IF K +LE+ + P VL +E SG + N H ++ + ++ HR++ +++
Sbjct: 742 IFEAK--RLENAVDPPQVLPNEQSGNKHRPVIGFNSH--LTRAYVPDSGHRMLNAGIRNQ 797
Query: 872 KVDR-NGYGDRMHGXXXXXXXXXXXXXXXXXQEYGV-YDQGYNR-FSQPRTDSYPAGHSQ 928
+ NG G +G Q Y+ YN ++Q + Y ++
Sbjct: 798 QGGGGNGGGGGGYGQGGGYGQGIGGNQGQSYQNNSRNYNYNYNNNYNQHQGGGYQNNYNN 857
Query: 929 SSISAAQPPYDGGYSQHYASNTSHHPNRRYHPQYDRNSSGEHPTHLYNPSG 979
Q Y G++Q + + S+ R ++ N +G + Y G
Sbjct: 858 RQ----QQQY--GHNQRFNQDNSNQQQRNFN-----NYNGPRNNN-YQQQG 896
>WB|WBGene00006964 [details] [associations]
symbol:xrn-2 species:6239 "Caenorhabditis elegans"
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA;IMP;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040028 "regulation of vulval
development" evidence=IGI] [GO:0010587 "miRNA catabolic process"
evidence=IGI;IMP;IDA] [GO:0060965 "negative regulation of gene
silencing by miRNA" evidence=IMP] [GO:0040034 "regulation of
development, heterochronic" evidence=IGI] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0005730 GO:GO:0002119
GO:GO:0006355 GO:GO:0046872 GO:GO:0018996 GO:GO:0008270
GO:GO:0006397 GO:GO:0040011 GO:GO:0000003 GO:GO:0003676
EMBL:AL110490 GO:GO:0040034 GO:GO:0040028 GO:GO:0000738
GO:GO:0060965 GO:GO:0006353 GO:GO:0010587 eggNOG:COG5049
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 PIR:T27005 RefSeq:NP_496958.2
ProteinModelPortal:Q9U299 SMR:Q9U299 DIP:DIP-24636N IntAct:Q9U299
MINT:MINT-1111930 STRING:Q9U299 PaxDb:Q9U299 PRIDE:Q9U299
EnsemblMetazoa:Y48B6A.3.1 EnsemblMetazoa:Y48B6A.3.2 GeneID:175071
KEGG:cel:CELE_Y48B6A.3 UCSC:Y48B6A.3 CTD:175071 WormBase:Y48B6A.3
GeneTree:ENSGT00670000098098 InParanoid:Q9U299 KO:K12619
OMA:TNDANET NextBio:886632 Uniprot:Q9U299
Length = 975
Score = 1615 (573.6 bits), Expect = 1.9e-168, Sum P(2) = 1.9e-168
Identities = 371/901 (41%), Positives = 498/901 (55%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPAF+RWL +KYP V + E+ DG ++PVD ++PNPN E+DNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLTKKYPATVVNANEDRQRDQDGNRVPVDCTQPNPNFQEFDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXX 120
PC HPEDRPAP DE+F +F+YIDR++ +VRPR+LLYMAIDGVAPRAKMNQQ
Sbjct: 61 PCTHPEDRPAPKNEDEMFALIFEYIDRIYSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQV-FDSNVITPGTEFMAVLSIALQYYIH 179
+PPK + FDSN ITPGT FMA L+ AL+YYIH
Sbjct: 121 ASKEMAEKEASIEEQRNRLMAEGIAVPPKKKEEAHFDSNCITPGTPFMARLADALRYYIH 180
Query: 180 LRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIML 239
R+ ND W I++ILSDANVPGEGEHKIM YVR QR P +DPNT HCL G DADLIML
Sbjct: 181 DRVTNDASWANIEIILSDANVPGEGEHKIMDYVRKQRGNPAHDPNTVHCLCGADADLIML 240
Query: 240 ALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPK 299
+ATHE +F+I+RE F P Q C LCGQ GH C G A+ + + GD+ P+
Sbjct: 241 GIATHEANFNIIREE-FVPNQPRACDLCGQYGHELKECRG-AENET----DLGDDYCKPE 294
Query: 300 ---KPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEI 356
K + FL I LREYL+ E +PN PF+ D+E +DD++F+CFFVGNDFLPH+P+LEI
Sbjct: 295 QREKNFIFLRIPVLREYLEKELSMPNLPFKFDVERALDDWVFLCFFVGNDFLPHLPSLEI 354
Query: 357 REGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHA 416
REGAI+ L+ +YK+ + GYLT P L RVE ++ +G ED IF++R + +R
Sbjct: 355 REGAIDRLIKLYKEMVYQMKGYLTKDGIPELDRVEMIMKGLGRVEDEIFKRRQQDEERFQ 414
Query: 417 ERIKREKAQAR---------RGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSECV 467
E + +KA+ + RG QP + VP HG LA P +P S
Sbjct: 415 ENQRNKKARMQMYGGGGRGGRGRGRGRGQQP-AFVPT---HGI-LA--PMAAPMHHS--- 464
Query: 468 GRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQXXXXXXXXXXXXXXRDKSD 527
G + R + + AA ++A + + + K +
Sbjct: 465 GESTRQMASEARQTAMKFTNDANETAAANLKALLNVKGEESPADIASRKRKAEQPLIKPE 524
Query: 528 AFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYE 587
+ P++D ++L E GWK+RYY KF+ + + E R V Y EGLCWV+ YYY+
Sbjct: 525 EEEDEGPKDD-IRLYESGWKDRYYRAKFDVGSDDI--EFRHRVAWAYVEGLCWVLRYYYQ 581
Query: 588 GVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHALPEHYR 646
G SW W++PYHYAPFASD + + +F F PF P QL+ VFP+AS LP ++
Sbjct: 582 GCASWDWYFPYHYAPFASDFETVGEFQPDFTRPTKPFNPLEQLMSVFPAASKQHLPVEWQ 641
Query: 647 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 706
KLM +SPI D YP DF +D+NGK+Y+WQG+A LPF+DE RLL ++ + TLT EE +
Sbjct: 642 KLMIQDDSPIIDLYPADFRIDLNGKKYAWQGVALLPFVDETRLLATLQSVYPTLTAEEKQ 701
Query: 707 RNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISP 766
RN+ + +F+ +H S + + + K + V L+P L G Y S
Sbjct: 702 RNTRGPNRIFIGRNHK-SFEFF---QQVAESKSDDLVP----LDPTLLNGVSGKIAYDST 753
Query: 767 CAGDPHPPVFRSPVASME--DIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDL 824
P P F SPV E D+ N +C +Y+ P+ + P + K+ + L
Sbjct: 754 ATA-PGLP-FVSPVNHDECQDLPTNCGICVLYEDPEYPQDYIFPALRLDGAKE--PEKTL 809
Query: 825 KPAPVLWHEDSGRRPHEN-GRHNPHGTISGRQLGEAAHRLVANSLQHMKVDRNGYGDRMH 883
KP D +P R+ P G++ + H + N Y DR
Sbjct: 810 KPDDWNDRRDGRYQPQVGFNRNAPRGSLDQSGHRQVHHYVRGGGGGGGGYRGNSYDDRRG 869
Query: 884 G 884
G
Sbjct: 870 G 870
Score = 45 (20.9 bits), Expect = 1.9e-168, Sum P(2) = 1.9e-168
Identities = 15/47 (31%), Positives = 18/47 (38%)
Query: 905 GVYDQGYNRFSQPRTDSYPAGHSQSSISAAQPPYDGGYSQHYASNTS 951
G Y Q YN+ R G +PPY GG Y N+S
Sbjct: 931 GSYHQPYNQ--DQRRGGRGGGGGPPGYQ--RPPYRGGGGGGYHGNSS 973
>UNIPROTKB|Q9U299 [details] [associations]
symbol:xrn-2 "5'-3' exoribonuclease 2 homolog" species:6239
"Caenorhabditis elegans" [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0000738
"DNA catabolic process, exonucleolytic" evidence=ISS]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0005730
GO:GO:0002119 GO:GO:0006355 GO:GO:0046872 GO:GO:0018996
GO:GO:0008270 GO:GO:0006397 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:AL110490 GO:GO:0040034 GO:GO:0040028
GO:GO:0000738 GO:GO:0060965 GO:GO:0006353 GO:GO:0010587
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 PIR:T27005 RefSeq:NP_496958.2
ProteinModelPortal:Q9U299 SMR:Q9U299 DIP:DIP-24636N IntAct:Q9U299
MINT:MINT-1111930 STRING:Q9U299 PaxDb:Q9U299 PRIDE:Q9U299
EnsemblMetazoa:Y48B6A.3.1 EnsemblMetazoa:Y48B6A.3.2 GeneID:175071
KEGG:cel:CELE_Y48B6A.3 UCSC:Y48B6A.3 CTD:175071 WormBase:Y48B6A.3
GeneTree:ENSGT00670000098098 InParanoid:Q9U299 KO:K12619
OMA:TNDANET NextBio:886632 Uniprot:Q9U299
Length = 975
Score = 1615 (573.6 bits), Expect = 1.9e-168, Sum P(2) = 1.9e-168
Identities = 371/901 (41%), Positives = 498/901 (55%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPAF+RWL +KYP V + E+ DG ++PVD ++PNPN E+DNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLTKKYPATVVNANEDRQRDQDGNRVPVDCTQPNPNFQEFDNLYLDMNGIIH 60
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXX 120
PC HPEDRPAP DE+F +F+YIDR++ +VRPR+LLYMAIDGVAPRAKMNQQ
Sbjct: 61 PCTHPEDRPAPKNEDEMFALIFEYIDRIYSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQV-FDSNVITPGTEFMAVLSIALQYYIH 179
+PPK + FDSN ITPGT FMA L+ AL+YYIH
Sbjct: 121 ASKEMAEKEASIEEQRNRLMAEGIAVPPKKKEEAHFDSNCITPGTPFMARLADALRYYIH 180
Query: 180 LRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIML 239
R+ ND W I++ILSDANVPGEGEHKIM YVR QR P +DPNT HCL G DADLIML
Sbjct: 181 DRVTNDASWANIEIILSDANVPGEGEHKIMDYVRKQRGNPAHDPNTVHCLCGADADLIML 240
Query: 240 ALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPK 299
+ATHE +F+I+RE F P Q C LCGQ GH C G A+ + + GD+ P+
Sbjct: 241 GIATHEANFNIIREE-FVPNQPRACDLCGQYGHELKECRG-AENET----DLGDDYCKPE 294
Query: 300 ---KPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEI 356
K + FL I LREYL+ E +PN PF+ D+E +DD++F+CFFVGNDFLPH+P+LEI
Sbjct: 295 QREKNFIFLRIPVLREYLEKELSMPNLPFKFDVERALDDWVFLCFFVGNDFLPHLPSLEI 354
Query: 357 REGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHA 416
REGAI+ L+ +YK+ + GYLT P L RVE ++ +G ED IF++R + +R
Sbjct: 355 REGAIDRLIKLYKEMVYQMKGYLTKDGIPELDRVEMIMKGLGRVEDEIFKRRQQDEERFQ 414
Query: 417 ERIKREKAQAR---------RGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSECV 467
E + +KA+ + RG QP + VP HG LA P +P S
Sbjct: 415 ENQRNKKARMQMYGGGGRGGRGRGRGRGQQP-AFVPT---HGI-LA--PMAAPMHHS--- 464
Query: 468 GRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQXXXXXXXXXXXXXXRDKSD 527
G + R + + AA ++A + + + K +
Sbjct: 465 GESTRQMASEARQTAMKFTNDANETAAANLKALLNVKGEESPADIASRKRKAEQPLIKPE 524
Query: 528 AFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYE 587
+ P++D ++L E GWK+RYY KF+ + + E R V Y EGLCWV+ YYY+
Sbjct: 525 EEEDEGPKDD-IRLYESGWKDRYYRAKFDVGSDDI--EFRHRVAWAYVEGLCWVLRYYYQ 581
Query: 588 GVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHALPEHYR 646
G SW W++PYHYAPFASD + + +F F PF P QL+ VFP+AS LP ++
Sbjct: 582 GCASWDWYFPYHYAPFASDFETVGEFQPDFTRPTKPFNPLEQLMSVFPAASKQHLPVEWQ 641
Query: 647 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 706
KLM +SPI D YP DF +D+NGK+Y+WQG+A LPF+DE RLL ++ + TLT EE +
Sbjct: 642 KLMIQDDSPIIDLYPADFRIDLNGKKYAWQGVALLPFVDETRLLATLQSVYPTLTAEEKQ 701
Query: 707 RNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISP 766
RN+ + +F+ +H S + + + K + V L+P L G Y S
Sbjct: 702 RNTRGPNRIFIGRNHK-SFEFF---QQVAESKSDDLVP----LDPTLLNGVSGKIAYDST 753
Query: 767 CAGDPHPPVFRSPVASME--DIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDL 824
P P F SPV E D+ N +C +Y+ P+ + P + K+ + L
Sbjct: 754 ATA-PGLP-FVSPVNHDECQDLPTNCGICVLYEDPEYPQDYIFPALRLDGAKE--PEKTL 809
Query: 825 KPAPVLWHEDSGRRPHEN-GRHNPHGTISGRQLGEAAHRLVANSLQHMKVDRNGYGDRMH 883
KP D +P R+ P G++ + H + N Y DR
Sbjct: 810 KPDDWNDRRDGRYQPQVGFNRNAPRGSLDQSGHRQVHHYVRGGGGGGGGYRGNSYDDRRG 869
Query: 884 G 884
G
Sbjct: 870 G 870
Score = 45 (20.9 bits), Expect = 1.9e-168, Sum P(2) = 1.9e-168
Identities = 15/47 (31%), Positives = 18/47 (38%)
Query: 905 GVYDQGYNRFSQPRTDSYPAGHSQSSISAAQPPYDGGYSQHYASNTS 951
G Y Q YN+ R G +PPY GG Y N+S
Sbjct: 931 GSYHQPYNQ--DQRRGGRGGGGGPPGYQ--RPPYRGGGGGGYHGNSS 973
>POMBASE|SPAC26A3.12c [details] [associations]
symbol:dhp1 "5'-3' exoribonuclease Dhp1" species:4896
"Schizosaccharomyces pombe" [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0004534 "5'-3' exoribonuclease
activity" evidence=IGI] [GO:0005634 "nucleus" evidence=ISO;IGI;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006995 "cellular response to nitrogen starvation"
evidence=IMP] [GO:0030846 "termination of RNA polymerase II
transcription, poly(A)-coupled" evidence=ISO] [GO:0070317 "negative
regulation of G0 to G1 transition" evidence=IMP] InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239
PomBase:SPAC26A3.12c GO:GO:0005634 EMBL:CU329670 GO:GO:0070317
GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0006397 GO:GO:0003676
GO:GO:0000070 GO:GO:0006995 GO:GO:0006364 PDB:3FQD PDBsum:3FQD
GO:GO:0030846 eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOGENOM:HOG000205514 KO:K12619 EMBL:D17752 PIR:S43891
RefSeq:NP_594155.1 DIP:DIP-59743N STRING:P40848
EnsemblFungi:SPAC26A3.12c.1 GeneID:2542674 KEGG:spo:SPAC26A3.12c
OMA:INSEPAL OrthoDB:EOG43NBMS NextBio:20803722 Uniprot:P40848
Length = 991
Score = 972 (347.2 bits), Expect = 5.2e-167, Sum P(3) = 5.2e-167
Identities = 210/446 (47%), Positives = 275/446 (61%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVI-DGVKIPVDTSKPNPNGLEYDNLYLDMNGII 59
MGVPA +R L+ K+ V+ VIE + DG +I D S PNPNG+E DNLYLDMNGI+
Sbjct: 1 MGVPALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIV 60
Query: 60 HPCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXX 119
HPC HPEDRPAP T DE+ +F+Y DR+ MVRPR+LL++AIDGVAPRAKMNQQ
Sbjct: 61 HPCSHPEDRPAPETEDEMMVAVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRSRRF 120
Query: 120 XXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQV-FDSNVITPGTEFMAVLSIALQYYI 178
+ + + +DSN ITPGT FM L+ +L+YYI
Sbjct: 121 RSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYI 180
Query: 179 HLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIM 238
+LN+DP W ++ ILSDA+VPGEGEHKIM ++R QR P YDPNT H +YGLDADLIM
Sbjct: 181 INKLNSDPCWRNVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIM 240
Query: 239 LALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVP 298
L LATHE HF +LRE VF F Q G E + K D+ + VP
Sbjct: 241 LGLATHEPHFRVLREDVF--------F---QQGSTKKTKEERLGIK--RLDDVSETNKVP 287
Query: 299 -KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIR 357
KKP+ +L++ LREYL+ E +PN PF DLE +DD++F FFVGNDFLPH+P+L+IR
Sbjct: 288 VKKPFIWLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDIR 347
Query: 358 EGAINLLMAVYKKEFRALGGYLT-DGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHA 416
+GA+ L +++ +GGYLT DGS +L R E + AVG+ ED IF+ RL Q+
Sbjct: 348 DGAVERLTEIWRASLPHMGGYLTLDGSV-NLARAEVILSAVGNQEDDIFK---RLKQQED 403
Query: 417 ERIKREKAQARRGDDVEPLAQPDSLV 442
R + + + +R + E + D++V
Sbjct: 404 RRNENYRRRQQRESNQESESYVDNVV 429
Score = 621 (223.7 bits), Expect = 5.2e-167, Sum P(3) = 5.2e-167
Identities = 138/334 (41%), Positives = 193/334 (57%)
Query: 525 KSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHY 584
K+ +N D V+L EPG++ERYYE+KF+ +P+E E+ R + V Y GLCWV+ Y
Sbjct: 570 KAPDSTEENENTDTVRLYEPGYRERYYEQKFHI-SPDEPEKIR-EAVKHYVHGLCWVLLY 627
Query: 585 YYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEH 644
YY+G SW W+YPYHYAPFA+D KDL ++ FEL PFKP+ QLLGV P+AS + LPE
Sbjct: 628 YYQGCPSWTWYYPYHYAPFAADFKDLASIDVKFELNQPFKPYEQLLGVLPAASKNNLPEK 687
Query: 645 YRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEE 704
+ LMTD NS I DFYP +F +D+NGK++ WQG+A LPFIDE RLL+ V KI LTEEE
Sbjct: 688 LQTLMTDENSEIIDFYPENFTIDLNGKKFEWQGVALLPFIDENRLLNAVSKIYPQLTEEE 747
Query: 705 ARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGM---N 761
++RN + +LF+ HP+ E KQL K+R +L+ +++ G N
Sbjct: 748 SKRNEDGSTLLFISEHHPM------FSELVKQLYSKKRQGKPLKLSGKMAHGLFGKVNTN 801
Query: 762 GYISPCAGDPHPPVFRSPVASME--DIMGNQVLCAIYKLPDAH-KHVTRPPAGVIFPKKI 818
+ P P S A + I NQ + ++++P +H H + GV P ++
Sbjct: 802 DSVIPNVSVQCPIDVTSADALQKYGSIDDNQSISLVFEVPKSHFVHKSMLLRGVKMPNRV 861
Query: 819 VQLEDLKPAPVLWHEDSGRRPHEN---GRHNPHG 849
+ ED+ S RR + N G H +G
Sbjct: 862 LTPEDINQVRAE-RSFSSRRNNGNSYRGGHQSYG 894
Score = 69 (29.3 bits), Expect = 5.2e-167, Sum P(3) = 5.2e-167
Identities = 27/114 (23%), Positives = 38/114 (33%)
Query: 914 FSQPRTD--SYPAGHSQSSISAAQPPYDGGYSQHYASNTSHHPNRRYHPQYDRNSSGEHP 971
FS R + SY GH + + Q Y T+ N P + N +
Sbjct: 876 FSSRRNNGNSYRGGHQSYGVRRSYQSQSYSSRQSYTGVTNGFANGGVQPPWSGNGNFPRS 935
Query: 972 THLYNPSGIHQNGGPRYPPRPMGSTSSGANLYPPQGGYS-GYQSPAAGSFNQWG 1024
YN G H+ G R + N Y G GYQ + + N+ G
Sbjct: 936 NASYNSRGGHEGYGGRSRGGGYSNGPPAGNHYSSNRGKGYGYQRESYNNNNRNG 989
>UNIPROTKB|B4DZC3 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016235 "aggresome" evidence=IDA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016235
GO:GO:0016070 EMBL:AL158013 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOVERGEN:HBG036677 EMBL:AL117332 UniGene:Hs.255932
HGNC:HGNC:12836 ChiTaRS:XRN2 EMBL:AK302846 IPI:IPI01012839
SMR:B4DZC3 STRING:B4DZC3 Ensembl:ENST00000539513 Uniprot:B4DZC3
Length = 896
Score = 994 (355.0 bits), Expect = 9.5e-163, Sum P(2) = 9.5e-163
Identities = 215/460 (46%), Positives = 280/460 (60%)
Query: 55 MNGIIHPCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQ 114
MNGIIHPC HPED+PAP DE+ +F+YIDRLF +VRPR+LLYMAIDGVAPRAKMNQQ
Sbjct: 1 MNGIIHPCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQ 60
Query: 115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGTEFMAVLSIAL 174
LPP+ + FDSN ITPGTEFM L+ L
Sbjct: 61 RSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCL 120
Query: 175 QYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDA 234
+YYI RLNNDPGW+ + VILSDA+ PGEGEHKIM Y+R QR P +DPNT HCL G DA
Sbjct: 121 RYYIADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADA 180
Query: 235 DLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDE 294
DLIML LATHE +F+I+RE F P + C LC Q GH +CEG + K G+ DE D
Sbjct: 181 DLIMLGLATHEPNFTIIREE-FKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADS 239
Query: 295 VVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTL 354
+ + + FL + LREYL+ E + + PF D+E +DD++FMCFFVGNDFLPH+P+L
Sbjct: 240 LPCAEGEFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSL 299
Query: 355 EIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQR 414
EIRE AI+ L+ +YK GGYLT+ +L+RV+ + AVG ED IF+KR + +
Sbjct: 300 EIRENAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKR-KDDED 358
Query: 415 HAERIKREKAQARRGDDVEPLAQPDS-LVPV---SRFH-GSRLASGPSPSPYQQSECVGR 469
R ++EK + + D +P P L P SR GS++AS P + Y+ R
Sbjct: 359 SFRRRQKEKRKRMKRD--QPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEM-----R 411
Query: 470 LDNGKGTSGRPH-KVPRLSSGATIGAAIVEAENSFETDPQ 508
+ N S P+ S + +G +AE+S +++P+
Sbjct: 412 MQNNSSPSISPNTSFTSDGSPSPLGGIKRKAEDS-DSEPE 450
Score = 612 (220.5 bits), Expect = 9.5e-163, Sum P(2) = 9.5e-163
Identities = 141/319 (44%), Positives = 187/319 (58%)
Query: 525 KSDAFNSDN-PE-EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 582
K A +SD+ PE ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+
Sbjct: 439 KRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVL 496
Query: 583 HYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHAL 641
YYY+G SW+W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + L
Sbjct: 497 RYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFL 556
Query: 642 PEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLT 701
P +RKLM+DP+S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT
Sbjct: 557 PPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLT 616
Query: 702 EEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMN 761
EE RRNS+ D+LFV HPL I L Q E VEV PEL C G+
Sbjct: 617 PEETRRNSLGGDVLFVGKHHPLHDFILEL----YQTGSTEPVEVP----PEL--CH-GIQ 665
Query: 762 GYISPCAGDPHPP-VFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKIV 819
G S P + SPV + D+ N V+ +K P A ++ + V+ P
Sbjct: 666 GKFSLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDPQFAEDYIFK---AVMLPGARK 722
Query: 820 QLEDLKPAPVLWHEDSGRR 838
LKP+ W + S R
Sbjct: 723 PAAVLKPSD--WEKSSNGR 739
Score = 38 (18.4 bits), Expect = 4.1e-102, Sum P(2) = 4.1e-102
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 648 LMTDPNSPISDFYPTDFEVDMNGKRYSWQ 676
++ P + P+D+E NG+++ Q
Sbjct: 716 MLPGARKPAAVLKPSDWEKSSNGRQWKPQ 744
>SGD|S000005574 [details] [associations]
symbol:RAT1 "Nuclear 5' to 3' single-stranded RNA
exonuclease" species:4932 "Saccharomyces cerevisiae" [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0030846 "termination of RNA
polymerase II transcription, poly(A)-coupled" evidence=IMP]
[GO:0030847 "termination of RNA polymerase II transcription,
exosome-dependent" evidence=IGI;IMP] [GO:0006396 "RNA processing"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IGI;IMP] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006353 "DNA-dependent transcription, termination"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 SGD:S000005574
GO:GO:0005739 GO:GO:0005634 EMBL:BK006948 GO:GO:0006355
GO:GO:0006397 GO:GO:0003676 GO:GO:0006364 GO:GO:0030846
GO:GO:0071028 GO:GO:0030847 EMBL:L06011 eggNOG:COG5049
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 GeneTree:ENSGT00670000098098 KO:K12619
OrthoDB:EOG43NBMS EMBL:M95626 EMBL:Z11746 EMBL:S61567 EMBL:Z74956
PIR:S20126 RefSeq:NP_014691.1 ProteinModelPortal:Q02792 SMR:Q02792
DIP:DIP-6692N IntAct:Q02792 MINT:MINT-639904 STRING:Q02792
PaxDb:Q02792 PeptideAtlas:Q02792 EnsemblFungi:YOR048C GeneID:854213
KEGG:sce:YOR048C OMA:NMVRPRK NextBio:976071 Genevestigator:Q02792
GermOnline:YOR048C Uniprot:Q02792
Length = 1006
Score = 976 (348.6 bits), Expect = 1.6e-153, Sum P(3) = 1.6e-153
Identities = 202/444 (45%), Positives = 272/444 (61%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVP+F+RWL+ KYP +++ V+EE+P ++DGV +P+D S NPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVLEEQPQIVDGVILPLDYSASNPNG-ELDNLYLDMNGIVH 59
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXX 120
PC HPE++P P T DE+ +F+Y +R+ M RPRK+L MA+DGVAPRAKMNQQ
Sbjct: 60 PCSHPENKPPPETEDEMLLAVFEYTNRVLNMARPRKVLVMAVDGVAPRAKMNQQRARRFR 119
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXKLPPK-SDSQVFDSNVITPGTEFMAVLSIALQYYIH 179
+ + + +DSN ITPGT FM L+ AL+Y+
Sbjct: 120 SARDAQIENEAREEIMRQREEVGEIIDDAVRNKKTWDSNAITPGTPFMDKLAAALRYWTA 179
Query: 180 LRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIML 239
+L DPGW+ ++VI+SDA VPGEGEHKIM+++R QR P Y+PNT HC+YGLDADLI L
Sbjct: 180 FKLATDPGWKNLQVIISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLIFL 239
Query: 240 ALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPK 299
LATHE HF ILRE VF QD + +L + K +F +K + +
Sbjct: 240 GLATHEPHFKILREDVFA---QDN----RKRNNLKDTINMTEEEK--QFLQKQNS----E 286
Query: 300 KPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREG 359
+P+ +LHI LREYL E +P PF DLE +DD++FMCFF GNDFLPH+P L++RE
Sbjct: 287 QPFLWLHINVLREYLSAELWVPGLPFTFDLERAIDDWVFMCFFCGNDFLPHLPCLDVREN 346
Query: 360 AINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERI 419
+I++L+ ++K L Y+T +L VE +Q +GS E IF+ R R E
Sbjct: 347 SIDILLDIWKVVLPKLKTYMTCDGVLNLPSVETLLQHLGSREGDIFKTRHIQEARKKEAF 406
Query: 420 KREKAQAR--RGDDVEPLAQPDSL 441
+R KAQ +G D P + L
Sbjct: 407 ERRKAQKNMSKGQDRHPTVATEQL 430
Score = 520 (188.1 bits), Expect = 1.6e-153, Sum P(3) = 1.6e-153
Identities = 118/299 (39%), Positives = 166/299 (55%)
Query: 492 IGAAIVEAENSFETDPQXXXXXXXXXXXXXXRDKSDAFNSDNPEEDKVKLGEPGWKERYY 551
I A + + ENS ET K+ F++D + VKL EPG+ ERYY
Sbjct: 555 IVADVNDRENS-ETTEVSRDSPVHSTVNVSEGPKNGVFDTD----EFVKLFEPGYHERYY 609
Query: 552 EEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLD 611
KF+ TP++ E+ RKD+V Y EG+ WV+ YYY+G SW WFYPYHYAP A+D
Sbjct: 610 TAKFHV-TPQDIEQLRKDMVKCYIEGVAWVLMYYYQGCASWNWFYPYHYAPLATDFHGFS 668
Query: 612 QFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGK 671
I FE G PF P+ QL+ V P+AS HALP+ +R LM++P+S I DFYP +F +DMNGK
Sbjct: 669 HLEIKFEEGTPFLPYEQLMSVLPAASGHALPKIFRSLMSEPDSEIIDFYPEEFPIDMNGK 728
Query: 672 RYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHP----LSASI 727
+ SWQGIA LPFID+ RLL V+ L++ E RN +L + + S +
Sbjct: 729 KMSWQGIALLPFIDQDRLLTAVRAQYPLLSDAERARNIRGEPVLLISNKNANYERFSKKL 788
Query: 728 YTLDEHCKQLKIKERVEVKERLNPELSMCSDG--MNGYI-SPCAGDPHPPVFRSPVASM 783
Y+ + + + +K + K L+ +S +G +NG I P G P + + + M
Sbjct: 789 YSKENNNNNVVVKFQ-HFKSGLSGIVSKDVEGFELNGKIVCPIQGGSLPNLSTTLILKM 846
Score = 38 (18.4 bits), Expect = 1.6e-153, Sum P(3) = 1.6e-153
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 937 PYDGGYSQH-YASNTSHHPNRRYHPQYDRNSSGEHP 971
P GGY Y + S + + H Y RNS P
Sbjct: 916 PRTGGYRAFFYFAELSRNNVQPAH-NYGRNSYNSQP 950
>CGD|CAL0003816 [details] [associations]
symbol:RAT1 species:5476 "Candida albicans" [GO:0004534
"5'-3' exoribonuclease activity" evidence=IGI] [GO:0008017
"microtubule binding" evidence=IGI] [GO:0000150 "recombinase
activity" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0030846 "termination
of RNA polymerase II transcription, poly(A)-coupled" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0030847 "termination of RNA
polymerase II transcription, exosome-dependent" evidence=IEA]
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 CGD:CAL0003816 GO:GO:0005634 GO:GO:0006355
GO:GO:0006397 GO:GO:0003676 GO:GO:0008017 EMBL:AACQ01000005
EMBL:AACQ01000006 GO:GO:0006364 GO:GO:0006353 GO:GO:0000150
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
KO:K12619 RefSeq:XP_722750.1 RefSeq:XP_722895.1 STRING:Q5AMG5
GeneID:3635468 GeneID:3635686 KEGG:cal:CaO19.12150
KEGG:cal:CaO19.4681 Uniprot:Q5AMG5
Length = 968
Score = 1457 (517.9 bits), Expect = 4.0e-151, Sum P(2) = 4.0e-151
Identities = 373/1015 (36%), Positives = 513/1015 (50%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPA +RWL+ KYP +++ V+EEE I G K PNPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPALFRWLSRKYPKIISPVVEEEDHEIGGAKY----ENPNPNG-EIDNLYLDMNGIVH 55
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXX 120
PC HPE + P T DE+F +F Y DR+ +M RPRK+L +A+DGVAPRAKMNQQ
Sbjct: 56 PCSHPEHKKPPETEDEMFLDIFKYTDRVLMMARPRKVLMIAVDGVAPRAKMNQQRARRFR 115
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXKLPP--KSDSQVFDSNVITPGTEFMAVLSIALQYYI 178
+ K Q +DSN ITPGT FM L+ AL+Y++
Sbjct: 116 AAKDAELKAKQLEIEVQERELRGEIINDAIKGKKQ-WDSNAITPGTPFMDRLAEALRYWV 174
Query: 179 HLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIM 238
+L++DPGW ++VI+SDA VPGEGEHK+MS++R QR+ P YDPNT+HC+YGLDADLI
Sbjct: 175 AYKLSSDPGWANLQVIISDATVPGEGEHKLMSFIRSQRSDPQYDPNTKHCIYGLDADLIF 234
Query: 239 LALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVP 298
L LATHE HF +LRE VF QDK F K + + + GD V
Sbjct: 235 LGLATHEPHFRVLREDVFA--SQDKKFTI--------------KDQIADANSNGDTVAKE 278
Query: 299 -KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIR 357
KKP+ +LH+ LREYL E P F +LE +DD++F+CFF GNDFLPH+P+L++R
Sbjct: 279 DKKPFLWLHVNVLREYLQVELFTPRMSFPFELERAIDDWVFLCFFAGNDFLPHLPSLDVR 338
Query: 358 EGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAE 417
+ I+ L+ +K+ L Y+T K +L+ VE + + E IF+ + QR E
Sbjct: 339 DNGIDTLVQCWKRSLPILKDYVTCDGKLNLKSVEVLMSNLAYKESEIFKNKHAAEQRREE 398
Query: 418 RIKREK--------------AQARRGDDVEPLAQPDSLVPVSRFHGSRLA--SGPSPSPY 461
KR K +Q +G D PL D +P+ G + + + S
Sbjct: 399 NNKRRKLAQEQERALKRVYSSQVSKGKDKAPLTA-DVNMPLMDTSGQNVEGYANLTNSDI 457
Query: 462 QQSECVGRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQXXXXXXXXXXXXX 521
Q+ + N S ++ +L +V+ + + ++
Sbjct: 458 VQNRAILTKAN-LANSDAAAELKKLIDSKKTQVTVVQDQIATDSSANSETTTSESELEEI 516
Query: 522 XRDKSDAFNSDNPEEDK------VKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYT 575
D S + PEEDK +KL EPG+ +RYYE KF+ ++ EE E+T++DVV Y
Sbjct: 517 QSDNSLKRKLE-PEEDKQTQSDDIKLWEPGYNKRYYEAKFHYQSDEEIEQTKRDVVRHYV 575
Query: 576 EGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQF---NISFELGHPFKPFNQLLGV 632
EG+ WV YYY+G SW W++PYHYAPFA+D +L++ + F+LG PF+PF QL+ V
Sbjct: 576 EGIAWVALYYYQGCPSWNWYFPYHYAPFAADFTNLEELFPEGVKFKLGEPFRPFEQLMSV 635
Query: 633 FPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDE 692
P+AS H LP+ +R LM++P+S I DFYP +FE+DMNGK+ SWQGI LPFIDE RLLD
Sbjct: 636 LPAASGHTLPQVFRDLMSNPDSEIIDFYPEEFEIDMNGKKMSWQGIPLLPFIDEKRLLDA 695
Query: 693 VKKIEHTLTEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPE 752
V+K LT +E RN+ LF+ P + + E K K E EV
Sbjct: 696 VQKKYELLTPDEKSRNTNKEAELFI---SPANKNFSKFSE--KLYKENEN-EVT------ 743
Query: 753 LSMCSDGMNGYISPCAGDPHPP-VFRSPVAS--MEDIMGNQVLCAIYKLPDAHKHVTRPP 809
G++G I G +P VF P+ M ++ + AIY P +
Sbjct: 744 FKYAKSGLSGKIFKL-GTFNPEGVFNFPLNEGYMPNVNNSDYFQAIYHFPKTKTGKSMIL 802
Query: 810 AGVIFPKKIVQLEDLKPAPVLWHEDSGRRPHENGRHNPHGTISGRQL---GEAAHRLVAN 866
G I P + D +L+ D GR N T+ G A L
Sbjct: 803 NGHIAPLPALTTADKND--LLYQLDKFNNRRNGGRFN--STLDNSDYINKGPAGKELYKT 858
Query: 867 SLQHMKVDRNGYGDRM----HGXXXXXXXXXXXXXXXXXQE-YG---VYDQ-GYNRFSQP 917
M+ R GY + +G Q+ YG Y+Q GY Q
Sbjct: 859 --YSMR--RGGYRSYLQYLTNGHHPDHQSQNSQYLSYGQQKPYGGQGSYNQQGYYN-QQG 913
Query: 918 RTDSYPAGHSQSSISAAQPPYDGGYSQHYASNTSHHPNRRYHPQYDRNS-SGEHP 971
R + ++Q + Q Y+ Y SNT N + + Q NS SG P
Sbjct: 914 RYNQQGNNYNQQGRYSQQSQYN-----QYRSNTQRFNNNQNYNQSSNNSRSGYLP 963
Score = 39 (18.8 bits), Expect = 4.0e-151, Sum P(2) = 4.0e-151
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 1011 GYQSP--AAGSFNQWGGANQ 1028
G Q P GS+NQ G NQ
Sbjct: 892 GQQKPYGGQGSYNQQGYYNQ 911
>UNIPROTKB|Q5AMG5 [details] [associations]
symbol:RAT1 "5'-3' exoribonuclease 2" species:237561
"Candida albicans SC5314" [GO:0000150 "recombinase activity"
evidence=IGI] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IGI] [GO:0006310 "DNA recombination" evidence=IGI]
[GO:0008017 "microtubule binding" evidence=IGI] InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 CGD:CAL0003816
GO:GO:0005634 GO:GO:0006355 GO:GO:0006397 GO:GO:0003676
GO:GO:0008017 EMBL:AACQ01000005 EMBL:AACQ01000006 GO:GO:0006364
GO:GO:0006353 GO:GO:0000150 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 KO:K12619 RefSeq:XP_722750.1
RefSeq:XP_722895.1 STRING:Q5AMG5 GeneID:3635468 GeneID:3635686
KEGG:cal:CaO19.12150 KEGG:cal:CaO19.4681 Uniprot:Q5AMG5
Length = 968
Score = 1457 (517.9 bits), Expect = 4.0e-151, Sum P(2) = 4.0e-151
Identities = 373/1015 (36%), Positives = 513/1015 (50%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVPA +RWL+ KYP +++ V+EEE I G K PNPNG E DNLYLDMNGI+H
Sbjct: 1 MGVPALFRWLSRKYPKIISPVVEEEDHEIGGAKY----ENPNPNG-EIDNLYLDMNGIVH 55
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXX 120
PC HPE + P T DE+F +F Y DR+ +M RPRK+L +A+DGVAPRAKMNQQ
Sbjct: 56 PCSHPEHKKPPETEDEMFLDIFKYTDRVLMMARPRKVLMIAVDGVAPRAKMNQQRARRFR 115
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXKLPP--KSDSQVFDSNVITPGTEFMAVLSIALQYYI 178
+ K Q +DSN ITPGT FM L+ AL+Y++
Sbjct: 116 AAKDAELKAKQLEIEVQERELRGEIINDAIKGKKQ-WDSNAITPGTPFMDRLAEALRYWV 174
Query: 179 HLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIM 238
+L++DPGW ++VI+SDA VPGEGEHK+MS++R QR+ P YDPNT+HC+YGLDADLI
Sbjct: 175 AYKLSSDPGWANLQVIISDATVPGEGEHKLMSFIRSQRSDPQYDPNTKHCIYGLDADLIF 234
Query: 239 LALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVP 298
L LATHE HF +LRE VF QDK F K + + + GD V
Sbjct: 235 LGLATHEPHFRVLREDVFA--SQDKKFTI--------------KDQIADANSNGDTVAKE 278
Query: 299 -KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIR 357
KKP+ +LH+ LREYL E P F +LE +DD++F+CFF GNDFLPH+P+L++R
Sbjct: 279 DKKPFLWLHVNVLREYLQVELFTPRMSFPFELERAIDDWVFLCFFAGNDFLPHLPSLDVR 338
Query: 358 EGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAE 417
+ I+ L+ +K+ L Y+T K +L+ VE + + E IF+ + QR E
Sbjct: 339 DNGIDTLVQCWKRSLPILKDYVTCDGKLNLKSVEVLMSNLAYKESEIFKNKHAAEQRREE 398
Query: 418 RIKREK--------------AQARRGDDVEPLAQPDSLVPVSRFHGSRLA--SGPSPSPY 461
KR K +Q +G D PL D +P+ G + + + S
Sbjct: 399 NNKRRKLAQEQERALKRVYSSQVSKGKDKAPLTA-DVNMPLMDTSGQNVEGYANLTNSDI 457
Query: 462 QQSECVGRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQXXXXXXXXXXXXX 521
Q+ + N S ++ +L +V+ + + ++
Sbjct: 458 VQNRAILTKAN-LANSDAAAELKKLIDSKKTQVTVVQDQIATDSSANSETTTSESELEEI 516
Query: 522 XRDKSDAFNSDNPEEDK------VKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYT 575
D S + PEEDK +KL EPG+ +RYYE KF+ ++ EE E+T++DVV Y
Sbjct: 517 QSDNSLKRKLE-PEEDKQTQSDDIKLWEPGYNKRYYEAKFHYQSDEEIEQTKRDVVRHYV 575
Query: 576 EGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQF---NISFELGHPFKPFNQLLGV 632
EG+ WV YYY+G SW W++PYHYAPFA+D +L++ + F+LG PF+PF QL+ V
Sbjct: 576 EGIAWVALYYYQGCPSWNWYFPYHYAPFAADFTNLEELFPEGVKFKLGEPFRPFEQLMSV 635
Query: 633 FPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDE 692
P+AS H LP+ +R LM++P+S I DFYP +FE+DMNGK+ SWQGI LPFIDE RLLD
Sbjct: 636 LPAASGHTLPQVFRDLMSNPDSEIIDFYPEEFEIDMNGKKMSWQGIPLLPFIDEKRLLDA 695
Query: 693 VKKIEHTLTEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPE 752
V+K LT +E RN+ LF+ P + + E K K E EV
Sbjct: 696 VQKKYELLTPDEKSRNTNKEAELFI---SPANKNFSKFSE--KLYKENEN-EVT------ 743
Query: 753 LSMCSDGMNGYISPCAGDPHPP-VFRSPVAS--MEDIMGNQVLCAIYKLPDAHKHVTRPP 809
G++G I G +P VF P+ M ++ + AIY P +
Sbjct: 744 FKYAKSGLSGKIFKL-GTFNPEGVFNFPLNEGYMPNVNNSDYFQAIYHFPKTKTGKSMIL 802
Query: 810 AGVIFPKKIVQLEDLKPAPVLWHEDSGRRPHENGRHNPHGTISGRQL---GEAAHRLVAN 866
G I P + D +L+ D GR N T+ G A L
Sbjct: 803 NGHIAPLPALTTADKND--LLYQLDKFNNRRNGGRFN--STLDNSDYINKGPAGKELYKT 858
Query: 867 SLQHMKVDRNGYGDRM----HGXXXXXXXXXXXXXXXXXQE-YG---VYDQ-GYNRFSQP 917
M+ R GY + +G Q+ YG Y+Q GY Q
Sbjct: 859 --YSMR--RGGYRSYLQYLTNGHHPDHQSQNSQYLSYGQQKPYGGQGSYNQQGYYN-QQG 913
Query: 918 RTDSYPAGHSQSSISAAQPPYDGGYSQHYASNTSHHPNRRYHPQYDRNS-SGEHP 971
R + ++Q + Q Y+ Y SNT N + + Q NS SG P
Sbjct: 914 RYNQQGNNYNQQGRYSQQSQYN-----QYRSNTQRFNNNQNYNQSSNNSRSGYLP 963
Score = 39 (18.8 bits), Expect = 4.0e-151, Sum P(2) = 4.0e-151
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 1011 GYQSP--AAGSFNQWGGANQ 1028
G Q P GS+NQ G NQ
Sbjct: 892 GQQKPYGGQGSYNQQGYYNQ 911
>DICTYBASE|DDB_G0269922 [details] [associations]
symbol:xrn2 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158
SMART:SM00343 dictyBase:DDB_G0269922 GO:GO:0005634
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 KO:K12619 RefSeq:XP_646407.1
STRING:Q55CS4 EnsemblProtists:DDB0237528 GeneID:8617364
KEGG:ddi:DDB_G0269922 InParanoid:Q55CS4 Uniprot:Q55CS4
Length = 1190
Score = 939 (335.6 bits), Expect = 2.4e-140, Sum P(3) = 2.4e-140
Identities = 193/431 (44%), Positives = 265/431 (61%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MG+PAF+RWL +KY ++ + E P DG + VD + PNPNG EYDNLYLDMNGIIH
Sbjct: 1 MGIPAFFRWLIDKYGGLIQETTE--PREADGGRSVVDFTTPNPNG-EYDNLYLDMNGIIH 57
Query: 61 PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXX 120
PC HPE P P + +++ Q +++Y+D LF ++RPRKL+YMA+DGVAPRAKMNQQ
Sbjct: 58 PCAHPEKGPKPKSIEDMIQSIYEYLDLLFAIIRPRKLIYMAVDGVAPRAKMNQQRTRRFR 117
Query: 121 XXXXXXXXXXXXXXX--------XXXXXXXXXKLPPKSDSQVFDSNVITPGTEFMAVLSI 172
+ K + FDSN ITPGT FM ++
Sbjct: 118 AALDSRLDKDKEAALWRERIYDGLATQQEYEQYMEEKKNKFKFDSNCITPGTLFMDRVAE 177
Query: 173 ALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGL 232
+L+ Y+ +L DP W+ +K+I+SDA+VPGEGEHKIM YVR QR P YDPN +H +YGL
Sbjct: 178 SLRTYVAEKLTTDPAWKDVKIIISDASVPGEGEHKIMDYVRHQRAQPDYDPNLKHIIYGL 237
Query: 233 DADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKG 292
DADLIML LATHEV+F ILRE + P + C C + GHLA C+ E D+
Sbjct: 238 DADLIMLGLATHEVNFDILREFI-QPIARGVCHKCHKKGHLAIECKE-------EVDDSV 289
Query: 293 DEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMP 352
+ +V K YQ LH+ L+EYL+ E ++ + PF D++ IVDDFIF+CFFVGNDFLPH+P
Sbjct: 290 KDFLV--KNYQILHLHLLKEYLELETKV-STPFGFDIDRIVDDFIFLCFFVGNDFLPHLP 346
Query: 353 TLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLH 412
LEI++GAI+ ++ YK+ + YL + + R+ A+ E+ FQ++
Sbjct: 347 NLEIKDGAIDRVIKCYKELLPSFDDYLVSNGEVNFPRLSQIFVALTKGEEESFQRKI--- 403
Query: 413 QRHAERIKREK 423
Q+ A+ +K+ +
Sbjct: 404 QKDAQILKKRQ 414
Score = 414 (150.8 bits), Expect = 2.4e-140, Sum P(3) = 2.4e-140
Identities = 80/187 (42%), Positives = 113/187 (60%)
Query: 539 VKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPY 598
+K E GW++RYY+ F E E+ K + Y EGL WV+ YY++G SW W+YPY
Sbjct: 607 IKYSEEGWRDRYYQSCFQV----ENEDDIKQICKSYVEGLVWVLKYYFKGCSSWGWYYPY 662
Query: 599 HYAPFASDL-KDLDQFNI-SFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMT-----D 651
HY+P+ +D+ K DQF +E+G PFKPFNQL+ V P AS +P+ Y+KLM +
Sbjct: 663 HYSPYITDISKFFDQFEYPQYEMGEPFKPFNQLMSVLPPASCQFVPKPYQKLMGISVDGE 722
Query: 652 P--NSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNS 709
P SPI +FYP F +D ++G+ LPFI+ +LL + K E LTEEE RN+
Sbjct: 723 PVEESPIIEFYPRAFRIDRGPTEPLYKGVCLLPFINSIKLLKTISKTEPLLTEEEVDRNT 782
Query: 710 IMADMLF 716
+ D++F
Sbjct: 783 LGHDLMF 789
Score = 56 (24.8 bits), Expect = 2.4e-140, Sum P(3) = 2.4e-140
Identities = 21/129 (16%), Positives = 52/129 (40%)
Query: 908 DQGYNRFSQPRTDSYPAGHSQSSISAAQPPYDGGYSQHY--ASNTSHHPNRRYHPQYDR- 964
+ YN ++ + ++ ++ + Y+ Y+ +Y +N ++ N Y+ Y+
Sbjct: 1001 NSNYNNYNNSYNNGNNYNNNNNNGNGYNSNYNNNYNNNYNNGNNNGNNYNNNYNNNYNNG 1060
Query: 965 NSSG--EHPTHLYNPS--GIHQNGGPRYPPRPMGSTSSGANLYPPQGGYSGYQSPAAGSF 1020
N++G + + YN + G + N + ++ N Y ++ P+
Sbjct: 1061 NNNGFNNNNNNNYNNNNYGGYDNNNGFNNNNNNNNNNNNNNSY--NYDFNNLNDPSLIDI 1118
Query: 1021 NQWGGANQS 1029
N +GG +
Sbjct: 1119 NNYGGGGNN 1127
Score = 51 (23.0 bits), Expect = 8.1e-140, Sum P(3) = 8.1e-140
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 910 GYNRFSQPRTDSYPAGHSQSSISAAQPPYDGGYSQHYASNTSHHPNRRYHPQYDRNSSGE 969
GYNRF+ +Y ++ + + + + +N +++ N Y+ + N++
Sbjct: 917 GYNRFNN---QNYNNNRYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNYNNYNNNNN 973
Query: 970 HPTHLYNPSGIHQNG 984
+ + YN +G + NG
Sbjct: 974 YKNNNYNNNG-NYNG 987
Score = 50 (22.7 bits), Expect = 1.0e-139, Sum P(3) = 1.0e-139
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 938 YDGGYSQHYASNTSHHPNRRYHPQYDR--NSSGEHPTHLYNPSGIHQNGGPRYPPRPMGS 995
Y+G S +Y +N +++ N Y+ Y+ N+ + + N +G + N Y
Sbjct: 985 YNGNNSNNYNNNNNYN-NSNYN-NYNNSYNNGNNYNNNNNNGNGYNSNYNNNYNNNYNNG 1042
Query: 996 TSSGAN 1001
++G N
Sbjct: 1043 NNNGNN 1048
Score = 47 (21.6 bits), Expect = 2.1e-139, Sum P(3) = 2.1e-139
Identities = 19/92 (20%), Positives = 39/92 (42%)
Query: 926 HSQSSISAAQPPYDGGYSQHYASNTSHHPNRRYHPQYDRN-SSGEHPTHLYNPS--GIHQ 982
++ S+ + Y+ G + + +N + N Y+ Y+ N ++G + + YN + +
Sbjct: 999 YNNSNYNNYNNSYNNGNNYNNNNNNGNGYNSNYNNNYNNNYNNGNNNGNNYNNNYNNNYN 1058
Query: 983 NGGPRYPPRPMGSTSSGANLYPPQGGYSGYQS 1014
NG G ++ N Y Y GY +
Sbjct: 1059 NGNNN------GFNNNNNNNYN-NNNYGGYDN 1083
>POMBASE|SPAC17A5.14 [details] [associations]
symbol:exo2 "exonuclease II Exo2" species:4896
"Schizosaccharomyces pombe" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0000741
"karyogamy" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IDA]
[GO:0004540 "ribonuclease activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005874 "microtubule" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0006402 "mRNA catabolic process"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0004523 "ribonuclease H activity" evidence=IDA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 PomBase:SPAC17A5.14 GO:GO:0005829 GO:GO:0048471
EMBL:CU329670 GO:GO:0000184 GenomeReviews:CU329670_GR GO:GO:0000287
GO:GO:0003723 GO:GO:0000932 GO:GO:0006402 GO:GO:0005874
GO:GO:0006364 GO:GO:0000741 eggNOG:COG5049 KO:K12618 OMA:CKQRKSN
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534 EMBL:L35232
PIR:S78457 RefSeq:NP_593482.1 STRING:P40383
EnsemblFungi:SPAC17A5.14.1 GeneID:2542204 KEGG:spo:SPAC17A5.14
HOGENOM:HOG000160331 OrthoDB:EOG4PP1R0 NextBio:20803274
Uniprot:P40383
Length = 1328
Score = 515 (186.3 bits), Expect = 8.7e-108, Sum P(4) = 8.7e-108
Identities = 105/220 (47%), Positives = 135/220 (61%)
Query: 47 EYDNLYLDMNGIIHPCFHPEDRPA--PTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDG 104
E+DNLYLDMNGI+H C H D + P +E++ +F+YI+ LF ++P+KLLYMA+DG
Sbjct: 28 EFDNLYLDMNGILHNCTHKNDDHSSPPLPEEEMYIAIFNYIEHLFEKIKPKKLLYMAVDG 87
Query: 105 VAPRAKMNQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGT 164
APRAKMNQQ P+ FDSN ITPGT
Sbjct: 88 CAPRAKMNQQRSRRFRTAKDAHDARLKAERNGEDF--------PEEQ---FDSNCITPGT 136
Query: 165 EFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPN 224
FM +S L Y+IH ++ ND W+ I+VI S + PGEGEHKIM Y+R Q+ P Y+PN
Sbjct: 137 TFMERVSRQLYYFIHKKVTNDSQWQNIEVIFSGHDCPGEGEHKIMEYIRTQKAQPSYNPN 196
Query: 225 TRHCLYGLDADLIMLALATHEVHFSILRE-VVFTPGQQDK 263
TRHCLYGLDADLIML L +H+ HF +LRE V F P +++
Sbjct: 197 TRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGPASRNR 236
Score = 422 (153.6 bits), Expect = 8.7e-108, Sum P(4) = 8.7e-108
Identities = 86/196 (43%), Positives = 115/196 (58%)
Query: 524 DKSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMH 583
++ A N E+D ++ WK+ YY K +E E K + RY EGL WV+
Sbjct: 479 NEEQALKEKNVEKDFIQ-----WKDDYYRSKVGFSYYDE--EALKAMAERYVEGLQWVLF 531
Query: 584 YYYEGVCSWQWFYPYHYAPFASD-LKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALP 642
YYY G SW W+Y YH+AP SD LK LD I F++G PF+PF QL+ V P+ S +P
Sbjct: 532 YYYRGCQSWGWYYNYHFAPKISDVLKGLD-VKIDFKMGTPFRPFEQLMAVLPARSQALVP 590
Query: 643 EHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTE 702
+R LM + SPI DFYP +F +D NGK SW+ + +PFIDE RL+D + + LTE
Sbjct: 591 PCFRDLMVNSESPIIDFYPENFALDQNGKTASWEAVVIIPFIDETRLIDALASKDKFLTE 650
Query: 703 EEARRNSIMADMLFVL 718
EE +RNS A +F L
Sbjct: 651 EERKRNSFNAPTVFSL 666
Score = 237 (88.5 bits), Expect = 8.7e-108, Sum P(4) = 8.7e-108
Identities = 46/107 (42%), Positives = 70/107 (65%)
Query: 302 YQFLHIWTLREYLDYEFRIPNPPF--EIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREG 359
+ LH+ LREYL++EF+ F + DLE I+DDFI + FFVGNDFLPH+P L I EG
Sbjct: 245 FYLLHLSLLREYLEFEFQECRSTFTFKYDLEKILDDFILLAFFVGNDFLPHLPGLHINEG 304
Query: 360 AINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 406
A+ L+ ++YKK + GGY+ + ++ R+E + + ++E IF+
Sbjct: 305 ALALMFSIYKKVMPSAGGYINEKGVINMARLELILLELENFEKEIFK 351
Score = 77 (32.2 bits), Expect = 8.7e-108, Sum P(4) = 8.7e-108
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPV 27
MG+P F+RW++E+YPL + +IE + +
Sbjct: 1 MGIPKFFRWMSERYPLC-SQLIENDRI 26
>MGI|MGI:891964 [details] [associations]
symbol:Xrn1 "5'-3' exoribonuclease 1" species:10090 "Mus
musculus" [GO:0000723 "telomere maintenance" evidence=NAS]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0007126 "meiosis" evidence=NAS]
[GO:0007569 "cell aging" evidence=NAS] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=ISO]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 MGI:MGI:891964 GO:GO:0007126 GO:GO:0003677
GO:GO:0003723 GO:GO:0006396 GO:GO:0000932 GO:GO:0000723
GO:GO:0071044 GO:GO:0007569 CTD:54464 eggNOG:COG5049
HOVERGEN:HBG094164 KO:K12618 OrthoDB:EOG49S65H InterPro:IPR027073
PANTHER:PTHR12341 EMBL:D88026 EMBL:X91617 EMBL:AK142311
EMBL:AK162848 EMBL:AK169840 IPI:IPI00129132 IPI:IPI00668938
IPI:IPI00677614 PIR:T30174 PIR:T30175 PIR:T30244 RefSeq:NP_036046.2
UniGene:Mm.291179 ProteinModelPortal:P97789 SMR:P97789
STRING:P97789 PhosphoSite:P97789 PaxDb:P97789 PRIDE:P97789
GeneID:24127 KEGG:mmu:24127 UCSC:uc009rbw.1 UCSC:uc009rbx.1
HOGENOM:HOG000154879 InParanoid:P97789 NextBio:304159
CleanEx:MM_XRN1 Genevestigator:P97789 GermOnline:ENSMUSG00000032410
GO:GO:0004534 Uniprot:P97789
Length = 1719
Score = 506 (183.2 bits), Expect = 4.2e-107, Sum P(5) = 4.2e-107
Identities = 101/217 (46%), Positives = 135/217 (62%)
Query: 47 EYDNLYLDMNGIIHPCFHPEDRPAPTTF--DEVFQCMFDYIDRLFVMVRPRKLLYMAIDG 104
E+DNLYLDMNGIIH C HP D D++F +F Y++ LF +++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGT 164
VAPRAKMNQQ LP ++ FDSN ITPGT
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGET-------LPTEAR---FDSNCITPGT 137
Query: 165 EFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPN 224
EFMA L L+Y+++++++ D W+ + + S PGEGEHKIM ++R ++ P +DPN
Sbjct: 138 EFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPN 197
Query: 225 TRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQ 261
TRHCLYGLDADLIML L +HE HFS+LRE V G++
Sbjct: 198 TRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKK 234
Score = 450 (163.5 bits), Expect = 4.2e-107, Sum P(5) = 4.2e-107
Identities = 79/182 (43%), Positives = 111/182 (60%)
Query: 527 DAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYY 586
D F + ++D + +K YY K + E + Y + + W++HYYY
Sbjct: 414 DNFEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSD--EFLANQAACYVQAIQWILHYYY 471
Query: 587 EGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYR 646
GV SW W+YPYHYAPF SD++ + I FELG PFKPF QLL V PSAS + LP Y+
Sbjct: 472 HGVQSWSWYYPYHYAPFLSDIRSISTLKIHFELGKPFKPFEQLLAVLPSASKNLLPTCYQ 531
Query: 647 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 706
LMT +SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ H+L +EE +
Sbjct: 532 HLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDETRLLEAMETCNHSLKKEERK 591
Query: 707 RN 708
RN
Sbjct: 592 RN 593
Score = 206 (77.6 bits), Expect = 4.2e-107, Sum P(5) = 4.2e-107
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 290 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFMCFFVGND 346
+K V P++ + LH+ +REY+DYEF F+ D+E I+DD+I M F VGND
Sbjct: 233 KKTQRVCAPEETTFHLLHLSLMREYIDYEFSALKEKITFKYDIEKIIDDWILMGFLVGND 292
Query: 347 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 406
F+PH+P L I A+ LL Y LGGY+ + +L R E ++ + ++ F
Sbjct: 293 FIPHLPHLHINHDALPLLYGTYIAILPELGGYINESGHLNLPRFERYLVKLSDFDREHFS 352
Query: 407 K 407
+
Sbjct: 353 E 353
Score = 83 (34.3 bits), Expect = 4.2e-107, Sum P(5) = 4.2e-107
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPV 27
MGVP FYRW++E+YP + ++V++E +
Sbjct: 1 MGVPKFYRWISERYPCL-SEVVKEHQI 26
Score = 53 (23.7 bits), Expect = 4.2e-107, Sum P(5) = 4.2e-107
Identities = 20/78 (25%), Positives = 35/78 (44%)
Query: 751 PELSMCSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYK-LPDAHK--HV-- 805
P +S CS +G++ P P + V + G+ C I++ L A K H+
Sbjct: 1193 PSVSHCSAAPSGHLGGLNHSPQSPFLPTQVPTK----GDDEFCNIWQSLQGAGKTQHLQP 1248
Query: 806 TRPPAGVIFPKKIVQLED 823
T G + P++I Q+ +
Sbjct: 1249 TVQEKGAVLPQEISQVTE 1266
Score = 43 (20.2 bits), Expect = 4.6e-106, Sum P(5) = 4.6e-106
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 788 GNQVLCAIYKLPDAHKHVTRPPAG 811
GNQ L AI K + H + P+G
Sbjct: 1181 GNQKLTAIVKPQPSVSHCSAAPSG 1204
Score = 37 (18.1 bits), Expect = 4.3e-64, Sum P(5) = 4.3e-64
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 449 GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH 481
G LA S Y S G + G+G+ PH
Sbjct: 914 GYVLAGRLGVSGYLVSRFTGSIFIGRGSRRNPH 946
>RGD|1309713 [details] [associations]
symbol:Xrn1 "5'-3' exoribonuclease 1" species:10116 "Rattus
norvegicus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;ISO] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005794
"Golgi apparatus" evidence=IEA;ISO] [GO:0005886 "plasma membrane"
evidence=IEA;ISO] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0016075 "rRNA catabolic process"
evidence=IEA;ISO] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA;ISO] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA;ISO] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA;ISO] InterPro:IPR004859 InterPro:IPR016494
Pfam:PF03159 PIRSF:PIRSF006743 RGD:1309713 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 OrthoDB:EOG49S65H
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
IPI:IPI00373532 Ensembl:ENSRNOT00000014481 UCSC:RGD:1309713
Uniprot:D4ABN8
Length = 1723
Score = 506 (183.2 bits), Expect = 8.8e-107, Sum P(5) = 8.8e-107
Identities = 101/217 (46%), Positives = 135/217 (62%)
Query: 47 EYDNLYLDMNGIIHPCFHPEDRPAPTTF--DEVFQCMFDYIDRLFVMVRPRKLLYMAIDG 104
E+DNLYLDMNGIIH C HP D D++F +F Y++ LF +++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGT 164
VAPRAKMNQQ LP ++ FDSN ITPGT
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGET-------LPTEAR---FDSNCITPGT 137
Query: 165 EFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPN 224
EFMA L L+Y+++++++ D W+ + + S PGEGEHKIM ++R ++ P +DPN
Sbjct: 138 EFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPN 197
Query: 225 TRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQ 261
TRHCLYGLDADLIML L +HE HFS+LRE V G++
Sbjct: 198 TRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKK 234
Score = 452 (164.2 bits), Expect = 8.8e-107, Sum P(5) = 8.8e-107
Identities = 80/182 (43%), Positives = 111/182 (60%)
Query: 527 DAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYY 586
D F + ++D + +K YY K + E D Y + + W++HYYY
Sbjct: 414 DNFEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSD--EFLADQAACYVQAIQWILHYYY 471
Query: 587 EGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYR 646
GV SW W+YPYHYAPF SD++++ I FELG PFKPF QLL V PSAS LP Y+
Sbjct: 472 HGVQSWSWYYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPSASKTLLPTCYQ 531
Query: 647 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 706
LMT +SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ H+L +EE +
Sbjct: 532 HLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERK 591
Query: 707 RN 708
RN
Sbjct: 592 RN 593
Score = 206 (77.6 bits), Expect = 8.8e-107, Sum P(5) = 8.8e-107
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 290 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFMCFFVGND 346
+K V P++ + LH+ +REY+DYEF F+ D+E I+DD+I M F VGND
Sbjct: 233 KKTQRVCAPEETTFHLLHLSLMREYIDYEFSALKEKITFKYDIEKIIDDWILMGFLVGND 292
Query: 347 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 406
F+PH+P L I A+ LL Y LGGY+ + +L R E ++ + ++ F
Sbjct: 293 FIPHLPHLHINHDALPLLYGTYIAILPELGGYINESGHLNLPRFERYLVKLSDFDREHFS 352
Query: 407 K 407
+
Sbjct: 353 E 353
Score = 83 (34.3 bits), Expect = 8.8e-107, Sum P(5) = 8.8e-107
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPV 27
MGVP FYRW++E+YP + ++V++E +
Sbjct: 1 MGVPKFYRWISERYPCL-SEVVKEHQI 26
Score = 48 (22.0 bits), Expect = 8.8e-107, Sum P(5) = 8.8e-107
Identities = 26/105 (24%), Positives = 48/105 (45%)
Query: 751 PELSMCSDGMNGYISP--CAGDPHPPVFRSPVASMEDIMGNQVLCAIYK-LPDAHK--HV 805
P +S CS +N +S G H P + + G+ C I++ L + K H+
Sbjct: 1193 PAVSHCS--VNSSVSSGHMGGLNHSPQSLF-LPTQVPTKGDDEFCNIWQSLQGSGKIQHL 1249
Query: 806 --TRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPHENGRHNPH 848
T G + P++I Q+ + + +++ S R H+ +H+PH
Sbjct: 1250 QPTVQEKGAVLPQEISQVTESHKSG--FNDHSVR--HQQRKHDPH 1290
Score = 39 (18.8 bits), Expect = 7.6e-106, Sum P(5) = 7.6e-106
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 773 PPVFRSPVASM 783
PPVF P A+M
Sbjct: 1564 PPVFPQPTANM 1574
Score = 39 (18.8 bits), Expect = 1.6e-46, Sum P(3) = 1.6e-46
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 381 DGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQ 425
+GS P+ Q V S+ + Q HQR A R K++
Sbjct: 1667 EGS-PASSASSQATQPVSSHVETASQGHVVSHQRSAPSSSRRKSR 1710
Score = 37 (18.1 bits), Expect = 1.4e-63, Sum P(5) = 1.4e-63
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 449 GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH 481
G LA S Y S G + G+G+ PH
Sbjct: 914 GYVLAGRLGVSGYLVSRFTGSIFIGRGSRRNPH 946
>UNIPROTKB|Q8IZH2 [details] [associations]
symbol:XRN1 "5'-3' exoribonuclease 1" species:9606 "Homo
sapiens" [GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016075 "rRNA catabolic process" evidence=IMP] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP]
[GO:0071028 "nuclear mRNA surveillance" evidence=IMP] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005829
GO:GO:0005886 GO:GO:0005794 GO:GO:0010467 GO:GO:0003677
GO:GO:0003723 GO:GO:0045111 GO:GO:0090305 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0043928 GO:GO:0071028
ChiTaRS:XRN1 EMBL:AY137776 EMBL:AL133623 EMBL:BX640905
EMBL:CR627396 EMBL:CR749518 EMBL:BC039314 EMBL:BC048104
EMBL:AK096177 IPI:IPI00328115 IPI:IPI00657645 IPI:IPI00657805
PIR:T43461 RefSeq:NP_001036069.1 RefSeq:NP_061874.3
UniGene:Hs.435103 ProteinModelPortal:Q8IZH2 SMR:Q8IZH2
IntAct:Q8IZH2 STRING:Q8IZH2 PhosphoSite:Q8IZH2 DMDM:74714582
PaxDb:Q8IZH2 PRIDE:Q8IZH2 DNASU:54464 Ensembl:ENST00000264951
Ensembl:ENST00000392981 Ensembl:ENST00000463916 GeneID:54464
KEGG:hsa:54464 UCSC:uc003eus.3 UCSC:uc003euu.3 UCSC:uc003euw.3
CTD:54464 GeneCards:GC03M142025 HGNC:HGNC:30654 HPA:HPA035005
HPA:HPA035006 MIM:607994 neXtProt:NX_Q8IZH2 PharmGKB:PA134878471
eggNOG:COG5049 HOVERGEN:HBG094164 InParanoid:Q8IZH2 KO:K12618
OMA:CKQRKSN OrthoDB:EOG49S65H PhylomeDB:Q8IZH2 GenomeRNAi:54464
NextBio:56731 ArrayExpress:Q8IZH2 Bgee:Q8IZH2 CleanEx:HS_XRN1
Genevestigator:Q8IZH2 GermOnline:ENSG00000114127 InterPro:IPR027073
PANTHER:PTHR12341 Uniprot:Q8IZH2
Length = 1706
Score = 506 (183.2 bits), Expect = 9.9e-106, Sum P(4) = 9.9e-106
Identities = 101/217 (46%), Positives = 135/217 (62%)
Query: 47 EYDNLYLDMNGIIHPCFHPEDRPAPTTF--DEVFQCMFDYIDRLFVMVRPRKLLYMAIDG 104
E+DNLYLDMNGIIH C HP D D++F +F Y++ LF +++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGT 164
VAPRAKMNQQ LP ++ FDSN ITPGT
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGET-------LPTEAR---FDSNCITPGT 137
Query: 165 EFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPN 224
EFMA L L+Y+++++++ D W+ + + S PGEGEHKIM ++R ++ P +DPN
Sbjct: 138 EFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPN 197
Query: 225 TRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQ 261
TRHCLYGLDADLIML L +HE HFS+LRE V G++
Sbjct: 198 TRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKK 234
Score = 441 (160.3 bits), Expect = 9.9e-106, Sum P(4) = 9.9e-106
Identities = 77/182 (42%), Positives = 111/182 (60%)
Query: 527 DAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYY 586
D + ++D + +K YY K + + D Y + + W++HYYY
Sbjct: 414 DNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQWILHYYY 471
Query: 587 EGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYR 646
GV SW W+YPYHYAPF SD+ ++ I FELG PFKPF QLL V P+AS + LP Y+
Sbjct: 472 HGVQSWSWYYPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQ 531
Query: 647 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 706
LMT+ +SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ H+L +EE +
Sbjct: 532 HLMTNEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERK 591
Query: 707 RN 708
RN
Sbjct: 592 RN 593
Score = 210 (79.0 bits), Expect = 9.9e-106, Sum P(4) = 9.9e-106
Identities = 43/121 (35%), Positives = 67/121 (55%)
Query: 290 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFMCFFVGND 346
+K V P++ + LH+ +REY+DYEF + F+ D+E I+DD+I M F VGND
Sbjct: 233 KKTQRVCAPEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGND 292
Query: 347 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 406
F+PH+P L I A+ LL Y LGGY+ + +L R E ++ + ++ F
Sbjct: 293 FIPHLPHLHINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFS 352
Query: 407 K 407
+
Sbjct: 353 E 353
Score = 83 (34.3 bits), Expect = 9.9e-106, Sum P(4) = 9.9e-106
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPV 27
MGVP FYRW++E+YP + ++V++E +
Sbjct: 1 MGVPKFYRWISERYPCL-SEVVKEHQI 26
Score = 41 (19.5 bits), Expect = 6.3e-64, Sum P(4) = 6.3e-64
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 449 GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH 481
G LAS S Y S G + G+G+ PH
Sbjct: 914 GYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPH 946
>UNIPROTKB|E1C8R7 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0071044
"histone mRNA catabolic process" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 CTD:54464 KO:K12618
OMA:CKQRKSN InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 EMBL:AADN02024099 IPI:IPI00596046
RefSeq:XP_422596.3 UniGene:Gga.23111 Ensembl:ENSGALT00000004266
GeneID:424778 KEGG:gga:424778 Uniprot:E1C8R7
Length = 1736
Score = 512 (185.3 bits), Expect = 1.2e-105, Sum P(4) = 1.2e-105
Identities = 104/219 (47%), Positives = 137/219 (62%)
Query: 47 EYDNLYLDMNGIIHPCFHPEDRPAPTTF--DEVFQCMFDYIDRLFVMVRPRKLLYMAIDG 104
E+DNLYLDMNGIIH C HP D D++F +F Y++ LF +++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISEDKIFADIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGT 164
VAPRAKMNQQ LP ++ FDSN ITPGT
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGEI-------LPTEAR---FDSNCITPGT 137
Query: 165 EFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPN 224
EFMA L L+Y+++++++ D W+ I V LS PGEGEHKIM ++R ++ P +DPN
Sbjct: 138 EFMARLHEHLKYFVNMKISTDKSWQGITVYLSGHETPGEGEHKIMEFIRSEKAKPHHDPN 197
Query: 225 TRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDK 263
TRHCLYGLDADLIML L THE HF++LRE V G++ +
Sbjct: 198 TRHCLYGLDADLIMLGLTTHEAHFALLREEVRFGGKKSQ 236
Score = 437 (158.9 bits), Expect = 1.2e-105, Sum P(4) = 1.2e-105
Identities = 79/186 (42%), Positives = 113/186 (60%)
Query: 532 DNPEEDKVKLGE-PGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVC 590
D PE+D + E +K YY K + + + D Y + + W++HYYY GV
Sbjct: 417 DEPEDDDLFETEFRQYKRTYYMTKMGIEVVSD--DFLADQAECYVQAIQWILHYYYHGVQ 474
Query: 591 SWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMT 650
SW W+YPYHYAP+ SD++++ + I FELG PF PF QLL V P+AS LP Y+ LM
Sbjct: 475 SWSWYYPYHYAPYLSDIRNISELKIQFELGKPFMPFEQLLAVLPAASKDLLPRCYQHLMV 534
Query: 651 DPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSI 710
+SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ L EEE RRN
Sbjct: 535 SQDSPIIEYYPLDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMESCNKCLKEEEKRRNVH 594
Query: 711 MADMLF 716
A +++
Sbjct: 595 SACLMY 600
Score = 210 (79.0 bits), Expect = 1.2e-105, Sum P(4) = 1.2e-105
Identities = 42/121 (34%), Positives = 68/121 (56%)
Query: 290 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFR-IPNP-PFEIDLECIVDDFIFMCFFVGND 346
+K P++ + LH+ +REY+DYEF + + F+ D+E I+DD+I M F VGND
Sbjct: 233 KKSQRACAPEETTFHLLHLSLMREYIDYEFSPVKDKISFDYDIEKIIDDWILMGFLVGND 292
Query: 347 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 406
F+PH+P L I A+ LL Y LGGY+ + +L+R E ++ + ++ F
Sbjct: 293 FIPHLPHLHINHDALPLLYRTYMAILPELGGYINENGHLNLKRFEKYLTRLSDFDREHFS 352
Query: 407 K 407
+
Sbjct: 353 E 353
Score = 80 (33.2 bits), Expect = 1.2e-105, Sum P(4) = 1.2e-105
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPV 27
MGVP FYRW++E+YP + + V++E +
Sbjct: 1 MGVPKFYRWISERYPCL-SQVLKEHQI 26
Score = 42 (19.8 bits), Expect = 2.3e-64, Sum P(4) = 2.3e-64
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 429 GDDVEPLAQPDSLV-PVSRFHGSRLASGPSPSPYQQSECVGRLDNGKGTSGRPHKVPRLS 487
G D+E + S V V G + G + Y+Q++ + N ++G P P L
Sbjct: 1412 GSDLETRNEAKSHVNDVPASPGRQDCHGAALQ-YRQTKKMAAYMNNPHSTGGPQSTPALG 1470
Query: 488 SG 489
+G
Sbjct: 1471 TG 1472
Score = 41 (19.5 bits), Expect = 2.9e-64, Sum P(4) = 2.9e-64
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 452 LASGPSPSPYQQSECVGRLDNGKGTSGRPH 481
LAS S Y S G + G+G+ PH
Sbjct: 916 LASRLGVSGYLVSRFTGSIFIGRGSKKNPH 945
>UNIPROTKB|F6XNM6 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
EMBL:AAEX03013647 Ensembl:ENSCAFT00000012512 Uniprot:F6XNM6
Length = 1702
Score = 506 (183.2 bits), Expect = 3.3e-105, Sum P(4) = 3.3e-105
Identities = 101/217 (46%), Positives = 135/217 (62%)
Query: 47 EYDNLYLDMNGIIHPCFHPEDRPAPTTF--DEVFQCMFDYIDRLFVMVRPRKLLYMAIDG 104
E+DNLYLDMNGIIH C HP D D++F +F Y++ LF +++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGT 164
VAPRAKMNQQ LP ++ FDSN ITPGT
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGET-------LPTEAR---FDSNCITPGT 137
Query: 165 EFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPN 224
EFMA L L+Y+++++++ D W+ + + S PGEGEHKIM ++R ++ P +DPN
Sbjct: 138 EFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPN 197
Query: 225 TRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQ 261
TRHCLYGLDADLIML L +HE HFS+LRE V G++
Sbjct: 198 TRHCLYGLDADLIMLGLTSHETHFSLLREEVRFGGKK 234
Score = 443 (161.0 bits), Expect = 3.3e-105, Sum P(4) = 3.3e-105
Identities = 77/182 (42%), Positives = 111/182 (60%)
Query: 527 DAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYY 586
D + ++D + +K YY K + + D Y + + W++HYYY
Sbjct: 411 DNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQWILHYYY 468
Query: 587 EGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYR 646
GV SW W+YPYHYAPF SD++++ I FELG PFKPF QLL V P+AS + LP Y+
Sbjct: 469 HGVQSWSWYYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQ 528
Query: 647 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 706
LMT +SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ H+L +EE +
Sbjct: 529 HLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMEACNHSLKKEERK 588
Query: 707 RN 708
RN
Sbjct: 589 RN 590
Score = 203 (76.5 bits), Expect = 3.3e-105, Sum P(4) = 3.3e-105
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 290 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFMCFFVGND 346
+K V P++ + LH+ +REY+DYEF F+ D+E I+DD+I M F VGND
Sbjct: 233 KKTQRVCAPEETTFHLLHLSLMREYIDYEFSELKAKITFKYDIERIIDDWILMGFLVGND 292
Query: 347 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 406
F+PH+P L I A+ LL Y LGGY+ + +L R E ++ + ++ F
Sbjct: 293 FIPHLPHLHINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFS 352
Query: 407 K 407
+
Sbjct: 353 E 353
Score = 83 (34.3 bits), Expect = 3.3e-105, Sum P(4) = 3.3e-105
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPV 27
MGVP FYRW++E+YP + ++V++E +
Sbjct: 1 MGVPKFYRWISERYPCL-SEVVKEHQI 26
Score = 41 (19.5 bits), Expect = 3.3e-63, Sum P(4) = 3.3e-63
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 449 GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH 481
G LAS S Y S G + G+G+ PH
Sbjct: 911 GYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPH 943
Score = 37 (18.1 bits), Expect = 8.6e-63, Sum P(4) = 8.6e-63
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 412 HQRHAERIKRE-KAQARRGDDVEPLAQP 438
H+ ++ E + R D+ EP +QP
Sbjct: 1370 HKNEMKQFGNEVTVSSNRRDEYEPSSQP 1397
>UNIPROTKB|E2R2X2 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
InterPro:IPR027073 PANTHER:PTHR12341 Ensembl:ENSCAFT00000012512
Uniprot:E2R2X2
Length = 1729
Score = 506 (183.2 bits), Expect = 3.6e-105, Sum P(4) = 3.6e-105
Identities = 101/217 (46%), Positives = 135/217 (62%)
Query: 47 EYDNLYLDMNGIIHPCFHPEDRPAPTTF--DEVFQCMFDYIDRLFVMVRPRKLLYMAIDG 104
E+DNLYLDMNGIIH C HP D D++F +F Y++ LF +++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGT 164
VAPRAKMNQQ LP ++ FDSN ITPGT
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGET-------LPTEAR---FDSNCITPGT 137
Query: 165 EFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPN 224
EFMA L L+Y+++++++ D W+ + + S PGEGEHKIM ++R ++ P +DPN
Sbjct: 138 EFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPN 197
Query: 225 TRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQ 261
TRHCLYGLDADLIML L +HE HFS+LRE V G++
Sbjct: 198 TRHCLYGLDADLIMLGLTSHETHFSLLREEVRFGGKK 234
Score = 443 (161.0 bits), Expect = 3.6e-105, Sum P(4) = 3.6e-105
Identities = 77/182 (42%), Positives = 111/182 (60%)
Query: 527 DAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYY 586
D + ++D + +K YY K + + D Y + + W++HYYY
Sbjct: 414 DNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQWILHYYY 471
Query: 587 EGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYR 646
GV SW W+YPYHYAPF SD++++ I FELG PFKPF QLL V P+AS + LP Y+
Sbjct: 472 HGVQSWSWYYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQ 531
Query: 647 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 706
LMT +SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ H+L +EE +
Sbjct: 532 HLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMEACNHSLKKEERK 591
Query: 707 RN 708
RN
Sbjct: 592 RN 593
Score = 203 (76.5 bits), Expect = 3.6e-105, Sum P(4) = 3.6e-105
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 290 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFMCFFVGND 346
+K V P++ + LH+ +REY+DYEF F+ D+E I+DD+I M F VGND
Sbjct: 233 KKTQRVCAPEETTFHLLHLSLMREYIDYEFSELKAKITFKYDIERIIDDWILMGFLVGND 292
Query: 347 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 406
F+PH+P L I A+ LL Y LGGY+ + +L R E ++ + ++ F
Sbjct: 293 FIPHLPHLHINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFS 352
Query: 407 K 407
+
Sbjct: 353 E 353
Score = 83 (34.3 bits), Expect = 3.6e-105, Sum P(4) = 3.6e-105
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPV 27
MGVP FYRW++E+YP + ++V++E +
Sbjct: 1 MGVPKFYRWISERYPCL-SEVVKEHQI 26
Score = 41 (19.5 bits), Expect = 3.7e-63, Sum P(4) = 3.7e-63
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 449 GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH 481
G LAS S Y S G + G+G+ PH
Sbjct: 914 GYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPH 946
Score = 39 (18.8 bits), Expect = 5.9e-63, Sum P(4) = 5.9e-63
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 412 HQRHAERIKRE-KAQARRGDDVEPLAQPDSLVPVSRFHGS 450
H+ ++ E + R D+ EP +QP +++ H +
Sbjct: 1414 HKNEMKQFGNEVTVSSNRRDEYEPSSQPKQTSYMNKPHST 1453
>UNIPROTKB|J9PAD8 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
OMA:CKQRKSN InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 EMBL:AAEX03013647
Ensembl:ENSCAFT00000047807 Uniprot:J9PAD8
Length = 1730
Score = 506 (183.2 bits), Expect = 3.6e-105, Sum P(4) = 3.6e-105
Identities = 101/217 (46%), Positives = 135/217 (62%)
Query: 47 EYDNLYLDMNGIIHPCFHPEDRPAPTTF--DEVFQCMFDYIDRLFVMVRPRKLLYMAIDG 104
E+DNLYLDMNGIIH C HP D D++F +F Y++ LF +++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGT 164
VAPRAKMNQQ LP ++ FDSN ITPGT
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGET-------LPTEAR---FDSNCITPGT 137
Query: 165 EFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPN 224
EFMA L L+Y+++++++ D W+ + + S PGEGEHKIM ++R ++ P +DPN
Sbjct: 138 EFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPN 197
Query: 225 TRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQ 261
TRHCLYGLDADLIML L +HE HFS+LRE V G++
Sbjct: 198 TRHCLYGLDADLIMLGLTSHETHFSLLREEVRFGGKK 234
Score = 443 (161.0 bits), Expect = 3.6e-105, Sum P(4) = 3.6e-105
Identities = 77/182 (42%), Positives = 111/182 (60%)
Query: 527 DAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYY 586
D + ++D + +K YY K + + D Y + + W++HYYY
Sbjct: 414 DNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQWILHYYY 471
Query: 587 EGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYR 646
GV SW W+YPYHYAPF SD++++ I FELG PFKPF QLL V P+AS + LP Y+
Sbjct: 472 HGVQSWSWYYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQ 531
Query: 647 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 706
LMT +SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ H+L +EE +
Sbjct: 532 HLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMEACNHSLKKEERK 591
Query: 707 RN 708
RN
Sbjct: 592 RN 593
Score = 203 (76.5 bits), Expect = 3.6e-105, Sum P(4) = 3.6e-105
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 290 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFMCFFVGND 346
+K V P++ + LH+ +REY+DYEF F+ D+E I+DD+I M F VGND
Sbjct: 233 KKTQRVCAPEETTFHLLHLSLMREYIDYEFSELKAKITFKYDIERIIDDWILMGFLVGND 292
Query: 347 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 406
F+PH+P L I A+ LL Y LGGY+ + +L R E ++ + ++ F
Sbjct: 293 FIPHLPHLHINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFS 352
Query: 407 K 407
+
Sbjct: 353 E 353
Score = 83 (34.3 bits), Expect = 3.6e-105, Sum P(4) = 3.6e-105
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPV 27
MGVP FYRW++E+YP + ++V++E +
Sbjct: 1 MGVPKFYRWISERYPCL-SEVVKEHQI 26
Score = 41 (19.5 bits), Expect = 3.7e-63, Sum P(4) = 3.7e-63
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 449 GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH 481
G LAS S Y S G + G+G+ PH
Sbjct: 914 GYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPH 946
Score = 37 (18.1 bits), Expect = 9.6e-63, Sum P(4) = 9.6e-63
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 412 HQRHAERIKRE-KAQARRGDDVEPLAQP 438
H+ ++ E + R D+ EP +QP
Sbjct: 1411 HKNEMKQFGNEVTVSSNRRDEYEPSSQP 1438
>UNIPROTKB|F1SKG4 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 OMA:CKQRKSN
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
EMBL:CU914452 EMBL:CU467674 Ensembl:ENSSSCT00000012784
ArrayExpress:F1SKG4 Uniprot:F1SKG4
Length = 1725
Score = 506 (183.2 bits), Expect = 6.7e-105, Sum P(5) = 6.7e-105
Identities = 101/217 (46%), Positives = 135/217 (62%)
Query: 47 EYDNLYLDMNGIIHPCFHPEDRPAPTTF--DEVFQCMFDYIDRLFVMVRPRKLLYMAIDG 104
E+DNLYLDMNGIIH C HP D D++F +F Y++ LF +++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGT 164
VAPRAKMNQQ LP ++ FDSN ITPGT
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGET-------LPTEAR---FDSNCITPGT 137
Query: 165 EFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPN 224
EFMA L L+Y+++++++ D W+ + + S PGEGEHKIM ++R ++ P +DPN
Sbjct: 138 EFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPN 197
Query: 225 TRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQ 261
TRHCLYGLDADLIML L +HE HFS+LRE V G++
Sbjct: 198 TRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKK 234
Score = 446 (162.1 bits), Expect = 6.7e-105, Sum P(5) = 6.7e-105
Identities = 78/182 (42%), Positives = 111/182 (60%)
Query: 527 DAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYY 586
D + ++D + +K YY K + + D Y + + W++HYYY
Sbjct: 414 DNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQWILHYYY 471
Query: 587 EGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYR 646
GV SW WFYPYHYAPF SD++++ I FELG PFKPF QLL V P+AS + LP Y+
Sbjct: 472 HGVQSWSWFYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQ 531
Query: 647 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 706
LMT +SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ H+L +EE +
Sbjct: 532 HLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERK 591
Query: 707 RN 708
RN
Sbjct: 592 RN 593
Score = 205 (77.2 bits), Expect = 6.7e-105, Sum P(5) = 6.7e-105
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 290 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFMCFFVGND 346
+K V P++ + LH+ +REY+DYEF F+ D+E I+DD+I M F VGND
Sbjct: 233 KKTQRVCAPEETTFHLLHLSLMREYIDYEFSALKDKITFKYDIERIIDDWILMGFLVGND 292
Query: 347 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 406
F+PH+P L I A+ LL Y LGGY+ + +L R E ++ + ++ F
Sbjct: 293 FIPHLPHLHINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFS 352
Query: 407 K 407
+
Sbjct: 353 E 353
Score = 83 (34.3 bits), Expect = 6.7e-105, Sum P(5) = 6.7e-105
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPV 27
MGVP FYRW++E+YP + ++V++E +
Sbjct: 1 MGVPKFYRWISERYPCL-SEVVKEHQI 26
Score = 41 (19.5 bits), Expect = 9.8e-63, Sum P(5) = 9.8e-63
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 449 GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH 481
G LAS S Y S G + G+G+ PH
Sbjct: 914 GYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPH 946
Score = 37 (18.1 bits), Expect = 6.7e-105, Sum P(5) = 6.7e-105
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 1005 PQGGYSGYQSPAAGSFNQWGGANQS 1029
PQ + Y S ++ S GG N S
Sbjct: 1191 PQPAVNHYSSNSSVSSGHLGGLNHS 1215
Score = 37 (18.1 bits), Expect = 5.8e-63, Sum P(4) = 5.8e-63
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 398 GSYEDRIFQKRARLHQRHAERIKREKAQAR 427
G ++ + Q++ H++ E K K ++R
Sbjct: 1274 GFNDNSVKQRKHEPHKKFKEECKSPKTESR 1303
>UNIPROTKB|E1BMZ8 [details] [associations]
symbol:E1BMZ8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 OMA:CKQRKSN
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
EMBL:DAAA02002875 EMBL:DAAA02002876 EMBL:DAAA02002877
IPI:IPI00689341 Ensembl:ENSBTAT00000015318 Uniprot:E1BMZ8
Length = 1723
Score = 506 (183.2 bits), Expect = 1.4e-104, Sum P(5) = 1.4e-104
Identities = 101/217 (46%), Positives = 135/217 (62%)
Query: 47 EYDNLYLDMNGIIHPCFHPEDRPAPTTF--DEVFQCMFDYIDRLFVMVRPRKLLYMAIDG 104
E+DNLYLDMNGIIH C HP D D++F +F Y++ LF +++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGT 164
VAPRAKMNQQ LP ++ FDSN ITPGT
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEEKIKKAIEKGET-------LPAEAR---FDSNCITPGT 137
Query: 165 EFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPN 224
EFMA L L+Y+++++++ D W+ + + S PGEGEHKIM ++R ++ P +DPN
Sbjct: 138 EFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPN 197
Query: 225 TRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQ 261
TRHCLYGLDADLIML L +HE HFS+LRE V G++
Sbjct: 198 TRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKK 234
Score = 443 (161.0 bits), Expect = 1.4e-104, Sum P(5) = 1.4e-104
Identities = 76/163 (46%), Positives = 105/163 (64%)
Query: 546 WKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFAS 605
+K YY K + + D Y + + W++HYYY GV SW WFYPYHYAPF S
Sbjct: 433 YKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQWILHYYYHGVQSWSWFYPYHYAPFLS 490
Query: 606 DLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFE 665
D++++ I FELG PFKPF QLL V P+AS + LP Y+ LMT +SPI ++YP DF+
Sbjct: 491 DIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTSDDSPIIEYYPPDFK 550
Query: 666 VDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRN 708
D+NGK+ W+ + +PFIDE RLL+ ++ H+L +EE +RN
Sbjct: 551 TDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRN 593
Score = 205 (77.2 bits), Expect = 1.4e-104, Sum P(5) = 1.4e-104
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 290 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFMCFFVGND 346
+K V P++ + LH+ +REY+DYEF F+ D+E I+DD+I M F VGND
Sbjct: 233 KKTQRVCAPEETTFHLLHLSLMREYIDYEFSALKDKITFKYDIERIIDDWILMGFLVGND 292
Query: 347 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 406
F+PH+P L I A+ LL Y LGGY+ + +L R E ++ + ++ F
Sbjct: 293 FIPHLPHLHINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFS 352
Query: 407 K 407
+
Sbjct: 353 E 353
Score = 83 (34.3 bits), Expect = 1.4e-104, Sum P(5) = 1.4e-104
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPV 27
MGVP FYRW++E+YP + ++V++E +
Sbjct: 1 MGVPKFYRWISERYPCL-SEVVKEHQI 26
Score = 41 (19.5 bits), Expect = 9.7e-63, Sum P(5) = 9.7e-63
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 449 GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH 481
G LAS S Y S G + G+G+ PH
Sbjct: 914 GYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPH 946
Score = 37 (18.1 bits), Expect = 1.4e-104, Sum P(5) = 1.4e-104
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 1005 PQGGYSGYQSPAAGSFNQWGGANQS 1029
PQ + Y S ++ S GG N S
Sbjct: 1191 PQPAVNHYSSNSSVSSGHLGGLNHS 1215
>ZFIN|ZDB-GENE-040426-1203 [details] [associations]
symbol:xrn1 "5'-3' exoribonuclease 1" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743
ZFIN:ZDB-GENE-040426-1203 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
CTD:54464 KO:K12618 InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 EMBL:CU929319 IPI:IPI00498230
RefSeq:NP_957327.2 UniGene:Dr.69803 Ensembl:ENSDART00000125413
GeneID:394008 KEGG:dre:394008 NextBio:20814974 ArrayExpress:F1Q4U5
Bgee:F1Q4U5 Uniprot:F1Q4U5
Length = 1697
Score = 512 (185.3 bits), Expect = 2.6e-104, Sum P(5) = 2.6e-104
Identities = 104/219 (47%), Positives = 135/219 (61%)
Query: 47 EYDNLYLDMNGIIHPCFHPEDRPAPTTFDE--VFQCMFDYIDRLFVMVRPRKLLYMAIDG 104
E+DNLYLDMNGIIH C HP D E +F +F Y++ LF +++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKIFADIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGT 164
VAPRAKMNQQ LP ++ FDSN ITPGT
Sbjct: 88 VAPRAKMNQQRGRRFRSAKEAEEKIKKALEKGEV-------LPTEAR---FDSNCITPGT 137
Query: 165 EFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPN 224
+FMA L L+Y++H +L+ D W+ + V LS PGEGEHKIM ++R + PG++PN
Sbjct: 138 DFMARLQEQLKYFVHNKLSTDKTWQGVNVYLSGHETPGEGEHKIMEFIRSESTKPGHNPN 197
Query: 225 TRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDK 263
TRHCLYGLDADLIML L +HE HFS+LRE V G++ +
Sbjct: 198 TRHCLYGLDADLIMLGLTSHEPHFSLLREEVRFGGKKSQ 236
Score = 423 (154.0 bits), Expect = 2.6e-104, Sum P(5) = 2.6e-104
Identities = 75/184 (40%), Positives = 110/184 (59%)
Query: 525 KSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHY 584
+++ D ++D + +K YY K + + E + Y EG+ W++HY
Sbjct: 414 RAEGAEEDGEDDDMFETEFRQYKRTYYMTKMGVEVVSD--EFLANQAKCYVEGIQWILHY 471
Query: 585 YYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEH 644
YY GV SW W+YPYHYAPF SD++++ +++F+L PF PF QLL V PSAS LP+
Sbjct: 472 YYHGVQSWSWYYPYHYAPFLSDVRNISGLSLTFDLAKPFMPFEQLLAVLPSASKDLLPQC 531
Query: 645 YRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEE 704
Y+ LMT +SPI ++YP DF+ D+NGK+ W+ + +PFIDE LL ++ H LT E
Sbjct: 532 YQHLMTSLSSPIVEYYPQDFKTDLNGKQQEWEAVVLIPFIDEKCLLAAMEPYTHNLTPSE 591
Query: 705 ARRN 708
RN
Sbjct: 592 KARN 595
Score = 211 (79.3 bits), Expect = 2.6e-104, Sum P(5) = 2.6e-104
Identities = 45/128 (35%), Positives = 70/128 (54%)
Query: 283 RKAGEFDEKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFM 339
R G+ +K + P++ + LH+ +REY+DYEF FE DLE I+DD++ M
Sbjct: 229 RFGGKKSQK--RITAPEETTFHLLHLSLMREYIDYEFSELRKKISFEYDLERIIDDWVLM 286
Query: 340 CFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGS 399
F VGNDF+PH+P L I A+ LL Y +LGGYL + +L E +++ +
Sbjct: 287 GFLVGNDFIPHLPHLHINHDALPLLYRTYINVLPSLGGYLNENGHLNLTHFEKYLEKLSD 346
Query: 400 YEDRIFQK 407
++ F +
Sbjct: 347 FDREHFSE 354
Score = 83 (34.3 bits), Expect = 2.6e-104, Sum P(5) = 2.6e-104
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPV 27
MGVP FYRW++E+YP + ++V++E +
Sbjct: 1 MGVPKFYRWISERYPCL-SEVVKEHQI 26
Score = 41 (19.5 bits), Expect = 2.6e-104, Sum P(5) = 2.6e-104
Identities = 20/58 (34%), Positives = 21/58 (36%)
Query: 965 NSSGEHPTHLYNPSGIHQNGGPRYPPRPMGSTSSGANLYPPQGGYS----GYQSPAAG 1018
NS G P G+ Q P P M G L PPQG Y G Q P G
Sbjct: 1522 NSLGSFPLPPPIFPGVQQMR-PLAPHPSMFGQPGGGFLMPPQG-YGPLPWGMQFPHQG 1577
Score = 41 (19.5 bits), Expect = 1.6e-64, Sum P(5) = 1.6e-64
Identities = 15/61 (24%), Positives = 25/61 (40%)
Query: 432 VEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSECVGRLDNGKGTSGRPHKVPRLSSGAT 491
++ L Q V G LAS + Y S G + G+G+ PH +++ G
Sbjct: 896 LDALIQNQHKYSVKYSPGYVLASRLGITGYLVSRFSGSIFIGRGSKKNPHGEQKVNVGLN 955
Query: 492 I 492
+
Sbjct: 956 L 956
>FB|FBgn0020261 [details] [associations]
symbol:pcm "pacman" species:7227 "Drosophila melanogaster"
[GO:0004534 "5'-3' exoribonuclease activity" evidence=ISS;IDA]
[GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0007369
"gastrulation" evidence=NAS] [GO:0006401 "RNA catabolic process"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0034428 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 5'-3'" evidence=IMP] [GO:0042060
"wound healing" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0046529 "imaginal disc
fusion, thorax closure" evidence=IMP] [GO:0007391 "dorsal closure"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0010603 "regulation of cytoplasmic mRNA processing body
assembly" evidence=IMP] InterPro:IPR004859 InterPro:IPR016494
Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0016246 GO:GO:0000184
GO:GO:0007391 EMBL:AE014298 GO:GO:0007283 GO:GO:0003676
GO:GO:0042060 GO:GO:0000932 GO:GO:0007476 GO:GO:0008409
GO:GO:0046529 KO:K12618 InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 RefSeq:NP_001162796.1 UniGene:Dm.7395
PDB:2LYD PDB:2Y35 PDBsum:2LYD PDBsum:2Y35
EnsemblMetazoa:FBtr0302082 GeneID:32935 KEGG:dme:Dmel_CG3291
CTD:32935 FlyBase:FBgn0020261 OMA:FVPIQAY PhylomeDB:E1JJR3
GenomeRNAi:32935 NextBio:781106 Bgee:E1JJR3 GO:GO:0034428
GO:GO:0010603 Uniprot:E1JJR3
Length = 1613
Score = 515 (186.3 bits), Expect = 5.8e-101, Sum P(4) = 5.8e-101
Identities = 99/211 (46%), Positives = 132/211 (62%)
Query: 47 EYDNLYLDMNGIIHPCFHPEDRPAPTTFDE--VFQCMFDYIDRLFVMVRPRKLLYMAIDG 104
E+DNLYLDMNGI+H C HP+D +E +FQ +F+Y+D+LF +++P++L ++++DG
Sbjct: 28 EFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQRLFFLSVDG 87
Query: 105 VAPRAKMNQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGT 164
VAPRAKMNQQ + + FDSN ITPGT
Sbjct: 88 VAPRAKMNQQRSRRFRTAREAEQQEAKAAQRGELR-----------EHERFDSNCITPGT 136
Query: 165 EFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPN 224
EFM L L+ ++ +++ DP W++ VILS PGEGEHKIM Y+R + P YDPN
Sbjct: 137 EFMVRLQEGLRAFLKTKISTDPLWQRCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPN 196
Query: 225 TRHCLYGLDADLIMLALATHEVHFSILREVV 255
TRHCLYGLDADLI+L L THE+HF +LRE V
Sbjct: 197 TRHCLYGLDADLIILGLCTHELHFVVLREEV 227
Score = 429 (156.1 bits), Expect = 5.8e-101, Sum P(4) = 5.8e-101
Identities = 81/183 (44%), Positives = 112/183 (61%)
Query: 527 DAFNSDNPEEDKVKLGE-PGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYY 585
D D +E+ V L E +K +Y KF + P + E +++ Y L WV+ YY
Sbjct: 394 DDSEEDCSDENAVLLKEFQNYKRNFYRNKFK-RDPND--ELIEELCHHYVNALQWVLDYY 450
Query: 586 YEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHY 645
Y GV SW W+YP+HY PF SDLK+++Q I+F +G PF PF QLL V P+AS+ LP Y
Sbjct: 451 YRGVQSWDWYYPFHYTPFISDLKNIEQVEIAFHMGTPFLPFQQLLAVLPAASAKLLPVAY 510
Query: 646 RKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEA 705
LM P SP+++FYP +FE D+NGK++ W+ + +PFIDE RLL + E L+ EE
Sbjct: 511 HDLMLLPTSPLAEFYPLEFESDLNGKKHDWEAVVLIPFIDEGRLLAAMLPCEAQLSLEER 570
Query: 706 RRN 708
RN
Sbjct: 571 ERN 573
Score = 199 (75.1 bits), Expect = 5.8e-101, Sum P(4) = 5.8e-101
Identities = 44/128 (34%), Positives = 70/128 (54%)
Query: 283 RKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEF-RIPNPPFEIDLECIVDDFIFMCF 341
R+ +F V + + LH+ LREYL+ EF + ++D+ ++DD++ M F
Sbjct: 224 REEVKFGRNVKRTSVEETRFFLLHLGLLREYLELEFDALRTDEHKLDIAQLIDDWVLMGF 283
Query: 342 FVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYE 401
VGNDF+PH+P L I A+ LL Y + LGG + + K +LRR++ FI A+ E
Sbjct: 284 LVGNDFIPHLPCLHISSNALPLLYRTYIGIYPTLGGNINENGKLNLRRLQIFISALTEVE 343
Query: 402 DRIFQKRA 409
F++ A
Sbjct: 344 LDHFKEHA 351
Score = 68 (29.0 bits), Expect = 1.6e-53, Sum P(4) = 1.6e-53
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MGVP F+R+++E+YP + +++ E + D + NG+ ++ + D N I H
Sbjct: 1 MGVPKFFRYISERYPCL-SELAREHCIP------EFDNLYLDMNGIVHNCSHPDDNNI-H 52
Query: 61 PCFHPEDRPAPTTFDEVF 78
FH E+ F E+F
Sbjct: 53 --FHLEEEQI---FQEIF 65
Score = 49 (22.3 bits), Expect = 5.8e-101, Sum P(4) = 5.8e-101
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 963 DRNSSGEHPTHLYNPSGIHQNGGPRYPP 990
+RN G P ++Y S + Q P YPP
Sbjct: 571 ERNRHG--PMYVYKYSTVAQGPMPAYPP 596
Score = 46 (21.3 bits), Expect = 7.3e-45, Sum P(3) = 7.3e-45
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 315 DYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAV 367
D+ + PF DL+ I + + + F +G FLP L + A L+ V
Sbjct: 458 DWYYPFHYTPFISDLKNI--EQVEIAFHMGTPFLPFQQLLAVLPAASAKLLPV 508
Score = 45 (20.9 bits), Expect = 1.5e-100, Sum P(4) = 1.5e-100
Identities = 18/79 (22%), Positives = 31/79 (39%)
Query: 911 YNRFSQPRTDSYPAGHSQSSISAAQPPYDGGYSQHYASNTSH-HPNRRYHPQYDRNSSGE 969
++ + PR A H+ + P +Q +N H H + Y+P + +
Sbjct: 1408 WHEWVHPRMQHANAFHAGVNNGYQMRPKKNIAAQSTFNNNVHMHLQQPYYPNQQQQQQQQ 1467
Query: 970 HPTHLYNPSGIHQNGGPRY 988
P L + I+ N PRY
Sbjct: 1468 QPLQL---TEIN-NAPPRY 1482
Score = 41 (19.5 bits), Expect = 2.4e-44, Sum P(3) = 2.4e-44
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 828 PVLWHEDSGRRPHENGRHNPHGTISGRQLGEAAHRLVANSLQHMK 872
P+L+ G P G N +G ++ R+L L L H K
Sbjct: 304 PLLYRTYIGIYPTLGGNINENGKLNLRRLQIFISALTEVELDHFK 348
>WB|WBGene00012730 [details] [associations]
symbol:xrn-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0016246
"RNA interference" evidence=IMP] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0016246 GO:GO:0003676
GO:GO:0005622 GO:GO:0008409 EMBL:AL032634 eggNOG:COG5049 KO:K12618
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
OMA:NIFAYIE RefSeq:NP_496945.3 UniGene:Cel.6888
ProteinModelPortal:Q9BHK7 SMR:Q9BHK7 STRING:Q9BHK7 PaxDb:Q9BHK7
EnsemblMetazoa:Y39G8C.1 GeneID:175059 KEGG:cel:CELE_Y39G8C.1
UCSC:Y39G8C.1 CTD:175059 WormBase:Y39G8C.1 HOGENOM:HOG000021950
InParanoid:Q9BHK7 NextBio:886590 Uniprot:Q9BHK7
Length = 1591
Score = 495 (179.3 bits), Expect = 6.7e-101, Sum P(4) = 6.7e-101
Identities = 104/211 (49%), Positives = 131/211 (62%)
Query: 47 EYDNLYLDMNGIIHPCFHPEDRPAP--TTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDG 104
E+DNLYLDMNGIIH C HP D T DE+F +F YI+ L+ ++RP+K+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHNCSHPNDDDVTFRITEDEIFVNIFAYIENLYNLIRPQKVFFMAVDG 87
Query: 105 VAPRAKMNQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGT 164
VAPRAKMNQQ ++ P S+++ FDSN ITPGT
Sbjct: 88 VAPRAKMNQQRARRFMSARTAHTQLAKALENG--------EIMP-SEAR-FDSNCITPGT 137
Query: 165 EFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPN 224
FM L L +I + D W+ K+ILS NVPGEGEHKIM ++R +R YDPN
Sbjct: 138 YFMTRLHQKLDDWIKTKSATDSRWQGRKIILSGHNVPGEGEHKIMDFIRTERAGSSYDPN 197
Query: 225 TRHCLYGLDADLIMLALATHEVHFSILREVV 255
TRHC+YGLDADLIML + +HE HFS+LRE V
Sbjct: 198 TRHCMYGLDADLIMLGIVSHEPHFSLLREEV 228
Score = 404 (147.3 bits), Expect = 6.7e-101, Sum P(4) = 6.7e-101
Identities = 76/165 (46%), Positives = 100/165 (60%)
Query: 547 KERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASD 606
K+ YY +K K +++ R+ Y + W +HYYY G SW WFYP+HYAPF SD
Sbjct: 496 KKTYYSDKLRYKNIS-KQQLREQAE-GYVRAIQWNLHYYYHGCVSWSWFYPHHYAPFISD 553
Query: 607 LKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMT-DP-NSPISDFYPTDF 664
++ + FEL PF PF QLL V P AS+ LP R+LM+ DP SPI DFYP +F
Sbjct: 554 VRGFVGMRMEFELSEPFHPFEQLLAVLPEASADCLPRPLRELMSSDPAKSPICDFYPANF 613
Query: 665 EVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNS 709
E D+NGKR W+ + +PFI+E RLL+ ++ LT EE RNS
Sbjct: 614 ETDLNGKRNEWEAVVLIPFIEEKRLLEAIEAKRSRLTSEENARNS 658
Score = 214 (80.4 bits), Expect = 6.7e-101, Sum P(4) = 6.7e-101
Identities = 52/144 (36%), Positives = 79/144 (54%)
Query: 280 KAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFR-IPNP-PFEIDLECIVDDFI 337
K KA + ++ D V K + LH+ LREYL +EF + + PFE ++E IVDD+I
Sbjct: 236 KNDNKATKKPKRTDSDV---KKFHLLHLSLLREYLAWEFADVKDSLPFEYEMERIVDDWI 292
Query: 338 FMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAV 397
+ VGNDFLPH+P + I + A+ LL + YKK L GY+ + +L R E F+ +
Sbjct: 293 LLGLLVGNDFLPHLPNIHIHDDALPLLYSTYKKVLPTLDGYINEAGYLNLSRFEAFLAEL 352
Query: 398 GSYEDRIFQKRARLHQ-RHAERIK 420
+ F +R Q ++RI+
Sbjct: 353 ALNDKTSFMERLEDEQFMESKRIR 376
Score = 80 (33.2 bits), Expect = 6.7e-101, Sum P(4) = 6.7e-101
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPV 27
MGVP FYRW +E+YP + ++VI E +
Sbjct: 1 MGVPKFYRWTSERYPCL-SEVINESQI 26
Score = 41 (19.5 bits), Expect = 2.3e-45, Sum P(3) = 2.3e-45
Identities = 20/99 (20%), Positives = 34/99 (34%)
Query: 388 RRVEHFIQAVGSYEDRIFQKRARLHQRHAER-------IKREKAQA--RRGDDVEPLAQP 438
+R H + ++ +R HQR + + KR + + +D P A P
Sbjct: 1495 KRANH--PTLTDFKPSAVHRRQNCHQRPSNQPPKVTMITKRTSSPTPPEKEEDAAPRALP 1552
Query: 439 DSLVPVSRFHGSRLASGPSPSPYQQSECVGRLDNGKGTS 477
S P S+ + P +QS N +S
Sbjct: 1553 SSPPPPSKSAAEEKTTTKKPRKKKQSRLGSNFSNPTASS 1591
>DICTYBASE|DDB_G0276137 [details] [associations]
symbol:xrn1 "5'-3' exoribonuclease" species:44689
"Dictyostelium discoideum" [GO:0005622 "intracellular"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004859 Pfam:PF03159
dictyBase:DDB_G0276137 EMBL:AAFI02000014 GenomeReviews:CM000151_GR
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 eggNOG:COG5049 KO:K12618
InterPro:IPR027073 PANTHER:PTHR12341 RefSeq:XP_643245.1
ProteinModelPortal:Q75JF5 STRING:Q75JF5 EnsemblProtists:DDB0237529
GeneID:8620288 KEGG:ddi:DDB_G0276137 InParanoid:Q75JF5 OMA:GMPYGAM
Uniprot:Q75JF5
Length = 1749
Score = 443 (161.0 bits), Expect = 2.1e-100, Sum P(5) = 2.1e-100
Identities = 100/225 (44%), Positives = 132/225 (58%)
Query: 44 NGLEYDNLYLDMNGIIHPCFHPEDRPAPTTF--DEVFQCMFDYIDRLFVMVRPRKLLYMA 101
N EYDNLYLDMNGIIH C E + F +E+ + + +Y+DRLF +RP KL YMA
Sbjct: 25 NPPEYDNLYLDMNGIIHACSQ-EFANSLIEFSEEELIRQVCNYVDRLFHTIRPTKLFYMA 83
Query: 102 IDGVAPRAKMNQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVIT 161
IDGVAPR+K+NQQ K P+ +F+ IT
Sbjct: 84 IDGVAPRSKINQQRQRRFLSVHRDEKLKQKLISEG--------KPVPEV---IFNRTAIT 132
Query: 162 PGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGY 221
PGT+FM LS ++Q+YI +++ D W +++VI S PGEGEHKI+ Y+R + P +
Sbjct: 133 PGTQFMYNLSESIQFYIKKKISEDLSWREVRVIFSGPENPGEGEHKIIDYIRKNKASPDW 192
Query: 222 DPNTRHCLYGLDADLIMLALATHEVHFSILREVV-FTPGQQDKCF 265
D N HCLYGLDADLI+L L THE +FSILRE + F P ++ F
Sbjct: 193 DANQSHCLYGLDADLILLGLITHEPNFSILREEISFKPTKRQLDF 237
Score = 374 (136.7 bits), Expect = 2.1e-100, Sum P(5) = 2.1e-100
Identities = 77/171 (45%), Positives = 101/171 (59%)
Query: 550 YYEEKFNA--KTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDL 607
YY + FN T +E + ++ VVL Y EGL WV++YY+ G SW WFYP++YAP A D
Sbjct: 419 YYRQYFNEFPNTLDEIKAFKEKVVLSYVEGLVWVLNYYHNGCISWVWFYPFYYAPLAIDF 478
Query: 608 KDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVD 667
++ +I F+ G P PF QLL V P S +P+ Y+ LM D SPI DFYP +FE+D
Sbjct: 479 NNIPDLHIDFQPGEPITPFQQLLSVLPPQSVDLIPKSYQTLMLDLFSPIIDFYPVEFEID 538
Query: 668 MNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTL--------TEEEARRNSI 710
Y + GIA+L FID RLLD I+ +L T+EE RNSI
Sbjct: 539 TKDPHY-FDGIAELGFIDHQRLLDATASIKKSLAQSGQKVFTDEEEARNSI 588
Score = 260 (96.6 bits), Expect = 2.1e-100, Sum P(5) = 2.1e-100
Identities = 49/102 (48%), Positives = 67/102 (65%)
Query: 302 YQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAI 361
+Q LHI LREYLD E R + F DLE I+DDFI + F GNDFLPH+P LEI +G +
Sbjct: 237 FQLLHISLLREYLDLELRNDDLEFGYDLERIIDDFILIMIFFGNDFLPHLPFLEISKGGL 296
Query: 362 NLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDR 403
N + +YK +LGGYLT+G+ L R++HF + + +E +
Sbjct: 297 NSIFELYKSSLPSLGGYLTEGATIDLERLQHFFKFLQKFEKK 338
Score = 86 (35.3 bits), Expect = 2.1e-100, Sum P(5) = 2.1e-100
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVD 37
MGVP F+RW++E+YP ++ +++ P D + + ++
Sbjct: 1 MGVPRFFRWVSERYPQILQKILDSNPPEYDNLYLDMN 37
Score = 78 (32.5 bits), Expect = 2.1e-100, Sum P(5) = 2.1e-100
Identities = 24/92 (26%), Positives = 43/92 (46%)
Query: 907 YDQGYNRFSQPRTDSYP-AGHSQSSIS---AAQPPY--DGGYSQHYASNTSHHPNRRYHP 960
+ G N +Q + + +P A ++ +S++ +P Y Q YA + ++PN Y+
Sbjct: 1323 HHHGQNH-NQNKVNQHPLAINNPNSVNYPMKRKPTYVKQNFEQQEYADLSKNYPNLEYNF 1381
Query: 961 QYDRNSSGEHPTHLYNPSGIHQNGGPRYPPRP 992
YD+N + P L P Q P+ P+P
Sbjct: 1382 YYDQNDQRKQPQQLQQPKP-QQQPQPQPQPQP 1412
Score = 76 (31.8 bits), Expect = 3.4e-100, Sum P(5) = 3.4e-100
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 936 PPYDGGYSQHYASN---TSHHPNRR---YHPQYDRNSSGEHPTHLYNPSGIHQNGGPRYP 989
PP+ GY HY HHP ++ +H Q + +HPT P+ + P+ P
Sbjct: 1564 PPHMMGYPPHYHPGHPYPPHHPGQQEEHHHHQQQQQEQQQHPTQQEQPNQHPKKKQPKQP 1623
Query: 990 PRP 992
P
Sbjct: 1624 KLP 1626
Score = 61 (26.5 bits), Expect = 1.2e-98, Sum P(5) = 1.2e-98
Identities = 26/80 (32%), Positives = 29/80 (36%)
Query: 936 PPYDGGYSQHYASNTSHHPNRRYHPQYDRNSSGEHPTHLYNPSGIHQNGGPRYPPRPMGS 995
PP+ G HY P Y P Y HP H Y P H G YPP P
Sbjct: 1520 PPHMMG---HYPPGPP--PMMGYPPHY-------HPGHSYPPPPPHMMGN--YPPGPPPP 1565
Query: 996 TSSGANLYPPQGGYSGYQSP 1015
G YPP + G+ P
Sbjct: 1566 HMMG---YPPHY-HPGHPYP 1581
Score = 57 (25.1 bits), Expect = 3.2e-98, Sum P(5) = 3.2e-98
Identities = 10/49 (20%), Positives = 26/49 (53%)
Query: 934 AQPPYDGGYSQHYASNTSHHPNRRYHPQ-YDRNSSGEHPTHLYNPSGIH 981
+ P + + +N +++ N +H Q +++N +HP + NP+ ++
Sbjct: 1300 SNPQQHNANNNNNNNNYNNNNNNHHHGQNHNQNKVNQHPLAINNPNSVN 1348
Score = 49 (22.3 bits), Expect = 2.2e-97, Sum P(5) = 2.2e-97
Identities = 20/107 (18%), Positives = 34/107 (31%)
Query: 902 QEYGVYDQGYNRFSQPRTDSYPAGHSQSSISAAQPPYDGGYSQHYASNTSHHPNR--RYH 959
Q++ + N+ + + P Q + + QP DG Q +PN+ +
Sbjct: 1602 QQHPTQQEQPNQHPKKKQPKQPKLPKQPNQNQTQPTQDGQQQQPPKQPKQPNPNQTPKQP 1661
Query: 960 PQYDRNSSGEHPTHLYNPSGIHQNGGPRYPPRPMGSTSSGANLYPPQ 1006
Q + P P Q P P +P + P Q
Sbjct: 1662 AQPKQTKQPAQPKQPAQPKQAAQTKQPAQPKQPAQPKQAAQTKQPKQ 1708
>SGD|S000003141 [details] [associations]
symbol:XRN1 "Evolutionarily-conserved 5'-3' exonuclease
component of cytoplasmic p" species:4932 "Saccharomyces cerevisiae"
[GO:0070651 "nonfunctional rRNA decay" evidence=IMP] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IMP;IDA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA;IMP;IDA] [GO:0008409 "5'-3' exonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA;TAS]
[GO:0006364 "rRNA processing" evidence=IEA;TAS] [GO:0004536
"deoxyribonuclease activity" evidence=TAS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0007089 "traversing start control point
of mitotic cell cycle" evidence=IMP] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000741 "karyogamy" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 SGD:S000003141 GO:GO:0005829 GO:GO:0048471
GO:GO:0000184 EMBL:BK006941 GO:GO:0003723 GO:GO:0000932
GO:GO:0000956 GO:GO:0005874 GO:GO:0004536 GO:GO:0006364
GO:GO:0007089 GO:GO:0000741 EMBL:X84705 GO:GO:0070651
Reactome:REACT_83470 eggNOG:COG5049 KO:K12618 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 HOGENOM:HOG000160331
OrthoDB:EOG4PP1R0 EMBL:M90097 EMBL:X54717 EMBL:M58367 EMBL:M36725
EMBL:X61181 EMBL:Z72695 PIR:S13743 RefSeq:NP_011342.1
ProteinModelPortal:P22147 SMR:P22147 DIP:DIP-656N IntAct:P22147
MINT:MINT-414332 STRING:P22147 PaxDb:P22147 PeptideAtlas:P22147
EnsemblFungi:YGL173C GeneID:852702 KEGG:sce:YGL173C CYGD:YGL173c
GeneTree:ENSGT00670000098080 OMA:NIFAYIE Reactome:REACT_78815
NextBio:972050 Genevestigator:P22147 GermOnline:YGL173C
Uniprot:P22147
Length = 1528
Score = 494 (179.0 bits), Expect = 2.8e-97, Sum P(5) = 2.8e-97
Identities = 104/218 (47%), Positives = 136/218 (62%)
Query: 47 EYDNLYLDMNGIIHPCFHPEDRPAPT--TFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDG 104
E+DNLYLDMN I+H C H D T +EVF + YID LF ++P+K+ YMAIDG
Sbjct: 28 EFDNLYLDMNSILHNCTHGNDDDVTKRLTEEEVFAKICTYIDHLFQTIKPKKIFYMAIDG 87
Query: 105 VAPRAKMNQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGT 164
VAPRAKMNQQ PK + FDSN ITPGT
Sbjct: 88 VAPRAKMNQQRARRFRTAMDAEKALKKAIENGDEI--------PKGEP--FDSNSITPGT 137
Query: 165 EFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPN 224
EFMA L+ LQY+IH +++ND W ++++I S VPGEGEHKIM+++R ++ ++ N
Sbjct: 138 EFMAKLTKNLQYFIHDKISNDSKWREVQIIFSGHEVPGEGEHKIMNFIRHLKSQKDFNQN 197
Query: 225 TRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQD 262
TRHC+YGLDADLIML L+TH HF++LRE V T G+++
Sbjct: 198 TRHCIYGLDADLIMLGLSTHGPHFALLREEV-TFGRRN 234
Score = 411 (149.7 bits), Expect = 2.8e-97, Sum P(5) = 2.8e-97
Identities = 75/172 (43%), Positives = 104/172 (60%)
Query: 546 WKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFAS 605
WK YY +K T + EE +D+ Y EGL WV++YYY G SW W+YP+HYAP S
Sbjct: 511 WKHEYYHDKLKFTT--DSEEKVRDLAKDYVEGLQWVLYYYYRGCPSWSWYYPHHYAPRIS 568
Query: 606 DL-KDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDF 664
DL K LDQ +I F+L PF PF QL+ V P S + +P +R LM D SPI DFYP +
Sbjct: 569 DLAKGLDQ-DIEFDLSKPFTPFQQLMAVLPERSKNLIPPAFRPLMYDEQSPIHDFYPAEV 627
Query: 665 EVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLF 716
++D NGK W+ + + F+DE RL++ ++ L+ EE RN D+++
Sbjct: 628 QLDKNGKTADWEAVVLISFVDEKRLIEAMQPYLRKLSPEEKTRNQFGKDLIY 679
Score = 187 (70.9 bits), Expect = 2.8e-97, Sum P(5) = 2.8e-97
Identities = 38/108 (35%), Positives = 66/108 (61%)
Query: 302 YQFLHIWTLREYLDYEFR-IPNP-PFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREG 359
+ LH+ LREY++ EF+ I + FE + E I+DDFI + F +GNDFLP++P L + +G
Sbjct: 245 FYLLHLSLLREYMELEFKEIADEMQFEYNFERILDDFILVMFVIGNDFLPNLPDLHLNKG 304
Query: 360 AINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQK 407
A +L+ +K+ GY+ + K +L+R+ ++ + +E F+K
Sbjct: 305 AFPVLLQTFKEALLHTDGYINEHGKINLKRLGVWLNYLSQFELLNFEK 352
Score = 62 (26.9 bits), Expect = 2.8e-97, Sum P(5) = 2.8e-97
Identities = 9/23 (39%), Positives = 20/23 (86%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIE 23
MG+P F+R+++E++P+++ +IE
Sbjct: 1 MGIPKFFRYISERWPMIL-QLIE 22
Score = 47 (21.6 bits), Expect = 2.8e-97, Sum P(5) = 2.8e-97
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 960 PQYDRNSSGEHPTHLYNPSGIHQNGGPRYPPRPMG 994
P + + +G HP H + + NG PP P G
Sbjct: 1403 PGFMTHPNGLHPLHPHQMPYPNMNGMSIPPPAPHG 1437
Score = 43 (20.2 bits), Expect = 3.9e-59, Sum P(6) = 3.9e-59
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 525 KSDAFNSDNPEEDKVKLGEPGWKERYYEEKF-NAKTPEEREETRKDVVLRYTEGL-CWVM 582
K D +S NP+E + + R +K+ NA E++EE + + Y E W
Sbjct: 456 KMD-LDSINPDETEEEFQNRVNSIRKTIKKYQNAIIVEDKEELETEKTI-YNERFERWKH 513
Query: 583 HYYYE 587
YY++
Sbjct: 514 EYYHD 518
Score = 42 (19.8 bits), Expect = 6.8e-44, Sum P(4) = 6.8e-44
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 828 PVLWHEDSGRRPHENGRHNPHGTISGRQLG 857
PVL H +G N HG I+ ++LG
Sbjct: 307 PVLLQTFKEALLHTDGYINEHGKINLKRLG 336
Score = 41 (19.5 bits), Expect = 3.9e-59, Sum P(6) = 3.9e-59
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 654 SPISDFYPTDFEVD--MN-GKRYSWQGIAKLPFIDEARLLDEV 693
SP D+YP V+ +N +RY +G +P +E L +V
Sbjct: 889 SPTPDYYPLQLVVESVVNEDERYKERG--PIPIEEEFPLNSKV 929
>ASPGD|ASPL0000014026 [details] [associations]
symbol:AN11052 species:162425 "Emericella nidulans"
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 EMBL:BN001302
GO:GO:0008409 OMA:CKQRKSN InterPro:IPR027073 PANTHER:PTHR12341
EnsemblFungi:CADANIAT00004228 Uniprot:C8V746
Length = 1398
Score = 545 (196.9 bits), Expect = 8.1e-95, Sum P(3) = 8.1e-95
Identities = 134/324 (41%), Positives = 183/324 (56%)
Query: 47 EYDNLYLDMNGIIHPCFHPEDRPAPT---TFDEVFQCMFDYIDRLFVMVRPRKLLYMAID 103
E+DNLYLDMNGIIH C H +D +PT T D++F +F+YI+ L+ ++P+KL +MA+D
Sbjct: 28 EFDNLYLDMNGIIHNCTH-KDSDSPTFRMTEDKMFIAIFNYIEHLYGKIKPKKLFFMAVD 86
Query: 104 GVAPRAKMNQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPG 163
GVAPRAKMNQQ PK D FDSN ITPG
Sbjct: 87 GVAPRAKMNQQRARRFRTALDAEQAKEKAIAQGIEM--------PKEDP--FDSNCITPG 136
Query: 164 TEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDP 223
TEFMA L+ L+Y+I +++ D W+ ++++LS VPGEGEHKIM Y+R + PGYDP
Sbjct: 137 TEFMAKLTEQLKYFISKKISEDKDWQGVEIVLSGHEVPGEGEHKIMEYIRHAKAQPGYDP 196
Query: 224 NTRHCLYGLDADLIMLALATHEVHFSILRE-VVFTPGQQDKCF-LCGQPGHLAANCEGKA 281
N RHCLYGLDADLIML L +H+ HF +LRE V F Q K L Q +L C +
Sbjct: 197 NVRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGRQVQKKPKELEHQNFYLLHLCMVRE 256
Query: 282 KRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNP--PFEIDLECIVDDFIFM 339
+ EF E +E ++ PY+F + + +++ F + N P +L I + + +
Sbjct: 257 YLQL-EFQELEEEGIIDF-PYEFERV--IDDFILMAFFVGNDFLPNLPNLH-INEGALSL 311
Query: 340 CFFVGNDFLPHMPTLEIREGAINL 363
F V + LP M +G INL
Sbjct: 312 MFKVYKEVLPKMGGYINEQGTINL 335
Score = 461 (167.3 bits), Expect = 8.1e-95, Sum P(3) = 8.1e-95
Identities = 83/171 (48%), Positives = 110/171 (64%)
Query: 546 WKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFAS 605
WK++YY EKF + EE RK + Y +GL WV+ YYY G+ SW WF+ HYAP S
Sbjct: 508 WKDKYYMEKFGWGL-DNHEEMRK-LTENYVQGLQWVLFYYYRGIASWPWFFNSHYAPMIS 565
Query: 606 DLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFE 665
D+K +++F LG PF+P++QL+GV P S +P+ Y LM+ P+SPI DFYP DFE
Sbjct: 566 DVKKGLNADMNFRLGRPFRPYDQLMGVLPDRSKKIVPKAYHDLMSSPDSPIIDFYPRDFE 625
Query: 666 VDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLF 716
+DMNGK+ W+ + K+PFIDE RLLD + EH LT EE RN + F
Sbjct: 626 LDMNGKKMEWEAVVKIPFIDERRLLDALATREHLLTPEEKARNGFGVSLKF 676
Score = 215 (80.7 bits), Expect = 1.6e-59, Sum P(3) = 1.6e-59
Identities = 50/147 (34%), Positives = 79/147 (53%)
Query: 302 YQFLHIWTLREYLDYEFRIPNPP----FEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIR 357
+ LH+ +REYL EF+ F + E ++DDFI M FFVGNDFLP++P L I
Sbjct: 246 FYLLHLCMVREYLQLEFQELEEEGIIDFPYEFERVIDDFILMAFFVGNDFLPNLPNLHIN 305
Query: 358 EGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAE 417
EGA++L+ VYK+ +GGY+ + +L+R+ + A+ E R F+ +++
Sbjct: 306 EGALSLMFKVYKEVLPKMGGYINEQGTINLQRLGVLLDALSHVEYRFFEAE------YSD 359
Query: 418 RI-KREKAQARRGDDVEPLAQPDSLVP 443
R K A G DV+ + ++ P
Sbjct: 360 ATWMRAKQSADNGADVDAKPKTFTVTP 386
Score = 75 (31.5 bits), Expect = 8.1e-95, Sum P(3) = 8.1e-95
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVD 37
MGVP F+RWL+E+YP + + E D + + ++
Sbjct: 1 MGVPKFFRWLSERYPAISMLIAENRIPEFDNLYLDMN 37
Score = 45 (20.9 bits), Expect = 3.3e-51, Sum P(3) = 3.3e-51
Identities = 17/58 (29%), Positives = 24/58 (41%)
Query: 646 RKLMTDPNSPISDFYPTDFEVDMNGKRYSW------QGIAKLPFIDEARLLDEVKKIE 697
R D P +DFYP D +D + +W + ++P E D VK IE
Sbjct: 1057 RNPRNDRYQP-TDFYPPDIALDKINEIKAWLKEIESKNFERVPLEAEQLDSDVVKLIE 1113
>GENEDB_PFALCIPARUM|PF11_0074 [details] [associations]
symbol:PF11_0074 "exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR004859 InterPro:IPR006141 Pfam:PF03159
PROSITE:PS50817 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
EMBL:AE014186 GO:GO:0016539 KO:K12618 InterPro:IPR027073
PANTHER:PTHR12341 RefSeq:XP_001347750.2 ProteinModelPortal:Q8IIU0
EnsemblProtists:PF11_0074:mRNA GeneID:810626 KEGG:pfa:PF11_0074
EuPathDB:PlasmoDB:PF3D7_1106300 HOGENOM:HOG000282212 Uniprot:Q8IIU0
Length = 734
Score = 305 (112.4 bits), Expect = 2.0e-65, Sum P(5) = 2.0e-65
Identities = 54/143 (37%), Positives = 83/143 (58%)
Query: 543 EPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAP 602
E +K+ YY KF + P+E + ++V +Y EGL W +HYY+ G SW W YPYHYAP
Sbjct: 565 EQKYKKYYYLHKFGLEDPKEIQ----NIVKKYIEGLFWNLHYYHFGCASWYWEYPYHYAP 620
Query: 603 FASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPT 662
SDL ++ + FE G P+ F L+ V P + LP+ Y+ + + + F+P
Sbjct: 621 LCSDLLSFEKSDFFFEKGKPYSAFTHLISVLPQKDKNLLPDAYKNIYVEDE--VKSFFPE 678
Query: 663 DFEVDMNGKRYSWQGIAKLPFID 685
+ ++D NGK+ +W+ I LPFI+
Sbjct: 679 NVKIDPNGKKETWEYIVHLPFIN 701
Score = 197 (74.4 bits), Expect = 2.0e-65, Sum P(5) = 2.0e-65
Identities = 44/102 (43%), Positives = 62/102 (60%)
Query: 152 SQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSY 211
S +F+ N IT GT+FM ++++L + + L +E VI S ++V GEGEHKI+ Y
Sbjct: 159 SNLFNPNCITTGTDFMYKINLSLNKWFKI-LKKKKVFE-FDVIFSGSDVAGEGEHKILKY 216
Query: 212 VRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILRE 253
+R N HC+YGLDADLIML+L TH + ILR+
Sbjct: 217 IRENCKRDSNFKNYNHCIYGLDADLIMLSLVTHLNNIFILRD 258
Score = 175 (66.7 bits), Expect = 2.0e-65, Sum P(5) = 2.0e-65
Identities = 31/68 (45%), Positives = 46/68 (67%)
Query: 49 DNLYLDMNGIIHPCFHPEDRPAPTTFDE--VFQCMFDYIDRLFVMVRPRKLLYMAIDGVA 106
D Y+DMNG+IH C H P +DE +F + Y+ LF +++P+KL+Y+ +DGV+
Sbjct: 75 DIFYIDMNGVIHHCTHANKEKLPI-YDEHELFSNILQYLKNLFYLIKPKKLIYIGVDGVS 133
Query: 107 PRAKMNQQ 114
P+AKMNQQ
Sbjct: 134 PKAKMNQQ 141
Score = 148 (57.2 bits), Expect = 2.0e-65, Sum P(5) = 2.0e-65
Identities = 29/92 (31%), Positives = 53/92 (57%)
Query: 332 IVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVE 391
+VDD +F+ F VGNDFLPH+P ++I EG++N ++ Y Y+T K + R++
Sbjct: 477 VVDDIVFLSFLVGNDFLPHIPNIDINEGSMNEILNSYIFYIYKYSNYITYKDKVHIERLK 536
Query: 392 HFIQAVGSYEDRIFQKRARLHQRHAERIKREK 423
++ + + E F+KR +++ +E +K
Sbjct: 537 IILKILSAQEFEYFKKRG-INENISEFTDEQK 567
Score = 62 (26.9 bits), Expect = 2.0e-65, Sum P(5) = 2.0e-65
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 2 GVPAFYRWLAEKYPLVVADVIEEE 25
G+P Y+WL YP V ++I E
Sbjct: 46 GIPRMYKWLTSYYPTVREELINNE 69
>UNIPROTKB|Q8IIU0 [details] [associations]
symbol:PF11_0074 "Exonuclease, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR004859 InterPro:IPR006141 Pfam:PF03159 PROSITE:PS50817
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 EMBL:AE014186
GO:GO:0016539 KO:K12618 InterPro:IPR027073 PANTHER:PTHR12341
RefSeq:XP_001347750.2 ProteinModelPortal:Q8IIU0
EnsemblProtists:PF11_0074:mRNA GeneID:810626 KEGG:pfa:PF11_0074
EuPathDB:PlasmoDB:PF3D7_1106300 HOGENOM:HOG000282212 Uniprot:Q8IIU0
Length = 734
Score = 305 (112.4 bits), Expect = 2.0e-65, Sum P(5) = 2.0e-65
Identities = 54/143 (37%), Positives = 83/143 (58%)
Query: 543 EPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAP 602
E +K+ YY KF + P+E + ++V +Y EGL W +HYY+ G SW W YPYHYAP
Sbjct: 565 EQKYKKYYYLHKFGLEDPKEIQ----NIVKKYIEGLFWNLHYYHFGCASWYWEYPYHYAP 620
Query: 603 FASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPT 662
SDL ++ + FE G P+ F L+ V P + LP+ Y+ + + + F+P
Sbjct: 621 LCSDLLSFEKSDFFFEKGKPYSAFTHLISVLPQKDKNLLPDAYKNIYVEDE--VKSFFPE 678
Query: 663 DFEVDMNGKRYSWQGIAKLPFID 685
+ ++D NGK+ +W+ I LPFI+
Sbjct: 679 NVKIDPNGKKETWEYIVHLPFIN 701
Score = 197 (74.4 bits), Expect = 2.0e-65, Sum P(5) = 2.0e-65
Identities = 44/102 (43%), Positives = 62/102 (60%)
Query: 152 SQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSY 211
S +F+ N IT GT+FM ++++L + + L +E VI S ++V GEGEHKI+ Y
Sbjct: 159 SNLFNPNCITTGTDFMYKINLSLNKWFKI-LKKKKVFE-FDVIFSGSDVAGEGEHKILKY 216
Query: 212 VRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILRE 253
+R N HC+YGLDADLIML+L TH + ILR+
Sbjct: 217 IRENCKRDSNFKNYNHCIYGLDADLIMLSLVTHLNNIFILRD 258
Score = 175 (66.7 bits), Expect = 2.0e-65, Sum P(5) = 2.0e-65
Identities = 31/68 (45%), Positives = 46/68 (67%)
Query: 49 DNLYLDMNGIIHPCFHPEDRPAPTTFDE--VFQCMFDYIDRLFVMVRPRKLLYMAIDGVA 106
D Y+DMNG+IH C H P +DE +F + Y+ LF +++P+KL+Y+ +DGV+
Sbjct: 75 DIFYIDMNGVIHHCTHANKEKLPI-YDEHELFSNILQYLKNLFYLIKPKKLIYIGVDGVS 133
Query: 107 PRAKMNQQ 114
P+AKMNQQ
Sbjct: 134 PKAKMNQQ 141
Score = 148 (57.2 bits), Expect = 2.0e-65, Sum P(5) = 2.0e-65
Identities = 29/92 (31%), Positives = 53/92 (57%)
Query: 332 IVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVE 391
+VDD +F+ F VGNDFLPH+P ++I EG++N ++ Y Y+T K + R++
Sbjct: 477 VVDDIVFLSFLVGNDFLPHIPNIDINEGSMNEILNSYIFYIYKYSNYITYKDKVHIERLK 536
Query: 392 HFIQAVGSYEDRIFQKRARLHQRHAERIKREK 423
++ + + E F+KR +++ +E +K
Sbjct: 537 IILKILSAQEFEYFKKRG-INENISEFTDEQK 567
Score = 62 (26.9 bits), Expect = 2.0e-65, Sum P(5) = 2.0e-65
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 2 GVPAFYRWLAEKYPLVVADVIEEE 25
G+P Y+WL YP V ++I E
Sbjct: 46 GIPRMYKWLTSYYPTVREELINNE 69
>DICTYBASE|DDB_G0289921 [details] [associations]
symbol:DDB_G0289921 species:44689 "Dictyostelium
discoideum" [GO:0005622 "intracellular" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004859
InterPro:IPR012677 Pfam:PF00076 Pfam:PF03159 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0289921 Pfam:PF06201 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 EMBL:AAFI02000149
GO:GO:0004527 InterPro:IPR008979 SUPFAM:SSF49785
Gene3D:2.60.120.470 InterPro:IPR010400 PROSITE:PS51532
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 KO:K12619
RefSeq:XP_635977.1 ProteinModelPortal:Q54GU2
EnsemblProtists:DDB0188640 GeneID:8627392 KEGG:ddi:DDB_G0289921
InParanoid:Q54GU2 OMA:MDADLIF Uniprot:Q54GU2
Length = 1235
Score = 288 (106.4 bits), Expect = 2.8e-44, Sum P(2) = 2.8e-44
Identities = 95/321 (29%), Positives = 138/321 (42%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH 60
MG+P+FYRWL E +P V+ + + E I + +D + N ++ D+ +
Sbjct: 1 MGIPSFYRWLIENFPKVLENNLNGE---IKFNNLYIDMNGVVHNAIKLDHSPTSSSSSSS 57
Query: 61 PCFHPEDRPAPTTF---------------DEVF-QCMFDYIDRLFVMVRPRKLLYMAIDG 104
P P TT+ DE + +F +D++ V P LLY+ +DG
Sbjct: 58 TTTTPPTTPT-TTYSKDKEVVLMLKSELSDEKLKERIFYRLDQMVNNVNPSSLLYIGVDG 116
Query: 105 VAPRAKMNQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPKSDSQVFDSNVITPGT 164
V PRAK +Q + + S +FDSN I+P T
Sbjct: 117 VPPRAKAIEQRKRRFKSSKETVDVIIKQLKSKSKPITRDSII--EQFSLIFDSNSISPAT 174
Query: 165 EFMAVLSIALQYYI-HLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDP 223
EF+ + ++ Y L L + + +ILSD+ VPGEGEHKIM Y+R + D
Sbjct: 175 EFIEKVDDWIKDYCKQLSLKR----QNLSIILSDSTVPGEGEHKIMDYIRQNHPILKKD- 229
Query: 224 NTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLC-GQPGHLAANCEGKAK 282
HC YG+DADLI L L +H +F ILR+ P C C H C
Sbjct: 230 GMSHCFYGMDADLIFLGLESHLSNFYILRD----PISLISCSTCKANDDHSNYECRSAIA 285
Query: 283 RKAGEFDEKGDEVVVPKKPYQ 303
K +F +K V+V P Q
Sbjct: 286 LKK-QFQKKSTSVIVRGIPNQ 305
Score = 274 (101.5 bits), Expect = 2.8e-44, Sum P(2) = 2.8e-44
Identities = 66/205 (32%), Positives = 103/205 (50%)
Query: 530 NSDNPEEDKVKLGEPGWKER---YYEEKFN--AKTPEEREETRKDVVLRYTEGLCWVMHY 584
NS + E + + P +K YY KF+ K ++ ++ D+ +YT GL WV+ Y
Sbjct: 748 NSTSNESSSIVMVPPEFKYDDLLYYRVKFDLIGKPDDQVKKLVDDMCYQYTLGLHWVLRY 807
Query: 585 YYEGVCSWQWFYPYHYAPFASDL----------KDLDQFN--ISFELGHPFKPFNQLLGV 632
Y G +W W+YPYHYAP A DL +D + N +F+L P P L V
Sbjct: 808 YVSGCQAWDWYYPYHYAPLAKDLLNYQKRLSKIQDREMVNNQFNFKLSSPLPPLIHLASV 867
Query: 633 FPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDE 692
P S LP+ + ++ + NSP + Y D++ D NG+ +W+ I L F+D + +
Sbjct: 868 LPRNSVAFLPDSMKHIVNE-NSPFTASYRDDYKYDFNGENVAWKAIVLLDFMDIEKFKEY 926
Query: 693 VKKI-EHTLTEEEARRNSIMADMLF 716
+ I + LT+ E +RN I D+ F
Sbjct: 927 LLPIVNNELTDNEKKRNLIGNDIKF 951
Score = 151 (58.2 bits), Expect = 7.4e-30, Sum P(2) = 7.4e-30
Identities = 45/167 (26%), Positives = 83/167 (49%)
Query: 207 KIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFL 266
+I+ ++Q+ L +DPNT D + L L++ V+ + ++F + L
Sbjct: 538 RIIKDSKIQQVLAKFDPNTPK-----DVAIFYLGLSSWNVNRAFENYLLFNKAGLEHTIL 592
Query: 267 CGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEF--RIPNPP 324
+ N G K +K K + +++I + R YL+Y F +I
Sbjct: 593 NNTTDNDNNNSNGSGSGK-----KK-------KILFDYVNIDSFRTYLEYYFFEKIEKSK 640
Query: 325 FE-IDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKK 370
E I+ +++DF +CF++GNDFLPH+P++ I+ G+I L+M Y++
Sbjct: 641 REKINFNRVINDFTVLCFYLGNDFLPHLPSVGIQSGSIELIMCWYRE 687
>UNIPROTKB|C9JCZ8 [details] [associations]
symbol:XRN1 "5'-3' exoribonuclease 1" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] InterPro:IPR004859
Pfam:PF03159 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 ChiTaRS:XRN1
HGNC:HGNC:30654 InterPro:IPR027073 PANTHER:PTHR12341 EMBL:AC023508
EMBL:AC109992 IPI:IPI00979282 ProteinModelPortal:C9JCZ8 SMR:C9JCZ8
STRING:C9JCZ8 Ensembl:ENST00000477237 ArrayExpress:C9JCZ8
Bgee:C9JCZ8 Uniprot:C9JCZ8
Length = 165
Score = 274 (101.5 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
Identities = 48/95 (50%), Positives = 68/95 (71%)
Query: 167 MAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTR 226
MA L L+Y+++++++ D W+ + + S PGEGEHKIM ++R ++ P +DPNTR
Sbjct: 1 MARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTR 60
Query: 227 HCLYGLDADLIMLALATHEVHFSILREVVFTPGQQ 261
HCLYGLDADLIML L +HE HFS+LRE V G++
Sbjct: 61 HCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKK 95
Score = 158 (60.7 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
Identities = 31/70 (44%), Positives = 45/70 (64%)
Query: 290 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFMCFFVGND 346
+K V P++ + LH+ +REY+DYEF + F+ D+E I+DD+I M F VGND
Sbjct: 94 KKTQRVCAPEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGND 153
Query: 347 FLPHMPTLEI 356
F+PH+P L I
Sbjct: 154 FIPHLPHLHI 163
>UNIPROTKB|F8WDA0 [details] [associations]
symbol:XRN1 "5'-3' exoribonuclease 1" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR004859 Pfam:PF03159
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 ChiTaRS:XRN1
HGNC:HGNC:30654 InterPro:IPR027073 PANTHER:PTHR12341 EMBL:AC023508
EMBL:AC109992 IPI:IPI00792899 ProteinModelPortal:F8WDA0 SMR:F8WDA0
Ensembl:ENST00000486211 ArrayExpress:F8WDA0 Bgee:F8WDA0
Uniprot:F8WDA0
Length = 107
Score = 216 (81.1 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 40/70 (57%), Positives = 52/70 (74%)
Query: 47 EYDNLYLDMNGIIHPCFHPEDRPAPTTF--DEVFQCMFDYIDRLFVMVRPRKLLYMAIDG 104
E+DNLYLDMNGIIH C HP D D++F +F Y++ LF +++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 105 VAPRAKMNQQ 114
VAPRAKMNQQ
Sbjct: 88 VAPRAKMNQQ 97
Score = 83 (34.3 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 1 MGVPAFYRWLAEKYPLVVADVIEEEPV 27
MGVP FYRW++E+YP + ++V++E +
Sbjct: 1 MGVPKFYRWISERYPCL-SEVVKEHQI 26
>DICTYBASE|DDB_G0272997 [details] [associations]
symbol:DDB_G0272997 species:44689 "Dictyostelium
discoideum" [GO:0005622 "intracellular" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR004859 Pfam:PF03159
dictyBase:DDB_G0272997 GO:GO:0003676 GO:GO:0005622
EMBL:AAFI02000008 GO:GO:0004527 eggNOG:COG5049 RefSeq:XP_644931.1
EnsemblProtists:DDB0217078 GeneID:8618610 KEGG:ddi:DDB_G0272997
InParanoid:Q558Y5 OMA:NSKFNNS Uniprot:Q558Y5
Length = 1114
Score = 149 (57.5 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 77/327 (23%), Positives = 135/327 (41%)
Query: 49 DNLYLDMNGIIHPCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPR 108
D++Y+D+N +H D T VF+ + +ID + VR + ++ IDG PR
Sbjct: 26 DHVYIDLNNYLHKSVKRGDNSKLNTEVNVFRILKSFIDGILRKVRVKHSVFFGIDGPGPR 85
Query: 109 AKMN-QQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPPK---------SDSQVFDSN 158
+KM Q+ + P+ +D + FDS+
Sbjct: 86 SKMILQRERRLKNGNIDKLKYFINRNKEQQQQQQQQQQQSPQLHDYDYLNENDLKSFDSS 145
Query: 159 V----ITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 214
TPGT FM L L +Y +L + K K+ +S ++ GEGE KI + L
Sbjct: 146 FSTLEFTPGTTFMGKLKDFLIFYTKNKLY----FAK-KIFISASDRIGEGEFKIFEQI-L 199
Query: 215 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILR----EVVFTPGQQDKCFLCGQP 270
N P D T + D+D+++ +L + + I E++ +DK + Q
Sbjct: 200 NSNYPINDSFT---IVSSDSDILLFSLLSKYKNVYIYNKDSEEIIKIDKIRDKIY---QQ 253
Query: 271 GHLAANCEGKAKRKAG-EFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDL 329
+ + K ++K+G E + +G+ + +K + + I E + E
Sbjct: 254 CYKKKQKKQKQQKKSGGEVEGEGEGIATEEKE-EGVQIEEEEEEEEEE----EEDISKRR 308
Query: 330 ECIVDDFIFMCFFVGNDFLPHMPTLEI 356
+ IVD F+ + F +G D LP + + I
Sbjct: 309 QAIVD-FVMLTFLMGTDHLPKVSSYNI 334
Score = 61 (26.5 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 17/76 (22%), Positives = 38/76 (50%)
Query: 524 DKSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLR-YTEGLCWVM 582
+ + ++N E++++ E G + +E T ++KD++L Y GL W +
Sbjct: 592 ENENEIENENEIENEIE-NEDGDVKMNEKETITTTTTTAAAYSKKDILLNHYLYGLIWHI 650
Query: 583 HYYYEGVCS-WQWFYP 597
+Y+ G C+ + + +P
Sbjct: 651 NYF-GGKCNDFNFSFP 665
Score = 43 (20.2 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 13/60 (21%), Positives = 27/60 (45%)
Query: 384 KPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQARRGDDVEPLAQPDSLVP 443
KP L +Q + E + + L Q+H ++ ++++ Q + +P QP +P
Sbjct: 935 KPELEMKAQQVQYQTTQE--LEDQDQALIQQHLKQYQQQQQQQKSTQTEQPREQPQPKLP 992
Score = 39 (18.8 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 808 PPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPHEN 842
PP ++F ++ + P ++H PH N
Sbjct: 722 PPVPLLFGILLIDYSNKHLFPTIYHPIYKETPHFN 756
Score = 37 (18.1 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 11/63 (17%), Positives = 33/63 (52%)
Query: 643 EHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTE 702
+HY+ + ++ ++F P E++M ++ +Q +L D+A + +K+ + +
Sbjct: 922 KHYQ----NKSNRFNNFKP---ELEMKAQQVQYQTTQELEDQDQALIQQHLKQYQQQQQQ 974
Query: 703 EEA 705
+++
Sbjct: 975 QKS 977
Score = 37 (18.1 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 531 SDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREE 565
+DN +D + + G E +E N E+ EE
Sbjct: 554 NDNDADDNSEEEDDGCNENDEDEDDNQDEDEDFEE 588
>UNIPROTKB|Q4KGS2 [details] [associations]
symbol:PFL_1433 "Putative lipoprotein" species:220664
"Pseudomonas protegens Pf-5" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:CP000076 GenomeReviews:CP000076_GR RefSeq:YP_258561.1
GeneID:3475781 KEGG:pfl:PFL_1433 PATRIC:19872079
HOGENOM:HOG000132442 OMA:TYVERTE ProtClustDB:CLSK838620
BioCyc:PFLU220664:GIX8-1440-MONOMER Uniprot:Q4KGS2
Length = 131
Score = 100 (40.3 bits), Expect = 0.00048, P = 0.00048
Identities = 32/103 (31%), Positives = 43/103 (41%)
Query: 929 SSISAAQPPYDGGYSQHYASNTSHHPNRRYH----PQYDRNSSGEHPTHLYNPSGIHQNG 984
SS++A P Y GG S +Y+S P Y+ Y +P Y P+ +
Sbjct: 13 SSLAACAPYYGGG-SGYYSSEVYSAPAPAYYYGGGSSYYSTGRSYYPPRYYQPAPRYYQS 71
Query: 985 GPRY--PPRPMGSTSSGANLYPPQGGYSGYQSPAAGSFNQWGG 1025
PRY PPR + YP QG + G+ P S WGG
Sbjct: 72 APRYYQPPRAVYRP------YPNQG-WGGHGRPNNWSNQDWGG 107
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.429 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1123 990 0.00099 122 3 11 22 0.41 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 45
No. of states in DFA: 622 (66 KB)
Total size of DFA: 527 KB (2240 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 92.25u 0.11s 92.36t Elapsed: 00:00:54
Total cpu time: 92.28u 0.11s 92.39t Elapsed: 00:00:56
Start: Fri May 10 21:01:13 2013 End: Fri May 10 21:02:09 2013